@ozgunbabur , I see lots of warnings in PC logs (cpath2, PC9, which uses Paxtools) like:
WARN o.b.p.q.w.GraphL3Undirected - Invalid BioPAX object to wrap as node. Ignoring: http://identifiers.org/wikipathways/WP143/dd235
Why is this a warning, is this a problem, bug?.. If not, why to log as warning instead of debug?..