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<html>
<head>
<title>ChassiDex Database</title>
<meta name="viewport" content="width=device-width, initial-scale=1.0">
<meta charset="utf-8">
<link rel="icon" type="image/png" href="/assets/icons/chassidex.png" />
<link rel="stylesheet" type="text/css" href="/assets/styles/index.css">
</head>
<body>
<section id="cover">
<img src="/assets/icons/chassidex.png" style="width: 35mm; height: auto;">
<br>
<h1>
Welcome to ChassiDex
</h1>
<br>
<p>
ChassiDex is a database of host organisms used in synthetic biology.
Under each host organism, all the information a synthetic biologist would
need to work with that organism is listed. We also work on software tools to make
working with different hosts easier.
<br><br>
Scroll below to view our list of organisms
</p>
<br>
<p>
We have also made browser based tools, for generating codon tables from genome data
of any organism
<a style="color: #06c;" href="https://cute.chassidex.org">(cute.chassidex.org)</a>,
and to carry out codon optimization for organisms on ChassiDex
<a style="color: #06c;" href="https://copter.chassidex.org">(copter.chassidex.org)</a>.
However, please note that these are still in beta stage.
</p>
<br>
<p>
Also, check out our icon font for drawing synbio circuits with ease.
<a style="color: #06c;" href="https://comicsyns.chassidex.org">
comicsyns.chassidex.org</a>
</p>
</section>
<section id="hosts">
<h1>Host organisms</h1>
<a class="hostlink1" href="/hosts/acidithiobacillus_ferrooxidans.html">Acidithiobacillus ferrooxidans</a>
<a class="hostlink1" href="/hosts/acinetobacter_baylyi.html">Acinetobacter baylyi</a>
<a class="hostlink1" href="/hosts/agrobacterium_tumefaciens.html">Agrobacterium tumefaciens</a>
<a class="hostlink1" href="/hosts/arabidopsis_thaliana.html">Arabidopsis thaliana</a>
<a class="hostlink1" href="/hosts/azotobacter_vinelandii.html">Azotobacter vinelandii</a>
<a class="hostlink1" href="/hosts/bacillus_licheniformis.html">Bacillus licheniformis</a>
<a class="hostlink2" href="/hosts/bacillus_subtilis.html">Bacillus subtilis</a>
<a class="hostlink1" href="/hosts/caenorhabditis_elegans.html">Caenorhabditis elegans</a>
<a class="hostlink1" href="/hosts/danio_rerio.html">Danio rerio</a>
<a class="hostlink1" href="/hosts/drosophila_melanogaster.html">Drosophila melanogaster</a>
<a class="hostlink1" href="/hosts/escherichia_coli.html">Escherichia coli</a>
<a class="hostlink3" href="/hosts/fusarium_solani.html">Fusarium solani</a>
<a class="hostlink2" href="/hosts/lactococcus_lactis.html">Lactococcus lactis</a>
<a class="hostlink1" href="/hosts/magnetospirillum_magneticum.html">Magnetospirillum magneticum</a>
<a class="hostlink1" href="/hosts/nicotiana_tabacum.html">Nicotiana tabacum</a>
<a class="hostlink3" href="/hosts/pichia_pastoris.html">Pichia pastoris</a>
<a class="hostlink1" href="/hosts/pseudomonas_fluorescens.html">Pseudomonas fluorescens</a>
<a class="hostlink1" href="/hosts/pseudomonas_putida.html">Pseudomonas putida</a>
<a class="hostlink3" href="/hosts/saccharomyces_cerevisiae.html">Saccharomyces cerevisiae</a>
<a class="hostlink2" href="/hosts/streptococcus_thermophilus.html">Streptococcus thermophilus</a>
<a class="hostlink1" href="/hosts/trichoderma_sp.html">Trichoderma Sp(Trichoderma reesei, Trichoderma virens)</a>
<a class="hostlink1" href="/hosts/vibrio_harveyi.html">Vibrio harveyi</a>
<a class="hostlink1" href="/hosts/vibrio_natriegens.html">Vibrio natriegens</a>
<h1>Browse by tags</h1>
<h2 id="None">#None</h2>
<a class="hostlink1" href="/hosts/agrobacterium_tumefaciens.html">Agrobacterium tumefaciens</a>
<a class="hostlink1" href="/hosts/arabidopsis_thaliana.html">Arabidopsis thaliana</a>
<a class="hostlink1" href="/hosts/bacillus_licheniformis.html">Bacillus licheniformis</a>
<a class="hostlink1" href="/hosts/caenorhabditis_elegans.html">Caenorhabditis elegans</a>
<a class="hostlink1" href="/hosts/danio_rerio.html">Danio rerio</a>
<a class="hostlink1" href="/hosts/drosophila_melanogaster.html">Drosophila melanogaster</a>
<a class="hostlink1" href="/hosts/nicotiana_tabacum.html">Nicotiana tabacum</a>
<a class="hostlink1" href="/hosts/trichoderma_sp.html">Trichoderma Sp(Trichoderma reesei, Trichoderma virens)</a>
<h2 id="acidophilic">#acidophilic</h2>
<a class="hostlink1" href="/hosts/acidithiobacillus_ferrooxidans.html">Acidithiobacillus ferrooxidans</a>
<h2 id="aerobic">#aerobic</h2>
<a class="hostlink1" href="/hosts/acinetobacter_baylyi.html">Acinetobacter baylyi</a>
<a class="hostlink1" href="/hosts/azotobacter_vinelandii.html">Azotobacter vinelandii</a>
<a class="hostlink3" href="/hosts/fusarium_solani.html">Fusarium solani</a>
<a class="hostlink1" href="/hosts/pseudomonas_fluorescens.html">Pseudomonas fluorescens</a>
<a class="hostlink1" href="/hosts/pseudomonas_putida.html">Pseudomonas putida</a>
<h2 id="chemolithoautotrophic">#chemolithoautotrophic</h2>
<a class="hostlink1" href="/hosts/acidithiobacillus_ferrooxidans.html">Acidithiobacillus ferrooxidans</a>
<h2 id="endosporulating">#endosporulating</h2>
<a class="hostlink2" href="/hosts/bacillus_subtilis.html">Bacillus subtilis</a>
<h2 id="eukaryotic">#eukaryotic</h2>
<a class="hostlink3" href="/hosts/fusarium_solani.html">Fusarium solani</a>
<a class="hostlink3" href="/hosts/pichia_pastoris.html">Pichia pastoris</a>
<a class="hostlink3" href="/hosts/saccharomyces_cerevisiae.html">Saccharomyces cerevisiae</a>
<h2 id="facultative-anaerobic">#facultative-anaerobic</h2>
<a class="hostlink1" href="/hosts/acidithiobacillus_ferrooxidans.html">Acidithiobacillus ferrooxidans</a>
<a class="hostlink2" href="/hosts/bacillus_subtilis.html">Bacillus subtilis</a>
<a class="hostlink1" href="/hosts/escherichia_coli.html">Escherichia coli</a>
<a class="hostlink3" href="/hosts/fusarium_solani.html">Fusarium solani</a>
<a class="hostlink2" href="/hosts/lactococcus_lactis.html">Lactococcus lactis</a>
<a class="hostlink1" href="/hosts/magnetospirillum_magneticum.html">Magnetospirillum magneticum</a>
<a class="hostlink3" href="/hosts/pichia_pastoris.html">Pichia pastoris</a>
<a class="hostlink3" href="/hosts/saccharomyces_cerevisiae.html">Saccharomyces cerevisiae</a>
<a class="hostlink2" href="/hosts/streptococcus_thermophilus.html">Streptococcus thermophilus</a>
<a class="hostlink1" href="/hosts/vibrio_harveyi.html">Vibrio harveyi</a>
<a class="hostlink1" href="/hosts/vibrio_natriegens.html">Vibrio natriegens</a>
<h2 id="filamentous fungus">#filamentous fungus</h2>
<a class="hostlink3" href="/hosts/fusarium_solani.html">Fusarium solani</a>
<h2 id="fungal">#fungal</h2>
<a class="hostlink3" href="/hosts/fusarium_solani.html">Fusarium solani</a>
<a class="hostlink3" href="/hosts/pichia_pastoris.html">Pichia pastoris</a>
<a class="hostlink3" href="/hosts/saccharomyces_cerevisiae.html">Saccharomyces cerevisiae</a>
<h2 id="gram-negative">#gram-negative</h2>
<a class="hostlink1" href="/hosts/acidithiobacillus_ferrooxidans.html">Acidithiobacillus ferrooxidans</a>
<a class="hostlink1" href="/hosts/acinetobacter_baylyi.html">Acinetobacter baylyi</a>
<a class="hostlink1" href="/hosts/azotobacter_vinelandii.html">Azotobacter vinelandii</a>
<a class="hostlink1" href="/hosts/escherichia_coli.html">Escherichia coli</a>
<a class="hostlink1" href="/hosts/magnetospirillum_magneticum.html">Magnetospirillum magneticum</a>
<a class="hostlink1" href="/hosts/pseudomonas_fluorescens.html">Pseudomonas fluorescens</a>
<a class="hostlink1" href="/hosts/pseudomonas_putida.html">Pseudomonas putida</a>
<a class="hostlink1" href="/hosts/vibrio_harveyi.html">Vibrio harveyi</a>
<a class="hostlink1" href="/hosts/vibrio_natriegens.html">Vibrio natriegens</a>
<h2 id="gram-positive">#gram-positive</h2>
<a class="hostlink2" href="/hosts/bacillus_subtilis.html">Bacillus subtilis</a>
<a class="hostlink2" href="/hosts/lactococcus_lactis.html">Lactococcus lactis</a>
<a class="hostlink2" href="/hosts/streptococcus_thermophilus.html">Streptococcus thermophilus</a>
<h2 id="halophilic">#halophilic</h2>
<a class="hostlink1" href="/hosts/vibrio_harveyi.html">Vibrio harveyi</a>
<a class="hostlink1" href="/hosts/vibrio_natriegens.html">Vibrio natriegens</a>
<h2 id="lactose-fermenting">#lactose-fermenting</h2>
<a class="hostlink2" href="/hosts/lactococcus_lactis.html">Lactococcus lactis</a>
<a class="hostlink2" href="/hosts/streptococcus_thermophilus.html">Streptococcus thermophilus</a>
<h2 id="magnetotactic">#magnetotactic</h2>
<a class="hostlink1" href="/hosts/magnetospirillum_magneticum.html">Magnetospirillum magneticum</a>
<h2 id="metal-solubilizing">#metal-solubilizing</h2>
<a class="hostlink1" href="/hosts/acidithiobacillus_ferrooxidans.html">Acidithiobacillus ferrooxidans</a>
<h2 id="naturally-competent">#naturally-competent</h2>
<a class="hostlink1" href="/hosts/acinetobacter_baylyi.html">Acinetobacter baylyi</a>
<h2 id="nitrogen-fixing">#nitrogen-fixing</h2>
<a class="hostlink1" href="/hosts/azotobacter_vinelandii.html">Azotobacter vinelandii</a>
<h2 id="probiotic">#probiotic</h2>
<a class="hostlink2" href="/hosts/streptococcus_thermophilus.html">Streptococcus thermophilus</a>
<h2 id="prokaryotic">#prokaryotic</h2>
<a class="hostlink1" href="/hosts/acidithiobacillus_ferrooxidans.html">Acidithiobacillus ferrooxidans</a>
<a class="hostlink1" href="/hosts/acinetobacter_baylyi.html">Acinetobacter baylyi</a>
<a class="hostlink1" href="/hosts/azotobacter_vinelandii.html">Azotobacter vinelandii</a>
<a class="hostlink2" href="/hosts/bacillus_subtilis.html">Bacillus subtilis</a>
<a class="hostlink1" href="/hosts/escherichia_coli.html">Escherichia coli</a>
<a class="hostlink2" href="/hosts/lactococcus_lactis.html">Lactococcus lactis</a>
<a class="hostlink1" href="/hosts/magnetospirillum_magneticum.html">Magnetospirillum magneticum</a>
<a class="hostlink1" href="/hosts/pseudomonas_fluorescens.html">Pseudomonas fluorescens</a>
<a class="hostlink1" href="/hosts/pseudomonas_putida.html">Pseudomonas putida</a>
<a class="hostlink2" href="/hosts/streptococcus_thermophilus.html">Streptococcus thermophilus</a>
<a class="hostlink1" href="/hosts/vibrio_harveyi.html">Vibrio harveyi</a>
<a class="hostlink1" href="/hosts/vibrio_natriegens.html">Vibrio natriegens</a>
<h2 id="yeast">#yeast</h2>
<a class="hostlink3" href="/hosts/pichia_pastoris.html">Pichia pastoris</a>
<a class="hostlink3" href="/hosts/saccharomyces_cerevisiae.html">Saccharomyces cerevisiae</a>
<h1>We need data contributors</h1>
<div></div>
<p>
If you are working on a host organism that is not indexed here, you can help by
contributing data. Please fill this
<a href="http://goo.gl/forms/b5tDcKSiTRYXFMxt2">form</a>
and we will get back to you.
</p>
<div></div>
</section>
</body>
</html>