Provide galaxy integration

[vkuznet]

I put first draft of galaxy integration script over here: https://github.com/CHESSComputing/CHAPaaS/blob/main/scripts/galaxy.sh

It can be run as simple as following:

scripts/galaxy.sh /Users/vk/Work/Languages/Go/gopath/src/github.com/vkuznet/CHAPaaS/chap/users/vkuznet /Users/vk/tmp/ChessAnalysisPipeline/install

and it will produce the following galaxy XML file:

cat /tmp/chapbook-galaxy.xml
<tool id="CHAPBook_vkuznet" name="CHESS Analysis Pipeline" version="0.0.8" python_template_version="pythonVersion" profile="21.05">
    <requirements>
        <requirement type="package" version="0.0.8">ChessAnalysisPipeline</requirement>
    </requirements>
    <command detect_errors="exit_code"><![CDATA[
        CHAP --config ''
    ]]></command>
    <inputs>
        <param type="data" name="config" format="yaml" />
    </inputs>
    <outputs>
    </outputs>
    <tests>
        <test>
            <param name="config" value="config.yaml"/>
        </test>
    </tests>
    <help><![CDATA[
        CHESS Analysis Pipeline (CHAP):

        To run it on command line you'll use:
        CHAP --config CONFIG

        To run it within galaxy you'll only need to upload your
        required configuration pipeline and necessary data.
    ]]></help>
    <citations>
        <citation type="bibtex">
@misc{githubChessAnalysisPipeline,
  author = {github, vkuznet},
  year = {2023},
  title = {CHAPBook analysis},
  publisher = {GitHub},
  journal = {GitHub repository},
  url = {https://github.com/CHAPUsers/CHAPBook},
}</citation>
    </citations>
</tool>

As you can see it include proper version from CHAP, and provide pre-configured xml file. We need to extend its functionality and provide proper integration with galaxy.

For that we can use planemo tool if necessary, we'll need to pack user config file somehow, and submit xml to whatever galaxy-dev destination we can choose.

FYI: @keara-soloway , @rolfverberg , @wernersun