Is this tool compatible with T2T-CHM13 reference?

[ywzhang071394]

Hi,

Thank you for the nice tool. I saw that the pre-built files are all designed for hg38 and hg19 reference. Is this tool compatible with t2T reference? If so, how can I set up the parameters?

[kefazhang]

Hi,

Thank you for the nice tool. I saw that the pre-built files are all designed for hg38 and hg19 reference. Is this tool compatible with t2T reference? If so, how can I set up the parameters?

Hi,
II have similar needs as you, and I would like to know if you have solved this problem. Thanks!

[ywzhang071394]

Nope, i have used another strategy instead.

[DayTimeMouse]

Hi ywzhang071394,

Could you please tell me some strategy to validate SV? I'd like to validate called SV.

Thanks in advance.