Skip to content
This repository was archived by the owner on Mar 25, 2025. It is now read-only.
This repository was archived by the owner on Mar 25, 2025. It is now read-only.

MOD files containing two SOLVEs don't compile. #1501

@1uc

Description

@1uc

For example the following:

$ cat two_blocks.mod
NEURON {
    SUFFIX two_blocks
    RANGE A, B, X, Y
    NONSPECIFIC_CURRENT il
}

STATE {
    X
    Y
    A
    B
}

ASSIGNED {
    il
    i
}

BREAKPOINT {
    SOLVE state1 METHOD sparse
    SOLVE state2 METHOD sparse
    il = i
}

INITIAL {
    A = 1.0
    B = 3.0
    X = 0.0
    Y = 1.0
}

KINETIC state1 {
    ~ X <-> Y (0.4, 0.5)
}

KINETIC state2 {
    ~ A <-> B (0.6, 0.7)
    i = (f_flux-b_flux)
}

generates the following C++ code:

            Eigen::Matrix<double, 2, 1> nmodl_eigen_xm;
            double* nmodl_eigen_x = nmodl_eigen_xm.data();
            nmodl_eigen_x[static_cast<int>(0)] = inst->X[id];
            nmodl_eigen_x[static_cast<int>(1)] = inst->Y[id];
            // call newton solver
            functor_two_blocks_0 newton_functor(nt, inst, id, pnodecount, v, indexes, data, thread);
            newton_functor.initialize();
            int newton_iterations = nmodl::newton::newton_solver(nmodl_eigen_xm, newton_functor);
            if (newton_iterations < 0) assert(false && "Newton solver did not converge!");
            inst->X[id] = nmodl_eigen_x[static_cast<int>(0)];
            inst->Y[id] = nmodl_eigen_x[static_cast<int>(1)];
            newton_functor.initialize(); // TODO mimic calling F again.
            newton_functor.finalize();

            
            Eigen::Matrix<double, 2, 1> nmodl_eigen_xm;
            double* nmodl_eigen_x = nmodl_eigen_xm.data();
            nmodl_eigen_x[static_cast<int>(0)] = inst->A[id];
            nmodl_eigen_x[static_cast<int>(1)] = inst->B[id];
            // call newton solver
            functor_two_blocks_1 newton_functor(nt, inst, id, pnodecount, v, indexes, data, thread);
            newton_functor.initialize();
            int newton_iterations = nmodl::newton::newton_solver(nmodl_eigen_xm, newton_functor);
            if (newton_iterations < 0) assert(false && "Newton solver did not converge!");
            inst->A[id] = nmodl_eigen_x[static_cast<int>(0)];
            inst->B[id] = nmodl_eigen_x[static_cast<int>(1)];
            newton_functor.initialize(); // TODO mimic calling F again.
            newton_functor.finalize();

and fails with:

$ nrnivmodl -coreneuron
x86_64/corenrn/mod2c/two_blocks.cpp:786:41: error: redeclaration of ‘Eigen::Matrix<double, 2, 1> nmodl_eigen_xm’
  786 |             Eigen::Matrix<double, 2, 1> nmodl_eigen_xm;
      |                                         ^~~~~~~~~~~~~~
x86_64/corenrn/mod2c/two_blocks.cpp:771:41: note: ‘Eigen::Matrix<double, 2, 1> nmodl_eigen_xm’ previously declared here
  771 |             Eigen::Matrix<double, 2, 1> nmodl_eigen_xm;
      |                                         ^~~~~~~~~~~~~~

NOCMODL seems to generate code that compiles and looks sane. Therefore, it's not obvious the MOD file is invalid.

Metadata

Metadata

Assignees

No one assigned

    Labels

    No labels
    No labels

    Type

    No type

    Projects

    No projects

    Milestone

    No milestone

    Relationships

    None yet

    Development

    No branches or pull requests

    Issue actions