From 1de3659ef4dc91a6db56a5a8f3d9781c44fa14f0 Mon Sep 17 00:00:00 2001 From: DanielAvdar <66269169+DanielAvdar@users.noreply.github.com> Date: Wed, 9 Apr 2025 13:56:44 +0300 Subject: [PATCH 1/4] Add Sphinx documentation and related configuration Introduce Sphinx for documentation generation, including configuration files, themes, and build scripts. Integrated doc generation into the project workflow and configured Read the Docs for automated deployment. Updated dependencies to include required Sphinx packages. Signed-off-by: DanielAvdar <66269169+DanielAvdar@users.noreply.github.com> --- .github/dependabot.yml | 4 + .github/workflows/docs.yml | 33 ++ .pre-commit-config.yaml | 7 +- .readthedocs.yaml | 22 ++ Makefile | 5 +- docs/Makefile | 20 + docs/make.bat | 35 ++ docs/source/conf.py | 45 +++ docs/source/index.rst | 16 + my_pkg/__init__.py | 3 + pyproject.toml | 9 +- tests/test_init.py | 2 + uv.lock | 782 ++++++++++++++++++++++++++++++------- 13 files changed, 829 insertions(+), 154 deletions(-) create mode 100644 .github/workflows/docs.yml create mode 100644 .readthedocs.yaml create mode 100644 docs/Makefile create mode 100644 docs/make.bat create mode 100644 docs/source/conf.py create mode 100644 docs/source/index.rst diff --git a/.github/dependabot.yml b/.github/dependabot.yml index 91648e8..19053ed 100644 --- a/.github/dependabot.yml +++ b/.github/dependabot.yml @@ -9,6 +9,10 @@ updates: directory: "/" # Location of package manifests schedule: interval: daily + - package-ecosystem: "uv" # See documentation for possible values + directory: "/" # Location of package manifests + schedule: + interval: daily - package-ecosystem: "github-actions" directory: "/" schedule: diff --git a/.github/workflows/docs.yml b/.github/workflows/docs.yml new file mode 100644 index 0000000..bd12e5e --- /dev/null +++ b/.github/workflows/docs.yml @@ -0,0 +1,33 @@ +name: Publish docs GH Pages +on: + pull_request: # todo: remove this after testing + release: + types: [ published ] + workflow_dispatch: + +permissions: + contents: write + pages: write + id-token: write + +jobs: + + create-docs: + runs-on: ubuntu-latest + + steps: + - uses: actions/checkout@v4 + - uses: astral-sh/setup-uv@v5 + with: + enable-cache: true + - run: uv python install 3.11 + + - run: make + - run: make doc + + - name: Deploy + uses: peaceiris/actions-gh-pages@v4 + with: + github_token: ${{ secrets.GITHUB_TOKEN }} + publish_dir: ./docs/build + keep_files: true diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index dd7b7df..7577f7d 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -7,14 +7,9 @@ repos: - id: trailing-whitespace - id: no-commit-to-branch - repo: https://github.com/astral-sh/ruff-pre-commit - rev: v0.8.4 + rev: v0.11.4 hooks: - id: ruff-format args: [ --preview, --config=pyproject.toml ] - id: ruff args: [ --preview, --fix,--unsafe-fixes, --config=pyproject.toml ] - - - repo: https://github.com/astral-sh/uv-pre-commit - rev: 0.5.13 - hooks: - - id: uv-lock diff --git a/.readthedocs.yaml b/.readthedocs.yaml new file mode 100644 index 0000000..9f084c5 --- /dev/null +++ b/.readthedocs.yaml @@ -0,0 +1,22 @@ +# Read the Docs configuration file +# See https://docs.readthedocs.io/en/stable/config-file/v2.html for details + +# Required +version: 2 + +# Build documentation in the "docs/" directory with Sphinx + +sphinx: + configuration: docs/source/conf.py +# Optionally build your docs in additional formats such as PDF and ePub +formats: all + +# Set the OS, Python version, and other tools you might need +build: + os: ubuntu-24.04 + tools: + python: "3.12" + jobs: + post_install: + - pip install uv + - UV_PROJECT_ENVIRONMENT=$READTHEDOCS_VIRTUALENV_PATH uv sync --all-extras --group docs --link-mode=copy diff --git a/Makefile b/Makefile index a068277..b62c4f3 100644 --- a/Makefile +++ b/Makefile @@ -22,4 +22,7 @@ coverage: uv run pytest --cov=ml_orchestrator --cov-report=xml mypy: - uv tool run mypy . --config-file pyproject.toml + uv tool run mypy my_pkg --config-file pyproject.toml # todo: chanege my_pkg to the actual package name + +doc: + uv run sphinx-build -M html docs/source docs/build/ diff --git a/docs/Makefile b/docs/Makefile new file mode 100644 index 0000000..d0c3cbf --- /dev/null +++ b/docs/Makefile @@ -0,0 +1,20 @@ +# Minimal makefile for Sphinx documentation +# + +# You can set these variables from the command line, and also +# from the environment for the first two. +SPHINXOPTS ?= +SPHINXBUILD ?= sphinx-build +SOURCEDIR = source +BUILDDIR = build + +# Put it first so that "make" without argument is like "make help". +help: + @$(SPHINXBUILD) -M help "$(SOURCEDIR)" "$(BUILDDIR)" $(SPHINXOPTS) $(O) + +.PHONY: help Makefile + +# Catch-all target: route all unknown targets to Sphinx using the new +# "make mode" option. $(O) is meant as a shortcut for $(SPHINXOPTS). +%: Makefile + @$(SPHINXBUILD) -M $@ "$(SOURCEDIR)" "$(BUILDDIR)" $(SPHINXOPTS) $(O) diff --git a/docs/make.bat b/docs/make.bat new file mode 100644 index 0000000..dc1312a --- /dev/null +++ b/docs/make.bat @@ -0,0 +1,35 @@ +@ECHO OFF + +pushd %~dp0 + +REM Command file for Sphinx documentation + +if "%SPHINXBUILD%" == "" ( + set SPHINXBUILD=sphinx-build +) +set SOURCEDIR=source +set BUILDDIR=build + +%SPHINXBUILD% >NUL 2>NUL +if errorlevel 9009 ( + echo. + echo.The 'sphinx-build' command was not found. Make sure you have Sphinx + echo.installed, then set the SPHINXBUILD environment variable to point + echo.to the full path of the 'sphinx-build' executable. Alternatively you + echo.may add the Sphinx directory to PATH. + echo. + echo.If you don't have Sphinx installed, grab it from + echo.https://www.sphinx-doc.org/ + exit /b 1 +) + +if "%1" == "" goto help + +%SPHINXBUILD% -M %1 %SOURCEDIR% %BUILDDIR% %SPHINXOPTS% %O% +goto end + +:help +%SPHINXBUILD% -M help %SOURCEDIR% %BUILDDIR% %SPHINXOPTS% %O% + +:end +popd diff --git a/docs/source/conf.py b/docs/source/conf.py new file mode 100644 index 0000000..f0b3e1d --- /dev/null +++ b/docs/source/conf.py @@ -0,0 +1,45 @@ +# Configuration file for the Sphinx documentation builder. +# +# For the full list of built-in configuration values, see the documentation: +# https://www.sphinx-doc.org/en/master/usage/configuration.html + +# -- Project information ----------------------------------------------------- +# https://www.sphinx-doc.org/en/master/usage/configuration.html#project-information +import os +import sys +from importlib.metadata import version + +sys.path.insert(0, os.path.abspath("../../")) +# sys.path.insert(0, os.path.abspath("./")) # in conf.py + + +project = "python-template" # todo: change this to your project name +version = version("my-pkg") # todo: change my-pkg to your package name +release = version + +copyright = "2025, DanielAvdar" # noqa todo: change this to your name +author = "DanielAvdar" # todo: change this to your name + +# -- General configuration --------------------------------------------------- +# https://www.sphinx-doc.org/en/master/usage/configuration.html#general-configuration + +extensions = [ + "sphinx.ext.autodoc", # Core extension for pulling docstrings + "sphinx.ext.napoleon", # Support for Google and NumPy style docstrings + "sphinx.ext.viewcode", # Add links to source code + "sphinx.ext.githubpages", # If deploying to GitHub Pages + "sphinx.ext.autodoc", + "sphinx.ext.doctest", + "sphinx.ext.intersphinx", +] + +templates_path = ["_templates"] +exclude_patterns = [] + + +# -- Options for HTML output ------------------------------------------------- +# https://www.sphinx-doc.org/en/master/usage/configuration.html#options-for-html-output + +html_theme = "sphinx_rtd_theme" +master_doc = "index" +html_static_path = ["_static"] diff --git a/docs/source/index.rst b/docs/source/index.rst new file mode 100644 index 0000000..35adf3c --- /dev/null +++ b/docs/source/index.rst @@ -0,0 +1,16 @@ +.. python-template documentation master file, created by + sphinx-quickstart on Wed Apr 9 13:29:29 2025. + You can adapt this file completely to your liking, but it should at least + contain the root `toctree` directive. + +python-template documentation +============================= + +Add your content using ``reStructuredText`` syntax. See the +`reStructuredText `_ +documentation for details. + + +.. toctree:: + :maxdepth: 2 + :caption: Contents: diff --git a/my_pkg/__init__.py b/my_pkg/__init__.py index e69de29..baaed07 100644 --- a/my_pkg/__init__.py +++ b/my_pkg/__init__.py @@ -0,0 +1,3 @@ +from importlib.metadata import version + +__version__ = version("my-pkg") diff --git a/pyproject.toml b/pyproject.toml index 930f0b4..7cb01ad 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -24,6 +24,10 @@ dev = [ "mypy==1.13.0", "pytest-parametrization>=2022", "ruff>=0.8.2", + "sybil[pytest]", + "sphinx>=8.2.0; python_version >= '3.11'", + "sphinx>=7.0.0; python_version < '3.11'", + "sphinx-rtd-theme>=3.0.2", ] [tool.hatch.build.targets.sdist] @@ -63,8 +67,3 @@ check_untyped_defs = true warn_redundant_casts = true warn_unused_ignores = true strict_optional = false - - -[[tool.mypy.overrides]] -module = "tests.*" -ignore_errors = true diff --git a/tests/test_init.py b/tests/test_init.py index 5784fd6..3c032a2 100644 --- 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Codecov workflow to track code coverage. It triggers on pull requests, main branch pushes, and manual dispatch. The configuration includes setup for Poetry, pytest coverage, and the Codecov action with error handling. Signed-off-by: DanielAvdar <66269169+DanielAvdar@users.noreply.github.com> --- .github/workflows/codecov.yml | 31 +++++++++++++++++++++++++++++++ 1 file changed, 31 insertions(+) create mode 100644 .github/workflows/codecov.yml diff --git a/.github/workflows/codecov.yml b/.github/workflows/codecov.yml new file mode 100644 index 0000000..dd21942 --- /dev/null +++ b/.github/workflows/codecov.yml @@ -0,0 +1,31 @@ +name: Codecov +on: + pull_request: + paths: + - 'my_pkg/**' # todo: change my_pkg to the name of the package + - 'tests/**' + - '.github/workflows/codecov.yml' + push: + branches: + - main + workflow_dispatch: +jobs: + upload-coverage-report: + runs-on: ubuntu-latest + steps: + - uses: actions/checkout@v4 + - run: pipx install poetry + - uses: actions/setup-python@v5 + with: + python-version: '3.11' + cache: poetry + + - run: poetry install + - run: poetry run pytest --cov=pandas_pyarrow --cov-report=xml + - uses: codecov/codecov-action@v4 + with: + fail_ci_if_error: true + verbose: true + env: + CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }} + continue-on-error: true From f9055979e559027fe351356688ed716587b5583e Mon Sep 17 00:00:00 2001 From: DanielAvdar <66269169+DanielAvdar@users.noreply.github.com> Date: Wed, 9 Apr 2025 15:38:54 +0300 Subject: [PATCH 3/4] Refactor Codecov workflow to use UV and Make integration. Replaced Poetry setup with UV toolchain and Make for dependency management and test execution. Improved caching configuration and added Codecov test results action for better coverage reporting. Signed-off-by: DanielAvdar <66269169+DanielAvdar@users.noreply.github.com> --- .github/workflows/codecov.yml | 16 ++++++++-------- 1 file changed, 8 insertions(+), 8 deletions(-) diff --git a/.github/workflows/codecov.yml b/.github/workflows/codecov.yml index dd21942..451269c 100644 --- a/.github/workflows/codecov.yml +++ b/.github/workflows/codecov.yml @@ -14,18 +14,18 @@ jobs: runs-on: ubuntu-latest steps: - uses: actions/checkout@v4 - - run: pipx install poetry - - uses: actions/setup-python@v5 + - uses: astral-sh/setup-uv@v4 with: - python-version: '3.11' - cache: poetry - - - run: poetry install - - run: poetry run pytest --cov=pandas_pyarrow --cov-report=xml + enable-cache: true + - run: uv python install 3.11 + - run: make + - run: make coverage - uses: codecov/codecov-action@v4 with: fail_ci_if_error: true verbose: true env: CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }} - continue-on-error: true + - uses: codecov/test-results-action@v1 + with: + token: ${{ secrets.CODECOV_TOKEN }} From 17aa15133dab248ac631995380395226207c16dc Mon Sep 17 00:00:00 2001 From: DanielAvdar <66269169+DanielAvdar@users.noreply.github.com> Date: Wed, 9 Apr 2025 15:40:48 +0300 Subject: [PATCH 4/4] Update package name placeholder in Makefile Replaced 'ml_orchestrator' with 'my_pkg' as a placeholder in the coverage and mypy commands. Added TODO comments to remind updating 'my_pkg' to the actual package name. Signed-off-by: DanielAvdar <66269169+DanielAvdar@users.noreply.github.com> --- Makefile | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/Makefile b/Makefile index b62c4f3..35e7b8f 100644 --- a/Makefile +++ b/Makefile @@ -19,7 +19,7 @@ check: uv run pre-commit run --all-files coverage: - uv run pytest --cov=ml_orchestrator --cov-report=xml + uv run pytest --cov=my_pkg --cov-report=xml # todo: change my_pkg to the actual package name mypy: uv tool run mypy my_pkg --config-file pyproject.toml # todo: chanege my_pkg to the actual package name