terminate called after throwing an instance of 'std::logic_error' what(): basic_string::_M_construct null not valid #4
Description
Hi there,
I am running vamos as seen below (with file paths abbreviated)... I keep running into this "terminate" error. I cannot seem to find any documentation of this error online in regards to vamos. I have checked all file paths and formats and all seems good there.
module load vamos/1.2.2
vamos --read -b /mnt/scratch/*.bam -r /mnt/vntr_region_motifs.e.bed -s sample_name -o /mnt/scratch/*.vcf -t 8
option -input with `/mnt/scratch/*.bam'
option -region with `/mnt/vntr_region_motifs.e.bed '
option -sampleName with `sample_name'
option -output with `/mnt/scratch/*.vcf'
option -numThreads with `8'
locuswise_flag is set.
finish reading 467078 vntrs
finish writing the header
start thread: 0
start thread: 1
start thread: 2
start thread: 3
start thread: 4
start thread: 5
start thread: 6
start thread: 7
terminate called after throwing an instance of 'std::logic_error'
what(): basic_string::_M_construct null not valid
Any help is much appreciated!!