From bbcf6819c97fa7f09aa867cda51826d340320e3d Mon Sep 17 00:00:00 2001 From: bradyzp Date: Fri, 15 Sep 2017 11:07:07 -0600 Subject: [PATCH 001/236] Implemented simple GPS data import to flight --- dgp/gui/dialogs.py | 15 ++++--- dgp/gui/loader.py | 6 ++- dgp/gui/main.py | 62 +++++++++------------------ dgp/lib/project.py | 9 +++- tests/sample.csv | 9 ---- tests/{ => sample_data}/test_data.csv | 0 6 files changed, 42 insertions(+), 59 deletions(-) delete mode 100644 tests/sample.csv rename tests/{ => sample_data}/test_data.csv (100%) diff --git a/dgp/gui/dialogs.py b/dgp/gui/dialogs.py index c2181b7..2cd19a4 100644 --- a/dgp/gui/dialogs.py +++ b/dgp/gui/dialogs.py @@ -43,15 +43,16 @@ def __init__(self, project: prj.AirborneProject=None, flight: prj.Flight=None, * # Setup button actions self.button_browse.clicked.connect(self.browse_file) - self.buttonBox.accepted.connect(self.pre_accept) + self.buttonBox.accepted.connect(self.accept) dgsico = Qt.QIcon(':images/assets/geoid_icon.png') self.setWindowIcon(dgsico) self.path = None - self.dtype = 'gravity' + self.dtype = None self.flight = flight + # TODO: Remove project check, it cannot be None if project is not None: for flight in project: # TODO: Change dict index to human readable value @@ -99,10 +100,14 @@ def browse_file(self): self.tree_directory.scrollTo(self.file_model.index(str(self.path.resolve()))) self.tree_directory.setCurrentIndex(index) - def pre_accept(self): - self.dtype = {'GPS Data': 'gps', 'Gravity Data': 'gravity'}.get(self.group_radiotype.checkedButton().text(), 'gravity') + def accept(self): + # '&' is used to set text hints in the GUI + self.dtype = {'G&PS Data': 'gps', '&Gravity Data': 'gravity'}.get(self.group_radiotype.checkedButton().text(), + 'gravity') self.flight = self.combo_flights.currentData() - self.accept() + if self.path is None: + return + super().accept() @property def content(self) -> (Path, str, prj.Flight): diff --git a/dgp/gui/loader.py b/dgp/gui/loader.py index 9e0b10d..fca1b11 100644 --- a/dgp/gui/loader.py +++ b/dgp/gui/loader.py @@ -23,7 +23,11 @@ def __init__(self, path: pathlib.Path, datatype: str, flight_id: str, parent=Non self._functor = {'gravity': read_at1a, 'gps': import_trajectory}.get(datatype, None) def run(self): - df = self._functor(self._path) + if self._dtype == 'gps': + fields = ['mdy', 'hms', 'lat', 'long', 'ell_ht', 'ortho_ht', 'num_sats', 'pdop'] + df = self._functor(self._path, columns=fields, skiprows=1, timeformat='hms') + else: + df = self._functor(self._path) data = DataPacket(df, self._path, self._flight, self._dtype) self.data.emit(data) self.loaded.emit() diff --git a/dgp/gui/main.py b/dgp/gui/main.py index 4d9a2c3..6e753ec 100644 --- a/dgp/gui/main.py +++ b/dgp/gui/main.py @@ -12,6 +12,7 @@ from PyQt5.uic import loadUiType import dgp.lib.project as prj +import dgp.lib.trajectory_ingestor as ti from dgp.gui.loader import LoadFile from dgp.lib.plotter import LineGrabPlot from dgp.gui.utils import ConsoleHandler, LOG_FORMAT, get_project_file @@ -138,7 +139,6 @@ def load(self): # This will happen if there are no slots connected pass - def _init_plots(self) -> None: """ Initialize plots for flight objects in project. @@ -165,12 +165,10 @@ def _init_plots(self) -> None: self.gravity_stack.addWidget(widget) gravity = self.flight_data[flight.uid].get('gravity') if gravity is not None: - # self.plot_gravity(f_plot, (gravity['gravity'], [gravity['long'], gravity['cross']])) - self.plot_gravity2(f_plot, gravity, {0: 'gravity', 1: ['long', 'cross']}) + self.plot_gravity(f_plot, gravity, {0: 'gravity', 1: ['long', 'cross']}) self.log.debug("Initialized Flight Plot: {}".format(f_plot)) self.status.emit('Flight Plot {} Initialized'.format(flight.name)) self.progress.emit(i+1) - # TODO: Add hook here to update status message on a splash screen when loading def _init_slots(self): """Initialize PyQt Signals/Slots for UI Buttons and Menus""" @@ -329,35 +327,16 @@ def flight_changed(self, index: QtCore.QModelIndex) -> None: # TODO: Move this (and gps plot) into separate functions # so we can call this on app startup to pre-plot everything if grav_data is not None: - # Data series for plotting - gravity = grav_data['gravity'] # type: Series - long = grav_data['long'] - cross = grav_data['cross'] - # Experimental - so that we only have to draw the plot once, then we switch between if not curr_plot.plotted: self.log.debug("Plotting gravity channel in subplot 0") - # self.plot_gravity(curr_plot, (gravity, [long, cross])) - self.plot_gravity2(curr_plot, grav_data, {0: 'gravity', 1: ['long', 'cross']}) + self.plot_gravity(curr_plot, grav_data, {0: 'gravity', 1: ['long', 'cross']}) self.log.debug("Already plotted, switching widget stack") if gps_data is not None: - pass + self.log.debug("Flight has GPS Data") @staticmethod - def plot_gravity(plot: LineGrabPlot, data: Tuple): - # TODO: Change this to accept a dataframe for data, and a tuple of [fields] to plot in respective subplot - plot.clear() - for i, series in enumerate(data): - if not isinstance(series, List): - plot.plot(plot[i], series.index, series.values, label=series.name) - else: - for line in series: - plot.plot(plot[i], line.index, line.values, label=line.name) - - plot.draw() - plot.plotted = True - - def plot_gravity2(self, plot: LineGrabPlot, data: DataFrame, fields: Dict): + def plot_gravity(plot: LineGrabPlot, data: DataFrame, fields: Dict): plot.clear() for index in fields: if isinstance(fields[index], str): @@ -370,6 +349,9 @@ def plot_gravity2(self, plot: LineGrabPlot, data: DataFrame, fields: Dict): plot.draw() plot.plotted = True + def plot_gps(self): + pass + ##### # Project functions ##### @@ -379,22 +361,18 @@ def import_data(self) -> None: dialog = ImportData(self.project, self.current_flight) if dialog.exec_(): path, dtype, flt_id = dialog.content - if self.project is not None: - flight = self.project.get_flight(flt_id) - self.log.info("Importing {} file from {} into flight: {}".format(dtype, path, flight.uid)) - else: - flight = None - if self.project is not None: - self.log.debug("Importing file using new thread method") - ld2 = LoadFile(path, 'gravity', flight, self) - ld2.data.connect(self.project.add_data) - ld2.loaded.connect(functools.partial(self.update_project, signal_flight=True)) - ld2.loaded.connect(self.save_project) - ld2.loaded.connect(self.scan_flights) - self.current_flight = None - ld2.start() - else: - self.log.warning("No active project, not importing.") + flight = self.project.get_flight(flt_id) + self.log.critical("Data Type is: {}".format(dtype)) + self.log.info("Importing {} file from {} into flight: {}".format(dtype, path, flight.uid)) + + self.log.debug("Importing file using new thread method") + ld2 = LoadFile(path, dtype, flight, self) + ld2.data.connect(self.project.add_data) + ld2.loaded.connect(functools.partial(self.update_project, signal_flight=True)) + ld2.loaded.connect(self.save_project) + ld2.loaded.connect(self.scan_flights) + self.current_flight = None + ld2.start() # gps_fields = ['mdy', 'hms', 'lat', 'lon', 'ell_ht', 'ortho_ht', 'num_sats', 'pdop'] # self.gps_data = ti.import_trajectory(path, columns=gps_fields, skiprows=1) diff --git a/dgp/lib/project.py b/dgp/lib/project.py index faa3fe2..34c1491 100644 --- a/dgp/lib/project.py +++ b/dgp/lib/project.py @@ -370,6 +370,7 @@ def get_flight(self, flight_id): self.log.debug("Found flight {}:{}".format(flt.name, flt.uid)) return flt + # TODO: Migrate this to the ProjectTreeView class in main.py def generate_model(self) -> Tuple[QStandardItemModel, QModelIndex]: """Generate a Qt Model based on the project structure.""" model = QStandardItemModel() @@ -394,8 +395,12 @@ def generate_model(self) -> Tuple[QStandardItemModel, QModelIndex]: fli_item.setData(flight, QtCore.Qt.UserRole) gps_path, gps_uid = flight.gps_file - gps = QStandardItem("GPS: {}".format(gps_uid)) - gps.setToolTip("File Path: {}".format(gps_path)) + if gps_path is not None: + _, gps_fname = os.path.split(gps_path) + else: + gps_fname = '' + gps = QStandardItem("GPS: {}".format(gps_fname)) + gps.setToolTip("File Path: {}".format(gps_uid)) gps.setEditable(False) gps.setData(gps_uid) # For future use diff --git a/tests/sample.csv b/tests/sample.csv deleted file mode 100644 index bbd5ff8..0000000 --- a/tests/sample.csv +++ /dev/null @@ -1,9 +0,0 @@ -10062.261052, -0.084221, -0.115037, -0.093792, 62.251979, 21061, 39.690004, 52.294525,1959,219697.300 -10061.914332, -0.107825, -0.141799, -0.093793, 62.251979, 21061, 39.690004, 52.288713,1959,219697.400 -10061.270423, -0.062048, -0.135839, -0.093797, 62.252648, 21061, 39.690004, 52.273600,1959,219697.600 -10061.121829, -0.043094, -0.082552, -0.093799, 62.253318, 21061, 39.690004, 52.259650,1959,219697.700 -10061.171360, -0.026226, -0.094891, -0.093803, 62.253987, 21061, 39.690004, 52.263138,1959,219697.800 -10061.270423, -0.019431, -0.144064, -0.093807, 62.253987, 21061, 39.690004, 52.277088,1959,219697.900 -10061.419017, -0.020802, -0.138521, -0.093814, 62.252648, 21061, 39.690004, 52.295687,1959,219698.000 -10061.567612, -0.020802, -0.100315, -0.093822, 62.253318, 21061, 39.690004, 52.293363,1959,219698.100 -10061.617143, -0.019670, -0.104725, -0.093831, 62.253318, 21061, 39.690004, 52.286388,1959,219698.200 diff --git a/tests/test_data.csv b/tests/sample_data/test_data.csv similarity index 100% rename from tests/test_data.csv rename to tests/sample_data/test_data.csv From 6ec2552d8c0d146e341e2463a7f45567488c31be Mon Sep 17 00:00:00 2001 From: bradyzp Date: Sat, 16 Sep 2017 17:24:46 -0600 Subject: [PATCH 002/236] DOC: Added/converted docstrings in lib/project.py Adding numpy style docstrings and updating existing docstrings in lib/project.py. Also made a minor modification to the add_data method, adding a parameter to specify an associated flight, instead of passing the flight id in with the data object. --- dgp/gui/loader.py | 2 +- dgp/lib/project.py | 200 ++++++++++++++++++++++++++++++++++----------- dgp/lib/types.py | 7 +- 3 files changed, 155 insertions(+), 54 deletions(-) diff --git a/dgp/gui/loader.py b/dgp/gui/loader.py index fca1b11..cd37c22 100644 --- a/dgp/gui/loader.py +++ b/dgp/gui/loader.py @@ -28,6 +28,6 @@ def run(self): df = self._functor(self._path, columns=fields, skiprows=1, timeformat='hms') else: df = self._functor(self._path) - data = DataPacket(df, self._path, self._flight, self._dtype) + data = DataPacket(df, self._path, self._dtype) self.data.emit(data) self.loaded.emit() diff --git a/dgp/lib/project.py b/dgp/lib/project.py index 34c1491..5fb3b04 100644 --- a/dgp/lib/project.py +++ b/dgp/lib/project.py @@ -52,11 +52,20 @@ class GravityProject: GravityProject will be the base class defining common values for both airborne and marine gravity survey projects. """ + version = 0.1 # Used for future pickling compatability + def __init__(self, path: pathlib.Path, name: str="Untitled Project", description: str=None): """ - :param path: Project directory path - where all project files will be stored - :param name: Project name - :param description: Project description + Initializes a new GravityProject project class + + Parameters + ---------- + path : pathlib.Path + Directory which will be used to store project configuration and data files. + name : str + Human readable name to call this project. + description : str + Short description for this project. """ self.log = logging.getLogger(__name__) if isinstance(path, pathlib.Path): @@ -118,9 +127,20 @@ def meters(self): def save(self, path: pathlib.Path=None): """ - Export the project class as a pickled python object - :param path: Path to save file - :return: + Saves the project by pickling the project class and saving to a file specified by path. + + Parameters + ---------- + path : pathlib.Path, optional + Optional path object to manually specify the save location for the project class object. By default if no + path is passed to the save function, the project will be saved in the projectdir directory in a file named + for the project name, with extension .d2p + + Returns + ------- + bool + True if successful + """ if path is None: path = self.projectdir.joinpath('{}.d2p'.format(self.name)) @@ -134,8 +154,26 @@ def generate_model(self): pass @staticmethod - def load(path): - """Use python pickling to load project""" + def load(path: pathlib.Path): + """ + Loads an existing project by unpickling a previously pickled project class from a file specified by path. + + Parameters + ---------- + path : pathlib.Path + Path object referencing the binary file containing a pickled class object e.g. Path(project.d2p). + + Returns + ------- + GravityProject + Unpickled GravityProject (or descendant) object. + + Raises + ------ + FileNotFoundError + If path does not exist. + + """ if not isinstance(path, pathlib.Path): path = pathlib.Path(path) if not path.exists(): @@ -151,12 +189,33 @@ def __iter__(self): pass def __getstate__(self): - """Prune any non-pickleable objects from the class __dict__""" + """ + Used by the python pickle.dump method to determine if a class __dict__ member is 'pickleable' + + Returns + ------- + dict + Dictionary of self.__dict__ items that have been filtered using the can_pickle() function. + """ return {k: v for k, v in self.__dict__.items() if can_pickle(v)} - def __setstate__(self, state): - """Re-initialize a logger upon un-pickling""" - self.__dict__ = state + def __setstate__(self, state) -> None: + """ + Used to adjust state of the class upon loading using pickle.load. This is used to reinitialize class + attributes that could not be pickled (filtered out using __getstate__). + In future this method may be used to ensure backwards compatibility with older version project classes that + are loaded using a newer software/project version. + + Parameters + ---------- + state + Input state passed by the pickle.load function + + Returns + ------- + None + """ + self.__dict__.update(state) self.log = logging.getLogger(__name__) @@ -167,18 +226,31 @@ class Flight: """ def __init__(self, parent: GravityProject, name: str, meter: MeterConfig=None, **kwargs): """ - The Flight object represents a single literal survey flight, and accepts various parameters related to the - flight. - Currently a single GPS data and Gravity data file each may be assigned to a flight. In the future this - functionality must be expanded to handle more complex cases requiring the input of multiple data files. - At present a single gravity meter may be assigned to the flight. In future, as/if the project requires this - may be expanded to allow for a second meter to be optionally assigned. - :param parent: GravityProject - the Parent project item of this meter, used to retrieve linked data. - :param name: Str - a human readable reference name for the flight - :param meter: MeterConfig - a Gravity meter configuration object that will be associated with this flight. - :param kwargs: Optional key-word arguments may be passed to assign other attributes, e.g. date within the flight - date: a Datetime object specifying the date of the flight - uuid: a UUID string to assign to this flight (otherwise a random UUID is generated upon creation) + The Flight object represents a single literal survey flight (Takeoff -> Landing) and stores various + parameters and configurations related to the flight. + The Flight class provides an easy interface to retrieve GPS and Gravity data which has been associated with it + in the project class. + Currently a Flight tracks a single GPS and single Gravity data file, if a second file is subsequently imported + the reference to the old file will be overwritten. + In future we plan on expanding the functionality so that multiple data files might be assigned to a flight, with + various operations (comparison, merge, join) able to be performed on them. + + Parameters + ---------- + parent : GravityProject + Parent project class which this flight belongs to. This is essential as the project stores the references + to all data files which the flight may rely upon. + name : str + Human-readable reference name for this flight. + meter : MeterConfig + Gravity Meter configuration to assign to this flight. + kwargs + Arbitrary keyword arguments. + uuid : uuid.uuid + Unique identifier to assign to this flight, else a uuid will be generated upon creation using the + uuid.uuid4() method. + date : datetime.date + Datetime object to assign to this flight. """ # If uuid is passed use the value else assign new uuid # the letter 'f' is prepended to the uuid to ensure that we have a natural python name @@ -205,9 +277,6 @@ def __init__(self, parent: GravityProject, name: str, meter: MeterConfig=None, * self.flight_timeshift = 0 - # Flight data files - self.data = {} - # Flight lines keyed by UUID self.lines = {} @@ -249,16 +318,6 @@ def gravity_file(self): def get_channel_data(self, channel): return self.gravity[channel] - def set_gravity_tie(self, gravity: float, loc: Location): - self.tie_value = gravity - self.tie_location = loc - - def pre_still_reading(self, gravity: float, loc: Location, time: float): - self.pre_still_reading = StillReading(gravity, loc, time) - - def post_still_reading(self, gravity: float, loc: Location, time: float): - self.post_still_reading = StillReading(gravity, loc, time) - def add_line(self, start: float, end: float): """Add a flight line to the flight by start/stop index and sequence number""" uid = uuid.uuid4().hex @@ -268,10 +327,27 @@ def add_line(self, start: float, end: float): @staticmethod def generate_uuid(): + """ + Generates a Universally Unique ID (UUID) using the uuid.uuid4() method, and replaces the first hex digit with + 'f' to ensure the UUID conforms to python's Natural Name convention, simply meaning that the name does not start + with a number, as this raises warnings when using the UUID as a key in a Pandas dataframe or when exporting data + to an HDF5 store. + + Returns + ------- + str + 32 digit hexadecimal string unique identifier where str[0] == 'f' + """ return 'f{}'.format(uuid.uuid4().hex[1:]) def __iter__(self): - """Iterate over flight lines in the Flight instance""" + """ + Implement class iteration, allowing iteration through FlightLines in this Flight + Yields + ------- + FlightLine : NamedTuple + Next FlightLine in Flight.lines + """ for k, line in self.lines.items(): yield line @@ -324,10 +400,19 @@ def set_active(self, flight_id): def load_data(self, uid: str, prefix: str): """ - Load data from a specified group (prefix) - gps or gravity, from the projects HDF5 store. - :param str uid: Datafile Unique Identifier - :param str prefix: Data type prefix [gps or gravity] - :return: + Load data from the project HDFStore (HDF5 format datafile) by prefix and uid. + + Parameters + ---------- + uid : str + 32 digit hexadecimal unique identifier for the file to load. + prefix : str + Data type prefix, 'gps' or 'gravity' specifying the HDF5 group to retrieve the file from. + + Returns + ------- + DataFrame + Pandas DataFrame retrieved from HDFStore """ with HDFStore(str(self.hdf_path)) as store: try: @@ -337,7 +422,28 @@ def load_data(self, uid: str, prefix: str): else: return data - def add_data(self, packet: DataPacket): + def add_data(self, packet: DataPacket, flight_uid: str): + """ + Add a DataPacket to the project. + The DataPacket is simply a container for a pandas.DataFrame object, containing some additional meta-data that is + used by the project and interface. + Upon adding a DataPacket, the DataFrame is assigned a UUID and together with the data type, is exported to the + projects' HDFStore into a group specified by data type i.e. + HDFStore.put('data_type/uuid', packet.data) + The data can then be retrieved later from its respective group using its UUID. + The UUID is then stored in the Flight class's data variable for the respective data_type. + + Parameters + ---------- + packet : DataPacket(data, path, dtype) + + flight_uid : str + + + Returns + ------- + + """ """ Import a DataFrame into the project :param packet: DataPacket custom class containing file path, dataframe, data type and flight association @@ -350,14 +456,14 @@ def add_data(self, packet: DataPacket): with HDFStore(str(self.hdf_path)) as store: # Separate data into groups by data type (GPS & Gravity Data) # format: 'table' pytables format enables searching/appending, fixed is more performant. - store.put('{}/{}'.format(packet.data_type, file_uid), packet.data, format='fixed', data_columns=True) + store.put('{}/{}'.format(packet.dtype, file_uid), packet.data, format='fixed', data_columns=True) # Store a reference to the original file path self.data_map[file_uid] = packet.path try: - flight = self.flights[packet.flight.uid] - if packet.data_type == 'gravity': + flight = self.flights[flight_uid] + if packet.dtype == 'gravity': flight.gravity = file_uid - elif packet.data_type == 'gps': + elif packet.dtype == 'gps': flight.gps = file_uid except KeyError: return False diff --git a/dgp/lib/types.py b/dgp/lib/types.py index bea2c30..871f7b1 100644 --- a/dgp/lib/types.py +++ b/dgp/lib/types.py @@ -19,9 +19,4 @@ DataCurve = namedtuple('DataCurve', ['channel', 'data']) -class DataPacket: - def __init__(self, data, path, flight, data_type, *args, **kwargs): - self.data = data - self.path = path - self.flight = flight - self.data_type = data_type \ No newline at end of file +DataPacket = namedtuple('DataPacket', ['data', 'path', 'dtype']) From 70a5ad8298a46e5af8a2b106ff3452967cc99ccd Mon Sep 17 00:00:00 2001 From: bradyzp Date: Sat, 16 Sep 2017 19:40:05 -0600 Subject: [PATCH 003/236] ENH: Improved behavior of data import code Enhanced data import code in main.py, and the behavior relating to the project tree view. After importing a file the flight which it was imported to will automatically be selected as the active plot, and the plot will be redrawn. This also resulted in cleaning up the project.py:AirborneProject class, removing the generate_model() method, which is now reimplemented in the main:ProjectTreeView class, which allows for easier selecting of flights by QModelIndex and vice versa. Lastly, the Flight data lookup (properties) was improved by having the Flight object cache DataFrames that had been loaded once in an instance variable, instead of reloading from the HDFStore on every call. --- dgp/gui/main.py | 236 ++++++++++++++++++++++++-------------- dgp/gui/ui/main_window.ui | 61 ++++++++-- dgp/lib/project.py | 168 ++++++++++----------------- 3 files changed, 270 insertions(+), 195 deletions(-) diff --git a/dgp/gui/main.py b/dgp/gui/main.py index 6e753ec..80940c0 100644 --- a/dgp/gui/main.py +++ b/dgp/gui/main.py @@ -8,7 +8,7 @@ from pandas import Series, DataFrame from PyQt5 import QtCore, QtWidgets, QtGui from PyQt5.QtCore import pyqtSignal, pyqtBoundSignal -from PyQt5.QtGui import QColor +from PyQt5.QtGui import QColor, QStandardItemModel, QStandardItem, QIcon from PyQt5.uic import loadUiType import dgp.lib.project as prj @@ -58,7 +58,6 @@ def __init__(self, project: prj.GravityProject=None, *args): # Setup Project self.project = project - # self.update_project() # See http://doc.qt.io/qt-5/stylesheet-examples.html#customizing-qtreeview # Set Stylesheet customizations for GUI Window @@ -112,15 +111,13 @@ def __init__(self, project: prj.GravityProject=None, *args): # TODO: Change this to use pathlib.Path self.import_base_path = os.path.join(os.getcwd(), '../tests') - # Lock object used as simple Flag supporting the context manager protocol self.current_flight = None # type: prj.Flight - self.flight_data = {} # Stores DataFrames for loaded flights + self.current_flight_index = QtCore.QModelIndex() # type: QtCore.QModelIndex + self.tree_index = None # type: QtCore.QModelIndex self.flight_plots = {} # Stores plotter objects for flights - # self.plot_curves = None # Initialized in self.init_plot() # TESTING - self.project_tree = ProjectTreeView(parent=self) - self.scan_flights() + self.project_tree = ProjectTreeView(parent=self, project=self.project) # self.data_tab_layout.addWidget(self.project_tree) self.gridLayout_2.addWidget(self.project_tree, 1, 0, 1, 2) # TESTING @@ -128,15 +125,15 @@ def __init__(self, project: prj.GravityProject=None, *args): def load(self): self._init_plots() self._init_slots() - self.update_project(signal_flight=True) + # self.update_project(signal_flight=True) + self.project_tree.refresh() self.setWindowState(QtCore.Qt.WindowMaximized) self.save_project() self.show() try: self.progress.disconnect() self.status.disconnect() - except TypeError: - # This will happen if there are no slots connected + except TypeError: # This will happen if there are no slots connected pass def _init_plots(self) -> None: @@ -151,25 +148,35 @@ def _init_plots(self) -> None: self.progress.emit(0) if self.project is None: return - for i, flight in enumerate(self.project): # type: prj.Flight + for i, flight in enumerate(self.project): # type: int, prj.Flight if flight.uid in self.flight_plots: continue - vlayout = QtWidgets.QVBoxLayout() - f_plot = LineGrabPlot(2, title=flight.name) - toolbar = f_plot.get_toolbar() - widget = QtWidgets.QWidget() - vlayout.addWidget(f_plot) - vlayout.addWidget(toolbar) - widget.setLayout(vlayout) - self.flight_plots[flight.uid] = f_plot, widget + + plot, widget = self._new_plot_widget(flight.name, rows=2) + + self.flight_plots[flight.uid] = plot, widget self.gravity_stack.addWidget(widget) - gravity = self.flight_data[flight.uid].get('gravity') + gravity = flight.gravity if gravity is not None: - self.plot_gravity(f_plot, gravity, {0: 'gravity', 1: ['long', 'cross']}) - self.log.debug("Initialized Flight Plot: {}".format(f_plot)) + self.plot_gravity(plot, gravity, {0: 'gravity', 1: ['long', 'cross']}) + self.log.debug("Initialized Flight Plot: {}".format(plot)) self.status.emit('Flight Plot {} Initialized'.format(flight.name)) self.progress.emit(i+1) + @staticmethod + def _new_plot_widget(title, rows=2): + plot = LineGrabPlot(rows, title=title) + plot_toolbar = plot.get_toolbar() + + layout = QtWidgets.QVBoxLayout() + layout.addWidget(plot) + layout.addWidget(plot_toolbar) + + widget = QtWidgets.QWidget() + widget.setLayout(layout) + + return plot, widget + def _init_slots(self): """Initialize PyQt Signals/Slots for UI Buttons and Menus""" @@ -185,8 +192,6 @@ def _init_slots(self): # Project Tree View Actions # # self.prj_tree.doubleClicked.connect(self.log_tree) - # self.prj_tree.clicked.connect(self.flight_changed) - # self.prj_tree.currentItemChanged(self.update_channels) self.project_tree.clicked.connect(self.flight_changed) # Project Control Buttons # @@ -237,7 +242,8 @@ def set_logging_level(self, name: str): def write_console(self, text, level): """PyQt Slot: Log a message to the GUI console""" log_color = {'DEBUG': QColor('Blue'), 'INFO': QColor('Green'), 'WARNING': QColor('Red'), - 'ERROR': QColor('Pink'), 'CRITICAL': QColor('Orange')}.get(level, QColor('Black')) + 'ERROR': QColor('Pink'), 'CRITICAL': QColor( + 'Orange')}.get(level.upper(), QColor('Black')) self.text_console.setTextColor(log_color) self.text_console.append(str(text)) @@ -269,20 +275,17 @@ def log_tree(self, index: QtCore.QModelIndex): # Plot functions ##### - def scan_flights(self): - """Scan flights and load data into self.flight_data""" - self.log.info("Rescanning and loading flight data.") - for flight in self.project: - if flight.uid not in self.flight_data: - self.flight_data[flight.uid] = {'gravity': flight.gravity, 'gps': flight.gps} - else: - self.flight_data[flight.uid].update({'gravity': flight.gravity, 'gps': flight.gps}) - def flight_changed(self, index: QtCore.QModelIndex) -> None: """ PyQt Slot called upon change in flight selection using the Project Tree View. When a new flight is selected we want to plot the gravity channel in subplot 0, with cross and long in subplot 1 GPS data will be plotted in the GPS tab on its own plot. + + Logic: + If item @ index is not a Flight object Then return + If current_flight == item.data() @ index, Then return + + Parameters ---------- index : QtCore.QModelIndex @@ -293,13 +296,14 @@ def flight_changed(self, index: QtCore.QModelIndex) -> None: None """ + self.tree_index = index qitem = self.project_tree.model().itemFromIndex(index) # type: QtGui.QStandardItem if qitem is None: return qitem_data = qitem.data(QtCore.Qt.UserRole) if not isinstance(qitem_data, prj.Flight): - # Return as we're not interested in handling non-flight selections at this time + # Return as we're not interested in handling non-flight selections return None else: flight = qitem_data # type: prj.Flight @@ -316,25 +320,27 @@ def flight_changed(self, index: QtCore.QModelIndex) -> None: # Check if there is a plot for this flight already if self.flight_plots.get(flight.uid, None) is not None: - self.log.debug("Already have a plot for this flight: {}".format(flight.name)) curr_plot, stack_widget = self.flight_plots[flight.uid] # type: LineGrabPlot + self.log.info("Switching widget stack") self.gravity_stack.setCurrentWidget(stack_widget) - pass - - grav_data = self.flight_data[flight.uid].get('gravity', None) - gps_data = self.flight_data[flight.uid].get('gps', None) + else: + self.log.error("No plot for this flight found.") + return # TODO: Move this (and gps plot) into separate functions # so we can call this on app startup to pre-plot everything - if grav_data is not None: + if flight.gravity is not None: if not curr_plot.plotted: - self.log.debug("Plotting gravity channel in subplot 0") - self.plot_gravity(curr_plot, grav_data, {0: 'gravity', 1: ['long', 'cross']}) - self.log.debug("Already plotted, switching widget stack") + self.plot_gravity(curr_plot, flight.gravity, {0: 'gravity', 1: ['long', 'cross']}) - if gps_data is not None: + if flight.gps is not None: self.log.debug("Flight has GPS Data") + def redraw(self, flt_id: str): + plot, _ = self.flight_plots[flt_id] + flt = self.project.get_flight(flt_id) # type: prj.Flight + self.plot_gravity(plot, flt.gravity, {0: 'gravity', 1: ['long', 'cross']}) + @staticmethod def plot_gravity(plot: LineGrabPlot, data: DataFrame, fields: Dict): plot.clear() @@ -357,22 +363,26 @@ def plot_gps(self): ##### def import_data(self) -> None: - """Load data file (GPS or Gravity) using a background Thread, then hand it off to the project.""" + """Load data file (GPS or Gravity) using a background Thread, then hand + it off to the project.""" dialog = ImportData(self.project, self.current_flight) if dialog.exec_(): path, dtype, flt_id = dialog.content flight = self.project.get_flight(flt_id) - self.log.critical("Data Type is: {}".format(dtype)) + plot, _ = self.flight_plots[flt_id] + plot.plotted = False self.log.info("Importing {} file from {} into flight: {}".format(dtype, path, flight.uid)) - self.log.debug("Importing file using new thread method") - ld2 = LoadFile(path, dtype, flight, self) - ld2.data.connect(self.project.add_data) - ld2.loaded.connect(functools.partial(self.update_project, signal_flight=True)) - ld2.loaded.connect(self.save_project) - ld2.loaded.connect(self.scan_flights) - self.current_flight = None - ld2.start() + loader = LoadFile(path, dtype, flight, self) + add_data = functools.partial(self.project.add_data, flight_uid=flight.uid) + + loader.data.connect(add_data) + loader.loaded.connect(functools.partial(self.project_tree.refresh, + curr_flightid=flt_id)) + loader.loaded.connect(functools.partial(self.redraw, flt_id)) + loader.loaded.connect(self.save_project) + + loader.start() # gps_fields = ['mdy', 'hms', 'lat', 'lon', 'ell_ht', 'ortho_ht', 'num_sats', 'pdop'] # self.gps_data = ti.import_trajectory(path, columns=gps_fields, skiprows=1) @@ -391,7 +401,8 @@ def new_project(self) -> QtWidgets.QMainWindow: self.project.save() self.update_project() - # TODO: This will eventually require a dialog to allow selection of project type + # TODO: This will eventually require a dialog to allow selection of project type, or + # a metadata file in the project directory specifying type info def open_project(self) -> None: path = QtWidgets.QFileDialog.getExistingDirectory(self, "Open Project Directory", os.path.abspath('..')) if not path: @@ -401,25 +412,11 @@ def open_project(self) -> None: if prj_file is None: self.log.warning("No project file's found in directory: {}".format(path)) return - self.project.save() + self.save_project() self.project = prj.AirborneProject.load(prj_file) self.update_project() return - def update_project(self, signal_flight=False) -> None: - self.log.debug("Update project called") - if self.project is None: - return - # self.prj_tree.setModel(self.project.generate_model()) - # self.prj_tree.expandAll() - model, index = self.project.generate_model() - # self.project_tree.refresh(index) - self.project_tree.setModel(model) - self.project_tree.expandAll() - self.project_tree.setCurrentIndex(index) - if signal_flight: - self.flight_changed(index) - def save_project(self) -> None: if self.project is None: return @@ -432,23 +429,27 @@ def save_project(self) -> None: @autosave def add_flight(self) -> None: - # TODO: do I need these checks? self.project should not ever be None - if self.project is None: - return dialog = AddFlight(self.project) if dialog.exec_(): self.log.info("Adding flight:") flight = dialog.flight self.project.add_flight(flight) - self.update_project() - self.scan_flights() - self._init_plots() + plot, widget = self._new_plot_widget(flight.name, rows=2) + self.gravity_stack.addWidget(widget) + self.flight_plots[flight.uid] = plot, widget + self.project_tree.refresh(curr_flightid=flight.uid) return class ProjectTreeView(QtWidgets.QTreeView): - def __init__(self, model=None, project=None, parent=None): + def __init__(self, project=None, parent=None): super().__init__(parent=parent) + + self._project = project + # Dict indexes to store [flight_uid] = QItemIndex + self._indexes = {} + self.log = logging.getLogger(__name__) + self.setMinimumSize(QtCore.QSize(0, 300)) self.setAlternatingRowColors(True) self.setAutoExpandDelay(1) @@ -461,15 +462,84 @@ def __init__(self, model=None, project=None, parent=None): # self.setModel(model) # self.expandAll() - def refresh(self, curr_index=None): + def refresh(self, curr_index=None, curr_flightid=None): """Regenerate model and set current selection to curr_index""" - # self.generate_airborne_model() + model, index = self.generate_airborne_model(self._project) + self.setModel(model) if curr_index is not None: - self.setCurrentIndex(curr_index) + index = curr_index + elif curr_flightid is not None: + index = self._indexes[curr_flightid] + + self.setCurrentIndex(index) + self.clicked.emit(index) self.expandAll() - def generate_airborne_model(self): - pass + def generate_airborne_model(self, project: prj.GravityProject): + """Generate a Qt Model based on the project structure.""" + model = QStandardItemModel() + root = model.invisibleRootItem() + + flight_items = {} # Used to find indexes after creation + + dgs_ico = QIcon(':images/assets/dgs_icon.xpm') + flt_ico = QIcon(':images/assets/flight_icon.png') + + prj_header = QStandardItem(dgs_ico, + "{name}: {path}".format(name=project.name, + path=project.projectdir)) + prj_header.setEditable(False) + fli_header = QStandardItem(flt_ico, "Flights") + fli_header.setEditable(False) + first_flight = None + for uid, flight in project.flights.items(): + fli_item = QStandardItem(flt_ico, "Flight: {}".format(flight.name)) + flight_items[flight.uid] = fli_item + if first_flight is None: + first_flight = fli_item + fli_item.setToolTip("UUID: {}".format(uid)) + fli_item.setEditable(False) + fli_item.setData(flight, QtCore.Qt.UserRole) + + gps_path, gps_uid = flight.gps_file + if gps_path is not None: + _, gps_fname = os.path.split(gps_path) + else: + gps_fname = '' + gps = QStandardItem("GPS: {}".format(gps_fname)) + gps.setToolTip("File Path: {}".format(gps_uid)) + gps.setEditable(False) + gps.setData(gps_uid) # For future use + + grav_path, grav_uid = flight.gravity_file + if grav_path is not None: + _, grav_fname = os.path.split(grav_path) + else: + grav_fname = '' + grav = QStandardItem("Gravity: {}".format(grav_fname)) + grav.setToolTip("File Path: {}".format(grav_path)) + grav.setEditable(False) + grav.setData(grav_uid) # For future use + + fli_item.appendRow(gps) + fli_item.appendRow(grav) + + for line in flight: + line_item = QStandardItem("Line {}:{}".format(line.start, line.end)) + line_item.setEditable(False) + fli_item.appendRow(line_item) + fli_header.appendRow(fli_item) + prj_header.appendRow(fli_header) + + root.appendRow(prj_header) + self.log.debug("Tree Model generated") + first_index = model.indexFromItem(first_flight) + + # for uid, item in flight_items.items(): + # self._indexes[uid] = model.indexFromItem(item) + self._indexes = {uid: model.indexFromItem(item) for uid, item in flight_items.items()} + + return model, first_index def contextMenuEvent(self, event: QtGui.QContextMenuEvent, *args, **kwargs): context_ind = self.indexAt(event.pos()) diff --git a/dgp/gui/ui/main_window.ui b/dgp/gui/ui/main_window.ui index 03e092c..63d86cc 100644 --- a/dgp/gui/ui/main_window.ui +++ b/dgp/gui/ui/main_window.ui @@ -33,10 +33,22 @@ Qt::Vertical + + 8 + - false + true - + + + + 0 + 3 + + + + QFrame::StyledPanel + @@ -74,12 +86,33 @@ + + true + + + + 0 + 0 + + 0 100 + + + 0 + 200 + + + + QFrame::StyledPanel + + + QFrame::Plain + @@ -147,13 +180,13 @@ 0 - 100 + 80 - 5000 - 400 + 16777215 + 16777215 @@ -338,8 +371,8 @@ - 300 - 800 + 16777215 + 16777215 @@ -402,6 +435,20 @@ + + + toolBar + + + false + + + TopToolBarArea + + + false + + Documentation diff --git a/dgp/lib/project.py b/dgp/lib/project.py index 5fb3b04..2319c5f 100644 --- a/dgp/lib/project.py +++ b/dgp/lib/project.py @@ -5,13 +5,8 @@ import pickle import pathlib import logging -from typing import Tuple - -from pandas import HDFStore -from PyQt5 import QtCore -from PyQt5.QtGui import QStandardItemModel, QStandardItem, QIcon -from PyQt5.QtCore import QModelIndex +from pandas import HDFStore, DataFrame from dgp.lib.meterconfig import MeterConfig, AT1Meter from dgp.lib.types import Location, StillReading, FlightLine, DataPacket @@ -44,6 +39,8 @@ def can_pickle(attribute): # TODO: As necessary change this to check against a list of un-pickleable types if isinstance(attribute, logging.Logger): return False + if isinstance(attribute, DataFrame): + return False return True @@ -90,7 +87,30 @@ def __init__(self, path: pathlib.Path, name: str="Untitled Project", description self.log.debug("Gravity Project Initialized") def load_data(self, uid: str, prefix: str): - pass + """ + Load data from the project HDFStore (HDF5 format datafile) by prefix and uid. + + Parameters + ---------- + uid : str + 32 digit hexadecimal unique identifier for the file to load. + prefix : str + Data type prefix, 'gps' or 'gravity' specifying the HDF5 group to retrieve the file from. + + Returns + ------- + DataFrame + Pandas DataFrame retrieved from HDFStore + """ + self.log.info("Loading data <{}>/{} from HDFStore".format(prefix, uid)) + with HDFStore(str(self.hdf_path)) as store: + try: + data = store.get('{}/{}'.format(prefix, uid)) + except KeyError: + self.log.warning("No data exists for key: {}".format(uid)) + return None + else: + return data def add_meter(self, meter: MeterConfig) -> MeterConfig: """Add an existing MeterConfig class to the dictionary of available meters""" @@ -150,9 +170,6 @@ def save(self, path: pathlib.Path=None): pickle.dump(self, f) return True - def generate_model(self): - pass - @staticmethod def load(path: pathlib.Path): """ @@ -265,8 +282,11 @@ def __init__(self, parent: GravityProject, name: str, meter: MeterConfig=None, * self.log = logging.getLogger(__name__) # These private attributes will hold a file reference string used to retrieve data from hdf5 store. - self._gpsdata = None # type: str - self._gravdata = None # type: str + self._gpsdata_uid = None # type: str + self._gravdata_uid = None # type: str + + self._gpsdata = None # type: DataFrame + self._gravdata = None # type: DataFrame # Known Absolute Site Reading/Location self.tie_value = None @@ -282,36 +302,55 @@ def __init__(self, parent: GravityProject, name: str, meter: MeterConfig=None, * @property def gps(self): - return self.parent.load_data(self._gpsdata, 'gps') + if self._gpsdata_uid is None: + return + if self._gpsdata is None: + self.log.warning("Loading gps data from HDFStore.") + self._gpsdata = self.parent.load_data(self._gpsdata_uid, 'gps') + return self._gpsdata @gps.setter def gps(self, value): - if self._gpsdata: + if self._gpsdata_uid: self.log.warning('GPS Data File already exists, overwriting with new value.') - self._gpsdata = value + self._gpsdata_uid = value @property def gps_file(self): try: - return self.parent.data_map[self._gpsdata], self._gpsdata + return self.parent.data_map[self._gpsdata_uid], self._gpsdata_uid except KeyError: return None, None @property def gravity(self): - self.log.warning("Loading gravity data from file. (Expensive Operation)") - return self.parent.load_data(self._gravdata, 'gravity') + """ + Property accessor for Gravity data. This accessor will cache loaded + gravity data in an instance variable so that subsequent lookups do + not require an I/O operation. + Returns + ------- + DataFrame + pandas DataFrame containing Gravity Data + """ + if self._gravdata_uid is None: + return + if self._gravdata is None: + self.log.warning("Loading gravity data from HDFStore.") + self._gravdata = self.parent.load_data(self._gravdata_uid, + 'gravity') + return self._gravdata @gravity.setter def gravity(self, value): - if self._gravdata: + if self._gravdata_uid: self.log.warning('Gravity Data File already exists, overwriting with new value.') - self._gravdata = value + self._gravdata_uid = value @property def gravity_file(self): try: - return self.parent.data_map[self._gravdata], self._gravdata + return self.parent.data_map[self._gravdata_uid], self._gravdata_uid except KeyError: return None, None @@ -374,8 +413,10 @@ def __getstate__(self): return {k: v for k, v in self.__dict__.items() if can_pickle(v)} def __setstate__(self, state): - self.__dict__ = state + self.__dict__.update(state) self.log = logging.getLogger(__name__) + self._gravdata = None + self._gpsdata = None class AirborneProject(GravityProject): @@ -398,30 +439,6 @@ def set_active(self, flight_id): flight = self.get_flight(flight_id) self.active = flight - def load_data(self, uid: str, prefix: str): - """ - Load data from the project HDFStore (HDF5 format datafile) by prefix and uid. - - Parameters - ---------- - uid : str - 32 digit hexadecimal unique identifier for the file to load. - prefix : str - Data type prefix, 'gps' or 'gravity' specifying the HDF5 group to retrieve the file from. - - Returns - ------- - DataFrame - Pandas DataFrame retrieved from HDFStore - """ - with HDFStore(str(self.hdf_path)) as store: - try: - data = store.get('{}/{}'.format(prefix, uid)) - except KeyError: - return None - else: - return data - def add_data(self, packet: DataPacket, flight_uid: str): """ Add a DataPacket to the project. @@ -476,65 +493,6 @@ def get_flight(self, flight_id): self.log.debug("Found flight {}:{}".format(flt.name, flt.uid)) return flt - # TODO: Migrate this to the ProjectTreeView class in main.py - def generate_model(self) -> Tuple[QStandardItemModel, QModelIndex]: - """Generate a Qt Model based on the project structure.""" - model = QStandardItemModel() - root = model.invisibleRootItem() - - # TODO: Add these icon resources to library or something so they are not loaded every time - dgs_ico = QIcon('ui/assets/DGSIcon.xpm') - flt_ico = QIcon('ui/assets/flight_icon.png') - - prj_header = QStandardItem(dgs_ico, "{name}: {path}".format(name=self.name, path=self.projectdir)) - prj_header.setEditable(False) - fli_header = QStandardItem(flt_ico, "Flights") - fli_header.setEditable(False) - # TODO: Add a human readable identifier to flights - first_flight = None - for uid, flight in self.flights.items(): - fli_item = QStandardItem(flt_ico, "Flight: {}".format(flight.name)) - if first_flight is None: - first_flight = fli_item - fli_item.setToolTip("UUID: {}".format(uid)) - fli_item.setEditable(False) - fli_item.setData(flight, QtCore.Qt.UserRole) - - gps_path, gps_uid = flight.gps_file - if gps_path is not None: - _, gps_fname = os.path.split(gps_path) - else: - gps_fname = '' - gps = QStandardItem("GPS: {}".format(gps_fname)) - gps.setToolTip("File Path: {}".format(gps_uid)) - gps.setEditable(False) - gps.setData(gps_uid) # For future use - - grav_path, grav_uid = flight.gravity_file - if grav_path is not None: - _, grav_fname = os.path.split(grav_path) - else: - grav_fname = '' - grav = QStandardItem("Gravity: {}".format(grav_fname)) - grav.setToolTip("File Path: {}".format(grav_path)) - grav.setEditable(False) - grav.setData(grav_uid) # For future use - - fli_item.appendRow(gps) - fli_item.appendRow(grav) - - for line in flight: - line_item = QStandardItem("Line {}:{}".format(line.start, line.end)) - line_item.setEditable(False) - fli_item.appendRow(line_item) - fli_header.appendRow(fli_item) - prj_header.appendRow(fli_header) - - root.appendRow(prj_header) - self.log.debug("Tree Model generated") - first_index = model.indexFromItem(first_flight) - return model, first_index - def __iter__(self): for uid, flight in self.flights.items(): yield flight From acdceefe29393ee696a44c27597027824a52f09e Mon Sep 17 00:00:00 2001 From: bradyzp Date: Sun, 17 Sep 2017 20:32:20 -0600 Subject: [PATCH 004/236] ENH: Add GUI enhancements and new functionality. Icons and Toolbar. Added toolbar with common actions, and new icons for actions. Added new InfoDialog class to present object information using a table view and model. Added new assets/icons. --- dgp/gui/dialogs.py | 83 +- dgp/gui/main.py | 35 +- dgp/gui/ui/assets/folder_open.png | Bin 0 -> 397 bytes dgp/gui/ui/assets/meter_config.png | Bin 0 -> 615 bytes dgp/gui/ui/assets/new_project.png | Bin 0 -> 718 bytes dgp/gui/ui/assets/save_project.png | Bin 0 -> 227 bytes dgp/gui/ui/info_dialog.ui | 67 + dgp/gui/ui/main_window.ui | 627 +++--- dgp/gui/ui/resources.qrc | 4 + dgp/lib/plotter.py | 24 +- dgp/lib/project.py | 24 +- dgp/resources_rc.py | 2954 +++++++++++++++------------- tests/test_project.py | 3 +- 13 files changed, 2107 insertions(+), 1714 deletions(-) create mode 100644 dgp/gui/ui/assets/folder_open.png create mode 100644 dgp/gui/ui/assets/meter_config.png create mode 100644 dgp/gui/ui/assets/new_project.png create mode 100644 dgp/gui/ui/assets/save_project.png create mode 100644 dgp/gui/ui/info_dialog.ui diff --git a/dgp/gui/dialogs.py b/dgp/gui/dialogs.py index 2cd19a4..965eca1 100644 --- a/dgp/gui/dialogs.py +++ b/dgp/gui/dialogs.py @@ -15,6 +15,9 @@ data_dialog, _ = loadUiType('dgp/gui/ui/data_import_dialog.ui') +flight_dialog, _ = loadUiType('dgp/gui/ui/add_flight_dialog.ui') +project_dialog, _ = loadUiType('dgp/gui/ui/project_dialog.ui') +info_dialog, _ = loadUiType('dgp/gui/ui/info_dialog.ui') class ImportData(QtWidgets.QDialog, data_dialog): @@ -52,20 +55,13 @@ def __init__(self, project: prj.AirborneProject=None, flight: prj.Flight=None, * self.dtype = None self.flight = flight - # TODO: Remove project check, it cannot be None - if project is not None: - for flight in project: - # TODO: Change dict index to human readable value - self.combo_flights.addItem(flight.name, flight.uid) - if flight == self.flight: # scroll to this item if it matches self.flight - self.combo_flights.setCurrentIndex(self.combo_flights.count() - 1) - for meter in project.meters: - self.combo_meters.addItem(meter.name) - else: - self.combo_flights.setEnabled(False) - self.combo_meters.setEnabled(False) - self.combo_flights.addItem("") - self.combo_meters.addItem("") + for flight in project: + # TODO: Change dict index to human readable value + self.combo_flights.addItem(flight.name, flight.uid) + if flight == self.flight: # scroll to this item if it matches self.flight + self.combo_flights.setCurrentIndex(self.combo_flights.count() - 1) + for meter in project.meters: + self.combo_meters.addItem(meter.name) self.file_model = Qt.QFileSystemModel() self.init_tree() @@ -114,9 +110,6 @@ def content(self) -> (Path, str, prj.Flight): return self.path, self.dtype, self.flight -flight_dialog, _ = loadUiType('dgp/gui/ui/add_flight_dialog.ui') - - class AddFlight(QtWidgets.QDialog, flight_dialog): def __init__(self, project, *args): super().__init__(*args) @@ -129,7 +122,6 @@ def __init__(self, project, *args): self.text_uuid.setText(self._uid) def accept(self): - # TODO: Change test meter to actual meter qdate = self.date_flight.date() # type: QtCore.QDate date = datetime.date(qdate.year(), qdate.month(), qdate.day()) self._flight = prj.Flight(self._project, self.text_name.text(), self._project.get_meter( @@ -141,9 +133,6 @@ def flight(self): return self._flight -project_dialog, _ = loadUiType('dgp/gui/ui/project_dialog.ui') - - class CreateProject(QtWidgets.QDialog, project_dialog): def __init__(self, *args): super().__init__(*args) @@ -205,3 +194,55 @@ def select_dir(self): @property def project(self): return self._project + + +class InfoDialog(QtWidgets.QDialog, info_dialog): + def __init__(self, model, parent=None, **kwargs): + super().__init__(parent=parent, **kwargs) + self.setupUi(self) + self.setModel(model) + + def setModel(self, model): + table = self.table_info # type: QtWidgets.QTableView + table.setModel(model) + table.resizeColumnsToContents() + width = 50 + for col_idx in range(table.colorCount()): + width += table.columnWidth(col_idx) + self.resize(width, self.height()) + + +class InfoModel(QtCore.QAbstractTableModel): + """Simple table model of key: value pairs.""" + def __init__(self, parent=None): + super().__init__(parent=parent) + # A list of 2-tuples (key: value pairs) which will be the table rows + self._data = [] + + def set_object(self, obj): + """Populates the model with key, value pairs from the passed objects' __dict__""" + for key, value in obj.__dict__.items(): + self.add_row(key, value) + + def add_row(self, key, value): + self._data.append((str(key), repr(value))) + + # Required implementations of super class (for a basic, non-editable table) + + def rowCount(self, parent=None, *args, **kwargs): + return len(self._data) + + def columnCount(self, parent=None, *args, **kwargs): + return 2 + + def data(self, index: QtCore.QModelIndex, role=None): + if role == QtCore.Qt.DisplayRole: + return self._data[index.row()][index.column()] + return QtCore.QVariant() + + def flags(self, index: QtCore.QModelIndex): + return QtCore.Qt.ItemIsSelectable | QtCore.Qt.ItemIsEnabled + + def headerData(self, section, orientation, role=None): + if role == QtCore.Qt.DisplayRole and orientation == QtCore.Qt.Horizontal: + return ['Key', 'Value'][section] diff --git a/dgp/gui/main.py b/dgp/gui/main.py index 80940c0..67a8d3c 100644 --- a/dgp/gui/main.py +++ b/dgp/gui/main.py @@ -16,7 +16,7 @@ from dgp.gui.loader import LoadFile from dgp.lib.plotter import LineGrabPlot from dgp.gui.utils import ConsoleHandler, LOG_FORMAT, get_project_file -from dgp.gui.dialogs import ImportData, AddFlight, CreateProject +from dgp.gui.dialogs import ImportData, AddFlight, CreateProject, InfoDialog, InfoModel # Load .ui form main_window, _ = loadUiType('dgp/gui/ui/main_window.ui') @@ -116,11 +116,9 @@ def __init__(self, project: prj.GravityProject=None, *args): self.tree_index = None # type: QtCore.QModelIndex self.flight_plots = {} # Stores plotter objects for flights - # TESTING self.project_tree = ProjectTreeView(parent=self, project=self.project) - # self.data_tab_layout.addWidget(self.project_tree) - self.gridLayout_2.addWidget(self.project_tree, 1, 0, 1, 2) - # TESTING + self.project_tree.setMinimumWidth(290) + self.project_dock_grid.addWidget(self.project_tree, 0, 0, 1, 2) def load(self): self._init_plots() @@ -475,7 +473,7 @@ def refresh(self, curr_index=None, curr_flightid=None): self.clicked.emit(index) self.expandAll() - def generate_airborne_model(self, project: prj.GravityProject): + def generate_airborne_model(self, project: prj.AirborneProject): """Generate a Qt Model based on the project structure.""" model = QStandardItemModel() root = model.invisibleRootItem() @@ -488,6 +486,7 @@ def generate_airborne_model(self, project: prj.GravityProject): prj_header = QStandardItem(dgs_ico, "{name}: {path}".format(name=project.name, path=project.projectdir)) + prj_header.setData(project, QtCore.Qt.UserRole) prj_header.setEditable(False) fli_header = QStandardItem(flt_ico, "Flights") fli_header.setEditable(False) @@ -531,6 +530,12 @@ def generate_airborne_model(self, project: prj.GravityProject): fli_header.appendRow(fli_item) prj_header.appendRow(fli_header) + meter_header = QStandardItem("Meters") + for meter in project.meters: # type: prj.AT1Meter + meter_item = QStandardItem("{}".format(meter.name)) + meter_header.appendRow(meter_item) + prj_header.appendRow(meter_header) + root.appendRow(prj_header) self.log.debug("Tree Model generated") first_index = model.indexFromItem(first_flight) @@ -556,14 +561,10 @@ def contextMenuEvent(self, event: QtGui.QContextMenuEvent, *args, **kwargs): event.accept() def flight_info(self, item): - data = item.getData(QtCore.Qt.UserRole) - if isinstance(data, prj.Flight): - dialog = QtWidgets.QDialog(self) - dialog.setLayout(QtWidgets.QVBoxLayout()) - dialog.exec_() - print("Flight info: {}".format(item.text())) - else: - print("Info event: Not a flight") - - - + data = item.data(QtCore.Qt.UserRole) + if not (isinstance(data, prj.Flight) or isinstance(data, prj.GravityProject)): + return + model = InfoModel() + model.set_object(data) + dialog = InfoDialog(model, parent=self) + dialog.exec_() diff --git a/dgp/gui/ui/assets/folder_open.png b/dgp/gui/ui/assets/folder_open.png new file mode 100644 index 0000000000000000000000000000000000000000..aa3569d8b244d9c9ea23825904bbed655bae8dee GIT binary patch literal 397 zcmV;80doF{P) z=a|pWvASEKjmxVGkyB8oUtBNb^nmAiqzr#S=`~H0vIp7@uhYw(g3phyX%$Ol))>Ek zYM{opZCWsm1;WGA<1>vXw}DrBS(b&N1cBe{3LfZX7zT7*#}Lvi#eTozGoY&KQKSVw z@KF>6cN4yevOtHg-`89PkcBOPttbnd%{Q_v3u3n?fRoWVR!PYK?rLfstA=o4qmVzn$ z1h#^uVD1{5oJj;ri*yzVLxC_8W7ym_-4a9OX{ z?@&Q1l`?QZOnfqm1C>ezWHOmR_|gs}p#pK@fY9M1ci?t(heL4w!#=JIn0qMZrS1Os zcR@OxMyXUn@>>E140JjjtX3vc%fRYqTB6axm?m2{2tu|WhQh872g_-2Fm3!2$x_woub)nVm_avR;$4@ z^~A^6&i)d>HU0x<&cVG7^?E&IG8z1NeT&iqN)uY}q19@M6XFJj!yyQRsUrhtvgZ3T zo6SI;o*re*Blm$Rvl@@bv^!`C#03eg)*j$MV!JxH3b&}NC3lP3_3Ax;uL$5wcuCq7 zK|9JyYZE>IIA#0Efc*3$o6YV#-^0LnP07G70NmSq&x~EbZ0NvnoA4Pxkq>US+Y+)M zSX7di7XVk=S^bQ99NTLyCj=9?bBjn4KYevv@^5c*Vl* z%$GO3H#5ntRx6xla`1x{kvIT>4A4_X2|`VZeTw251MYAjFnOCC06o!1dftZO)ALKv z+@9_EMZT$WD9mIV&&~npp 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316 + 260 + + + 286 + 274 + + + + + diff --git a/dgp/gui/ui/main_window.ui b/dgp/gui/ui/main_window.ui index 63d86cc..331b37a 100644 --- a/dgp/gui/ui/main_window.ui +++ b/dgp/gui/ui/main_window.ui @@ -29,272 +29,51 @@ - - - Qt::Vertical + + + + 0 + 3 + - - 8 + + QFrame::StyledPanel - - true - - - - - 0 - 3 - - - - QFrame::StyledPanel - - - - - - - 0 - 500 - - - - 0 - - - - Gravity - - - - - - - - - - GPS - - - - - - - - - - - - - - true - - - - 0 - 0 - - - - - 0 - 100 - - - - - 0 - 200 - - - - QFrame::StyledPanel - - - QFrame::Plain - - - - - - - 1 - 0 - - - - QFrame::StyledPanel - - - QFrame::Raised - - + + + + + + 0 + 500 + + + + 0 + + + + Gravity + + - - - true - - - - 1 - 0 - - - - true - - - - - - Selection Info - - + - - - - - - 2 - 0 - - - - QFrame::StyledPanel - - - QFrame::Raised - - + + + GPS + + - - - - 0 - 0 - - - - - 0 - 80 - - - - - 16777215 - 16777215 - - - - - - - - - 160 - 160 - 160 - - - - - - - - - 160 - 160 - 160 - - - - - - - - - 240 - 240 - 240 - - - - - - - - true - - - QFrame::StyledPanel - - - true - - - - - - - - - - Debug - - - - - Info - - - - - Warning - - - - - Error - - - - - Critical - - - - - - - - - 100 - 16777215 - - - - Clear - - - - - - - <html><head/><body><p align="right">Logging Level:</p></body></html> - - - - + - - - + + + @@ -328,8 +107,9 @@ Panels - + + @@ -353,12 +133,12 @@ true - + true - + 0 0 @@ -371,8 +151,8 @@ - 16777215 - 16777215 + 300 + 524287 @@ -384,10 +164,16 @@ 1 - + + + + 0 + 0 + + - + 5 @@ -402,14 +188,7 @@ - - - - Project Tree: - - - - + Add Flight @@ -420,13 +199,21 @@ - - - - QFrame::StyledPanel + + + + Project Tree: + + + + + + + Add Meter - - QFrame::Raised + + + :/images/assets/meter_config.png:/images/assets/meter_config.png @@ -437,7 +224,7 @@ - toolBar + Toolbar false @@ -448,6 +235,223 @@ false + + + + + + + + + + + + + 0 + 0 + + + + + 0 + 0 + + + + QDockWidget::AllDockWidgetFeatures + + + Qt::BottomDockWidgetArea|Qt::TopDockWidgetArea + + + Info/Console + + + 8 + + + + + 0 + 0 + + + + + + + + 2 + 0 + + + + + 2 + 0 + + + + QFrame::StyledPanel + + + QFrame::Raised + + + + + + + 0 + 0 + + + + + 0 + 80 + + + + + 16777215 + 16777215 + + + + + + + + + 160 + 160 + 160 + + + + + + + + + 160 + 160 + 160 + + + + + + + + + 240 + 240 + 240 + + + + + + + + true + + + QFrame::StyledPanel + + + true + + + + + + + + + + Debug + + + + + Info + + + + + Warning + + + + + Error + + + + + Critical + + + + + + + + + 100 + 16777215 + + + + Clear + + + + + + + <html><head/><body><p align="right">Logging Level:</p></body></html> + + + + + + + + + + + + true + + + + 1 + 0 + + + + + 1 + 0 + + + + true + + + + + + Selection Info + + + + + @@ -465,7 +469,7 @@ Ctrl+Q - + true @@ -473,7 +477,7 @@ true - Channels + Project Alt+1 @@ -494,6 +498,10 @@ + + + :/images/assets/new_project.png:/images/assets/new_project.png + New Project... @@ -502,6 +510,10 @@ + + + :/images/assets/folder_open.png:/images/assets/folder_open.png + Open Project @@ -510,6 +522,10 @@ + + + :/images/assets/save_project.png:/images/assets/save_project.png + Save Project @@ -518,6 +534,10 @@ + + + :/images/assets/flight_icon.png:/images/assets/flight_icon.png + Add Flight @@ -526,6 +546,10 @@ + + + :/images/assets/meter_config.png:/images/assets/meter_config.png + Add Meter @@ -542,6 +566,10 @@ + + + :/images/assets/geoid_icon.png:/images/assets/geoid_icon.png + Import Data @@ -549,19 +577,32 @@ Ctrl+O + + + true + + + true + + + Console + + + Alt+3 + + prj_add_flight - dataPlotTabWidget - action_channel_dock + action_project_dock toggled(bool) - channelDock + project_dock setVisible(bool) @@ -575,9 +616,9 @@ - channelDock + project_dock visibilityChanged(bool) - action_channel_dock + action_project_dock setChecked(bool) @@ -590,5 +631,21 @@ + + action_info_dock + toggled(bool) + info_dock + setVisible(bool) + + + -1 + -1 + + + 744 + 990 + + + diff --git a/dgp/gui/ui/resources.qrc b/dgp/gui/ui/resources.qrc index fbbe3e0..ff7e88b 100644 --- a/dgp/gui/ui/resources.qrc +++ b/dgp/gui/ui/resources.qrc @@ -1,5 +1,9 @@ + assets/meter_config.png + assets/folder_open.png + assets/new_project.png + assets/save_project.png assets/branch-closed.png assets/branch-open.png assets/boat_icon.png diff --git a/dgp/lib/plotter.py b/dgp/lib/plotter.py index 3a4accd..c68aef9 100644 --- a/dgp/lib/plotter.py +++ b/dgp/lib/plotter.py @@ -91,7 +91,10 @@ def __len__(self): class LineGrabPlot(BasePlottingCanvas): - """ LineGrabPlot implements BasePlottingCanvas and provides an onclick method to select flight line segments.""" + """ + LineGrabPlot implements BasePlottingCanvas and provides an onclick method to select flight + line segments. + """ def __init__(self, n=1, parent=None, title=None): BasePlottingCanvas.__init__(self, parent=parent) self.rects = [] @@ -107,11 +110,12 @@ def clear(self): for ax in self._axes: # type: Axes ax.cla() ax.grid(True) + # Reconnect the xlim_changed callback after clearing ax.callbacks.connect('xlim_changed', self._on_xlim_changed) self.draw() def onclick(self, event: MouseEvent): - if self.zooming or self.panning: # Don't do anything when zooming is enabled + if self.zooming or self.panning: # Don't do anything when zooming/panning is enabled return # Check that the click event happened within one of the subplot axes @@ -126,7 +130,6 @@ def onclick(self, event: MouseEvent): patch = partners[0]['rect'] if patch.get_x() <= event.xdata <= patch.get_x() + patch.get_width(): # Then we clicked an existing rectangle - print("Clicked on existing rectangle {}, with partners: {}".format(repr(patch), partners[1:])) x0, _ = patch.xy self.clicked = ClickInfo(partners, x0, event.xdata, event.ydata) @@ -140,7 +143,6 @@ def onclick(self, event: MouseEvent): return # else: Create a new rectangle on all axes - print("Creating new rectangles") ylim = caxes.get_ylim() # type: Tuple xlim = caxes.get_xlim() # type: Tuple width = (xlim[1] - xlim[0]) * np.float64(0.01) @@ -150,13 +152,10 @@ def onclick(self, event: MouseEvent): height = ylim[1] - ylim[0] c_rect = Rectangle((x0, y0), width, height*2, alpha=0.1) - print("Adding rectangle to c_axes: {}".format(caxes)) caxes.add_patch(c_rect) partners = [{'rect': c_rect, 'bg': None}] for ax in other_axes: - - print("Adding rectangle to axes: {}".format(ax)) x0 = event.xdata - width/2 ylim = ax.get_ylim() y0 = ylim[0] @@ -167,20 +166,18 @@ def onclick(self, event: MouseEvent): self.rects.append(partners) self.figure.canvas.draw() - self.draw() + # self.draw() return def toggle_zoom(self): if self.panning: self.panning = False self.zooming = not self.zooming - print("Toggling zoom, state: {}".format(self.zooming)) def toggle_pan(self): if self.zooming: self.zooming = False self.panning = not self.panning - print("Toggling pan") def onmotion(self, event: MouseEvent): if event.inaxes not in self._axes: @@ -203,10 +200,13 @@ def onrelease(self, event: MouseEvent): return # Nothing Selected partners = self.clicked.partners for attrs in partners: - attrs['rect'].set_animated(False) + rect = attrs['rect'] + rect.set_animated(False) + rect.axes.draw_artist(rect) attrs['bg'] = None + self.clicked = None - self.draw() + # self.draw() def plot(self, ax: Axes, xdata, ydata, **kwargs): ax.plot(xdata, ydata, **kwargs) diff --git a/dgp/lib/project.py b/dgp/lib/project.py index 2319c5f..c9568fd 100644 --- a/dgp/lib/project.py +++ b/dgp/lib/project.py @@ -82,7 +82,7 @@ def __init__(self, path: pathlib.Path, name: str="Untitled Project", description self.hdf_path = self.projectdir.joinpath('prjdata.h5') # Store MeterConfig objects in dictionary keyed by the meter name - self.sensors = {} + self._sensors = {} self.log.debug("Gravity Project Initialized") @@ -115,13 +115,13 @@ def load_data(self, uid: str, prefix: str): def add_meter(self, meter: MeterConfig) -> MeterConfig: """Add an existing MeterConfig class to the dictionary of available meters""" if isinstance(meter, MeterConfig): - self.sensors[meter.name] = meter - return self.sensors[meter.name] + self._sensors[meter.name] = meter + return self._sensors[meter.name] else: raise ValueError("meter parameter is not an instance of MeterConfig") - def get_meter(self, name) -> MeterConfig: - return self.sensors.get(name, None) + def get_meter(self, name): + return self._sensors.get(name, None) def import_meter(self, path: pathlib.Path): """Import a meter configuration from an ini file and add it to the sensors dict""" @@ -129,21 +129,19 @@ def import_meter(self, path: pathlib.Path): if path.exists(): try: meter = AT1Meter.from_ini(path) - self.sensors[meter.name] = meter + self._sensors[meter.name] = meter except ValueError: raise ValueError("Meter .ini file could not be imported, check format.") else: - return self.sensors[meter.name] + return self._sensors[meter.name] else: raise OSError("Path {} doesn't exist.".format(path)) @property def meters(self): """Return list of meter names assigned to this project.""" - if not self.sensors: - return [] - else: - return list(self.sensors.keys()) + for meter in self._sensors.values(): + yield meter def save(self, path: pathlib.Path=None): """ @@ -277,6 +275,7 @@ def __init__(self, parent: GravityProject, name: str, meter: MeterConfig=None, * self.uid = kwargs.get('uuid', self.generate_uuid()) self.meter = meter if 'date' in kwargs: + print("Setting date to: {}".format(kwargs['date'])) self.date = kwargs['date'] self.log = logging.getLogger(__name__) @@ -394,7 +393,8 @@ def __len__(self): return len(self.lines) def __repr__(self): - return "Flight({parent}, {name}, {meter})".format(parent=self.parent, name=self.name, meter=self.meter) + return "".format(parent=self.parent, name=self.name, + meter=self.meter) def __str__(self): if self.meter is not None: diff --git a/dgp/resources_rc.py b/dgp/resources_rc.py index 8e79d49..890d383 100644 --- a/dgp/resources_rc.py +++ b/dgp/resources_rc.py @@ -9,38 +9,134 @@ from PyQt5 import QtCore qt_resource_data = b"\ -\x00\x00\x01\xde\ +\x00\x00\x02\xce\ \x89\ 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-\x33\x31\x32\x34\x35\x46\x22\x2c\x0a\x22\x59\x20\x09\x63\x20\x23\ -\x32\x46\x32\x32\x36\x30\x22\x2c\x0a\x22\x5a\x20\x09\x63\x20\x23\ -\x32\x30\x31\x33\x35\x37\x22\x2c\x0a\x22\x60\x20\x09\x63\x20\x23\ -\x32\x36\x31\x39\x35\x42\x22\x2c\x0a\x22\x20\x2e\x09\x63\x20\x23\ -\x32\x46\x32\x32\x35\x45\x22\x2c\x0a\x22\x2e\x2e\x09\x63\x20\x23\ -\x33\x31\x32\x34\x36\x31\x22\x2c\x0a\x22\x2b\x2e\x09\x63\x20\x23\ -\x32\x44\x32\x30\x35\x45\x22\x2c\x0a\x22\x40\x2e\x09\x63\x20\x23\ -\x33\x33\x32\x38\x36\x32\x22\x2c\x0a\x22\x23\x2e\x09\x63\x20\x23\ -\x32\x46\x32\x34\x36\x30\x22\x2c\x0a\x22\x24\x2e\x09\x63\x20\x23\ -\x32\x32\x31\x38\x35\x41\x22\x2c\x0a\x22\x25\x2e\x09\x63\x20\x23\ -\x37\x36\x36\x46\x39\x37\x22\x2c\x0a\x22\x26\x2e\x09\x63\x20\x23\ -\x44\x35\x44\x33\x44\x45\x22\x2c\x0a\x22\x2a\x2e\x09\x63\x20\x23\ -\x42\x37\x43\x41\x44\x36\x22\x2c\x0a\x22\x3d\x2e\x09\x63\x20\x23\ -\x32\x39\x36\x31\x38\x42\x22\x2c\x0a\x22\x2d\x2e\x09\x63\x20\x23\ -\x43\x46\x44\x42\x45\x33\x22\x2c\x0a\x22\x3b\x2e\x09\x63\x20\x23\ -\x44\x39\x44\x36\x44\x45\x22\x2c\x0a\x22\x3e\x2e\x09\x63\x20\x23\ -\x38\x32\x37\x38\x39\x42\x22\x2c\x0a\x22\x2c\x2e\x09\x63\x20\x23\ -\x32\x34\x31\x38\x35\x39\x22\x2c\x0a\x22\x27\x2e\x09\x63\x20\x23\ -\x32\x39\x31\x44\x35\x43\x22\x2c\x0a\x22\x29\x2e\x09\x63\x20\x23\ -\x32\x30\x31\x34\x35\x38\x22\x2c\x0a\x22\x21\x2e\x09\x63\x20\x23\ -\x33\x32\x32\x34\x35\x46\x22\x2c\x0a\x22\x7e\x2e\x09\x63\x20\x23\ -\x33\x34\x32\x36\x36\x30\x22\x2c\x0a\x22\x7b\x2e\x09\x63\x20\x23\ -\x32\x44\x32\x30\x35\x43\x22\x2c\x0a\x22\x5d\x2e\x09\x63\x20\x23\ -\x32\x32\x31\x36\x35\x41\x22\x2c\x0a\x22\x5e\x2e\x09\x63\x20\x23\ -\x32\x36\x31\x39\x35\x41\x22\x2c\x0a\x22\x2f\x2e\x09\x63\x20\x23\ -\x33\x34\x32\x36\x36\x31\x22\x2c\x0a\x22\x28\x2e\x09\x63\x20\x23\ -\x32\x39\x31\x43\x35\x43\x22\x2c\x0a\x22\x5f\x2e\x09\x63\x20\x23\ -\x33\x36\x32\x39\x36\x31\x22\x2c\x0a\x22\x3a\x2e\x09\x63\x20\x23\ -\x33\x37\x32\x41\x36\x32\x22\x2c\x0a\x22\x3c\x2e\x09\x63\x20\x23\ -\x33\x34\x32\x38\x36\x32\x22\x2c\x0a\x22\x5b\x2e\x09\x63\x20\x23\ -\x32\x44\x32\x32\x35\x46\x22\x2c\x0a\x22\x7d\x2e\x09\x63\x20\x23\ -\x32\x35\x31\x39\x35\x42\x22\x2c\x0a\x22\x7c\x2e\x09\x63\x20\x23\ -\x32\x31\x31\x35\x35\x41\x22\x2c\x0a\x22\x31\x2e\x09\x63\x20\x23\ -\x35\x41\x35\x30\x38\x31\x22\x2c\x0a\x22\x32\x2e\x09\x63\x20\x23\ -\x43\x36\x43\x33\x44\x33\x22\x2c\x0a\x22\x33\x2e\x09\x63\x20\x23\ -\x46\x44\x46\x44\x46\x44\x22\x2c\x0a\x22\x34\x2e\x09\x63\x20\x23\ -\x37\x34\x39\x38\x42\x33\x22\x2c\x0a\x22\x35\x2e\x09\x63\x20\x23\ -\x35\x37\x38\x33\x41\x33\x22\x2c\x0a\x22\x36\x2e\x09\x63\x20\x23\ -\x46\x35\x46\x37\x46\x38\x22\x2c\x0a\x22\x37\x2e\x09\x63\x20\x23\ -\x37\x34\x36\x41\x38\x45\x22\x2c\x0a\x22\x38\x2e\x09\x63\x20\x23\ -\x33\x43\x32\x45\x36\x35\x22\x2c\x0a\x22\x39\x2e\x09\x63\x20\x23\ -\x32\x44\x31\x46\x35\x44\x22\x2c\x0a\x22\x30\x2e\x09\x63\x20\x23\ -\x32\x33\x31\x35\x35\x38\x22\x2c\x0a\x22\x61\x2e\x09\x63\x20\x23\ -\x31\x45\x31\x33\x35\x36\x22\x2c\x0a\x22\x62\x2e\x09\x63\x20\x23\ -\x32\x43\x31\x46\x35\x44\x22\x2c\x0a\x22\x63\x2e\x09\x63\x20\x23\ -\x33\x34\x32\x37\x36\x30\x22\x2c\x0a\x22\x64\x2e\x09\x63\x20\x23\ -\x33\x30\x32\x32\x35\x45\x22\x2c\x0a\x22\x65\x2e\x09\x63\x20\x23\ -\x33\x38\x32\x42\x36\x32\x22\x2c\x0a\x22\x66\x2e\x09\x63\x20\x23\ -\x32\x44\x32\x34\x35\x46\x22\x2c\x0a\x22\x67\x2e\x09\x63\x20\x23\ -\x32\x34\x31\x41\x35\x42\x22\x2c\x0a\x22\x68\x2e\x09\x63\x20\x23\ -\x32\x33\x31\x36\x35\x41\x22\x2c\x0a\x22\x69\x2e\x09\x63\x20\x23\ -\x35\x37\x34\x45\x38\x31\x22\x2c\x0a\x22\x6a\x2e\x09\x63\x20\x23\ -\x39\x41\x41\x34\x42\x43\x22\x2c\x0a\x22\x6b\x2e\x09\x63\x20\x23\ -\x32\x44\x36\x35\x38\x45\x22\x2c\x0a\x22\x6c\x2e\x09\x63\x20\x23\ -\x39\x46\x42\x38\x43\x39\x22\x2c\x0a\x22\x6d\x2e\x09\x63\x20\x23\ -\x37\x37\x36\x45\x39\x35\x22\x2c\x0a\x22\x6e\x2e\x09\x63\x20\x23\ -\x33\x42\x32\x42\x36\x33\x22\x2c\x0a\x22\x6f\x2e\x09\x63\x20\x23\ -\x32\x41\x31\x44\x35\x43\x22\x2c\x0a\x22\x70\x2e\x09\x63\x20\x23\ -\x32\x33\x31\x36\x35\x42\x22\x2c\x0a\x22\x71\x2e\x09\x63\x20\x23\ -\x32\x31\x31\x35\x35\x38\x22\x2c\x0a\x22\x72\x2e\x09\x63\x20\x23\ -\x33\x38\x32\x41\x36\x32\x22\x2c\x0a\x22\x73\x2e\x09\x63\x20\x23\ -\x33\x35\x32\x41\x36\x33\x22\x2c\x0a\x22\x74\x2e\x09\x63\x20\x23\ -\x32\x35\x31\x42\x35\x43\x22\x2c\x0a\x22\x75\x2e\x09\x63\x20\x23\ -\x32\x30\x31\x34\x35\x37\x22\x2c\x0a\x22\x76\x2e\x09\x63\x20\x23\ -\x32\x38\x34\x38\x37\x42\x22\x2c\x0a\x22\x77\x2e\x09\x63\x20\x23\ -\x34\x36\x37\x37\x39\x41\x22\x2c\x0a\x22\x78\x2e\x09\x63\x20\x23\ -\x45\x39\x45\x45\x46\x31\x22\x2c\x0a\x22\x79\x2e\x09\x63\x20\x23\ -\x43\x38\x44\x36\x44\x46\x22\x2c\x0a\x22\x7a\x2e\x09\x63\x20\x23\ -\x38\x42\x38\x33\x41\x32\x22\x2c\x0a\x22\x41\x2e\x09\x63\x20\x23\ -\x32\x42\x31\x45\x35\x45\x22\x2c\x0a\x22\x42\x2e\x09\x63\x20\x23\ -\x32\x31\x31\x34\x35\x38\x22\x2c\x0a\x22\x43\x2e\x09\x63\x20\x23\ -\x32\x41\x32\x30\x35\x45\x22\x2c\x0a\x22\x44\x2e\x09\x63\x20\x23\ -\x32\x36\x31\x43\x35\x43\x22\x2c\x0a\x22\x45\x2e\x09\x63\x20\x23\ -\x31\x42\x32\x33\x36\x31\x22\x2c\x0a\x22\x46\x2e\x09\x63\x20\x23\ -\x30\x43\x34\x34\x37\x37\x22\x2c\x0a\x22\x47\x2e\x09\x63\x20\x23\ -\x35\x30\x36\x35\x38\x46\x22\x2c\x0a\x22\x48\x2e\x09\x63\x20\x23\ -\x45\x42\x45\x41\x45\x46\x22\x2c\x0a\x22\x49\x2e\x09\x63\x20\x23\ -\x44\x35\x44\x46\x45\x35\x22\x2c\x0a\x22\x4a\x2e\x09\x63\x20\x23\ -\x37\x46\x41\x31\x42\x38\x22\x2c\x0a\x22\x4b\x2e\x09\x63\x20\x23\ -\x38\x32\x41\x34\x42\x39\x22\x2c\x0a\x22\x4c\x2e\x09\x63\x20\x23\ -\x41\x45\x41\x39\x42\x45\x22\x2c\x0a\x22\x4d\x2e\x09\x63\x20\x23\ -\x32\x46\x32\x31\x35\x44\x22\x2c\x0a\x22\x4e\x2e\x09\x63\x20\x23\ -\x32\x34\x31\x38\x35\x41\x22\x2c\x0a\x22\x4f\x2e\x09\x63\x20\x23\ -\x32\x31\x31\x36\x35\x41\x22\x2c\x0a\x22\x50\x2e\x09\x63\x20\x23\ -\x32\x30\x31\x37\x35\x41\x22\x2c\x0a\x22\x51\x2e\x09\x63\x20\x23\ -\x31\x31\x33\x37\x36\x46\x22\x2c\x0a\x22\x52\x2e\x09\x63\x20\x23\ -\x31\x30\x33\x37\x37\x30\x22\x2c\x0a\x22\x53\x2e\x09\x63\x20\x23\ -\x32\x30\x31\x37\x35\x42\x22\x2c\x0a\x22\x54\x2e\x09\x63\x20\x23\ -\x39\x30\x38\x41\x41\x41\x22\x2c\x0a\x22\x55\x2e\x09\x63\x20\x23\ -\x43\x45\x44\x41\x45\x32\x22\x2c\x0a\x22\x56\x2e\x09\x63\x20\x23\ -\x39\x44\x42\x36\x43\x37\x22\x2c\x0a\x22\x57\x2e\x09\x63\x20\x23\ -\x38\x46\x41\x43\x43\x30\x22\x2c\x0a\x22\x58\x2e\x09\x63\x20\x23\ -\x42\x46\x43\x45\x44\x39\x22\x2c\x0a\x22\x59\x2e\x09\x63\x20\x23\ -\x43\x43\x44\x39\x45\x31\x22\x2c\x0a\x22\x5a\x2e\x09\x63\x20\x23\ -\x36\x33\x35\x38\x38\x33\x22\x2c\x0a\x22\x60\x2e\x09\x63\x20\x23\ -\x33\x35\x32\x36\x36\x31\x22\x2c\x0a\x22\x20\x2b\x09\x63\x20\x23\ -\x33\x34\x32\x35\x36\x31\x22\x2c\x0a\x22\x2e\x2b\x09\x63\x20\x23\ -\x32\x43\x31\x45\x35\x44\x22\x2c\x0a\x22\x2b\x2b\x09\x63\x20\x23\ -\x32\x35\x31\x41\x35\x43\x22\x2c\x0a\x22\x40\x2b\x09\x63\x20\x23\ -\x32\x33\x31\x38\x35\x42\x22\x2c\x0a\x22\x23\x2b\x09\x63\x20\x23\ -\x32\x30\x31\x34\x35\x39\x22\x2c\x0a\x22\x24\x2b\x09\x63\x20\x23\ -\x31\x38\x32\x43\x36\x38\x22\x2c\x0a\x22\x25\x2b\x09\x63\x20\x23\ -\x30\x43\x34\x34\x37\x39\x22\x2c\x0a\x22\x26\x2b\x09\x63\x20\x23\ -\x31\x41\x32\x34\x36\x33\x22\x2c\x0a\x22\x2a\x2b\x09\x63\x20\x23\ -\x33\x39\x32\x46\x36\x39\x22\x2c\x0a\x22\x3d\x2b\x09\x63\x20\x23\ -\x41\x32\x41\x38\x42\x45\x22\x2c\x0a\x22\x2d\x2b\x09\x63\x20\x23\ -\x38\x44\x41\x42\x42\x46\x22\x2c\x0a\x22\x3b\x2b\x09\x63\x20\x23\ -\x41\x39\x42\x46\x43\x45\x22\x2c\x0a\x22\x3e\x2b\x09\x63\x20\x23\ -\x39\x37\x42\x31\x43\x33\x22\x2c\x0a\x22\x2c\x2b\x09\x63\x20\x23\ -\x39\x39\x39\x32\x41\x45\x22\x2c\x0a\x22\x27\x2b\x09\x63\x20\x23\ -\x33\x37\x32\x38\x36\x31\x22\x2c\x0a\x22\x29\x2b\x09\x63\x20\x23\ -\x33\x36\x32\x38\x36\x32\x22\x2c\x0a\x22\x21\x2b\x09\x63\x20\x23\ -\x32\x37\x31\x42\x35\x42\x22\x2c\x0a\x22\x7e\x2b\x09\x63\x20\x23\ -\x32\x35\x31\x39\x35\x41\x22\x2c\x0a\x22\x7b\x2b\x09\x63\x20\x23\ -\x32\x30\x31\x35\x35\x38\x22\x2c\x0a\x22\x5d\x2b\x09\x63\x20\x23\ -\x32\x39\x31\x44\x35\x44\x22\x2c\x0a\x22\x5e\x2b\x09\x63\x20\x23\ -\x32\x45\x32\x32\x35\x46\x22\x2c\x0a\x22\x2f\x2b\x09\x63\x20\x23\ -\x33\x30\x32\x34\x35\x46\x22\x2c\x0a\x22\x28\x2b\x09\x63\x20\x23\ -\x33\x33\x32\x37\x36\x32\x22\x2c\x0a\x22\x5f\x2b\x09\x63\x20\x23\ -\x33\x34\x32\x38\x36\x31\x22\x2c\x0a\x22\x3a\x2b\x09\x63\x20\x23\ -\x32\x46\x32\x33\x35\x46\x22\x2c\x0a\x22\x3c\x2b\x09\x63\x20\x23\ -\x32\x34\x31\x38\x35\x43\x22\x2c\x0a\x22\x5b\x2b\x09\x63\x20\x23\ -\x31\x46\x31\x32\x35\x36\x22\x2c\x0a\x22\x7d\x2b\x09\x63\x20\x23\ -\x31\x45\x31\x32\x35\x36\x22\x2c\x0a\x22\x7c\x2b\x09\x63\x20\x23\ -\x31\x42\x31\x46\x35\x46\x22\x2c\x0a\x22\x31\x2b\x09\x63\x20\x23\ -\x30\x46\x34\x33\x37\x37\x22\x2c\x0a\x22\x32\x2b\x09\x63\x20\x23\ -\x31\x35\x33\x31\x36\x43\x22\x2c\x0a\x22\x33\x2b\x09\x63\x20\x23\ -\x37\x37\x36\x46\x39\x37\x22\x2c\x0a\x22\x34\x2b\x09\x63\x20\x23\ -\x43\x45\x44\x39\x45\x31\x22\x2c\x0a\x22\x35\x2b\x09\x63\x20\x23\ -\x36\x44\x39\x34\x41\x45\x22\x2c\x0a\x22\x36\x2b\x09\x63\x20\x23\ -\x34\x32\x37\x34\x39\x38\x22\x2c\x0a\x22\x37\x2b\x09\x63\x20\x23\ -\x34\x45\x37\x44\x39\x44\x22\x2c\x0a\x22\x38\x2b\x09\x63\x20\x23\ -\x43\x31\x44\x30\x44\x39\x22\x2c\x0a\x22\x39\x2b\x09\x63\x20\x23\ -\x35\x34\x34\x39\x37\x41\x22\x2c\x0a\x22\x30\x2b\x09\x63\x20\x23\ -\x33\x35\x32\x38\x36\x31\x22\x2c\x0a\x22\x61\x2b\x09\x63\x20\x23\ -\x33\x33\x32\x36\x36\x31\x22\x2c\x0a\x22\x62\x2b\x09\x63\x20\x23\ -\x33\x37\x32\x39\x36\x32\x22\x2c\x0a\x22\x63\x2b\x09\x63\x20\x23\ -\x32\x33\x31\x37\x35\x41\x22\x2c\x0a\x22\x64\x2b\x09\x63\x20\x23\ -\x32\x45\x32\x31\x35\x45\x22\x2c\x0a\x22\x65\x2b\x09\x63\x20\x23\ -\x32\x37\x31\x45\x35\x45\x22\x2c\x0a\x22\x66\x2b\x09\x63\x20\x23\ -\x33\x35\x32\x37\x36\x31\x22\x2c\x0a\x22\x67\x2b\x09\x63\x20\x23\ -\x32\x42\x31\x46\x35\x44\x22\x2c\x0a\x22\x68\x2b\x09\x63\x20\x23\ -\x32\x33\x31\x37\x35\x38\x22\x2c\x0a\x22\x69\x2b\x09\x63\x20\x23\ -\x31\x46\x31\x36\x35\x39\x22\x2c\x0a\x22\x6a\x2b\x09\x63\x20\x23\ -\x31\x32\x33\x36\x36\x46\x22\x2c\x0a\x22\x6b\x2b\x09\x63\x20\x23\ -\x31\x30\x33\x43\x37\x33\x22\x2c\x0a\x22\x6c\x2b\x09\x63\x20\x23\ -\x32\x30\x31\x42\x35\x44\x22\x2c\x0a\x22\x6d\x2b\x09\x63\x20\x23\ -\x33\x35\x32\x39\x36\x37\x22\x2c\x0a\x22\x6e\x2b\x09\x63\x20\x23\ -\x43\x35\x43\x33\x44\x31\x22\x2c\x0a\x22\x6f\x2b\x09\x63\x20\x23\ -\x44\x39\x45\x32\x45\x37\x22\x2c\x0a\x22\x70\x2b\x09\x63\x20\x23\ -\x37\x46\x41\x30\x42\x38\x22\x2c\x0a\x22\x71\x2b\x09\x63\x20\x23\ -\x33\x46\x37\x30\x39\x34\x22\x2c\x0a\x22\x72\x2b\x09\x63\x20\x23\ -\x39\x43\x42\x35\x43\x36\x22\x2c\x0a\x22\x73\x2b\x09\x63\x20\x23\ -\x41\x42\x41\x35\x42\x42\x22\x2c\x0a\x22\x74\x2b\x09\x63\x20\x23\ -\x33\x32\x32\x33\x35\x46\x22\x2c\x0a\x22\x75\x2b\x09\x63\x20\x23\ -\x33\x34\x32\x37\x36\x31\x22\x2c\x0a\x22\x76\x2b\x09\x63\x20\x23\ -\x32\x34\x31\x38\x35\x42\x22\x2c\x0a\x22\x77\x2b\x09\x63\x20\x23\ -\x32\x32\x31\x37\x35\x42\x22\x2c\x0a\x22\x78\x2b\x09\x63\x20\x23\ -\x32\x41\x31\x45\x35\x43\x22\x2c\x0a\x22\x79\x2b\x09\x63\x20\x23\ -\x35\x45\x35\x35\x38\x33\x22\x2c\x0a\x22\x7a\x2b\x09\x63\x20\x23\ -\x38\x34\x37\x44\x39\x45\x22\x2c\x0a\x22\x41\x2b\x09\x63\x20\x23\ -\x35\x39\x34\x45\x37\x43\x22\x2c\x0a\x22\x42\x2b\x09\x63\x20\x23\ -\x33\x35\x32\x38\x36\x32\x22\x2c\x0a\x22\x43\x2b\x09\x63\x20\x23\ -\x33\x32\x32\x35\x36\x31\x22\x2c\x0a\x22\x44\x2b\x09\x63\x20\x23\ -\x33\x30\x32\x33\x36\x30\x22\x2c\x0a\x22\x45\x2b\x09\x63\x20\x23\ -\x33\x35\x32\x39\x36\x34\x22\x2c\x0a\x22\x46\x2b\x09\x63\x20\x23\ -\x31\x41\x33\x31\x36\x42\x22\x2c\x0a\x22\x47\x2b\x09\x63\x20\x23\ -\x31\x30\x34\x37\x37\x41\x22\x2c\x0a\x22\x48\x2b\x09\x63\x20\x23\ -\x32\x30\x32\x41\x36\x36\x22\x2c\x0a\x22\x49\x2b\x09\x63\x20\x23\ -\x31\x46\x31\x32\x35\x37\x22\x2c\x0a\x22\x4a\x2b\x09\x63\x20\x23\ -\x32\x34\x31\x37\x35\x42\x22\x2c\x0a\x22\x4b\x2b\x09\x63\x20\x23\ -\x32\x34\x31\x37\x35\x43\x22\x2c\x0a\x22\x4c\x2b\x09\x63\x20\x23\ -\x38\x34\x37\x45\x41\x31\x22\x2c\x0a\x22\x4d\x2b\x09\x63\x20\x23\ -\x36\x39\x38\x46\x41\x41\x22\x2c\x0a\x22\x4e\x2b\x09\x63\x20\x23\ -\x41\x33\x42\x41\x43\x42\x22\x2c\x0a\x22\x4f\x2b\x09\x63\x20\x23\ -\x44\x31\x44\x44\x45\x34\x22\x2c\x0a\x22\x50\x2b\x09\x63\x20\x23\ -\x42\x36\x43\x39\x44\x35\x22\x2c\x0a\x22\x51\x2b\x09\x63\x20\x23\ -\x37\x39\x36\x46\x39\x33\x22\x2c\x0a\x22\x52\x2b\x09\x63\x20\x23\ -\x34\x30\x33\x33\x36\x41\x22\x2c\x0a\x22\x53\x2b\x09\x63\x20\x23\ -\x39\x39\x39\x33\x41\x45\x22\x2c\x0a\x22\x54\x2b\x09\x63\x20\x23\ -\x41\x44\x41\x39\x42\x45\x22\x2c\x0a\x22\x55\x2b\x09\x63\x20\x23\ -\x41\x41\x41\x36\x42\x44\x22\x2c\x0a\x22\x56\x2b\x09\x63\x20\x23\ -\x41\x39\x41\x35\x42\x44\x22\x2c\x0a\x22\x57\x2b\x09\x63\x20\x23\ -\x41\x31\x39\x43\x42\x37\x22\x2c\x0a\x22\x58\x2b\x09\x63\x20\x23\ -\x38\x43\x38\x37\x41\x38\x22\x2c\x0a\x22\x59\x2b\x09\x63\x20\x23\ -\x36\x31\x35\x39\x38\x38\x22\x2c\x0a\x22\x5a\x2b\x09\x63\x20\x23\ -\x32\x39\x31\x45\x35\x46\x22\x2c\x0a\x22\x60\x2b\x09\x63\x20\x23\ -\x32\x39\x31\x44\x35\x42\x22\x2c\x0a\x22\x20\x40\x09\x63\x20\x23\ -\x33\x35\x32\x41\x36\x37\x22\x2c\x0a\x22\x2e\x40\x09\x63\x20\x23\ -\x34\x39\x33\x46\x37\x36\x22\x2c\x0a\x22\x2b\x40\x09\x63\x20\x23\ -\x35\x33\x34\x39\x37\x45\x22\x2c\x0a\x22\x40\x40\x09\x63\x20\x23\ -\x34\x42\x34\x30\x37\x35\x22\x2c\x0a\x22\x23\x40\x09\x63\x20\x23\ -\x36\x30\x35\x36\x38\x32\x22\x2c\x0a\x22\x24\x40\x09\x63\x20\x23\ -\x44\x44\x44\x43\x45\x32\x22\x2c\x0a\x22\x25\x40\x09\x63\x20\x23\ -\x46\x36\x46\x35\x46\x36\x22\x2c\x0a\x22\x26\x40\x09\x63\x20\x23\ -\x38\x31\x37\x42\x39\x46\x22\x2c\x0a\x22\x2a\x40\x09\x63\x20\x23\ -\x32\x41\x31\x44\x35\x45\x22\x2c\x0a\x22\x3d\x40\x09\x63\x20\x23\ -\x36\x45\x36\x34\x38\x43\x22\x2c\x0a\x22\x2d\x40\x09\x63\x20\x23\ -\x41\x38\x41\x32\x42\x38\x22\x2c\x0a\x22\x3b\x40\x09\x63\x20\x23\ -\x38\x34\x39\x33\x41\x43\x22\x2c\x0a\x22\x3e\x40\x09\x63\x20\x23\ -\x31\x46\x35\x37\x38\x33\x22\x2c\x0a\x22\x2c\x40\x09\x63\x20\x23\ -\x37\x30\x38\x44\x41\x39\x22\x2c\x0a\x22\x27\x40\x09\x63\x20\x23\ -\x38\x31\x37\x39\x39\x42\x22\x2c\x0a\x22\x29\x40\x09\x63\x20\x23\ -\x33\x42\x32\x46\x36\x37\x22\x2c\x0a\x22\x21\x40\x09\x63\x20\x23\ -\x34\x41\x34\x31\x37\x36\x22\x2c\x0a\x22\x7e\x40\x09\x63\x20\x23\ -\x44\x43\x44\x46\x45\x35\x22\x2c\x0a\x22\x7b\x40\x09\x63\x20\x23\ -\x41\x37\x42\x43\x43\x42\x22\x2c\x0a\x22\x5d\x40\x09\x63\x20\x23\ -\x44\x33\x44\x45\x45\x33\x22\x2c\x0a\x22\x5e\x40\x09\x63\x20\x23\ -\x43\x33\x44\x32\x44\x42\x22\x2c\x0a\x22\x2f\x40\x09\x63\x20\x23\ -\x38\x33\x41\x33\x42\x38\x22\x2c\x0a\x22\x28\x40\x09\x63\x20\x23\ -\x35\x31\x34\x34\x37\x34\x22\x2c\x0a\x22\x5f\x40\x09\x63\x20\x23\ -\x33\x36\x32\x38\x36\x31\x22\x2c\x0a\x22\x3a\x40\x09\x63\x20\x23\ -\x34\x35\x33\x38\x36\x45\x22\x2c\x0a\x22\x3c\x40\x09\x63\x20\x23\ -\x44\x46\x44\x44\x45\x35\x22\x2c\x0a\x22\x5b\x40\x09\x63\x20\x23\ -\x46\x45\x46\x46\x46\x45\x22\x2c\x0a\x22\x7d\x40\x09\x63\x20\x23\ -\x46\x36\x46\x35\x46\x38\x22\x2c\x0a\x22\x7c\x40\x09\x63\x20\x23\ -\x33\x44\x33\x33\x36\x43\x22\x2c\x0a\x22\x31\x40\x09\x63\x20\x23\ -\x32\x36\x31\x41\x35\x42\x22\x2c\x0a\x22\x32\x40\x09\x63\x20\x23\ -\x33\x35\x32\x38\x36\x30\x22\x2c\x0a\x22\x33\x40\x09\x63\x20\x23\ -\x33\x33\x32\x39\x36\x31\x22\x2c\x0a\x22\x34\x40\x09\x63\x20\x23\ -\x38\x34\x38\x30\x41\x32\x22\x2c\x0a\x22\x35\x40\x09\x63\x20\x23\ -\x43\x44\x43\x43\x44\x38\x22\x2c\x0a\x22\x36\x40\x09\x63\x20\x23\ -\x45\x42\x45\x41\x45\x45\x22\x2c\x0a\x22\x37\x40\x09\x63\x20\x23\ -\x45\x44\x45\x43\x46\x30\x22\x2c\x0a\x22\x38\x40\x09\x63\x20\x23\ -\x45\x41\x45\x38\x45\x44\x22\x2c\x0a\x22\x39\x40\x09\x63\x20\x23\ -\x44\x44\x44\x42\x45\x32\x22\x2c\x0a\x22\x30\x40\x09\x63\x20\x23\ -\x44\x46\x44\x44\x45\x34\x22\x2c\x0a\x22\x61\x40\x09\x63\x20\x23\ -\x37\x45\x37\x34\x39\x38\x22\x2c\x0a\x22\x62\x40\x09\x63\x20\x23\ -\x34\x38\x33\x43\x37\x30\x22\x2c\x0a\x22\x63\x40\x09\x63\x20\x23\ -\x37\x34\x36\x43\x39\x33\x22\x2c\x0a\x22\x64\x40\x09\x63\x20\x23\ -\x45\x32\x45\x30\x45\x36\x22\x2c\x0a\x22\x65\x40\x09\x63\x20\x23\ -\x44\x38\x45\x32\x45\x38\x22\x2c\x0a\x22\x66\x40\x09\x63\x20\x23\ -\x34\x44\x37\x45\x41\x30\x22\x2c\x0a\x22\x67\x40\x09\x63\x20\x23\ -\x36\x38\x39\x30\x41\x43\x22\x2c\x0a\x22\x68\x40\x09\x63\x20\x23\ -\x46\x33\x46\x36\x46\x36\x22\x2c\x0a\x22\x69\x40\x09\x63\x20\x23\ -\x46\x42\x46\x42\x46\x42\x22\x2c\x0a\x22\x6a\x40\x09\x63\x20\x23\ -\x41\x45\x41\x38\x42\x44\x22\x2c\x0a\x22\x6b\x40\x09\x63\x20\x23\ -\x33\x45\x33\x32\x36\x37\x22\x2c\x0a\x22\x6c\x40\x09\x63\x20\x23\ -\x32\x43\x32\x30\x36\x31\x22\x2c\x0a\x22\x6d\x40\x09\x63\x20\x23\ -\x43\x33\x43\x30\x44\x30\x22\x2c\x0a\x22\x6e\x40\x09\x63\x20\x23\ -\x38\x46\x41\x44\x43\x30\x22\x2c\x0a\x22\x6f\x40\x09\x63\x20\x23\ -\x37\x32\x39\x38\x42\x31\x22\x2c\x0a\x22\x70\x40\x09\x63\x20\x23\ -\x36\x38\x38\x46\x41\x39\x22\x2c\x0a\x22\x71\x40\x09\x63\x20\x23\ -\x37\x46\x39\x46\x42\x36\x22\x2c\x0a\x22\x72\x40\x09\x63\x20\x23\ -\x42\x46\x42\x43\x43\x42\x22\x2c\x0a\x22\x73\x40\x09\x63\x20\x23\ -\x34\x30\x33\x32\x36\x37\x22\x2c\x0a\x22\x74\x40\x09\x63\x20\x23\ -\x34\x34\x33\x37\x36\x44\x22\x2c\x0a\x22\x75\x40\x09\x63\x20\x23\ -\x45\x30\x44\x44\x45\x35\x22\x2c\x0a\x22\x76\x40\x09\x63\x20\x23\ -\x46\x46\x46\x46\x46\x46\x22\x2c\x0a\x22\x77\x40\x09\x63\x20\x23\ -\x45\x41\x45\x39\x45\x44\x22\x2c\x0a\x22\x78\x40\x09\x63\x20\x23\ -\x41\x31\x39\x43\x42\x35\x22\x2c\x0a\x22\x79\x40\x09\x63\x20\x23\ -\x41\x38\x41\x33\x42\x42\x22\x2c\x0a\x22\x7a\x40\x09\x63\x20\x23\ 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-\x38\x37\x41\x35\x42\x41\x22\x2c\x0a\x22\x31\x23\x09\x63\x20\x23\ -\x42\x44\x43\x44\x44\x38\x22\x2c\x0a\x22\x32\x23\x09\x63\x20\x23\ -\x38\x31\x37\x41\x39\x45\x22\x2c\x0a\x22\x33\x23\x09\x63\x20\x23\ -\x33\x44\x33\x31\x36\x42\x22\x2c\x0a\x22\x34\x23\x09\x63\x20\x23\ -\x44\x45\x44\x43\x45\x35\x22\x2c\x0a\x22\x35\x23\x09\x63\x20\x23\ -\x43\x46\x43\x44\x44\x41\x22\x2c\x0a\x22\x36\x23\x09\x63\x20\x23\ -\x32\x44\x32\x33\x36\x32\x22\x2c\x0a\x22\x37\x23\x09\x63\x20\x23\ -\x37\x38\x37\x31\x39\x38\x22\x2c\x0a\x22\x38\x23\x09\x63\x20\x23\ -\x46\x42\x46\x41\x46\x41\x22\x2c\x0a\x22\x39\x23\x09\x63\x20\x23\ -\x39\x45\x39\x43\x42\x38\x22\x2c\x0a\x22\x30\x23\x09\x63\x20\x23\ -\x38\x35\x37\x45\x39\x46\x22\x2c\x0a\x22\x61\x23\x09\x63\x20\x23\ -\x46\x36\x46\x36\x46\x37\x22\x2c\x0a\x22\x62\x23\x09\x63\x20\x23\ -\x38\x45\x38\x37\x41\x35\x22\x2c\x0a\x22\x63\x23\x09\x63\x20\x23\ -\x35\x35\x34\x41\x37\x43\x22\x2c\x0a\x22\x64\x23\x09\x63\x20\x23\ -\x46\x38\x46\x37\x46\x38\x22\x2c\x0a\x22\x65\x23\x09\x63\x20\x23\ -\x37\x33\x36\x39\x38\x46\x22\x2c\x0a\x22\x66\x23\x09\x63\x20\x23\ -\x39\x31\x41\x42\x42\x46\x22\x2c\x0a\x22\x67\x23\x09\x63\x20\x23\ -\x32\x33\x35\x45\x38\x39\x22\x2c\x0a\x22\x68\x23\x09\x63\x20\x23\ -\x38\x46\x41\x38\x42\x44\x22\x2c\x0a\x22\x69\x23\x09\x63\x20\x23\ -\x41\x33\x39\x43\x42\x35\x22\x2c\x0a\x22\x6a\x23\x09\x63\x20\x23\ -\x37\x43\x37\x32\x39\x35\x22\x2c\x0a\x22\x6b\x23\x09\x63\x20\x23\ -\x34\x46\x34\x34\x37\x36\x22\x2c\x0a\x22\x6c\x23\x09\x63\x20\x23\ -\x32\x43\x32\x30\x35\x46\x22\x2c\x0a\x22\x6d\x23\x09\x63\x20\x23\ -\x35\x45\x35\x35\x38\x34\x22\x2c\x0a\x22\x6e\x23\x09\x63\x20\x23\ -\x45\x31\x45\x35\x45\x39\x22\x2c\x0a\x22\x6f\x23\x09\x63\x20\x23\ -\x39\x38\x42\x31\x43\x34\x22\x2c\x0a\x22\x70\x23\x09\x63\x20\x23\ -\x44\x43\x45\x34\x45\x39\x22\x2c\x0a\x22\x71\x23\x09\x63\x20\x23\ -\x44\x46\x45\x36\x45\x42\x22\x2c\x0a\x22\x72\x23\x09\x63\x20\x23\ -\x46\x38\x46\x39\x46\x41\x22\x2c\x0a\x22\x73\x23\x09\x63\x20\x23\ -\x36\x45\x36\x36\x39\x30\x22\x2c\x0a\x22\x74\x23\x09\x63\x20\x23\ -\x33\x38\x32\x41\x36\x33\x22\x2c\x0a\x22\x75\x23\x09\x63\x20\x23\ -\x33\x46\x33\x34\x36\x43\x22\x2c\x0a\x22\x76\x23\x09\x63\x20\x23\ -\x44\x43\x44\x42\x45\x34\x22\x2c\x0a\x22\x77\x23\x09\x63\x20\x23\ -\x44\x32\x43\x46\x44\x43\x22\x2c\x0a\x22\x78\x23\x09\x63\x20\x23\ -\x33\x31\x32\x36\x36\x34\x22\x2c\x0a\x22\x79\x23\x09\x63\x20\x23\ -\x34\x37\x33\x44\x37\x34\x22\x2c\x0a\x22\x7a\x23\x09\x63\x20\x23\ -\x45\x39\x45\x39\x45\x44\x22\x2c\x0a\x22\x41\x23\x09\x63\x20\x23\ -\x43\x32\x43\x30\x44\x30\x22\x2c\x0a\x22\x42\x23\x09\x63\x20\x23\ -\x32\x44\x32\x31\x36\x31\x22\x2c\x0a\x22\x43\x23\x09\x63\x20\x23\ -\x33\x43\x32\x46\x36\x36\x22\x2c\x0a\x22\x44\x23\x09\x63\x20\x23\ -\x42\x42\x42\x36\x43\x37\x22\x2c\x0a\x22\x45\x23\x09\x63\x20\x23\ -\x46\x43\x46\x42\x46\x43\x22\x2c\x0a\x22\x46\x23\x09\x63\x20\x23\ 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-\x46\x30\x46\x30\x46\x32\x22\x2c\x0a\x22\x55\x23\x09\x63\x20\x23\ -\x41\x46\x43\x34\x44\x30\x22\x2c\x0a\x22\x56\x23\x09\x63\x20\x23\ -\x43\x32\x44\x32\x44\x42\x22\x2c\x0a\x22\x57\x23\x09\x63\x20\x23\ -\x38\x36\x41\x35\x42\x41\x22\x2c\x0a\x22\x58\x23\x09\x63\x20\x23\ -\x38\x45\x41\x42\x42\x46\x22\x2c\x0a\x22\x59\x23\x09\x63\x20\x23\ -\x36\x35\x35\x43\x38\x41\x22\x2c\x0a\x22\x5a\x23\x09\x63\x20\x23\ -\x34\x37\x33\x41\x37\x30\x22\x2c\x0a\x22\x60\x23\x09\x63\x20\x23\ -\x44\x44\x44\x42\x45\x34\x22\x2c\x0a\x22\x20\x24\x09\x63\x20\x23\ -\x44\x33\x44\x30\x44\x43\x22\x2c\x0a\x22\x2e\x24\x09\x63\x20\x23\ -\x33\x34\x32\x38\x36\x35\x22\x2c\x0a\x22\x2b\x24\x09\x63\x20\x23\ -\x33\x44\x33\x37\x37\x30\x22\x2c\x0a\x22\x40\x24\x09\x63\x20\x23\ -\x45\x32\x45\x33\x45\x41\x22\x2c\x0a\x22\x23\x24\x09\x63\x20\x23\ -\x43\x38\x43\x35\x44\x33\x22\x2c\x0a\x22\x24\x24\x09\x63\x20\x23\ -\x32\x41\x31\x45\x35\x45\x22\x2c\x0a\x22\x25\x24\x09\x63\x20\x23\ 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-\x44\x44\x44\x42\x45\x35\x22\x2c\x0a\x22\x60\x24\x09\x63\x20\x23\ -\x35\x30\x34\x35\x37\x39\x22\x2c\x0a\x22\x20\x25\x09\x63\x20\x23\ -\x33\x43\x33\x32\x36\x44\x22\x2c\x0a\x22\x2e\x25\x09\x63\x20\x23\ -\x37\x41\x37\x36\x39\x44\x22\x2c\x0a\x22\x2b\x25\x09\x63\x20\x23\ -\x45\x34\x45\x37\x45\x43\x22\x2c\x0a\x22\x40\x25\x09\x63\x20\x23\ -\x44\x41\x44\x38\x45\x31\x22\x2c\x0a\x22\x23\x25\x09\x63\x20\x23\ -\x34\x43\x34\x31\x37\x37\x22\x2c\x0a\x22\x24\x25\x09\x63\x20\x23\ -\x38\x38\x38\x31\x41\x34\x22\x2c\x0a\x22\x25\x25\x09\x63\x20\x23\ -\x45\x44\x45\x43\x45\x46\x22\x2c\x0a\x22\x26\x25\x09\x63\x20\x23\ -\x44\x34\x44\x32\x44\x44\x22\x2c\x0a\x22\x2a\x25\x09\x63\x20\x23\ -\x43\x42\x43\x38\x44\x36\x22\x2c\x0a\x22\x3d\x25\x09\x63\x20\x23\ -\x44\x30\x43\x44\x44\x39\x22\x2c\x0a\x22\x2d\x25\x09\x63\x20\x23\ -\x44\x37\x44\x35\x44\x46\x22\x2c\x0a\x22\x3b\x25\x09\x63\x20\x23\ -\x43\x46\x44\x36\x44\x46\x22\x2c\x0a\x22\x3e\x25\x09\x63\x20\x23\ 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-\x36\x30\x38\x41\x41\x37\x22\x2c\x0a\x22\x7d\x25\x09\x63\x20\x23\ -\x37\x41\x39\x44\x42\x35\x22\x2c\x0a\x22\x7c\x25\x09\x63\x20\x23\ -\x41\x37\x42\x45\x43\x43\x22\x2c\x0a\x22\x31\x25\x09\x63\x20\x23\ -\x41\x44\x41\x38\x42\x45\x22\x2c\x0a\x22\x32\x25\x09\x63\x20\x23\ -\x32\x38\x31\x43\x35\x44\x22\x2c\x0a\x22\x33\x25\x09\x63\x20\x23\ -\x32\x45\x32\x31\x35\x46\x22\x2c\x0a\x22\x34\x25\x09\x63\x20\x23\ -\x33\x33\x32\x35\x36\x31\x22\x2c\x0a\x22\x35\x25\x09\x63\x20\x23\ -\x34\x33\x33\x37\x36\x45\x22\x2c\x0a\x22\x36\x25\x09\x63\x20\x23\ -\x45\x31\x44\x46\x45\x38\x22\x2c\x0a\x22\x37\x25\x09\x63\x20\x23\ -\x45\x30\x44\x46\x45\x38\x22\x2c\x0a\x22\x38\x25\x09\x63\x20\x23\ -\x46\x32\x46\x31\x46\x33\x22\x2c\x0a\x22\x39\x25\x09\x63\x20\x23\ -\x37\x46\x37\x38\x39\x45\x22\x2c\x0a\x22\x30\x25\x09\x63\x20\x23\ -\x35\x33\x34\x39\x37\x44\x22\x2c\x0a\x22\x61\x25\x09\x63\x20\x23\ -\x46\x30\x45\x46\x46\x33\x22\x2c\x0a\x22\x62\x25\x09\x63\x20\x23\ -\x45\x38\x45\x36\x45\x43\x22\x2c\x0a\x22\x63\x25\x09\x63\x20\x23\ -\x36\x35\x35\x44\x38\x39\x22\x2c\x0a\x22\x64\x25\x09\x63\x20\x23\ -\x32\x46\x32\x34\x36\x31\x22\x2c\x0a\x22\x65\x25\x09\x63\x20\x23\ -\x33\x33\x32\x39\x36\x34\x22\x2c\x0a\x22\x66\x25\x09\x63\x20\x23\ -\x33\x34\x33\x32\x36\x42\x22\x2c\x0a\x22\x67\x25\x09\x63\x20\x23\ -\x32\x43\x35\x32\x38\x32\x22\x2c\x0a\x22\x68\x25\x09\x63\x20\x23\ -\x34\x35\x37\x38\x39\x43\x22\x2c\x0a\x22\x69\x25\x09\x63\x20\x23\ -\x42\x44\x43\x43\x44\x37\x22\x2c\x0a\x22\x6a\x25\x09\x63\x20\x23\ -\x36\x42\x36\x32\x38\x44\x22\x2c\x0a\x22\x6b\x25\x09\x63\x20\x23\ -\x36\x43\x36\x34\x38\x46\x22\x2c\x0a\x22\x6c\x25\x09\x63\x20\x23\ -\x43\x43\x43\x39\x44\x37\x22\x2c\x0a\x22\x6d\x25\x09\x63\x20\x23\ -\x45\x35\x45\x34\x45\x41\x22\x2c\x0a\x22\x6e\x25\x09\x63\x20\x23\ -\x37\x42\x37\x32\x39\x36\x22\x2c\x0a\x22\x6f\x25\x09\x63\x20\x23\ -\x33\x33\x32\x35\x35\x46\x22\x2c\x0a\x22\x70\x25\x09\x63\x20\x23\ 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-\x33\x37\x32\x44\x36\x38\x22\x2c\x0a\x22\x5d\x26\x09\x63\x20\x23\ -\x44\x37\x44\x35\x45\x30\x22\x2c\x0a\x22\x5e\x26\x09\x63\x20\x23\ -\x44\x30\x44\x43\x45\x33\x22\x2c\x0a\x22\x2f\x26\x09\x63\x20\x23\ -\x36\x46\x39\x35\x41\x46\x22\x2c\x0a\x22\x28\x26\x09\x63\x20\x23\ -\x39\x34\x42\x30\x43\x33\x22\x2c\x0a\x22\x5f\x26\x09\x63\x20\x23\ -\x39\x38\x42\x33\x43\x34\x22\x2c\x0a\x22\x3a\x26\x09\x63\x20\x23\ -\x38\x38\x38\x31\x41\x32\x22\x2c\x0a\x22\x3c\x26\x09\x63\x20\x23\ -\x33\x30\x32\x33\x35\x45\x22\x2c\x0a\x22\x5b\x26\x09\x63\x20\x23\ -\x32\x32\x31\x36\x35\x42\x22\x2c\x0a\x22\x7d\x26\x09\x63\x20\x23\ -\x32\x41\x31\x44\x35\x44\x22\x2c\x0a\x22\x7c\x26\x09\x63\x20\x23\ -\x33\x44\x33\x42\x36\x45\x22\x2c\x0a\x22\x31\x26\x09\x63\x20\x23\ -\x32\x44\x35\x34\x38\x31\x22\x2c\x0a\x22\x32\x26\x09\x63\x20\x23\ -\x30\x46\x34\x31\x37\x35\x22\x2c\x0a\x22\x33\x26\x09\x63\x20\x23\ -\x32\x34\x32\x44\x36\x38\x22\x2c\x0a\x22\x34\x26\x09\x63\x20\x23\ -\x33\x38\x32\x43\x36\x35\x22\x2c\x0a\x22\x35\x26\x09\x63\x20\x23\ -\x32\x36\x31\x41\x35\x41\x22\x2c\x0a\x22\x36\x26\x09\x63\x20\x23\ -\x33\x36\x32\x39\x36\x32\x22\x2c\x0a\x22\x37\x26\x09\x63\x20\x23\ -\x45\x34\x45\x41\x45\x45\x22\x2c\x0a\x22\x38\x26\x09\x63\x20\x23\ -\x42\x44\x43\x45\x44\x38\x22\x2c\x0a\x22\x39\x26\x09\x63\x20\x23\ -\x42\x46\x42\x43\x43\x44\x22\x2c\x0a\x22\x30\x26\x09\x63\x20\x23\ -\x32\x46\x32\x34\x36\x32\x22\x2c\x0a\x22\x61\x26\x09\x63\x20\x23\ -\x32\x43\x31\x45\x35\x45\x22\x2c\x0a\x22\x62\x26\x09\x63\x20\x23\ -\x32\x42\x32\x43\x36\x33\x22\x2c\x0a\x22\x63\x26\x09\x63\x20\x23\ -\x31\x39\x34\x30\x37\x33\x22\x2c\x0a\x22\x64\x26\x09\x63\x20\x23\ -\x31\x34\x34\x31\x37\x36\x22\x2c\x0a\x22\x65\x26\x09\x63\x20\x23\ -\x32\x36\x32\x44\x36\x35\x22\x2c\x0a\x22\x66\x26\x09\x63\x20\x23\ -\x41\x34\x39\x46\x42\x38\x22\x2c\x0a\x22\x67\x26\x09\x63\x20\x23\ -\x46\x43\x46\x44\x46\x43\x22\x2c\x0a\x22\x68\x26\x09\x63\x20\x23\ -\x45\x35\x45\x42\x45\x46\x22\x2c\x0a\x22\x69\x26\x09\x63\x20\x23\ -\x36\x41\x36\x32\x38\x44\x22\x2c\x0a\x22\x6a\x26\x09\x63\x20\x23\ -\x32\x35\x32\x41\x36\x35\x22\x2c\x0a\x22\x6b\x26\x09\x63\x20\x23\ -\x31\x34\x34\x30\x37\x33\x22\x2c\x0a\x22\x6c\x26\x09\x63\x20\x23\ -\x32\x32\x32\x37\x36\x34\x22\x2c\x0a\x22\x6d\x26\x09\x63\x20\x23\ -\x32\x45\x32\x30\x35\x43\x22\x2c\x0a\x22\x6e\x26\x09\x63\x20\x23\ -\x35\x32\x34\x39\x37\x44\x22\x2c\x0a\x22\x6f\x26\x09\x63\x20\x23\ -\x45\x34\x45\x42\x45\x45\x22\x2c\x0a\x22\x70\x26\x09\x63\x20\x23\ -\x39\x38\x42\x32\x43\x33\x22\x2c\x0a\x22\x71\x26\x09\x63\x20\x23\ -\x46\x30\x46\x34\x46\x35\x22\x2c\x0a\x22\x72\x26\x09\x63\x20\x23\ -\x42\x34\x42\x31\x43\x35\x22\x2c\x0a\x22\x73\x26\x09\x63\x20\x23\ -\x32\x43\x32\x30\x36\x30\x22\x2c\x0a\x22\x74\x26\x09\x63\x20\x23\ -\x32\x38\x31\x46\x35\x45\x22\x2c\x0a\x22\x75\x26\x09\x63\x20\x23\ -\x32\x34\x32\x32\x36\x30\x22\x2c\x0a\x22\x76\x26\x09\x63\x20\x23\ -\x32\x41\x33\x30\x36\x37\x22\x2c\x0a\x22\x77\x26\x09\x63\x20\x23\ -\x31\x43\x33\x31\x36\x41\x22\x2c\x0a\x22\x78\x26\x09\x63\x20\x23\ -\x31\x30\x33\x46\x37\x34\x22\x2c\x0a\x22\x79\x26\x09\x63\x20\x23\ -\x31\x39\x33\x46\x37\x34\x22\x2c\x0a\x22\x7a\x26\x09\x63\x20\x23\ -\x32\x44\x32\x45\x36\x37\x22\x2c\x0a\x22\x41\x26\x09\x63\x20\x23\ -\x33\x37\x32\x39\x36\x31\x22\x2c\x0a\x22\x42\x26\x09\x63\x20\x23\ -\x32\x42\x31\x45\x35\x43\x22\x2c\x0a\x22\x43\x26\x09\x63\x20\x23\ -\x39\x44\x39\x38\x42\x34\x22\x2c\x0a\x22\x44\x26\x09\x63\x20\x23\ -\x43\x39\x44\x37\x44\x46\x22\x2c\x0a\x22\x45\x26\x09\x63\x20\x23\ -\x36\x35\x38\x44\x41\x39\x22\x2c\x0a\x22\x46\x26\x09\x63\x20\x23\ -\x39\x30\x41\x44\x43\x32\x22\x2c\x0a\x22\x47\x26\x09\x63\x20\x23\ -\x37\x36\x36\x45\x39\x36\x22\x2c\x0a\x22\x48\x26\x09\x63\x20\x23\ -\x32\x32\x31\x37\x35\x41\x22\x2c\x0a\x22\x49\x26\x09\x63\x20\x23\ -\x31\x39\x32\x37\x36\x34\x22\x2c\x0a\x22\x4a\x26\x09\x63\x20\x23\ -\x31\x32\x33\x37\x36\x46\x22\x2c\x0a\x22\x4b\x26\x09\x63\x20\x23\ -\x31\x30\x34\x32\x37\x35\x22\x2c\x0a\x22\x4c\x26\x09\x63\x20\x23\ -\x30\x42\x34\x35\x37\x38\x22\x2c\x0a\x22\x4d\x26\x09\x63\x20\x23\ -\x30\x43\x34\x42\x37\x43\x22\x2c\x0a\x22\x4e\x26\x09\x63\x20\x23\ -\x30\x39\x34\x43\x37\x44\x22\x2c\x0a\x22\x4f\x26\x09\x63\x20\x23\ -\x31\x42\x33\x44\x37\x32\x22\x2c\x0a\x22\x50\x26\x09\x63\x20\x23\ -\x32\x44\x32\x38\x36\x33\x22\x2c\x0a\x22\x51\x26\x09\x63\x20\x23\ -\x33\x31\x32\x33\x36\x30\x22\x2c\x0a\x22\x52\x26\x09\x63\x20\x23\ -\x36\x34\x35\x43\x38\x41\x22\x2c\x0a\x22\x53\x26\x09\x63\x20\x23\ -\x44\x35\x44\x46\x45\x36\x22\x2c\x0a\x22\x54\x26\x09\x63\x20\x23\ -\x41\x45\x43\x32\x43\x46\x22\x2c\x0a\x22\x55\x26\x09\x63\x20\x23\ -\x42\x36\x43\x38\x44\x35\x22\x2c\x0a\x22\x56\x26\x09\x63\x20\x23\ -\x41\x38\x42\x45\x43\x45\x22\x2c\x0a\x22\x57\x26\x09\x63\x20\x23\ -\x39\x43\x41\x36\x42\x44\x22\x2c\x0a\x22\x58\x26\x09\x63\x20\x23\ -\x32\x34\x32\x36\x36\x35\x22\x2c\x0a\x22\x59\x26\x09\x63\x20\x23\ -\x32\x30\x31\x35\x35\x39\x22\x2c\x0a\x22\x5a\x26\x09\x63\x20\x23\ -\x31\x42\x32\x38\x36\x36\x22\x2c\x0a\x22\x60\x26\x09\x63\x20\x23\ -\x30\x45\x34\x35\x37\x41\x22\x2c\x0a\x22\x20\x2a\x09\x63\x20\x23\ -\x30\x38\x34\x42\x37\x45\x22\x2c\x0a\x22\x2e\x2a\x09\x63\x20\x23\ -\x30\x38\x34\x42\x37\x44\x22\x2c\x0a\x22\x2b\x2a\x09\x63\x20\x23\ -\x30\x38\x34\x41\x37\x45\x22\x2c\x0a\x22\x40\x2a\x09\x63\x20\x23\ -\x30\x46\x34\x36\x37\x38\x22\x2c\x0a\x22\x23\x2a\x09\x63\x20\x23\ -\x33\x31\x33\x30\x36\x38\x22\x2c\x0a\x22\x24\x2a\x09\x63\x20\x23\ -\x33\x38\x32\x39\x36\x31\x22\x2c\x0a\x22\x25\x2a\x09\x63\x20\x23\ -\x33\x38\x32\x39\x36\x32\x22\x2c\x0a\x22\x26\x2a\x09\x63\x20\x23\ -\x32\x37\x31\x41\x35\x44\x22\x2c\x0a\x22\x2a\x2a\x09\x63\x20\x23\ -\x33\x43\x33\x32\x36\x43\x22\x2c\x0a\x22\x3d\x2a\x09\x63\x20\x23\ -\x42\x42\x42\x38\x43\x41\x22\x2c\x0a\x22\x2d\x2a\x09\x63\x20\x23\ -\x38\x39\x41\x36\x42\x42\x22\x2c\x0a\x22\x3b\x2a\x09\x63\x20\x23\ -\x43\x39\x44\x38\x45\x30\x22\x2c\x0a\x22\x3e\x2a\x09\x63\x20\x23\ -\x46\x42\x46\x43\x46\x43\x22\x2c\x0a\x22\x2c\x2a\x09\x63\x20\x23\ -\x36\x44\x39\x34\x42\x30\x22\x2c\x0a\x22\x27\x2a\x09\x63\x20\x23\ -\x33\x38\x35\x34\x38\x33\x22\x2c\x0a\x22\x29\x2a\x09\x63\x20\x23\ -\x33\x33\x32\x39\x36\x37\x22\x2c\x0a\x22\x21\x2a\x09\x63\x20\x23\ -\x31\x46\x31\x33\x35\x38\x22\x2c\x0a\x22\x7e\x2a\x09\x63\x20\x23\ -\x32\x36\x31\x39\x35\x43\x22\x2c\x0a\x22\x7b\x2a\x09\x63\x20\x23\ -\x31\x43\x33\x39\x37\x30\x22\x2c\x0a\x22\x5d\x2a\x09\x63\x20\x23\ -\x30\x38\x34\x41\x37\x43\x22\x2c\x0a\x22\x5e\x2a\x09\x63\x20\x23\ -\x30\x41\x34\x44\x37\x46\x22\x2c\x0a\x22\x2f\x2a\x09\x63\x20\x23\ -\x31\x42\x33\x45\x37\x32\x22\x2c\x0a\x22\x28\x2a\x09\x63\x20\x23\ -\x33\x33\x32\x34\x36\x30\x22\x2c\x0a\x22\x5f\x2a\x09\x63\x20\x23\ -\x33\x32\x32\x34\x36\x31\x22\x2c\x0a\x22\x3a\x2a\x09\x63\x20\x23\ -\x33\x31\x32\x34\x36\x30\x22\x2c\x0a\x22\x3c\x2a\x09\x63\x20\x23\ -\x32\x31\x31\x36\x35\x39\x22\x2c\x0a\x22\x5b\x2a\x09\x63\x20\x23\ -\x39\x41\x39\x35\x42\x31\x22\x2c\x0a\x22\x7d\x2a\x09\x63\x20\x23\ -\x43\x35\x44\x34\x44\x45\x22\x2c\x0a\x22\x7c\x2a\x09\x63\x20\x23\ -\x37\x45\x39\x45\x42\x36\x22\x2c\x0a\x22\x31\x2a\x09\x63\x20\x23\ -\x39\x36\x42\x32\x43\x34\x22\x2c\x0a\x22\x32\x2a\x09\x63\x20\x23\ -\x41\x39\x43\x30\x43\x46\x22\x2c\x0a\x22\x33\x2a\x09\x63\x20\x23\ -\x33\x34\x36\x42\x39\x32\x22\x2c\x0a\x22\x34\x2a\x09\x63\x20\x23\ -\x39\x44\x42\x36\x43\x38\x22\x2c\x0a\x22\x35\x2a\x09\x63\x20\x23\ -\x39\x43\x39\x37\x42\x33\x22\x2c\x0a\x22\x36\x2a\x09\x63\x20\x23\ -\x32\x39\x31\x45\x35\x44\x22\x2c\x0a\x22\x37\x2a\x09\x63\x20\x23\ -\x31\x46\x31\x36\x35\x41\x22\x2c\x0a\x22\x38\x2a\x09\x63\x20\x23\ -\x31\x39\x32\x42\x36\x37\x22\x2c\x0a\x22\x39\x2a\x09\x63\x20\x23\ -\x31\x30\x34\x33\x37\x36\x22\x2c\x0a\x22\x30\x2a\x09\x63\x20\x23\ -\x30\x44\x34\x32\x37\x37\x22\x2c\x0a\x22\x61\x2a\x09\x63\x20\x23\ -\x30\x41\x34\x42\x37\x44\x22\x2c\x0a\x22\x62\x2a\x09\x63\x20\x23\ -\x32\x36\x33\x33\x36\x41\x22\x2c\x0a\x22\x63\x2a\x09\x63\x20\x23\ -\x33\x35\x32\x36\x36\x30\x22\x2c\x0a\x22\x64\x2a\x09\x63\x20\x23\ -\x33\x30\x32\x31\x35\x45\x22\x2c\x0a\x22\x65\x2a\x09\x63\x20\x23\ -\x38\x46\x38\x38\x41\x41\x22\x2c\x0a\x22\x66\x2a\x09\x63\x20\x23\ -\x46\x45\x46\x44\x46\x44\x22\x2c\x0a\x22\x67\x2a\x09\x63\x20\x23\ -\x41\x35\x42\x42\x43\x41\x22\x2c\x0a\x22\x68\x2a\x09\x63\x20\x23\ -\x42\x45\x43\x46\x44\x39\x22\x2c\x0a\x22\x69\x2a\x09\x63\x20\x23\ -\x45\x39\x45\x46\x46\x30\x22\x2c\x0a\x22\x6a\x2a\x09\x63\x20\x23\ -\x41\x32\x42\x42\x43\x41\x22\x2c\x0a\x22\x6b\x2a\x09\x63\x20\x23\ -\x32\x41\x36\x34\x38\x44\x22\x2c\x0a\x22\x6c\x2a\x09\x63\x20\x23\ -\x43\x45\x44\x41\x45\x34\x22\x2c\x0a\x22\x6d\x2a\x09\x63\x20\x23\ -\x46\x44\x46\x44\x46\x43\x22\x2c\x0a\x22\x6e\x2a\x09\x63\x20\x23\ -\x39\x39\x39\x34\x42\x30\x22\x2c\x0a\x22\x6f\x2a\x09\x63\x20\x23\ -\x33\x32\x32\x36\x36\x35\x22\x2c\x0a\x22\x70\x2a\x09\x63\x20\x23\ -\x31\x42\x32\x32\x36\x31\x22\x2c\x0a\x22\x71\x2a\x09\x63\x20\x23\ -\x31\x30\x33\x36\x36\x46\x22\x2c\x0a\x22\x72\x2a\x09\x63\x20\x23\ -\x30\x43\x34\x35\x37\x38\x22\x2c\x0a\x22\x73\x2a\x09\x63\x20\x23\ -\x31\x39\x33\x35\x36\x45\x22\x2c\x0a\x22\x74\x2a\x09\x63\x20\x23\ -\x32\x32\x32\x30\x35\x46\x22\x2c\x0a\x22\x75\x2a\x09\x63\x20\x23\ -\x31\x36\x33\x35\x36\x45\x22\x2c\x0a\x22\x76\x2a\x09\x63\x20\x23\ -\x31\x30\x34\x34\x37\x37\x22\x2c\x0a\x22\x77\x2a\x09\x63\x20\x23\ -\x32\x44\x32\x37\x36\x32\x22\x2c\x0a\x22\x78\x2a\x09\x63\x20\x23\ -\x33\x31\x32\x32\x35\x46\x22\x2c\x0a\x22\x79\x2a\x09\x63\x20\x23\ -\x38\x42\x38\x35\x41\x36\x22\x2c\x0a\x22\x7a\x2a\x09\x63\x20\x23\ -\x41\x46\x43\x33\x44\x30\x22\x2c\x0a\x22\x41\x2a\x09\x63\x20\x23\ -\x39\x37\x42\x32\x43\x34\x22\x2c\x0a\x22\x42\x2a\x09\x63\x20\x23\ -\x39\x36\x42\x31\x43\x33\x22\x2c\x0a\x22\x43\x2a\x09\x63\x20\x23\ -\x39\x44\x42\x37\x43\x38\x22\x2c\x0a\x22\x44\x2a\x09\x63\x20\x23\ -\x32\x39\x36\x33\x38\x42\x22\x2c\x0a\x22\x45\x2a\x09\x63\x20\x23\ -\x42\x41\x43\x44\x44\x38\x22\x2c\x0a\x22\x46\x2a\x09\x63\x20\x23\ -\x45\x42\x46\x30\x46\x32\x22\x2c\x0a\x22\x47\x2a\x09\x63\x20\x23\ -\x34\x36\x36\x37\x39\x30\x22\x2c\x0a\x22\x48\x2a\x09\x63\x20\x23\ -\x31\x31\x34\x38\x37\x42\x22\x2c\x0a\x22\x49\x2a\x09\x63\x20\x23\ -\x30\x46\x33\x41\x37\x31\x22\x2c\x0a\x22\x4a\x2a\x09\x63\x20\x23\ -\x31\x41\x32\x36\x36\x35\x22\x2c\x0a\x22\x4b\x2a\x09\x63\x20\x23\ -\x32\x36\x32\x31\x35\x46\x22\x2c\x0a\x22\x4c\x2a\x09\x63\x20\x23\ -\x32\x30\x32\x41\x36\x35\x22\x2c\x0a\x22\x4d\x2a\x09\x63\x20\x23\ -\x32\x43\x32\x30\x35\x45\x22\x2c\x0a\x22\x4e\x2a\x09\x63\x20\x23\ -\x39\x36\x39\x30\x41\x45\x22\x2c\x0a\x22\x4f\x2a\x09\x63\x20\x23\ -\x45\x42\x46\x30\x46\x31\x22\x2c\x0a\x22\x50\x2a\x09\x63\x20\x23\ -\x42\x35\x43\x38\x44\x33\x22\x2c\x0a\x22\x51\x2a\x09\x63\x20\x23\ -\x41\x32\x42\x41\x43\x39\x22\x2c\x0a\x22\x52\x2a\x09\x63\x20\x23\ -\x39\x32\x41\x45\x43\x31\x22\x2c\x0a\x22\x53\x2a\x09\x63\x20\x23\ -\x46\x30\x46\x33\x46\x34\x22\x2c\x0a\x22\x54\x2a\x09\x63\x20\x23\ -\x42\x36\x43\x41\x44\x36\x22\x2c\x0a\x22\x55\x2a\x09\x63\x20\x23\ -\x33\x32\x36\x38\x39\x30\x22\x2c\x0a\x22\x56\x2a\x09\x63\x20\x23\ -\x33\x38\x36\x44\x39\x33\x22\x2c\x0a\x22\x57\x2a\x09\x63\x20\x23\ -\x32\x39\x36\x32\x38\x42\x22\x2c\x0a\x22\x58\x2a\x09\x63\x20\x23\ -\x35\x31\x37\x46\x41\x30\x22\x2c\x0a\x22\x59\x2a\x09\x63\x20\x23\ -\x38\x36\x39\x44\x42\x36\x22\x2c\x0a\x22\x5a\x2a\x09\x63\x20\x23\ -\x36\x35\x36\x32\x38\x44\x22\x2c\x0a\x22\x60\x2a\x09\x63\x20\x23\ -\x33\x30\x32\x34\x36\x30\x22\x2c\x0a\x22\x20\x3d\x09\x63\x20\x23\ -\x35\x41\x35\x31\x38\x30\x22\x2c\x0a\x22\x2e\x3d\x09\x63\x20\x23\ -\x44\x45\x45\x36\x45\x41\x22\x2c\x0a\x22\x2b\x3d\x09\x63\x20\x23\ -\x41\x46\x43\x35\x44\x32\x22\x2c\x0a\x22\x40\x3d\x09\x63\x20\x23\ -\x38\x46\x41\x41\x42\x44\x22\x2c\x0a\x22\x23\x3d\x09\x63\x20\x23\ -\x33\x44\x36\x46\x39\x33\x22\x2c\x0a\x22\x24\x3d\x09\x63\x20\x23\ -\x42\x33\x43\x37\x44\x34\x22\x2c\x0a\x22\x25\x3d\x09\x63\x20\x23\ -\x41\x31\x42\x39\x43\x41\x22\x2c\x0a\x22\x26\x3d\x09\x63\x20\x23\ -\x43\x33\x44\x33\x44\x44\x22\x2c\x0a\x22\x2a\x3d\x09\x63\x20\x23\ -\x46\x30\x46\x33\x46\x35\x22\x2c\x0a\x22\x3d\x3d\x09\x63\x20\x23\ -\x44\x45\x45\x31\x45\x36\x22\x2c\x0a\x22\x2d\x3d\x09\x63\x20\x23\ -\x39\x43\x39\x36\x42\x32\x22\x2c\x0a\x22\x3b\x3d\x09\x63\x20\x23\ -\x34\x46\x34\x35\x37\x41\x22\x2c\x0a\x22\x3e\x3d\x09\x63\x20\x23\ -\x34\x30\x33\x35\x36\x45\x22\x2c\x0a\x22\x2c\x3d\x09\x63\x20\x23\ -\x38\x45\x38\x38\x41\x38\x22\x2c\x0a\x22\x27\x3d\x09\x63\x20\x23\ -\x45\x30\x44\x46\x45\x35\x22\x2c\x0a\x22\x29\x3d\x09\x63\x20\x23\ -\x46\x41\x46\x42\x46\x41\x22\x2c\x0a\x22\x21\x3d\x09\x63\x20\x23\ -\x46\x32\x46\x36\x46\x36\x22\x2c\x0a\x22\x7e\x3d\x09\x63\x20\x23\ -\x37\x43\x39\x46\x42\x37\x22\x2c\x0a\x22\x7b\x3d\x09\x63\x20\x23\ -\x42\x42\x43\x44\x44\x37\x22\x2c\x0a\x22\x5d\x3d\x09\x63\x20\x23\ -\x43\x32\x44\x31\x44\x42\x22\x2c\x0a\x22\x5e\x3d\x09\x63\x20\x23\ -\x41\x34\x42\x43\x43\x43\x22\x2c\x0a\x22\x2f\x3d\x09\x63\x20\x23\ -\x38\x34\x41\x33\x42\x39\x22\x2c\x0a\x22\x28\x3d\x09\x63\x20\x23\ -\x43\x31\x44\x32\x44\x43\x22\x2c\x0a\x22\x5f\x3d\x09\x63\x20\x23\ -\x44\x45\x44\x44\x45\x35\x22\x2c\x0a\x22\x3a\x3d\x09\x63\x20\x23\ -\x39\x44\x39\x38\x42\x33\x22\x2c\x0a\x22\x3c\x3d\x09\x63\x20\x23\ -\x35\x44\x35\x34\x38\x33\x22\x2c\x0a\x22\x5b\x3d\x09\x63\x20\x23\ -\x33\x35\x32\x39\x36\x33\x22\x2c\x0a\x22\x7d\x3d\x09\x63\x20\x23\ -\x33\x36\x32\x37\x36\x31\x22\x2c\x0a\x22\x7c\x3d\x09\x63\x20\x23\ -\x35\x30\x34\x36\x37\x39\x22\x2c\x0a\x22\x31\x3d\x09\x63\x20\x23\ -\x39\x32\x38\x44\x41\x42\x22\x2c\x0a\x22\x32\x3d\x09\x63\x20\x23\ 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-\x43\x37\x43\x34\x44\x33\x22\x2c\x0a\x22\x67\x3d\x09\x63\x20\x23\ -\x37\x30\x36\x39\x39\x32\x22\x2c\x0a\x22\x68\x3d\x09\x63\x20\x23\ -\x35\x31\x34\x37\x37\x41\x22\x2c\x0a\x22\x69\x3d\x09\x63\x20\x23\ -\x33\x37\x32\x43\x36\x38\x22\x2c\x0a\x22\x6a\x3d\x09\x63\x20\x23\ -\x33\x34\x32\x39\x36\x37\x22\x2c\x0a\x22\x6b\x3d\x09\x63\x20\x23\ -\x33\x44\x33\x32\x36\x44\x22\x2c\x0a\x22\x6c\x3d\x09\x63\x20\x23\ -\x34\x43\x34\x32\x37\x38\x22\x2c\x0a\x22\x6d\x3d\x09\x63\x20\x23\ -\x36\x37\x35\x46\x38\x42\x22\x2c\x0a\x22\x6e\x3d\x09\x63\x20\x23\ -\x39\x34\x38\x44\x41\x45\x22\x2c\x0a\x22\x6f\x3d\x09\x63\x20\x23\ -\x43\x32\x42\x46\x43\x46\x22\x2c\x0a\x22\x70\x3d\x09\x63\x20\x23\ -\x45\x42\x45\x42\x45\x45\x22\x2c\x0a\x22\x71\x3d\x09\x63\x20\x23\ -\x43\x45\x44\x41\x45\x31\x22\x2c\x0a\x22\x72\x3d\x09\x63\x20\x23\ -\x41\x44\x43\x32\x44\x30\x22\x2c\x0a\x22\x73\x3d\x09\x63\x20\x23\ -\x41\x35\x42\x43\x43\x41\x22\x2c\x0a\x22\x74\x3d\x09\x63\x20\x23\ 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-\x44\x42\x44\x39\x45\x33\x22\x2c\x0a\x22\x49\x3d\x09\x63\x20\x23\ -\x44\x39\x44\x37\x45\x31\x22\x2c\x0a\x22\x4a\x3d\x09\x63\x20\x23\ -\x44\x41\x44\x38\x45\x32\x22\x2c\x0a\x22\x4b\x3d\x09\x63\x20\x23\ -\x45\x31\x45\x30\x45\x38\x22\x2c\x0a\x22\x4c\x3d\x09\x63\x20\x23\ -\x45\x43\x45\x43\x46\x30\x22\x2c\x0a\x22\x4d\x3d\x09\x63\x20\x23\ -\x46\x38\x46\x38\x46\x38\x22\x2c\x0a\x22\x4e\x3d\x09\x63\x20\x23\ -\x44\x36\x45\x32\x45\x38\x22\x2c\x0a\x22\x4f\x3d\x09\x63\x20\x23\ -\x46\x37\x46\x39\x46\x39\x22\x2c\x0a\x22\x50\x3d\x09\x63\x20\x23\ -\x39\x30\x41\x44\x43\x30\x22\x2c\x0a\x22\x51\x3d\x09\x63\x20\x23\ -\x42\x36\x43\x39\x44\x36\x22\x2c\x0a\x22\x52\x3d\x09\x63\x20\x23\ -\x44\x36\x45\x31\x45\x37\x22\x2c\x0a\x22\x53\x3d\x09\x63\x20\x23\ -\x38\x35\x41\x35\x42\x42\x22\x2c\x0a\x22\x54\x3d\x09\x63\x20\x23\ -\x39\x38\x42\x33\x43\x33\x22\x2c\x0a\x22\x55\x3d\x09\x63\x20\x23\ -\x43\x46\x44\x42\x45\x31\x22\x2c\x0a\x22\x56\x3d\x09\x63\x20\x23\ -\x39\x37\x42\x32\x43\x35\x22\x2c\x0a\x22\x57\x3d\x09\x63\x20\x23\ -\x37\x35\x39\x39\x42\x33\x22\x2c\x0a\x22\x58\x3d\x09\x63\x20\x23\ -\x39\x30\x41\x44\x43\x31\x22\x2c\x0a\x22\x59\x3d\x09\x63\x20\x23\ -\x43\x36\x44\x35\x44\x44\x22\x2c\x0a\x22\x5a\x3d\x09\x63\x20\x23\ -\x34\x46\x37\x45\x39\x45\x22\x2c\x0a\x22\x60\x3d\x09\x63\x20\x23\ -\x41\x34\x42\x43\x43\x42\x22\x2c\x0a\x22\x20\x2d\x09\x63\x20\x23\ -\x44\x34\x44\x46\x45\x35\x22\x2c\x0a\x22\x2e\x2d\x09\x63\x20\x23\ -\x39\x43\x42\x36\x43\x38\x22\x2c\x0a\x22\x2b\x2d\x09\x63\x20\x23\ -\x42\x35\x43\x38\x44\x35\x22\x2c\x0a\x22\x40\x2d\x09\x63\x20\x23\ -\x42\x34\x43\x37\x44\x35\x22\x2c\x0a\x22\x23\x2d\x09\x63\x20\x23\ -\x42\x36\x43\x39\x44\x34\x22\x2c\x0a\x22\x24\x2d\x09\x63\x20\x23\ -\x42\x46\x44\x31\x44\x42\x22\x2c\x0a\x22\x25\x2d\x09\x63\x20\x23\ -\x38\x36\x41\x36\x42\x43\x22\x2c\x0a\x22\x26\x2d\x09\x63\x20\x23\ -\x39\x41\x42\x34\x43\x35\x22\x2c\x0a\x22\x2a\x2d\x09\x63\x20\x23\ -\x45\x33\x45\x41\x45\x44\x22\x2c\x0a\x22\x3d\x2d\x09\x63\x20\x23\ -\x41\x36\x42\x43\x43\x41\x22\x2c\x0a\x22\x2d\x2d\x09\x63\x20\x23\ -\x37\x31\x39\x36\x42\x30\x22\x2c\x0a\x22\x3b\x2d\x09\x63\x20\x23\ -\x41\x37\x42\x45\x43\x44\x22\x2c\x0a\x22\x3e\x2d\x09\x63\x20\x23\ -\x41\x46\x43\x34\x44\x31\x22\x2c\x0a\x22\x2c\x2d\x09\x63\x20\x23\ -\x45\x38\x45\x45\x46\x30\x22\x2c\x0a\x22\x27\x2d\x09\x63\x20\x23\ -\x39\x36\x42\x30\x43\x32\x22\x2c\x0a\x22\x29\x2d\x09\x63\x20\x23\ -\x46\x31\x46\x34\x46\x34\x22\x2c\x0a\x22\x21\x2d\x09\x63\x20\x23\ -\x42\x30\x43\x35\x44\x32\x22\x2c\x0a\x22\x7e\x2d\x09\x63\x20\x23\ -\x36\x36\x38\x45\x41\x39\x22\x2c\x0a\x22\x7b\x2d\x09\x63\x20\x23\ -\x35\x37\x38\x33\x41\x32\x22\x2c\x0a\x22\x5d\x2d\x09\x63\x20\x23\ -\x42\x37\x43\x41\x44\x35\x22\x2c\x0a\x22\x5e\x2d\x09\x63\x20\x23\ -\x39\x30\x41\x43\x43\x31\x22\x2c\x0a\x22\x2f\x2d\x09\x63\x20\x23\ -\x35\x34\x38\x31\x41\x31\x22\x2c\x0a\x22\x28\x2d\x09\x63\x20\x23\ 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\x00\x72\x00\x61\x00\x6e\x00\x63\x00\x68\x00\x2d\x00\x63\x00\x6c\x00\x6f\x00\x73\x00\x65\x00\x64\x00\x2e\x00\x70\x00\x6e\x00\x67\ \ -\x00\x0c\ -\x07\x3c\x74\x8d\ -\x00\x64\ -\x00\x67\x00\x73\x00\x5f\x00\x69\x00\x63\x00\x6f\x00\x6e\x00\x2e\x00\x78\x00\x70\x00\x6d\ +\x00\x10\ +\x05\xe2\x69\x67\ +\x00\x6d\ +\x00\x65\x00\x74\x00\x65\x00\x72\x00\x5f\x00\x63\x00\x6f\x00\x6e\x00\x66\x00\x69\x00\x67\x00\x2e\x00\x70\x00\x6e\x00\x67\ +\x00\x0e\ +\x03\x1e\x07\xc7\ +\x00\x67\ +\x00\x65\x00\x6f\x00\x69\x00\x64\x00\x5f\x00\x69\x00\x63\x00\x6f\x00\x6e\x00\x2e\x00\x70\x00\x6e\x00\x67\ +\x00\x0f\ +\x0a\x1f\xa8\x07\ +\x00\x66\ +\x00\x6c\x00\x69\x00\x67\x00\x68\x00\x74\x00\x5f\x00\x69\x00\x63\x00\x6f\x00\x6e\x00\x2e\x00\x70\x00\x6e\x00\x67\ +\x00\x0f\ +\x04\x18\x96\x07\ +\x00\x66\ +\x00\x6f\x00\x6c\x00\x64\x00\x65\x00\x72\x00\x5f\x00\x6f\x00\x70\x00\x65\x00\x6e\x00\x2e\x00\x70\x00\x6e\x00\x67\ \x00\x0d\ \x0d\x10\x1d\x07\ \x00\x62\ @@ -9522,18 +9730,26 @@ \x06\x53\x91\xa7\ \x00\x62\ \x00\x72\x00\x61\x00\x6e\x00\x63\x00\x68\x00\x2d\x00\x6f\x00\x70\x00\x65\x00\x6e\x00\x2e\x00\x70\x00\x6e\x00\x67\ +\x00\x0c\ +\x07\x3c\x74\x8d\ +\x00\x64\ +\x00\x67\x00\x73\x00\x5f\x00\x69\x00\x63\x00\x6f\x00\x6e\x00\x2e\x00\x78\x00\x70\x00\x6d\ " qt_resource_struct_v1 = b"\ \x00\x00\x00\x00\x00\x02\x00\x00\x00\x01\x00\x00\x00\x01\ \x00\x00\x00\x00\x00\x02\x00\x00\x00\x01\x00\x00\x00\x02\ -\x00\x00\x00\x12\x00\x02\x00\x00\x00\x06\x00\x00\x00\x03\ -\x00\x00\x00\x48\x00\x00\x00\x00\x00\x01\x00\x00\x01\xe2\ -\x00\x00\x00\xd0\x00\x00\x00\x00\x00\x01\x00\x02\x4e\x37\ -\x00\x00\x00\x92\x00\x00\x00\x00\x00\x01\x00\x01\xfa\x37\ +\x00\x00\x00\x12\x00\x02\x00\x00\x00\x0a\x00\x00\x00\x03\ \x00\x00\x00\x24\x00\x00\x00\x00\x00\x01\x00\x00\x00\x00\ -\x00\x00\x00\x6a\x00\x00\x00\x00\x00\x01\x00\x01\xf8\xe5\ -\x00\x00\x00\xb0\x00\x00\x00\x00\x00\x01\x00\x02\x4a\x66\ +\x00\x00\x00\xbc\x00\x00\x00\x00\x00\x01\x00\x00\x07\x76\ +\x00\x00\x01\x02\x00\x00\x00\x00\x00\x01\x00\x02\x00\x5b\ +\x00\x00\x00\x96\x00\x00\x00\x00\x00\x01\x00\x00\x05\x0b\ +\x00\x00\x01\x46\x00\x00\x00\x00\x00\x01\x00\x02\x05\xbd\ +\x00\x00\x01\x6a\x00\x00\x00\x00\x00\x01\x00\x02\x07\x1b\ +\x00\x00\x00\xde\x00\x00\x00\x00\x00\x01\x00\x01\xfe\x79\ +\x00\x00\x00\x6e\x00\x00\x00\x00\x00\x01\x00\x00\x03\xb9\ +\x00\x00\x01\x26\x00\x00\x00\x00\x00\x01\x00\x02\x01\xec\ +\x00\x00\x00\x48\x00\x00\x00\x00\x00\x01\x00\x00\x02\xd2\ " qt_resource_struct_v2 = b"\ @@ -9541,20 +9757,28 @@ \x00\x00\x00\x00\x00\x00\x00\x00\ \x00\x00\x00\x00\x00\x02\x00\x00\x00\x01\x00\x00\x00\x02\ \x00\x00\x00\x00\x00\x00\x00\x00\ -\x00\x00\x00\x12\x00\x02\x00\x00\x00\x06\x00\x00\x00\x03\ +\x00\x00\x00\x12\x00\x02\x00\x00\x00\x0a\x00\x00\x00\x03\ \x00\x00\x00\x00\x00\x00\x00\x00\ -\x00\x00\x00\x48\x00\x00\x00\x00\x00\x01\x00\x00\x01\xe2\ -\x00\x00\x01\x5e\x3f\x2e\x79\xa0\ -\x00\x00\x00\xd0\x00\x00\x00\x00\x00\x01\x00\x02\x4e\x37\ -\x00\x00\x01\x5e\x4f\x8e\x65\xbf\ -\x00\x00\x00\x92\x00\x00\x00\x00\x00\x01\x00\x01\xfa\x37\ -\x00\x00\x01\x5e\x34\xe1\x4c\x70\ \x00\x00\x00\x24\x00\x00\x00\x00\x00\x01\x00\x00\x00\x00\ -\x00\x00\x01\x5e\x3f\x18\x3e\x38\ -\x00\x00\x00\x6a\x00\x00\x00\x00\x00\x01\x00\x01\xf8\xe5\ -\x00\x00\x01\x5e\x4f\x8e\x4c\xff\ -\x00\x00\x00\xb0\x00\x00\x00\x00\x00\x01\x00\x02\x4a\x66\ -\x00\x00\x01\x5e\x3f\x23\x04\x08\ +\x00\x00\x01\x52\x22\x1e\x86\xe0\ +\x00\x00\x00\xbc\x00\x00\x00\x00\x00\x01\x00\x00\x07\x76\ +\x00\x00\x01\x5e\x7d\xff\xcb\x9c\ +\x00\x00\x01\x02\x00\x00\x00\x00\x00\x01\x00\x02\x00\x5b\ +\x00\x00\x01\x52\x22\x16\xc6\x80\ +\x00\x00\x00\x96\x00\x00\x00\x00\x00\x01\x00\x00\x05\x0b\ +\x00\x00\x01\x52\x22\x1d\xfa\x40\ +\x00\x00\x01\x46\x00\x00\x00\x00\x00\x01\x00\x02\x05\xbd\ +\x00\x00\x01\x5e\x7d\xff\xcb\x9c\ +\x00\x00\x01\x6a\x00\x00\x00\x00\x00\x01\x00\x02\x07\x1b\ +\x00\x00\x01\x5e\x7d\xff\xcb\x9c\ +\x00\x00\x00\xde\x00\x00\x00\x00\x00\x01\x00\x01\xfe\x79\ +\x00\x00\x01\x5e\x7d\xff\xcb\x9c\ +\x00\x00\x00\x6e\x00\x00\x00\x00\x00\x01\x00\x00\x03\xb9\ +\x00\x00\x01\x5e\x7d\xff\xcb\x9c\ +\x00\x00\x01\x26\x00\x00\x00\x00\x00\x01\x00\x02\x01\xec\ +\x00\x00\x01\x5e\x7d\xff\xcb\x9c\ +\x00\x00\x00\x48\x00\x00\x00\x00\x00\x01\x00\x00\x02\xd2\ +\x00\x00\x01\x52\x22\x25\x5c\xe0\ " qt_version = QtCore.qVersion().split('.') diff --git a/tests/test_project.py b/tests/test_project.py index 77aca45..0fe8664 100644 --- a/tests/test_project.py +++ b/tests/test_project.py @@ -71,7 +71,6 @@ def test_flight_iteration(self): lines = [line0, line1] for line in test_flight: - print(line) self.assertTrue(line in lines) # TODO: Fix ImportWarning generated by pytables? @@ -89,7 +88,7 @@ def test_associate_flight_data(self): data1path = os.path.abspath(data1) self.assertTrue(data1path in self.project.data_sources.values()) - test_df = read_at1m(data1) + test_df = read_at1a(data1) grav_data, gps_data = self.project.get_data(flt) self.assertTrue(test_df.equals(grav_data)) self.assertIsNone(gps_data) From 527bb033f0e7c0b6dc12630bd8faf507b727813c Mon Sep 17 00:00:00 2001 From: bradyzp Date: Mon, 18 Sep 2017 18:26:16 -0600 Subject: [PATCH 005/236] ENH: Gui info context menu improvements --- dgp/gui/dialogs.py | 29 +++++++++++- dgp/gui/ui/add_flight_dialog.ui | 78 +++++++++++++++++++++++++++------ dgp/lib/plotter.py | 2 + 3 files changed, 94 insertions(+), 15 deletions(-) diff --git a/dgp/gui/dialogs.py b/dgp/gui/dialogs.py index 965eca1..a9ca132 100644 --- a/dgp/gui/dialogs.py +++ b/dgp/gui/dialogs.py @@ -4,6 +4,7 @@ import sys import json import logging +import functools import datetime from pathlib import Path from typing import Dict, Union @@ -117,6 +118,8 @@ def __init__(self, project, *args): self._project = project self._flight = None self.combo_meter.addItems(project.meters) + self.browse_gravity.clicked.connect(functools.partial(self.browse, field=self.path_gravity)) + self.browse_gps.clicked.connect(functools.partial(self.browse, field=self.path_gps)) self.date_flight.setDate(datetime.datetime.today()) self._uid = prj.Flight.generate_uuid() self.text_uuid.setText(self._uid) @@ -128,6 +131,12 @@ def accept(self): self.combo_meter.currentText()), uuid=self._uid, date=date) super().accept() + def browse(self, field): + path, _ = QtWidgets.QFileDialog.getOpenFileName(self, "Select Data File", os.getcwd(), "Data (*.dat *.csv)") + if path: + field.setText(path) + + @property def flight(self): return self._flight @@ -241,8 +250,26 @@ def data(self, index: QtCore.QModelIndex, role=None): return QtCore.QVariant() def flags(self, index: QtCore.QModelIndex): - return QtCore.Qt.ItemIsSelectable | QtCore.Qt.ItemIsEnabled + flags = QtCore.Qt.ItemIsSelectable | QtCore.Qt.ItemIsEnabled + if index.column() == 1: # Allow the values column to be edited + flags = flags | QtCore.Qt.ItemIsEditable + return flags def headerData(self, section, orientation, role=None): if role == QtCore.Qt.DisplayRole and orientation == QtCore.Qt.Horizontal: return ['Key', 'Value'][section] + + # Required implementations of super class for editable table + + def setData(self, index: QtCore.QModelIndex, value: QtCore.QVariant, role=None): + """Basic implementation of editable model. This doesn't propogate the changes to the underlying + object upon which the model was based though (yet)""" + if index.isValid() and role == QtCore.Qt.ItemIsEditable: + old_data = self._data[index.row()] + print("Setting value of item at {}:{} to {}".format(index.row(), index.column(), value)) + new_data = old_data[0], str(value) + self._data[index.row()] = new_data + self.dataChanged.emit(index, index) + return True + else: + return False diff --git a/dgp/gui/ui/add_flight_dialog.ui b/dgp/gui/ui/add_flight_dialog.ui index f1082aa..fc125d4 100644 --- a/dgp/gui/ui/add_flight_dialog.ui +++ b/dgp/gui/ui/add_flight_dialog.ui @@ -6,14 +6,14 @@ 0 0 - 400 - 400 + 650 + 650 - 450 - 450 + 10000 + 10000 @@ -168,16 +168,41 @@ - + + + + 2 + 0 + + + + + 200 + 0 + + + - + + + + 0 + 0 + + - 30 + 16777215 16777215 + + + 50 + 0 + + ... @@ -191,23 +216,48 @@ GPS Data - lineEdit + path_gps - + + + + 2 + 0 + + + + + 200 + 0 + + + - + + + + 0 + 0 + + - 30 + 16777215 16777215 + + + 50 + 0 + + ... @@ -222,9 +272,9 @@ date_flight combo_meter path_gravity - browse_grav - lineEdit - pushButton + browse_gravity + path_gps + browse_gps table_flight_param text_uuid diff --git a/dgp/lib/plotter.py b/dgp/lib/plotter.py index c68aef9..60e0ef7 100644 --- a/dgp/lib/plotter.py +++ b/dgp/lib/plotter.py @@ -121,6 +121,8 @@ def onclick(self, event: MouseEvent): # Check that the click event happened within one of the subplot axes if event.inaxes not in self._axes: return + print("Xdata: {}".format(event.xdata)) + self.log.info("Xdata: {}".format(event.xdata)) caxes = event.inaxes # type: Axes other_axes = [ax for ax in self._axes if ax != caxes] From 8116c65f1de1001e4c071560579462ed45185e45 Mon Sep 17 00:00:00 2001 From: bradyzp Date: Mon, 18 Sep 2017 20:26:33 -0600 Subject: [PATCH 006/236] ENH: Improvements and generalizations to TableModel for use in GUI --- dgp/gui/dialogs.py | 101 +++++++++++--------------------- dgp/gui/main.py | 89 +++++++++++++++------------- dgp/gui/models.py | 81 +++++++++++++++++++++++++ dgp/gui/ui/add_flight_dialog.ui | 86 ++++++++------------------- 4 files changed, 188 insertions(+), 169 deletions(-) create mode 100644 dgp/gui/models.py diff --git a/dgp/gui/dialogs.py b/dgp/gui/dialogs.py index a9ca132..f717482 100644 --- a/dgp/gui/dialogs.py +++ b/dgp/gui/dialogs.py @@ -1,18 +1,16 @@ # coding: utf-8 import os -import sys -import json -import logging import functools import datetime -from pathlib import Path +import pathlib from typing import Dict, Union from PyQt5 import Qt, QtWidgets, QtCore from PyQt5.uic import loadUiType import dgp.lib.project as prj +from dgp.gui.models import TableModel data_dialog, _ = loadUiType('dgp/gui/ui/data_import_dialog.ui') @@ -23,7 +21,6 @@ class ImportData(QtWidgets.QDialog, data_dialog): """ - Rationalization: This dialog will be used to import gravity and/or GPS data. A drop down box will be populated with the available project flights into which the data will be associated @@ -80,7 +77,7 @@ def init_tree(self): self.tree_directory.clicked.connect(self.select_tree_file) def select_tree_file(self, index): - path = Path(self.file_model.filePath(index)) + path = pathlib.Path(self.file_model.filePath(index)) # TODO: Verify extensions for selected files before setting below if path.is_file(): self.field_path.setText(os.path.normpath(path)) # TODO: Change this to use pathlib function @@ -91,7 +88,7 @@ def select_tree_file(self, index): def browse_file(self): path, _ = QtWidgets.QFileDialog.getOpenFileName(self, "Select Data File", os.getcwd(), "Data (*.dat *.csv)") if path: - self.path = Path(path) + self.path = pathlib.Path(path) self.field_path.setText(self.path.name) index = self.file_model.index(str(self.path.resolve())) self.tree_directory.scrollTo(self.file_model.index(str(self.path.resolve()))) @@ -107,7 +104,7 @@ def accept(self): super().accept() @property - def content(self) -> (Path, str, prj.Flight): + def content(self) -> (pathlib.Path, str, prj.Flight): return self.path, self.dtype, self.flight @@ -117,6 +114,8 @@ def __init__(self, project, *args): self.setupUi(self) self._project = project self._flight = None + self._grav_path = None + self._gps_path = None self.combo_meter.addItems(project.meters) self.browse_gravity.clicked.connect(functools.partial(self.browse, field=self.path_gravity)) self.browse_gps.clicked.connect(functools.partial(self.browse, field=self.path_gps)) @@ -124,23 +123,41 @@ def __init__(self, project, *args): self._uid = prj.Flight.generate_uuid() self.text_uuid.setText(self._uid) + self.params_model = TableModel(['Key', 'Start Value', 'End Value'], editable=[1, 2]) + self.params_model.append('Tie Location') + self.params_model.append('Tie Reading') + self.flight_params.setModel(self.params_model) + def accept(self): qdate = self.date_flight.date() # type: QtCore.QDate date = datetime.date(qdate.year(), qdate.month(), qdate.day()) self._flight = prj.Flight(self._project, self.text_name.text(), self._project.get_meter( self.combo_meter.currentText()), uuid=self._uid, date=date) + print(self.params_model.updates) super().accept() def browse(self, field): - path, _ = QtWidgets.QFileDialog.getOpenFileName(self, "Select Data File", os.getcwd(), "Data (*.dat *.csv)") + path, _ = QtWidgets.QFileDialog.getOpenFileName(self, "Select Data File", os.getcwd(), + "Data (*.dat *.csv)") if path: field.setText(path) - @property def flight(self): return self._flight + @property + def gps(self): + if self._gps_path is not None: + return pathlib.Path(self._gps_path) + return None + + @property + def gravity(self): + if self._grav_path is not None: + return pathlib.Path(self._grav_path) + return None + class CreateProject(QtWidgets.QDialog, project_dialog): def __init__(self, *args): @@ -185,10 +202,11 @@ def create_project(self): if self.prj_type_list.currentItem().data(QtCore.Qt.UserRole) == 'dgs_airborne': name = str(self.prj_name.text()).rstrip() - path = Path(self.prj_dir.text()).joinpath(name) + path = pathlib.Path(self.prj_dir.text()).joinpath(name) if not path.exists(): path.mkdir(parents=True) - self._project = prj.AirborneProject(path, name, self.prj_description.toPlainText().rstrip()) + self._project = prj.AirborneProject(path, name, + self.prj_description.toPlainText().rstrip()) else: self.label_required.setText('Invalid project type (Not Implemented)') return @@ -209,7 +227,8 @@ class InfoDialog(QtWidgets.QDialog, info_dialog): def __init__(self, model, parent=None, **kwargs): super().__init__(parent=parent, **kwargs) self.setupUi(self) - self.setModel(model) + self._model = model + self.setModel(self._model) def setModel(self, model): table = self.table_info # type: QtWidgets.QTableView @@ -220,56 +239,6 @@ def setModel(self, model): width += table.columnWidth(col_idx) self.resize(width, self.height()) - -class InfoModel(QtCore.QAbstractTableModel): - """Simple table model of key: value pairs.""" - def __init__(self, parent=None): - super().__init__(parent=parent) - # A list of 2-tuples (key: value pairs) which will be the table rows - self._data = [] - - def set_object(self, obj): - """Populates the model with key, value pairs from the passed objects' __dict__""" - for key, value in obj.__dict__.items(): - self.add_row(key, value) - - def add_row(self, key, value): - self._data.append((str(key), repr(value))) - - # Required implementations of super class (for a basic, non-editable table) - - def rowCount(self, parent=None, *args, **kwargs): - return len(self._data) - - def columnCount(self, parent=None, *args, **kwargs): - return 2 - - def data(self, index: QtCore.QModelIndex, role=None): - if role == QtCore.Qt.DisplayRole: - return self._data[index.row()][index.column()] - return QtCore.QVariant() - - def flags(self, index: QtCore.QModelIndex): - flags = QtCore.Qt.ItemIsSelectable | QtCore.Qt.ItemIsEnabled - if index.column() == 1: # Allow the values column to be edited - flags = flags | QtCore.Qt.ItemIsEditable - return flags - - def headerData(self, section, orientation, role=None): - if role == QtCore.Qt.DisplayRole and orientation == QtCore.Qt.Horizontal: - return ['Key', 'Value'][section] - - # Required implementations of super class for editable table - - def setData(self, index: QtCore.QModelIndex, value: QtCore.QVariant, role=None): - """Basic implementation of editable model. This doesn't propogate the changes to the underlying - object upon which the model was based though (yet)""" - if index.isValid() and role == QtCore.Qt.ItemIsEditable: - old_data = self._data[index.row()] - print("Setting value of item at {}:{} to {}".format(index.row(), index.column(), value)) - new_data = old_data[0], str(value) - self._data[index.row()] = new_data - self.dataChanged.emit(index, index) - return True - else: - return False + def accept(self): + self.updates = self._model.updates + super().accept() diff --git a/dgp/gui/main.py b/dgp/gui/main.py index 67a8d3c..c7739d1 100644 --- a/dgp/gui/main.py +++ b/dgp/gui/main.py @@ -1,8 +1,9 @@ # coding: utf-8 +import os +import pathlib import functools import logging -import os from typing import Tuple, List, Dict from pandas import Series, DataFrame @@ -12,11 +13,11 @@ from PyQt5.uic import loadUiType import dgp.lib.project as prj -import dgp.lib.trajectory_ingestor as ti from dgp.gui.loader import LoadFile from dgp.lib.plotter import LineGrabPlot from dgp.gui.utils import ConsoleHandler, LOG_FORMAT, get_project_file -from dgp.gui.dialogs import ImportData, AddFlight, CreateProject, InfoDialog, InfoModel +from dgp.gui.dialogs import ImportData, AddFlight, CreateProject, InfoDialog +from dgp.gui.models import TableModel # Load .ui form main_window, _ = loadUiType('dgp/gui/ui/main_window.ui') @@ -180,21 +181,21 @@ def _init_slots(self): # File Menu Actions # self.action_exit.triggered.connect(self.exit) - self.action_file_new.triggered.connect(self.new_project) - self.action_file_open.triggered.connect(self.open_project) + self.action_file_new.triggered.connect(self.new_project_dialog) + self.action_file_open.triggered.connect(self.open_project_dialog) self.action_file_save.triggered.connect(self.save_project) # Project Menu Actions # - self.action_import_data.triggered.connect(self.import_data) - self.action_add_flight.triggered.connect(self.add_flight) + self.action_import_data.triggered.connect(self.import_data_dialog) + self.action_add_flight.triggered.connect(self.add_flight_dialog) # Project Tree View Actions # # self.prj_tree.doubleClicked.connect(self.log_tree) self.project_tree.clicked.connect(self.flight_changed) # Project Control Buttons # - self.prj_add_flight.clicked.connect(self.add_flight) - self.prj_import_data.clicked.connect(self.import_data) + self.prj_add_flight.clicked.connect(self.add_flight_dialog) + self.prj_import_data.clicked.connect(self.import_data_dialog) # Channel Panel Buttons # # self.selectAllChannels.clicked.connect(self.set_channel_state) @@ -356,11 +357,25 @@ def plot_gravity(plot: LineGrabPlot, data: DataFrame, fields: Dict): def plot_gps(self): pass + def import_data(self, path: pathlib.Path, dtype: str, flight: prj.Flight): + loader = LoadFile(path, dtype, flight.uid, self) + + # Curry functions to execute on thread completion. + add_data = functools.partial(self.project.add_data, flight_uid=flight.uid) + tree_refresh = functools.partial(self.project_tree.refresh, curr_flightid=flight.uid) + redraw_flt = functools.partial(self.redraw, flight.uid) + + loader.data.connect(add_data) + loader.loaded.connect(tree_refresh) + loader.loaded.connect(redraw_flt) + loader.loaded.connect(self.save_project) + loader.start() + ##### - # Project functions + # Project dialog functions ##### - def import_data(self) -> None: + def import_data_dialog(self) -> None: """Load data file (GPS or Gravity) using a background Thread, then hand it off to the project.""" dialog = ImportData(self.project, self.current_flight) @@ -370,22 +385,9 @@ def import_data(self) -> None: plot, _ = self.flight_plots[flt_id] plot.plotted = False self.log.info("Importing {} file from {} into flight: {}".format(dtype, path, flight.uid)) + self.import_data(path, dtype, flight) - loader = LoadFile(path, dtype, flight, self) - add_data = functools.partial(self.project.add_data, flight_uid=flight.uid) - - loader.data.connect(add_data) - loader.loaded.connect(functools.partial(self.project_tree.refresh, - curr_flightid=flt_id)) - loader.loaded.connect(functools.partial(self.redraw, flt_id)) - loader.loaded.connect(self.save_project) - - loader.start() - - # gps_fields = ['mdy', 'hms', 'lat', 'lon', 'ell_ht', 'ortho_ht', 'num_sats', 'pdop'] - # self.gps_data = ti.import_trajectory(path, columns=gps_fields, skiprows=1) - - def new_project(self) -> QtWidgets.QMainWindow: + def new_project_dialog(self) -> QtWidgets.QMainWindow: new_window = True dialog = CreateProject() if dialog.exec_(): @@ -401,7 +403,7 @@ def new_project(self) -> QtWidgets.QMainWindow: # TODO: This will eventually require a dialog to allow selection of project type, or # a metadata file in the project directory specifying type info - def open_project(self) -> None: + def open_project_dialog(self) -> None: path = QtWidgets.QFileDialog.getExistingDirectory(self, "Open Project Directory", os.path.abspath('..')) if not path: return @@ -415,29 +417,35 @@ def open_project(self) -> None: self.update_project() return - def save_project(self) -> None: - if self.project is None: - return - if self.project.save(): - self.setWindowTitle(self.title + ' - {} [*]'.format(self.project.name)) - self.setWindowModified(False) - self.log.info("Project saved.") - else: - self.log.info("Error saving project.") - @autosave - def add_flight(self) -> None: + def add_flight_dialog(self) -> None: dialog = AddFlight(self.project) if dialog.exec_(): self.log.info("Adding flight:") flight = dialog.flight self.project.add_flight(flight) + + if dialog.gravity: + pass + if dialog.gps: + pass + plot, widget = self._new_plot_widget(flight.name, rows=2) self.gravity_stack.addWidget(widget) self.flight_plots[flight.uid] = plot, widget self.project_tree.refresh(curr_flightid=flight.uid) return + def save_project(self) -> None: + if self.project is None: + return + if self.project.save(): + self.setWindowTitle(self.title + ' - {} [*]'.format(self.project.name)) + self.setWindowModified(False) + self.log.info("Project saved.") + else: + self.log.info("Error saving project.") + class ProjectTreeView(QtWidgets.QTreeView): def __init__(self, project=None, parent=None): @@ -549,8 +557,6 @@ def generate_airborne_model(self, project: prj.AirborneProject): def contextMenuEvent(self, event: QtGui.QContextMenuEvent, *args, **kwargs): context_ind = self.indexAt(event.pos()) context_focus = self.model().itemFromIndex(context_ind) - print(context_focus) - print(context_focus.text()) info_slot = functools.partial(self.flight_info, context_focus) menu = QtWidgets.QMenu() @@ -564,7 +570,8 @@ def flight_info(self, item): data = item.data(QtCore.Qt.UserRole) if not (isinstance(data, prj.Flight) or isinstance(data, prj.GravityProject)): return - model = InfoModel() + model = TableModel(['Key', 'Blargl']) model.set_object(data) dialog = InfoDialog(model, parent=self) dialog.exec_() + print(dialog.updates) diff --git a/dgp/gui/models.py b/dgp/gui/models.py new file mode 100644 index 0000000..d69674b --- /dev/null +++ b/dgp/gui/models.py @@ -0,0 +1,81 @@ +# coding: utf-8 + +"""Provide definitions of the models used by the Qt Application in our model/view widgets.""" + +from PyQt5 import QtCore + + +class TableModel(QtCore.QAbstractTableModel): + """Simple table model of key: value pairs.""" + + def __init__(self, columns, editable=None, parent=None): + super().__init__(parent=parent) + # TODO: Allow specification of which columns are editable + # List of column headers + self._cols = columns + self._editable = editable + # A list of 2-tuples (key: value pairs) which will be the table rows + self._rows = [] + self._updates = {} + + def set_object(self, obj): + """Populates the model with key, value pairs from the passed objects' __dict__""" + for key, value in obj.__dict__.items(): + self.append(key, value) + + def append(self, *args): + """Add a new row of data to the table, trimming input array to length of columns.""" + self._rows.append(args[:len(self._cols)]) + return True + + @property + def updates(self): + return self._updates + + @property + def data(self): + # TODO: Work on some sort of mapping to map column headers to row values + return self._rows + + # Required implementations of super class (for a basic, non-editable table) + + def rowCount(self, parent=None, *args, **kwargs): + return len(self._rows) + + def columnCount(self, parent=None, *args, **kwargs): + return len(self._cols) + + def data(self, index: QtCore.QModelIndex, role=None): + if role == QtCore.Qt.DisplayRole: + try: + return self._rows[index.row()][index.column()] + except IndexError: + return None + return QtCore.QVariant() + + def flags(self, index: QtCore.QModelIndex): + flags = QtCore.Qt.ItemIsSelectable | QtCore.Qt.ItemIsEnabled + if index.column() in self._editable: # Allow the values column to be edited + flags = flags | QtCore.Qt.ItemIsEditable + return flags + + def headerData(self, section, orientation, role=None): + if role == QtCore.Qt.DisplayRole and orientation == QtCore.Qt.Horizontal: + return self._cols[section] + + # Required implementations of super class for editable table + + def setData(self, index: QtCore.QModelIndex, value: QtCore.QVariant, role=None): + """Basic implementation of editable model. This doesn't propagate the changes to the underlying + object upon which the model was based though (yet)""" + if index.isValid() and role == QtCore.Qt.ItemIsEditable: + old_data = self._rows[index.row()] + print("Setting value of item at {}:{} to {}".format(index.row(), index.column(), value)) + new_data = old_data[0], str(value) + self._rows[index.row()] = new_data + self._updates[self._rows[index.row()][0]] = self._rows[index.row()][index.column()] + + self.dataChanged.emit(index, index) + return True + else: + return False diff --git a/dgp/gui/ui/add_flight_dialog.ui b/dgp/gui/ui/add_flight_dialog.ui index fc125d4..63ac114 100644 --- a/dgp/gui/ui/add_flight_dialog.ui +++ b/dgp/gui/ui/add_flight_dialog.ui @@ -77,60 +77,6 @@ - - - - Flight Parameters - - - table_flight_param - - - - - - - - Tie Value - - - - - Tie Location - - - - - Still Reading - - - - - Pre Reading - - - - - Post Reading - - - - - - - - Known Gravity Tie Value (mGal) - - - - - - - - QDialogButtonBox::Cancel|QDialogButtonBox::Ok - - - @@ -148,13 +94,6 @@ - - - - <html><head/><body><p align="right">*required fields</p></body></html> - - - @@ -265,6 +204,30 @@ + + + + Flight Parameters + + + + + + + QDialogButtonBox::Cancel|QDialogButtonBox::Ok + + + + + + + <html><head/><body><p align="right">*required fields</p></body></html> + + + + + + @@ -275,7 +238,6 @@ browse_gravity path_gps browse_gps - table_flight_param text_uuid From 8a594f4c52cb0fc938da2a7a762dd98711d75164 Mon Sep 17 00:00:00 2001 From: bradyzp Date: Tue, 19 Sep 2017 14:03:17 -0600 Subject: [PATCH 007/236] ENH: Added experimental decimation feature to plot Performing simple decimation on plot data based on the zoom level to increase performance when interacting with the plots. Some minor work on Flight dialog to enable specifying Flight data parameters in a table. --- dgp/gui/dialogs.py | 9 ++-- dgp/gui/loader.py | 1 + dgp/gui/main.py | 64 ++++++++++++++------------- dgp/gui/models.py | 19 +++++---- dgp/gui/splash.py | 2 +- dgp/gui/ui/main_window.ui | 18 +++++++- dgp/gui/ui/project_dialog.ui | 20 ++++++++- dgp/lib/plotter.py | 83 +++++++++++++++++++++++++++++++++--- dgp/lib/project.py | 2 + 9 files changed, 163 insertions(+), 55 deletions(-) diff --git a/dgp/gui/dialogs.py b/dgp/gui/dialogs.py index f717482..5d01924 100644 --- a/dgp/gui/dialogs.py +++ b/dgp/gui/dialogs.py @@ -131,6 +131,8 @@ def __init__(self, project, *args): def accept(self): qdate = self.date_flight.date() # type: QtCore.QDate date = datetime.date(qdate.year(), qdate.month(), qdate.day()) + self._grav_path = self.path_gravity.text() + self._gps_path = self.path_gps.text() self._flight = prj.Flight(self._project, self.text_name.text(), self._project.get_meter( self.combo_meter.currentText()), uuid=self._uid, date=date) print(self.params_model.updates) @@ -138,7 +140,7 @@ def accept(self): def browse(self, field): path, _ = QtWidgets.QFileDialog.getOpenFileName(self, "Select Data File", os.getcwd(), - "Data (*.dat *.csv)") + "Data (*.dat *.csv *.txt)") if path: field.setText(path) @@ -148,13 +150,13 @@ def flight(self): @property def gps(self): - if self._gps_path is not None: + if self._gps_path is not None and len(self._gps_path) > 0: return pathlib.Path(self._gps_path) return None @property def gravity(self): - if self._grav_path is not None: + if self._grav_path is not None and len(self._grav_path) > 0: return pathlib.Path(self._grav_path) return None @@ -229,6 +231,7 @@ def __init__(self, model, parent=None, **kwargs): self.setupUi(self) self._model = model self.setModel(self._model) + self.updates = None def setModel(self, model): table = self.table_info # type: QtWidgets.QTableView diff --git a/dgp/gui/loader.py b/dgp/gui/loader.py index cd37c22..3f1317a 100644 --- a/dgp/gui/loader.py +++ b/dgp/gui/loader.py @@ -29,5 +29,6 @@ def run(self): else: df = self._functor(self._path) data = DataPacket(df, self._path, self._dtype) + self.progress.emit(1) self.data.emit(data) self.loaded.emit() diff --git a/dgp/gui/main.py b/dgp/gui/main.py index c7739d1..eb8c51a 100644 --- a/dgp/gui/main.py +++ b/dgp/gui/main.py @@ -107,6 +107,8 @@ def __init__(self, project: prj.GravityProject=None, *args): # Initialize plotter canvas self.gravity_stack = QtWidgets.QStackedWidget() self.gravity_plot_layout.addWidget(self.gravity_stack) + self.gps_stack = QtWidgets.QStackedWidget() + self.gps_plot_layout.addWidget(self.gps_stack) # Initialize Variables # TODO: Change this to use pathlib.Path @@ -151,7 +153,7 @@ def _init_plots(self) -> None: if flight.uid in self.flight_plots: continue - plot, widget = self._new_plot_widget(flight.name, rows=2) + plot, widget = self._new_plot_widget(flight.name, rows=3) self.flight_plots[flight.uid] = plot, widget self.gravity_stack.addWidget(widget) @@ -240,7 +242,7 @@ def set_logging_level(self, name: str): def write_console(self, text, level): """PyQt Slot: Log a message to the GUI console""" - log_color = {'DEBUG': QColor('Blue'), 'INFO': QColor('Green'), 'WARNING': QColor('Red'), + log_color = {'DEBUG': QColor('DarkBlue'), 'INFO': QColor('Green'), 'WARNING': QColor('Red'), 'ERROR': QColor('Pink'), 'CRITICAL': QColor( 'Orange')}.get(level.upper(), QColor('Black')) @@ -248,28 +250,6 @@ def write_console(self, text, level): self.text_console.append(str(text)) self.text_console.verticalScrollBar().setValue(self.text_console.verticalScrollBar().maximum()) - # TODO: Delete after testing - def log_tree(self, index: QtCore.QModelIndex): - item = self.prj_tree.model().itemFromIndex(index) # type: QtWidgets.QListWidgetItem - text = str(item.text()) - return - # if text.startswith('Flight:'): - # self.log.debug("Clicked Flight object") - # _, flight_id = text.split(' ') - # flight = self.project.get_flight(flight_id) # type: prj.Flight - # self.log.debug(flight) - # grav_data = flight.gravity - # - # if grav_data is not None: - # self.log.debug(grav_data.describe()) - # else: - # self.log.debug("No grav data") - # - # self.log.debug(text) - # - # self.log.debug(item.toolTip()) - # print(dir(item)) - ##### # Plot functions ##### @@ -319,7 +299,7 @@ def flight_changed(self, index: QtCore.QModelIndex) -> None: # Check if there is a plot for this flight already if self.flight_plots.get(flight.uid, None) is not None: - curr_plot, stack_widget = self.flight_plots[flight.uid] # type: LineGrabPlot + grav_plot, stack_widget = self.flight_plots[flight.uid] # type: LineGrabPlot self.log.info("Switching widget stack") self.gravity_stack.setCurrentWidget(stack_widget) else: @@ -329,8 +309,8 @@ def flight_changed(self, index: QtCore.QModelIndex) -> None: # TODO: Move this (and gps plot) into separate functions # so we can call this on app startup to pre-plot everything if flight.gravity is not None: - if not curr_plot.plotted: - self.plot_gravity(curr_plot, flight.gravity, {0: 'gravity', 1: ['long', 'cross']}) + if not grav_plot.plotted: + self.plot_gravity(grav_plot, flight.gravity, {0: 'gravity', 1: ['long', 'cross']}) if flight.gps is not None: self.log.debug("Flight has GPS Data") @@ -346,29 +326,47 @@ def plot_gravity(plot: LineGrabPlot, data: DataFrame, fields: Dict): for index in fields: if isinstance(fields[index], str): series = data.get(fields[index]) # type: Series - plot.plot(plot[index], series.index, series.values, label=series.name) + # plot.plot(plot[index], series.index, series.values, label=series.name) + plot.plot2(plot[index], series) continue for field in fields[index]: series = data.get(field) # type: Series - plot.plot(plot[index], series.index, series.values, label=series.name) + # plot.plot(plot[index], series.index, series.values, label=series.name) + plot.plot2(plot[index], series) plot.draw() plot.plotted = True - def plot_gps(self): + @staticmethod + def plot_gps(plot: LineGrabPlot, data: DataFrame, fields: Dict): pass + def progress_dialog(self, title, min=0, max=1): + prg = QtWidgets.QProgressDialog(title, "Cancel", min, max, self) + prg.setModal(True) + prg.setMinimumDuration(0) + prg.setCancelButton(None) + prg.setValue(0) + return prg + def import_data(self, path: pathlib.Path, dtype: str, flight: prj.Flight): + self.log.info("Importing <{dtype}> from: Path({path}) into ".format(dtype=dtype, path=str(path), + name=flight.name)) + if path is None: + return False loader = LoadFile(path, dtype, flight.uid, self) # Curry functions to execute on thread completion. add_data = functools.partial(self.project.add_data, flight_uid=flight.uid) tree_refresh = functools.partial(self.project_tree.refresh, curr_flightid=flight.uid) redraw_flt = functools.partial(self.redraw, flight.uid) + prog = self.progress_dialog("Loading", 0, 0) loader.data.connect(add_data) + loader.progress.connect(prog.setValue) loader.loaded.connect(tree_refresh) loader.loaded.connect(redraw_flt) loader.loaded.connect(self.save_project) + loader.loaded.connect(prog.close) loader.start() ##### @@ -426,9 +424,9 @@ def add_flight_dialog(self) -> None: self.project.add_flight(flight) if dialog.gravity: - pass + self.import_data(dialog.gravity, 'gravity', flight) if dialog.gps: - pass + self.import_data(dialog.gps, 'gps', flight) plot, widget = self._new_plot_widget(flight.name, rows=2) self.gravity_stack.addWidget(widget) @@ -570,7 +568,7 @@ def flight_info(self, item): data = item.data(QtCore.Qt.UserRole) if not (isinstance(data, prj.Flight) or isinstance(data, prj.GravityProject)): return - model = TableModel(['Key', 'Blargl']) + model = TableModel(['Key', 'Value']) model.set_object(data) dialog = InfoDialog(model, parent=self) dialog.exec_() diff --git a/dgp/gui/models.py b/dgp/gui/models.py index d69674b..d308014 100644 --- a/dgp/gui/models.py +++ b/dgp/gui/models.py @@ -13,9 +13,8 @@ def __init__(self, columns, editable=None, parent=None): # TODO: Allow specification of which columns are editable # List of column headers self._cols = columns - self._editable = editable - # A list of 2-tuples (key: value pairs) which will be the table rows self._rows = [] + self._editable = editable self._updates = {} def set_object(self, obj): @@ -25,6 +24,12 @@ def set_object(self, obj): def append(self, *args): """Add a new row of data to the table, trimming input array to length of columns.""" + if not isinstance(args, list): + args = list(args) + while len(args) < len(self._cols): + # Pad the end + args.append(None) + self._rows.append(args[:len(self._cols)]) return True @@ -55,7 +60,8 @@ def data(self, index: QtCore.QModelIndex, role=None): def flags(self, index: QtCore.QModelIndex): flags = QtCore.Qt.ItemIsSelectable | QtCore.Qt.ItemIsEnabled - if index.column() in self._editable: # Allow the values column to be edited + + if self._editable is not None and index.column() in self._editable: # Allow the values column to be edited flags = flags | QtCore.Qt.ItemIsEditable return flags @@ -69,12 +75,7 @@ def setData(self, index: QtCore.QModelIndex, value: QtCore.QVariant, role=None): """Basic implementation of editable model. This doesn't propagate the changes to the underlying object upon which the model was based though (yet)""" if index.isValid() and role == QtCore.Qt.ItemIsEditable: - old_data = self._rows[index.row()] - print("Setting value of item at {}:{} to {}".format(index.row(), index.column(), value)) - new_data = old_data[0], str(value) - self._rows[index.row()] = new_data - self._updates[self._rows[index.row()][0]] = self._rows[index.row()][index.column()] - + self._rows[index.row()][index.column()] = value self.dataChanged.emit(index, index) return True else: diff --git a/dgp/gui/splash.py b/dgp/gui/splash.py index 39d9b36..d69fb09 100644 --- a/dgp/gui/splash.py +++ b/dgp/gui/splash.py @@ -56,7 +56,7 @@ def setup_logging(level=logging.DEBUG): return logging.getLogger(__name__) def accept(self, project=None): - """Runs some basic verification before calling QDialog accept().""" + """Runs some basic verification before calling super(QDialog).accept().""" # Case where project object is passed to accept() (when creating new project) if isinstance(project, prj.GravityProject): diff --git a/dgp/gui/ui/main_window.ui b/dgp/gui/ui/main_window.ui index 331b37a..39df0a7 100644 --- a/dgp/gui/ui/main_window.ui +++ b/dgp/gui/ui/main_window.ui @@ -49,7 +49,7 @@ - 0 + 1 @@ -647,5 +647,21 @@ + + info_dock + visibilityChanged(bool) + action_info_dock + setChecked(bool) + + + 744 + 973 + + + -1 + -1 + + + diff --git a/dgp/gui/ui/project_dialog.ui b/dgp/gui/ui/project_dialog.ui index ff5aec4..bb882cb 100644 --- a/dgp/gui/ui/project_dialog.ui +++ b/dgp/gui/ui/project_dialog.ui @@ -55,6 +55,12 @@ + + + 0 + 0 + + 200 @@ -65,6 +71,12 @@ + + + 0 + 0 + + Project Directory:* @@ -78,7 +90,7 @@ - + 0 1 @@ -93,6 +105,12 @@ + + + 0 + 0 + + 10 diff --git a/dgp/lib/plotter.py b/dgp/lib/plotter.py index 60e0ef7..1aa3abd 100644 --- a/dgp/lib/plotter.py +++ b/dgp/lib/plotter.py @@ -5,6 +5,7 @@ """ import logging +import datetime from collections import namedtuple from typing import List, Tuple @@ -14,13 +15,14 @@ NavigationToolbar2QT as NavigationToolbar) from matplotlib.figure import Figure from matplotlib.axes import Axes -from matplotlib.dates import DateFormatter +from matplotlib.dates import DateFormatter, num2date from matplotlib.backend_bases import MouseEvent from matplotlib.patches import Rectangle - +from pandas import Series import numpy as np + class BasePlottingCanvas(FigureCanvas): """ BasePlottingCanvas sets up the basic Qt Canvas parameters, and is designed @@ -95,7 +97,7 @@ class LineGrabPlot(BasePlottingCanvas): LineGrabPlot implements BasePlottingCanvas and provides an onclick method to select flight line segments. """ - def __init__(self, n=1, parent=None, title=None): + def __init__(self, n=1, title=None, parent=None): BasePlottingCanvas.__init__(self, parent=parent) self.rects = [] self.zooming = False @@ -103,10 +105,15 @@ def __init__(self, n=1, parent=None, title=None): self.clicked = None # type: ClickInfo self.generate_subplots(n) self.plotted = False + self.timespan = datetime.timedelta(0) + self.resample = slice(None, None, 20) + self._lines = {} if title: self.figure.suptitle(title, y=1) def clear(self): + self._lines = {} + self.resample = slice(None, None, 20) for ax in self._axes: # type: Axes ax.cla() ax.grid(True) @@ -155,6 +162,7 @@ def onclick(self, event: MouseEvent): c_rect = Rectangle((x0, y0), width, height*2, alpha=0.1) caxes.add_patch(c_rect) + caxes.draw_artist(caxes.patch) partners = [{'rect': c_rect, 'bg': None}] for ax in other_axes: @@ -164,11 +172,11 @@ def onclick(self, event: MouseEvent): height = ylim[1] - ylim[0] a_rect = Rectangle((x0, y0), width, height*2, alpha=0.1) ax.add_patch(a_rect) + ax.draw_artist(ax.patch) partners.append({'rect': a_rect, 'bg': None}) self.rects.append(partners) self.figure.canvas.draw() - # self.draw() return def toggle_zoom(self): @@ -211,12 +219,73 @@ def onrelease(self, event: MouseEvent): # self.draw() def plot(self, ax: Axes, xdata, ydata, **kwargs): - ax.plot(xdata, ydata, **kwargs) + if self._lines.get(id(ax), None) is None: + self._lines[id(ax)] = [] + line = ax.plot(xdata, ydata, **kwargs) + self._lines[id(ax)].append((line, xdata, ydata)) + self.timespan = self._timespan(*ax.get_xlim()) + ax.legend() + + def plot2(self, ax: Axes, series: Series): + if self._lines.get(id(ax), None) is None: + self._lines[id(ax)] = [] + sample_series = series[self.resample] + line = ax.plot(sample_series.index, sample_series.values, label=sample_series.name) + self._lines[id(ax)].append((line, series)) + self.timespan = self._timespan(*ax.get_xlim()) ax.legend() @staticmethod - def _on_xlim_changed(ax: Axes): - ax.get_xaxis().set_major_formatter(DateFormatter('%H:%M:%S')) + def _timespan(x0, x1): + return num2date(x1) - num2date(x0) + + def _on_xlim_changed(self, changed: Axes): + """ + When the xlim changes (width of the graph), we want to apply a decimation algorithm to the + dataset to speed up the visual performance of the graph. So when the graph is zoomed out + we will plot only one in 20 data points, and as the graph is zoomed we will lower the decimation + factor to zero. + Parameters + ---------- + changed + + Returns + ------- + + """ + # print("Xlim changed for ax: {}".format(ax)) + # TODO: Probably move this logic into its own function(s) + delta = self._timespan(*changed.get_xlim()) + if self.timespan: + ratio = delta/self.timespan * 100 + else: + ratio = 100 + + if 50 < ratio: + resample = slice(None, None, 20) + elif 10 < ratio <= 50: + resample = slice(None, None, 10) + else: + resample = slice(None, None, None) + if resample == self.resample: + return + + self.resample = resample + + for ax in self._axes: + if self._lines.get(id(ax), None) is not None: + # print(self._lines[id(ax)]) + for line, series in self._lines[id(ax)]: + print("xshape: {}".format(series.shape)) + r_series = series[self.resample] + print("Resample shape: {}".format(r_series.shape)) + line[0].set_ydata(r_series.values) + line[0].set_xdata(r_series.index) + ax.draw_artist(line[0]) + print("Resampling to: {}".format(self.resample)) + ax.relim() + self.figure.canvas.draw() + # ax.get_xaxis().set_major_formatter(DateFormatter('%H:%M:%S')) def get_toolbar(self, parent=None) -> QtWidgets.QToolBar: """ diff --git a/dgp/lib/project.py b/dgp/lib/project.py index c9568fd..cb1c207 100644 --- a/dgp/lib/project.py +++ b/dgp/lib/project.py @@ -312,6 +312,7 @@ def gps(self): def gps(self, value): if self._gpsdata_uid: self.log.warning('GPS Data File already exists, overwriting with new value.') + self._gpsdata = None self._gpsdata_uid = value @property @@ -344,6 +345,7 @@ def gravity(self): def gravity(self, value): if self._gravdata_uid: self.log.warning('Gravity Data File already exists, overwriting with new value.') + self._gravdata = None self._gravdata_uid = value @property From 411dcbe02a9ab964ea87e5db1d17744bd35c1d6d Mon Sep 17 00:00:00 2001 From: Zac Brady Date: Tue, 19 Sep 2017 15:07:21 -0600 Subject: [PATCH 008/236] Feature/eotvos (#24) * Fixed and tested Eotvos function. Tests are successful on the limited set of data, need to test fully on a larger dataset and results generated using Daniel's MATLAB routines. * CLN: Code refactoring and clean up in eotvos code. * TST: Update test_eotvos and tested locally with full data file. Renamed test files for test_eotvos. Eotvos function was tested locally against a data/result set generated with MATLAB (~200k lines), a smaller sample will be generated and uploaded later as the full dataset is unwieldly to run unittests against, and the file size is inconveniently large. --- dgp/lib/eotvos.py | 177 +++++++++++++--------- tests/__init__.py | 3 + tests/sample_data/eotvos_short_input.txt | 101 ++++++++++++ tests/sample_data/eotvos_short_result.csv | 101 ++++++++++++ tests/test_eotvos.py | 42 ++++- 5 files changed, 349 insertions(+), 75 deletions(-) create mode 100644 tests/sample_data/eotvos_short_input.txt create mode 100644 tests/sample_data/eotvos_short_result.csv diff --git a/dgp/lib/eotvos.py b/dgp/lib/eotvos.py index b6ab49e..9fec301 100644 --- a/dgp/lib/eotvos.py +++ b/dgp/lib/eotvos.py @@ -1,10 +1,12 @@ # coding: utf-8 +# This file is part of DynamicGravityProcessor (https://github.com/DynamicGravitySystems/DGP). +# License is Apache v2 import numpy as np from numpy import array -def derivative(y: array, datarate, n=None): +def derivative(y: array, datarate, edge_order=None): """ Based on Matlab function 'd' Created by Sandra Martinka, August 2001 Function to numerically estimate the nth time derivative of y @@ -13,98 +15,124 @@ def derivative(y: array, datarate, n=None): :param y: Array input :param datarate: Scalar data sampling rate in Hz - :param n: nth time derivative 1, 2 or None. If None return tuple of first and second order time derivatives + :param edge_order: nth time derivative 1, 2 or None. If None return tuple of first and second order time derivatives :return: nth time derivative of y """ - if n is None: + if edge_order is None: d1 = derivative(y, 1, datarate) d2 = derivative(y, 2, datarate) return d1, d2 - if n == 1: - dy = (y[3:] - y[1:-2]) * (datarate / 2) + if edge_order == 1: + dy = (y[2:] - y[0:-2]) * (datarate / 2) return dy - elif n == 2: - dy = ((y[1:-2] - 2 * y[2:-1]) + y[3:]) * (np.power(datarate, 2)) + elif edge_order == 2: + dy = ((y[0:-2] - 2 * y[1:-1]) + y[2:]) * (np.power(datarate, 2)) return dy else: return ValueError('Invalid value for parameter n {1 or 2}') -# TODO: Need sample input to test -def calc_eotvos(lat: array, lon: array, ht: array, datarate: float, a=None, ecc=None): +def calc_eotvos(lat: array, lon: array, ht: array, datarate: float, derivation_func=np.gradient, + **kwargs): """ - Based on Matlab function 'calc_eotvos_full Created by Sandra Preaux, NGS, NOAA August 24, 2009 - - Usage: - + calc_eotvos: Calculate Eotvos Gravity Corrections - References: - Harlan 1968, "Eotvos Corrections for Airborne Gravimetry" JGR 73,n14 + Based on Matlab function 'calc_eotvos_full Created by Sandra Preaux, NGS, NOAA August 24, 2009 - :param lat: Array geodetic latitude in decimal degrees - :param lon: Array longitude in decimal degrees - :param ht: ellipsoidal height in meters - :param datarate: Scalar data rate in Hz - :param a: Scalar semi-major axis of ellipsoid in meters - :param ecc: Scalar eccentricity of ellipsoid - :return: Tuple Eotvos values in mgals - (rdoubledot, angular acceleration of the ref frame, coriolis, centrifugal, centrifugal acceleration of earth) + References + ---------- + Harlan 1968, "Eotvos Corrections for Airborne Gravimetry" JGR 73,n14 + + Parameters + ---------- + lat : Array + Array of geodetic latitude in decimal degrees + lon : Array + Array of longitude in decimal degrees + ht : Array + Array of ellipsoidal height in meters + datarate : Float (Scalar) + Scalar data rate in Hz + derivation_func : Callable (Array, Scalar, Int) + Callable function used to calculate first and second order time derivatives. + kwargs + a : float + Specify semi-major axis + ecc : float + Eccentricity + + Returns + ------- + 6-Tuple (Array, ...) + Eotvos values in mgals + Tuple(E: Array, rdoubledot, angular acc of ref frame, coriolis, centrifugal, centrifugal acc of earth) """ + # eotvos.derivative function trims the ends of the input by 1, so we need to apply bound to + # some arrays + if derivation_func is not np.gradient: + bounds = slice(1, -1) + else: + bounds = slice(None, None, None) + # Constants - # TODO: Allow a and ecc to be specified in kwargs - a = 6378137.0 # Default semi-major axis + # a = 6378137.0 # Default semi-major axis + a = kwargs.get('a', 6378137.0) # Default semi-major axis b = 6356752.3142 # Default semi-minor axis - ecc = (a - b) / a # Eccentricity (eq 5 Harlan) + ecc = kwargs.get('ecc', (a - b) / a) # Eccentricity + We = 0.00007292115 # sidereal rotation rate, radians/sec mps2mgal = 100000 # m/s/s to mgal # Convert lat/lon in degrees to radians - rad_lat = np.deg2rad(lat) - rad_lon = np.deg2rad(lon) + lat = np.deg2rad(lat) + lon = np.deg2rad(lon) - dlat, ddlat = derivative(rad_lat, datarate) - dlon, ddlon = derivative(rad_lon, datarate) - dht, ddht = derivative(ht, datarate) + dlat = derivation_func(lat, datarate, edge_order=1) + ddlat = derivation_func(lat, datarate, edge_order=2) + dlon = derivation_func(lon, datarate, edge_order=1) + ddlon = derivation_func(lon, datarate, edge_order=2) + dht = derivation_func(ht, datarate, edge_order=1) + ddht = derivation_func(ht, datarate, edge_order=2) # Calculate sin(lat), cos(lat), sin(2*lat), and cos(2*lat) - # Beware MATLAB uses an array index starting with one (1), whereas python uses zero indexed arrays - sin_lat = np.sin(rad_lat[1:-1]) - cos_lat = np.cos(rad_lat[1:-1]) - sin_2lat = np.sin(2 * rad_lat[1:-1]) - cos_2lat = np.cos(2 * rad_lat[1:-1]) + sin_lat = np.sin(lat[bounds]) + cos_lat = np.cos(lat[bounds]) + sin_2lat = np.sin(2.0 * lat[bounds]) + cos_2lat = np.cos(2.0 * lat[bounds]) # Calculate the r' and its derivatives - r_prime = a * (1-ecc * sin_lat * sin_lat) - dr_prime = a * dlat * ecc * sin_2lat - ddr_prime = None + r_prime = a * (1.0-ecc * sin_lat * sin_lat) + dr_prime = -a * dlat * ecc * sin_2lat + ddr_prime = -a * ddlat * ecc * sin_2lat - 2.0 * a * dlat * dlat * ecc * cos_2lat # Calculate the deviation from the normal and its derivatives D = np.arctan(ecc * sin_2lat) dD = 2.0 * dlat * ecc * cos_2lat ddD = 2.0 * ddlat * ecc * cos_2lat - 4.0 * dlat * dlat * ecc * sin_2lat + # Calculate this value once (used many times) + sinD = np.sin(D) + cosD = np.cos(D) # Calculate r and its derivatives r = array([ - -r_prime * np.sin(D), - np.zeros(r_prime.shape), - -r_prime * np.cos(D)-ht[1:-1] + -r_prime * sinD, + np.zeros(r_prime.size), + -r_prime * cosD-ht[bounds] ]) rdot = array([ - -dr_prime * np.sin(D) - r_prime * dD * np.cos(D), - np.zeros(r_prime.shape), - -dr_prime * np.cos(D) + r_prime * dD * np.sin(D) - dht + (-dr_prime * sinD - r_prime * dD * cosD), + np.zeros(r_prime.size), + (-dr_prime * cosD + r_prime * dD * sinD - dht) ]) - # ci=(-ddrp.*sin(D)-2.0.*drp.*dD.*cos(D)-rp.*(ddD.*cos(D)-dD.*dD.*sin(D))); - ci = (-ddr_prime * np.sin(D) - 2.0 * dr_prime * dD * np.cos(D) - r_prime * - (ddD * np.cos(D) - dD * dD * np.sin(D))) - # ck = (-ddrp. * cos(D) + 2.0. * drp. * dD. * sin(D) + rp. * (ddD. * sin(D) + dD. * dD. * cos(D)) - ddht); - ck = (-ddr_prime * np.cos(D) + 2.0 * dr_prime * dD * np.sin(D) + r_prime * - (ddD * np.sin(D) + dD * dD * np.cos(D)) - ddht) + ci = (-ddr_prime * np.sin(D) - 2.0 * dr_prime * dD * cosD - r_prime * + (ddD * cosD - dD * dD * sinD)) + ck = (-ddr_prime * np.cos(D) + 2.0 * dr_prime * dD * sinD + r_prime * + (ddD * sinD + dD * dD * cosD) - ddht) r2dot = array([ ci, - np.zeros(ci.shape), + np.zeros(ci.size), ck ]) @@ -112,43 +140,44 @@ def calc_eotvos(lat: array, lon: array, ht: array, datarate: float, a=None, ecc= w = array([ (dlon + We) * cos_lat, -dlat, - -(dlon + We) * sin_lat + (-(dlon + We)) * sin_lat ]) wdot = array([ dlon * cos_lat - (dlon + We) * dlat * sin_lat, -ddlat, (-ddlon * sin_lat - (dlon + We) * dlat * cos_lat) ]) - w2_x_rdot = np.cross(2.0 * w, rdot) - wdot_x_r = np.cross(wdot, r) - w_x_r = np.cross(w, r) - wxwxr = np.cross(w, w_x_r) - - # Calculate wexwexre (that is the centrifugal acceleration due to the earth - re = array([ - -r_prime * np.sin(D), - np.zeros(r_prime.shape), - -r_prime * np.cos(D) - ]) + w2_x_rdot = np.cross(2.0 * w, rdot, axis=0) + wdot_x_r = np.cross(wdot, r, axis=0) + w_x_r = np.cross(w, r, axis=0) + wxwxr = np.cross(w, w_x_r, axis=0) + + # Calculate wexwexre (which is the centrifugal acceleration due to the earth) + # not currently used: + # re = array([ + # -r_prime * sinD, + # np.zeros(r_prime.size), + # -r_prime * cosD + # ]) we = array([ We * cos_lat, np.zeros(sin_lat.shape), -We * sin_lat ]) - we_x_re = np.cross(we, re) - wexwexre = np.cross(we, we_x_re) - we_x_r = np.cross(we, r) - wexwexr = np.cross(we, we_x_r) + # wexre = np.cross(we, re, axis=0) # not currently used + # wexwexre = np.cross(we, wexre, axis=0) # not currently used + wexr = np.cross(we, r, axis=0) + wexwexr = np.cross(we, wexr, axis=0) # Calculate total acceleration for the aircraft acc = r2dot + w2_x_rdot + wdot_x_r + wxwxr # Eotvos correction is the vertical component of the total acceleration of # the aircraft - the centrifugal acceleration of the earth, converted to mgal - E = (acc[3,:] - wexwexr[3,:]) * mps2mgal - # TODO: Pad the start/end due to loss during derivative computation - return E + E = (acc[2] - wexwexr[2]) * mps2mgal + if derivation_func is not np.gradient: + E = np.pad(E, (1, 1), 'edge') - # Final Return 5-Tuple - eotvos = (r2dot, w2_x_rdot, wdot_x_r, wxwxr, wexwexr) - return eotvos + # Return Eotvos corrections + return E + # return E, r2dot, w2_x_rdot, wdot_x_r, wxwxr, wexwexr diff --git a/tests/__init__.py b/tests/__init__.py index e69de29..f11a9e7 100644 --- a/tests/__init__.py +++ b/tests/__init__.py @@ -0,0 +1,3 @@ +import pathlib + +sample_dir = pathlib.Path('tests/sample_data') diff --git a/tests/sample_data/eotvos_short_input.txt b/tests/sample_data/eotvos_short_input.txt new file mode 100644 index 0000000..0ee6bd4 --- /dev/null +++ b/tests/sample_data/eotvos_short_input.txt @@ -0,0 +1,101 @@ +GPS Date,GPS Time, Lattitude, Longitude, Orthometric Heigth,Elipsoidal Height,Num of satelites,PDOP + 9/14/2017,15:38:39.00, 39.9148595446,-105.057988972, 1615.999, 1599.197, 0, 0.00 + 9/14/2017,15:38:39.10, 39.9148599142,-105.057988301, 1615.991, 1599.190, 0, 0.00 + 9/14/2017,15:38:39.20, 39.9148607753,-105.057986737, 1615.973, 1599.172, 0, 0.00 + 9/14/2017,15:38:39.30, 39.9148614843,-105.057985449, 1615.958, 1599.157, 0, 0.00 + 9/14/2017,15:38:39.40, 39.9148617500,-105.057984967, 1615.953, 1599.152, 0, 0.00 + 9/14/2017,15:38:39.50, 39.9148617748,-105.057984922, 1615.953, 1599.151, 0, 0.00 + 9/14/2017,15:38:39.60, 39.9148617748,-105.057984922, 1615.953, 1599.151, 0, 0.00 + 9/14/2017,15:38:39.70, 39.9148617748,-105.057984922, 1615.953, 1599.151, 0, 0.00 + 9/14/2017,15:38:39.80, 39.9148618286,-105.057984811, 1615.952, 1599.151, 0, 0.00 + 9/14/2017,15:38:39.90, 39.9148619529,-105.057984553, 1615.951, 1599.150, 0, 0.00 + 9/14/2017,15:38:40.00, 39.9148620900,-105.057984268, 1615.951, 1599.149, 0, 0.00 + 9/14/2017,15:38:40.10, 39.9148622338,-105.057983967, 1615.950, 1599.148, 0, 0.00 + 9/14/2017,15:38:40.20, 39.9148623765,-105.057983668, 1615.949, 1599.148, 0, 0.00 + 9/14/2017,15:38:40.30, 39.9148624276,-105.057983561, 1615.949, 1599.147, 0, 0.00 + 9/14/2017,15:38:40.40, 39.9148624276,-105.057983561, 1615.949, 1599.147, 0, 0.00 + 9/14/2017,15:38:40.50, 39.9148624276,-105.057983561, 1615.949, 1599.147, 0, 0.00 + 9/14/2017,15:38:40.60, 39.9148624276,-105.057983561, 1615.949, 1599.147, 0, 0.00 + 9/14/2017,15:38:40.70, 39.9148624277,-105.057983561, 1615.949, 1599.147, 0, 0.00 + 9/14/2017,15:38:40.80, 39.9148624277,-105.057983561, 1615.949, 1599.147, 0, 0.00 + 9/14/2017,15:38:40.90, 39.9148624277,-105.057983561, 1615.949, 1599.147, 0, 0.00 + 9/14/2017,15:38:41.00, 39.9148624277,-105.057983561, 1615.949, 1599.147, 0, 0.00 + 9/14/2017,15:38:41.10, 39.9148624277,-105.057983561, 1615.949, 1599.147, 0, 0.00 + 9/14/2017,15:38:41.20, 39.9148624276,-105.057983561, 1615.949, 1599.147, 0, 0.00 + 9/14/2017,15:38:41.30, 39.9148624276,-105.057983561, 1615.949, 1599.147, 0, 0.00 + 9/14/2017,15:38:41.40, 39.9148624276,-105.057983561, 1615.949, 1599.147, 0, 0.00 + 9/14/2017,15:38:41.50, 39.9148624276,-105.057983561, 1615.949, 1599.147, 0, 0.00 + 9/14/2017,15:38:41.60, 39.9148624276,-105.057983561, 1615.949, 1599.147, 0, 0.00 + 9/14/2017,15:38:41.70, 39.9148624276,-105.057983561, 1615.949, 1599.147, 0, 0.00 + 9/14/2017,15:38:41.80, 39.9148624277,-105.057983561, 1615.949, 1599.147, 0, 0.00 + 9/14/2017,15:38:41.90, 39.9148624277,-105.057983561, 1615.949, 1599.147, 0, 0.00 + 9/14/2017,15:38:42.00, 39.9148624276,-105.057983561, 1615.949, 1599.147, 0, 0.00 + 9/14/2017,15:38:42.10, 39.9148624276,-105.057983561, 1615.949, 1599.147, 0, 0.00 + 9/14/2017,15:38:42.20, 39.9148624276,-105.057983561, 1615.949, 1599.147, 0, 0.00 + 9/14/2017,15:38:42.30, 39.9148624275,-105.057983561, 1615.949, 1599.147, 0, 0.00 + 9/14/2017,15:38:42.40, 39.9148624275,-105.057983561, 1615.949, 1599.147, 0, 0.00 + 9/14/2017,15:38:42.50, 39.9148624275,-105.057983561, 1615.949, 1599.147, 0, 0.00 + 9/14/2017,15:38:42.60, 39.9148624275,-105.057983561, 1615.949, 1599.147, 0, 0.00 + 9/14/2017,15:38:42.70, 39.9148624276,-105.057983561, 1615.949, 1599.147, 0, 0.00 + 9/14/2017,15:38:42.80, 39.9148624276,-105.057983561, 1615.949, 1599.147, 0, 0.00 + 9/14/2017,15:38:42.90, 39.9148624276,-105.057983561, 1615.949, 1599.147, 0, 0.00 + 9/14/2017,15:38:43.00, 39.9148624276,-105.057983561, 1615.949, 1599.147, 0, 0.00 + 9/14/2017,15:38:43.10, 39.9148624276,-105.057983561, 1615.949, 1599.147, 0, 0.00 + 9/14/2017,15:38:43.20, 39.9148624275,-105.057983561, 1615.949, 1599.147, 0, 0.00 + 9/14/2017,15:38:43.30, 39.9148624275,-105.057983561, 1615.949, 1599.147, 0, 0.00 + 9/14/2017,15:38:43.40, 39.9148624275,-105.057983561, 1615.949, 1599.147, 0, 0.00 + 9/14/2017,15:38:43.50, 39.9148624275,-105.057983561, 1615.949, 1599.147, 0, 0.00 + 9/14/2017,15:38:43.60, 39.9148624275,-105.057983561, 1615.949, 1599.147, 0, 0.00 + 9/14/2017,15:38:43.70, 39.9148624275,-105.057983561, 1615.949, 1599.147, 0, 0.00 + 9/14/2017,15:38:43.80, 39.9148624275,-105.057983561, 1615.949, 1599.147, 0, 0.00 + 9/14/2017,15:38:43.90, 39.9148624276,-105.057983561, 1615.949, 1599.147, 0, 0.00 + 9/14/2017,15:38:44.00, 39.9148624275,-105.057983561, 1615.949, 1599.147, 0, 0.00 + 9/14/2017,15:38:44.10, 39.9148624275,-105.057983561, 1615.949, 1599.147, 0, 0.00 + 9/14/2017,15:38:44.20, 39.9148624275,-105.057983561, 1615.949, 1599.147, 0, 0.00 + 9/14/2017,15:38:44.30, 39.9148624274,-105.057983561, 1615.949, 1599.147, 0, 0.00 + 9/14/2017,15:38:44.40, 39.9148624274,-105.057983561, 1615.949, 1599.147, 0, 0.00 + 9/14/2017,15:38:44.50, 39.9148624274,-105.057983561, 1615.949, 1599.147, 0, 0.00 + 9/14/2017,15:38:44.60, 39.9148624274,-105.057983561, 1615.949, 1599.147, 0, 0.00 + 9/14/2017,15:38:44.70, 39.9148624275,-105.057983561, 1615.949, 1599.147, 0, 0.00 + 9/14/2017,15:38:44.80, 39.9148624275,-105.057983561, 1615.949, 1599.147, 0, 0.00 + 9/14/2017,15:38:44.90, 39.9148624275,-105.057983561, 1615.949, 1599.147, 0, 0.00 + 9/14/2017,15:38:45.00, 39.9148624275,-105.057983561, 1615.949, 1599.147, 0, 0.00 + 9/14/2017,15:38:45.10, 39.9148624274,-105.057983561, 1615.949, 1599.147, 0, 0.00 + 9/14/2017,15:38:45.20, 39.9148624274,-105.057983561, 1615.949, 1599.147, 0, 0.00 + 9/14/2017,15:38:45.30, 39.9148624274,-105.057983561, 1615.949, 1599.147, 0, 0.00 + 9/14/2017,15:38:45.40, 39.9148624273,-105.057983561, 1615.949, 1599.147, 0, 0.00 + 9/14/2017,15:38:45.50, 39.9148624274,-105.057983561, 1615.949, 1599.147, 0, 0.00 + 9/14/2017,15:38:45.60, 39.9148624274,-105.057983561, 1615.949, 1599.147, 0, 0.00 + 9/14/2017,15:38:45.70, 39.9148624274,-105.057983561, 1615.949, 1599.147, 0, 0.00 + 9/14/2017,15:38:45.80, 39.9148624274,-105.057983561, 1615.949, 1599.147, 0, 0.00 + 9/14/2017,15:38:45.90, 39.9148624274,-105.057983561, 1615.949, 1599.147, 0, 0.00 + 9/14/2017,15:38:46.00, 39.9148624274,-105.057983561, 1615.949, 1599.147, 0, 0.00 + 9/14/2017,15:38:46.10, 39.9148624274,-105.057983561, 1615.949, 1599.147, 0, 0.00 + 9/14/2017,15:38:46.20, 39.9148624273,-105.057983561, 1615.949, 1599.147, 0, 0.00 + 9/14/2017,15:38:46.30, 39.9148624273,-105.057983561, 1615.949, 1599.147, 0, 0.00 + 9/14/2017,15:38:46.40, 39.9148624273,-105.057983561, 1615.949, 1599.147, 0, 0.00 + 9/14/2017,15:38:46.50, 39.9148624273,-105.057983561, 1615.949, 1599.147, 0, 0.00 + 9/14/2017,15:38:46.60, 39.9148624273,-105.057983561, 1615.949, 1599.147, 0, 0.00 + 9/14/2017,15:38:46.70, 39.9148624274,-105.057983561, 1615.949, 1599.147, 0, 0.00 + 9/14/2017,15:38:46.80, 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39.9148624273,-105.057983561, 1615.949, 1599.147, 0, 0.00 + 9/14/2017,15:38:48.10, 39.9148624273,-105.057983561, 1615.949, 1599.147, 0, 0.00 + 9/14/2017,15:38:48.20, 39.9148624272,-105.057983561, 1615.949, 1599.147, 0, 0.00 + 9/14/2017,15:38:48.30, 39.9148624272,-105.057983561, 1615.949, 1599.147, 0, 0.00 + 9/14/2017,15:38:48.40, 39.9148624272,-105.057983561, 1615.949, 1599.147, 0, 0.00 + 9/14/2017,15:38:48.50, 39.9148624272,-105.057983561, 1615.949, 1599.147, 0, 0.00 + 9/14/2017,15:38:48.60, 39.9148624272,-105.057983561, 1615.949, 1599.147, 0, 0.00 + 9/14/2017,15:38:48.70, 39.9148624272,-105.057983561, 1615.949, 1599.147, 0, 0.00 + 9/14/2017,15:38:48.80, 39.9148624273,-105.057983561, 1615.949, 1599.147, 0, 0.00 + 9/14/2017,15:38:48.90, 39.9148624273,-105.057983561, 1615.949, 1599.147, 0, 0.00 diff --git a/tests/sample_data/eotvos_short_result.csv b/tests/sample_data/eotvos_short_result.csv new file mode 100644 index 0000000..d3ab8d7 --- /dev/null +++ b/tests/sample_data/eotvos_short_result.csv @@ -0,0 +1,101 @@ +Longitude,latitude,Elipsoidal h,Eotvos_full +-105.057989,39.91485954,1599.197,110015.3395 +-105.0579883,39.91485991,1599.19,110015.3395 +-105.0579867,39.91486078,1599.172,-29987.75511 +-105.0579855,39.91486148,1599.157,-99995.6938 +-105.057985,39.91486175,1599.152,-39999.7461 +-105.0579849,39.91486177,1599.151,-10000.01824 +-105.0579849,39.91486177,1599.151,0 +-105.0579849,39.91486177,1599.151,1.03750397 +-105.0579848,39.91486183,1599.151,10002.42929 +-105.0579846,39.91486195,1599.15,2.71896098 +-105.0579843,39.91486209,1599.149,2.86739311 +-105.057984,39.91486223,1599.148,-9997.139013 +-105.0579837,39.91486238,1599.148,10001.08023 +-105.0579836,39.91486243,1599.147,-9999.969253 +-105.0579836,39.91486243,1599.147,0 +-105.0579836,39.91486243,1599.147,0 +-105.0579836,39.91486243,1599.147,0.00094152 +-105.0579836,39.91486243,1599.147,-0.00094152 +-105.0579836,39.91486243,1599.147,0 +-105.0579836,39.91486243,1599.147,0 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+-105.0579836,39.91486243,1599.147,0 +-105.0579836,39.91486243,1599.147,0 +-105.0579836,39.91486243,1599.147,0 +-105.0579836,39.91486243,1599.147,0 +-105.0579836,39.91486243,1599.147,0 +-105.0579836,39.91486243,1599.147,0.00094152 +-105.0579836,39.91486243,1599.147,-0.00188303 +-105.0579836,39.91486243,1599.147,0.00094152 +-105.0579836,39.91486243,1599.147,0 +-105.0579836,39.91486243,1599.147,-0.00094146 +-105.0579836,39.91486243,1599.147,0.00094146 +-105.0579836,39.91486243,1599.147,0 +-105.0579836,39.91486243,1599.147,0 +-105.0579836,39.91486243,1599.147,0.00094146 +-105.0579836,39.91486243,1599.147,-0.00094146 +-105.0579836,39.91486243,1599.147,0 +-105.0579836,39.91486243,1599.147,0 +-105.0579836,39.91486243,1599.147,-0.00094146 +-105.0579836,39.91486243,1599.147,0.00094146 +-105.0579836,39.91486243,1599.147,0 +-105.0579836,39.91486243,1599.147,-0.00094146 +-105.0579836,39.91486243,1599.147,0.00188291 +-105.0579836,39.91486243,1599.147,-0.00094146 +-105.0579836,39.91486243,1599.147,0 +-105.0579836,39.91486243,1599.147,0 +-105.0579836,39.91486243,1599.147,0 +-105.0579836,39.91486243,1599.147,0 +-105.0579836,39.91486243,1599.147,0 +-105.0579836,39.91486243,1599.147,-0.00094146 +-105.0579836,39.91486243,1599.147,0.00094146 +-105.0579836,39.91486243,1599.147,0 +-105.0579836,39.91486243,1599.147,0 +-105.0579836,39.91486243,1599.147,0 +-105.0579836,39.91486243,1599.147,0.00094146 +-105.0579836,39.91486243,1599.147,-0.00094146 +-105.0579836,39.91486243,1599.147,0 +-105.0579836,39.91486243,1599.147,0 +-105.0579836,39.91486243,1599.147,-0.00094146 +-105.0579836,39.91486243,1599.147,0.00094146 +-105.0579836,39.91486243,1599.147,0 +-105.0579836,39.91486243,1599.147,-0.00094152 +-105.0579836,39.91486243,1599.147,0.00094152 +-105.0579836,39.91486243,1599.147,0.00094152 +-105.0579836,39.91486243,1599.147,-0.00094152 +-105.0579836,39.91486243,1599.147,0 +-105.0579836,39.91486243,1599.147,0 +-105.0579836,39.91486243,1599.147,0 +-105.0579836,39.91486243,1599.147,0 +-105.0579836,39.91486243,1599.147,-0.00094152 +-105.0579836,39.91486243,1599.147,0.00094152 +-105.0579836,39.91486243,1599.147,0 +-105.0579836,39.91486243,1599.147,0 +-105.0579836,39.91486243,1599.147,0 +-105.0579836,39.91486243,1599.147,0 +-105.0579836,39.91486243,1599.147,0.00094152 +-105.0579836,39.91486243,1599.147,-0.00094152 +-105.0579836,39.91486243,1599.147,0 diff --git a/tests/test_eotvos.py b/tests/test_eotvos.py index 6f48bdd..0d6d6d8 100644 --- a/tests/test_eotvos.py +++ b/tests/test_eotvos.py @@ -3,14 +3,54 @@ import os import unittest import numpy as np +import csv from .context import dgp +from tests import sample_dir import dgp.lib.eotvos as eotvos +import dgp.lib.trajectory_ingestor as ti class TestEotvos(unittest.TestCase): + """Test Eotvos correction calculation.""" def setUp(self): pass + @unittest.skip("test_derivative not implemented.") def test_derivative(self): - pass + """Test derivation function against table of values calculated in MATLAB""" + dlat = [] + ddlat = [] + dlon = [] + ddlon = [] + dht = [] + ddht = [] + # with sample_dir.joinpath('result_derivative.csv').open() as fd: + # reader = csv.DictReader(fd) + # dlat = list(map(lambda line: dlat.append(line['dlat']), reader)) + + def test_eotvos(self): + """Test Eotvos function against corrections generated with MATLAB program.""" + # Ensure gps_fields are ordered correctly relative to test file + gps_fields = ['mdy', 'hms', 'lat', 'long', 'ortho_ht', 'ell_ht', 'num_stats', 'pdop'] + data = ti.import_trajectory('tests/sample_data/eotvos_short_input.txt', columns=gps_fields, skiprows=1, + timeformat='hms') + + result_eotvos = [] + with sample_dir.joinpath('eotvos_short_result.csv').open() as fd: + test_data = csv.DictReader(fd) + # print(test_data.fieldnames) + for line in test_data: + result_eotvos.append(float(line['Eotvos_full'])) + lat = data['lat'].values + lon = data['long'].values + ht = data['ell_ht'].values + rate = 10 + + eotvos_a = eotvos.calc_eotvos(lat, lon, ht, rate, derivation_func=eotvos.derivative) + for i, value in enumerate(eotvos_a): + try: + self.assertAlmostEqual(value, result_eotvos[i], places=2) + except AssertionError: + print("Invalid assertion at data line: {}".format(i)) + raise AssertionError From 96fd4c9efb02fd4b6b54137a6363eb213e7ea400 Mon Sep 17 00:00:00 2001 From: bradyzp Date: Tue, 19 Sep 2017 16:44:55 -0600 Subject: [PATCH 009/236] ENH: Debugging implementation of eotvos to plot GPS --- dgp/gui/dialogs.py | 26 +++++++++++++--- dgp/gui/loader.py | 2 +- dgp/gui/main.py | 36 +++++++++++----------- dgp/gui/ui/add_flight_dialog.ui | 17 ++++++++--- dgp/gui/ui/main_window.ui | 2 +- dgp/gui/ui/project_dialog.ui | 21 ++++++++++++- dgp/gui/ui/splash_screen.ui | 53 +++++++++++++++++++++++++++++---- dgp/lib/eotvos.py | 3 ++ dgp/lib/project.py | 17 ++++++++++- tests/test_eotvos.py | 1 + 10 files changed, 144 insertions(+), 34 deletions(-) diff --git a/dgp/gui/dialogs.py b/dgp/gui/dialogs.py index 5d01924..5a3047a 100644 --- a/dgp/gui/dialogs.py +++ b/dgp/gui/dialogs.py @@ -1,6 +1,7 @@ # coding: utf-8 import os +import logging import functools import datetime import pathlib @@ -11,6 +12,7 @@ import dgp.lib.project as prj from dgp.gui.models import TableModel +from dgp.gui.utils import ConsoleHandler, LOG_COLOR_MAP data_dialog, _ = loadUiType('dgp/gui/ui/data_import_dialog.ui') @@ -165,8 +167,17 @@ class CreateProject(QtWidgets.QDialog, project_dialog): def __init__(self, *args): super().__init__(*args) self.setupUi(self) + + # TODO: Abstract this to a base dialog class so that it can be easily implemented in all dialogs + self.log = logging.getLogger(__name__) + error_handler = ConsoleHandler(self.write_error) + error_handler.setFormatter(logging.Formatter('%(levelname)s: %(message)s')) + error_handler.setLevel(logging.DEBUG) + self.log.addHandler(error_handler) + self.prj_create.clicked.connect(self.create_project) self.prj_browse.clicked.connect(self.select_dir) + self.prj_desktop.clicked.connect(self._select_desktop) self._project = None @@ -177,6 +188,10 @@ def __init__(self, *args): dgs_marine = Qt.QListWidgetItem(Qt.QIcon(':images/assets/boat_icon.png'), 'DGS Marine', self.prj_type_list) dgs_marine.setData(QtCore.Qt.UserRole, 'dgs_marine') + def write_error(self, msg, level=None) -> None: + self.label_required.setText(msg) + self.label_required.setStyleSheet('color: {}'.format(LOG_COLOR_MAP[level])) + def create_project(self): """ Called upon 'Create' button push, do some basic validation of fields then @@ -193,11 +208,10 @@ def create_project(self): else: self.__getattribute__(required_fields[attr]).setStyleSheet('color: black') - if not os.path.isdir(self.prj_dir.text()): + if not pathlib.Path(self.prj_dir.text()).exists(): invalid_input = True self.label_dir.setStyleSheet('color: red') - self.label_required.setText("Invalid Directory") - self.label_required.setStyleSheet('color: red') + self.log.error("Invalid Directory") if invalid_input: return @@ -210,11 +224,15 @@ def create_project(self): self._project = prj.AirborneProject(path, name, self.prj_description.toPlainText().rstrip()) else: - self.label_required.setText('Invalid project type (Not Implemented)') + self.log.error("Invalid Project Type (Not Implemented)") return self.accept() + def _select_desktop(self): + path = pathlib.Path().home().joinpath('Desktop') + self.prj_dir.setText(str(path)) + def select_dir(self): path = QtWidgets.QFileDialog.getExistingDirectory(self, "Select Project Parent Directory") if path: diff --git a/dgp/gui/loader.py b/dgp/gui/loader.py index 3f1317a..8acf2cf 100644 --- a/dgp/gui/loader.py +++ b/dgp/gui/loader.py @@ -24,7 +24,7 @@ def __init__(self, path: pathlib.Path, datatype: str, flight_id: str, parent=Non def run(self): if self._dtype == 'gps': - fields = ['mdy', 'hms', 'lat', 'long', 'ell_ht', 'ortho_ht', 'num_sats', 'pdop'] + fields = ['mdy', 'hms', 'lat', 'long', 'ortho_ht', 'ell_ht', 'num_sats', 'pdop'] df = self._functor(self._path, columns=fields, skiprows=1, timeformat='hms') else: df = self._functor(self._path) diff --git a/dgp/gui/main.py b/dgp/gui/main.py index eb8c51a..950a8d3 100644 --- a/dgp/gui/main.py +++ b/dgp/gui/main.py @@ -159,7 +159,11 @@ def _init_plots(self) -> None: self.gravity_stack.addWidget(widget) gravity = flight.gravity if gravity is not None: - self.plot_gravity(plot, gravity, {0: 'gravity', 1: ['long', 'cross']}) + self.plot_time_series(plot, gravity, {0: 'gravity', 1: ['long', 'cross']}) + + # if flight.eotvos is not None: + # self.plot_time_series(plot, flight.eotvos, {2: 'eotvos'}) + self.log.debug("Initialized Flight Plot: {}".format(plot)) self.status.emit('Flight Plot {} Initialized'.format(flight.name)) self.progress.emit(i+1) @@ -310,7 +314,7 @@ def flight_changed(self, index: QtCore.QModelIndex) -> None: # so we can call this on app startup to pre-plot everything if flight.gravity is not None: if not grav_plot.plotted: - self.plot_gravity(grav_plot, flight.gravity, {0: 'gravity', 1: ['long', 'cross']}) + self.plot_time_series(grav_plot, flight.gravity, {0: 'gravity', 1: ['long', 'cross']}) if flight.gps is not None: self.log.debug("Flight has GPS Data") @@ -318,35 +322,33 @@ def flight_changed(self, index: QtCore.QModelIndex) -> None: def redraw(self, flt_id: str): plot, _ = self.flight_plots[flt_id] flt = self.project.get_flight(flt_id) # type: prj.Flight - self.plot_gravity(plot, flt.gravity, {0: 'gravity', 1: ['long', 'cross']}) + if flt.gravity is not None: + self.plot_time_series(plot, flt.gravity, {0: 'gravity', 1: ['long', 'cross']}) + # if flt.gps is not None: + # self.plot_time_series(plot, flt.eotvos, {2: 'eotvos'}) @staticmethod - def plot_gravity(plot: LineGrabPlot, data: DataFrame, fields: Dict): + def plot_time_series(plot: LineGrabPlot, data: DataFrame, fields: Dict): plot.clear() for index in fields: if isinstance(fields[index], str): series = data.get(fields[index]) # type: Series - # plot.plot(plot[index], series.index, series.values, label=series.name) plot.plot2(plot[index], series) continue for field in fields[index]: series = data.get(field) # type: Series - # plot.plot(plot[index], series.index, series.values, label=series.name) plot.plot2(plot[index], series) plot.draw() plot.plotted = True - @staticmethod - def plot_gps(plot: LineGrabPlot, data: DataFrame, fields: Dict): - pass - def progress_dialog(self, title, min=0, max=1): - prg = QtWidgets.QProgressDialog(title, "Cancel", min, max, self) - prg.setModal(True) - prg.setMinimumDuration(0) - prg.setCancelButton(None) - prg.setValue(0) - return prg + dialog = QtWidgets.QProgressDialog(title, "Cancel", min, max, self) + dialog.setWindowTitle("Loading...") + dialog.setModal(True) + dialog.setMinimumDuration(0) + dialog.setCancelButton(None) + dialog.setValue(0) + return dialog def import_data(self, path: pathlib.Path, dtype: str, flight: prj.Flight): self.log.info("Importing <{dtype}> from: Path({path}) into ".format(dtype=dtype, path=str(path), @@ -428,7 +430,7 @@ def add_flight_dialog(self) -> None: if dialog.gps: self.import_data(dialog.gps, 'gps', flight) - plot, widget = self._new_plot_widget(flight.name, rows=2) + plot, widget = self._new_plot_widget(flight.name, rows=3) self.gravity_stack.addWidget(widget) self.flight_plots[flight.uid] = plot, widget self.project_tree.refresh(curr_flightid=flight.uid) diff --git a/dgp/gui/ui/add_flight_dialog.ui b/dgp/gui/ui/add_flight_dialog.ui index 63ac114..7415ee4 100644 --- a/dgp/gui/ui/add_flight_dialog.ui +++ b/dgp/gui/ui/add_flight_dialog.ui @@ -95,7 +95,7 @@ - + Gravity Data @@ -105,7 +105,7 @@ - + @@ -142,6 +142,12 @@ 0 + + Browse + + + Browse + ... @@ -150,7 +156,7 @@ - + GPS Data @@ -160,7 +166,7 @@ - + @@ -197,6 +203,9 @@ 0 + + Browse + ... diff --git a/dgp/gui/ui/main_window.ui b/dgp/gui/ui/main_window.ui index 39df0a7..7f83268 100644 --- a/dgp/gui/ui/main_window.ui +++ b/dgp/gui/ui/main_window.ui @@ -49,7 +49,7 @@ - 1 + 0 diff --git a/dgp/gui/ui/project_dialog.ui b/dgp/gui/ui/project_dialog.ui index bb882cb..05033e4 100644 --- a/dgp/gui/ui/project_dialog.ui +++ b/dgp/gui/ui/project_dialog.ui @@ -123,11 +123,28 @@ 16777215 + + Browse + ... + + + + Select Desktop Folder + + + + + + + :/images/assets/folder_open.png:/images/assets/folder_open.png + + + @@ -257,7 +274,9 @@ prj_create prj_type_list - + + + prj_cancel diff --git a/dgp/gui/ui/splash_screen.ui b/dgp/gui/ui/splash_screen.ui index 03d4c66..b045b14 100644 --- a/dgp/gui/ui/splash_screen.ui +++ b/dgp/gui/ui/splash_screen.ui @@ -6,8 +6,8 @@ 0 0 - 600 - 500 + 604 + 561 @@ -52,10 +52,53 @@ - - - Open Recent Project: + + + + + + true + + false + + + + 0 + + + 0 + + + 0 + + + + + + 2 + 0 + + + + Open Recent Project: + + + + + + + + 100 + 0 + + + + Clear Recent + + + + diff --git a/dgp/lib/eotvos.py b/dgp/lib/eotvos.py index 9fec301..a6810aa 100644 --- a/dgp/lib/eotvos.py +++ b/dgp/lib/eotvos.py @@ -147,6 +147,8 @@ def calc_eotvos(lat: array, lon: array, ht: array, datarate: float, derivation_f -ddlat, (-ddlon * sin_lat - (dlon + We) * dlat * cos_lat) ]) + print("Shape w: {}".format(w.shape)) + print("Shape rdot: {}".format(rdot.shape)) w2_x_rdot = np.cross(2.0 * w, rdot, axis=0) wdot_x_r = np.cross(wdot, r, axis=0) w_x_r = np.cross(w, r, axis=0) @@ -176,6 +178,7 @@ def calc_eotvos(lat: array, lon: array, ht: array, datarate: float, derivation_f # the aircraft - the centrifugal acceleration of the earth, converted to mgal E = (acc[2] - wexwexr[2]) * mps2mgal if derivation_func is not np.gradient: + print("Padding correction") E = np.pad(E, (1, 1), 'edge') # Return Eotvos corrections diff --git a/dgp/lib/project.py b/dgp/lib/project.py index cb1c207..0b1b1a5 100644 --- a/dgp/lib/project.py +++ b/dgp/lib/project.py @@ -6,10 +6,11 @@ import pathlib import logging -from pandas import HDFStore, DataFrame +from pandas import HDFStore, DataFrame, Series from dgp.lib.meterconfig import MeterConfig, AT1Meter from dgp.lib.types import Location, StillReading, FlightLine, DataPacket +import dgp.lib.eotvos as eov """ Dynamic Gravity Processor (DGP) :: project.py @@ -355,6 +356,20 @@ def gravity_file(self): except KeyError: return None, None + @property + def eotvos(self): + if self.gps is None: + return None + gps_data = self.gps + lat = gps_data['lat'] + lon = gps_data['long'] + ht = gps_data['ell_ht'] + rate = 10 + ev_corr = eov.calc_eotvos(lat, lon, ht, rate, eov.derivative) + # ev_series = Series(ev_corr, index=lat.index, name='eotvos') + # return ev_series + return ev_corr + def get_channel_data(self, channel): return self.gravity[channel] diff --git a/tests/test_eotvos.py b/tests/test_eotvos.py index 0d6d6d8..df37775 100644 --- a/tests/test_eotvos.py +++ b/tests/test_eotvos.py @@ -48,6 +48,7 @@ def test_eotvos(self): rate = 10 eotvos_a = eotvos.calc_eotvos(lat, lon, ht, rate, derivation_func=eotvos.derivative) + print(type(eotvos_a)) for i, value in enumerate(eotvos_a): try: self.assertAlmostEqual(value, result_eotvos[i], places=2) From 808a2a46a7e76cf3b3a667ca6c92c623efee2b77 Mon Sep 17 00:00:00 2001 From: bradyzp Date: Wed, 20 Sep 2017 21:36:33 -0600 Subject: [PATCH 010/236] TST: Added basic test to flight for gps and eotvos. Added testing to test_project to test flight import and processing of eotvos data via .eotvos property. Briefly tested eotvos plotting functionality with gps data imported. Exception handling needs to be added to deal with bad file inputs. --- dgp/gui/main.py | 9 ++++---- dgp/lib/eotvos.py | 9 +++----- dgp/lib/project.py | 17 ++++++++------ tests/sample_data/eotvos_short_input.txt | 2 +- tests/test_project.py | 28 +++++++++++++++++++++++- 5 files changed, 46 insertions(+), 19 deletions(-) diff --git a/dgp/gui/main.py b/dgp/gui/main.py index 950a8d3..c2c881b 100644 --- a/dgp/gui/main.py +++ b/dgp/gui/main.py @@ -161,8 +161,9 @@ def _init_plots(self) -> None: if gravity is not None: self.plot_time_series(plot, gravity, {0: 'gravity', 1: ['long', 'cross']}) - # if flight.eotvos is not None: - # self.plot_time_series(plot, flight.eotvos, {2: 'eotvos'}) + if flight.eotvos is not None: + print(flight.eotvos.columns) + self.plot_time_series(plot, flight.eotvos, {2: 'eotvos'}) self.log.debug("Initialized Flight Plot: {}".format(plot)) self.status.emit('Flight Plot {} Initialized'.format(flight.name)) @@ -324,8 +325,8 @@ def redraw(self, flt_id: str): flt = self.project.get_flight(flt_id) # type: prj.Flight if flt.gravity is not None: self.plot_time_series(plot, flt.gravity, {0: 'gravity', 1: ['long', 'cross']}) - # if flt.gps is not None: - # self.plot_time_series(plot, flt.eotvos, {2: 'eotvos'}) + if flt.gps is not None: + self.plot_time_series(plot, flt.eotvos, {2: 'eotvos'}) @staticmethod def plot_time_series(plot: LineGrabPlot, data: DataFrame, fields: Dict): diff --git a/dgp/lib/eotvos.py b/dgp/lib/eotvos.py index a6810aa..c8a0042 100644 --- a/dgp/lib/eotvos.py +++ b/dgp/lib/eotvos.py @@ -33,7 +33,7 @@ def derivative(y: array, datarate, edge_order=None): return ValueError('Invalid value for parameter n {1 or 2}') -def calc_eotvos(lat: array, lon: array, ht: array, datarate: float, derivation_func=np.gradient, +def calc_eotvos(lat: array, lon: array, ht: array, datarate: float, derivation_func=derivative, **kwargs): """ calc_eotvos: Calculate Eotvos Gravity Corrections @@ -126,9 +126,9 @@ def calc_eotvos(lat: array, lon: array, ht: array, datarate: float, derivation_f np.zeros(r_prime.size), (-dr_prime * cosD + r_prime * dD * sinD - dht) ]) - ci = (-ddr_prime * np.sin(D) - 2.0 * dr_prime * dD * cosD - r_prime * + ci = (-ddr_prime * sinD - 2.0 * dr_prime * dD * cosD - r_prime * (ddD * cosD - dD * dD * sinD)) - ck = (-ddr_prime * np.cos(D) + 2.0 * dr_prime * dD * sinD + r_prime * + ck = (-ddr_prime * cosD + 2.0 * dr_prime * dD * sinD + r_prime * (ddD * sinD + dD * dD * cosD) - ddht) r2dot = array([ ci, @@ -147,8 +147,6 @@ def calc_eotvos(lat: array, lon: array, ht: array, datarate: float, derivation_f -ddlat, (-ddlon * sin_lat - (dlon + We) * dlat * cos_lat) ]) - print("Shape w: {}".format(w.shape)) - print("Shape rdot: {}".format(rdot.shape)) w2_x_rdot = np.cross(2.0 * w, rdot, axis=0) wdot_x_r = np.cross(wdot, r, axis=0) w_x_r = np.cross(w, r, axis=0) @@ -178,7 +176,6 @@ def calc_eotvos(lat: array, lon: array, ht: array, datarate: float, derivation_f # the aircraft - the centrifugal acceleration of the earth, converted to mgal E = (acc[2] - wexwexr[2]) * mps2mgal if derivation_func is not np.gradient: - print("Padding correction") E = np.pad(E, (1, 1), 'edge') # Return Eotvos corrections diff --git a/dgp/lib/project.py b/dgp/lib/project.py index 0b1b1a5..fa0d53a 100644 --- a/dgp/lib/project.py +++ b/dgp/lib/project.py @@ -361,14 +361,17 @@ def eotvos(self): if self.gps is None: return None gps_data = self.gps - lat = gps_data['lat'] - lon = gps_data['long'] - ht = gps_data['ell_ht'] + # WARNING: It is vital to use the .values of the pandas Series, otherwise the eotvos func + # does not work properly for some reason + # TODO: Find out why that is ^ + index = gps_data['lat'].index + lat = gps_data['lat'].values + lon = gps_data['long'].values + ht = gps_data['ell_ht'].values rate = 10 - ev_corr = eov.calc_eotvos(lat, lon, ht, rate, eov.derivative) - # ev_series = Series(ev_corr, index=lat.index, name='eotvos') - # return ev_series - return ev_corr + ev_corr = eov.calc_eotvos(lat, lon, ht, rate) + ev_frame = DataFrame(ev_corr, index=index, columns=['eotvos']) + return ev_frame def get_channel_data(self, channel): return self.gravity[channel] diff --git a/tests/sample_data/eotvos_short_input.txt b/tests/sample_data/eotvos_short_input.txt index 0ee6bd4..1e7eb04 100644 --- a/tests/sample_data/eotvos_short_input.txt +++ b/tests/sample_data/eotvos_short_input.txt @@ -98,4 +98,4 @@ GPS Date,GPS Time, Lattitude, Longitude, Orthometric Heigth,Elipsoidal Height,Nu 9/14/2017,15:38:48.60, 39.9148624272,-105.057983561, 1615.949, 1599.147, 0, 0.00 9/14/2017,15:38:48.70, 39.9148624272,-105.057983561, 1615.949, 1599.147, 0, 0.00 9/14/2017,15:38:48.80, 39.9148624273,-105.057983561, 1615.949, 1599.147, 0, 0.00 - 9/14/2017,15:38:48.90, 39.9148624273,-105.057983561, 1615.949, 1599.147, 0, 0.00 + 9/14/2017,15:38:48.90, 39.9148624273,-105.057983561, 1615.949, 1599.147, 0, 0.00 \ No newline at end of file diff --git a/tests/test_project.py b/tests/test_project.py index 0fe8664..4245932 100644 --- a/tests/test_project.py +++ b/tests/test_project.py @@ -7,6 +7,7 @@ from .context import dgp from dgp.lib.gravity_ingestor import read_at1a +from dgp.lib.trajectory_ingestor import import_trajectory from dgp.lib.project import * from dgp.lib.meterconfig import * @@ -96,7 +97,32 @@ def test_associate_flight_data(self): class TestFlight(unittest.TestCase): def setUp(self): - pass + self._trj_data_path = 'tests/sample_data/eotvos_short_input.txt' + + + def test_flight_gps(self): + td = tempfile.TemporaryDirectory() + hdf_temp = Path(str(td.name)).joinpath('hdf5.h5') + prj = AirborneProject(Path(str(td.name)), 'test') + prj.hdf_path = hdf_temp + flight = Flight(prj, 'testflt') + prj.add_flight(flight) + self.assertEqual(len(prj.flights), 1) + gps_fields = ['mdy', 'hms', 'lat', 'long', 'ortho_ht', 'ell_ht', 'num_stats', 'pdop'] + traj_data =import_trajectory(self._trj_data_path, columns=gps_fields, skiprows=1, + timeformat='hms') + dp = DataPacket(traj_data, self._trj_data_path, 'gps') + + prj.add_data(dp, flight.uid) + print(flight.gps_file) + self.assertTrue(flight.gps is not None) + self.assertTrue(flight.eotvos is not None) + # TODO: Line by line comparison of eotvos data from flight + + try: + td.cleanup() + except OSError: + print("error") class TestMeterconfig(unittest.TestCase): From 3f5821a50052857333c87483e51d0ded63493614 Mon Sep 17 00:00:00 2001 From: bradyzp Date: Thu, 21 Sep 2017 09:21:17 -0600 Subject: [PATCH 011/236] CLN: Add specific function to plot 3 main graphs --- dgp/gui/main.py | 26 ++++++++++++++++++++++++++ 1 file changed, 26 insertions(+) diff --git a/dgp/gui/main.py b/dgp/gui/main.py index 950a8d3..13be667 100644 --- a/dgp/gui/main.py +++ b/dgp/gui/main.py @@ -327,6 +327,32 @@ def redraw(self, flt_id: str): # if flt.gps is not None: # self.plot_time_series(plot, flt.eotvos, {2: 'eotvos'}) + def plot_flight_main(self, plot: LineGrabPlot, flight: prj.Flight) -> None: + """ + Plot a flight on the main plot area as a time series, displaying gravity, long/cross and eotvos + By default, expects a plot with 3 subplots accesible via getattr notation. + Gravity channel will be plotted on subplot 0 + Long and Cross channels will be plotted on subplot 1 + Eotvos Correction channel will be plotted on subplot 2 + Parameters + ---------- + plot : LineGrabPlot + LineGrabPlot object used to draw the plot on + flight : prj.Flight + Flight object with related Gravity and GPS properties to plot + + Returns + ------- + None + """ + grav_series = flight.gravity + eotvos_series = flight.eotvos + plot.plot2(plot[0], grav_series['gravity']) + plot.plot2(plot[1], grav_series['cross']) + plot.plot2(plot[1], grav_series['long']) + plot.plot2(plot[2], eotvos_series) + plot.draw() + @staticmethod def plot_time_series(plot: LineGrabPlot, data: DataFrame, fields: Dict): plot.clear() From 320249637e701c1ef22312a288aad4e93dc614c9 Mon Sep 17 00:00:00 2001 From: bradyzp Date: Thu, 21 Sep 2017 11:40:43 -0600 Subject: [PATCH 012/236] ENH: Add Eotvos plotting to main flight plots. Fixed Flight.eotvos property to correctly call and calculate eotvos correction, and to return a DataFrame indexed by the input GPS index. Eotvos is then plotted on the 3rd horizontal plot in the main window. --- dgp/gui/main.py | 73 ++++++++++++++++++++++---------------------- dgp/lib/plotter.py | 9 ++++-- tests/test_eotvos.py | 6 ++-- 3 files changed, 48 insertions(+), 40 deletions(-) diff --git a/dgp/gui/main.py b/dgp/gui/main.py index c2b85ef..0ea14e3 100644 --- a/dgp/gui/main.py +++ b/dgp/gui/main.py @@ -126,7 +126,6 @@ def __init__(self, project: prj.GravityProject=None, *args): def load(self): self._init_plots() self._init_slots() - # self.update_project(signal_flight=True) self.project_tree.refresh() self.setWindowState(QtCore.Qt.WindowMaximized) self.save_project() @@ -157,13 +156,9 @@ def _init_plots(self) -> None: self.flight_plots[flight.uid] = plot, widget self.gravity_stack.addWidget(widget) - gravity = flight.gravity - if gravity is not None: - self.plot_time_series(plot, gravity, {0: 'gravity', 1: ['long', 'cross']}) - - if flight.eotvos is not None: - print(flight.eotvos.columns) - self.plot_time_series(plot, flight.eotvos, {2: 'eotvos'}) + # gravity = flight.gravity + self.log.debug("Plotting using plot_flight_main method") + self.plot_flight_main(plot, flight) self.log.debug("Initialized Flight Plot: {}".format(plot)) self.status.emit('Flight Plot {} Initialized'.format(flight.name)) @@ -226,17 +221,6 @@ def create_actions(self): def flight_info(self): self.log.info("Printing info about the selected flight: {}".format(self.current_flight)) - # Experimental - def set_progress_bar(self, value=100, progress=None): - if progress is None: - progress = QtWidgets.QProgressBar() - progress.setValue(value) - self.statusBar().addWidget(progress) - else: - progress.setValue(value) - - return progress - def set_logging_level(self, name: str): """PyQt Slot: Changes logging level to passed string logging level name.""" self.log.debug("Changing logging level to: {}".format(name)) @@ -311,22 +295,26 @@ def flight_changed(self, index: QtCore.QModelIndex) -> None: self.log.error("No plot for this flight found.") return - # TODO: Move this (and gps plot) into separate functions - # so we can call this on app startup to pre-plot everything - if flight.gravity is not None: - if not grav_plot.plotted: - self.plot_time_series(grav_plot, flight.gravity, {0: 'gravity', 1: ['long', 'cross']}) + if not grav_plot.plotted: + self.plot_flight_main(grav_plot, flight) + return + + def redraw(self, flt_id: str) -> None: + """ + Redraw the main flight plot (gravity, cross/long, eotvos) for the specific flight. - if flight.gps is not None: - self.log.debug("Flight has GPS Data") + Parameters + ---------- + flt_id : str + Flight uuid of flight to replot. - def redraw(self, flt_id: str): + Returns + ------- + None + """ plot, _ = self.flight_plots[flt_id] flt = self.project.get_flight(flt_id) # type: prj.Flight - if flt.gravity is not None: - self.plot_time_series(plot, flt.gravity, {0: 'gravity', 1: ['long', 'cross']}) - if flt.gps is not None: - self.plot_time_series(plot, flt.eotvos, {2: 'eotvos'}) + self.plot_flight_main(plot, flt) def plot_flight_main(self, plot: LineGrabPlot, flight: prj.Flight) -> None: """ @@ -335,6 +323,8 @@ def plot_flight_main(self, plot: LineGrabPlot, flight: prj.Flight) -> None: Gravity channel will be plotted on subplot 0 Long and Cross channels will be plotted on subplot 1 Eotvos Correction channel will be plotted on subplot 2 + After plotting, call the plot.draw() to set plot.plotted to true, and draw the figure. + Parameters ---------- plot : LineGrabPlot @@ -348,10 +338,12 @@ def plot_flight_main(self, plot: LineGrabPlot, flight: prj.Flight) -> None: """ grav_series = flight.gravity eotvos_series = flight.eotvos - plot.plot2(plot[0], grav_series['gravity']) - plot.plot2(plot[1], grav_series['cross']) - plot.plot2(plot[1], grav_series['long']) - plot.plot2(plot[2], eotvos_series) + if grav_series is not None: + plot.plot2(plot[0], grav_series['gravity']) + plot.plot2(plot[1], grav_series['cross']) + plot.plot2(plot[1], grav_series['long']) + if eotvos_series is not None: + plot.plot2(plot[2], eotvos_series['eotvos']) plot.draw() @staticmethod @@ -582,17 +574,26 @@ def generate_airborne_model(self, project: prj.AirborneProject): return model, first_index def contextMenuEvent(self, event: QtGui.QContextMenuEvent, *args, **kwargs): - context_ind = self.indexAt(event.pos()) + context_ind = self.indexAt(event.pos()) # get the index of the item under the click event context_focus = self.model().itemFromIndex(context_ind) info_slot = functools.partial(self.flight_info, context_focus) + plot_slot = functools.partial(self.flight_plot, context_focus) menu = QtWidgets.QMenu() info_action = QtWidgets.QAction("Info") info_action.triggered.connect(info_slot) + plot_action = QtWidgets.QAction("Plot in new window") + plot_action.triggered.connect(plot_slot) + menu.addAction(info_action) + menu.addAction(plot_action) menu.exec_(event.globalPos()) event.accept() + def flight_plot(self, item): + print("Opening new plot for item") + pass + def flight_info(self, item): data = item.data(QtCore.Qt.UserRole) if not (isinstance(data, prj.Flight) or isinstance(data, prj.GravityProject)): diff --git a/dgp/lib/plotter.py b/dgp/lib/plotter.py index 1aa3abd..cbaada3 100644 --- a/dgp/lib/plotter.py +++ b/dgp/lib/plotter.py @@ -60,6 +60,7 @@ def generate_subplots(self, rows: int) -> None: sp = self.figure.add_subplot(rows, 1, i + 1, sharex=self._axes[0]) # type: Axes sp.grid(True) + sp.get_xaxis().set_major_formatter(DateFormatter('%H:%M:%S')) sp.name = 'Axes {}'.format(i) # sp.callbacks.connect('xlim_changed', set_x_formatter) self._axes.append(sp) @@ -111,6 +112,10 @@ def __init__(self, n=1, title=None, parent=None): if title: self.figure.suptitle(title, y=1) + def draw(self): + self.plotted = True + super().draw() + def clear(self): self._lines = {} self.resample = slice(None, None, 20) @@ -118,6 +123,7 @@ def clear(self): ax.cla() ax.grid(True) # Reconnect the xlim_changed callback after clearing + ax.get_xaxis().set_major_formatter(DateFormatter('%H:%M:%S')) ax.callbacks.connect('xlim_changed', self._on_xlim_changed) self.draw() @@ -128,7 +134,6 @@ def onclick(self, event: MouseEvent): # Check that the click event happened within one of the subplot axes if event.inaxes not in self._axes: return - print("Xdata: {}".format(event.xdata)) self.log.info("Xdata: {}".format(event.xdata)) caxes = event.inaxes # type: Axes @@ -284,8 +289,8 @@ def _on_xlim_changed(self, changed: Axes): ax.draw_artist(line[0]) print("Resampling to: {}".format(self.resample)) ax.relim() + ax.get_xaxis().set_major_formatter(DateFormatter('%H:%M:%S')) self.figure.canvas.draw() - # ax.get_xaxis().set_major_formatter(DateFormatter('%H:%M:%S')) def get_toolbar(self, parent=None) -> QtWidgets.QToolBar: """ diff --git a/tests/test_eotvos.py b/tests/test_eotvos.py index df37775..ddcf834 100644 --- a/tests/test_eotvos.py +++ b/tests/test_eotvos.py @@ -39,7 +39,6 @@ def test_eotvos(self): result_eotvos = [] with sample_dir.joinpath('eotvos_short_result.csv').open() as fd: test_data = csv.DictReader(fd) - # print(test_data.fieldnames) for line in test_data: result_eotvos.append(float(line['Eotvos_full'])) lat = data['lat'].values @@ -48,7 +47,10 @@ def test_eotvos(self): rate = 10 eotvos_a = eotvos.calc_eotvos(lat, lon, ht, rate, derivation_func=eotvos.derivative) - print(type(eotvos_a)) + # eotvos_b = eotvos.calc_eotvos(lat, lon, ht, rate, derivation_func=np.gradient) + # print(eotvos_a) + # print(eotvos_b) + for i, value in enumerate(eotvos_a): try: self.assertAlmostEqual(value, result_eotvos[i], places=2) From b5c6cbfa7c7ca8fc0adb201262642ff74792af88 Mon Sep 17 00:00:00 2001 From: bradyzp Date: Thu, 21 Sep 2017 16:14:02 -0600 Subject: [PATCH 013/236] ENH: Add preview dialog for data import, allow column matching. Added file preview dialog for importing GPS/Gravity data, and ability to switch column data headers as needed using a drop-down combo box. --- dgp/gui/dialogs.py | 99 ++++++++++++- dgp/gui/loader.py | 23 ++- dgp/gui/main.py | 40 ++++-- dgp/gui/models.py | 62 +++++++- dgp/gui/ui/advanced_data_import.ui | 219 +++++++++++++++++++++++++++++ dgp/lib/gravity_ingestor.py | 80 ++++++----- dgp/lib/plotter.py | 7 +- 7 files changed, 468 insertions(+), 62 deletions(-) create mode 100644 dgp/gui/ui/advanced_data_import.ui diff --git a/dgp/gui/dialogs.py b/dgp/gui/dialogs.py index 5a3047a..4195775 100644 --- a/dgp/gui/dialogs.py +++ b/dgp/gui/dialogs.py @@ -5,22 +5,27 @@ import functools import datetime import pathlib -from typing import Dict, Union +from typing import Dict, Union, List from PyQt5 import Qt, QtWidgets, QtCore from PyQt5.uic import loadUiType import dgp.lib.project as prj -from dgp.gui.models import TableModel +from dgp.gui.models import TableModel, SelectionDelegate from dgp.gui.utils import ConsoleHandler, LOG_COLOR_MAP data_dialog, _ = loadUiType('dgp/gui/ui/data_import_dialog.ui') +advanced_import, _ = loadUiType('dgp/gui/ui/advanced_data_import.ui') flight_dialog, _ = loadUiType('dgp/gui/ui/add_flight_dialog.ui') project_dialog, _ = loadUiType('dgp/gui/ui/project_dialog.ui') info_dialog, _ = loadUiType('dgp/gui/ui/info_dialog.ui') +class BaseDialog(QtWidgets.QDialog): + pass + + class ImportData(QtWidgets.QDialog, data_dialog): """ Rationalization: @@ -110,6 +115,96 @@ def content(self) -> (pathlib.Path, str, prj.Flight): return self.path, self.dtype, self.flight +class AdvancedImport(QtWidgets.QDialog, advanced_import): + def __init__(self, project, flight, parent=None): + """ + + Parameters + ---------- + project : GravityProject + Parent project + flight : Flight + Currently selected flight when Import button was clicked + parent : QWidget + Parent Widget + """ + super().__init__(parent=parent) + self.setupUi(self) + self._preview_limit = 3 + self._project = project + self._path = None + self._flight = flight + + for flt in project: + self.combo_flights.addItem(flt.name, flt) + if flt == self._flight: # scroll to this item if it matches self.flight + self.combo_flights.setCurrentIndex(self.combo_flights.count() - 1) + + # Signals/Slots + self.line_path.textChanged.connect(self._preview) + self.btn_browse.clicked.connect(self.browse_file) + self.btn_setcols.clicked.connect(self._capture) + self.btn_reload.clicked.connect(functools.partial(self._preview, self._path)) + + @property + def content(self) -> (str, str, List, prj.Flight): + return self._path, self._dtype(), self._capture(), self._flight + + def accept(self) -> None: + self._flight = self.combo_flights.currentData() + super().accept() + return + + def _capture(self) -> Union[None, List]: + table = self.table_preview # type: QtWidgets.QTableView + model = table.model() # type: TableModel + if model is None: + return None + print("Row 0 {}".format(model.get_row(0))) + fields = model.get_row(0) + return fields + + def _dtype(self): + return {'GPS': 'gps', 'Gravity': 'gravity'}.get(self.group_dtype.checkedButton().text().replace('&', ''), + 'gravity') + + def _preview(self, path: str): + path = pathlib.Path(path) + if not path.exists(): + print("Path doesn't exist") + return + lines = [] + with path.open('r') as fd: + for i, line in enumerate(fd): + cells = line.split(',') + lines.append(cells) + if i >= self._preview_limit: + break + + dtype = self._dtype() + if dtype == 'gravity': + fields = ['gravity', 'long', 'cross', 'beam', 'temp', 'status', 'pressure', + 'Etemp', 'GPSweek', 'GPSweekseconds'] + elif dtype == 'gps': + fields = ['mdy', 'hms', 'lat', 'long', 'ell_ht', 'ortho_ht', 'num_sats', 'pdop'] + else: + return + delegate = SelectionDelegate(fields) + model = TableModel(fields, editheader=True) + model.append(*fields) + for line in lines: + model.append(*line) + self.table_preview.setModel(model) + self.table_preview.setItemDelegate(delegate) + + def browse_file(self): + path, _ = QtWidgets.QFileDialog.getOpenFileName(self, "Select Data File", os.getcwd(), + "Data (*.dat *.csv *.txt)") + if path: + self.line_path.setText(str(path)) + self._path = path + + class AddFlight(QtWidgets.QDialog, flight_dialog): def __init__(self, project, *args): super().__init__(*args) diff --git a/dgp/gui/loader.py b/dgp/gui/loader.py index 8acf2cf..9aadfdd 100644 --- a/dgp/gui/loader.py +++ b/dgp/gui/loader.py @@ -1,6 +1,7 @@ # coding: utf-8 import pathlib +from typing import List from pandas import DataFrame from PyQt5.QtCore import QObject, pyqtSignal, pyqtSlot, QThread, pyqtBoundSignal @@ -15,20 +16,34 @@ class LoadFile(QThread): loaded = pyqtSignal() # type: pyqtBoundSignal data = pyqtSignal(DataPacket) # type: pyqtBoundSignal - def __init__(self, path: pathlib.Path, datatype: str, flight_id: str, parent=None, **kwargs): + def __init__(self, path: pathlib.Path, datatype: str, flight_id: str, fields: List=None, parent=None, **kwargs): super().__init__(parent) self._path = path self._dtype = datatype self._flight = flight_id self._functor = {'gravity': read_at1a, 'gps': import_trajectory}.get(datatype, None) + self._fields = fields def run(self): if self._dtype == 'gps': - fields = ['mdy', 'hms', 'lat', 'long', 'ortho_ht', 'ell_ht', 'num_sats', 'pdop'] - df = self._functor(self._path, columns=fields, skiprows=1, timeformat='hms') + df = self._load_gps() else: - df = self._functor(self._path) + df = self._load_gravity() + # TODO: Get rid of DataPacket, find way to embed metadata in DataFrame data = DataPacket(df, self._path, self._dtype) self.progress.emit(1) self.data.emit(data) self.loaded.emit() + + def _load_gps(self): + if self._fields is not None: + fields = self._fields + else: + fields = ['mdy', 'hms', 'lat', 'long', 'ortho_ht', 'ell_ht', 'num_sats', 'pdop'] + return self._functor(self._path, columns=fields, skiprows=1, timeformat='hms') + + def _load_gravity(self): + if self._fields is None: + return self._functor(self._path) + else: + return self._functor(self._path, fields=self._fields) diff --git a/dgp/gui/main.py b/dgp/gui/main.py index 0ea14e3..b672dfb 100644 --- a/dgp/gui/main.py +++ b/dgp/gui/main.py @@ -16,7 +16,7 @@ from dgp.gui.loader import LoadFile from dgp.lib.plotter import LineGrabPlot from dgp.gui.utils import ConsoleHandler, LOG_FORMAT, get_project_file -from dgp.gui.dialogs import ImportData, AddFlight, CreateProject, InfoDialog +from dgp.gui.dialogs import ImportData, AddFlight, CreateProject, InfoDialog, AdvancedImport from dgp.gui.models import TableModel # Load .ui form @@ -230,7 +230,7 @@ def set_logging_level(self, name: str): self.log.setLevel(level) def write_console(self, text, level): - """PyQt Slot: Log a message to the GUI console""" + """PyQt Slot: Logs a message to the GUI console""" log_color = {'DEBUG': QColor('DarkBlue'), 'INFO': QColor('Green'), 'WARNING': QColor('Red'), 'ERROR': QColor('Pink'), 'CRITICAL': QColor( 'Orange')}.get(level.upper(), QColor('Black')) @@ -336,14 +336,15 @@ def plot_flight_main(self, plot: LineGrabPlot, flight: prj.Flight) -> None: ------- None """ - grav_series = flight.gravity - eotvos_series = flight.eotvos - if grav_series is not None: - plot.plot2(plot[0], grav_series['gravity']) - plot.plot2(plot[1], grav_series['cross']) - plot.plot2(plot[1], grav_series['long']) - if eotvos_series is not None: - plot.plot2(plot[2], eotvos_series['eotvos']) + grav_df = flight.gravity + eotvos_df = flight.eotvos + plot.clear() + if grav_df is not None: + plot.plot2(plot[0], grav_df['gravity']) + plot.plot2(plot[1], grav_df['cross']) + plot.plot2(plot[1], grav_df['long']) + if eotvos_df is not None: + plot.plot2(plot[2], eotvos_df['eotvos']) plot.draw() @staticmethod @@ -358,7 +359,7 @@ def plot_time_series(plot: LineGrabPlot, data: DataFrame, fields: Dict): series = data.get(field) # type: Series plot.plot2(plot[index], series) plot.draw() - plot.plotted = True + # plot.plotted = True def progress_dialog(self, title, min=0, max=1): dialog = QtWidgets.QProgressDialog(title, "Cancel", min, max, self) @@ -369,12 +370,12 @@ def progress_dialog(self, title, min=0, max=1): dialog.setValue(0) return dialog - def import_data(self, path: pathlib.Path, dtype: str, flight: prj.Flight): + def import_data(self, path: pathlib.Path, dtype: str, flight: prj.Flight, fields=None): self.log.info("Importing <{dtype}> from: Path({path}) into ".format(dtype=dtype, path=str(path), name=flight.name)) if path is None: return False - loader = LoadFile(path, dtype, flight.uid, self) + loader = LoadFile(path, dtype, flight.uid, fields=fields, parent=self) # Curry functions to execute on thread completion. add_data = functools.partial(self.project.add_data, flight_uid=flight.uid) @@ -397,12 +398,21 @@ def import_data(self, path: pathlib.Path, dtype: str, flight: prj.Flight): def import_data_dialog(self) -> None: """Load data file (GPS or Gravity) using a background Thread, then hand it off to the project.""" + dialog = AdvancedImport(self.project, self.current_flight) + if dialog.exec_(): + path, dtype, fields, flight = dialog.content + # print("path: {} type: {}\nfields: {}\nflight: {}".format(path, dtype, fields, flight)) + self.import_data(path, dtype, flight, fields=fields) + return + + return + dialog = ImportData(self.project, self.current_flight) if dialog.exec_(): path, dtype, flt_id = dialog.content flight = self.project.get_flight(flt_id) - plot, _ = self.flight_plots[flt_id] - plot.plotted = False + # plot, _ = self.flight_plots[flt_id] + # plot.plotted = False self.log.info("Importing {} file from {} into flight: {}".format(dtype, path, flight.uid)) self.import_data(path, dtype, flight) diff --git a/dgp/gui/models.py b/dgp/gui/models.py index d308014..ea15bb0 100644 --- a/dgp/gui/models.py +++ b/dgp/gui/models.py @@ -2,19 +2,21 @@ """Provide definitions of the models used by the Qt Application in our model/view widgets.""" -from PyQt5 import QtCore +from PyQt5 import QtCore, QtWidgets, Qt +from PyQt5.Qt import QWidget, QModelIndex, QAbstractItemModel, QStyleOptionViewItem, QComboBox class TableModel(QtCore.QAbstractTableModel): """Simple table model of key: value pairs.""" - def __init__(self, columns, editable=None, parent=None): + def __init__(self, columns, editable=None, editheader=False, parent=None): super().__init__(parent=parent) # TODO: Allow specification of which columns are editable # List of column headers self._cols = columns self._rows = [] self._editable = editable + self._editheader = editheader self._updates = {} def set_object(self, obj): @@ -33,6 +35,13 @@ def append(self, *args): self._rows.append(args[:len(self._cols)]) return True + def get_row(self, row: int): + try: + return self._rows[row] + except IndexError: + print("Invalid row index") + return None + @property def updates(self): return self._updates @@ -51,7 +60,7 @@ def columnCount(self, parent=None, *args, **kwargs): return len(self._cols) def data(self, index: QtCore.QModelIndex, role=None): - if role == QtCore.Qt.DisplayRole: + if role == QtCore.Qt.DisplayRole or role == QtCore.Qt.EditRole: try: return self._rows[index.row()][index.column()] except IndexError: @@ -60,8 +69,9 @@ def data(self, index: QtCore.QModelIndex, role=None): def flags(self, index: QtCore.QModelIndex): flags = QtCore.Qt.ItemIsSelectable | QtCore.Qt.ItemIsEnabled - - if self._editable is not None and index.column() in self._editable: # Allow the values column to be edited + if index.row() == 0 and self._editheader: + flags = flags | QtCore.Qt.ItemIsEditable + elif self._editable is not None and index.column() in self._editable: # Allow the values column to be edited flags = flags | QtCore.Qt.ItemIsEditable return flags @@ -80,3 +90,45 @@ def setData(self, index: QtCore.QModelIndex, value: QtCore.QVariant, role=None): return True else: return False + + +class SelectionDelegate(Qt.QStyledItemDelegate): + def __init__(self, choices, parent=None): + super().__init__(parent=parent) + self._choices = choices + + def createEditor(self, parent: QWidget, option: QStyleOptionViewItem, index: QModelIndex) -> QWidget: + """Creates the editor widget to display in the view""" + editor = QComboBox(parent) + editor.setFrame(False) + for choice in sorted(self._choices): + editor.addItem(choice) + return editor + + def setEditorData(self, editor: QWidget, index: QModelIndex) -> None: + """Set the value displayed in the editor widget based on the model data at the index""" + combobox = editor # type: QComboBox + value = str(index.model().data(index, QtCore.Qt.EditRole)) + index = combobox.findText(value) # returns -1 if value not found + if index != -1: + combobox.setCurrentIndex(index) + else: + combobox.addItem(value) + combobox.setCurrentIndex(combobox.count() - 1) + + def setModelData(self, editor: QWidget, model: QAbstractItemModel, index: QModelIndex) -> None: + combobox = editor # type: QComboBox + value = str(combobox.currentText()) + row = index.row() + for c in range(model.columnCount()): + mindex = model.index(row, c) + data = str(model.data(mindex, QtCore.Qt.DisplayRole)) + if data == value: + model.setData(mindex, '', QtCore.Qt.EditRole) + model.setData(index, value, QtCore.Qt.EditRole) + + def updateEditorGeometry(self, editor: QWidget, option: QStyleOptionViewItem, index: QModelIndex) -> None: + editor.setGeometry(option.rect) + + + diff --git a/dgp/gui/ui/advanced_data_import.ui b/dgp/gui/ui/advanced_data_import.ui new file mode 100644 index 0000000..a0249bb --- /dev/null +++ b/dgp/gui/ui/advanced_data_import.ui @@ -0,0 +1,219 @@ + + + AdvancedImportData + + + + 0 + 0 + 670 + 502 + + + + Advanced Import + + + + + + GroupBox + + + + + + true + + + + + + + &Browse + + + + + + + + + + Flight + + + + + + + + + + Meter + + + + + + + &Gravity + + + true + + + group_dtype + + + + + + + G&PS + + + group_dtype + + + + + + + Data Type: + + + + + + + + + + + + + + + + Preview: + + + + + + + Qt::Horizontal + + + + 40 + 20 + + + + + + + + <> + + + QToolButton::DelayedPopup + + + Qt::ToolButtonFollowStyle + + + Qt::DownArrow + + + + + + + Reload + + + + + + + + + + false + + + + + + + Set Columns + + + + + + + Qt::Vertical + + + + 20 + 40 + + + + + + + + Qt::Horizontal + + + QDialogButtonBox::Cancel|QDialogButtonBox::Ok + + + + + + + + + buttonBox + accepted() + AdvancedImportData + accept() + + + 248 + 254 + + + 157 + 274 + + + + + buttonBox + rejected() + AdvancedImportData + reject() + + + 316 + 260 + + + 286 + 274 + + + + + + + + diff --git a/dgp/lib/gravity_ingestor.py b/dgp/lib/gravity_ingestor.py index 5769109..59484a0 100644 --- a/dgp/lib/gravity_ingestor.py +++ b/dgp/lib/gravity_ingestor.py @@ -19,6 +19,7 @@ from .time_utils import convert_gps_time from .etc import interp_nans + def _extract_bits(bitfield, columns=None, as_bool=False): """ Function that extracts bitfield values from integers. @@ -43,6 +44,7 @@ def _extract_bits(bitfield, columns=None, as_bool=False): pandas.DataFrame """ + def _unpack_bits(n): x = np.array(struct.unpack('4B', struct.pack('>I', n)), dtype=np.uint8) return np.flip(np.unpackbits(x), axis=0) @@ -66,7 +68,8 @@ def _unpack_bits(n): else: return df -def read_at1a(path, fill_with_nans=True, interp=False): + +def read_at1a(path, fields=None, fill_with_nans=True, interp=False): """ Read and parse gravity data file from DGS AT1A (Airborne) meter. @@ -77,6 +80,9 @@ def read_at1a(path, fill_with_nans=True, interp=False): ---------- path : str Filesystem path to gravity data file + fields: List + Optional List of fields to specify when importing the data, otherwise defaults are assumed + This can be used if the data file has fields in an abnormal order fill_with_nans : boolean, default True Fills time gaps with NaNs for all fields interp : boolean, default False @@ -87,10 +93,10 @@ def read_at1a(path, fill_with_nans=True, interp=False): pandas.DataFrame Gravity data indexed by datetime. """ - fields = ['gravity', 'long', 'cross', 'beam', 'temp', 'status', 'pressure', - 'Etemp', 'GPSweek', 'GPSweekseconds'] + if fields is None: + fields = ['gravity', 'long', 'cross', 'beam', 'temp', 'status', 'pressure', 'Etemp', 'GPSweek', + 'GPSweekseconds'] - data = [] df = pd.read_csv(path, header=None, engine='c', na_filter=False) df.columns = fields @@ -101,7 +107,7 @@ def read_at1a(path, fill_with_nans=True, interp=False): 'long_sat', 'cross_sat', 'on_line'] status = _extract_bits(df['status'], columns=status_field_names, - as_bool=True) + as_bool=True) df = pd.concat([df, status], axis=1) df.drop('status', axis=1, inplace=True) @@ -132,26 +138,28 @@ def read_at1a(path, fill_with_nans=True, interp=False): return df + def _parse_ZLS_file_name(filename): - # split by underscore - fname = [e.split('.') for e in filename.split('_')] + # split by underscore + fname = [e.split('.') for e in filename.split('_')] - # split hour from day and then flatten into one tuple - b = [int(el) for fname_parts in fname for el in fname_parts] + # split hour from day and then flatten into one tuple + b = [int(el) for fname_parts in fname for el in fname_parts] + + # generate datetime + c = datetime.datetime(b[0], 1, 1) + datetime.timedelta(days=b[2] - 1, + hours=b[1]) + return c - # generate datetime - c = datetime.datetime(b[0], 1, 1) + datetime.timedelta(days=b[2]-1, - hours=b[1]) - return c def _read_ZLS_format_file(filepath): col_names = ['line_name', 'year', 'day', 'hour', 'minute', 'second', - 'sensor', 'spring_tension', 'cross_coupling', - 'raw_beam', 'vcc', 'al', 'ax', 've2', 'ax2', 'xacc2', - 'lacc2', 'xacc', 'lacc', 'par_port', 'platform_period'] + 'sensor', 'spring_tension', 'cross_coupling', + 'raw_beam', 'vcc', 'al', 'ax', 've2', 'ax2', 'xacc2', + 'lacc2', 'xacc', 'lacc', 'par_port', 'platform_period'] col_widths = [10, 4, 3, 2, 2, 2, 8, 8, 7, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, - 8, 6] + 8, 6] time_columns = ['year', 'day', 'hour', 'minute', 'second'] @@ -162,8 +170,8 @@ def _read_ZLS_format_file(filepath): time_fmt = lambda x: '{:02d}'.format(x) t = df['year'].map(str) + df['day'].map(day_fmt) + \ - df['hour'].map(time_fmt) + df['minute'].map(time_fmt) + \ - df['second'].map(time_fmt) + df['hour'].map(time_fmt) + df['minute'].map(time_fmt) + \ + df['second'].map(time_fmt) # index by datetime df.index = pd.to_datetime(t, format='%Y%j%H%M%S') @@ -171,6 +179,7 @@ def _read_ZLS_format_file(filepath): return df + def read_zls(dirpath, begin_time=None, end_time=None, excludes=['.*']): """ Read and parse gravity data file from ZLS meter. @@ -205,26 +214,26 @@ def read_zls(dirpath, begin_time=None, end_time=None, excludes=['.*']): # list files in directory files = [_parse_ZLS_file_name(f) for f in os.listdir(dirpath) if os.path.isfile(os.path.join(dirpath, f)) - if not re.match(excludes, f)] + if not re.match(excludes, f)] # sort files files = sorted(files) # validate begin and end times if begin_time is None and end_time is None: - begin_time = files[0] - end_time = files[-1] + datetime.timedelta(hours=1) + begin_time = files[0] + end_time = files[-1] + datetime.timedelta(hours=1) elif begin_time is None and end_time is not None: - begin_time = files[0] - if end_time < begin_time or end_time > files[-1]: - raise ValueError('end time ({end}) is out of bounds' + begin_time = files[0] + if end_time < begin_time or end_time > files[-1]: + raise ValueError('end time ({end}) is out of bounds' .format(end=end_time)) elif begin_time is not None and end_time is None: - end_time = files[-1] - if begin_time > end_time or begin_time < files[0]: - raise ValueError('begin time ({begin}) is out of bounds' + end_time = files[-1] + if begin_time > end_time or begin_time < files[0]: + raise ValueError('begin time ({begin}) is out of bounds' .format(begin=begin_time)) else: @@ -234,20 +243,23 @@ def read_zls(dirpath, begin_time=None, end_time=None, excludes=['.*']): # filter file list based on begin and end times files = filter(lambda x: (x >= begin_time and x <= end_time) - or (begin_time >= x and - begin_time <= x + datetime.timedelta(hours=1)) - or (end_time - datetime.timedelta(hours=1) <= x and - end_time >= x), files) + or (begin_time >= x and + begin_time <= x + datetime.timedelta(hours=1)) + or (end_time - datetime.timedelta(hours=1) <= x and + end_time >= x), files) # convert to ZLS-type file names files = [dt.strftime('%Y_%H.%j') for dt in files] df = pd.DataFrame() for f in files: - frame = _read_ZLS_format_file(os.path.join(dirpath, f)) - df = pd.concat([df, frame]) + frame = _read_ZLS_format_file(os.path.join(dirpath, f)) + df = pd.concat([df, frame]) df.drop(df.index[df.index < begin_time], inplace=True) df.drop(df.index[df.index > end_time], inplace=True) return df + + +FUNCTION_MAP = {'at1a': read_at1a, 'zls': read_zls} diff --git a/dgp/lib/plotter.py b/dgp/lib/plotter.py index cbaada3..f83ceb7 100644 --- a/dgp/lib/plotter.py +++ b/dgp/lib/plotter.py @@ -22,7 +22,6 @@ import numpy as np - class BasePlottingCanvas(FigureCanvas): """ BasePlottingCanvas sets up the basic Qt Canvas parameters, and is designed @@ -60,7 +59,8 @@ def generate_subplots(self, rows: int) -> None: sp = self.figure.add_subplot(rows, 1, i + 1, sharex=self._axes[0]) # type: Axes sp.grid(True) - sp.get_xaxis().set_major_formatter(DateFormatter('%H:%M:%S')) + # sp.xaxis_date() + # sp.get_xaxis().set_major_formatter(DateFormatter('%H:%M:%S')) sp.name = 'Axes {}'.format(i) # sp.callbacks.connect('xlim_changed', set_x_formatter) self._axes.append(sp) @@ -123,6 +123,7 @@ def clear(self): ax.cla() ax.grid(True) # Reconnect the xlim_changed callback after clearing + ax.xaxis_date() ax.get_xaxis().set_major_formatter(DateFormatter('%H:%M:%S')) ax.callbacks.connect('xlim_changed', self._on_xlim_changed) self.draw() @@ -232,6 +233,8 @@ def plot(self, ax: Axes, xdata, ydata, **kwargs): ax.legend() def plot2(self, ax: Axes, series: Series): + # ax.xaxis_date() + ax.get_xaxis().set_major_formatter(DateFormatter('%H:%M:%S')) if self._lines.get(id(ax), None) is None: self._lines[id(ax)] = [] sample_series = series[self.resample] From 3005a874f07eaf9bbb85c4bdeff14f5e2796c50e Mon Sep 17 00:00:00 2001 From: chris Date: Sun, 24 Sep 2017 14:56:21 -0400 Subject: [PATCH 014/236] DOC: Added contribution guidelines and rewrote readme. Added contribution guidelines in contribution.rst. Rewrote the README to provide more info for users and contributors. --- README.rst | 64 +++++++++--- docs/source/contributing.rst | 184 +++++++++++++++++++++++++++++++++++ docs/source/index.rst | 3 +- 3 files changed, 237 insertions(+), 14 deletions(-) create mode 100644 docs/source/contributing.rst diff --git a/README.rst b/README.rst index 0c97ac0..b1860bf 100644 --- a/README.rst +++ b/README.rst @@ -3,17 +3,55 @@ DGP (Dynamic Gravity Processor) .. image:: https://travis-ci.org/DynamicGravitySystems/DGP.svg?branch=master :target: https://travis-ci.org/DynamicGravitySystems/DGP +What is it +---------- +**DGP** is an library as well an application for processing gravity data collected +with dynamic gravity systems, such as those run on ships and aircraft. + +The library can be used to automate the processing workflow and experiment with +new techniques. The application was written to fulfill the needs of of gravity +processing in production environment. + +The project aims to bring all gravity data processing under a single umbrella by: + +- accommodating various sensor types, data formats, and processing techniques +- providing a flexible framework to allow for experimentation with the workflow +- providing a robust and efficient system for production-level processing + +Dependencies +------------ +- numpy >= 1.13.1 +- pandas >= 0.20.3 +- scipy >= 0.19.1 +- matplotlib >= 2.0.2 +- PyQt5 >= 5.9 +- PyTables_ >= 3.0.0 + +.. _PyTables: http://www.pytables.org + +License +------- +`Apache License, Version 2.0`_ + +.. _`Apache License, Version 2.0`: https://www.apache.org/licenses/LICENSE-2.0 + +Documentation +------------- +The Sphinx documentation included in the repository and hosted on readthedocs_ +should provide a good starting point for learning how to use the library. + +.. _readthedocs: http://dgp.readthedocs.io/en/latest/ + +Documentation on how to use the application to follow. + +Contributing to DGP ------------------- -Package Structure -------------------- -1. dgp - 1. lib - 1. gravity_ingestor.py - Functions for importing Gravity data - 2. trajectory_ingestor.py - Functions for importing GPS (Trajectory) data - 2. ui - - Contains all Qt Designer UI files and resources - 3. main.pyw - Primary GUI classes and code - 4. loader.py - GUI Threading code - 5. resources_rc.py - Compiled PyQt resources file -2. docs -3. tests +All contributions in the form of bug reports, bug fixes, documentation +improvements, enhancements, and ideas are welcome. + +If you would like to contribute in any of these ways, then you can start at +the `GitHub "issues" tab`_. A detailed guide on how to contribute can be found +here_. + +.. _`GitHub "issues" tab`: https://github.com/DynamicGravitySystems/DGP/issues +.. _here: http://dgp.readthedocs.io/en/latest/contributing.html diff --git a/docs/source/contributing.rst b/docs/source/contributing.rst new file mode 100644 index 0000000..5fb33e4 --- /dev/null +++ b/docs/source/contributing.rst @@ -0,0 +1,184 @@ +############ +Contributing +############ + +Creating a branch +----------------- +This project uses the GitFlow_ branching model. The ``master`` branch reflects the current +production-ready state. The ``develop`` branch is a perpetual development branch. + +.. _GitFlow: http://nvie.com/posts/a-successful-git-branching-model/ + +New development is done in feature branches which are merged back +into the ``develop`` branch once development is completed. Prior to a release, +a release branch is created off of ``develop``. When the +release is ready, the release branch is merged into ``master`` and ``develop``. + +Development branches are named with a prefix according to their purpose: + +- ``feature/``: An added feature or improved functionality. +- ``bug/``: Bug fix. +- ``doc/``: Addition or cleaning of documentation. +- ``clean/``: Code clean-up. + +When starting a new branch, be sure to branch from develop:: + + $ git checkout -b my_feature develop + +Keep any changes in this branch specific to one bug or feature. If the develop +branch has advanced since your branch was first created, then you can update +your branch by retrieving those changes from the develop branch:: + + $ git fetch origin + $ git rebase origin/develop + +This will replay your commits on top of the latest version of the develop branch. +If there are merge conflicts, then you must resolve them. + +Committing your code +-------------------- +When committing to your changes, we recommend structuring the commit message +in the following way: + +- subject line with less than < 80 chars +- one blank line +- optionally, a commit message body + +Please reference the relevant GitHub issues in your commit message using +GH1234 or #1234. + +For the subject line, this project uses the same convention for commit message +prefix and layout as the Pandas project. Here are some common prefixes and +guidelines for when to use them: + +- ENH: Enhancement, new functionality +- BUG: Bug fix +- DOC: Additions/updates to documentation +- TST: Additions/updates to tests +- BLD: Updates to the build process/scripts +- PERF: Performance improvement +- CLN: Code cleanup + +Combining commits ++++++++++++++++++ +When you're ready to make a pull request and if you have made multiple commits, +then you may want to combine, or "squash", those commits. Squashing commits +helps to maintain a compact commit history, especially if a number of commits +were made to fix errors or bugs along the way. To squash your commits:: + + git rebase -i HEAD-# + +where # is the number of commits you want to combine. If you want to squash +all commits on the branch:: + + git rebase -i --root + +Then you will need to push the branch forcefully to replace the current commits +with the new ones:: + + git push origin new-feature -f + +Incorporating a finished feature on develop ++++++++++++++++++++++++++++++++++++++++++++ +Finished features should be added to the develop branch to be included in the +next release:: + + $ git checkout develop + Switched to branch 'develop' + $ git merge --no-ff myfeature + Updating ea1b82a..05e9557 + (summary of changes) + $ git branch -d myfeature + Deleted branch myfeature (was 05e9557). + $ git push origin develop + +The ``--no-ff`` flag causes the merge to always create a commit, even if it can +be done with a fast-forward. This way we record the existence of the feature +branch even after it has been deleted, and it groups all of the relevant +commits for this feature. + +Code standards +-------------- +*DGP* uses the PEP8_ standard. In particular, that means: + +- we restrict line-length to 79 characters to promote readability +- passing arguments should have spaces after commas, *e.g.*, + ``foo(arg1, arg2, kw1='bar')`` + +Continuous integration will run the flake8 tool to check for conformance with +PEP8. Therefore, it is beneficial to run the check yourself before submitting +a pull request:: + + git diff master --name-only -- '*.py' | flake8 --diff + +.. _PEP8: http://www.python.org/dev/peps/pep-0008/ + +Test-driven development +----------------------- +All new features and added functionality will require new tests or amendments +to existing tests, so we highly recommend that all contributors embrace +`test-driven development (TDD)`_. + +.. _`test-driven development (TDD)`: http://en.wikipedia.org/wiki/Test-driven_development + +All tests should go to the ``tests`` subdirectory. We suggest looking to any of +the examples in that directory to get ideas on how to write tests for the +code that you are adding or modifying. + +*DGP* uses the unittest_ framework for unit testing and coverage.py_ to gauge the +effectiveness of tests by showing which parts of the code are being executed +by tests, and which are not. + +.. _unittest: https://docs.python.org/3/library/unittest.html +.. _coverage.py: https://coverage.readthedocs.io/en/coverage-4.4.1/ + +Running the test suite +++++++++++++++++++++++ +The test suite can be run from the repository root:: + + coverage run --source=dgp -m unittest discover + +Use ``coverage report`` to report the results on test coverage:: + + $ coverage report -m + Name Stmts Miss Cover Missing + -------------------------------------------------------------- + dgp/__init__.py 0 0 100% + dgp/lib/__init__.py 0 0 100% + dgp/lib/etc.py 6 0 100% + dgp/lib/gravity_ingestor.py 94 0 100% + dgp/lib/time_utils.py 52 3 94% 131-136 + dgp/lib/trajectory_ingestor.py 50 8 84% 62-65, 93-94, 100-101, 106 + -------------------------------------------------------------- + TOTAL 202 11 95% + +Documentation +------------- +The documentation is written in reStructuredText and built using Sphinx. Some +other things to know about the docs: + +- It consists of two parts: the docstrings in the code and the docs in this folder. + + Docstrings provide a clear explanation of the usage of the individual functions, + while the documentation in this folder consists of tutorials, planning, and + technical documents related data formats, sensors, and processing techniques. + +- The docstrings in this project follow the `NumPy docstring standard`_. + This standard specifies the format of the different sections of the docstring. + See `this document`_ for a detailed explanation and examples. + +.. _`NumPy docstring standard`: https://github.com/numpy/numpy/blob/master/doc/HOWTO_DOCUMENT.rst.txt#docstring-standard +.. _`this document`: http://sphinxcontrib-napoleon.readthedocs.io/en/latest/example_numpy.html + +Building the documentation +++++++++++++++++++++++++++ +Navigate to the ``dgp/docs`` directory in the console. On Linux and MacOS X run:: + + make html + +or on Windows run:: + + make.bat + +If the build completes without errors, then you will find the HTML output in +``dgp/docs/build/html``. diff --git a/docs/source/index.rst b/docs/source/index.rst index 83ef737..85d797c 100644 --- a/docs/source/index.rst +++ b/docs/source/index.rst @@ -9,9 +9,10 @@ Welcome to Dynamic Gravity Processor's documentation! .. toctree:: :maxdepth: 2 :caption: Contents: - + modules dgp.lib + contributing From 29beebc9657eac5fe529b51eb3f29042316fad60 Mon Sep 17 00:00:00 2001 From: Zac Brady Date: Tue, 19 Sep 2017 15:07:21 -0600 Subject: [PATCH 015/236] Feature/eotvos (#24) * Fixed and tested Eotvos function. Tests are successful on the limited set of data, need to test fully on a larger dataset and results generated using Daniel's MATLAB routines. * CLN: Code refactoring and clean up in eotvos code. * TST: Update test_eotvos and tested locally with full data file. Renamed test files for test_eotvos. Eotvos function was tested locally against a data/result set generated with MATLAB (~200k lines), a smaller sample will be generated and uploaded later as the full dataset is unwieldly to run unittests against, and the file size is inconveniently large. ENH: Debugging implementation of eotvos to plot GPS CLN: Add specific function to plot 3 main graphs TST: Added basic test to flight for gps and eotvos. Added testing to test_project to test flight import and processing of eotvos data via .eotvos property. Briefly tested eotvos plotting functionality with gps data imported. Exception handling needs to be added to deal with bad file inputs. ENH: Add Eotvos plotting to main flight plots. Fixed Flight.eotvos property to correctly call and calculate eotvos correction, and to return a DataFrame indexed by the input GPS index. Eotvos is then plotted on the 3rd horizontal plot in the main window. --- dgp/gui/dialogs.py | 26 +++- dgp/gui/loader.py | 2 +- dgp/gui/main.py | 108 ++++++++----- dgp/gui/ui/add_flight_dialog.ui | 17 ++- dgp/gui/ui/main_window.ui | 2 +- dgp/gui/ui/project_dialog.ui | 21 ++- dgp/gui/ui/splash_screen.ui | 53 ++++++- dgp/lib/eotvos.py | 177 +++++++++++++--------- dgp/lib/plotter.py | 9 +- dgp/lib/project.py | 20 ++- tests/__init__.py | 3 + tests/sample_data/eotvos_short_input.txt | 101 ++++++++++++ tests/sample_data/eotvos_short_result.csv | 101 ++++++++++++ tests/test_eotvos.py | 45 +++++- tests/test_project.py | 28 +++- 15 files changed, 579 insertions(+), 134 deletions(-) create mode 100644 tests/sample_data/eotvos_short_input.txt create mode 100644 tests/sample_data/eotvos_short_result.csv diff --git a/dgp/gui/dialogs.py b/dgp/gui/dialogs.py index 5d01924..5a3047a 100644 --- a/dgp/gui/dialogs.py +++ b/dgp/gui/dialogs.py @@ -1,6 +1,7 @@ # coding: utf-8 import os +import logging import functools import datetime import pathlib @@ -11,6 +12,7 @@ import dgp.lib.project as prj from dgp.gui.models import TableModel +from dgp.gui.utils import ConsoleHandler, LOG_COLOR_MAP data_dialog, _ = loadUiType('dgp/gui/ui/data_import_dialog.ui') @@ -165,8 +167,17 @@ class CreateProject(QtWidgets.QDialog, project_dialog): def __init__(self, *args): super().__init__(*args) self.setupUi(self) + + # TODO: Abstract this to a base dialog class so that it can be easily implemented in all dialogs + self.log = logging.getLogger(__name__) + error_handler = ConsoleHandler(self.write_error) + error_handler.setFormatter(logging.Formatter('%(levelname)s: %(message)s')) + error_handler.setLevel(logging.DEBUG) + self.log.addHandler(error_handler) + self.prj_create.clicked.connect(self.create_project) self.prj_browse.clicked.connect(self.select_dir) + self.prj_desktop.clicked.connect(self._select_desktop) self._project = None @@ -177,6 +188,10 @@ def __init__(self, *args): dgs_marine = Qt.QListWidgetItem(Qt.QIcon(':images/assets/boat_icon.png'), 'DGS Marine', self.prj_type_list) dgs_marine.setData(QtCore.Qt.UserRole, 'dgs_marine') + def write_error(self, msg, level=None) -> None: + self.label_required.setText(msg) + self.label_required.setStyleSheet('color: {}'.format(LOG_COLOR_MAP[level])) + def create_project(self): """ Called upon 'Create' button push, do some basic validation of fields then @@ -193,11 +208,10 @@ def create_project(self): else: self.__getattribute__(required_fields[attr]).setStyleSheet('color: black') - if not os.path.isdir(self.prj_dir.text()): + if not pathlib.Path(self.prj_dir.text()).exists(): invalid_input = True self.label_dir.setStyleSheet('color: red') - self.label_required.setText("Invalid Directory") - self.label_required.setStyleSheet('color: red') + self.log.error("Invalid Directory") if invalid_input: return @@ -210,11 +224,15 @@ def create_project(self): self._project = prj.AirborneProject(path, name, self.prj_description.toPlainText().rstrip()) else: - self.label_required.setText('Invalid project type (Not Implemented)') + self.log.error("Invalid Project Type (Not Implemented)") return self.accept() + def _select_desktop(self): + path = pathlib.Path().home().joinpath('Desktop') + self.prj_dir.setText(str(path)) + def select_dir(self): path = QtWidgets.QFileDialog.getExistingDirectory(self, "Select Project Parent Directory") if path: diff --git a/dgp/gui/loader.py b/dgp/gui/loader.py index 3f1317a..8acf2cf 100644 --- a/dgp/gui/loader.py +++ b/dgp/gui/loader.py @@ -24,7 +24,7 @@ def __init__(self, path: pathlib.Path, datatype: str, flight_id: str, parent=Non def run(self): if self._dtype == 'gps': - fields = ['mdy', 'hms', 'lat', 'long', 'ell_ht', 'ortho_ht', 'num_sats', 'pdop'] + fields = ['mdy', 'hms', 'lat', 'long', 'ortho_ht', 'ell_ht', 'num_sats', 'pdop'] df = self._functor(self._path, columns=fields, skiprows=1, timeformat='hms') else: df = self._functor(self._path) diff --git a/dgp/gui/main.py b/dgp/gui/main.py index eb8c51a..0ea14e3 100644 --- a/dgp/gui/main.py +++ b/dgp/gui/main.py @@ -126,7 +126,6 @@ def __init__(self, project: prj.GravityProject=None, *args): def load(self): self._init_plots() self._init_slots() - # self.update_project(signal_flight=True) self.project_tree.refresh() self.setWindowState(QtCore.Qt.WindowMaximized) self.save_project() @@ -157,9 +156,10 @@ def _init_plots(self) -> None: self.flight_plots[flight.uid] = plot, widget self.gravity_stack.addWidget(widget) - gravity = flight.gravity - if gravity is not None: - self.plot_gravity(plot, gravity, {0: 'gravity', 1: ['long', 'cross']}) + # gravity = flight.gravity + self.log.debug("Plotting using plot_flight_main method") + self.plot_flight_main(plot, flight) + self.log.debug("Initialized Flight Plot: {}".format(plot)) self.status.emit('Flight Plot {} Initialized'.format(flight.name)) self.progress.emit(i+1) @@ -221,17 +221,6 @@ def create_actions(self): def flight_info(self): self.log.info("Printing info about the selected flight: {}".format(self.current_flight)) - # Experimental - def set_progress_bar(self, value=100, progress=None): - if progress is None: - progress = QtWidgets.QProgressBar() - progress.setValue(value) - self.statusBar().addWidget(progress) - else: - progress.setValue(value) - - return progress - def set_logging_level(self, name: str): """PyQt Slot: Changes logging level to passed string logging level name.""" self.log.debug("Changing logging level to: {}".format(name)) @@ -306,47 +295,79 @@ def flight_changed(self, index: QtCore.QModelIndex) -> None: self.log.error("No plot for this flight found.") return - # TODO: Move this (and gps plot) into separate functions - # so we can call this on app startup to pre-plot everything - if flight.gravity is not None: - if not grav_plot.plotted: - self.plot_gravity(grav_plot, flight.gravity, {0: 'gravity', 1: ['long', 'cross']}) + if not grav_plot.plotted: + self.plot_flight_main(grav_plot, flight) + return + + def redraw(self, flt_id: str) -> None: + """ + Redraw the main flight plot (gravity, cross/long, eotvos) for the specific flight. - if flight.gps is not None: - self.log.debug("Flight has GPS Data") + Parameters + ---------- + flt_id : str + Flight uuid of flight to replot. - def redraw(self, flt_id: str): + Returns + ------- + None + """ plot, _ = self.flight_plots[flt_id] flt = self.project.get_flight(flt_id) # type: prj.Flight - self.plot_gravity(plot, flt.gravity, {0: 'gravity', 1: ['long', 'cross']}) + self.plot_flight_main(plot, flt) + + def plot_flight_main(self, plot: LineGrabPlot, flight: prj.Flight) -> None: + """ + Plot a flight on the main plot area as a time series, displaying gravity, long/cross and eotvos + By default, expects a plot with 3 subplots accesible via getattr notation. + Gravity channel will be plotted on subplot 0 + Long and Cross channels will be plotted on subplot 1 + Eotvos Correction channel will be plotted on subplot 2 + After plotting, call the plot.draw() to set plot.plotted to true, and draw the figure. + + Parameters + ---------- + plot : LineGrabPlot + LineGrabPlot object used to draw the plot on + flight : prj.Flight + Flight object with related Gravity and GPS properties to plot + + Returns + ------- + None + """ + grav_series = flight.gravity + eotvos_series = flight.eotvos + if grav_series is not None: + plot.plot2(plot[0], grav_series['gravity']) + plot.plot2(plot[1], grav_series['cross']) + plot.plot2(plot[1], grav_series['long']) + if eotvos_series is not None: + plot.plot2(plot[2], eotvos_series['eotvos']) + plot.draw() @staticmethod - def plot_gravity(plot: LineGrabPlot, data: DataFrame, fields: Dict): + def plot_time_series(plot: LineGrabPlot, data: DataFrame, fields: Dict): plot.clear() for index in fields: if isinstance(fields[index], str): series = data.get(fields[index]) # type: Series - # plot.plot(plot[index], series.index, series.values, label=series.name) plot.plot2(plot[index], series) continue for field in fields[index]: series = data.get(field) # type: Series - # plot.plot(plot[index], series.index, series.values, label=series.name) plot.plot2(plot[index], series) plot.draw() plot.plotted = True - @staticmethod - def plot_gps(plot: LineGrabPlot, data: DataFrame, fields: Dict): - pass - def progress_dialog(self, title, min=0, max=1): - prg = QtWidgets.QProgressDialog(title, "Cancel", min, max, self) - prg.setModal(True) - prg.setMinimumDuration(0) - prg.setCancelButton(None) - prg.setValue(0) - return prg + dialog = QtWidgets.QProgressDialog(title, "Cancel", min, max, self) + dialog.setWindowTitle("Loading...") + dialog.setModal(True) + dialog.setMinimumDuration(0) + dialog.setCancelButton(None) + dialog.setValue(0) + return dialog def import_data(self, path: pathlib.Path, dtype: str, flight: prj.Flight): self.log.info("Importing <{dtype}> from: Path({path}) into ".format(dtype=dtype, path=str(path), @@ -428,7 +449,7 @@ def add_flight_dialog(self) -> None: if dialog.gps: self.import_data(dialog.gps, 'gps', flight) - plot, widget = self._new_plot_widget(flight.name, rows=2) + plot, widget = self._new_plot_widget(flight.name, rows=3) self.gravity_stack.addWidget(widget) self.flight_plots[flight.uid] = plot, widget self.project_tree.refresh(curr_flightid=flight.uid) @@ -553,17 +574,26 @@ def generate_airborne_model(self, project: prj.AirborneProject): return model, first_index def contextMenuEvent(self, event: QtGui.QContextMenuEvent, *args, **kwargs): - context_ind = self.indexAt(event.pos()) + context_ind = self.indexAt(event.pos()) # get the index of the item under the click event context_focus = self.model().itemFromIndex(context_ind) info_slot = functools.partial(self.flight_info, context_focus) + plot_slot = functools.partial(self.flight_plot, context_focus) menu = QtWidgets.QMenu() info_action = QtWidgets.QAction("Info") info_action.triggered.connect(info_slot) + plot_action = QtWidgets.QAction("Plot in new window") + plot_action.triggered.connect(plot_slot) + menu.addAction(info_action) + menu.addAction(plot_action) menu.exec_(event.globalPos()) event.accept() + def flight_plot(self, item): + print("Opening new plot for item") + pass + def flight_info(self, item): data = item.data(QtCore.Qt.UserRole) if not (isinstance(data, prj.Flight) or isinstance(data, prj.GravityProject)): diff --git a/dgp/gui/ui/add_flight_dialog.ui b/dgp/gui/ui/add_flight_dialog.ui index 63ac114..7415ee4 100644 --- a/dgp/gui/ui/add_flight_dialog.ui +++ b/dgp/gui/ui/add_flight_dialog.ui @@ -95,7 +95,7 @@ - + Gravity Data @@ -105,7 +105,7 @@ - + @@ -142,6 +142,12 @@ 0 + + Browse + + + Browse + ... @@ -150,7 +156,7 @@ - + GPS Data @@ -160,7 +166,7 @@ - + @@ -197,6 +203,9 @@ 0 + + Browse + ... diff --git a/dgp/gui/ui/main_window.ui b/dgp/gui/ui/main_window.ui index 39df0a7..7f83268 100644 --- a/dgp/gui/ui/main_window.ui +++ b/dgp/gui/ui/main_window.ui @@ -49,7 +49,7 @@ - 1 + 0 diff --git a/dgp/gui/ui/project_dialog.ui b/dgp/gui/ui/project_dialog.ui index bb882cb..05033e4 100644 --- a/dgp/gui/ui/project_dialog.ui +++ b/dgp/gui/ui/project_dialog.ui @@ -123,11 +123,28 @@ 16777215 + + Browse + ... + + + + Select Desktop Folder + + + + + + + :/images/assets/folder_open.png:/images/assets/folder_open.png + + + @@ -257,7 +274,9 @@ prj_create prj_type_list - + + + prj_cancel diff --git a/dgp/gui/ui/splash_screen.ui b/dgp/gui/ui/splash_screen.ui index 03d4c66..b045b14 100644 --- a/dgp/gui/ui/splash_screen.ui +++ b/dgp/gui/ui/splash_screen.ui @@ -6,8 +6,8 @@ 0 0 - 600 - 500 + 604 + 561 @@ -52,10 +52,53 @@ - - - Open Recent Project: + + + + + + true + + false + + + + 0 + + + 0 + + + 0 + + + + + + 2 + 0 + + + + Open Recent Project: + + + + + + + + 100 + 0 + + + + Clear Recent + + + + diff --git a/dgp/lib/eotvos.py b/dgp/lib/eotvos.py index b6ab49e..c8a0042 100644 --- a/dgp/lib/eotvos.py +++ b/dgp/lib/eotvos.py @@ -1,10 +1,12 @@ # coding: utf-8 +# This file is part of DynamicGravityProcessor (https://github.com/DynamicGravitySystems/DGP). +# License is Apache v2 import numpy as np from numpy import array -def derivative(y: array, datarate, n=None): +def derivative(y: array, datarate, edge_order=None): """ Based on Matlab function 'd' Created by Sandra Martinka, August 2001 Function to numerically estimate the nth time derivative of y @@ -13,98 +15,124 @@ def derivative(y: array, datarate, n=None): :param y: Array input :param datarate: Scalar data sampling rate in Hz - :param n: nth time derivative 1, 2 or None. If None return tuple of first and second order time derivatives + :param edge_order: nth time derivative 1, 2 or None. If None return tuple of first and second order time derivatives :return: nth time derivative of y """ - if n is None: + if edge_order is None: d1 = derivative(y, 1, datarate) d2 = derivative(y, 2, datarate) return d1, d2 - if n == 1: - dy = (y[3:] - y[1:-2]) * (datarate / 2) + if edge_order == 1: + dy = (y[2:] - y[0:-2]) * (datarate / 2) return dy - elif n == 2: - dy = ((y[1:-2] - 2 * y[2:-1]) + y[3:]) * (np.power(datarate, 2)) + elif edge_order == 2: + dy = ((y[0:-2] - 2 * y[1:-1]) + y[2:]) * (np.power(datarate, 2)) return dy else: return ValueError('Invalid value for parameter n {1 or 2}') -# TODO: Need sample input to test -def calc_eotvos(lat: array, lon: array, ht: array, datarate: float, a=None, ecc=None): +def calc_eotvos(lat: array, lon: array, ht: array, datarate: float, derivation_func=derivative, + **kwargs): """ - Based on Matlab function 'calc_eotvos_full Created by Sandra Preaux, NGS, NOAA August 24, 2009 - - Usage: - + calc_eotvos: Calculate Eotvos Gravity Corrections - References: - Harlan 1968, "Eotvos Corrections for Airborne Gravimetry" JGR 73,n14 + Based on Matlab function 'calc_eotvos_full Created by Sandra Preaux, NGS, NOAA August 24, 2009 - :param lat: Array geodetic latitude in decimal degrees - :param lon: Array longitude in decimal degrees - :param ht: ellipsoidal height in meters - :param datarate: Scalar data rate in Hz - :param a: Scalar semi-major axis of ellipsoid in meters - :param ecc: Scalar eccentricity of ellipsoid - :return: Tuple Eotvos values in mgals - (rdoubledot, angular acceleration of the ref frame, coriolis, centrifugal, centrifugal acceleration of earth) + References + ---------- + Harlan 1968, "Eotvos Corrections for Airborne Gravimetry" JGR 73,n14 + + Parameters + ---------- + lat : Array + Array of geodetic latitude in decimal degrees + lon : Array + Array of longitude in decimal degrees + ht : Array + Array of ellipsoidal height in meters + datarate : Float (Scalar) + Scalar data rate in Hz + derivation_func : Callable (Array, Scalar, Int) + Callable function used to calculate first and second order time derivatives. + kwargs + a : float + Specify semi-major axis + ecc : float + Eccentricity + + Returns + ------- + 6-Tuple (Array, ...) + Eotvos values in mgals + Tuple(E: Array, rdoubledot, angular acc of ref frame, coriolis, centrifugal, centrifugal acc of earth) """ + # eotvos.derivative function trims the ends of the input by 1, so we need to apply bound to + # some arrays + if derivation_func is not np.gradient: + bounds = slice(1, -1) + else: + bounds = slice(None, None, None) + # Constants - # TODO: Allow a and ecc to be specified in kwargs - a = 6378137.0 # Default semi-major axis + # a = 6378137.0 # Default semi-major axis + a = kwargs.get('a', 6378137.0) # Default semi-major axis b = 6356752.3142 # Default semi-minor axis - ecc = (a - b) / a # Eccentricity (eq 5 Harlan) + ecc = kwargs.get('ecc', (a - b) / a) # Eccentricity + We = 0.00007292115 # sidereal rotation rate, radians/sec mps2mgal = 100000 # m/s/s to mgal # Convert lat/lon in degrees to radians - rad_lat = np.deg2rad(lat) - rad_lon = np.deg2rad(lon) + lat = np.deg2rad(lat) + lon = np.deg2rad(lon) - dlat, ddlat = derivative(rad_lat, datarate) - dlon, ddlon = derivative(rad_lon, datarate) - dht, ddht = derivative(ht, datarate) + dlat = derivation_func(lat, datarate, edge_order=1) + ddlat = derivation_func(lat, datarate, edge_order=2) + dlon = derivation_func(lon, datarate, edge_order=1) + ddlon = derivation_func(lon, datarate, edge_order=2) + dht = derivation_func(ht, datarate, edge_order=1) + ddht = derivation_func(ht, datarate, edge_order=2) # Calculate sin(lat), cos(lat), sin(2*lat), and cos(2*lat) - # Beware MATLAB uses an array index starting with one (1), whereas python uses zero indexed arrays - sin_lat = np.sin(rad_lat[1:-1]) - cos_lat = np.cos(rad_lat[1:-1]) - sin_2lat = np.sin(2 * rad_lat[1:-1]) - cos_2lat = np.cos(2 * rad_lat[1:-1]) + sin_lat = np.sin(lat[bounds]) + cos_lat = np.cos(lat[bounds]) + sin_2lat = np.sin(2.0 * lat[bounds]) + cos_2lat = np.cos(2.0 * lat[bounds]) # Calculate the r' and its derivatives - r_prime = a * (1-ecc * sin_lat * sin_lat) - dr_prime = a * dlat * ecc * sin_2lat - ddr_prime = None + r_prime = a * (1.0-ecc * sin_lat * sin_lat) + dr_prime = -a * dlat * ecc * sin_2lat + ddr_prime = -a * ddlat * ecc * sin_2lat - 2.0 * a * dlat * dlat * ecc * cos_2lat # Calculate the deviation from the normal and its derivatives D = np.arctan(ecc * sin_2lat) dD = 2.0 * dlat * ecc * cos_2lat ddD = 2.0 * ddlat * ecc * cos_2lat - 4.0 * dlat * dlat * ecc * sin_2lat + # Calculate this value once (used many times) + sinD = np.sin(D) + cosD = np.cos(D) # Calculate r and its derivatives r = array([ - -r_prime * np.sin(D), - np.zeros(r_prime.shape), - -r_prime * np.cos(D)-ht[1:-1] + -r_prime * sinD, + np.zeros(r_prime.size), + -r_prime * cosD-ht[bounds] ]) rdot = array([ - -dr_prime * np.sin(D) - r_prime * dD * np.cos(D), - np.zeros(r_prime.shape), - -dr_prime * np.cos(D) + r_prime * dD * np.sin(D) - dht + (-dr_prime * sinD - r_prime * dD * cosD), + np.zeros(r_prime.size), + (-dr_prime * cosD + r_prime * dD * sinD - dht) ]) - # ci=(-ddrp.*sin(D)-2.0.*drp.*dD.*cos(D)-rp.*(ddD.*cos(D)-dD.*dD.*sin(D))); - ci = (-ddr_prime * np.sin(D) - 2.0 * dr_prime * dD * np.cos(D) - r_prime * - (ddD * np.cos(D) - dD * dD * np.sin(D))) - # ck = (-ddrp. * cos(D) + 2.0. * drp. * dD. * sin(D) + rp. * (ddD. * sin(D) + dD. * dD. * cos(D)) - ddht); - ck = (-ddr_prime * np.cos(D) + 2.0 * dr_prime * dD * np.sin(D) + r_prime * - (ddD * np.sin(D) + dD * dD * np.cos(D)) - ddht) + ci = (-ddr_prime * sinD - 2.0 * dr_prime * dD * cosD - r_prime * + (ddD * cosD - dD * dD * sinD)) + ck = (-ddr_prime * cosD + 2.0 * dr_prime * dD * sinD + r_prime * + (ddD * sinD + dD * dD * cosD) - ddht) r2dot = array([ ci, - np.zeros(ci.shape), + np.zeros(ci.size), ck ]) @@ -112,43 +140,44 @@ def calc_eotvos(lat: array, lon: array, ht: array, datarate: float, a=None, ecc= w = array([ (dlon + We) * cos_lat, -dlat, - -(dlon + We) * sin_lat + (-(dlon + We)) * sin_lat ]) wdot = array([ dlon * cos_lat - (dlon + We) * dlat * sin_lat, -ddlat, (-ddlon * sin_lat - (dlon + We) * dlat * cos_lat) ]) - w2_x_rdot = np.cross(2.0 * w, rdot) - wdot_x_r = np.cross(wdot, r) - w_x_r = np.cross(w, r) - wxwxr = np.cross(w, w_x_r) - - # Calculate wexwexre (that is the centrifugal acceleration due to the earth - re = array([ - -r_prime * np.sin(D), - np.zeros(r_prime.shape), - -r_prime * np.cos(D) - ]) + w2_x_rdot = np.cross(2.0 * w, rdot, axis=0) + wdot_x_r = np.cross(wdot, r, axis=0) + w_x_r = np.cross(w, r, axis=0) + wxwxr = np.cross(w, w_x_r, axis=0) + + # Calculate wexwexre (which is the centrifugal acceleration due to the earth) + # not currently used: + # re = array([ + # -r_prime * sinD, + # np.zeros(r_prime.size), + # -r_prime * cosD + # ]) we = array([ We * cos_lat, np.zeros(sin_lat.shape), -We * sin_lat ]) - we_x_re = np.cross(we, re) - wexwexre = np.cross(we, we_x_re) - we_x_r = np.cross(we, r) - wexwexr = np.cross(we, we_x_r) + # wexre = np.cross(we, re, axis=0) # not currently used + # wexwexre = np.cross(we, wexre, axis=0) # not currently used + wexr = np.cross(we, r, axis=0) + wexwexr = np.cross(we, wexr, axis=0) # Calculate total acceleration for the aircraft acc = r2dot + w2_x_rdot + wdot_x_r + wxwxr # Eotvos correction is the vertical component of the total acceleration of # the aircraft - the centrifugal acceleration of the earth, converted to mgal - E = (acc[3,:] - wexwexr[3,:]) * mps2mgal - # TODO: Pad the start/end due to loss during derivative computation - return E + E = (acc[2] - wexwexr[2]) * mps2mgal + if derivation_func is not np.gradient: + E = np.pad(E, (1, 1), 'edge') - # Final Return 5-Tuple - eotvos = (r2dot, w2_x_rdot, wdot_x_r, wxwxr, wexwexr) - return eotvos + # Return Eotvos corrections + return E + # return E, r2dot, w2_x_rdot, wdot_x_r, wxwxr, wexwexr diff --git a/dgp/lib/plotter.py b/dgp/lib/plotter.py index 1aa3abd..cbaada3 100644 --- a/dgp/lib/plotter.py +++ b/dgp/lib/plotter.py @@ -60,6 +60,7 @@ def generate_subplots(self, rows: int) -> None: sp = self.figure.add_subplot(rows, 1, i + 1, sharex=self._axes[0]) # type: Axes sp.grid(True) + sp.get_xaxis().set_major_formatter(DateFormatter('%H:%M:%S')) sp.name = 'Axes {}'.format(i) # sp.callbacks.connect('xlim_changed', set_x_formatter) self._axes.append(sp) @@ -111,6 +112,10 @@ def __init__(self, n=1, title=None, parent=None): if title: self.figure.suptitle(title, y=1) + def draw(self): + self.plotted = True + super().draw() + def clear(self): self._lines = {} self.resample = slice(None, None, 20) @@ -118,6 +123,7 @@ def clear(self): ax.cla() ax.grid(True) # Reconnect the xlim_changed callback after clearing + ax.get_xaxis().set_major_formatter(DateFormatter('%H:%M:%S')) ax.callbacks.connect('xlim_changed', self._on_xlim_changed) self.draw() @@ -128,7 +134,6 @@ def onclick(self, event: MouseEvent): # Check that the click event happened within one of the subplot axes if event.inaxes not in self._axes: return - print("Xdata: {}".format(event.xdata)) self.log.info("Xdata: {}".format(event.xdata)) caxes = event.inaxes # type: Axes @@ -284,8 +289,8 @@ def _on_xlim_changed(self, changed: Axes): ax.draw_artist(line[0]) print("Resampling to: {}".format(self.resample)) ax.relim() + ax.get_xaxis().set_major_formatter(DateFormatter('%H:%M:%S')) self.figure.canvas.draw() - # ax.get_xaxis().set_major_formatter(DateFormatter('%H:%M:%S')) def get_toolbar(self, parent=None) -> QtWidgets.QToolBar: """ diff --git a/dgp/lib/project.py b/dgp/lib/project.py index cb1c207..fa0d53a 100644 --- a/dgp/lib/project.py +++ b/dgp/lib/project.py @@ -6,10 +6,11 @@ import pathlib import logging -from pandas import HDFStore, DataFrame +from pandas import HDFStore, DataFrame, Series from dgp.lib.meterconfig import MeterConfig, AT1Meter from dgp.lib.types import Location, StillReading, FlightLine, DataPacket +import dgp.lib.eotvos as eov """ Dynamic Gravity Processor (DGP) :: project.py @@ -355,6 +356,23 @@ def gravity_file(self): except KeyError: return None, None + @property + def eotvos(self): + if self.gps is None: + return None + gps_data = self.gps + # WARNING: It is vital to use the .values of the pandas Series, otherwise the eotvos func + # does not work properly for some reason + # TODO: Find out why that is ^ + index = gps_data['lat'].index + lat = gps_data['lat'].values + lon = gps_data['long'].values + ht = gps_data['ell_ht'].values + rate = 10 + ev_corr = eov.calc_eotvos(lat, lon, ht, rate) + ev_frame = DataFrame(ev_corr, index=index, columns=['eotvos']) + return ev_frame + def get_channel_data(self, channel): return self.gravity[channel] diff --git a/tests/__init__.py b/tests/__init__.py index e69de29..f11a9e7 100644 --- a/tests/__init__.py +++ b/tests/__init__.py @@ -0,0 +1,3 @@ +import pathlib + +sample_dir = pathlib.Path('tests/sample_data') diff --git a/tests/sample_data/eotvos_short_input.txt b/tests/sample_data/eotvos_short_input.txt new file mode 100644 index 0000000..1e7eb04 --- /dev/null +++ b/tests/sample_data/eotvos_short_input.txt @@ -0,0 +1,101 @@ +GPS Date,GPS Time, Lattitude, Longitude, Orthometric Heigth,Elipsoidal Height,Num of satelites,PDOP + 9/14/2017,15:38:39.00, 39.9148595446,-105.057988972, 1615.999, 1599.197, 0, 0.00 + 9/14/2017,15:38:39.10, 39.9148599142,-105.057988301, 1615.991, 1599.190, 0, 0.00 + 9/14/2017,15:38:39.20, 39.9148607753,-105.057986737, 1615.973, 1599.172, 0, 0.00 + 9/14/2017,15:38:39.30, 39.9148614843,-105.057985449, 1615.958, 1599.157, 0, 0.00 + 9/14/2017,15:38:39.40, 39.9148617500,-105.057984967, 1615.953, 1599.152, 0, 0.00 + 9/14/2017,15:38:39.50, 39.9148617748,-105.057984922, 1615.953, 1599.151, 0, 0.00 + 9/14/2017,15:38:39.60, 39.9148617748,-105.057984922, 1615.953, 1599.151, 0, 0.00 + 9/14/2017,15:38:39.70, 39.9148617748,-105.057984922, 1615.953, 1599.151, 0, 0.00 + 9/14/2017,15:38:39.80, 39.9148618286,-105.057984811, 1615.952, 1599.151, 0, 0.00 + 9/14/2017,15:38:39.90, 39.9148619529,-105.057984553, 1615.951, 1599.150, 0, 0.00 + 9/14/2017,15:38:40.00, 39.9148620900,-105.057984268, 1615.951, 1599.149, 0, 0.00 + 9/14/2017,15:38:40.10, 39.9148622338,-105.057983967, 1615.950, 1599.148, 0, 0.00 + 9/14/2017,15:38:40.20, 39.9148623765,-105.057983668, 1615.949, 1599.148, 0, 0.00 + 9/14/2017,15:38:40.30, 39.9148624276,-105.057983561, 1615.949, 1599.147, 0, 0.00 + 9/14/2017,15:38:40.40, 39.9148624276,-105.057983561, 1615.949, 1599.147, 0, 0.00 + 9/14/2017,15:38:40.50, 39.9148624276,-105.057983561, 1615.949, 1599.147, 0, 0.00 + 9/14/2017,15:38:40.60, 39.9148624276,-105.057983561, 1615.949, 1599.147, 0, 0.00 + 9/14/2017,15:38:40.70, 39.9148624277,-105.057983561, 1615.949, 1599.147, 0, 0.00 + 9/14/2017,15:38:40.80, 39.9148624277,-105.057983561, 1615.949, 1599.147, 0, 0.00 + 9/14/2017,15:38:40.90, 39.9148624277,-105.057983561, 1615.949, 1599.147, 0, 0.00 + 9/14/2017,15:38:41.00, 39.9148624277,-105.057983561, 1615.949, 1599.147, 0, 0.00 + 9/14/2017,15:38:41.10, 39.9148624277,-105.057983561, 1615.949, 1599.147, 0, 0.00 + 9/14/2017,15:38:41.20, 39.9148624276,-105.057983561, 1615.949, 1599.147, 0, 0.00 + 9/14/2017,15:38:41.30, 39.9148624276,-105.057983561, 1615.949, 1599.147, 0, 0.00 + 9/14/2017,15:38:41.40, 39.9148624276,-105.057983561, 1615.949, 1599.147, 0, 0.00 + 9/14/2017,15:38:41.50, 39.9148624276,-105.057983561, 1615.949, 1599.147, 0, 0.00 + 9/14/2017,15:38:41.60, 39.9148624276,-105.057983561, 1615.949, 1599.147, 0, 0.00 + 9/14/2017,15:38:41.70, 39.9148624276,-105.057983561, 1615.949, 1599.147, 0, 0.00 + 9/14/2017,15:38:41.80, 39.9148624277,-105.057983561, 1615.949, 1599.147, 0, 0.00 + 9/14/2017,15:38:41.90, 39.9148624277,-105.057983561, 1615.949, 1599.147, 0, 0.00 + 9/14/2017,15:38:42.00, 39.9148624276,-105.057983561, 1615.949, 1599.147, 0, 0.00 + 9/14/2017,15:38:42.10, 39.9148624276,-105.057983561, 1615.949, 1599.147, 0, 0.00 + 9/14/2017,15:38:42.20, 39.9148624276,-105.057983561, 1615.949, 1599.147, 0, 0.00 + 9/14/2017,15:38:42.30, 39.9148624275,-105.057983561, 1615.949, 1599.147, 0, 0.00 + 9/14/2017,15:38:42.40, 39.9148624275,-105.057983561, 1615.949, 1599.147, 0, 0.00 + 9/14/2017,15:38:42.50, 39.9148624275,-105.057983561, 1615.949, 1599.147, 0, 0.00 + 9/14/2017,15:38:42.60, 39.9148624275,-105.057983561, 1615.949, 1599.147, 0, 0.00 + 9/14/2017,15:38:42.70, 39.9148624276,-105.057983561, 1615.949, 1599.147, 0, 0.00 + 9/14/2017,15:38:42.80, 39.9148624276,-105.057983561, 1615.949, 1599.147, 0, 0.00 + 9/14/2017,15:38:42.90, 39.9148624276,-105.057983561, 1615.949, 1599.147, 0, 0.00 + 9/14/2017,15:38:43.00, 39.9148624276,-105.057983561, 1615.949, 1599.147, 0, 0.00 + 9/14/2017,15:38:43.10, 39.9148624276,-105.057983561, 1615.949, 1599.147, 0, 0.00 + 9/14/2017,15:38:43.20, 39.9148624275,-105.057983561, 1615.949, 1599.147, 0, 0.00 + 9/14/2017,15:38:43.30, 39.9148624275,-105.057983561, 1615.949, 1599.147, 0, 0.00 + 9/14/2017,15:38:43.40, 39.9148624275,-105.057983561, 1615.949, 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1599.147, 0, 0.00 + 9/14/2017,15:38:48.30, 39.9148624272,-105.057983561, 1615.949, 1599.147, 0, 0.00 + 9/14/2017,15:38:48.40, 39.9148624272,-105.057983561, 1615.949, 1599.147, 0, 0.00 + 9/14/2017,15:38:48.50, 39.9148624272,-105.057983561, 1615.949, 1599.147, 0, 0.00 + 9/14/2017,15:38:48.60, 39.9148624272,-105.057983561, 1615.949, 1599.147, 0, 0.00 + 9/14/2017,15:38:48.70, 39.9148624272,-105.057983561, 1615.949, 1599.147, 0, 0.00 + 9/14/2017,15:38:48.80, 39.9148624273,-105.057983561, 1615.949, 1599.147, 0, 0.00 + 9/14/2017,15:38:48.90, 39.9148624273,-105.057983561, 1615.949, 1599.147, 0, 0.00 \ No newline at end of file diff --git a/tests/sample_data/eotvos_short_result.csv b/tests/sample_data/eotvos_short_result.csv new file mode 100644 index 0000000..d3ab8d7 --- /dev/null +++ b/tests/sample_data/eotvos_short_result.csv @@ -0,0 +1,101 @@ +Longitude,latitude,Elipsoidal h,Eotvos_full +-105.057989,39.91485954,1599.197,110015.3395 +-105.0579883,39.91485991,1599.19,110015.3395 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+-105.0579836,39.91486243,1599.147,0 +-105.0579836,39.91486243,1599.147,0.00094152 +-105.0579836,39.91486243,1599.147,-0.00094152 +-105.0579836,39.91486243,1599.147,0 diff --git a/tests/test_eotvos.py b/tests/test_eotvos.py index 6f48bdd..ddcf834 100644 --- a/tests/test_eotvos.py +++ b/tests/test_eotvos.py @@ -3,14 +3,57 @@ import os import unittest import numpy as np +import csv from .context import dgp +from tests import sample_dir import dgp.lib.eotvos as eotvos +import dgp.lib.trajectory_ingestor as ti class TestEotvos(unittest.TestCase): + """Test Eotvos correction calculation.""" def setUp(self): pass + @unittest.skip("test_derivative not implemented.") def test_derivative(self): - pass + """Test derivation function against table of values calculated in MATLAB""" + dlat = [] + ddlat = [] + dlon = [] + ddlon = [] + dht = [] + ddht = [] + # with sample_dir.joinpath('result_derivative.csv').open() as fd: + # reader = csv.DictReader(fd) + # dlat = list(map(lambda line: dlat.append(line['dlat']), reader)) + + def test_eotvos(self): + """Test Eotvos function against corrections generated with MATLAB program.""" + # Ensure gps_fields are ordered correctly relative to test file + gps_fields = ['mdy', 'hms', 'lat', 'long', 'ortho_ht', 'ell_ht', 'num_stats', 'pdop'] + data = ti.import_trajectory('tests/sample_data/eotvos_short_input.txt', columns=gps_fields, skiprows=1, + timeformat='hms') + + result_eotvos = [] + with sample_dir.joinpath('eotvos_short_result.csv').open() as fd: + test_data = csv.DictReader(fd) + for line in test_data: + result_eotvos.append(float(line['Eotvos_full'])) + lat = data['lat'].values + lon = data['long'].values + ht = data['ell_ht'].values + rate = 10 + + eotvos_a = eotvos.calc_eotvos(lat, lon, ht, rate, derivation_func=eotvos.derivative) + # eotvos_b = eotvos.calc_eotvos(lat, lon, ht, rate, derivation_func=np.gradient) + # print(eotvos_a) + # print(eotvos_b) + + for i, value in enumerate(eotvos_a): + try: + self.assertAlmostEqual(value, result_eotvos[i], places=2) + except AssertionError: + print("Invalid assertion at data line: {}".format(i)) + raise AssertionError diff --git a/tests/test_project.py b/tests/test_project.py index 0fe8664..4245932 100644 --- a/tests/test_project.py +++ b/tests/test_project.py @@ -7,6 +7,7 @@ from .context import dgp from dgp.lib.gravity_ingestor import read_at1a +from dgp.lib.trajectory_ingestor import import_trajectory from dgp.lib.project import * from dgp.lib.meterconfig import * @@ -96,7 +97,32 @@ def test_associate_flight_data(self): class TestFlight(unittest.TestCase): def setUp(self): - pass + self._trj_data_path = 'tests/sample_data/eotvos_short_input.txt' + + + def test_flight_gps(self): + td = tempfile.TemporaryDirectory() + hdf_temp = Path(str(td.name)).joinpath('hdf5.h5') + prj = AirborneProject(Path(str(td.name)), 'test') + prj.hdf_path = hdf_temp + flight = Flight(prj, 'testflt') + prj.add_flight(flight) + self.assertEqual(len(prj.flights), 1) + gps_fields = ['mdy', 'hms', 'lat', 'long', 'ortho_ht', 'ell_ht', 'num_stats', 'pdop'] + traj_data =import_trajectory(self._trj_data_path, columns=gps_fields, skiprows=1, + timeformat='hms') + dp = DataPacket(traj_data, self._trj_data_path, 'gps') + + prj.add_data(dp, flight.uid) + print(flight.gps_file) + self.assertTrue(flight.gps is not None) + self.assertTrue(flight.eotvos is not None) + # TODO: Line by line comparison of eotvos data from flight + + try: + td.cleanup() + except OSError: + print("error") class TestMeterconfig(unittest.TestCase): From 9e95a3d703313aa9f628f05e3e2e462250fc7a4b Mon Sep 17 00:00:00 2001 From: bradyzp Date: Sun, 24 Sep 2017 21:38:56 -0600 Subject: [PATCH 016/236] ENH: Rewrite of project tree view base model to allow advanced control. Work in Progress: model base for project tree view rewritten to allow fine grained control over display and retrieval of data. Also integrating model into the base object representation, allowing for dynamic editing of the underlying data structure via the model. TST: Fix tests due to project model updates ENH: Add type-checking to Container class in project. Fix dependent function calls after implementing new ProjectModel model. ENH/CLN: Change flight lines storage, improve TreeView Changed FlightLine storage to use a Container in the Flight class. Moved gen_uuid from Flight class to dgp.lib.etc as a general function that can generate a uuid4 with an optional prefix (keeping the resultant string at len == 32). BUG: Bugfixes in new code to merge back into gui-development. Fix various references and bugs due to new View/Models code, and side effects in project.py. Tree Model should now have equivalent functionality to original implementation, but with the ability to dynamically add/remove objects from their various containers without the need to completely regenerate the view model. BUG: Fix issue plotting datetime index in new plot method --- dgp/gui/dialogs.py | 5 +- dgp/gui/loader.py | 12 +- dgp/gui/main.py | 49 +++-- dgp/gui/models.py | 306 ++++++++++++++++++++++++++- dgp/lib/etc.py | 22 ++ dgp/lib/meterconfig.py | 35 +++- dgp/lib/plotter.py | 21 +- dgp/lib/project.py | 345 +++++++++++++++++++++++-------- dgp/lib/types.py | 73 ++++++- docs/project.py UML Diagram.vsdx | Bin 0 -> 48235 bytes examples/example_projectmodel.py | 63 ++++++ examples/treeview.ui | 24 +++ tests/test_project.py | 21 +- 13 files changed, 832 insertions(+), 144 deletions(-) create mode 100644 docs/project.py UML Diagram.vsdx create mode 100644 examples/example_projectmodel.py create mode 100644 examples/treeview.ui diff --git a/dgp/gui/dialogs.py b/dgp/gui/dialogs.py index 5a3047a..014dd16 100644 --- a/dgp/gui/dialogs.py +++ b/dgp/gui/dialogs.py @@ -13,6 +13,7 @@ import dgp.lib.project as prj from dgp.gui.models import TableModel from dgp.gui.utils import ConsoleHandler, LOG_COLOR_MAP +from dgp.lib.etc import gen_uuid data_dialog, _ = loadUiType('dgp/gui/ui/data_import_dialog.ui') @@ -55,7 +56,7 @@ def __init__(self, project: prj.AirborneProject=None, flight: prj.Flight=None, * self.dtype = None self.flight = flight - for flight in project: + for flight in project.flights: # TODO: Change dict index to human readable value self.combo_flights.addItem(flight.name, flight.uid) if flight == self.flight: # scroll to this item if it matches self.flight @@ -122,7 +123,7 @@ def __init__(self, project, *args): self.browse_gravity.clicked.connect(functools.partial(self.browse, field=self.path_gravity)) self.browse_gps.clicked.connect(functools.partial(self.browse, field=self.path_gps)) self.date_flight.setDate(datetime.datetime.today()) - self._uid = prj.Flight.generate_uuid() + self._uid = gen_uuid('f') self.text_uuid.setText(self._uid) self.params_model = TableModel(['Key', 'Start Value', 'End Value'], editable=[1, 2]) diff --git a/dgp/gui/loader.py b/dgp/gui/loader.py index 8acf2cf..7ac8f88 100644 --- a/dgp/gui/loader.py +++ b/dgp/gui/loader.py @@ -3,17 +3,18 @@ import pathlib from pandas import DataFrame -from PyQt5.QtCore import QObject, pyqtSignal, pyqtSlot, QThread, pyqtBoundSignal +from PyQt5.QtCore import pyqtSignal, QThread, pyqtBoundSignal -from dgp.lib.types import DataPacket from dgp.lib.gravity_ingestor import read_at1a from dgp.lib.trajectory_ingestor import import_trajectory class LoadFile(QThread): + """Defines a QThread object whose job is to load (potentially large) datafiles in a Thread.""" progress = pyqtSignal(int) # type: pyqtBoundSignal loaded = pyqtSignal() # type: pyqtBoundSignal - data = pyqtSignal(DataPacket) # type: pyqtBoundSignal + # data = pyqtSignal(DataPacket) # type: pyqtBoundSignal + data = pyqtSignal(DataFrame, pathlib.Path, str) def __init__(self, path: pathlib.Path, datatype: str, flight_id: str, parent=None, **kwargs): super().__init__(parent) @@ -28,7 +29,8 @@ def run(self): df = self._functor(self._path, columns=fields, skiprows=1, timeformat='hms') else: df = self._functor(self._path) - data = DataPacket(df, self._path, self._dtype) + # data = DataPacket(df, self._path, self._dtype) self.progress.emit(1) - self.data.emit(data) + # self.data.emit(data) + self.data.emit(df, self._path, self._dtype) self.loaded.emit() diff --git a/dgp/gui/main.py b/dgp/gui/main.py index 0ea14e3..2dd4cdf 100644 --- a/dgp/gui/main.py +++ b/dgp/gui/main.py @@ -17,7 +17,7 @@ from dgp.lib.plotter import LineGrabPlot from dgp.gui.utils import ConsoleHandler, LOG_FORMAT, get_project_file from dgp.gui.dialogs import ImportData, AddFlight, CreateProject, InfoDialog -from dgp.gui.models import TableModel +from dgp.gui.models import TableModel, ProjectModel # Load .ui form main_window, _ = loadUiType('dgp/gui/ui/main_window.ui') @@ -59,6 +59,8 @@ def __init__(self, project: prj.GravityProject=None, *args): # Setup Project self.project = project + # Experimental: use the _model to affect changes to the project. + self._model = ProjectModel(project) # See http://doc.qt.io/qt-5/stylesheet-examples.html#customizing-qtreeview # Set Stylesheet customizations for GUI Window @@ -126,7 +128,8 @@ def __init__(self, project: prj.GravityProject=None, *args): def load(self): self._init_plots() self._init_slots() - self.project_tree.refresh() + # self.update_project(signal_flight=True) + # self.project_tree.refresh() self.setWindowState(QtCore.Qt.WindowMaximized) self.save_project() self.show() @@ -146,9 +149,7 @@ def _init_plots(self) -> None: None """ self.progress.emit(0) - if self.project is None: - return - for i, flight in enumerate(self.project): # type: int, prj.Flight + for i, flight in enumerate(self.project.flights): # type: int, prj.Flight if flight.uid in self.flight_plots: continue @@ -265,7 +266,8 @@ def flight_changed(self, index: QtCore.QModelIndex) -> None: """ self.tree_index = index - qitem = self.project_tree.model().itemFromIndex(index) # type: QtGui.QStandardItem + # qitem = self.project_tree.model().itemFromIndex(index) # type: QtGui.QStandardItem + qitem = index.internalPointer() if qitem is None: return qitem_data = qitem.data(QtCore.Qt.UserRole) @@ -378,13 +380,13 @@ def import_data(self, path: pathlib.Path, dtype: str, flight: prj.Flight): # Curry functions to execute on thread completion. add_data = functools.partial(self.project.add_data, flight_uid=flight.uid) - tree_refresh = functools.partial(self.project_tree.refresh, curr_flightid=flight.uid) + # tree_refresh = functools.partial(self.project_tree.refresh, curr_flightid=flight.uid) redraw_flt = functools.partial(self.redraw, flight.uid) prog = self.progress_dialog("Loading", 0, 0) loader.data.connect(add_data) loader.progress.connect(prog.setValue) - loader.loaded.connect(tree_refresh) + # loader.loaded.connect(tree_refresh) loader.loaded.connect(redraw_flt) loader.loaded.connect(self.save_project) loader.loaded.connect(prog.close) @@ -452,7 +454,7 @@ def add_flight_dialog(self) -> None: plot, widget = self._new_plot_widget(flight.name, rows=3) self.gravity_stack.addWidget(widget) self.flight_plots[flight.uid] = plot, widget - self.project_tree.refresh(curr_flightid=flight.uid) + # self.project_tree.refresh(curr_flightid=flight.uid) return def save_project(self) -> None: @@ -480,24 +482,27 @@ def __init__(self, project=None, parent=None): self.setAutoExpandDelay(1) self.setRootIsDecorated(False) self.setUniformRowHeights(True) - self.setHeaderHidden(True) + # self.setHeaderHidden(True) self.setObjectName('project_tree') self.setContextMenuPolicy(QtCore.Qt.DefaultContextMenu) - self.refresh() - # self.setModel(model) - # self.expandAll() + self._init_model() - def refresh(self, curr_index=None, curr_flightid=None): - """Regenerate model and set current selection to curr_index""" - model, index = self.generate_airborne_model(self._project) + def _init_model(self): + model = ProjectModel(self._project) + model.rowsAboutToBeInserted.connect(self.begin_insert) + model.rowsInserted.connect(self.end_insert) self.setModel(model) - if curr_index is not None: - index = curr_index - elif curr_flightid is not None: - index = self._indexes[curr_flightid] + self.expandAll() + + def begin_insert(self, index, start, end): + print("Inserting rows: {}, {}".format(start, end)) - self.setCurrentIndex(index) - self.clicked.emit(index) + def end_insert(self, index, start, end): + print("Finixhed inserting rows, running update") + # index is parent index + model = self.model() + uindex = model.index(row=start-1, parent=index) + self.update(uindex) self.expandAll() def generate_airborne_model(self, project: prj.AirborneProject): diff --git a/dgp/gui/models.py b/dgp/gui/models.py index d308014..2d2bd67 100644 --- a/dgp/gui/models.py +++ b/dgp/gui/models.py @@ -2,7 +2,14 @@ """Provide definitions of the models used by the Qt Application in our model/view widgets.""" +from typing import List, Union + from PyQt5 import QtCore +from PyQt5.QtCore import QModelIndex, QVariant, Qt +from PyQt5.QtGui import QIcon + +from dgp.lib.types import TreeItem +from dgp.lib.project import Container, AirborneProject, Flight, MeterConfig class TableModel(QtCore.QAbstractTableModel): @@ -50,7 +57,7 @@ def rowCount(self, parent=None, *args, **kwargs): def columnCount(self, parent=None, *args, **kwargs): return len(self._cols) - def data(self, index: QtCore.QModelIndex, role=None): + def data(self, index: QModelIndex, role=None): if role == QtCore.Qt.DisplayRole: try: return self._rows[index.row()][index.column()] @@ -58,10 +65,11 @@ def data(self, index: QtCore.QModelIndex, role=None): return None return QtCore.QVariant() - def flags(self, index: QtCore.QModelIndex): + def flags(self, index: QModelIndex): flags = QtCore.Qt.ItemIsSelectable | QtCore.Qt.ItemIsEnabled - if self._editable is not None and index.column() in self._editable: # Allow the values column to be edited + # Allow the values column to be edited + if self._editable is not None and index.column() in self._editable: flags = flags | QtCore.Qt.ItemIsEditable return flags @@ -80,3 +88,295 @@ def setData(self, index: QtCore.QModelIndex, value: QtCore.QVariant, role=None): return True else: return False + + +class ProjectItem: + """ + ProjectItem is a wrapper for TreeItem descendants and/or simple string values, providing the necesarry interface to + be utilized as an item in an AbstractModel (specifically ProjectModel, but theoretically any class derived from + QAbstractItemModel). + Items passed to this class are evaluated, if they are subclassed from TreeItem or an instance of ProjectItem their + children (if any) will be wrapped (if not already) in a ProjectItem instance, and added as a child of this + ProjectItem, allowing the creation of a nested tree type heirarchy. + Due to the inspection of 'item's for children, this makes it effortless to create a tree from a single 'trunk', as + the descendant (children) objects of a passed object that has children, will be automatically populated into the + first ProjectItem's descendant list. + If a supplied item does not have children, i.e. it is a string or other Python type, it will be stored internally, + accessible via the 'object' property, and will be displayed to any QtView (e.g. QTreeView, QListView) as the + string representation of the item, i.e. str(item), whatever that shall produce. + """ + def __init__(self, item: Union['ProjectItem', TreeItem, str], parent: Union['ProjectItem', None]=None) -> None: + """ + Initialize a ProjectItem for use in a Qt View. + Parameters + ---------- + item : Union[ProjectItem, TreeItem, str] + An item to encapsulate for presentation within a Qt View (e.g. QTreeView) + ProjectItem's and TreeItem's support the data(role) method, and as such the presentation of such objects can + be more finely controlled in the implementation of the object itself. + Other objects e.g. strings are simply displayed as is, or if an unsupported object is passed, the str() of + the object is used as the display value. + parent : Union[ProjectItem, None] + The parent ProjectItem, (or None if this is the root object in a view) for this item. + """ + self._parent = parent + self._children = [] + self._object = item + # _hasdata records whether the item is a class of ProjectItem or TreeItem, and thus has a data() method. + self._hasdata = True + + if not issubclass(item.__class__, TreeItem) or isinstance(item, ProjectItem): + self._hasdata = False + if not hasattr(item, 'children'): + return + for child in item.children: + self.append_child(child) + + @property + def children(self): + """Return generator for children of this ProjectItem""" + for child in self._children: + yield child + + @property + def object(self) -> TreeItem: + """Return the underlying class wrapped by this ProjectItem i.e. Flight""" + return self._object + + def append_child(self, child) -> bool: + """ + Appends a child object to this ProjectItem. If the passed child is already an instance of ProjectItem, the + parent is updated to this object, and it is appended to the internal _children list. + If the object is not an instance of ProjectItem, we attempt to encapsulated it, passing self as the parent, and + append it to the _children list. + Parameters + ---------- + child + + Returns + ------- + bool: + True on success + Raises + ------ + TBD Exception on error + """ + if not isinstance(child, ProjectItem): + self._children.append(ProjectItem(child, self)) + return True + child._parent = self + self._children.append(child) + return True + + def remove_child(self, child): + """ + Attempts to remove a child object from the children of this ProjectItem + Parameters + ---------- + child: Union[TreeItem, str] + The underlying object of a ProjectItem object. The ProjectItem that wraps 'child' will be determined by + comparing the uid of the 'child' to the uid's of any object contained within the children of this + ProjectItem. + Returns + ------- + bool: + True on sucess + False if the child cannot be located within the children of this ProjectItem. + + """ + for subitem in self._children[:]: # type: ProjectItem + if subitem.object.uid == child.uid: + print("removing subitem: {}".format(subitem)) + self._children.remove(subitem) + return True + return False + + def child(self, row) -> Union['ProjectItem', None]: + """Return the child ProjectItem at the given row, or None if the index does not exist.""" + try: + return self._children[row] + except IndexError: + return None + + def indexof(self, child): + if isinstance(child, ProjectItem): + return self._children.index(child) + for item in self._children: + if item.object.uid == child.uid: + return self._children.index(item) + + def child_count(self): + return len(self._children) + + @staticmethod + def column_count(): + return 1 + + def data(self, role=None): + # Allow the object to handle data display for certain roles + if role in [QtCore.Qt.ToolTipRole, QtCore.Qt.DisplayRole, QtCore.Qt.UserRole]: + if not self._hasdata: + return str(self._object) + return self._object.data(role) + elif role == QtCore.Qt.DecorationRole: + if not self._hasdata: + return QVariant() + icon = self._object.data(role) + if icon is None: + return QVariant() + if not isinstance(icon, QIcon): + # print("Creating QIcon") + return QIcon(icon) + return icon + else: + return QVariant() # This is very important, otherwise the display gets screwed up. + + def row(self): + """Reports this item's row location within parent's children list""" + if self._parent: + return self._parent.indexof(self) + return 0 + + def parent_item(self): + return self._parent + + +# ProjectModel should eventually have methods to make changes to the underlying data structure, e.g. +# adding a flight, which would then update the model, without rebuilding the entire structure as +# is currently done. +# TODO: Can we inherit from AirborneProject, to create a single interface for modifying, and displaying the project? +class ProjectModel(QtCore.QAbstractItemModel): + def __init__(self, project, parent=None): + super().__init__(parent=parent) + self._root_item = ProjectItem(project) + self._project = project + self._project.parent = self + # Example of what the project structure/tree-view should look like + # TODO: Will the structure contain actual objects (flights, meters etc) or str reprs + # The ProjectItem data() method could retrieve a representation, and allow for powerful + # data manipulations perhaps. + # self.setup_model(project) + + def update(self, action, obj): + if action.lower() == 'add': + self.add_child(obj) + elif action.lower() == 'remove': + self.remove_child(obj) + + def add_child(self, item: Union[Flight, MeterConfig]): + """ + Method to add a generic item of type Flight or MeterConfig to the project and model. + In future add ability to add sub-children, e.g. FlightLines (although possibly in + separate method). + Parameters + ---------- + item : Union[Flight, MeterConfig] + Project Flights/Meters child object to add. + + Returns + ------- + bool: + True on successful addition + False if the method could not add the item, i.e. could not match the container to + insert the item. + Raises + ------ + NotImplementedError: + Raised if item is not an instance of a recognized type, currently Flight or MeterConfig + + """ + for child in self._root_item.children: # type: ProjectItem + c_obj = child.object # type: Container + if isinstance(c_obj, Container) and issubclass(item.__class__, c_obj.ctype): + # print("matched instance in add_child") + cindex = self.createIndex(self._root_item.indexof(child), 1, child) + self.beginInsertRows(cindex, len(c_obj), len(c_obj)) + c_obj.add_child(item) + child.append_child(ProjectItem(item)) + self.endInsertRows() + self.layoutChanged.emit() + return True + print("No match on contianer for object: {}".format(item)) + return False + + def remove_child(self, item): + for wrapper in self._root_item.children: # type: ProjectItem + # Get the internal object representation (within the ProjectItem) + c_obj = wrapper.object # type: Container + if isinstance(c_obj, Container) and c_obj.ctype == item.__class__: + cindex = self.createIndex(self._root_item.indexof(wrapper), 1, wrapper) + self.beginRemoveRows(cindex, wrapper.indexof(item), wrapper.indexof(item)) + c_obj.remove_child(item) + # ProjectItem remove_child accepts a proper object (i.e. not a ProjectItem), and compares the UID + wrapper.remove_child(item) + self.endRemoveRows() + return True + return False + + def setup_model(self, base): + for item in base.children: + self._root_item.append_child(ProjectItem(item, self._root_item)) + + def data(self, index: QModelIndex, role: int=None): + if not index.isValid(): + return QVariant() + + item = index.internalPointer() # type: ProjectItem + if role == QtCore.Qt.UserRole: + return item.object + else: + return item.data(role) + + def itemFromIndex(self, index: QModelIndex): + return index.internalPointer() + + def flags(self, index: QModelIndex): + if not index.isValid(): + return 0 + return QtCore.Qt.ItemIsSelectable | QtCore.Qt.ItemIsEnabled + + def headerData(self, section: int, orientation, role: int=None): + if orientation == QtCore.Qt.Horizontal and role == QtCore.Qt.DisplayRole: + return self._root_item.data(role) + return QVariant() + + def index(self, row: int, column: int=0, parent: QModelIndex=QModelIndex()): + if not self.hasIndex(row, column, parent): + return QModelIndex() + + if not parent.isValid(): + parent_item = self._root_item + else: + parent_item = parent.internalPointer() # type: ProjectItem + child_item = parent_item.child(row) + if child_item: + return self.createIndex(row, column, child_item) + else: + return QModelIndex() + + def parent(self, index: QModelIndex): + if not index.isValid(): + return QModelIndex() + + child_item = index.internalPointer() # type: ProjectItem + parent_item = child_item.parent_item() # type: ProjectItem + if parent_item == self._root_item: + return QModelIndex() + return self.createIndex(parent_item.row(), 0, parent_item) + + def rowCount(self, parent: QModelIndex=QModelIndex(), *args, **kwargs): + if parent.isValid(): + item = parent.internalPointer() # type: ProjectItem + return item.child_count() + else: + return self._root_item.child_count() + + def columnCount(self, parent: QModelIndex=QModelIndex(), *args, **kwargs): + return 1 + + # Highly Experimental: + # Pass on attribute calls to the _project if this class has no such attribute + # Unpickling encounters an error here (RecursionError) + # def __getattr__(self, item): + # return getattr(self._project, item, None) + diff --git a/dgp/lib/etc.py b/dgp/lib/etc.py index 64a86c8..71fa07c 100644 --- a/dgp/lib/etc.py +++ b/dgp/lib/etc.py @@ -1,7 +1,29 @@ +# coding: utf-8 + +import uuid import numpy as np + def interp_nans(y): nans = np.isnan(y) x = lambda z: z.nonzero()[0] y[nans] = np.interp(x(nans), x(~nans), y[~nans]) return y + + +def gen_uuid(prefix: str=''): + """ + Generate a UUID4 String with optional prefix replacing the first len(prefix) characters of the + UUID. + Parameters + ---------- + prefix : [str] + Optional string prefix to be prepended to the generated UUID + + Returns + ------- + str: + UUID String of length 32 + """ + base_uuid = uuid.uuid4().hex + return '{}{}'.format(prefix, base_uuid[len(prefix):]) diff --git a/dgp/lib/meterconfig.py b/dgp/lib/meterconfig.py index 5d5c07d..183c12a 100644 --- a/dgp/lib/meterconfig.py +++ b/dgp/lib/meterconfig.py @@ -1,8 +1,11 @@ # coding: utf-8 import os +import uuid import configparser +from dgp.lib.types import TreeItem + """ Dynamic Gravity Processor (DGP) :: meterconfig.py License: Apache License V2 @@ -15,23 +18,44 @@ """ -class MeterConfig: +class MeterConfig(TreeItem): """ MeterConfig will contain the configuration of a specific gravity meter, giving the - surveyer an easy way to specify the use of different meters on different flight lines. + surveyor an easy way to specify the use of different meters on different flight lines. Initially dealing only with DGS AT1[A/M] meter types, need to add logic to handle other meters later. """ - def __init__(self, name, meter_type='AT1', **config): - # TODO: Consider other meter types, what to do about different config values etc. + def __init__(self, name, meter_type='AT1', parent=None, **config): + # TODO: Consider other meter types, what to do about different config values etc. + self._uid = 'm{}'.format(uuid.uuid4().hex[1:]) + self._parent = parent self.name = name self.type = meter_type self.config = {k.lower(): v for k, v in config.items()} + @property + def parent(self): + return self._parent + + @parent.setter + def parent(self, value): + self._parent = value + @staticmethod def from_ini(path): raise NotImplementedError + @property + def uid(self): + return self._uid + + @property + def children(self): + return [] + + def data(self, role=None): + return "{} <{}>".format(self.name, self.type) + def __getitem__(self, item): """Allow getting of configuration values using container type syntax e.g. value = MeterConfig['key']""" if isinstance(item, slice): @@ -49,6 +73,9 @@ def __setitem__(self, key, value): def __len__(self): return len(self.config) + def __str__(self): + return "Meter {}".format(self.name) + class AT1Meter(MeterConfig): """ diff --git a/dgp/lib/plotter.py b/dgp/lib/plotter.py index cbaada3..978ba07 100644 --- a/dgp/lib/plotter.py +++ b/dgp/lib/plotter.py @@ -60,7 +60,7 @@ def generate_subplots(self, rows: int) -> None: sp = self.figure.add_subplot(rows, 1, i + 1, sharex=self._axes[0]) # type: Axes sp.grid(True) - sp.get_xaxis().set_major_formatter(DateFormatter('%H:%M:%S')) + # sp.get_xaxis().set_major_formatter(DateFormatter('%H:%M:%S')) sp.name = 'Axes {}'.format(i) # sp.callbacks.connect('xlim_changed', set_x_formatter) self._axes.append(sp) @@ -223,21 +223,22 @@ def onrelease(self, event: MouseEvent): self.clicked = None # self.draw() - def plot(self, ax: Axes, xdata, ydata, **kwargs): - if self._lines.get(id(ax), None) is None: - self._lines[id(ax)] = [] - line = ax.plot(xdata, ydata, **kwargs) - self._lines[id(ax)].append((line, xdata, ydata)) - self.timespan = self._timespan(*ax.get_xlim()) - ax.legend() - def plot2(self, ax: Axes, series: Series): if self._lines.get(id(ax), None) is None: self._lines[id(ax)] = [] - sample_series = series[self.resample] + if len(series) > 10000: + sample_series = series[self.resample] + else: + # Don't resample small series + sample_series = series line = ax.plot(sample_series.index, sample_series.values, label=sample_series.name) + ax.xaxis.set_major_formatter(DateFormatter('%H:%M:%S')) + + ax.relim() + ax.autoscale_view() self._lines[id(ax)].append((line, series)) self.timespan = self._timespan(*ax.get_xlim()) + print("Timespan: {}".format(self.timespan)) ax.legend() @staticmethod diff --git a/dgp/lib/project.py b/dgp/lib/project.py index fa0d53a..c92eb64 100644 --- a/dgp/lib/project.py +++ b/dgp/lib/project.py @@ -1,15 +1,16 @@ # coding: utf-8 -import os import uuid import pickle import pathlib import logging +from typing import Union, Type from pandas import HDFStore, DataFrame, Series from dgp.lib.meterconfig import MeterConfig, AT1Meter -from dgp.lib.types import Location, StillReading, FlightLine, DataPacket +from dgp.lib.etc import gen_uuid +from dgp.lib.types import Location, StillReading, FlightLine, TreeItem import dgp.lib.eotvos as eov """ @@ -34,13 +35,22 @@ """ +# QT ItemDataRoles +DisplayRole = 0 +DecorationRole = 1 +ToolTipRole = 3 +StatusTipRole = 4 +UserRole = 256 + def can_pickle(attribute): """Helper function used by __getstate__ to determine if an attribute should be pickled.""" # TODO: As necessary change this to check against a list of un-pickleable types - if isinstance(attribute, logging.Logger): - return False - if isinstance(attribute, DataFrame): + no_pickle = [logging.Logger, DataFrame] + for invalid in no_pickle: + if isinstance(attribute, invalid): + return False + if attribute.__class__.__name__ == 'ProjectModel': return False return True @@ -202,7 +212,7 @@ def load(path: pathlib.Path): return project def __iter__(self): - pass + raise NotImplementedError("Abstract definition, not implemented.") def __getstate__(self): """ @@ -235,7 +245,7 @@ def __setstate__(self, state) -> None: self.log = logging.getLogger(__name__) -class Flight: +class Flight(TreeItem): """ Define a Flight class used to record and associate data with an entire survey flight (takeoff -> landing) This class is iterable, yielding the flightlines named tuple objects from its lines dictionary @@ -270,10 +280,11 @@ def __init__(self, parent: GravityProject, name: str, meter: MeterConfig=None, * """ # If uuid is passed use the value else assign new uuid # the letter 'f' is prepended to the uuid to ensure that we have a natural python name - # as python variables cannot start with a number (this takes care of warning when storing data in pytables) - self.parent = parent + # as python variables cannot start with a number + self._parent = parent self.name = name - self.uid = kwargs.get('uuid', self.generate_uuid()) + self._uid = kwargs.get('uuid', gen_uuid('f')) + self._icon = ':images/assets/flight_icon.png' self.meter = meter if 'date' in kwargs: print("Setting date to: {}".format(kwargs['date'])) @@ -281,7 +292,7 @@ def __init__(self, parent: GravityProject, name: str, meter: MeterConfig=None, * self.log = logging.getLogger(__name__) - # These private attributes will hold a file reference string used to retrieve data from hdf5 store. + # These attributes will hold a file reference string used to retrieve data from hdf5 store. self._gpsdata_uid = None # type: str self._gravdata_uid = None # type: str @@ -297,8 +308,36 @@ def __init__(self, parent: GravityProject, name: str, meter: MeterConfig=None, * self.flight_timeshift = 0 + # TODO: Flight lines will need to become a Container # Flight lines keyed by UUID - self.lines = {} + self.lines = Container(ctype=FlightLine, parent=self, name='Flight Lines') + + @property + def uid(self): + return self._uid + + @property + def parent(self): + return self._parent + + @parent.setter + def parent(self, value): + self._parent = value + + def data(self, role=None): + if role == UserRole: + return self + if role == ToolTipRole: + return repr(self) + if role == DecorationRole: + return self._icon + return self.name + + @property + def children(self): + """Yield appropriate child objects for display in project Tree View""" + for child in [self.lines, self._gpsdata_uid, self._gravdata_uid]: + yield child @property def gps(self): @@ -376,28 +415,13 @@ def eotvos(self): def get_channel_data(self, channel): return self.gravity[channel] - def add_line(self, start: float, end: float): + def add_line(self, start: float, stop: float): """Add a flight line to the flight by start/stop index and sequence number""" - uid = uuid.uuid4().hex - line = FlightLine(uid, len(self.lines), None, start, end) - self.lines[uid] = line + # line = FlightLine(len(self.lines), None, start, end, self) + line = FlightLine(start, stop, len(self.lines), None, self) + self.lines.add_child(line) return line - @staticmethod - def generate_uuid(): - """ - Generates a Universally Unique ID (UUID) using the uuid.uuid4() method, and replaces the first hex digit with - 'f' to ensure the UUID conforms to python's Natural Name convention, simply meaning that the name does not start - with a number, as this raises warnings when using the UUID as a key in a Pandas dataframe or when exporting data - to an HDF5 store. - - Returns - ------- - str - 32 digit hexadecimal string unique identifier where str[0] == 'f' - """ - return 'f{}'.format(uuid.uuid4().hex[1:]) - def __iter__(self): """ Implement class iteration, allowing iteration through FlightLines in this Flight @@ -406,28 +430,19 @@ def __iter__(self): FlightLine : NamedTuple Next FlightLine in Flight.lines """ - for k, line in self.lines.items(): + for line in self.lines: yield line def __len__(self): return len(self.lines) def __repr__(self): - return "".format(parent=self.parent, name=self.name, - meter=self.meter) + return "{cls}({parent}, {name}, {meter})".format(cls=type(self).__name__, + parent=self.parent, name=self.name, + meter=self.meter) def __str__(self): - if self.meter is not None: - mname = self.meter.name - else: - mname = '' - desc = """Flight: {name}\n -UID: {uid} -Meter: {meter} -# Lines: {lines} -Data Files: - """.format(name=self.name, uid=self.uid, meter=mname, lines=len(self)) - return desc + return "Flight: {}".format(self.name) def __getstate__(self): return {k: v for k, v in self.__dict__.items() if can_pickle(v)} @@ -439,88 +454,246 @@ def __setstate__(self, state): self._gpsdata = None -class AirborneProject(GravityProject): +class Container(TreeItem): + ctypes = {Flight, MeterConfig, FlightLine} + + def __init__(self, ctype, parent, *args, **kwargs): + """ + Defines a generic container designed for use with models.ProjectModel, implementing the + required functions to display and contain child objects. + When used/displayed by a TreeView the default behavior is to display the ctype.__name__ + and a tooltip stating "Container for type objects". + + The Container contains only objects of type ctype, or those derived from it. Attempting + to add a child of a different type will simply fail, with the add_child method returning + False. + Parameters + ---------- + ctype : Class + The object type this container will contain as children, permitted classes are: + Flight + FlightLine + MeterConfig + parent + Parent object, e.g. Gravity[Airborne]Project, Flight etc. The container will set the + 'parent' attribute of any children added to the container to this value. + args : [List] + Optional child objects to add to the Container at instantiation + kwargs + Optional key-word arguments. Recognized values: + str name : override the default name of this container (which is _ctype.__name__) + """ + assert ctype in Container.ctypes + # assert parent is not None + self._uid = gen_uuid('c') + self._parent = parent + self._ctype = ctype + self._name = kwargs.get('name', self._ctype.__name__) + self._children = {} + for arg in args: + self.add_child(arg) + + @property + def parent(self): + return self._parent + + @parent.setter + def parent(self, value): + self._parent = value + + @property + def ctype(self): + return self._ctype + + @property + def uid(self): + return self._uid + + @property + def name(self): + return self._name.lower() + + @property + def children(self): + for flight in self._children: + yield self._children[flight] + + def data(self, role=None): + if role == ToolTipRole: + return "Container for {} type objects.".format(self._name) + return self._name + + def child(self, uid): + return self._children[uid] + + def add_child(self, child) -> bool: + """ + Add a child object to the container. + The child object must be an instance of the ctype of the container, otherwise it will be rejected. + Parameters + ---------- + child + Child object of compatible type for this container. + Returns + ------- + bool: + True if add is sucessful + False if add fails (e.g. child is not a valid type for this container) + """ + if not isinstance(child, self._ctype): + return False + if child.uid in self._children: + print("child already exists in container, skipping insert") + return True + try: + child.parent = self._parent + except AttributeError: + # Can't reassign tuple attribute (may change FlightLine to class in future) + pass + self._children[child.uid] = child + return True + + def remove_child(self, child) -> bool: + """ + Remove a child object from the container. + Children are deleted by the uid key, no other comparison is executed. + Parameters + ---------- + child + + Returns + ------- + bool: + True on sucessful deletion of child + False if child.uid could not be retrieved and deleted + """ + try: + del self._children[child.uid] + print("Deleted obj uid: {} from container children".format(child.uid)) + return True + except KeyError: + return False + + def __iter__(self): + for child in self._children.values(): + yield child + + def __len__(self): + return len(self._children) + + def __str__(self): + return self._name + + +class AirborneProject(GravityProject, TreeItem): """ A subclass of the base GravityProject, AirborneProject will define an Airborne survey project with parameters unique to airborne operations, and defining flight lines etc. This class is iterable, yielding the Flight objects contained within its flights dictionary """ - def __init__(self, path, name, description=None): + def __init__(self, path: pathlib.Path, name, description=None, parent=None): super().__init__(path, name, description) + self._parent = parent # Dictionary of Flight objects keyed by the flight uuid - self.flights = {} - self.active = None # type: Flight + self._children = {'flights': Container(ctype=Flight, parent=self), + 'meters': Container(ctype=MeterConfig, parent=self)} self.log.debug("Airborne project initialized") self.data_map = {} - def set_active(self, flight_id): - flight = self.get_flight(flight_id) - self.active = flight + @property + def parent(self): + return self._parent + + @parent.setter + def parent(self, value): + self._parent = value + + @property + def children(self): + for child in self._children: + yield self._children[child] + + @property + def uid(self): + return - def add_data(self, packet: DataPacket, flight_uid: str): + def data(self, role=None): + return "{} :: <{}>".format(self.name, self.projectdir.resolve()) + + # TODO: Move this into the GravityProject base class? + # Although we use flight_uid here, this could be abstracted however. + def add_data(self, df: DataFrame, path: pathlib.Path, dtype: str, flight_uid: str): """ - Add a DataPacket to the project. - The DataPacket is simply a container for a pandas.DataFrame object, containing some additional meta-data that is - used by the project and interface. - Upon adding a DataPacket, the DataFrame is assigned a UUID and together with the data type, is exported to the - projects' HDFStore into a group specified by data type i.e. + Add an imported DataFrame to a specific Flight in the project. + Upon adding a DataFrame a UUID is assigned, and together with the data type it is exported + to the project HDFStore into a group specified by data type i.e. HDFStore.put('data_type/uuid', packet.data) - The data can then be retrieved later from its respective group using its UUID. + The data can then be retrieved from its respective dtype group using the UUID. The UUID is then stored in the Flight class's data variable for the respective data_type. Parameters ---------- - packet : DataPacket(data, path, dtype) - + df : DataFrame + Pandas DataFrame containing file data. + path : pathlib.Path + Original path to data file as a pathlib.Path object. + dtype : str + The data type of the data (df) being added, either gravity or gps. flight_uid : str - + UUID of the Flight the added data will be assigned/associated with. Returns ------- - - """ - """ - Import a DataFrame into the project - :param packet: DataPacket custom class containing file path, dataframe, data type and flight association - :return: Void + bool + True on success, False on failure + Causes of failure: + flight_uid does not exist in self.flights.keys """ self.log.debug("Ingesting data and exporting to hdf5 store") - file_uid = 'f' + uuid.uuid4().hex[1:] # Fixes NaturalNameWarning by ensuring first char is letter ('f'). + # Fixes NaturalNameWarning by ensuring first char is letter ('f'). + file_uid = 'f' + uuid.uuid4().hex[1:] with HDFStore(str(self.hdf_path)) as store: # Separate data into groups by data type (GPS & Gravity Data) # format: 'table' pytables format enables searching/appending, fixed is more performant. - store.put('{}/{}'.format(packet.dtype, file_uid), packet.data, format='fixed', data_columns=True) + store.put('{}/{}'.format(dtype, file_uid), df, format='fixed', data_columns=True) # Store a reference to the original file path - self.data_map[file_uid] = packet.path + self.data_map[file_uid] = path try: - flight = self.flights[flight_uid] - if packet.dtype == 'gravity': + flight = self.get_flight(flight_uid) + if dtype == 'gravity': flight.gravity = file_uid - elif packet.dtype == 'gps': + elif dtype == 'gps': flight.gps = file_uid + return True except KeyError: return False - def add_flight(self, flight: Flight): - self.flights[flight.uid] = flight + def add_flight(self, flight: Flight) -> None: + self._children['flights'].add_child(flight) + if self.parent is not None: + self.parent.update('add', flight) - def get_flight(self, flight_id): - flt = self.flights.get(flight_id, None) - self.log.debug("Found flight {}:{}".format(flt.name, flt.uid)) - return flt + def get_flight(self, uid): + flight = self._children['flights'].child(uid) + return flight - def __iter__(self): - for uid, flight in self.flights.items(): + @property + def flights(self): + for flight in self._children['flights'].children: yield flight + def __iter__(self): + return (i for i in self._children.items()) + def __len__(self): - return len(self.flights) + count = 0 + for child in self._children: + count += len(child) + return count def __str__(self): - return "Project: {name}\nPath: {path}\nDescription: {desc}".format(name=self.name, - path=self.projectdir, - desc=self.description) + return "AirborneProject: {}".format(self.name) diff --git a/dgp/lib/types.py b/dgp/lib/types.py index 871f7b1..8b2c906 100644 --- a/dgp/lib/types.py +++ b/dgp/lib/types.py @@ -1,7 +1,10 @@ # coding: utf-8 +from abc import ABC, abstractmethod from collections import namedtuple +from dgp.lib.etc import gen_uuid + """ Dynamic Gravity Processor (DGP) :: types.py License: Apache License V2 @@ -15,8 +18,74 @@ StillReading = namedtuple('StillReading', ['gravity', 'location', 'time']) -FlightLine = namedtuple('FlightLine', ['id', 'sequence', 'file_ref', 'start', 'end']) +# FlightLine = namedtuple('FlightLine', ['uid', 'sequence', 'file_ref', 'start', 'end', 'parent']) DataCurve = namedtuple('DataCurve', ['channel', 'data']) -DataPacket = namedtuple('DataPacket', ['data', 'path', 'dtype']) +# DataPacket = namedtuple('DataPacket', ['data', 'path', 'dtype']) + + +class TreeItem(ABC): + """Abstract Base Class for an object that can be displayed in a hierarchical 'tree' view.""" + @property + @abstractmethod + def uid(self): + pass + + @property + @abstractmethod + def parent(self): + pass + + @parent.setter + @abstractmethod + def parent(self, value): + pass + + @property + @abstractmethod + def children(self): + pass + + @abstractmethod + def data(self, role=None): + pass + + @abstractmethod + def __str__(self): + pass + + +class FlightLine(TreeItem): + def __init__(self, start, stop, sequence, file_ref, parent=None): + self._uid = gen_uuid('ln') + self.start = start + self.stop = stop + self._file = file_ref # UUID of source file for this line + self._sequence = sequence + self._parent = parent + + @property + def parent(self): + return self._parent + + @parent.setter + def parent(self, value): + self._parent = value + + def data(self, role=None): + if role == 1: # DecorationRole (Icon) + return None + return str(self) + + @property + def uid(self): + return self._uid + + @property + def children(self): + return [] + + def __str__(self): + return 'Line({start},{stop})'.format(start=self.start, stop=self.stop) + diff --git a/docs/project.py UML Diagram.vsdx b/docs/project.py UML Diagram.vsdx new file mode 100644 index 0000000000000000000000000000000000000000..a9b814098ec12e128e89d96032e994b5d887048d GIT binary patch literal 48235 zcmeFYC z;=ALMu_F|ufk99JzyKfs000O9P{dFHiU9!te*b+$27mz461KB-HnDZqQ}M7janhl4 zx3MND00E-N0|5H_{r|cCH}*hd%7kq{1A^#F@;iJ&%P+$`+G5lIQT&M%&@TY$9RH

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zYYhK0#qB4CmHGFWH^0ODnz8;TCi~6rF@NT-|8=K+%~$#pvnTvF=C7Lg^W6U_v-$10 z|24PgPa3@FziEFk|K$8?(68a~|AEl_8}aXx^;^uZVNZWz+>C#Z`7;RWuh#q;*XAc? z&EfZ$Kcn3IiurX~<4+8g|L-w>PICMe^Q)NsC&o4M_n1GW?Z0AvRZ;%Lh{pXM^QWfr zSIn<+te+U+q`xu0inD%Y{5rVxlkp}OB=h|3P}i@FUvHfJWRRBqZO1=uqx@R@-~HU5 zg~7mTEB;}^-@V>ni~qYv@z3HR)&DI1-~Pp~fPXuC{{%49{R8kH*H1wj8s?8}@IcQ2 L(7U+CKR*3GL5I>M literal 0 HcmV?d00001 diff --git a/examples/example_projectmodel.py b/examples/example_projectmodel.py new file mode 100644 index 0000000..60eb759 --- /dev/null +++ b/examples/example_projectmodel.py @@ -0,0 +1,63 @@ +# coding: utf-8 + +import sys + +from dgp import resources_rc + +from PyQt5.uic import loadUiType +from PyQt5.QtWidgets import QDialog, QApplication +from PyQt5.QtCore import QModelIndex, Qt + +from dgp.gui.models import ProjectModel +from dgp.lib.project import AirborneProject, Flight, AT1Meter + +tree_dialog, _ = loadUiType('treeview.ui') + + +"""This module serves as an example implementation and use of a ProjectModel with a QTreeView widget.""" + + +class TreeTest(QDialog, tree_dialog): + def __init__(self, project): + super().__init__() + self.setupUi(self) + self.model = ProjectModel(project, self) + self.model.rowsAboutToBeInserted.connect(self.insert) + self.treeView.doubleClicked.connect(self.dbl_click) + self.treeView.setModel(self.model) + self.show() + + def insert(self, index, start, end): + print("About to insert rows at {}:{}".format(start, end)) + + def dbl_click(self, index: QModelIndex): + obj = self.model.data(index, Qt.UserRole) + print("Obj type: {}, obj: {}".format(type(obj), obj)) + # print(index.internalPointer().internal_pointer) + + +if __name__ == "__main__": + prj = AirborneProject('.', 'TestTree') + prj.add_flight(Flight(prj, 'Test Flight')) + + meter = AT1Meter('AT1M-6', g0=100, CrossCal=250) + + app = QApplication(sys.argv) + dialog = TreeTest(prj) + f3 = Flight(prj, "Test Flight 3") + f3.add_line(0, 250) + f3.add_line(251, 350) + # print("F3: {}".format(f3)) + f3._gpsdata_uid = 'test1235' + dialog.model.add_child(f3) + # print(meter) + dialog.model.add_child(meter) + # print(len(project)) + # for flight in project.flights: + # print(flight) + + prj.add_flight(Flight(None, 'Test Flight 2')) + dialog.model.remove_child(f3) + # dialog.model.remove_child(f3) + sys.exit(app.exec_()) + diff --git a/examples/treeview.ui b/examples/treeview.ui new file mode 100644 index 0000000..1a8237a --- /dev/null +++ b/examples/treeview.ui @@ -0,0 +1,24 @@ + + + Dialog + + + + 0 + 0 + 580 + 481 + + + + Dialog + + + + + + + + + + diff --git a/tests/test_project.py b/tests/test_project.py index 4245932..72b0185 100644 --- a/tests/test_project.py +++ b/tests/test_project.py @@ -61,9 +61,9 @@ def test_pickle_project(self): loaded_project = AirborneProject.load(save_loc) self.assertIsInstance(loaded_project, AirborneProject) - self.assertEqual(len(loaded_project.flights), 1) - self.assertEqual(loaded_project.flights[flight.uid].uid, flight.uid) - self.assertEqual(loaded_project.flights[flight.uid].meter.name, 'AT1A-5') + self.assertEqual(len(list(loaded_project.flights)), 1) + self.assertEqual(loaded_project.get_flight(flight.uid).uid, flight.uid) + self.assertEqual(loaded_project.get_flight(flight.uid).meter.name, 'AT1A-5') def test_flight_iteration(self): test_flight = Flight(None, 'test_flight', self.at1a5) @@ -71,7 +71,7 @@ def test_flight_iteration(self): line1 = test_flight.add_line(210, 350.3) lines = [line0, line1] - for line in test_flight: + for line in test_flight.lines: self.assertTrue(line in lines) # TODO: Fix ImportWarning generated by pytables? @@ -107,14 +107,15 @@ def test_flight_gps(self): prj.hdf_path = hdf_temp flight = Flight(prj, 'testflt') prj.add_flight(flight) - self.assertEqual(len(prj.flights), 1) + self.assertEqual(len(list(prj.flights)), 1) gps_fields = ['mdy', 'hms', 'lat', 'long', 'ortho_ht', 'ell_ht', 'num_stats', 'pdop'] - traj_data =import_trajectory(self._trj_data_path, columns=gps_fields, skiprows=1, - timeformat='hms') - dp = DataPacket(traj_data, self._trj_data_path, 'gps') + traj_data = import_trajectory(self._trj_data_path, columns=gps_fields, skiprows=1, + timeformat='hms') + # dp = DataPacket(traj_data, self._trj_data_path, 'gps') - prj.add_data(dp, flight.uid) - print(flight.gps_file) + prj.add_data(traj_data, self._trj_data_path, 'gps', flight.uid) + # prj.add_data(dp, flight.uid) + # print(flight.gps_file) self.assertTrue(flight.gps is not None) self.assertTrue(flight.eotvos is not None) # TODO: Line by line comparison of eotvos data from flight From cca5be46e91bc4b869378cac0b480f730dc04f01 Mon Sep 17 00:00:00 2001 From: bradyzp Date: Wed, 18 Oct 2017 09:58:56 -0600 Subject: [PATCH 017/236] ENH: Improve plotting functionality in GUI module. --- dgp/gui/dialogs.py | 2 +- dgp/gui/loader.py | 4 ++-- dgp/gui/main.py | 1 + dgp/gui/models.py | 11 ++++++----- dgp/lib/plotter.py | 11 +++++++---- 5 files changed, 17 insertions(+), 12 deletions(-) diff --git a/dgp/gui/dialogs.py b/dgp/gui/dialogs.py index 6cf7c06..320c1be 100644 --- a/dgp/gui/dialogs.py +++ b/dgp/gui/dialogs.py @@ -136,7 +136,7 @@ def __init__(self, project, flight, parent=None): self._path = None self._flight = flight - for flt in project: + for flt in project.flights: self.combo_flights.addItem(flt.name, flt) if flt == self._flight: # scroll to this item if it matches self.flight self.combo_flights.setCurrentIndex(self.combo_flights.count() - 1) diff --git a/dgp/gui/loader.py b/dgp/gui/loader.py index 482640f..18a71e7 100644 --- a/dgp/gui/loader.py +++ b/dgp/gui/loader.py @@ -19,6 +19,7 @@ class LoadFile(QThread): def __init__(self, path: pathlib.Path, datatype: str, flight_id: str, fields: List=None, parent=None, **kwargs): super().__init__(parent) + # TODO: Add type checking to path, ensure it is a pathlib.Path (not str) as the pyqtSignal expects a Path self._path = path self._dtype = datatype self._flight = flight_id @@ -30,10 +31,9 @@ def run(self): df = self._load_gps() else: df = self._load_gravity() - # TODO: Get rid of DataPacket, find way to embed metadata in DataFrame self.progress.emit(1) # self.data.emit(data) - self.data.emit(df, self._path, self._dtype) + self.data.emit(df, pathlib.Path(self._path), self._dtype) self.loaded.emit() def _load_gps(self): diff --git a/dgp/gui/main.py b/dgp/gui/main.py index cb00469..909a245 100644 --- a/dgp/gui/main.py +++ b/dgp/gui/main.py @@ -338,6 +338,7 @@ def plot_flight_main(self, plot: LineGrabPlot, flight: prj.Flight) -> None: ------- None """ + plot.clear() grav_series = flight.gravity eotvos_series = flight.eotvos if grav_series is not None: diff --git a/dgp/gui/models.py b/dgp/gui/models.py index 51110db..8554b15 100644 --- a/dgp/gui/models.py +++ b/dgp/gui/models.py @@ -4,10 +4,11 @@ from typing import List, Union -from PyQt5 import QtCore, QtWidgets, Qt +from PyQt5 import Qt, QtCore from PyQt5.Qt import QWidget, QModelIndex, QAbstractItemModel -from PyQt5.QtCore import QModelIndex, QVariant, Qt +from PyQt5.QtCore import QModelIndex, QVariant from PyQt5.QtGui import QIcon +from PyQt5.QtWidgets import QComboBox from dgp.lib.types import TreeItem from dgp.lib.project import Container, AirborneProject, Flight, MeterConfig @@ -389,13 +390,13 @@ def columnCount(self, parent: QModelIndex=QModelIndex(), *args, **kwargs): # def __getattr__(self, item): # return getattr(self._project, item, None) - +# QStyledItemDelegate class SelectionDelegate(Qt.QStyledItemDelegate): def __init__(self, choices, parent=None): super().__init__(parent=parent) self._choices = choices - def createEditor(self, parent: QWidget, option: QStyleOptionViewItem, index: QModelIndex) -> QWidget: + def createEditor(self, parent: QWidget, option: Qt.QStyleOptionViewItem, index: QModelIndex) -> QWidget: """Creates the editor widget to display in the view""" editor = QComboBox(parent) editor.setFrame(False) @@ -425,7 +426,7 @@ def setModelData(self, editor: QWidget, model: QAbstractItemModel, index: QModel model.setData(mindex, '', QtCore.Qt.EditRole) model.setData(index, value, QtCore.Qt.EditRole) - def updateEditorGeometry(self, editor: QWidget, option: QStyleOptionViewItem, index: QModelIndex) -> None: + def updateEditorGeometry(self, editor: QWidget, option: Qt.QStyleOptionViewItem, index: QModelIndex) -> None: editor.setGeometry(option.rect) diff --git a/dgp/lib/plotter.py b/dgp/lib/plotter.py index b4784f1..009f814 100644 --- a/dgp/lib/plotter.py +++ b/dgp/lib/plotter.py @@ -119,12 +119,15 @@ def draw(self): def clear(self): self._lines = {} self.resample = slice(None, None, 20) + self.draw() for ax in self._axes: # type: Axes - ax.cla() - ax.grid(True) + for line in ax.lines[:]: + ax.lines.remove(line) + # ax.cla() + # ax.grid(True) # Reconnect the xlim_changed callback after clearing - ax.get_xaxis().set_major_formatter(DateFormatter('%H:%M:%S')) - ax.callbacks.connect('xlim_changed', self._on_xlim_changed) + # ax.get_xaxis().set_major_formatter(DateFormatter('%H:%M:%S')) + # ax.callbacks.connect('xlim_changed', self._on_xlim_changed) self.draw() def onclick(self, event: MouseEvent): From 9a6ec54e94adc33d51bbe8e786aa1d860a560fdd Mon Sep 17 00:00:00 2001 From: chris Date: Mon, 23 Oct 2017 06:16:38 +1300 Subject: [PATCH 018/236] Survey lines are now added to the Flight object by clicking in the plot area. - Extents of lines can be changed by stretching from either of the sides and by dragging the box for the line. TO DO: - Finish right-click context menu for removing patches and setting labels. --- dgp/gui/main.py | 22 ++++- dgp/gui/plotting.py | 176 ---------------------------------- dgp/lib/plotter.py | 223 +++++++++++++++++++++++++++++++++----------- dgp/lib/project.py | 9 +- dgp/lib/types.py | 1 - 5 files changed, 189 insertions(+), 242 deletions(-) delete mode 100644 dgp/gui/plotting.py diff --git a/dgp/gui/main.py b/dgp/gui/main.py index 909a245..9531a9d 100644 --- a/dgp/gui/main.py +++ b/dgp/gui/main.py @@ -14,7 +14,7 @@ import dgp.lib.project as prj from dgp.gui.loader import LoadFile -from dgp.lib.plotter import LineGrabPlot +from dgp.lib.plotter import LineGrabPlot, LineUpdate from dgp.gui.utils import ConsoleHandler, LOG_FORMAT, get_project_file from dgp.gui.dialogs import ImportData, AddFlight, CreateProject, InfoDialog, AdvancedImport from dgp.gui.models import TableModel, ProjectModel @@ -66,7 +66,7 @@ def __init__(self, project: prj.GravityProject=None, *args): # Set Stylesheet customizations for GUI Window self.setStyleSheet(""" QTreeView::item { - + } QTreeView::branch:has-siblings:adjoins-them { /*border: 1px solid black; */ @@ -153,7 +153,9 @@ def _init_plots(self) -> None: if flight.uid in self.flight_plots: continue - plot, widget = self._new_plot_widget(flight.name, rows=3) + plot, widget = self._new_plot_widget(flight, rows=3) + # TO DO: Need to disconnect these at some point? + plot.line_changed.connect(self._on_added_line) self.flight_plots[flight.uid] = plot, widget self.gravity_stack.addWidget(widget) @@ -165,9 +167,19 @@ def _init_plots(self) -> None: self.status.emit('Flight Plot {} Initialized'.format(flight.name)) self.progress.emit(i+1) + def _on_added_line(self, info): + for flight in self.project.flights: + if info.flight_id == flight.uid: + flight.add_line(info.start, info.stop) + self.log.debug("Added line: start={start}, stop={stop}, " + "label={label}" + .format(start=info.start, + stop=info.stop, + label=info.label)) + @staticmethod - def _new_plot_widget(title, rows=2): - plot = LineGrabPlot(rows, title=title) + def _new_plot_widget(flight, rows=2): + plot = LineGrabPlot(rows, fid=flight.uid, title=flight.name) plot_toolbar = plot.get_toolbar() layout = QtWidgets.QVBoxLayout() diff --git a/dgp/gui/plotting.py b/dgp/gui/plotting.py deleted file mode 100644 index ed70ec0..0000000 --- a/dgp/gui/plotting.py +++ /dev/null @@ -1,176 +0,0 @@ -import matplotlib as mpl -mpl.use('Qt5Agg') - -import matplotlib.pyplot as plt -from matplotlib.figure import Figure -from matplotlib.dates import DateFormatter, num2date -import matplotlib.patches as patches -import numpy as np -import os - -class Plots: - def __init__(self): - self.rects = [] - self.figure = None - self.axes = [] - self.clicked = None - - def generate_subplots(self, x, *args): - def _on_xlims_change(axes): - # reset the x-axis format when the plot is resized - axes.get_xaxis().set_major_formatter(DateFormatter('%H:%M:%S')) - - i = 0 - numplots = len(args) - fig = plt.figure() - - self.cidclick = fig.canvas.mpl_connect('button_press_event', self.onclick) - self.cidrelease = fig.canvas.mpl_connect('button_release_event', self.onrelease) - self.cidmotion = fig.canvas.mpl_connect('motion_notify_event', self.onmotion) - - for arg in args: - if i == 0: - a = fig.add_subplot(numplots, 1, i+1) - else: - a = fig.add_subplot(numplots, 1, i+1, sharex=self.axes[0]) - - a.plot(x.to_pydatetime(), arg) - a.fmt_xdata = DateFormatter('%H:%M:%S') - a.grid(True) - a.callbacks.connect('xlim_changed', _on_xlims_change) - self.axes.append(a) - i += 1 - - if not mpl.is_interactive(): - fig.show() - - self.figure = fig - plt.show() - - # TO DO: Consider PatchCollection for rectangles. - def onclick(self, event): - # TO DO: Don't place rectangle when zooming. - # TO DO: Resize rectangles when plot extent changes. - - # check if clicked in subplot - for subplot in self.figure.axes: - if event.inaxes == subplot: - break - else: - return - - flag = False - - # don't add rectangle if click on existing rectangle - for partners in self.rects: - # TO DO: Fix logic in this loop. Don't need to loop through all - # partners to determine whether click was in an occupied region, just one. - # Also, use of the flag is a bit kludgy. - - index = 0 - for attr in partners: - rect = attr['rect'] - - # contains, attrd = rect.contains(event) - # if contains: - - if event.xdata > rect.get_x() and event.xdata < rect.get_x() + rect.get_width(): - flag = True - x0, _ = rect.xy - self.clicked = partners, index, x0, event.xdata, event.ydata - - # draw everything but the selected rectangle and store the pixel buffer - canvas = rect.figure.canvas - axes = rect.axes - rect.set_animated(True) - canvas.draw() - attr['bg'] = canvas.copy_from_bbox(axes.bbox) - - # now redraw just the rectangle - axes.draw_artist(rect) - - # and blit just the redrawn area - # canvas.blit(axes.bbox) - - index += 1 - - if flag: - return - - # create rectangle if click in empty area - partners = [] - for subplot in self.figure.axes: - ylim = subplot.get_ylim() - xlim = subplot.get_xlim() - x_extent = (xlim[-1] - xlim[0]) * np.float64(0.1) - - # bottom left corner - x0 = event.xdata - x_extent/2 - y0 = ylim[0] - width = x_extent - height = ylim[-1] - ylim[0] - - r = patches.Rectangle((x0, y0), width, height, alpha=0.1) - attr = {} - attr['rect'] = r - subplot.add_patch(r) - - attr['bg'] = None - partners.append(attr) - - self.rects.append(partners) - # self.rect.figure.canvas.draw() - self.figure.canvas.draw() - - def onmotion(self, event): - # check if pointer is still in subplot - for subplot in self.figure.axes: - if event.inaxes == subplot: - break - else: - return - - if self.clicked is None: - return - else: - self._move_rect(event) - - # def _near_edge(self, event, prox=5): - # for partners in self.rects: - # attr = partners[0] - # left = attr['rect'].get_x() - # right = left + attr['rect'].get_width() - # if ((event.xdata < left and event.xdata > left - prox) or - # (event.xdata > left and event.xdata < left + prox)): - # return ("L", partners) - # elif ((event.xdata < right and event.xdata > right - prox) or - # (event.xdata > right and event.xdata < right + prox)): - # return ("R", partners) - # else: - # return None - - def _move_rect(self, event): - partners, index, x0, xclick, yclick = self.clicked - - # move rectangles - dx = event.xdata - xclick - for attr in partners: - rect = attr['rect'] - rect.set_x(x0 + dx) - canvas = rect.figure.canvas - axes = rect.axes - canvas.restore_region(attr['bg']) - axes.draw_artist(rect) - canvas.blit(axes.bbox) - - def onrelease(self, event): - for partners in self.rects: - for attr in partners: - rect = attr['rect'] - rect.set_animated(False) - attr['bg'] = None - - self.clicked = None - - # redraw the full figure - self.figure.canvas.draw() diff --git a/dgp/lib/plotter.py b/dgp/lib/plotter.py index 009f814..63bcfec 100644 --- a/dgp/lib/plotter.py +++ b/dgp/lib/plotter.py @@ -4,13 +4,17 @@ Class to handle Matplotlib plotting of data to be displayed in Qt GUI """ +from dgp.lib.etc import gen_uuid + import logging import datetime from collections import namedtuple from typing import List, Tuple from PyQt5 import QtWidgets -from PyQt5.QtWidgets import QSizePolicy +from PyQt5.QtWidgets import QSizePolicy, QMenu, QAction +from PyQt5.QtCore import pyqtSignal +from PyQt5.QtGui import QCursor from matplotlib.backends.backend_qt5agg import (FigureCanvasQTAgg as FigureCanvas, NavigationToolbar2QT as NavigationToolbar) from matplotlib.figure import Figure @@ -90,15 +94,18 @@ def __len__(self): return len(self._axes) -ClickInfo = namedtuple('ClickInfo', ['partners', 'x0', 'xpos', 'ypos']) - +ClickInfo = namedtuple('ClickInfo', ['partners', 'x0', 'width', 'xpos', 'ypos']) +LineUpdate = namedtuple('LineUpdate', ['flight_id', 'uid', 'start', 'stop', 'label']) class LineGrabPlot(BasePlottingCanvas): """ LineGrabPlot implements BasePlottingCanvas and provides an onclick method to select flight line segments. """ - def __init__(self, n=1, title=None, parent=None): + + line_changed = pyqtSignal(LineUpdate) + + def __init__(self, n=1, fid=None, title=None, parent=None): BasePlottingCanvas.__init__(self, parent=parent) self.rects = [] self.zooming = False @@ -109,9 +116,22 @@ def __init__(self, n=1, title=None, parent=None): self.timespan = datetime.timedelta(0) self.resample = slice(None, None, 20) self._lines = {} + self._flight_id = fid + if title: self.figure.suptitle(title, y=1) + # internal flags + self._stretching = None + self._is_near_edge = False + + # create context menu + self._pop_menu = QMenu(self) + self._pop_menu.addAction(QAction('Remove', self, triggered=self._remove_patch)) + + def _remove_patch(self): + pass + def draw(self): self.plotted = True super().draw() @@ -143,49 +163,73 @@ def onclick(self, event: MouseEvent): other_axes = [ax for ax in self._axes if ax != caxes] # print("Current axes: {}\nOther axes obj: {}".format(repr(caxes), other_axes)) - for partners in self.rects: - patch = partners[0]['rect'] - if patch.get_x() <= event.xdata <= patch.get_x() + patch.get_width(): - # Then we clicked an existing rectangle - x0, _ = patch.xy - self.clicked = ClickInfo(partners, x0, event.xdata, event.ydata) - - for attrs in partners: - rect = attrs['rect'] - rect.set_animated(True) - r_canvas = rect.figure.canvas - r_axes = rect.axes # type: Axes - r_canvas.draw() - attrs['bg'] = r_canvas.copy_from_bbox(r_axes.bbox) - return - - # else: Create a new rectangle on all axes - ylim = caxes.get_ylim() # type: Tuple - xlim = caxes.get_xlim() # type: Tuple - width = (xlim[1] - xlim[0]) * np.float64(0.01) - # Get the bottom left corner of the rectangle which will be centered at the mouse click - x0 = event.xdata - width/2 - y0 = ylim[0] - height = ylim[1] - ylim[0] - c_rect = Rectangle((x0, y0), width, height*2, alpha=0.1) - - caxes.add_patch(c_rect) - caxes.draw_artist(caxes.patch) - - partners = [{'rect': c_rect, 'bg': None}] - for ax in other_axes: - x0 = event.xdata - width/2 - ylim = ax.get_ylim() + if event.button == 3: + # Right click + for partners in self.rects: + patch = partners[0]['rect'] + if patch.get_x() <= event.xdata <= patch.get_x() + patch.get_width(): + cursor = QCursor() + self._pop_menu.popup(cursor.pos()) + return + + else: + # Left click + for partners in self.rects: + patch = partners[0]['rect'] + if patch.get_x() <= event.xdata <= patch.get_x() + patch.get_width(): + # Then we clicked an existing rectangle + x0, _ = patch.xy + width = patch.get_width() + self.clicked = ClickInfo(partners, x0, width, event.xdata, event.ydata) + self._stretching = self._is_near_edge + + for attrs in partners: + rect = attrs['rect'] + rect.set_animated(True) + r_canvas = rect.figure.canvas + r_axes = rect.axes # type: Axes + r_canvas.draw() + attrs['bg'] = r_canvas.copy_from_bbox(r_axes.bbox) + return + + # else: Create a new rectangle on all axes + ylim = caxes.get_ylim() # type: Tuple + xlim = caxes.get_xlim() # type: Tuple + width = (xlim[1] - xlim[0]) * np.float64(0.05) + # Get the bottom left corner of the rectangle which will be centered at the mouse click + x0 = event.xdata - width / 2 y0 = ylim[0] height = ylim[1] - ylim[0] - a_rect = Rectangle((x0, y0), width, height*2, alpha=0.1) - ax.add_patch(a_rect) - ax.draw_artist(ax.patch) - partners.append({'rect': a_rect, 'bg': None}) + c_rect = Rectangle((x0, y0), width, height*2, alpha=0.1) + + caxes.add_patch(c_rect) + caxes.draw_artist(caxes.patch) + + uid = gen_uuid('ln') + left = num2date(c_rect.get_x()) + right = num2date(c_rect.get_x() + c_rect.get_width()) + partners = [{'uid': uid, 'rect': c_rect, 'bg': None, 'left': left, 'right': right, 'label': None}] + for ax in other_axes: + x0 = event.xdata - width / 2 + ylim = ax.get_ylim() + y0 = ylim[0] + height = ylim[1] - ylim[0] + a_rect = Rectangle((x0, y0), width, height * 2, alpha=0.1) + ax.add_patch(a_rect) + ax.draw_artist(ax.patch) + left = num2date(a_rect.get_x()) + right = num2date(a_rect.get_x() + a_rect.get_width()) + partners.append({'uid': uid, 'rect': a_rect, 'bg': None, 'left': left, + 'right': right, 'label': None}) + + self.rects.append(partners) + + if self._flight_id is not None: + self.line_changed.emit(LineUpdate(self._flight_id, uid, left, right, None)) + + self.figure.canvas.draw() - self.rects.append(partners) - self.figure.canvas.draw() - return + return def toggle_zoom(self): if self.panning: @@ -197,34 +241,101 @@ def toggle_pan(self): self.zooming = False self.panning = not self.panning + def _move_rect(self, event): + partners, x0, width, xclick, yclick = self.clicked + + dx = event.xdata - xclick + for attr in partners: + rect = attr['rect'] + + if self._stretching is not None: + if self._stretching == 'left': + if width - dx > 0: + rect.set_x(x0 + dx) + rect.set_width(width - dx) + elif self._stretching == 'right': + if width + dx > 0: + rect.set_width(width + dx) + else: + rect.set_x(x0 + dx) + + canvas = rect.figure.canvas + axes = rect.axes + canvas.restore_region(attr['bg']) + axes.draw_artist(rect) + canvas.blit(axes.bbox) + + def _near_edge(self, event, prox=0.0005): + for partners in self.rects: + attr = partners[0] + rect = attr['rect'] + + axes = rect.axes + canvas = rect.figure.canvas + + left = rect.get_x() + right = left + rect.get_width() + + if (event.xdata > left and event.xdata < left + prox): + for p in partners: + p['rect'].set_edgecolor('red') + p['rect'].set_linewidth(3) + event.canvas.draw() + return 'left' + + elif (event.xdata < right and event.xdata > right - prox): + for p in partners: + p['rect'].set_edgecolor('red') + p['rect'].set_linewidth(3) + event.canvas.draw() + return 'right' + + else: + if rect.get_linewidth() != 1.0 and self._stretching is None: + for p in partners: + p['rect'].set_edgecolor(None) + p['rect'].set_linewidth(None) + event.canvas.draw() + + return None + def onmotion(self, event: MouseEvent): if event.inaxes not in self._axes: return + if self.clicked is not None: - partners, x0, xclick, yclick = self.clicked - dx = event.xdata - xclick - new_x = x0 + dx - for attrs in partners: - rect = attrs['rect'] # type: Rectangle - rect.set_x(new_x) - canvas = rect.figure.canvas - axes = rect.axes # type: Axes - canvas.restore_region(attrs['bg']) - axes.draw_artist(rect) - canvas.blit(axes.bbox) + self._move_rect(event) + else: + self._is_near_edge = self._near_edge(event) def onrelease(self, event: MouseEvent): if self.clicked is None: return # Nothing Selected + partners = self.clicked.partners for attrs in partners: rect = attrs['rect'] rect.set_animated(False) rect.axes.draw_artist(rect) attrs['bg'] = None + # attrs['left'] = num2date(rect.get_x()) + # attrs['right'] = num2date(rect.get_x() + rect.get_width()) + + uid = partners[0]['uid'] + first_rect = partners[0]['rect'] + start = num2date(first_rect.get_x()) + stop = num2date(first_rect.get_x() + first_rect.get_width()) + label = partners[0]['label'] + + if self._flight_id is not None: + self.line_changed.emit(LineUpdate(self._flight_id, uid, start, stop, label)) self.clicked = None - # self.draw() + + if self._stretching is not None: + self._stretching = None + + self.figure.canvas.draw() def plot2(self, ax: Axes, series: Series): if self._lines.get(id(ax), None) is None: diff --git a/dgp/lib/project.py b/dgp/lib/project.py index c92eb64..dcabd6c 100644 --- a/dgp/lib/project.py +++ b/dgp/lib/project.py @@ -5,6 +5,7 @@ import pathlib import logging from typing import Union, Type +from datetime import datetime from pandas import HDFStore, DataFrame, Series @@ -415,10 +416,10 @@ def eotvos(self): def get_channel_data(self, channel): return self.gravity[channel] - def add_line(self, start: float, stop: float): + def add_line(self, start: datetime, stop: datetime): """Add a flight line to the flight by start/stop index and sequence number""" # line = FlightLine(len(self.lines), None, start, end, self) - line = FlightLine(start, stop, len(self.lines), None, self) + line = FlightLine(start, stop, len(self.lines) + 1, None, self) self.lines.add_child(line) return line @@ -442,7 +443,7 @@ def __repr__(self): meter=self.meter) def __str__(self): - return "Flight: {}".format(self.name) + return "Flight: {name}".format(name=self.name) def __getstate__(self): return {k: v for k, v in self.__dict__.items() if can_pickle(v)} @@ -659,7 +660,7 @@ def add_data(self, df: DataFrame, path: pathlib.Path, dtype: str, flight_uid: st with HDFStore(str(self.hdf_path)) as store: # Separate data into groups by data type (GPS & Gravity Data) # format: 'table' pytables format enables searching/appending, fixed is more performant. - store.put('{}/{}'.format(dtype, file_uid), df, format='fixed', data_columns=True) + store.put('{typ}/{uid}'.format(typ=dtype, uid=file_uid), df, format='fixed', data_columns=True) # Store a reference to the original file path self.data_map[file_uid] = path try: diff --git a/dgp/lib/types.py b/dgp/lib/types.py index 8b2c906..f56d2c1 100644 --- a/dgp/lib/types.py +++ b/dgp/lib/types.py @@ -88,4 +88,3 @@ def children(self): def __str__(self): return 'Line({start},{stop})'.format(start=self.start, stop=self.stop) - From 550a1db411b7a6158ccccefa0de292b01d3b7215 Mon Sep 17 00:00:00 2001 From: chris Date: Wed, 25 Oct 2017 15:01:34 +1300 Subject: [PATCH 019/236] Fixed line selection so that changed lines are differentiated from added lines. --- dgp/gui/main.py | 24 ++++++++++++++++++------ dgp/lib/project.py | 13 ++++++++++--- dgp/lib/types.py | 8 ++++++-- 3 files changed, 34 insertions(+), 11 deletions(-) diff --git a/dgp/gui/main.py b/dgp/gui/main.py index 9531a9d..b2d07af 100644 --- a/dgp/gui/main.py +++ b/dgp/gui/main.py @@ -170,12 +170,24 @@ def _init_plots(self) -> None: def _on_added_line(self, info): for flight in self.project.flights: if info.flight_id == flight.uid: - flight.add_line(info.start, info.stop) - self.log.debug("Added line: start={start}, stop={stop}, " - "label={label}" - .format(start=info.start, - stop=info.stop, - label=info.label)) + print(flight.lines) + if info.uid in flight.lines: + line = flight.lines[info.uid] + line.start = info.start + line.stop = info.stop + line.label = info.label + self.log.debug("Changed line: start={start}, stop={stop}, " + "label={label}" + .format(start=info.start, + stop=info.stop, + label=info.label)) + else: + flight.add_line(info.start, info.stop, uid=info.uid) + self.log.debug("Added line: start={start}, stop={stop}, " + "label={label}" + .format(start=info.start, + stop=info.stop, + label=info.label)) @staticmethod def _new_plot_widget(flight, rows=2): diff --git a/dgp/lib/project.py b/dgp/lib/project.py index dcabd6c..56e0d4c 100644 --- a/dgp/lib/project.py +++ b/dgp/lib/project.py @@ -416,10 +416,10 @@ def eotvos(self): def get_channel_data(self, channel): return self.gravity[channel] - def add_line(self, start: datetime, stop: datetime): + def add_line(self, start: datetime, stop: datetime, uid=None): """Add a flight line to the flight by start/stop index and sequence number""" # line = FlightLine(len(self.lines), None, start, end, self) - line = FlightLine(start, stop, len(self.lines) + 1, None, self) + line = FlightLine(start, stop, len(self.lines) + 1, None, uid=uid, parent=self) self.lines.add_child(line) return line @@ -554,6 +554,12 @@ def add_child(self, child) -> bool: self._children[child.uid] = child return True + def __getitem__(self, key): + return self._children[key] + + def __contains__(self, key): + return key in self._children + def remove_child(self, child) -> bool: """ Remove a child object from the container. @@ -583,7 +589,8 @@ def __len__(self): return len(self._children) def __str__(self): - return self._name + # return self._name + return str(self._children) class AirborneProject(GravityProject, TreeItem): diff --git a/dgp/lib/types.py b/dgp/lib/types.py index f56d2c1..b69cbf7 100644 --- a/dgp/lib/types.py +++ b/dgp/lib/types.py @@ -57,8 +57,12 @@ def __str__(self): class FlightLine(TreeItem): - def __init__(self, start, stop, sequence, file_ref, parent=None): - self._uid = gen_uuid('ln') + def __init__(self, start, stop, sequence, file_ref, uid=None, parent=None): + if uid is None: + self._uid = gen_uuid('ln') + else: + self._uid = uid + self.start = start self.stop = stop self._file = file_ref # UUID of source file for this line From 94aac7b2c60b2674e591f6a72960a3bacbd39d39 Mon Sep 17 00:00:00 2001 From: bradyzp Date: Thu, 26 Oct 2017 10:32:06 -0600 Subject: [PATCH 020/236] BUG: Fix invalid parameter passed upon new flight creation Line 488 in main.py was passing flight.uid to main.py::_new_plot_widget instead of the flight object, causing a runtime error when creating a new flight via the add_flight_dialog method. This has been changed to pass the flight object as an attribute instead of its uid. --- dgp/gui/main.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/dgp/gui/main.py b/dgp/gui/main.py index b2d07af..a1ebda4 100644 --- a/dgp/gui/main.py +++ b/dgp/gui/main.py @@ -485,7 +485,7 @@ def add_flight_dialog(self) -> None: if dialog.gps: self.import_data(dialog.gps, 'gps', flight) - plot, widget = self._new_plot_widget(flight.name, rows=3) + plot, widget = self._new_plot_widget(flight, rows=3) self.gravity_stack.addWidget(widget) self.flight_plots[flight.uid] = plot, widget # self.project_tree.refresh(curr_flightid=flight.uid) From 7831611a8e2a8f7a594c5e0d05d0cacb14ba0641 Mon Sep 17 00:00:00 2001 From: bradyzp Date: Fri, 27 Oct 2017 14:04:29 -0600 Subject: [PATCH 021/236] ENH: Update GUI Tree View to display flight lines. Logic added in models.py to properly handle addition of children and sub-children to the project model. There are still some minor issues to be worked out, i.e. properly displaying the lines in a human-readable way. Also still need to re-draw all lines on the plots when loading a project. --- dgp/gui/main.py | 10 ++++-- dgp/gui/models.py | 78 ++++++++++++++++++++++++++++++++++++---------- dgp/lib/project.py | 20 +++++++++--- 3 files changed, 83 insertions(+), 25 deletions(-) diff --git a/dgp/gui/main.py b/dgp/gui/main.py index a1ebda4..abfc802 100644 --- a/dgp/gui/main.py +++ b/dgp/gui/main.py @@ -170,7 +170,7 @@ def _init_plots(self) -> None: def _on_added_line(self, info): for flight in self.project.flights: if info.flight_id == flight.uid: - print(flight.lines) + print("Flight lines: ", flight.lines) if info.uid in flight.lines: line = flight.lines[info.uid] line.start = info.start @@ -183,9 +183,10 @@ def _on_added_line(self, info): label=info.label)) else: flight.add_line(info.start, info.stop, uid=info.uid) - self.log.debug("Added line: start={start}, stop={stop}, " + self.log.debug("Added line to flight {flt}: start={start}, stop={stop}, " "label={label}" - .format(start=info.start, + .format(flt=flight.name, + start=info.start, stop=info.stop, label=info.label)) @@ -486,6 +487,7 @@ def add_flight_dialog(self) -> None: self.import_data(dialog.gps, 'gps', flight) plot, widget = self._new_plot_widget(flight, rows=3) + plot.line_changed.connect(self._on_added_line) self.gravity_stack.addWidget(widget) self.flight_plots[flight.uid] = plot, widget # self.project_tree.refresh(curr_flightid=flight.uid) @@ -522,6 +524,7 @@ def __init__(self, project=None, parent=None): self._init_model() def _init_model(self): + """Initialize a new-style ProjectModel from models.py""" model = ProjectModel(self._project) model.rowsAboutToBeInserted.connect(self.begin_insert) model.rowsInserted.connect(self.end_insert) @@ -541,6 +544,7 @@ def end_insert(self, index, start, end): def generate_airborne_model(self, project: prj.AirborneProject): """Generate a Qt Model based on the project structure.""" + raise DeprecationWarning model = QStandardItemModel() root = model.invisibleRootItem() diff --git a/dgp/gui/models.py b/dgp/gui/models.py index 8554b15..e851529 100644 --- a/dgp/gui/models.py +++ b/dgp/gui/models.py @@ -10,7 +10,7 @@ from PyQt5.QtGui import QIcon from PyQt5.QtWidgets import QComboBox -from dgp.lib.types import TreeItem +from dgp.lib.types import TreeItem, FlightLine from dgp.lib.project import Container, AirborneProject, Flight, MeterConfig @@ -153,6 +153,38 @@ def object(self) -> TreeItem: """Return the underlying class wrapped by this ProjectItem i.e. Flight""" return self._object + @property + def uid(self) -> Union[str, None]: + """Return the UID of the internal object if it has one, else None""" + if not self._hasdata: + return None + return self.object.uid + + def search(self, uid) -> Union['ProjectItem', None]: + """ + Search for an object by UID: + If this object is the target then return self.object, + else recursively search children for a match + Parameters + ---------- + uid : str + Object Unique Identifier to search for + + Returns + ------- + Union[ProjectItem, None]: + Returns the Item if found, otherwise None + """ + if self.uid == uid: + return self + + for child in self._children: + result = child.search(uid) + if result is not None: + return result + + return None + def append_child(self, child) -> bool: """ Appends a child object to this ProjectItem. If the passed child is already an instance of ProjectItem, the @@ -169,7 +201,7 @@ def append_child(self, child) -> bool: True on success Raises ------ - TBD Exception on error + TODO: Exception on error """ if not isinstance(child, ProjectItem): self._children.append(ProjectItem(child, self)) @@ -222,6 +254,9 @@ def child_count(self): def column_count(): return 1 + def index(self): + return self._parent.indexof(self) + def data(self, role=None): # Allow the object to handle data display for certain roles if role in [QtCore.Qt.ToolTipRole, QtCore.Qt.DisplayRole, QtCore.Qt.UserRole]: @@ -258,22 +293,19 @@ def parent_item(self): class ProjectModel(QtCore.QAbstractItemModel): def __init__(self, project, parent=None): super().__init__(parent=parent) + # This will recursively populate the Model as ProjectItem will inspect and create children as necessary self._root_item = ProjectItem(project) self._project = project self._project.parent = self - # Example of what the project structure/tree-view should look like - # TODO: Will the structure contain actual objects (flights, meters etc) or str reprs - # The ProjectItem data() method could retrieve a representation, and allow for powerful - # data manipulations perhaps. - # self.setup_model(project) - def update(self, action, obj): + def update(self, action, obj, uid=None): + # TODO: Use this function to delegate add/remove methods based on obj type (i.e. child, or sub-children) if action.lower() == 'add': - self.add_child(obj) + self.add_child(obj, uid) elif action.lower() == 'remove': - self.remove_child(obj) + self.remove_child(obj, uid) - def add_child(self, item: Union[Flight, MeterConfig]): + def add_child(self, item, uid=None): """ Method to add a generic item of type Flight or MeterConfig to the project and model. In future add ability to add sub-children, e.g. FlightLines (although possibly in @@ -282,7 +314,8 @@ def add_child(self, item: Union[Flight, MeterConfig]): ---------- item : Union[Flight, MeterConfig] Project Flights/Meters child object to add. - + uid : str + Parent UID to which child will be added Returns ------- bool: @@ -295,6 +328,20 @@ def add_child(self, item: Union[Flight, MeterConfig]): Raised if item is not an instance of a recognized type, currently Flight or MeterConfig """ + # If uid is provided, search for it and add the item (we won't check here for type correctness) + if uid is not None: + parent = self._root_item.search(uid) + print("Model adding child to: ", parent) + if parent is not None: + if isinstance(parent.object, Container): + parent.object.add_child(item) + # self.beginInsertRows() + parent.append_child(item) + self.layoutChanged.emit() + return True + return False + + # Otherwise, try to infer the correct parent based on the type of the item for child in self._root_item.children: # type: ProjectItem c_obj = child.object # type: Container if isinstance(c_obj, Container) and issubclass(item.__class__, c_obj.ctype): @@ -309,7 +356,7 @@ def add_child(self, item: Union[Flight, MeterConfig]): print("No match on contianer for object: {}".format(item)) return False - def remove_child(self, item): + def remove_child(self, item, uid=None): for wrapper in self._root_item.children: # type: ProjectItem # Get the internal object representation (within the ProjectItem) c_obj = wrapper.object # type: Container @@ -323,10 +370,6 @@ def remove_child(self, item): return True return False - def setup_model(self, base): - for item in base.children: - self._root_item.append_child(ProjectItem(item, self._root_item)) - def data(self, index: QModelIndex, role: int=None): if not index.isValid(): return QVariant() @@ -390,6 +433,7 @@ def columnCount(self, parent: QModelIndex=QModelIndex(), *args, **kwargs): # def __getattr__(self, item): # return getattr(self._project, item, None) + # QStyledItemDelegate class SelectionDelegate(Qt.QStyledItemDelegate): def __init__(self, choices, parent=None): diff --git a/dgp/lib/project.py b/dgp/lib/project.py index 56e0d4c..2d97a5a 100644 --- a/dgp/lib/project.py +++ b/dgp/lib/project.py @@ -309,8 +309,6 @@ def __init__(self, parent: GravityProject, name: str, meter: MeterConfig=None, * self.flight_timeshift = 0 - # TODO: Flight lines will need to become a Container - # Flight lines keyed by UUID self.lines = Container(ctype=FlightLine, parent=self, name='Flight Lines') @property @@ -419,8 +417,11 @@ def get_channel_data(self, channel): def add_line(self, start: datetime, stop: datetime, uid=None): """Add a flight line to the flight by start/stop index and sequence number""" # line = FlightLine(len(self.lines), None, start, end, self) + self.log.debug("Adding line to LineContainer of flight: {}".format(self.name)) + print("Adding line to LineContainer of flight: {}".format(self.name)) line = FlightLine(start, stop, len(self.lines) + 1, None, uid=uid, parent=self) self.lines.add_child(line) + self.parent.update('add', line, self.lines.uid) return line def __iter__(self): @@ -524,6 +525,8 @@ def data(self, role=None): return "Container for {} type objects.".format(self._name) return self._name + # TODO: Implement recursive search function to locate child/object by UID in the tree. + def child(self, uid): return self._children[uid] @@ -544,7 +547,7 @@ def add_child(self, child) -> bool: if not isinstance(child, self._ctype): return False if child.uid in self._children: - print("child already exists in container, skipping insert") + print("child {} already exists in container, skipping insert".format(child)) return True try: child.parent = self._parent @@ -680,10 +683,17 @@ def add_data(self, df: DataFrame, path: pathlib.Path, dtype: str, flight_uid: st except KeyError: return False + def update(self, action: str, item, uid=None) -> bool: + if self.parent is not None: + print("Calling update on parent model with params: {} {} {}".format(action, item, uid)) + self.parent.update(action, item, uid) + return True + return False + def add_flight(self, flight: Flight) -> None: + flight.parent = self self._children['flights'].add_child(flight) - if self.parent is not None: - self.parent.update('add', flight) + self.update('add', flight) def get_flight(self, uid): flight = self._children['flights'].child(uid) From dfadd353ff33d74f89db4d6bf37dace67ba0ac7a Mon Sep 17 00:00:00 2001 From: bradyzp Date: Fri, 27 Oct 2017 15:14:56 -0600 Subject: [PATCH 022/236] FIX: Update test_project unittests to fix failure. --- tests/test_project.py | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/tests/test_project.py b/tests/test_project.py index 296fd7c..5ee26d1 100644 --- a/tests/test_project.py +++ b/tests/test_project.py @@ -51,7 +51,7 @@ def test_project_directory(self): def test_pickle_project(self): # TODO: Add further complexity to testing of project pickling - flight = Flight(None, 'test_flight', self.at1a5) + flight = Flight(self.project, 'test_flight', self.at1a5) flight.add_line(100, 250.5) self.project.add_flight(flight) @@ -66,7 +66,7 @@ def test_pickle_project(self): self.assertEqual(loaded_project.get_flight(flight.uid).meter.name, 'AT1A-5') def test_flight_iteration(self): - test_flight = Flight(None, 'test_flight', self.at1a5) + test_flight = Flight(self.project, 'test_flight', self.at1a5) line0 = test_flight.add_line(100.1, 200.2) line1 = test_flight.add_line(210, 350.3) lines = [line0, line1] From 300c76721c3bff4f86f0b38a72bb9c9f4f70c6fe Mon Sep 17 00:00:00 2001 From: bradyzp Date: Mon, 30 Oct 2017 11:59:32 -0600 Subject: [PATCH 023/236] ENH: Flight Line patches are redrawn on project load Flight Line selection rectangles are now displayed and drawn when a project is loaded/application launched based on saved Flight Lines. TODO: Code Cleanup in Plotter.py, incorporate new draw_patch function into onclick method to reduce code duplication and outsource patch creation to single function. --- dgp/gui/main.py | 7 ++++++- dgp/lib/plotter.py | 51 +++++++++++++++++++++++++++++++++++++++++++--- 2 files changed, 54 insertions(+), 4 deletions(-) diff --git a/dgp/gui/main.py b/dgp/gui/main.py index abfc802..6703284 100644 --- a/dgp/gui/main.py +++ b/dgp/gui/main.py @@ -14,6 +14,7 @@ import dgp.lib.project as prj from dgp.gui.loader import LoadFile +from dgp.lib.types import FlightLine from dgp.lib.plotter import LineGrabPlot, LineUpdate from dgp.gui.utils import ConsoleHandler, LOG_FORMAT, get_project_file from dgp.gui.dialogs import ImportData, AddFlight, CreateProject, InfoDialog, AdvancedImport @@ -155,7 +156,6 @@ def _init_plots(self) -> None: plot, widget = self._new_plot_widget(flight, rows=3) # TO DO: Need to disconnect these at some point? - plot.line_changed.connect(self._on_added_line) self.flight_plots[flight.uid] = plot, widget self.gravity_stack.addWidget(widget) @@ -163,6 +163,8 @@ def _init_plots(self) -> None: self.log.debug("Plotting using plot_flight_main method") self.plot_flight_main(plot, flight) + # Don't connect this until after self.plot_flight_main or it will trigger on initial draw + plot.line_changed.connect(self._on_added_line) self.log.debug("Initialized Flight Plot: {}".format(plot)) self.status.emit('Flight Plot {} Initialized'.format(flight.name)) self.progress.emit(i+1) @@ -339,6 +341,7 @@ def redraw(self, flt_id: str) -> None: ------- None """ + self.log.warning("Redrawing plot") plot, _ = self.flight_plots[flt_id] flt = self.project.get_flight(flt_id) # type: prj.Flight self.plot_flight_main(plot, flt) @@ -372,6 +375,8 @@ def plot_flight_main(self, plot: LineGrabPlot, flight: prj.Flight) -> None: plot.plot2(plot[1], grav_series['long']) if eotvos_series is not None: plot.plot2(plot[2], eotvos_series['eotvos']) + for line in flight.lines: + plot.draw_patch(line.start, line.stop, line.uid) plot.draw() @staticmethod diff --git a/dgp/lib/plotter.py b/dgp/lib/plotter.py index 63bcfec..e25aa67 100644 --- a/dgp/lib/plotter.py +++ b/dgp/lib/plotter.py @@ -19,7 +19,7 @@ NavigationToolbar2QT as NavigationToolbar) from matplotlib.figure import Figure from matplotlib.axes import Axes -from matplotlib.dates import DateFormatter, num2date +from matplotlib.dates import DateFormatter, num2date, date2num from matplotlib.backend_bases import MouseEvent from matplotlib.patches import Rectangle from pandas import Series @@ -97,6 +97,7 @@ def __len__(self): ClickInfo = namedtuple('ClickInfo', ['partners', 'x0', 'width', 'xpos', 'ypos']) LineUpdate = namedtuple('LineUpdate', ['flight_id', 'uid', 'start', 'stop', 'label']) + class LineGrabPlot(BasePlottingCanvas): """ LineGrabPlot implements BasePlottingCanvas and provides an onclick method to select flight @@ -150,6 +151,46 @@ def clear(self): # ax.callbacks.connect('xlim_changed', self._on_xlim_changed) self.draw() + # TODO: Clean this up, allow direct passing of FlightLine Objects + # Also convert this/test this to be used in onclick to create lines + def draw_patch(self, start, stop, uid): + caxes = self._axes[0] + ylim = caxes.get_ylim() # type: Tuple + xstart = date2num(start) + xstop = date2num(stop) + # print("Xstart: {}, Xend: {}".format(xstart, xstop)) + width = xstop - xstart + height = ylim[1] - ylim[0] + # print("Adding patch at {}:{} height: {} width: {}".format(start, stop, height, width)) + c_rect = Rectangle((xstart, ylim[0]), width, height*2, alpha=0.2) + + caxes.add_patch(c_rect) + caxes.draw_artist(caxes.patch) + + # uid = gen_uuid('ln') + left = num2date(c_rect.get_x()) + right = num2date(c_rect.get_x() + c_rect.get_width()) + partners = [{'uid': uid, 'rect': c_rect, 'bg': None, 'left': left, 'right': right, 'label': None}] + + for ax in self._axes: + if ax == caxes: + continue + ylim = ax.get_ylim() + height = ylim[1] - ylim[0] + a_rect = Rectangle((xstart, ylim[0]), width, height * 2, alpha=0.1) + ax.add_patch(a_rect) + ax.draw_artist(ax.patch) + left = num2date(a_rect.get_x()) + right = num2date(a_rect.get_x() + a_rect.get_width()) + partners.append({'uid': uid, 'rect': a_rect, 'bg': None, 'left': left, + 'right': right, 'label': None}) + + self.rects.append(partners) + + self.figure.canvas.draw() + self.draw() + return + def onclick(self, event: MouseEvent): if self.zooming or self.panning: # Don't do anything when zooming/panning is enabled return @@ -164,7 +205,7 @@ def onclick(self, event: MouseEvent): # print("Current axes: {}\nOther axes obj: {}".format(repr(caxes), other_axes)) if event.button == 3: - # Right click + # Right click for partners in self.rects: patch = partners[0]['rect'] if patch.get_x() <= event.xdata <= patch.get_x() + patch.get_width(): @@ -173,7 +214,7 @@ def onclick(self, event: MouseEvent): return else: - # Left click + # Left click for partners in self.rects: patch = partners[0]['rect'] if patch.get_x() <= event.xdata <= patch.get_x() + patch.get_width(): @@ -193,15 +234,19 @@ def onclick(self, event: MouseEvent): return # else: Create a new rectangle on all axes + # TODO: Use the new draw_patch function to do this (some modifications required) ylim = caxes.get_ylim() # type: Tuple xlim = caxes.get_xlim() # type: Tuple width = (xlim[1] - xlim[0]) * np.float64(0.05) + # print("Width 5%: ", width) # Get the bottom left corner of the rectangle which will be centered at the mouse click x0 = event.xdata - width / 2 y0 = ylim[0] height = ylim[1] - ylim[0] c_rect = Rectangle((x0, y0), width, height*2, alpha=0.1) + # Experimental replacement: + # self.draw_patch(num2date(x0), num2date(x0+width), uid=gen_uuid('ln')) caxes.add_patch(c_rect) caxes.draw_artist(caxes.patch) From 73860ffdb5e1aa428e0687164ccbdc43cabe0f05 Mon Sep 17 00:00:00 2001 From: chris Date: Mon, 30 Oct 2017 16:50:14 +1300 Subject: [PATCH 024/236] ENH: Finished implementing right-click context menu line remove functionality. --- dgp/gui/main.py | 34 +++++++++++++++++++++------------- dgp/lib/plotter.py | 41 +++++++++++++++++++++++++++++++++-------- dgp/lib/project.py | 4 ++++ 3 files changed, 58 insertions(+), 21 deletions(-) diff --git a/dgp/gui/main.py b/dgp/gui/main.py index 6703284..9c732a9 100644 --- a/dgp/gui/main.py +++ b/dgp/gui/main.py @@ -164,25 +164,33 @@ def _init_plots(self) -> None: self.plot_flight_main(plot, flight) # Don't connect this until after self.plot_flight_main or it will trigger on initial draw - plot.line_changed.connect(self._on_added_line) + plot.line_changed.connect(self._on_modified_line) self.log.debug("Initialized Flight Plot: {}".format(plot)) self.status.emit('Flight Plot {} Initialized'.format(flight.name)) self.progress.emit(i+1) - def _on_added_line(self, info): + def _on_modified_line(self, info): for flight in self.project.flights: if info.flight_id == flight.uid: - print("Flight lines: ", flight.lines) + if info.uid in flight.lines: - line = flight.lines[info.uid] - line.start = info.start - line.stop = info.stop - line.label = info.label - self.log.debug("Changed line: start={start}, stop={stop}, " - "label={label}" - .format(start=info.start, - stop=info.stop, - label=info.label)) + if info.action == 'modify': + line = flight.lines[info.uid] + line.start = info.start + line.stop = info.stop + line.label = info.label + self.log.debug("Modified line: start={start}, " + "stop={stop}, label={label}" + .format(start=info.start, + stop=info.stop, + label=info.label)) + elif info.action == 'remove': + flight.remove_line(info.uid) + self.log.debug("Removed line: start={start}, " + "stop={stop}, label={label}" + .format(start=info.start, + stop=info.stop, + label=info.label)) else: flight.add_line(info.start, info.stop, uid=info.uid) self.log.debug("Added line to flight {flt}: start={start}, stop={stop}, " @@ -492,7 +500,7 @@ def add_flight_dialog(self) -> None: self.import_data(dialog.gps, 'gps', flight) plot, widget = self._new_plot_widget(flight, rows=3) - plot.line_changed.connect(self._on_added_line) + plot.line_changed.connect(self._on_modified_line) self.gravity_stack.addWidget(widget) self.flight_plots[flight.uid] = plot, widget # self.project_tree.refresh(curr_flightid=flight.uid) diff --git a/dgp/lib/plotter.py b/dgp/lib/plotter.py index e25aa67..6350001 100644 --- a/dgp/lib/plotter.py +++ b/dgp/lib/plotter.py @@ -24,6 +24,7 @@ from matplotlib.patches import Rectangle from pandas import Series import numpy as np +from functools import partial class BasePlottingCanvas(FigureCanvas): @@ -95,7 +96,7 @@ def __len__(self): ClickInfo = namedtuple('ClickInfo', ['partners', 'x0', 'width', 'xpos', 'ypos']) -LineUpdate = namedtuple('LineUpdate', ['flight_id', 'uid', 'start', 'stop', 'label']) +LineUpdate = namedtuple('LineUpdate', ['flight_id', 'action', 'uid', 'start', 'stop', 'label']) class LineGrabPlot(BasePlottingCanvas): @@ -122,16 +123,32 @@ def __init__(self, n=1, fid=None, title=None, parent=None): if title: self.figure.suptitle(title, y=1) - # internal flags self._stretching = None self._is_near_edge = False + self._selected_patch = None # create context menu self._pop_menu = QMenu(self) - self._pop_menu.addAction(QAction('Remove', self, triggered=self._remove_patch)) - - def _remove_patch(self): - pass + self._pop_menu.addAction(QAction('Remove', self, + triggered=self._remove_patch)) + + def _remove_patch(self, partners): + if self._selected_patch is not None: + partners = self._selected_patch + + uid = partners[0]['uid'] + start = partners[0]['left'] + stop = partners[0]['right'] + + # remove patches + while partners: + patch_group = partners.pop() + patch_group['rect'].remove() + self.rects.remove(partners) + self.draw() + self.line_changed.emit(LineUpdate(flight_id=self._flight_id, + action='remove', uid=uid, start=start, stop=stop, label=None)) + self._selected_patch = None def draw(self): self.plotted = True @@ -192,6 +209,8 @@ def draw_patch(self, start, stop, uid): return def onclick(self, event: MouseEvent): + # TO DO: What happens when a patch is added before a new plot is added? + if self.zooming or self.panning: # Don't do anything when zooming/panning is enabled return @@ -210,6 +229,7 @@ def onclick(self, event: MouseEvent): patch = partners[0]['rect'] if patch.get_x() <= event.xdata <= patch.get_x() + patch.get_width(): cursor = QCursor() + self._selected_patch = partners self._pop_menu.popup(cursor.pos()) return @@ -270,7 +290,8 @@ def onclick(self, event: MouseEvent): self.rects.append(partners) if self._flight_id is not None: - self.line_changed.emit(LineUpdate(self._flight_id, uid, left, right, None)) + self.line_changed.emit(LineUpdate(flight_id=self._flight_id, + action='add', uid=uid, start=left, stop=right, label=None)) self.figure.canvas.draw() @@ -354,7 +375,10 @@ def onmotion(self, event: MouseEvent): self._is_near_edge = self._near_edge(event) def onrelease(self, event: MouseEvent): + if self.clicked is None: + if self._selected_patch is not None: + self._selected_patch = None return # Nothing Selected partners = self.clicked.partners @@ -373,7 +397,8 @@ def onrelease(self, event: MouseEvent): label = partners[0]['label'] if self._flight_id is not None: - self.line_changed.emit(LineUpdate(self._flight_id, uid, start, stop, label)) + self.line_changed.emit(LineUpdate(flight_id=self._flight_id, + action='modify', uid=uid, start=start, stop=stop, label=label)) self.clicked = None diff --git a/dgp/lib/project.py b/dgp/lib/project.py index 2d97a5a..ff173dd 100644 --- a/dgp/lib/project.py +++ b/dgp/lib/project.py @@ -424,6 +424,10 @@ def add_line(self, start: datetime, stop: datetime, uid=None): self.parent.update('add', line, self.lines.uid) return line + def remove_line(self, uid): + """ Remove a flight line """ + return self.lines.remove_child(self.lines[uid]) + def __iter__(self): """ Implement class iteration, allowing iteration through FlightLines in this Flight From 9fac150f1fb3fc06b8616b6bdb26d27a0c5ef00f Mon Sep 17 00:00:00 2001 From: Zac Brady Date: Thu, 9 Nov 2017 15:20:19 -0700 Subject: [PATCH 025/236] Feature/#36 select lines (#43) * CLN/ENH: Code Cleanup and resolution of TODO's in various project files. Cleaned up old unused code, refactored some methods e.g. plot2 -> plot_series, some small adjustments to Container class. ENH: Added logic to remove FlightLines when new gravity data is imported. * ENH: Partial implementation of Channel selection Channels (for Gravity data) can be selected by dragging and dropping them beneath the respective plot titles in the Channel list. TODO: Implement ability to remove channels from the plot. TODO: Add context menu allowing user to clear all channels from specified plot. TODO: Replot channels based on the state saved in the Flight objects upon load, instead of the default (if there is saved state). * ENH: Prereq changes to project structure for channel selection. Updates to plotter and flight classes to facilitate addition/removal and update of data channels in future via graphical interface. Flight now stores plot state - that is, which of its available data channels are plotted on which axes, to be restored on project load. * CLN: Cleanup deprecated project/plot code. * ENH: Add data channel selection capability Ability to add/remove data channels to and from different plots in workspace. TODO: Performance optimization/fix for data loading in the Flight class. TODO: Enable adding of calculated data series i.e. Eotvos * ENH/FIX: Optimized data loading, fixed bugs in channel selection. ENH: Optimized project.py::Flight::get_channel_data function to cache DataFrame on first load, to reduce disk IO operations. FIX: Issue when moving a channel from one plot to another, this now works correctly. FIX: Bug in plotter code when all channels are removed from all plots, as the DateFormatter is unable to handle this situation. FIX: Line Selection removal in Project Tree, rewrote most of the ProjectModel::remove_child code to properly handle removal of items from the model. --- dgp/__main__.py | 4 +- dgp/gui/dialogs.py | 19 ++- dgp/gui/main.py | 234 +++++++++++++++++++++++------------- dgp/gui/models.py | 73 ++++++++---- dgp/gui/ui/main_window.ui | 90 ++++++++++---- dgp/gui/utils.py | 3 +- dgp/lib/plotter.py | 245 +++++++++++++++++++++++++++----------- dgp/lib/project.py | 126 ++++++++++++++++---- dgp/lib/types.py | 47 +++++++- 9 files changed, 612 insertions(+), 229 deletions(-) diff --git a/dgp/__main__.py b/dgp/__main__.py index 26c4aef..70bebf1 100644 --- a/dgp/__main__.py +++ b/dgp/__main__.py @@ -7,12 +7,12 @@ # from dgp import resources_rc from dgp import resources_rc -from PyQt5.QtWidgets import QApplication, QSplashScreen +from PyQt5.QtWidgets import QApplication from dgp.gui.splash import SplashScreen """Program Main Entry Point - Loads SplashScreen GUI""" if __name__ == "__main__": - print("CWD: {}".format(os.getcwd())) + # print("CWD: {}".format(os.getcwd())) app = QApplication(sys.argv) form = SplashScreen() sys.exit(app.exec_()) diff --git a/dgp/gui/dialogs.py b/dgp/gui/dialogs.py index 320c1be..3fbffc3 100644 --- a/dgp/gui/dialogs.py +++ b/dgp/gui/dialogs.py @@ -24,7 +24,13 @@ class BaseDialog(QtWidgets.QDialog): - pass + def __init__(self): + self.log = logging.getLogger(__name__) + error_handler = ConsoleHandler(self.write_error) + error_handler.setFormatter(logging.Formatter('%(levelname)s: %(message)s')) + error_handler.setLevel(logging.DEBUG) + self.log.addHandler(error_handler) + pass class ImportData(QtWidgets.QDialog, data_dialog): @@ -88,7 +94,7 @@ def select_tree_file(self, index): path = pathlib.Path(self.file_model.filePath(index)) # TODO: Verify extensions for selected files before setting below if path.is_file(): - self.field_path.setText(os.path.normpath(path)) # TODO: Change this to use pathlib function + self.field_path.setText(str(path.resolve())) self.path = path else: return @@ -131,7 +137,7 @@ def __init__(self, project, flight, parent=None): """ super().__init__(parent=parent) self.setupUi(self) - self._preview_limit = 3 + self._preview_limit = 5 self._project = project self._path = None self._flight = flight @@ -145,7 +151,8 @@ def __init__(self, project, flight, parent=None): self.line_path.textChanged.connect(self._preview) self.btn_browse.clicked.connect(self.browse_file) self.btn_setcols.clicked.connect(self._capture) - self.btn_reload.clicked.connect(functools.partial(self._preview, self._path)) + # This doesn't work, as the partial function is created with self._path which is None + # self.btn_reload.clicked.connect(functools.partial(self._preview, self._path)) @property def content(self) -> (str, str, List, prj.Flight): @@ -170,6 +177,8 @@ def _dtype(self): 'gravity') def _preview(self, path: str): + if path is None: + return path = pathlib.Path(path) if not path.exists(): print("Path doesn't exist") @@ -264,7 +273,7 @@ def __init__(self, *args): super().__init__(*args) self.setupUi(self) - # TODO: Abstract this to a base dialog class so that it can be easily implemented in all dialogs + # TODO: Abstract logging setup to a base dialog class so that it can be easily implemented in all dialogs self.log = logging.getLogger(__name__) error_handler = ConsoleHandler(self.write_error) error_handler.setFormatter(logging.Formatter('%(levelname)s: %(message)s')) diff --git a/dgp/gui/main.py b/dgp/gui/main.py index 9c732a9..4d9045a 100644 --- a/dgp/gui/main.py +++ b/dgp/gui/main.py @@ -4,21 +4,24 @@ import pathlib import functools import logging -from typing import Tuple, List, Dict +from typing import Dict, Union from pandas import Series, DataFrame from PyQt5 import QtCore, QtWidgets, QtGui -from PyQt5.QtCore import pyqtSignal, pyqtBoundSignal +from PyQt5.QtWidgets import QListWidgetItem +from PyQt5.QtCore import pyqtSignal, pyqtBoundSignal, Qt from PyQt5.QtGui import QColor, QStandardItemModel, QStandardItem, QIcon from PyQt5.uic import loadUiType import dgp.lib.project as prj from dgp.gui.loader import LoadFile -from dgp.lib.types import FlightLine from dgp.lib.plotter import LineGrabPlot, LineUpdate -from dgp.gui.utils import ConsoleHandler, LOG_FORMAT, get_project_file +from dgp.lib.types import PlotCurve +from dgp.lib.etc import gen_uuid +from dgp.gui.utils import ConsoleHandler, LOG_FORMAT, LOG_LEVEL_MAP, get_project_file from dgp.gui.dialogs import ImportData, AddFlight, CreateProject, InfoDialog, AdvancedImport -from dgp.gui.models import TableModel, ProjectModel +from dgp.gui.models import TableModel, ProjectModel, ProjectItem + # Load .ui form main_window, _ = loadUiType('dgp/gui/ui/main_window.ui') @@ -45,14 +48,14 @@ class MainWindow(QtWidgets.QMainWindow, main_window): status = pyqtSignal(str) # type: pyqtBoundSignal progress = pyqtSignal(int) # type: pyqtBoundSignal - def __init__(self, project: prj.GravityProject=None, *args): + def __init__(self, project: Union[prj.GravityProject, prj.AirborneProject]=None, *args): super().__init__(*args) self.setupUi(self) # Set up ui within this class - which is base_class defined by .ui file self.title = 'Dynamic Gravity Processor' # Setup logging - self.log = logging.getLogger(__name__) + self.log = logging.getLogger() # Attach to the root logger to capture all events console_handler = ConsoleHandler(self.write_console) console_handler.setFormatter(LOG_FORMAT) self.log.addHandler(console_handler) @@ -114,18 +117,21 @@ def __init__(self, project: prj.GravityProject=None, *args): self.gps_plot_layout.addWidget(self.gps_stack) # Initialize Variables - # TODO: Change this to use pathlib.Path - self.import_base_path = os.path.join(os.getcwd(), '../tests') + self.import_base_path = pathlib.Path('../tests').resolve() self.current_flight = None # type: prj.Flight self.current_flight_index = QtCore.QModelIndex() # type: QtCore.QModelIndex self.tree_index = None # type: QtCore.QModelIndex self.flight_plots = {} # Stores plotter objects for flights + self._flight_channel_models = {} # Store StandardItemModels for Flight channel selection self.project_tree = ProjectTreeView(parent=self, project=self.project) - self.project_tree.setMinimumWidth(290) + self.project_tree.setMinimumWidth(300) self.project_dock_grid.addWidget(self.project_tree, 0, 0, 1, 2) + # Issue #36 Channel Selection Model + self.std_model = None # type: QStandardItemModel + def load(self): self._init_plots() self._init_slots() @@ -140,7 +146,39 @@ def load(self): except TypeError: # This will happen if there are no slots connected pass + def _init_slots(self): + """Initialize PyQt Signals/Slots for UI Buttons and Menus""" + + # File Menu Actions # + self.action_exit.triggered.connect(self.close) + self.action_file_new.triggered.connect(self.new_project_dialog) + self.action_file_open.triggered.connect(self.open_project_dialog) + self.action_file_save.triggered.connect(self.save_project) + + # Project Menu Actions # + self.action_import_data.triggered.connect(self.import_data_dialog) + self.action_add_flight.triggered.connect(self.add_flight_dialog) + + # Project Tree View Actions # + # self.prj_tree.doubleClicked.connect(self.log_tree) + self.project_tree.clicked.connect(self._on_flight_changed) + + # Project Control Buttons # + self.prj_add_flight.clicked.connect(self.add_flight_dialog) + self.prj_import_data.clicked.connect(self.import_data_dialog) + + # Channel Panel Buttons # + # self.selectAllChannels.clicked.connect(self.set_channel_state) + + # self.gravity_channels.itemChanged.connect(self.channel_changed) + # self.resample_value.valueChanged[int].connect(self.resample_rate_changed) + + # Console Window Actions # + self.combo_console_verbosity.currentIndexChanged[str].connect(self.set_logging_level) + def _init_plots(self) -> None: + # TODO: The logic here and in add_flight_dialog needs to be consolidated into single function + # TODO: If a flight has saved data channel selection plot those instead of the default """ Initialize plots for flight objects in project. This allows us to switch between individual plots without re-plotting giving a vast @@ -155,14 +193,12 @@ def _init_plots(self) -> None: continue plot, widget = self._new_plot_widget(flight, rows=3) - # TO DO: Need to disconnect these at some point? self.flight_plots[flight.uid] = plot, widget self.gravity_stack.addWidget(widget) - # gravity = flight.gravity - self.log.debug("Plotting using plot_flight_main method") - self.plot_flight_main(plot, flight) + self.update_plot(plot, flight) + # TODO: Need to disconnect these at some point? # Don't connect this until after self.plot_flight_main or it will trigger on initial draw plot.line_changed.connect(self._on_modified_line) self.log.debug("Initialized Flight Plot: {}".format(plot)) @@ -201,8 +237,9 @@ def _on_modified_line(self, info): label=info.label)) @staticmethod - def _new_plot_widget(flight, rows=2): - plot = LineGrabPlot(rows, fid=flight.uid, title=flight.name) + def _new_plot_widget(flight, rows=3): + """Generate a new LineGrabPlot and Containing Widget for display in Qt""" + plot = LineGrabPlot(flight, n=rows, fid=flight.uid, title=flight.name) plot_toolbar = plot.get_toolbar() layout = QtWidgets.QVBoxLayout() @@ -214,39 +251,74 @@ def _new_plot_widget(flight, rows=2): return plot, widget - def _init_slots(self): - """Initialize PyQt Signals/Slots for UI Buttons and Menus""" - - # File Menu Actions # - self.action_exit.triggered.connect(self.exit) - self.action_file_new.triggered.connect(self.new_project_dialog) - self.action_file_open.triggered.connect(self.open_project_dialog) - self.action_file_save.triggered.connect(self.save_project) - - # Project Menu Actions # - self.action_import_data.triggered.connect(self.import_data_dialog) - self.action_add_flight.triggered.connect(self.add_flight_dialog) - - # Project Tree View Actions # - # self.prj_tree.doubleClicked.connect(self.log_tree) - self.project_tree.clicked.connect(self.flight_changed) - - # Project Control Buttons # - self.prj_add_flight.clicked.connect(self.add_flight_dialog) - self.prj_import_data.clicked.connect(self.import_data_dialog) - - # Channel Panel Buttons # - # self.selectAllChannels.clicked.connect(self.set_channel_state) + def populate_channel_tree(self, flight: prj.Flight=None): + if flight is None: + flight = self.current_flight - # self.gravity_channels.itemChanged.connect(self.channel_changed) - # self.resample_value.valueChanged[int].connect(self.resample_rate_changed) - - # Console Window Actions # - self.combo_console_verbosity.currentIndexChanged[str].connect(self.set_logging_level) + if flight.uid in self._flight_channel_models: + self.tree_channels.setModel(self._flight_channel_models[flight.uid]) + self.tree_channels.expandAll() + return + else: + # Generate new StdModel + model = QStandardItemModel() + model.itemChanged.connect(self._update_channel_tree) + + header_flags = Qt.ItemIsSelectable | Qt.ItemIsEnabled | Qt.ItemIsDropEnabled + headers = {} # ax_index: header + for ax in range(len(self.flight_plots[flight.uid][0])): + plot_header = QStandardItem("Plot {idx}".format(idx=ax)) + plot_header.setData(ax, Qt.UserRole) + plot_header.setFlags(header_flags) + plot_header.setBackground(QColor("LightBlue")) + headers[ax] = plot_header + model.appendRow(plot_header) + + channels_header = QStandardItem("Available Channels::") + channels_header.setBackground(QColor("Orange")) + channels_header.setFlags(Qt.NoItemFlags) + model.appendRow(channels_header) + + items = {} # uid: item + item_flags = Qt.ItemIsEnabled | Qt.ItemIsSelectable | Qt.ItemIsDragEnabled + for uid, label in flight.channels.items(): + item = QStandardItem(label) + item.setData(uid, role=Qt.UserRole) + item.setFlags(item_flags) + items[uid] = item + + state = flight.get_plot_state() # returns: {uid: (label, axes), ...} + for uid in state: + label, axes = state[uid] + headers[axes].appendRow(items[uid]) + + for uid in items: + if uid not in state: + model.appendRow(items[uid]) + + self._flight_channel_models[flight.uid] = model + self.tree_channels.setModel(model) + self.tree_channels.expandAll() + + def _update_channel_tree(self, item): + self.log.debug("Updating model: {}".format(item.text())) + parent = item.parent() + plot, _ = self.flight_plots[self.current_flight.uid] # type: LineGrabPlot + uid = item.data(Qt.UserRole) + if parent is not None: + # TODO: Logic here to remove from previous sub-plots (i.e. dragged from plot 0 to plot 1) + plot.remove_series(uid) + label = item.text() + plot_ax = parent.data(Qt.UserRole) + self.log.debug("Item new parent: {}".format(item.parent().text())) + self.log.debug("Adding plot on axes: {}".format(plot_ax)) + data = self.current_flight.get_channel_data(uid) + curve = PlotCurve(uid, data, label, plot_ax) + plot.add_series(curve, propogate=True) - def exit(self): - """PyQt Slot: Exit the PyQt application by closing the main window (self)""" - self.close() + else: + self.log.debug("Item has no parent (remove from plot)") + plot.remove_series(uid) # Experimental Context Menu def create_actions(self): @@ -260,9 +332,7 @@ def flight_info(self): def set_logging_level(self, name: str): """PyQt Slot: Changes logging level to passed string logging level name.""" self.log.debug("Changing logging level to: {}".format(name)) - # TODO: Replace this with gui.utils LOG_COLOR_MAP - level = {'debug': logging.DEBUG, 'info': logging.INFO, 'warning': logging.WARNING, 'error': logging.ERROR, - 'critical': logging.CRITICAL}[name.lower()] + level = LOG_LEVEL_MAP[name.lower()] self.log.setLevel(level) def write_console(self, text, level): @@ -279,7 +349,7 @@ def write_console(self, text, level): # Plot functions ##### - def flight_changed(self, index: QtCore.QModelIndex) -> None: + def _on_flight_changed(self, index: QtCore.QModelIndex) -> None: """ PyQt Slot called upon change in flight selection using the Project Tree View. When a new flight is selected we want to plot the gravity channel in subplot 0, with cross and long in subplot 1 @@ -301,7 +371,6 @@ def flight_changed(self, index: QtCore.QModelIndex) -> None: """ self.tree_index = index - # qitem = self.project_tree.model().itemFromIndex(index) # type: QtGui.QStandardItem qitem = index.internalPointer() if qitem is None: return @@ -323,6 +392,8 @@ def flight_changed(self, index: QtCore.QModelIndex) -> None: self.text_info.clear() self.text_info.appendPlainText(str(flight)) + self.populate_channel_tree(flight) + # Check if there is a plot for this flight already if self.flight_plots.get(flight.uid, None) is not None: grav_plot, stack_widget = self.flight_plots[flight.uid] # type: LineGrabPlot @@ -332,10 +403,13 @@ def flight_changed(self, index: QtCore.QModelIndex) -> None: self.log.error("No plot for this flight found.") return + # self.populate_channels(flight) + if not grav_plot.plotted: - self.plot_flight_main(grav_plot, flight) + self.update_plot(grav_plot, flight) return + # TODO: is this necessary def redraw(self, flt_id: str) -> None: """ Redraw the main flight plot (gravity, cross/long, eotvos) for the specific flight. @@ -352,9 +426,11 @@ def redraw(self, flt_id: str) -> None: self.log.warning("Redrawing plot") plot, _ = self.flight_plots[flt_id] flt = self.project.get_flight(flt_id) # type: prj.Flight - self.plot_flight_main(plot, flt) + self.update_plot(plot, flt) + # self.populate_channel_tree(flt) - def plot_flight_main(self, plot: LineGrabPlot, flight: prj.Flight) -> None: + @staticmethod + def update_plot(plot: LineGrabPlot, flight: prj.Flight) -> None: """ Plot a flight on the main plot area as a time series, displaying gravity, long/cross and eotvos By default, expects a plot with 3 subplots accesible via getattr notation. @@ -375,34 +451,23 @@ def plot_flight_main(self, plot: LineGrabPlot, flight: prj.Flight) -> None: None """ plot.clear() - grav_series = flight.gravity - eotvos_series = flight.eotvos - if grav_series is not None: - plot.plot2(plot[0], grav_series['gravity']) - plot.plot2(plot[1], grav_series['cross']) - plot.plot2(plot[1], grav_series['long']) - if eotvos_series is not None: - plot.plot2(plot[2], eotvos_series['eotvos']) + queue_draw = False + + state = flight.get_plot_state() + for channel in state: + label, axes = state[channel] + curve = PlotCurve(channel, flight.get_channel_data(channel), label, axes) + plot.add_series(curve, propogate=False) + for line in flight.lines: plot.draw_patch(line.start, line.stop, line.uid) - plot.draw() + queue_draw = True + if queue_draw: + plot.draw() - @staticmethod - def plot_time_series(plot: LineGrabPlot, data: DataFrame, fields: Dict): - plot.clear() - for index in fields: - if isinstance(fields[index], str): - series = data.get(fields[index]) # type: Series - plot.plot2(plot[index], series) - continue - for field in fields[index]: - series = data.get(field) # type: Series - plot.plot2(plot[index], series) - plot.draw() - plot.plotted = True - - def progress_dialog(self, title, min=0, max=1): - dialog = QtWidgets.QProgressDialog(title, "Cancel", min, max, self) + def progress_dialog(self, title, start=0, stop=1): + """Generate a progress bar dialog to show progress on long running operation.""" + dialog = QtWidgets.QProgressDialog(title, "Cancel", start, stop, self) dialog.setWindowTitle("Loading...") dialog.setModal(True) dialog.setMinimumDuration(0) @@ -442,6 +507,8 @@ def import_data_dialog(self) -> None: if dialog.exec_(): path, dtype, fields, flight = dialog.content # print("path: {} type: {}\nfields: {}\nflight: {}".format(path, dtype, fields, flight)) + # Delete flight model to force update + del self._flight_channel_models[flight.uid] self.import_data(path, dtype, flight, fields=fields) return @@ -477,7 +544,7 @@ def open_project_dialog(self) -> None: if not path: return - prj_file = get_project_file(path) # TODO: Migrate this func to a utility module + prj_file = get_project_file(path) if prj_file is None: self.log.warning("No project file's found in directory: {}".format(path)) return @@ -503,7 +570,6 @@ def add_flight_dialog(self) -> None: plot.line_changed.connect(self._on_modified_line) self.gravity_stack.addWidget(widget) self.flight_plots[flight.uid] = plot, widget - # self.project_tree.refresh(curr_flightid=flight.uid) return def save_project(self) -> None: @@ -631,7 +697,8 @@ def generate_airborne_model(self, project: prj.AirborneProject): def contextMenuEvent(self, event: QtGui.QContextMenuEvent, *args, **kwargs): context_ind = self.indexAt(event.pos()) # get the index of the item under the click event - context_focus = self.model().itemFromIndex(context_ind) + context_focus = self.model().itemFromIndex(context_ind) # type: ProjectItem + print(context_focus.uid) info_slot = functools.partial(self.flight_info, context_focus) plot_slot = functools.partial(self.flight_plot, context_focus) @@ -647,6 +714,7 @@ def contextMenuEvent(self, event: QtGui.QContextMenuEvent, *args, **kwargs): event.accept() def flight_plot(self, item): + raise NotImplementedError print("Opening new plot for item") pass diff --git a/dgp/gui/models.py b/dgp/gui/models.py index e851529..5431355 100644 --- a/dgp/gui/models.py +++ b/dgp/gui/models.py @@ -5,11 +5,12 @@ from typing import List, Union from PyQt5 import Qt, QtCore -from PyQt5.Qt import QWidget, QModelIndex, QAbstractItemModel +from PyQt5.Qt import QWidget, QModelIndex, QAbstractItemModel, QStandardItemModel from PyQt5.QtCore import QModelIndex, QVariant -from PyQt5.QtGui import QIcon +from PyQt5.QtGui import QIcon, QStandardItem from PyQt5.QtWidgets import QComboBox +from dgp.lib.etc import gen_uuid from dgp.lib.types import TreeItem, FlightLine from dgp.lib.project import Container, AirborneProject, Flight, MeterConfig @@ -135,6 +136,11 @@ def __init__(self, item: Union['ProjectItem', TreeItem, str], parent: Union['Pro # _hasdata records whether the item is a class of ProjectItem or TreeItem, and thus has a data() method. self._hasdata = True + if hasattr(item, 'uid'): + self._uid = item.uid + else: + self._uid = gen_uuid('prj') + if not issubclass(item.__class__, TreeItem) or isinstance(item, ProjectItem): self._hasdata = False if not hasattr(item, 'children'): @@ -157,7 +163,7 @@ def object(self) -> TreeItem: def uid(self) -> Union[str, None]: """Return the UID of the internal object if it has one, else None""" if not self._hasdata: - return None + return self._uid return self.object.uid def search(self, uid) -> Union['ProjectItem', None]: @@ -227,7 +233,7 @@ def remove_child(self, child): """ for subitem in self._children[:]: # type: ProjectItem - if subitem.object.uid == child.uid: + if subitem.uid == child.uid: print("removing subitem: {}".format(subitem)) self._children.remove(subitem) return True @@ -282,7 +288,7 @@ def row(self): return self._parent.indexof(self) return 0 - def parent_item(self): + def parent(self): return self._parent @@ -290,6 +296,7 @@ def parent_item(self): # adding a flight, which would then update the model, without rebuilding the entire structure as # is currently done. # TODO: Can we inherit from AirborneProject, to create a single interface for modifying, and displaying the project? +# or vice versa class ProjectModel(QtCore.QAbstractItemModel): def __init__(self, project, parent=None): super().__init__(parent=parent) @@ -299,11 +306,10 @@ def __init__(self, project, parent=None): self._project.parent = self def update(self, action, obj, uid=None): - # TODO: Use this function to delegate add/remove methods based on obj type (i.e. child, or sub-children) if action.lower() == 'add': self.add_child(obj, uid) elif action.lower() == 'remove': - self.remove_child(obj, uid) + self.remove_child(uid) def add_child(self, item, uid=None): """ @@ -326,7 +332,6 @@ def add_child(self, item, uid=None): ------ NotImplementedError: Raised if item is not an instance of a recognized type, currently Flight or MeterConfig - """ # If uid is provided, search for it and add the item (we won't check here for type correctness) if uid is not None: @@ -356,21 +361,20 @@ def add_child(self, item, uid=None): print("No match on contianer for object: {}".format(item)) return False - def remove_child(self, item, uid=None): - for wrapper in self._root_item.children: # type: ProjectItem - # Get the internal object representation (within the ProjectItem) - c_obj = wrapper.object # type: Container - if isinstance(c_obj, Container) and c_obj.ctype == item.__class__: - cindex = self.createIndex(self._root_item.indexof(wrapper), 1, wrapper) - self.beginRemoveRows(cindex, wrapper.indexof(item), wrapper.indexof(item)) - c_obj.remove_child(item) - # ProjectItem remove_child accepts a proper object (i.e. not a ProjectItem), and compares the UID - wrapper.remove_child(item) - self.endRemoveRows() - return True - return False + def remove_child(self, uid): + item = self._root_item.search(uid) + item_index = self.createIndex(item.index(), 1, item) + parent = item.parent() + cindex = self.createIndex(0, 0, parent) + + # Execute removal + self.beginRemoveRows(cindex, item_index.row(), item_index.row()) + parent.remove_child(item) + self.endRemoveRows() + return - def data(self, index: QModelIndex, role: int=None): + @staticmethod + def data(index: QModelIndex, role: int=None): if not index.isValid(): return QVariant() @@ -380,7 +384,8 @@ def data(self, index: QModelIndex, role: int=None): else: return item.data(role) - def itemFromIndex(self, index: QModelIndex): + @staticmethod + def itemFromIndex(index: QModelIndex): return index.internalPointer() def flags(self, index: QModelIndex): @@ -412,7 +417,7 @@ def parent(self, index: QModelIndex): return QModelIndex() child_item = index.internalPointer() # type: ProjectItem - parent_item = child_item.parent_item() # type: ProjectItem + parent_item = child_item.parent() # type: ProjectItem if parent_item == self._root_item: return QModelIndex() return self.createIndex(parent_item.row(), 0, parent_item) @@ -424,7 +429,8 @@ def rowCount(self, parent: QModelIndex=QModelIndex(), *args, **kwargs): else: return self._root_item.child_count() - def columnCount(self, parent: QModelIndex=QModelIndex(), *args, **kwargs): + @staticmethod + def columnCount(parent: QModelIndex=QModelIndex(), *args, **kwargs): return 1 # Highly Experimental: @@ -474,4 +480,21 @@ def updateEditorGeometry(self, editor: QWidget, option: Qt.QStyleOptionViewItem, editor.setGeometry(option.rect) +# Experimental: Issue #36 +class DataChannel(QStandardItem): + def __init__(self): + super().__init__(self) + self.setDragEnabled(True) + + def onclick(self): + pass + + +class ChannelListModel(QStandardItemModel): + def __init__(self): + pass + def dropMimeData(self, QMimeData, Qt_DropAction, p_int, p_int_1, QModelIndex): + print("Mime data dropped") + pass + pass diff --git a/dgp/gui/ui/main_window.ui b/dgp/gui/ui/main_window.ui index 7f83268..df29c16 100644 --- a/dgp/gui/ui/main_window.ui +++ b/dgp/gui/ui/main_window.ui @@ -48,10 +48,16 @@ 500 + + true + 0 + + true + Gravity @@ -62,6 +68,9 @@ + + true + GPS @@ -138,20 +147,20 @@ true - + 0 0 - 300 + 350 632 - 300 + 350 524287 @@ -166,7 +175,7 @@ - + 0 0 @@ -177,18 +186,14 @@ 5 - - + + - Import Data - - - - :/images/assets/geoid_icon.png:/images/assets/geoid_icon.png + Project Tree: - + Add Flight @@ -199,22 +204,55 @@ - - + + - Project Tree: + Add Meter + + + + :/images/assets/meter_config.png:/images/assets/meter_config.png - - + + - Add Meter + Import Data - :/images/assets/meter_config.png:/images/assets/meter_config.png + :/images/assets/geoid_icon.png:/images/assets/geoid_icon.png + + + + + + + Reset Channels + + + + + + + false + + false + + + QAbstractItemView::InternalMove + + + Qt::MoveAction + + + true + + + false + @@ -246,11 +284,23 @@ - + 0 0 + + + 524 + 300 + + + + + 524287 + 300 + + 0 diff --git a/dgp/gui/utils.py b/dgp/gui/utils.py index e00e17f..31638c6 100644 --- a/dgp/gui/utils.py +++ b/dgp/gui/utils.py @@ -7,7 +7,8 @@ LOG_FORMAT = logging.Formatter(fmt="%(asctime)s:%(levelname)s - %(module)s:%(funcName)s :: %(message)s", datefmt="%H:%M:%S") LOG_COLOR_MAP = {'debug': 'blue', 'info': 'yellow', 'warning': 'brown', 'error': 'red', 'critical': 'orange'} - +LOG_LEVEL_MAP = {'debug': logging.DEBUG, 'info': logging.INFO, 'warning': logging.WARNING, 'error': logging.ERROR, + 'critical': logging.CRITICAL} class ConsoleHandler(logging.Handler): """Custom Logging Handler allowing the specification of a custom destination e.g. a QTextEdit area.""" diff --git a/dgp/lib/plotter.py b/dgp/lib/plotter.py index 6350001..6a2f211 100644 --- a/dgp/lib/plotter.py +++ b/dgp/lib/plotter.py @@ -10,21 +10,25 @@ import datetime from collections import namedtuple from typing import List, Tuple +from functools import reduce -from PyQt5 import QtWidgets -from PyQt5.QtWidgets import QSizePolicy, QMenu, QAction -from PyQt5.QtCore import pyqtSignal -from PyQt5.QtGui import QCursor +# from PyQt5 import QtWidgets +from PyQt5.QtWidgets import QSizePolicy, QMenu, QAction, QWidget, QToolBar +from PyQt5.QtCore import pyqtSignal, QMimeData +from PyQt5.QtGui import QCursor, QDropEvent, QDragEnterEvent, QDragMoveEvent from matplotlib.backends.backend_qt5agg import (FigureCanvasQTAgg as FigureCanvas, NavigationToolbar2QT as NavigationToolbar) from matplotlib.figure import Figure from matplotlib.axes import Axes from matplotlib.dates import DateFormatter, num2date, date2num -from matplotlib.backend_bases import MouseEvent +from matplotlib.ticker import NullFormatter, NullLocator, AutoLocator +from matplotlib.backend_bases import MouseEvent, PickEvent from matplotlib.patches import Rectangle from pandas import Series import numpy as np -from functools import partial + +from dgp.lib.types import PlotCurve +from dgp.lib.project import Flight class BasePlottingCanvas(FigureCanvas): @@ -34,41 +38,41 @@ class BasePlottingCanvas(FigureCanvas): """ def __init__(self, parent=None, width=8, height=4, dpi=100): self.log = logging.getLogger(__name__) + self.log.info("Initializing BasePlottingCanvas") self.parent = parent fig = Figure(figsize=(width, height), dpi=dpi, tight_layout=True) - FigureCanvas.__init__(self, fig) + super().__init__(fig) + # FigureCanvas.__init__(self, fig) self.setParent(parent) FigureCanvas.setSizePolicy(self, QSizePolicy.Expanding, QSizePolicy.Expanding) FigureCanvas.updateGeometry(self) - self._axes = [] + self.axes = [] self.figure.canvas.mpl_connect('button_press_event', self.onclick) self.figure.canvas.mpl_connect('button_release_event', self.onrelease) self.figure.canvas.mpl_connect('motion_notify_event', self.onmotion) + self.figure.canvas.mpl_connect('pick_event', self.onpick) def generate_subplots(self, rows: int) -> None: """Generate vertically stacked subplots for comparing data""" # TODO: Experimenting with generating multiple plots, work with Chris on this class - # def set_x_formatter(axes): - # print("Xlimit changed") - # axes.get_xaxis().set_major_formatter(DateFormatter('%H:%M:%S')) # Clear any current axes first - self._axes = [] + self.axes = [] for i in range(rows): if i == 0: sp = self.figure.add_subplot(rows, 1, i+1) # type: Axes else: # Share x-axis with plot 0 - sp = self.figure.add_subplot(rows, 1, i + 1, sharex=self._axes[0]) # type: Axes + sp = self.figure.add_subplot(rows, 1, i + 1, sharex=self.axes[0]) # type: Axes sp.grid(True) # sp.xaxis_date() # sp.get_xaxis().set_major_formatter(DateFormatter('%H:%M:%S')) sp.name = 'Axes {}'.format(i) # sp.callbacks.connect('xlim_changed', set_x_formatter) - self._axes.append(sp) + self.axes.append(sp) i += 1 self.compute_initial_figure() @@ -85,6 +89,9 @@ def clear(self): def onclick(self, event: MouseEvent): pass + def onpick(self, event: PickEvent): + pass + def onrelease(self, event: MouseEvent): pass @@ -92,14 +99,14 @@ def onmotion(self, event: MouseEvent): pass def __len__(self): - return len(self._axes) + return len(self.axes) ClickInfo = namedtuple('ClickInfo', ['partners', 'x0', 'width', 'xpos', 'ypos']) LineUpdate = namedtuple('LineUpdate', ['flight_id', 'action', 'uid', 'start', 'stop', 'label']) -class LineGrabPlot(BasePlottingCanvas): +class LineGrabPlot(BasePlottingCanvas, QWidget): """ LineGrabPlot implements BasePlottingCanvas and provides an onclick method to select flight line segments. @@ -107,8 +114,10 @@ class LineGrabPlot(BasePlottingCanvas): line_changed = pyqtSignal(LineUpdate) - def __init__(self, n=1, fid=None, title=None, parent=None): - BasePlottingCanvas.__init__(self, parent=parent) + def __init__(self, flight, n=1, fid=None, title=None, parent=None): + super().__init__(parent=parent) + self.setAcceptDrops(True) + self.log = logging.getLogger(__name__) self.rects = [] self.zooming = False self.panning = False @@ -118,8 +127,12 @@ def __init__(self, n=1, fid=None, title=None, parent=None): self.timespan = datetime.timedelta(0) self.resample = slice(None, None, 20) self._lines = {} + self._flight = flight # type: Flight self._flight_id = fid + # Issue #36 + self._plot_lines = {} # {uid: PlotCurve, ...} + if title: self.figure.suptitle(title, y=1) @@ -132,6 +145,15 @@ def __init__(self, n=1, fid=None, title=None, parent=None): self._pop_menu.addAction(QAction('Remove', self, triggered=self._remove_patch)) + def update_plot(self): + raise NotImplementedError + flight_state = self._flight.get_plot_state() + + for channel in flight_state: + label, axes = flight_state[channel] + if channel not in self._plot_lines: + pass + def _remove_patch(self, partners): if self._selected_patch is not None: partners = self._selected_patch @@ -152,49 +174,109 @@ def _remove_patch(self, partners): def draw(self): self.plotted = True + # self.figure.canvas.draw() super().draw() def clear(self): self._lines = {} + self.rects = [] self.resample = slice(None, None, 20) self.draw() - for ax in self._axes: # type: Axes + for ax in self.axes: # type: Axes for line in ax.lines[:]: ax.lines.remove(line) - # ax.cla() - # ax.grid(True) - # Reconnect the xlim_changed callback after clearing - # ax.get_xaxis().set_major_formatter(DateFormatter('%H:%M:%S')) - # ax.callbacks.connect('xlim_changed', self._on_xlim_changed) + for patch in ax.patches[:]: + patch.remove() + ax.relim() self.draw() + # Issue #36 Enable data/channel selection and plotting + def add_series(self, *lines: PlotCurve, draw=True, propogate=True): + """Add one or more data series to the specified axes as a line plot.""" + if not len(self._plot_lines): + # If there are 0 plot lines we need to reset the major locator/formatter + self.log.debug("Re-adding locator and major formatter to empty plot.") + self.axes[0].xaxis.set_major_locator(AutoLocator()) + self.axes[0].xaxis.set_major_formatter(DateFormatter('%H:%M:%S')) + + drawn_axes = {} # Record axes that need to be redrawn + for line in lines: + axes = self.axes[line.axes] + drawn_axes[line.axes] = axes + line.line2d = axes.plot(line.data.index, line.data.values, label=line.label)[0] + self._plot_lines[line.uid] = line + if propogate: + self._flight.update_series(line, action="add") + + for axes in drawn_axes.values(): + self.log.info("Adding legend, relim and autoscaling on axes: {}".format(axes)) + axes.legend() + axes.relim() + axes.autoscale_view() + + # self.log.info(self._plot_lines) + if draw: + self.figure.canvas.draw() + + def update_series(self, line: PlotCurve): + pass + + def remove_series(self, uid): + if uid not in self._plot_lines: + self.log.warning("Series UID could not be located in plot_lines") + return + curve = self._plot_lines[uid] # type: PlotCurve + axes = self.axes[curve.axes] # type: Axes + self._flight.update_series(curve, action="remove") + axes.lines.remove(curve.line2d) + # axes.set + axes.relim() + axes.autoscale_view() + if not axes.lines: + axes.legend_.remove() # Does this work? It does. + else: + axes.legend() + del self._plot_lines[uid] + if len(self._plot_lines) == 0: + self.log.warning("No lines on plotter axes.") + + line_count = reduce(lambda acc, res: acc + res, (len(x.lines) for x in self.axes)) + if not line_count: + self.log.warning("No Lines on any axes.") + # This works, but then need to replace the locator when adding data back + print(self.axes[0].xaxis.get_major_locator()) + self.axes[0].xaxis.set_major_locator(NullLocator()) + self.axes[0].xaxis.set_major_formatter(NullFormatter()) + + self.figure.canvas.draw() + + def get_series_by_label(self, label: str): + pass + # TODO: Clean this up, allow direct passing of FlightLine Objects # Also convert this/test this to be used in onclick to create lines def draw_patch(self, start, stop, uid): - caxes = self._axes[0] + caxes = self.axes[0] ylim = caxes.get_ylim() # type: Tuple xstart = date2num(start) xstop = date2num(stop) - # print("Xstart: {}, Xend: {}".format(xstart, xstop)) width = xstop - xstart height = ylim[1] - ylim[0] - # print("Adding patch at {}:{} height: {} width: {}".format(start, stop, height, width)) c_rect = Rectangle((xstart, ylim[0]), width, height*2, alpha=0.2) caxes.add_patch(c_rect) caxes.draw_artist(caxes.patch) - # uid = gen_uuid('ln') left = num2date(c_rect.get_x()) right = num2date(c_rect.get_x() + c_rect.get_width()) partners = [{'uid': uid, 'rect': c_rect, 'bg': None, 'left': left, 'right': right, 'label': None}] - for ax in self._axes: + for ax in self.axes: if ax == caxes: continue ylim = ax.get_ylim() height = ylim[1] - ylim[0] - a_rect = Rectangle((xstart, ylim[0]), width, height * 2, alpha=0.1) + a_rect = Rectangle((xstart, ylim[0]), width, height * 2, alpha=0.1, picker=True) ax.add_patch(a_rect) ax.draw_artist(ax.patch) left = num2date(a_rect.get_x()) @@ -208,26 +290,40 @@ def draw_patch(self, start, stop, uid): self.draw() return + # Testing: Maybe way to optimize rectangle selection/dragging code + def onpick(self, event: PickEvent): + # Pick needs to be enabled for artist ( picker=True ) + # event.artist references the artist that triggered the pick + self.log.debug("Picked artist: {artist}".format(artist=event.artist)) + def onclick(self, event: MouseEvent): - # TO DO: What happens when a patch is added before a new plot is added? + # TODO: What happens when a patch is added before a new plot is added? + if not self.plotted: + return + lines = 0 + for ax in self.axes: + lines += len(ax.lines) + if lines <= 0: + return if self.zooming or self.panning: # Don't do anything when zooming/panning is enabled return # Check that the click event happened within one of the subplot axes - if event.inaxes not in self._axes: + if event.inaxes not in self.axes: return self.log.info("Xdata: {}".format(event.xdata)) caxes = event.inaxes # type: Axes - other_axes = [ax for ax in self._axes if ax != caxes] + other_axes = [ax for ax in self.axes if ax != caxes] # print("Current axes: {}\nOther axes obj: {}".format(repr(caxes), other_axes)) if event.button == 3: # Right click for partners in self.rects: patch = partners[0]['rect'] - if patch.get_x() <= event.xdata <= patch.get_x() + patch.get_width(): + hit, _ = patch.contains(event) + if hit: cursor = QCursor() self._selected_patch = partners self._pop_menu.popup(cursor.pos()) @@ -263,7 +359,7 @@ def onclick(self, event: MouseEvent): x0 = event.xdata - width / 2 y0 = ylim[0] height = ylim[1] - ylim[0] - c_rect = Rectangle((x0, y0), width, height*2, alpha=0.1) + c_rect = Rectangle((x0, y0), width, height*2, alpha=0.1, picker=True) # Experimental replacement: # self.draw_patch(num2date(x0), num2date(x0+width), uid=gen_uuid('ln')) @@ -366,7 +462,7 @@ def _near_edge(self, event, prox=0.0005): return None def onmotion(self, event: MouseEvent): - if event.inaxes not in self._axes: + if event.inaxes not in self.axes: return if self.clicked is not None: @@ -407,29 +503,29 @@ def onrelease(self, event: MouseEvent): self.figure.canvas.draw() - def plot2(self, ax: Axes, series: Series): - if self._lines.get(id(ax), None) is None: - self._lines[id(ax)] = [] - if len(series) > 10000: - sample_series = series[self.resample] - else: - # Don't resample small series - sample_series = series - line = ax.plot(sample_series.index, sample_series.values, label=sample_series.name) - ax.xaxis.set_major_formatter(DateFormatter('%H:%M:%S')) - - ax.relim() - ax.autoscale_view() - self._lines[id(ax)].append((line, series)) - self.timespan = self._timespan(*ax.get_xlim()) - # print("Timespan: {}".format(self.timespan)) - ax.legend() + def dragEnterEvent(self, event: QDragEnterEvent): + print("Drag entered widget") + event.acceptProposedAction() + + def dragMoveEvent(self, event: QDragMoveEvent): + print("Drag moved") + event.acceptProposedAction() + + def dropEvent(self, event: QDropEvent): + print("Drop detected") + event.acceptProposedAction() + print(event.source()) + print(event.pos()) + mime = event.mimeData() # type: QMimeData + print(mime) + print(mime.text()) @staticmethod - def _timespan(x0, x1): + def get_time_delta(x0, x1): + """Return a time delta from a plot axis limit""" return num2date(x1) - num2date(x0) - def _on_xlim_changed(self, changed: Axes): + def _on_xlim_changed(self, changed: Axes) -> None: """ When the xlim changes (width of the graph), we want to apply a decimation algorithm to the dataset to speed up the visual performance of the graph. So when the graph is zoomed out @@ -441,11 +537,10 @@ def _on_xlim_changed(self, changed: Axes): Returns ------- - + None """ - # print("Xlim changed for ax: {}".format(ax)) - # TODO: Probably move this logic into its own function(s) - delta = self._timespan(*changed.get_xlim()) + self.log.info("XLIM Changed!") + delta = self.get_time_delta(*changed.get_xlim()) if self.timespan: ratio = delta/self.timespan * 100 else: @@ -462,24 +557,33 @@ def _on_xlim_changed(self, changed: Axes): self.resample = resample - for ax in self._axes: + # Update line data using new resample rate + for ax in self.axes: if self._lines.get(id(ax), None) is not None: # print(self._lines[id(ax)]) for line, series in self._lines[id(ax)]: - print("xshape: {}".format(series.shape)) r_series = series[self.resample] - print("Resample shape: {}".format(r_series.shape)) line[0].set_ydata(r_series.values) line[0].set_xdata(r_series.index) ax.draw_artist(line[0]) - print("Resampling to: {}".format(self.resample)) + self.log.debug("Resampling to: {}".format(self.resample)) ax.relim() ax.get_xaxis().set_major_formatter(DateFormatter('%H:%M:%S')) self.figure.canvas.draw() - def get_toolbar(self, parent=None) -> QtWidgets.QToolBar: + def get_toolbar(self, parent=None) -> QToolBar: """ - Get a Matplotlib Toolbar for the current plot instance, and set toolbar actions (pan/zoom) specific to this plot. + Get a Matplotlib Toolbar for the current plot instance, and set toolbar actions (pan/zoom) specific to this plot + toolbar.actions() supports indexing, with the following default buttons at the specified index: + 1: Home + 2: Back + 3: Forward + 4: Pan + 5: Zoom + 6: Configure Sub-plots + 7: Edit axis, curve etc.. + 8: Save the figure + Parameters ---------- [parent] @@ -494,5 +598,12 @@ def get_toolbar(self, parent=None) -> QtWidgets.QToolBar: toolbar.actions()[5].triggered.connect(self.toggle_zoom) return toolbar - def __getitem__(self, item): - return self._axes[item] + def __getitem__(self, index): + return self.axes[index] + + def __iter__(self): + for axes in self.axes: + yield axes + + def __len__(self): + return len(self.axes) diff --git a/dgp/lib/project.py b/dgp/lib/project.py index ff173dd..58bc4d8 100644 --- a/dgp/lib/project.py +++ b/dgp/lib/project.py @@ -11,7 +11,7 @@ from dgp.lib.meterconfig import MeterConfig, AT1Meter from dgp.lib.etc import gen_uuid -from dgp.lib.types import Location, StillReading, FlightLine, TreeItem +from dgp.lib.types import FlightLine, TreeItem, DataFile, PlotCurve import dgp.lib.eotvos as eov """ @@ -23,6 +23,17 @@ configurations and settings, project specific files and imports, and the ability to segment a project into individual flights and flight lines. +Guiding Principles: +This module has been designed to be explicitly independant of Qt, primarly because it is tricky or impossible to pickle +many Qt objects. This also in theory means that the classes contained within can be utilized for other uses, without +relying on the specific Qt GUI package. +Because of this, some abstraction has been necesarry particulary in the models.py class, which acts as a bridge between +the Classes in this module, and the Qt GUI - providing the required interfaces to display and interact with the project +from a graphical user interface (Qt). +Though there is no dependence on Qt itself, there are a few methods e.g. the data() method in several classes, that are +particular to our Qt GUI - specifically they return internal data based on a 'role' parameter, which is simply an int +passed by a Qt Display Object telling the underlying code which data is being requested for a particular display type. + Workflow: User creates new project - enters project name, description, and location to save project. - User can additionaly define survey parameters specific to the project @@ -45,8 +56,7 @@ def can_pickle(attribute): - """Helper function used by __getstate__ to determine if an attribute should be pickled.""" - # TODO: As necessary change this to check against a list of un-pickleable types + """Helper function used by __getstate__ to determine if an attribute should/can be pickled.""" no_pickle = [logging.Logger, DataFrame] for invalid in no_pickle: if isinstance(attribute, invalid): @@ -98,7 +108,7 @@ def __init__(self, path: pathlib.Path, name: str="Untitled Project", description self.log.debug("Gravity Project Initialized") - def load_data(self, uid: str, prefix: str): + def load_data(self, uid: str, prefix: str='data'): """ Load data from the project HDFStore (HDF5 format datafile) by prefix and uid. @@ -107,6 +117,7 @@ def load_data(self, uid: str, prefix: str): uid : str 32 digit hexadecimal unique identifier for the file to load. prefix : str + Deprecated - parameter reserved while testing compatibility Data type prefix, 'gps' or 'gravity' specifying the HDF5 group to retrieve the file from. Returns @@ -137,7 +148,7 @@ def get_meter(self, name): def import_meter(self, path: pathlib.Path): """Import a meter configuration from an ini file and add it to the sensors dict""" - # TODO: Way to construct different meter types (other than AT1 meter) dynamically + # TODO: Need to construct different meter types (other than AT1 meter) dynamically if path.exists(): try: meter = AT1Meter.from_ini(path) @@ -282,9 +293,10 @@ def __init__(self, parent: GravityProject, name: str, meter: MeterConfig=None, * # If uuid is passed use the value else assign new uuid # the letter 'f' is prepended to the uuid to ensure that we have a natural python name # as python variables cannot start with a number + self.log = logging.getLevelName(__name__) self._parent = parent self.name = name - self._uid = kwargs.get('uuid', gen_uuid('f')) + self._uid = kwargs.get('uuid', gen_uuid('flt')) self._icon = ':images/assets/flight_icon.png' self.meter = meter if 'date' in kwargs: @@ -309,7 +321,15 @@ def __init__(self, parent: GravityProject, name: str, meter: MeterConfig=None, * self.flight_timeshift = 0 + # Issue #36 Plotting data channels + self._channels = {} # {uid: (file_uid, label), ...} + self._plotted_channels = {} # {uid: axes_index, ...} + self._default_plot_map = {'gravity': 0, 'long': 1, 'cross': 1} + + self._data_cache = {} # {data_uid: DataFrame, ...} + self.lines = Container(ctype=FlightLine, parent=self, name='Flight Lines') + self._data = Container(ctype=DataFile, parent=self, name='Data Files') @property def uid(self): @@ -335,7 +355,7 @@ def data(self, role=None): @property def children(self): """Yield appropriate child objects for display in project Tree View""" - for child in [self.lines, self._gpsdata_uid, self._gravdata_uid]: + for child in [self.lines, self._data]: yield child @property @@ -344,7 +364,7 @@ def gps(self): return if self._gpsdata is None: self.log.warning("Loading gps data from HDFStore.") - self._gpsdata = self.parent.load_data(self._gpsdata_uid, 'gps') + self._gpsdata = self.parent.load_data(self._gpsdata_uid) return self._gpsdata @gps.setter @@ -373,11 +393,10 @@ def gravity(self): pandas DataFrame containing Gravity Data """ if self._gravdata_uid is None: - return + return None if self._gravdata is None: self.log.warning("Loading gravity data from HDFStore.") - self._gravdata = self.parent.load_data(self._gravdata_uid, - 'gravity') + self._gravdata = self.parent.load_data(self._gravdata_uid) return self._gravdata @gravity.setter @@ -401,7 +420,6 @@ def eotvos(self): gps_data = self.gps # WARNING: It is vital to use the .values of the pandas Series, otherwise the eotvos func # does not work properly for some reason - # TODO: Find out why that is ^ index = gps_data['lat'].index lat = gps_data['lat'].values lon = gps_data['long'].values @@ -411,8 +429,54 @@ def eotvos(self): ev_frame = DataFrame(ev_corr, index=index, columns=['eotvos']) return ev_frame - def get_channel_data(self, channel): - return self.gravity[channel] + @property + def channels(self): + """Return data channels as map of {uid: label, ...}""" + return {k: self._channels[k][1] for k in self._channels} + + def update_series(self, line: PlotCurve, action: str): + """Update the Flight state tracking for plotted data channels""" + self.log.info("Doing {action} on line {line} in {flt}".format(action=action, line=line.label, flt=self.name)) + if action == 'add': + self._plotted_channels[line.uid] = line.axes + elif action == 'remove': + try: + del self._plotted_channels[line.uid] + except KeyError: + self.log.error("No plotted line to remove") + + def get_plot_state(self): + # Return: {uid: (label, axes), ...} + state = {} + # TODO: Could refactor into dict comp + for uid in self._plotted_channels: + state[uid] = self._channels[uid][1], self._plotted_channels[uid] + return state + + def get_channel_data(self, uid: str): + data_uid, field = self._channels[uid] + if data_uid in self._data_cache: + return self._data_cache[data_uid][field] + else: + self.log.warning("Loading datafile {} from HDF5 Store".format(data_uid)) + self._data_cache[data_uid] = self.parent.load_data(data_uid) + return self.get_channel_data(uid) + + def add_data(self, data: DataFile): + # Redundant? - apparently - as long as the model does its job + # self._data.add_child(data) + + # Called to update GUI Tree + self.parent.update('add', data, self._data.uid) + + for col in data.fields: + col_uid = gen_uuid('col') + self._channels[col_uid] = data.uid, col + # If defaults are specified then add them to the plotted_channels state + if col in self._default_plot_map: + self._plotted_channels[col_uid] = self._default_plot_map[col] + print("Plotted: ", self._plotted_channels) + print(self._channels) def add_line(self, start: datetime, stop: datetime, uid=None): """Add a flight line to the flight by start/stop index and sequence number""" @@ -426,7 +490,12 @@ def add_line(self, start: datetime, stop: datetime, uid=None): def remove_line(self, uid): """ Remove a flight line """ - return self.lines.remove_child(self.lines[uid]) + self.lines.remove_child(self.lines[uid]) + self.parent.update('remove', uid=uid) + + def clear_lines(self): + """Removes all Lines from Flight""" + self.lines.clear() def __iter__(self): """ @@ -461,7 +530,8 @@ def __setstate__(self, state): class Container(TreeItem): - ctypes = {Flight, MeterConfig, FlightLine} + # Arbitrary list of permitted types + ctypes = {Flight, MeterConfig, FlightLine, DataFile} def __init__(self, ctype, parent, *args, **kwargs): """ @@ -491,7 +561,7 @@ def __init__(self, ctype, parent, *args, **kwargs): """ assert ctype in Container.ctypes # assert parent is not None - self._uid = gen_uuid('c') + self._uid = gen_uuid('box') self._parent = parent self._ctype = ctype self._name = kwargs.get('name', self._ctype.__name__) @@ -529,11 +599,15 @@ def data(self, role=None): return "Container for {} type objects.".format(self._name) return self._name - # TODO: Implement recursive search function to locate child/object by UID in the tree. - def child(self, uid): return self._children[uid] + def clear(self): + """Remove all items from the container.""" + del self._children + self._children = {} + + def add_child(self, child) -> bool: """ Add a child object to the container. @@ -638,7 +712,7 @@ def data(self, role=None): return "{} :: <{}>".format(self.name, self.projectdir.resolve()) # TODO: Move this into the GravityProject base class? - # Although we use flight_uid here, this could be abstracted however. + # Although we use flight_uid here, this could be abstracted. def add_data(self, df: DataFrame, path: pathlib.Path, dtype: str, flight_uid: str): """ Add an imported DataFrame to a specific Flight in the project. @@ -669,17 +743,22 @@ def add_data(self, df: DataFrame, path: pathlib.Path, dtype: str, flight_uid: st self.log.debug("Ingesting data and exporting to hdf5 store") # Fixes NaturalNameWarning by ensuring first char is letter ('f'). - file_uid = 'f' + uuid.uuid4().hex[1:] + file_uid = gen_uuid('dat') with HDFStore(str(self.hdf_path)) as store: # Separate data into groups by data type (GPS & Gravity Data) # format: 'table' pytables format enables searching/appending, fixed is more performant. - store.put('{typ}/{uid}'.format(typ=dtype, uid=file_uid), df, format='fixed', data_columns=True) + store.put('data/{uid}'.format(uid=file_uid), df, format='fixed', data_columns=True) # Store a reference to the original file path self.data_map[file_uid] = path try: flight = self.get_flight(flight_uid) + + flight.add_data(DataFile(file_uid, path, [col for col in df.keys()], dtype)) if dtype == 'gravity': + if flight.gravity is not None: + print("Clearing old FlightLines") + flight.clear_lines() flight.gravity = file_uid elif dtype == 'gps': flight.gps = file_uid @@ -687,7 +766,8 @@ def add_data(self, df: DataFrame, path: pathlib.Path, dtype: str, flight_uid: st except KeyError: return False - def update(self, action: str, item, uid=None) -> bool: + def update(self, action: str, item=None, uid=None) -> bool: + """Used to update the wrapping (parent) ProjectModel of this project for GUI display""" if self.parent is not None: print("Calling update on parent model with params: {} {} {}".format(action, item, uid)) self.parent.update(action, item, uid) diff --git a/dgp/lib/types.py b/dgp/lib/types.py index b69cbf7..2881da8 100644 --- a/dgp/lib/types.py +++ b/dgp/lib/types.py @@ -3,6 +3,9 @@ from abc import ABC, abstractmethod from collections import namedtuple +from matplotlib.lines import Line2D +from pandas import Series + from dgp.lib.etc import gen_uuid """ @@ -18,11 +21,9 @@ StillReading = namedtuple('StillReading', ['gravity', 'location', 'time']) -# FlightLine = namedtuple('FlightLine', ['uid', 'sequence', 'file_ref', 'start', 'end', 'parent']) - DataCurve = namedtuple('DataCurve', ['channel', 'data']) -# DataPacket = namedtuple('DataPacket', ['data', 'path', 'dtype']) +DataFile = namedtuple('DataFile', ['uid', 'filename', 'fields', 'dtype']) class TreeItem(ABC): @@ -56,6 +57,46 @@ def __str__(self): pass +class PlotCurve: + def __init__(self, uid: str, data: Series, label: str=None, axes: int=0, color: str=None): + self._uid = uid + self._data = data + self._label = label + if label is None: + self._label = self._data.name + self.axes = axes + self._line2d = None + self._changed = False + + @property + def uid(self) -> str: + return self._uid + + @property + def data(self) -> Series: + return self._data + + @data.setter + def data(self, value: Series): + self._changed = True + self._data = value + + @property + def label(self) -> str: + return self._label + + @property + def line2d(self): + return self._line2d + + @line2d.setter + def line2d(self, value: Line2D): + assert isinstance(value, Line2D) + print("Updating line in PlotCurve: ", self._label) + self._line2d = value + print(self._line2d) + + class FlightLine(TreeItem): def __init__(self, start, stop, sequence, file_ref, uid=None, parent=None): if uid is None: From 93e03432df249b064c1020ef6697d5013b2283ce Mon Sep 17 00:00:00 2001 From: chris Date: Mon, 13 Nov 2017 12:50:29 +1300 Subject: [PATCH 026/236] ENH: Added label functionality for flight lines A right-click context menu allows the user to set a label associated with any flight line. --- dgp/gui/dialogs.py | 28 +++++++++++ dgp/gui/ui/set_line_label.ui | 94 +++++++++++++++++++++++++++++++++++ dgp/lib/plotter.py | 95 ++++++++++++++++++++++++++++++++---- 3 files changed, 208 insertions(+), 9 deletions(-) create mode 100644 dgp/gui/ui/set_line_label.ui diff --git a/dgp/gui/dialogs.py b/dgp/gui/dialogs.py index 3fbffc3..143c222 100644 --- a/dgp/gui/dialogs.py +++ b/dgp/gui/dialogs.py @@ -21,6 +21,7 @@ flight_dialog, _ = loadUiType('dgp/gui/ui/add_flight_dialog.ui') project_dialog, _ = loadUiType('dgp/gui/ui/project_dialog.ui') info_dialog, _ = loadUiType('dgp/gui/ui/info_dialog.ui') +line_label_dialog, _ = loadUiType('dgp/gui/ui/set_line_label.ui') class BaseDialog(QtWidgets.QDialog): @@ -368,3 +369,30 @@ def setModel(self, model): def accept(self): self.updates = self._model.updates super().accept() + +class SetLineLabelDialog(QtWidgets.QDialog, line_label_dialog): + def __init__(self, label): + super().__init__() + self.setupUi(self) + + self._label = label + + if self._label is not None: + self.label_txt.setText(self._label) + self.button_box.accepted.connect(self.accept) + self.button_box.rejected.connect(self.reject) + + def accept(self): + text = self.label_txt.text().strip() + if text: + self._label = text + else: + self._label = None + super().accept() + + def reject(self): + super().reject() + + @property + def label_text(self): + return self._label diff --git a/dgp/gui/ui/set_line_label.ui b/dgp/gui/ui/set_line_label.ui new file mode 100644 index 0000000..de29d37 --- /dev/null +++ b/dgp/gui/ui/set_line_label.ui @@ -0,0 +1,94 @@ + + + Dialog + + + + 0 + 0 + 310 + 73 + + + + Set Line Label + + + true + + + + + 140 + 40 + 161 + 32 + + + + Qt::Horizontal + + + QDialogButtonBox::Cancel|QDialogButtonBox::Ok + + + + + + 10 + 10 + 60 + 16 + + + + Line label: + + + + + + 80 + 10 + 221 + 21 + + + + + + + + button_box + accepted() + Dialog + accept() + + + 248 + 254 + + + 157 + 274 + + + + + button_box + rejected() + Dialog + reject() + + + 316 + 260 + + + 286 + 274 + + + + + diff --git a/dgp/lib/plotter.py b/dgp/lib/plotter.py index 6a2f211..81efdcc 100644 --- a/dgp/lib/plotter.py +++ b/dgp/lib/plotter.py @@ -29,6 +29,7 @@ from dgp.lib.types import PlotCurve from dgp.lib.project import Flight +from dgp.gui.dialogs import SetLineLabelDialog class BasePlottingCanvas(FigureCanvas): @@ -72,6 +73,7 @@ def generate_subplots(self, rows: int) -> None: # sp.get_xaxis().set_major_formatter(DateFormatter('%H:%M:%S')) sp.name = 'Axes {}'.format(i) # sp.callbacks.connect('xlim_changed', set_x_formatter) + sp.callbacks.connect('ylim_changed', self._on_ylim_changed) self.axes.append(sp) i += 1 @@ -144,6 +146,10 @@ def __init__(self, flight, n=1, fid=None, title=None, parent=None): self._pop_menu = QMenu(self) self._pop_menu.addAction(QAction('Remove', self, triggered=self._remove_patch)) + # self._pop_menu.addAction(QAction('Set Label', self, + # triggered=self._label_patch)) + self._pop_menu.addAction(QAction('Set Label', self, + triggered=self._label_patch)) def update_plot(self): raise NotImplementedError @@ -166,12 +172,63 @@ def _remove_patch(self, partners): while partners: patch_group = partners.pop() patch_group['rect'].remove() + if patch_group['label'] is not None: + patch_group['label'].remove() self.rects.remove(partners) self.draw() self.line_changed.emit(LineUpdate(flight_id=self._flight_id, action='remove', uid=uid, start=start, stop=stop, label=None)) self._selected_patch = None + def _label_patch(self, label): + if self._selected_patch is not None: + partners = self._selected_patch + current_label = partners[0]['label'] + if current_label is not None: + dialog = SetLineLabelDialog(current_label.get_text()) + else: + dialog = SetLineLabelDialog(None) + if dialog.exec_(): + label = dialog.label_text + else: + return + else: + return + + for p in partners: + rx = p['rect'].get_x() + cx = rx + p['rect'].get_width() * 0.5 + axes = p['rect'].axes + ylim = axes.get_ylim() + cy = ylim[0] + abs(ylim[1] - ylim[0]) * 0.5 + axes = p['rect'].axes + + if label is not None: + if p['label'] is not None: + p['label'].set_text(label) + else: + p['label'] = axes.annotate(label, + xy=(cx, cy), + weight='bold', + fontsize=6, + ha='center', + va='center', + annotation_clip=False) + else: + if p['label'] is not None: + p['label'].remove() + p['label'] = None + + self.draw() + + def _move_patch_label(self, attr): + rx = attr['rect'].get_x() + cx = rx + attr['rect'].get_width() * 0.5 + axes = attr['rect'].axes + ylim = axes.get_ylim() + cy = ylim[0] + abs(ylim[1] - ylim[0]) * 0.5 + attr['label'].set_position((cx, cy)) + def draw(self): self.plotted = True # self.figure.canvas.draw() @@ -262,7 +319,7 @@ def draw_patch(self, start, stop, uid): xstop = date2num(stop) width = xstop - xstart height = ylim[1] - ylim[0] - c_rect = Rectangle((xstart, ylim[0]), width, height*2, alpha=0.2) + c_rect = Rectangle((xstart, ylim[0]), width, height, alpha=0.2) caxes.add_patch(c_rect) caxes.draw_artist(caxes.patch) @@ -276,7 +333,7 @@ def draw_patch(self, start, stop, uid): continue ylim = ax.get_ylim() height = ylim[1] - ylim[0] - a_rect = Rectangle((xstart, ylim[0]), width, height * 2, alpha=0.1, picker=True) + a_rect = Rectangle((xstart, ylim[0]), width, height, alpha=0.1, picker=True) ax.add_patch(a_rect) ax.draw_artist(ax.patch) left = num2date(a_rect.get_x()) @@ -321,12 +378,13 @@ def onclick(self, event: MouseEvent): if event.button == 3: # Right click for partners in self.rects: - patch = partners[0]['rect'] - hit, _ = patch.contains(event) - if hit: - cursor = QCursor() - self._selected_patch = partners - self._pop_menu.popup(cursor.pos()) + for p in partners: + patch = p['rect'] + hit, _ = patch.contains(event) + if hit: + cursor = QCursor() + self._selected_patch = partners + self._pop_menu.popup(cursor.pos()) return else: @@ -343,6 +401,8 @@ def onclick(self, event: MouseEvent): for attrs in partners: rect = attrs['rect'] rect.set_animated(True) + label = attrs['label'] + label.set_animated(True) r_canvas = rect.figure.canvas r_axes = rect.axes # type: Axes r_canvas.draw() @@ -409,7 +469,7 @@ def _move_rect(self, event): dx = event.xdata - xclick for attr in partners: rect = attr['rect'] - + label = attr['label'] if self._stretching is not None: if self._stretching == 'left': if width - dx > 0: @@ -421,10 +481,13 @@ def _move_rect(self, event): else: rect.set_x(x0 + dx) + self._move_patch_label(attr) + canvas = rect.figure.canvas axes = rect.axes canvas.restore_region(attr['bg']) axes.draw_artist(rect) + axes.draw_artist(label) canvas.blit(axes.bbox) def _near_edge(self, event, prox=0.0005): @@ -481,6 +544,8 @@ def onrelease(self, event: MouseEvent): for attrs in partners: rect = attrs['rect'] rect.set_animated(False) + label = attrs['label'] + label.set_animated(False) rect.axes.draw_artist(rect) attrs['bg'] = None # attrs['left'] = num2date(rect.get_x()) @@ -525,6 +590,18 @@ def get_time_delta(x0, x1): """Return a time delta from a plot axis limit""" return num2date(x1) - num2date(x0) + def _on_ylim_changed(self, changed: Axes): + for partners in self.rects: + for attr in partners: + if attr['rect'].axes == changed: + # reset rectangle sizes + ylim = changed.get_ylim() + attr['rect'].set_y(ylim[0]) + attr['rect'].set_height(abs(ylim[1] - ylim[0])) + + # reset label positions + self._move_patch_label(attr) + def _on_xlim_changed(self, changed: Axes) -> None: """ When the xlim changes (width of the graph), we want to apply a decimation algorithm to the From b507c45c2951867afcfb8cfad9a7468432e499e6 Mon Sep 17 00:00:00 2001 From: chris Date: Thu, 16 Nov 2017 16:41:27 +1300 Subject: [PATCH 027/236] BUG: Fixed several bugs where Annotation attributes were referenced when a label was not set. --- dgp/lib/plotter.py | 19 +++++++++++-------- 1 file changed, 11 insertions(+), 8 deletions(-) diff --git a/dgp/lib/plotter.py b/dgp/lib/plotter.py index 81efdcc..a678786 100644 --- a/dgp/lib/plotter.py +++ b/dgp/lib/plotter.py @@ -402,7 +402,8 @@ def onclick(self, event: MouseEvent): rect = attrs['rect'] rect.set_animated(True) label = attrs['label'] - label.set_animated(True) + if label is not None: + label.set_animated(True) r_canvas = rect.figure.canvas r_axes = rect.axes # type: Axes r_canvas.draw() @@ -481,13 +482,15 @@ def _move_rect(self, event): else: rect.set_x(x0 + dx) - self._move_patch_label(attr) + if attr['label'] is not None: + self._move_patch_label(attr) canvas = rect.figure.canvas axes = rect.axes canvas.restore_region(attr['bg']) axes.draw_artist(rect) - axes.draw_artist(label) + if attr['label'] is not None: + axes.draw_artist(label) canvas.blit(axes.bbox) def _near_edge(self, event, prox=0.0005): @@ -545,11 +548,10 @@ def onrelease(self, event: MouseEvent): rect = attrs['rect'] rect.set_animated(False) label = attrs['label'] - label.set_animated(False) + if label is not None: + label.set_animated(False) rect.axes.draw_artist(rect) attrs['bg'] = None - # attrs['left'] = num2date(rect.get_x()) - # attrs['right'] = num2date(rect.get_x() + rect.get_width()) uid = partners[0]['uid'] first_rect = partners[0]['rect'] @@ -599,8 +601,9 @@ def _on_ylim_changed(self, changed: Axes): attr['rect'].set_y(ylim[0]) attr['rect'].set_height(abs(ylim[1] - ylim[0])) - # reset label positions - self._move_patch_label(attr) + if attr['label'] is not None: + # reset label positions + self._move_patch_label(attr) def _on_xlim_changed(self, changed: Axes) -> None: """ From d3f1e7d4bc7ef7bcec9fc129eab5d31938cc9e4f Mon Sep 17 00:00:00 2001 From: Zac Brady Date: Mon, 20 Nov 2017 09:09:06 -0700 Subject: [PATCH 028/236] Feature/model design (#49) * ENH/TST: New TreeItem Class design and tests. Added new TreeItem and interface in dgp/lib/types.py. The Abstract base AbstractTreeItem is designed to allow polymorphic use of classes derived from it, providing the required methods for use in a QT TreeView or similar model. The TreeItem implements AbstractTreeItem, providing default implementations for the functions defined in the Abstract class. The goal of this branch is to remove dependence on the ProjectItem class in dgp/gui/models.py, which currently provides a wrapper for objects added to the ProjectModel. The idea is then that any class/object to be displayed in the GUI via a QT model can inherit from TreeItem, and minimally implement the data() method. A higher level of control can be implemented by the inherting class over its display in the UI by overriding or extending methods from TreeItem. * CLN: Reformat models/project/types modules to 80 char lines. Reformatted project files to conform better with PEP8 80 char line widths. Removed old comments/general code cleanup. * ENH/CLN: Rewrite of ProjectModel and supporting code ENH: This commit rewrites a large portion of the ProjectModel and TreeItem classes, designed to improve the usability and reduce the complexity introduced by using a wrapper class previously (ProjectItem). The TreeItem class is designed to be inherited from for objects that need to be displayed in a GUI TreeView. TreeItem defines the default implementation sufficient for most objects to immediately be useable in the ProjectModel, only the data() method must be overriden to tell the model what to display for various roles. TST: A basic test suite has been added to test the functionality of the new TreeItem class. More rigorous tests should be added in the future. CLN: Various project files have also been cleaned up to conform to a 80 character line width standard. Deprecated code and comments have also been removed in various files. * FIX: Compatibility with Py3.5 change IntFlag to IntEnum. * ENH/FIX: Enhanced new model code after testing. Fixed bugs and enhanced new model code after further UI testing. Added ability to specify styles for individual TreeItems (icon, bg/fg color). Enhanced update code for adding/removing/modifying items in Tree Model - no longer need to manually specify update when adding/removing. If modifying an attribute, a setter property should be used to call super().update() if the attribute affects the visual appearance of an item. Main window UI cleanup. Adjusted margins of some widgets/panels for cleaner look. --- dgp/gui/main.py | 197 +++------ dgp/gui/models.py | 439 ++++++------------- dgp/gui/qtenum.py | 52 +++ dgp/gui/ui/main_window.ui | 101 ++++- dgp/lib/meterconfig.py | 29 +- dgp/lib/project.py | 556 ++++++++++++------------- dgp/lib/types.py | 343 +++++++++++++-- examples/example_projectmodel.py | 63 --- examples/treemodel_integration_test.py | 109 +++++ examples/treeview_testing.ui | 57 +++ tests/test_project.py | 2 +- tests/test_treemodel.py | 109 +++++ 12 files changed, 1204 insertions(+), 853 deletions(-) create mode 100644 dgp/gui/qtenum.py delete mode 100644 examples/example_projectmodel.py create mode 100644 examples/treemodel_integration_test.py create mode 100644 examples/treeview_testing.ui create mode 100644 tests/test_treemodel.py diff --git a/dgp/gui/main.py b/dgp/gui/main.py index 4d9045a..fe11894 100644 --- a/dgp/gui/main.py +++ b/dgp/gui/main.py @@ -16,11 +16,10 @@ import dgp.lib.project as prj from dgp.gui.loader import LoadFile from dgp.lib.plotter import LineGrabPlot, LineUpdate -from dgp.lib.types import PlotCurve -from dgp.lib.etc import gen_uuid +from dgp.lib.types import PlotCurve, AbstractTreeItem from dgp.gui.utils import ConsoleHandler, LOG_FORMAT, LOG_LEVEL_MAP, get_project_file from dgp.gui.dialogs import ImportData, AddFlight, CreateProject, InfoDialog, AdvancedImport -from dgp.gui.models import TableModel, ProjectModel, ProjectItem +from dgp.gui.models import TableModel, ProjectModel # Load .ui form @@ -64,50 +63,26 @@ def __init__(self, project: Union[prj.GravityProject, prj.AirborneProject]=None, # Setup Project self.project = project # Experimental: use the _model to affect changes to the project. - self._model = ProjectModel(project) + # self._model = ProjectModel(project) # See http://doc.qt.io/qt-5/stylesheet-examples.html#customizing-qtreeview # Set Stylesheet customizations for GUI Window self.setStyleSheet(""" QTreeView::item { - } - QTreeView::branch:has-siblings:adjoins-them { - /*border: 1px solid black; */ } QTreeView::branch { - background: palette(base); - } - - QTreeView::branch:has-siblings:!adjoins-item { - /*background: cyan;*/ - } - - QTreeView::branch:has-siblings:adjoins-item { - background: orange; - } - - QTreeView::branch:!has-children:!has-siblings:adjoins-item { - background: blue; + /*background: palette(base);*/ } - QTreeView::branch:closed:has-children:has-siblings { + QTreeView::branch:closed:has-children { background: none; image: url(:/images/assets/branch-closed.png); } - - QTreeView::branch:has-children:!has-siblings:closed { - image: url(:/images/assets/branch-closed.png); - } - - QTreeView::branch:open:has-children:has-siblings { + QTreeView::branch:open:has-children { background: none; image: url(:/images/assets/branch-open.png); } - - QTreeView::branch:open:has-children:!has-siblings { - image: url(:/images/assets/branch-open.png); - } """) # Initialize plotter canvas @@ -117,13 +92,16 @@ def __init__(self, project: Union[prj.GravityProject, prj.AirborneProject]=None, self.gps_plot_layout.addWidget(self.gps_stack) # Initialize Variables - self.import_base_path = pathlib.Path('../tests').resolve() + # self.import_base_path = pathlib.Path('../tests').resolve() + self.import_base_path = pathlib.Path('~').expanduser().joinpath( + 'Desktop') self.current_flight = None # type: prj.Flight self.current_flight_index = QtCore.QModelIndex() # type: QtCore.QModelIndex self.tree_index = None # type: QtCore.QModelIndex self.flight_plots = {} # Stores plotter objects for flights - self._flight_channel_models = {} # Store StandardItemModels for Flight channel selection + # Store StandardItemModels for Flight channel selection + self._flight_channel_models = {} self.project_tree = ProjectTreeView(parent=self, project=self.project) self.project_tree.setMinimumWidth(300) @@ -161,12 +139,18 @@ def _init_slots(self): # Project Tree View Actions # # self.prj_tree.doubleClicked.connect(self.log_tree) - self.project_tree.clicked.connect(self._on_flight_changed) + # self.project_tree.clicked.connect(self._on_flight_changed) + self.project_tree.doubleClicked.connect(self._on_flight_changed) + self.project_tree.doubleClicked.connect(self._launch_tab) # Project Control Buttons # self.prj_add_flight.clicked.connect(self.add_flight_dialog) self.prj_import_data.clicked.connect(self.import_data_dialog) + # Tab Browser Actions # + self.tab_workspace.currentChanged.connect(self._tab_changed) + self.tab_workspace.tabCloseRequested.connect(self._tab_closed) + # Channel Panel Buttons # # self.selectAllChannels.clicked.connect(self.set_channel_state) @@ -198,8 +182,8 @@ def _init_plots(self) -> None: self.gravity_stack.addWidget(widget) self.update_plot(plot, flight) - # TODO: Need to disconnect these at some point? - # Don't connect this until after self.plot_flight_main or it will trigger on initial draw + # Don't connect this until after self.plot_flight_main or it will + # trigger on initial draw plot.line_changed.connect(self._on_modified_line) self.log.debug("Initialized Flight Plot: {}".format(plot)) self.status.emit('Flight Plot {} Initialized'.format(flight.name)) @@ -209,7 +193,7 @@ def _on_modified_line(self, info): for flight in self.project.flights: if info.flight_id == flight.uid: - if info.uid in flight.lines: + if info.uid in [x.uid for x in flight.lines]: if info.action == 'modify': line = flight.lines[info.uid] line.start = info.start @@ -252,6 +236,7 @@ def _new_plot_widget(flight, rows=3): return plot, widget def populate_channel_tree(self, flight: prj.Flight=None): + self.log.debug("Populating channel tree") if flight is None: flight = self.current_flight @@ -374,13 +359,15 @@ def _on_flight_changed(self, index: QtCore.QModelIndex) -> None: qitem = index.internalPointer() if qitem is None: return - qitem_data = qitem.data(QtCore.Qt.UserRole) - if not isinstance(qitem_data, prj.Flight): - # Return as we're not interested in handling non-flight selections + if not isinstance(qitem, prj.Flight): + # TODO: Move this into a separate slot to handle double click expand + self.project_tree.setExpanded(index, + (not self.project_tree.isExpanded( + index))) return None else: - flight = qitem_data # type: prj.Flight + flight = qitem # type: prj.Flight if self.current_flight == flight: # Return as this is the same flight as previously selected @@ -409,6 +396,22 @@ def _on_flight_changed(self, index: QtCore.QModelIndex) -> None: self.update_plot(grav_plot, flight) return + def _launch_tab(self, index: QtCore.QModelIndex): + """ + TODO: This function will be responsible for launching a new flight tab. + """ + item = index.internalPointer() + if isinstance(item, prj.Flight): + self.log.info("Launching tab for object: {}".format( + index.internalPointer().uid)) + + def _tab_closed(self, index: int): + # TODO: This will handle close requests for a tab + pass + + def _tab_changed(self, index: int): + pass + # TODO: is this necessary def redraw(self, flt_id: str) -> None: """ @@ -459,7 +462,7 @@ def update_plot(plot: LineGrabPlot, flight: prj.Flight) -> None: curve = PlotCurve(channel, flight.get_channel_data(channel), label, axes) plot.add_series(curve, propogate=False) - for line in flight.lines: + for line in flight._lines: plot.draw_patch(line.start, line.stop, line.uid) queue_draw = True if queue_draw: @@ -508,7 +511,10 @@ def import_data_dialog(self) -> None: path, dtype, fields, flight = dialog.content # print("path: {} type: {}\nfields: {}\nflight: {}".format(path, dtype, fields, flight)) # Delete flight model to force update - del self._flight_channel_models[flight.uid] + try: + del self._flight_channel_models[flight.uid] + except KeyError: + pass self.import_data(path, dtype, flight, fields=fields) return @@ -588,25 +594,25 @@ def __init__(self, project=None, parent=None): super().__init__(parent=parent) self._project = project - # Dict indexes to store [flight_uid] = QItemIndex - self._indexes = {} self.log = logging.getLogger(__name__) self.setMinimumSize(QtCore.QSize(0, 300)) - self.setAlternatingRowColors(True) + self.setAlternatingRowColors(False) self.setAutoExpandDelay(1) + self.setExpandsOnDoubleClick(False) self.setRootIsDecorated(False) self.setUniformRowHeights(True) - # self.setHeaderHidden(True) + self.setHeaderHidden(True) self.setObjectName('project_tree') self.setContextMenuPolicy(QtCore.Qt.DefaultContextMenu) self._init_model() + print("Project model inited") def _init_model(self): """Initialize a new-style ProjectModel from models.py""" - model = ProjectModel(self._project) - model.rowsAboutToBeInserted.connect(self.begin_insert) - model.rowsInserted.connect(self.end_insert) + model = ProjectModel(self._project, parent=self) + # model.rowsAboutToBeInserted.connect(self.begin_insert) + # model.rowsInserted.connect(self.end_insert) self.setModel(model) self.expandAll() @@ -617,91 +623,17 @@ def end_insert(self, index, start, end): print("Finixhed inserting rows, running update") # index is parent index model = self.model() - uindex = model.index(row=start-1, parent=index) + uindex = model.index(row=start, parent=index) self.update(uindex) self.expandAll() - def generate_airborne_model(self, project: prj.AirborneProject): - """Generate a Qt Model based on the project structure.""" - raise DeprecationWarning - model = QStandardItemModel() - root = model.invisibleRootItem() - - flight_items = {} # Used to find indexes after creation - - dgs_ico = QIcon(':images/assets/dgs_icon.xpm') - flt_ico = QIcon(':images/assets/flight_icon.png') - - prj_header = QStandardItem(dgs_ico, - "{name}: {path}".format(name=project.name, - path=project.projectdir)) - prj_header.setData(project, QtCore.Qt.UserRole) - prj_header.setEditable(False) - fli_header = QStandardItem(flt_ico, "Flights") - fli_header.setEditable(False) - first_flight = None - for uid, flight in project.flights.items(): - fli_item = QStandardItem(flt_ico, "Flight: {}".format(flight.name)) - flight_items[flight.uid] = fli_item - if first_flight is None: - first_flight = fli_item - fli_item.setToolTip("UUID: {}".format(uid)) - fli_item.setEditable(False) - fli_item.setData(flight, QtCore.Qt.UserRole) - - gps_path, gps_uid = flight.gps_file - if gps_path is not None: - _, gps_fname = os.path.split(gps_path) - else: - gps_fname = '' - gps = QStandardItem("GPS: {}".format(gps_fname)) - gps.setToolTip("File Path: {}".format(gps_uid)) - gps.setEditable(False) - gps.setData(gps_uid) # For future use - - grav_path, grav_uid = flight.gravity_file - if grav_path is not None: - _, grav_fname = os.path.split(grav_path) - else: - grav_fname = '' - grav = QStandardItem("Gravity: {}".format(grav_fname)) - grav.setToolTip("File Path: {}".format(grav_path)) - grav.setEditable(False) - grav.setData(grav_uid) # For future use - - fli_item.appendRow(gps) - fli_item.appendRow(grav) - - for line in flight: - line_item = QStandardItem("Line {}:{}".format(line.start, line.end)) - line_item.setEditable(False) - fli_item.appendRow(line_item) - fli_header.appendRow(fli_item) - prj_header.appendRow(fli_header) - - meter_header = QStandardItem("Meters") - for meter in project.meters: # type: prj.AT1Meter - meter_item = QStandardItem("{}".format(meter.name)) - meter_header.appendRow(meter_item) - prj_header.appendRow(meter_header) - - root.appendRow(prj_header) - self.log.debug("Tree Model generated") - first_index = model.indexFromItem(first_flight) - - # for uid, item in flight_items.items(): - # self._indexes[uid] = model.indexFromItem(item) - self._indexes = {uid: model.indexFromItem(item) for uid, item in flight_items.items()} - - return model, first_index - def contextMenuEvent(self, event: QtGui.QContextMenuEvent, *args, **kwargs): context_ind = self.indexAt(event.pos()) # get the index of the item under the click event - context_focus = self.model().itemFromIndex(context_ind) # type: ProjectItem + context_focus = self.model().itemFromIndex(context_ind) print(context_focus.uid) - info_slot = functools.partial(self.flight_info, context_focus) - plot_slot = functools.partial(self.flight_plot, context_focus) + info_slot = functools.partial(self._info_action, context_focus) + plot_slot = functools.partial(self._plot_action, context_focus) menu = QtWidgets.QMenu() info_action = QtWidgets.QAction("Info") info_action.triggered.connect(info_slot) @@ -713,17 +645,18 @@ def contextMenuEvent(self, event: QtGui.QContextMenuEvent, *args, **kwargs): menu.exec_(event.globalPos()) event.accept() - def flight_plot(self, item): + def _plot_action(self, item): raise NotImplementedError print("Opening new plot for item") pass - def flight_info(self, item): + def _info_action(self, item): data = item.data(QtCore.Qt.UserRole) - if not (isinstance(data, prj.Flight) or isinstance(data, prj.GravityProject)): + if not (isinstance(item, prj.Flight) or isinstance(item, + prj.GravityProject)): return model = TableModel(['Key', 'Value']) - model.set_object(data) + model.set_object(item) dialog = InfoDialog(model, parent=self) dialog.exec_() print(dialog.updates) diff --git a/dgp/gui/models.py b/dgp/gui/models.py index 5431355..47b0674 100644 --- a/dgp/gui/models.py +++ b/dgp/gui/models.py @@ -1,18 +1,21 @@ # coding: utf-8 -"""Provide definitions of the models used by the Qt Application in our model/view widgets.""" +""" +Provide definitions of the models used by the Qt Application in our +model/view widgets. +""" +import logging from typing import List, Union from PyQt5 import Qt, QtCore -from PyQt5.Qt import QWidget, QModelIndex, QAbstractItemModel, QStandardItemModel +from PyQt5.Qt import QWidget, QAbstractItemModel, QStandardItemModel from PyQt5.QtCore import QModelIndex, QVariant -from PyQt5.QtGui import QIcon, QStandardItem +from PyQt5.QtGui import QIcon, QBrush, QColor, QStandardItem from PyQt5.QtWidgets import QComboBox -from dgp.lib.etc import gen_uuid -from dgp.lib.types import TreeItem, FlightLine -from dgp.lib.project import Container, AirborneProject, Flight, MeterConfig +from dgp.gui.qtenum import QtDataRoles, QtItemFlags +from dgp.lib.types import AbstractTreeItem, TreeItem class TableModel(QtCore.QAbstractTableModel): @@ -80,7 +83,8 @@ def flags(self, index: QModelIndex): flags = QtCore.Qt.ItemIsSelectable | QtCore.Qt.ItemIsEnabled if index.row() == 0 and self._editheader: flags = flags | QtCore.Qt.ItemIsEditable - elif self._editable is not None and index.column() in self._editable: # Allow the values column to be edited + # Allow the values column to be edited + elif self._editable is not None and index.column() in self._editable: flags = flags | QtCore.Qt.ItemIsEditable return flags @@ -101,331 +105,164 @@ def setData(self, index: QtCore.QModelIndex, value: QtCore.QVariant, role=None): return False -class ProjectItem: - """ - ProjectItem is a wrapper for TreeItem descendants and/or simple string values, providing the necesarry interface to - be utilized as an item in an AbstractModel (specifically ProjectModel, but theoretically any class derived from - QAbstractItemModel). - Items passed to this class are evaluated, if they are subclassed from TreeItem or an instance of ProjectItem their - children (if any) will be wrapped (if not already) in a ProjectItem instance, and added as a child of this - ProjectItem, allowing the creation of a nested tree type heirarchy. - Due to the inspection of 'item's for children, this makes it effortless to create a tree from a single 'trunk', as - the descendant (children) objects of a passed object that has children, will be automatically populated into the - first ProjectItem's descendant list. - If a supplied item does not have children, i.e. it is a string or other Python type, it will be stored internally, - accessible via the 'object' property, and will be displayed to any QtView (e.g. QTreeView, QListView) as the - string representation of the item, i.e. str(item), whatever that shall produce. - """ - def __init__(self, item: Union['ProjectItem', TreeItem, str], parent: Union['ProjectItem', None]=None) -> None: +class ProjectModel(QtCore.QAbstractItemModel): + """Heirarchial (Tree) Project Model with a single root node.""" + def __init__(self, project: AbstractTreeItem, parent=None): + self.log = logging.getLogger(__name__) + super().__init__(parent=parent) + # assert isinstance(project, GravityProject) + project.model = self + root = TreeItem("root1234") + root.append_child(project) + self._root_item = root + self.layoutChanged.emit() + self.log.info("Project Tree Model initialized.") + + def update(self, action=None, obj=None, **kwargs): """ - Initialize a ProjectItem for use in a Qt View. - Parameters - ---------- - item : Union[ProjectItem, TreeItem, str] - An item to encapsulate for presentation within a Qt View (e.g. QTreeView) - ProjectItem's and TreeItem's support the data(role) method, and as such the presentation of such objects can - be more finely controlled in the implementation of the object itself. - Other objects e.g. strings are simply displayed as is, or if an unsupported object is passed, the str() of - the object is used as the display value. - parent : Union[ProjectItem, None] - The parent ProjectItem, (or None if this is the root object in a view) for this item. + This simply emits layout change events to update the view. + By calling layoutAboutToBeChanged and layoutChanged, we force an + update of the entire layout that uses this model. + This may not be as efficient as utilizing the beginInsertRows and + endInsertRows signals to specify an exact range to update, but with + the amount of data this model expects to handle, this is far less + error prone and unnoticable. """ - self._parent = parent - self._children = [] - self._object = item - # _hasdata records whether the item is a class of ProjectItem or TreeItem, and thus has a data() method. - self._hasdata = True - - if hasattr(item, 'uid'): - self._uid = item.uid - else: - self._uid = gen_uuid('prj') - - if not issubclass(item.__class__, TreeItem) or isinstance(item, ProjectItem): - self._hasdata = False - if not hasattr(item, 'children'): - return - for child in item.children: - self.append_child(child) - - @property - def children(self): - """Return generator for children of this ProjectItem""" - for child in self._children: - yield child - - @property - def object(self) -> TreeItem: - """Return the underlying class wrapped by this ProjectItem i.e. Flight""" - return self._object - - @property - def uid(self) -> Union[str, None]: - """Return the UID of the internal object if it has one, else None""" - if not self._hasdata: - return self._uid - return self.object.uid - - def search(self, uid) -> Union['ProjectItem', None]: - """ - Search for an object by UID: - If this object is the target then return self.object, - else recursively search children for a match - Parameters - ---------- - uid : str - Object Unique Identifier to search for + self.layoutAboutToBeChanged.emit() + self.log.info("ProjectModel Layout Changed") + self.layoutChanged.emit() + return - Returns - ------- - Union[ProjectItem, None]: - Returns the Item if found, otherwise None + def parent(self, index: QModelIndex) -> QModelIndex: """ - if self.uid == uid: - return self + Returns the parent QModelIndex of the given index. If the object + referenced by index does not have a parent (i.e. the root node) an + invalid QModelIndex() is constructed and returned. + e.g. - for child in self._children: - result = child.search(uid) - if result is not None: - return result - - return None - - def append_child(self, child) -> bool: - """ - Appends a child object to this ProjectItem. If the passed child is already an instance of ProjectItem, the - parent is updated to this object, and it is appended to the internal _children list. - If the object is not an instance of ProjectItem, we attempt to encapsulated it, passing self as the parent, and - append it to the _children list. Parameters ---------- - child + index: QModelIndex + index to find parent of Returns ------- - bool: - True on success - Raises - ------ - TODO: Exception on error - """ - if not isinstance(child, ProjectItem): - self._children.append(ProjectItem(child, self)) - return True - child._parent = self - self._children.append(child) - return True - - def remove_child(self, child): + QModelIndex: + Valid QModelIndex of parent if exists, else + Invalid QModelIndex() which references the root object """ - Attempts to remove a child object from the children of this ProjectItem - Parameters - ---------- - child: Union[TreeItem, str] - The underlying object of a ProjectItem object. The ProjectItem that wraps 'child' will be determined by - comparing the uid of the 'child' to the uid's of any object contained within the children of this - ProjectItem. - Returns - ------- - bool: - True on sucess - False if the child cannot be located within the children of this ProjectItem. - - """ - for subitem in self._children[:]: # type: ProjectItem - if subitem.uid == child.uid: - print("removing subitem: {}".format(subitem)) - self._children.remove(subitem) - return True - return False - - def child(self, row) -> Union['ProjectItem', None]: - """Return the child ProjectItem at the given row, or None if the index does not exist.""" - try: - return self._children[row] - except IndexError: - return None - - def indexof(self, child): - if isinstance(child, ProjectItem): - return self._children.index(child) - for item in self._children: - if item.object.uid == child.uid: - return self._children.index(item) + if not index.isValid(): + return QModelIndex() - def child_count(self): - return len(self._children) + child_item = index.internalPointer() # type: AbstractTreeItem + parent_item = child_item.parent # type: AbstractTreeItem + if parent_item == self._root_item: + return QModelIndex() + return self.createIndex(parent_item.row(), 0, parent_item) @staticmethod - def column_count(): - return 1 - - def index(self): - return self._parent.indexof(self) - - def data(self, role=None): - # Allow the object to handle data display for certain roles - if role in [QtCore.Qt.ToolTipRole, QtCore.Qt.DisplayRole, QtCore.Qt.UserRole]: - if not self._hasdata: - return str(self._object) - return self._object.data(role) - elif role == QtCore.Qt.DecorationRole: - if not self._hasdata: - return QVariant() - icon = self._object.data(role) - if icon is None: - return QVariant() - if not isinstance(icon, QIcon): - # print("Creating QIcon") - return QIcon(icon) - return icon - else: - return QVariant() # This is very important, otherwise the display gets screwed up. - - def row(self): - """Reports this item's row location within parent's children list""" - if self._parent: - return self._parent.indexof(self) - return 0 - - def parent(self): - return self._parent - - -# ProjectModel should eventually have methods to make changes to the underlying data structure, e.g. -# adding a flight, which would then update the model, without rebuilding the entire structure as -# is currently done. -# TODO: Can we inherit from AirborneProject, to create a single interface for modifying, and displaying the project? -# or vice versa -class ProjectModel(QtCore.QAbstractItemModel): - def __init__(self, project, parent=None): - super().__init__(parent=parent) - # This will recursively populate the Model as ProjectItem will inspect and create children as necessary - self._root_item = ProjectItem(project) - self._project = project - self._project.parent = self - - def update(self, action, obj, uid=None): - if action.lower() == 'add': - self.add_child(obj, uid) - elif action.lower() == 'remove': - self.remove_child(uid) - - def add_child(self, item, uid=None): + def data(index: QModelIndex, role: QtDataRoles): """ - Method to add a generic item of type Flight or MeterConfig to the project and model. - In future add ability to add sub-children, e.g. FlightLines (although possibly in - separate method). + Returns data for the requested index and role. + We do some processing here to encapsulate data within Qt Types where + necesarry, as TreeItems in general do not import Qt Modules due to + the possibilty of pickling them. Parameters ---------- - item : Union[Flight, MeterConfig] - Project Flights/Meters child object to add. - uid : str - Parent UID to which child will be added + index: QModelIndex + Model Index of item to retrieve data from + role: QtDataRoles + Role from the enumerated Qt roles in dgp/gui/qtenum.py + (Re-implemented for convenience and portability from PyQt defs) Returns ------- - bool: - True on successful addition - False if the method could not add the item, i.e. could not match the container to - insert the item. - Raises - ------ - NotImplementedError: - Raised if item is not an instance of a recognized type, currently Flight or MeterConfig + QVariant + Returns QVariant data depending on specified role. + If role is UserRole, the underlying AbstractTreeItem object is + returned """ - # If uid is provided, search for it and add the item (we won't check here for type correctness) - if uid is not None: - parent = self._root_item.search(uid) - print("Model adding child to: ", parent) - if parent is not None: - if isinstance(parent.object, Container): - parent.object.add_child(item) - # self.beginInsertRows() - parent.append_child(item) - self.layoutChanged.emit() - return True - return False - - # Otherwise, try to infer the correct parent based on the type of the item - for child in self._root_item.children: # type: ProjectItem - c_obj = child.object # type: Container - if isinstance(c_obj, Container) and issubclass(item.__class__, c_obj.ctype): - # print("matched instance in add_child") - cindex = self.createIndex(self._root_item.indexof(child), 1, child) - self.beginInsertRows(cindex, len(c_obj), len(c_obj)) - c_obj.add_child(item) - child.append_child(ProjectItem(item)) - self.endInsertRows() - self.layoutChanged.emit() - return True - print("No match on contianer for object: {}".format(item)) - return False - - def remove_child(self, uid): - item = self._root_item.search(uid) - item_index = self.createIndex(item.index(), 1, item) - parent = item.parent() - cindex = self.createIndex(0, 0, parent) - - # Execute removal - self.beginRemoveRows(cindex, item_index.row(), item_index.row()) - parent.remove_child(item) - self.endRemoveRows() - return - - @staticmethod - def data(index: QModelIndex, role: int=None): if not index.isValid(): return QVariant() + item = index.internalPointer() # type: AbstractTreeItem + data = item.data(role) - item = index.internalPointer() # type: ProjectItem - if role == QtCore.Qt.UserRole: - return item.object - else: - return item.data(role) + # To guard against cases where role is not implemented + if data is None: + return QVariant() - @staticmethod - def itemFromIndex(index: QModelIndex): - return index.internalPointer() + # Role encapsulation + if role == QtDataRoles.UserRole: + return item + if role == QtDataRoles.DecorationRole: + # Construct Decoration object from data + return QIcon(data) + if role in [QtDataRoles.BackgroundRole, QtDataRoles.ForegroundRole]: + return QBrush(QColor(data)) - def flags(self, index: QModelIndex): + return QVariant(data) + + @staticmethod + def flags(index: QModelIndex) -> QtItemFlags: + """Return the flags of an item at the specified ModelIndex""" if not index.isValid(): - return 0 + return QtItemFlags.NoItemFlags + # return index.internalPointer().flags() return QtCore.Qt.ItemIsSelectable | QtCore.Qt.ItemIsEnabled - def headerData(self, section: int, orientation, role: int=None): - if orientation == QtCore.Qt.Horizontal and role == QtCore.Qt.DisplayRole: + def headerData(self, section: int, orientation, role: + QtDataRoles=QtDataRoles.DisplayRole): + """The Root item is responsible for first row header data""" + if orientation == QtCore.Qt.Horizontal and role == QtDataRoles.DisplayRole: return self._root_item.data(role) return QVariant() - def index(self, row: int, column: int=0, parent: QModelIndex=QModelIndex()): + @staticmethod + def itemFromIndex(index: QModelIndex) -> AbstractTreeItem: + """Returns the object referenced by index""" + return index.internalPointer() + + # Experimental - doesn't work + def index_from_item(self, item: AbstractTreeItem): + """Iteratively walk through parents to generate an index""" + parent = item.parent # type: AbstractTreeItem + chain = [item] + while parent != self._root_item: + print("Parent: ", parent.uid) + chain.append(parent) + parent = parent.parent + print(chain) + idx = {} + for i, thing in enumerate(reversed(chain)): + if i == 0: + print("Index0: row", thing.row()) + idx[i] = self.index(thing.row(), 1, QModelIndex()) + else: + idx[i] = self.index(thing.row(), 1, idx[i-1]) + print(idx) + # print(idx[1].row()) + return idx[len(idx)-1] + + def index(self, row: int, column: int, parent: QModelIndex) -> QModelIndex: + """Return a QModelIndex for the item at the given row and column, + with the specified parent.""" if not self.hasIndex(row, column, parent): return QModelIndex() - if not parent.isValid(): parent_item = self._root_item else: - parent_item = parent.internalPointer() # type: ProjectItem + parent_item = parent.internalPointer() # type: AbstractTreeItem + child_item = parent_item.child(row) - if child_item: + # VITAL to compare is not None vs if child_item: + if child_item is not None: return self.createIndex(row, column, child_item) else: return QModelIndex() - def parent(self, index: QModelIndex): - if not index.isValid(): - return QModelIndex() - - child_item = index.internalPointer() # type: ProjectItem - parent_item = child_item.parent() # type: ProjectItem - if parent_item == self._root_item: - return QModelIndex() - return self.createIndex(parent_item.row(), 0, parent_item) - def rowCount(self, parent: QModelIndex=QModelIndex(), *args, **kwargs): + # *args and **kwargs are necessary to suppress Qt Warnings if parent.isValid(): - item = parent.internalPointer() # type: ProjectItem - return item.child_count() + return parent.internalPointer().child_count() else: return self._root_item.child_count() @@ -433,12 +270,6 @@ def rowCount(self, parent: QModelIndex=QModelIndex(), *args, **kwargs): def columnCount(parent: QModelIndex=QModelIndex(), *args, **kwargs): return 1 - # Highly Experimental: - # Pass on attribute calls to the _project if this class has no such attribute - # Unpickling encounters an error here (RecursionError) - # def __getattr__(self, item): - # return getattr(self._project, item, None) - # QStyledItemDelegate class SelectionDelegate(Qt.QStyledItemDelegate): @@ -446,7 +277,8 @@ def __init__(self, choices, parent=None): super().__init__(parent=parent) self._choices = choices - def createEditor(self, parent: QWidget, option: Qt.QStyleOptionViewItem, index: QModelIndex) -> QWidget: + def createEditor(self, parent: QWidget, option: Qt.QStyleOptionViewItem, + index: QModelIndex) -> QWidget: """Creates the editor widget to display in the view""" editor = QComboBox(parent) editor.setFrame(False) @@ -455,9 +287,10 @@ def createEditor(self, parent: QWidget, option: Qt.QStyleOptionViewItem, index: return editor def setEditorData(self, editor: QWidget, index: QModelIndex) -> None: - """Set the value displayed in the editor widget based on the model data at the index""" + """Set the value displayed in the editor widget based on the model data + at the index""" combobox = editor # type: QComboBox - value = str(index.model().data(index, QtCore.Qt.EditRole)) + value = str(index.model().data(index, QtDataRoles.EditRole)) index = combobox.findText(value) # returns -1 if value not found if index != -1: combobox.setCurrentIndex(index) @@ -465,7 +298,8 @@ def setEditorData(self, editor: QWidget, index: QModelIndex) -> None: combobox.addItem(value) combobox.setCurrentIndex(combobox.count() - 1) - def setModelData(self, editor: QWidget, model: QAbstractItemModel, index: QModelIndex) -> None: + def setModelData(self, editor: QWidget, model: QAbstractItemModel, + index: QModelIndex) -> None: combobox = editor # type: QComboBox value = str(combobox.currentText()) row = index.row() @@ -476,7 +310,8 @@ def setModelData(self, editor: QWidget, model: QAbstractItemModel, index: QModel model.setData(mindex, '', QtCore.Qt.EditRole) model.setData(index, value, QtCore.Qt.EditRole) - def updateEditorGeometry(self, editor: QWidget, option: Qt.QStyleOptionViewItem, index: QModelIndex) -> None: + def updateEditorGeometry(self, editor: QWidget, option: Qt.QStyleOptionViewItem, + index: QModelIndex) -> None: editor.setGeometry(option.rect) @@ -490,11 +325,11 @@ def onclick(self): pass +# Experimental: Drag-n-drop related to Issue #36 class ChannelListModel(QStandardItemModel): def __init__(self): pass - def dropMimeData(self, QMimeData, Qt_DropAction, p_int, p_int_1, QModelIndex): + def dropMimeData(self, QMimeData, Qt_DropAction, p, p1, QModelIndex): print("Mime data dropped") pass - pass diff --git a/dgp/gui/qtenum.py b/dgp/gui/qtenum.py new file mode 100644 index 0000000..6a412cd --- /dev/null +++ b/dgp/gui/qtenum.py @@ -0,0 +1,52 @@ +# coding: utf-8 + +"""This file redefines some common Qt Enumerations for easier use in code, +and to remove reliance on Qt imports in modules that do not directly +interact with Qt +See: http://pyqt.sourceforge.net/Docs/PyQt4/qt.html + +The enum.IntFlag is not introduced until Python 3.6, but the enum.IntEnum +class is functionally equivalent for our purposes. +""" + +import enum + + +class QtItemFlags(enum.IntEnum): + """Qt Item Flags""" + NoItemFlags = 0 + ItemIsSelectable = 1 + ItemIsEditable = 2 + ItemIsDragEnabled = 4 + ItemIsDropEnabled = 8 + ItemIsUserCheckable = 16 + ItemIsEnabled = 32 + ItemIsTristate = 64 + + +class QtDataRoles(enum.IntEnum): + """Qt Item Data Roles""" + # Data to be rendered as text (QString) + DisplayRole = 0 + # Data to be rendered as decoration (QColor, QIcon, QPixmap) + DecorationRole = 1 + # Data displayed in edit mode (QString) + EditRole = 2 + # Data to be displayed in a tooltip on hover (QString) + ToolTipRole = 3 + # Data to be displayed in the status bar on hover (QString) + StatusTipRole = 4 + WhatsThisRole = 5 + # Font used by the delegate to render this item (QFont) + FontRole = 6 + TextAlignmentRole = 7 + # Background color used to render this item (QBrush) + BackgroundRole = 8 + # Foreground or font color used to render this item (QBrush) + ForegroundRole = 9 + CheckStateRole = 10 + SizeHintRole = 13 + InitialSortOrderRole = 14 + + UserRole = 32 + UIDRole = 33 diff --git a/dgp/gui/ui/main_window.ui b/dgp/gui/ui/main_window.ui index df29c16..f84ccd3 100644 --- a/dgp/gui/ui/main_window.ui +++ b/dgp/gui/ui/main_window.ui @@ -28,6 +28,18 @@ + + 0 + + + 0 + + + 0 + + + 0 + @@ -40,8 +52,23 @@ QFrame::StyledPanel + + 0 + + + 0 + + + 0 + + + 0 + + + 0 + - + 0 @@ -54,6 +81,9 @@ 0 + + true + true @@ -72,7 +102,7 @@ true - GPS + Mockup Tab @@ -147,20 +177,20 @@ true - + 0 0 - 350 - 632 + 187 + 165 - 350 + 524287 524287 @@ -175,17 +205,32 @@ - + 0 0 + + 3 + + + 0 + + + 0 + + + 0 + 5 + + 3 + @@ -292,13 +337,13 @@ 524 - 300 + 246 524287 - 300 + 246 @@ -327,6 +372,21 @@ + + 5 + + + 0 + + + 0 + + + 0 + + + 0 + @@ -348,6 +408,21 @@ QFrame::Raised + + 5 + + + 6 + + + 0 + + + 0 + + + 0 + @@ -359,7 +434,7 @@ 0 - 80 + 100 @@ -483,6 +558,12 @@ 0 + + + 0 + 100 + + 1 diff --git a/dgp/lib/meterconfig.py b/dgp/lib/meterconfig.py index 183c12a..3211055 100644 --- a/dgp/lib/meterconfig.py +++ b/dgp/lib/meterconfig.py @@ -4,6 +4,8 @@ import uuid import configparser +from dgp.gui.qtenum import QtDataRoles +from dgp.lib.etc import gen_uuid from dgp.lib.types import TreeItem """ @@ -26,35 +28,20 @@ class MeterConfig(TreeItem): """ def __init__(self, name, meter_type='AT1', parent=None, **config): - # TODO: Consider other meter types, what to do about different config values etc. - self._uid = 'm{}'.format(uuid.uuid4().hex[1:]) - self._parent = parent + uid = gen_uuid('mtr') + super().__init__(uid, parent=parent) self.name = name self.type = meter_type self.config = {k.lower(): v for k, v in config.items()} - @property - def parent(self): - return self._parent - - @parent.setter - def parent(self, value): - self._parent = value - @staticmethod def from_ini(path): raise NotImplementedError - @property - def uid(self): - return self._uid - - @property - def children(self): - return [] - - def data(self, role=None): - return "{} <{}>".format(self.name, self.type) + def data(self, role: QtDataRoles): + if role == QtDataRoles.DisplayRole: + return "{} <{}>".format(self.name, self.type) + return None def __getitem__(self, item): """Allow getting of configuration values using container type syntax e.g. value = MeterConfig['key']""" diff --git a/dgp/lib/project.py b/dgp/lib/project.py index 58bc4d8..83c7d93 100644 --- a/dgp/lib/project.py +++ b/dgp/lib/project.py @@ -1,6 +1,5 @@ # coding: utf-8 -import uuid import pickle import pathlib import logging @@ -9,6 +8,7 @@ from pandas import HDFStore, DataFrame, Series +from dgp.gui.qtenum import QtItemFlags, QtDataRoles from dgp.lib.meterconfig import MeterConfig, AT1Meter from dgp.lib.etc import gen_uuid from dgp.lib.types import FlightLine, TreeItem, DataFile, PlotCurve @@ -19,44 +19,45 @@ License: Apache License V2 Overview: -project.py provides the object framework for setting up a gravity processing project, which may include project specific -configurations and settings, project specific files and imports, and the ability to segment a project into individual -flights and flight lines. +project.py provides the object framework for setting up a gravity processing +project, which may include project specific configurations and settings, +project specific files and imports, and the ability to segment a project into +individual flights and flight lines. Guiding Principles: -This module has been designed to be explicitly independant of Qt, primarly because it is tricky or impossible to pickle -many Qt objects. This also in theory means that the classes contained within can be utilized for other uses, without -relying on the specific Qt GUI package. -Because of this, some abstraction has been necesarry particulary in the models.py class, which acts as a bridge between -the Classes in this module, and the Qt GUI - providing the required interfaces to display and interact with the project -from a graphical user interface (Qt). -Though there is no dependence on Qt itself, there are a few methods e.g. the data() method in several classes, that are -particular to our Qt GUI - specifically they return internal data based on a 'role' parameter, which is simply an int -passed by a Qt Display Object telling the underlying code which data is being requested for a particular display type. +This module has been designed to be explicitly independant of Qt, primarly +because it is tricky or impossible to pickle many Qt objects. This also in +theory means that the classes contained within can be utilized for other uses, +without relying on the specific Qt GUI package. +Because of this, some abstraction has been necesarry particulary in the +models.py class, which acts as a bridge between the Classes in this module, +and the Qt GUI - providing the required interfaces to display and interact with +the project from a graphical user interface (Qt). +Though there is no dependence on Qt itself, there are a few methods e.g. the +data() method in several classes, that are particular to our Qt GUI - +specifically they return internal data based on a 'role' parameter, which is +simply an int passed by a Qt Display Object telling the underlying code which +data is being requested for a particular display type. Workflow: - User creates new project - enters project name, description, and location to save project. + User creates new project - enters project name, description, and location to + save project. - User can additionaly define survey parameters specific to the project - User can then add a Gravity Meter configuration to the project - - User then creates new flights each day a flight is flown, flight parameters are defined + - User then creates new flights each day a flight is flown, flight + parameters are defined - Data files are imported into project and associated with a flight - - Upon import the file will be converted to pandas DataFrame then written out to the - project directory as HDF5. - - - User selects between flights in GUI to view in plot, data is pulled from the Flight object + - Upon import the file will be converted to pandas DataFrame then + written out to the project directory as HDF5. + - User selects between flights in GUI to view in plot, data is pulled + from the Flight object """ -# QT ItemDataRoles -DisplayRole = 0 -DecorationRole = 1 -ToolTipRole = 3 -StatusTipRole = 4 -UserRole = 256 - def can_pickle(attribute): - """Helper function used by __getstate__ to determine if an attribute should/can be pickled.""" + """Helper function used by __getstate__ to determine if an attribute + can/should be pickled.""" no_pickle = [logging.Logger, DataFrame] for invalid in no_pickle: if isinstance(attribute, invalid): @@ -66,26 +67,29 @@ def can_pickle(attribute): return True -class GravityProject: +class GravityProject(TreeItem): """ - GravityProject will be the base class defining common values for both airborne - and marine gravity survey projects. + GravityProject will be the base class defining common values for both + airborne and marine gravity survey projects. """ - version = 0.1 # Used for future pickling compatability + version = 0.2 # Used for future pickling compatibility - def __init__(self, path: pathlib.Path, name: str="Untitled Project", description: str=None): + def __init__(self, path: pathlib.Path, name: str="Untitled Project", + description: str=None, model_parent=None): """ Initializes a new GravityProject project class Parameters ---------- path : pathlib.Path - Directory which will be used to store project configuration and data files. + Directory which will be used to store project configuration and data name : str Human readable name to call this project. description : str Short description for this project. """ + super().__init__(gen_uuid('prj'), parent=None) + self._model_parent = model_parent self.log = logging.getLogger(__name__) if isinstance(path, pathlib.Path): self.projectdir = path # type: pathlib.Path @@ -108,9 +112,22 @@ def __init__(self, path: pathlib.Path, name: str="Untitled Project", description self.log.debug("Gravity Project Initialized") - def load_data(self, uid: str, prefix: str='data'): + def data(self, role: QtDataRoles): + if role == QtDataRoles.DisplayRole: + return self.name + return None + + @property + def model(self): + return self._model_parent + + @model.setter + def model(self, value): + self._model_parent = value + + def load_data(self, uid: str, prefix: str = 'data'): """ - Load data from the project HDFStore (HDF5 format datafile) by prefix and uid. + Load data from the project HDFStore (HDF5 format datafile) by uid. Parameters ---------- @@ -118,7 +135,8 @@ def load_data(self, uid: str, prefix: str='data'): 32 digit hexadecimal unique identifier for the file to load. prefix : str Deprecated - parameter reserved while testing compatibility - Data type prefix, 'gps' or 'gravity' specifying the HDF5 group to retrieve the file from. + Data type prefix, 'gps' or 'gravity' specifying the HDF5 group to + retrieve the file from. Returns ------- @@ -136,25 +154,26 @@ def load_data(self, uid: str, prefix: str='data'): return data def add_meter(self, meter: MeterConfig) -> MeterConfig: - """Add an existing MeterConfig class to the dictionary of available meters""" + """Add an existing MeterConfig class to the dictionary of meters""" if isinstance(meter, MeterConfig): self._sensors[meter.name] = meter return self._sensors[meter.name] else: - raise ValueError("meter parameter is not an instance of MeterConfig") + raise ValueError("meter param is not an instance of MeterConfig") def get_meter(self, name): return self._sensors.get(name, None) def import_meter(self, path: pathlib.Path): - """Import a meter configuration from an ini file and add it to the sensors dict""" - # TODO: Need to construct different meter types (other than AT1 meter) dynamically + """Import a meter config from ini file and add it to the sensors dict""" + # TODO: Need to construct different meter types (other than AT1 meter) if path.exists(): try: meter = AT1Meter.from_ini(path) self._sensors[meter.name] = meter except ValueError: - raise ValueError("Meter .ini file could not be imported, check format.") + raise ValueError("Meter .ini file could not be imported, check " + "format.") else: return self._sensors[meter.name] else: @@ -166,16 +185,18 @@ def meters(self): for meter in self._sensors.values(): yield meter - def save(self, path: pathlib.Path=None): + def save(self, path: pathlib.Path = None): """ - Saves the project by pickling the project class and saving to a file specified by path. + Saves the project by pickling the project class and saving to a file + specified by path. Parameters ---------- path : pathlib.Path, optional - Optional path object to manually specify the save location for the project class object. By default if no - path is passed to the save function, the project will be saved in the projectdir directory in a file named - for the project name, with extension .d2p + Optional path object to manually specify the save location for the + project class object. By default if no path is passed to the save + function, the project will be saved in the projectdir directory in a + file named for the project name, with extension .d2p Returns ------- @@ -194,12 +215,14 @@ def save(self, path: pathlib.Path=None): @staticmethod def load(path: pathlib.Path): """ - Loads an existing project by unpickling a previously pickled project class from a file specified by path. + Loads an existing project by unpickling a previously pickled project + class from a file specified by path. Parameters ---------- path : pathlib.Path - Path object referencing the binary file containing a pickled class object e.g. Path(project.d2p). + Path object referencing the binary file containing a pickled class + object e.g. Path(project.d2p). Returns ------- @@ -219,7 +242,7 @@ def load(path: pathlib.Path): with path.open('rb') as pickled: project = pickle.load(pickled) - # Override whatever the project dir was with the directory where it was opened + # Update project directory in case project was moved project.projectdir = path.parent return project @@ -228,21 +251,25 @@ def __iter__(self): def __getstate__(self): """ - Used by the python pickle.dump method to determine if a class __dict__ member is 'pickleable' + Used by the python pickle.dump method to determine if a class __dict__ + member is 'pickleable' Returns ------- dict - Dictionary of self.__dict__ items that have been filtered using the can_pickle() function. + Dictionary of self.__dict__ items that have been filtered using the + can_pickle() function. """ return {k: v for k, v in self.__dict__.items() if can_pickle(v)} def __setstate__(self, state) -> None: """ - Used to adjust state of the class upon loading using pickle.load. This is used to reinitialize class + Used to adjust state of the class upon loading using pickle.load. This + is used to reinitialize class attributes that could not be pickled (filtered out using __getstate__). - In future this method may be used to ensure backwards compatibility with older version project classes that - are loaded using a newer software/project version. + In future this method may be used to ensure backwards compatibility with + older version project classes that are loaded using a newer + software/project version. Parameters ---------- @@ -259,25 +286,33 @@ def __setstate__(self, state) -> None: class Flight(TreeItem): """ - Define a Flight class used to record and associate data with an entire survey flight (takeoff -> landing) - This class is iterable, yielding the flightlines named tuple objects from its lines dictionary + Define a Flight class used to record and associate data with an entire + survey flight (takeoff -> landing) + This class is iterable, yielding the flightlines named tuple objects from + its lines dictionary """ - def __init__(self, parent: GravityProject, name: str, meter: MeterConfig=None, **kwargs): + + def __init__(self, project: GravityProject, name: str, + meter: MeterConfig = None, **kwargs): """ - The Flight object represents a single literal survey flight (Takeoff -> Landing) and stores various - parameters and configurations related to the flight. - The Flight class provides an easy interface to retrieve GPS and Gravity data which has been associated with it - in the project class. - Currently a Flight tracks a single GPS and single Gravity data file, if a second file is subsequently imported - the reference to the old file will be overwritten. - In future we plan on expanding the functionality so that multiple data files might be assigned to a flight, with - various operations (comparison, merge, join) able to be performed on them. + The Flight object represents a single literal survey flight + (Takeoff -> Landing) and stores various parameters and configurations + related to the flight. + The Flight class provides an easy interface to retrieve GPS and Gravity + data which has been associated with it in the project class. + Currently a Flight tracks a single GPS and single Gravity data file, if + a second file is subsequently imported the reference to the old file + will be overwritten. + In future we plan on expanding the functionality so that multiple data + files might be assigned to a flight, with various operations + (comparison, merge, join) able to be performed on them. Parameters ---------- parent : GravityProject - Parent project class which this flight belongs to. This is essential as the project stores the references - to all data files which the flight may rely upon. + Parent project class which this flight belongs to. This is essential + as the project stores the references to all data files which the + flight may rely upon. name : str Human-readable reference name for this flight. meter : MeterConfig @@ -285,27 +320,32 @@ def __init__(self, parent: GravityProject, name: str, meter: MeterConfig=None, * kwargs Arbitrary keyword arguments. uuid : uuid.uuid - Unique identifier to assign to this flight, else a uuid will be generated upon creation using the + Unique identifier to assign to this flight, else a uuid will be + generated upon creation using the uuid.uuid4() method. date : datetime.date Datetime object to assign to this flight. """ - # If uuid is passed use the value else assign new uuid - # the letter 'f' is prepended to the uuid to ensure that we have a natural python name - # as python variables cannot start with a number self.log = logging.getLevelName(__name__) - self._parent = parent + uid = kwargs.get('uuid', gen_uuid('flt')) + super().__init__(uid, parent=None) + self.name = name - self._uid = kwargs.get('uuid', gen_uuid('flt')) + self._project = project self._icon = ':images/assets/flight_icon.png' + self.style = {'icon': ':images/assets/flight_icon.png', + QtDataRoles.BackgroundRole: 'LightGray'} self.meter = meter if 'date' in kwargs: print("Setting date to: {}".format(kwargs['date'])) self.date = kwargs['date'] + else: + self.date = "No date set" self.log = logging.getLogger(__name__) - # These attributes will hold a file reference string used to retrieve data from hdf5 store. + # These attributes will hold a file reference string used to retrieve + # data from hdf5 store. self._gpsdata_uid = None # type: str self._gravdata_uid = None # type: str @@ -328,35 +368,22 @@ def __init__(self, parent: GravityProject, name: str, meter: MeterConfig=None, * self._data_cache = {} # {data_uid: DataFrame, ...} - self.lines = Container(ctype=FlightLine, parent=self, name='Flight Lines') + self._lines = Container(ctype=FlightLine, parent=self, + name='Flight Lines') self._data = Container(ctype=DataFile, parent=self, name='Data Files') + self.append_child(self._lines) + self.append_child(self._data) - @property - def uid(self): - return self._uid + def data(self, role): + if role == QtDataRoles.ToolTipRole: + return "<{name}::{uid}>".format(name=self.name, uid=self.uid) + if role == QtDataRoles.DisplayRole: + return "{name} - {date}".format(name=self.name, date=self.date) + return super().data(role) @property - def parent(self): - return self._parent - - @parent.setter - def parent(self, value): - self._parent = value - - def data(self, role=None): - if role == UserRole: - return self - if role == ToolTipRole: - return repr(self) - if role == DecorationRole: - return self._icon - return self.name - - @property - def children(self): - """Yield appropriate child objects for display in project Tree View""" - for child in [self.lines, self._data]: - yield child + def lines(self): + return self._lines @property def gps(self): @@ -364,20 +391,21 @@ def gps(self): return if self._gpsdata is None: self.log.warning("Loading gps data from HDFStore.") - self._gpsdata = self.parent.load_data(self._gpsdata_uid) + self._gpsdata = self._project.load_data(self._gpsdata_uid) return self._gpsdata @gps.setter def gps(self, value): if self._gpsdata_uid: - self.log.warning('GPS Data File already exists, overwriting with new value.') + self.log.warning('GPS Data File already exists, overwriting with ' + 'new value.') self._gpsdata = None self._gpsdata_uid = value @property def gps_file(self): try: - return self.parent.data_map[self._gpsdata_uid], self._gpsdata_uid + return self._project.data_map[self._gpsdata_uid], self._gpsdata_uid except KeyError: return None, None @@ -396,20 +424,22 @@ def gravity(self): return None if self._gravdata is None: self.log.warning("Loading gravity data from HDFStore.") - self._gravdata = self.parent.load_data(self._gravdata_uid) + self._gravdata = self._project.load_data(self._gravdata_uid) return self._gravdata @gravity.setter def gravity(self, value): if self._gravdata_uid: - self.log.warning('Gravity Data File already exists, overwriting with new value.') + self.log.warning( + 'Gravity Data File already exists, overwriting with new value.') self._gravdata = None self._gravdata_uid = value @property def gravity_file(self): try: - return self.parent.data_map[self._gravdata_uid], self._gravdata_uid + return self._project.data_map[self._gravdata_uid], \ + self._gravdata_uid except KeyError: return None, None @@ -418,8 +448,8 @@ def eotvos(self): if self.gps is None: return None gps_data = self.gps - # WARNING: It is vital to use the .values of the pandas Series, otherwise the eotvos func - # does not work properly for some reason + # WARNING: It is vital to use the .values of the pandas Series, + # otherwise the eotvos func does not work properly for some reason index = gps_data['lat'].index lat = gps_data['lat'].values lon = gps_data['long'].values @@ -436,7 +466,10 @@ def channels(self): def update_series(self, line: PlotCurve, action: str): """Update the Flight state tracking for plotted data channels""" - self.log.info("Doing {action} on line {line} in {flt}".format(action=action, line=line.label, flt=self.name)) + self.log.info( + "Doing {action} on line {line} in {flt}".format(action=action, + line=line.label, + flt=self.name)) if action == 'add': self._plotted_channels[line.uid] = line.axes elif action == 'remove': @@ -458,63 +491,65 @@ def get_channel_data(self, uid: str): if data_uid in self._data_cache: return self._data_cache[data_uid][field] else: - self.log.warning("Loading datafile {} from HDF5 Store".format(data_uid)) - self._data_cache[data_uid] = self.parent.load_data(data_uid) + self.log.warning( + "Loading datafile {} from HDF5 Store".format(data_uid)) + self._data_cache[data_uid] = self._project.load_data(data_uid) return self.get_channel_data(uid) def add_data(self, data: DataFile): - # Redundant? - apparently - as long as the model does its job - # self._data.add_child(data) - - # Called to update GUI Tree - self.parent.update('add', data, self._data.uid) + self._data.append_child(data) for col in data.fields: col_uid = gen_uuid('col') self._channels[col_uid] = data.uid, col - # If defaults are specified then add them to the plotted_channels state + # If defaults are specified then add them to the plotted_channels if col in self._default_plot_map: self._plotted_channels[col_uid] = self._default_plot_map[col] - print("Plotted: ", self._plotted_channels) - print(self._channels) + # print("Plotted: ", self._plotted_channels) + # print(self._channels) def add_line(self, start: datetime, stop: datetime, uid=None): - """Add a flight line to the flight by start/stop index and sequence number""" + """Add a flight line to the flight by start/stop index and sequence + number""" # line = FlightLine(len(self.lines), None, start, end, self) - self.log.debug("Adding line to LineContainer of flight: {}".format(self.name)) - print("Adding line to LineContainer of flight: {}".format(self.name)) - line = FlightLine(start, stop, len(self.lines) + 1, None, uid=uid, parent=self) - self.lines.add_child(line) - self.parent.update('add', line, self.lines.uid) + self.log.debug( + "Adding line to LineContainer of flight: {}".format(self.name)) + line = FlightLine(start, stop, len(self._lines) + 1, None, uid=uid, + parent=self.lines) + self._lines.append_child(line) + # self.update('add', line) return line def remove_line(self, uid): """ Remove a flight line """ - self.lines.remove_child(self.lines[uid]) - self.parent.update('remove', uid=uid) + line = self._lines[uid] + self._lines.remove_child(self._lines[uid]) + # self.update('del', line) def clear_lines(self): """Removes all Lines from Flight""" - self.lines.clear() + return + self._lines.clear() def __iter__(self): """ - Implement class iteration, allowing iteration through FlightLines in this Flight + Implement class iteration, allowing iteration through FlightLines Yields ------- FlightLine : NamedTuple Next FlightLine in Flight.lines """ - for line in self.lines: + for line in self._lines: yield line def __len__(self): - return len(self.lines) + return len(self._lines) def __repr__(self): - return "{cls}({parent}, {name}, {meter})".format(cls=type(self).__name__, - parent=self.parent, name=self.name, - meter=self.meter) + return "{cls}({parent}, {name}, {meter})".format( + cls=type(self).__name__, + parent=self.parent, name=self.name, + meter=self.meter) def __str__(self): return "Flight: {name}".format(name=self.name) @@ -535,192 +570,130 @@ class Container(TreeItem): def __init__(self, ctype, parent, *args, **kwargs): """ - Defines a generic container designed for use with models.ProjectModel, implementing the - required functions to display and contain child objects. - When used/displayed by a TreeView the default behavior is to display the ctype.__name__ - and a tooltip stating "Container for type objects". - - The Container contains only objects of type ctype, or those derived from it. Attempting - to add a child of a different type will simply fail, with the add_child method returning + Defines a generic container designed for use with models.ProjectModel, + implementing the required functions to display and contain child + objects. + When used/displayed by a TreeView the default behavior is to display the + ctype.__name__ and a tooltip stating "Container for type + objects". + + The Container contains only objects of type ctype, or those derived from + it. Attempting to add a child of a different type will simply fail, + with the add_child method returning False. Parameters ---------- ctype : Class - The object type this container will contain as children, permitted classes are: + The object type this container will contain as children, permitted + classes are: Flight FlightLine MeterConfig parent - Parent object, e.g. Gravity[Airborne]Project, Flight etc. The container will set the - 'parent' attribute of any children added to the container to this value. + Parent object, e.g. Gravity[Airborne]Project, Flight etc. The + container will set the 'parent' attribute of any children added + to the container to this value. args : [List] Optional child objects to add to the Container at instantiation kwargs Optional key-word arguments. Recognized values: - str name : override the default name of this container (which is _ctype.__name__) + str name : override the default name of this container (which is + _ctype.__name__) """ + super().__init__(uid=gen_uuid('box'), parent=parent) assert ctype in Container.ctypes # assert parent is not None - self._uid = gen_uuid('box') - self._parent = parent self._ctype = ctype self._name = kwargs.get('name', self._ctype.__name__) - self._children = {} - for arg in args: - self.add_child(arg) - - @property - def parent(self): - return self._parent - - @parent.setter - def parent(self, value): - self._parent = value + _icon = ':/images/assets/folder_open.png' + self.style = {QtDataRoles.DecorationRole: _icon, + QtDataRoles.BackgroundRole: 'LightBlue'} @property def ctype(self): return self._ctype - @property - def uid(self): - return self._uid - @property def name(self): return self._name.lower() - @property - def children(self): - for flight in self._children: - yield self._children[flight] - - def data(self, role=None): - if role == ToolTipRole: - return "Container for {} type objects.".format(self._name) - return self._name - - def child(self, uid): - return self._children[uid] - - def clear(self): - """Remove all items from the container.""" - del self._children - self._children = {} + def data(self, role: QtDataRoles): + if role == QtDataRoles.ToolTipRole: + return "Container for {} objects. <{}>".format(self._name, self.uid) + if role == QtDataRoles.DisplayRole: + return self._name + return super().data(role) - - def add_child(self, child) -> bool: + def append_child(self, child) -> None: """ Add a child object to the container. - The child object must be an instance of the ctype of the container, otherwise it will be rejected. + The child object must be an instance of the ctype of the container, + otherwise it will be rejected. Parameters ---------- child Child object of compatible type for this container. - Returns - ------- - bool: - True if add is sucessful - False if add fails (e.g. child is not a valid type for this container) + Raises + ------ + TypeError: + Raises TypeError if child is not of the permitted type defined by + this container. """ if not isinstance(child, self._ctype): - return False - if child.uid in self._children: - print("child {} already exists in container, skipping insert".format(child)) - return True - try: - child.parent = self._parent - except AttributeError: - # Can't reassign tuple attribute (may change FlightLine to class in future) - pass - self._children[child.uid] = child - return True - - def __getitem__(self, key): - return self._children[key] - - def __contains__(self, key): - return key in self._children - - def remove_child(self, child) -> bool: - """ - Remove a child object from the container. - Children are deleted by the uid key, no other comparison is executed. - Parameters - ---------- - child - - Returns - ------- - bool: - True on sucessful deletion of child - False if child.uid could not be retrieved and deleted - """ - try: - del self._children[child.uid] - print("Deleted obj uid: {} from container children".format(child.uid)) - return True - except KeyError: - return False - - def __iter__(self): - for child in self._children.values(): - yield child - - def __len__(self): - return len(self._children) + raise TypeError("Child type is not permitted in this container.") + super().append_child(child) def __str__(self): # return self._name return str(self._children) -class AirborneProject(GravityProject, TreeItem): +class AirborneProject(GravityProject): """ - A subclass of the base GravityProject, AirborneProject will define an Airborne survey - project with parameters unique to airborne operations, and defining flight lines etc. + A subclass of the base GravityProject, AirborneProject will define an + Airborne survey project with parameters unique to airborne operations, + and defining flight lines etc. - This class is iterable, yielding the Flight objects contained within its flights dictionary + This class is iterable, yielding the Flight objects contained within its + flights dictionary """ + + def __iter__(self): + pass + def __init__(self, path: pathlib.Path, name, description=None, parent=None): super().__init__(path, name, description) - self._parent = parent - # Dictionary of Flight objects keyed by the flight uuid - self._children = {'flights': Container(ctype=Flight, parent=self), - 'meters': Container(ctype=MeterConfig, parent=self)} + self._flights = Container(ctype=Flight, name="Flights", parent=self) + self.append_child(self._flights) + self._meters = Container(ctype=MeterConfig, name="Meter Configurations", + parent=self) + self.append_child(self._meters) + self.log.debug("Airborne project initialized") self.data_map = {} + # print("Project children:") + # for child in self.children: + # print(child.uid) - @property - def parent(self): - return self._parent - - @parent.setter - def parent(self, value): - self._parent = value - - @property - def children(self): - for child in self._children: - yield self._children[child] - - @property - def uid(self): - return - - def data(self, role=None): - return "{} :: <{}>".format(self.name, self.projectdir.resolve()) + def data(self, role: QtDataRoles): + if role == QtDataRoles.DisplayRole: + return "{} :: <{}>".format(self.name, self.projectdir.resolve()) + return super().data(role) # TODO: Move this into the GravityProject base class? # Although we use flight_uid here, this could be abstracted. - def add_data(self, df: DataFrame, path: pathlib.Path, dtype: str, flight_uid: str): + def add_data(self, df: DataFrame, path: pathlib.Path, dtype: str, + flight_uid: str): """ Add an imported DataFrame to a specific Flight in the project. - Upon adding a DataFrame a UUID is assigned, and together with the data type it is exported - to the project HDFStore into a group specified by data type i.e. - HDFStore.put('data_type/uuid', packet.data) - The data can then be retrieved from its respective dtype group using the UUID. - The UUID is then stored in the Flight class's data variable for the respective data_type. + Upon adding a DataFrame a UUID is assigned, and together with the data + type it is exported to the project HDFStore into a group specified by + data type i.e. + HDFStore.put('data_type/uuid', packet.data) + The data can then be retrieved from its respective dtype group using the + UUID. The UUID is then stored in the Flight class's data variable for + the respective data_type. Parameters ---------- @@ -746,15 +719,17 @@ def add_data(self, df: DataFrame, path: pathlib.Path, dtype: str, flight_uid: st file_uid = gen_uuid('dat') with HDFStore(str(self.hdf_path)) as store: - # Separate data into groups by data type (GPS & Gravity Data) - # format: 'table' pytables format enables searching/appending, fixed is more performant. - store.put('data/{uid}'.format(uid=file_uid), df, format='fixed', data_columns=True) + # format: 'table' pytables format enables searching/appending, + # fixed is more performant. + store.put('data/{uid}'.format(uid=file_uid), df, format='fixed', + data_columns=True) # Store a reference to the original file path self.data_map[file_uid] = path try: flight = self.get_flight(flight_uid) - flight.add_data(DataFile(file_uid, path, [col for col in df.keys()], dtype)) + flight.add_data( + DataFile(file_uid, path, [col for col in df.keys()], dtype)) if dtype == 'gravity': if flight.gravity is not None: print("Clearing old FlightLines") @@ -766,36 +741,33 @@ def add_data(self, df: DataFrame, path: pathlib.Path, dtype: str, flight_uid: st except KeyError: return False - def update(self, action: str, item=None, uid=None) -> bool: - """Used to update the wrapping (parent) ProjectModel of this project for GUI display""" - if self.parent is not None: - print("Calling update on parent model with params: {} {} {}".format(action, item, uid)) - self.parent.update(action, item, uid) - return True - return False + def update(self, **kwargs): + """Used to update the wrapping (parent) ProjectModel of this project for + GUI display""" + if self.model is not None: + # print("Calling update on parent model with params: {} {}".format( + # action, item)) + self.model.update(**kwargs) def add_flight(self, flight: Flight) -> None: flight.parent = self - self._children['flights'].add_child(flight) - self.update('add', flight) + self._flights.append_child(flight) + + # self._children['flights'].add_child(flight) + # self.update('add', flight) + + def remove_flight(self, flight: Flight) -> bool: + self._flights.remove_child(flight) + # self.update('del', flight, parent=flight.parent, row=flight.row()) def get_flight(self, uid): - flight = self._children['flights'].child(uid) - return flight + return self._flights.child(uid) + + @property + def count_flights(self): + return len(self._flights) @property def flights(self): - for flight in self._children['flights'].children: + for flight in self._flights: yield flight - - def __iter__(self): - return (i for i in self._children.items()) - - def __len__(self): - count = 0 - for child in self._children: - count += len(child) - return count - - def __str__(self): - return "AirborneProject: {}".format(self.name) diff --git a/dgp/lib/types.py b/dgp/lib/types.py index 2881da8..d6e1a94 100644 --- a/dgp/lib/types.py +++ b/dgp/lib/types.py @@ -1,21 +1,29 @@ # coding: utf-8 -from abc import ABC, abstractmethod +from datetime import datetime +from abc import ABCMeta, abstractmethod from collections import namedtuple +from typing import Union, Generator from matplotlib.lines import Line2D from pandas import Series from dgp.lib.etc import gen_uuid +from dgp.gui.qtenum import QtItemFlags, QtDataRoles """ Dynamic Gravity Processor (DGP) :: types.py License: Apache License V2 Overview: -types.py is a library utility module used to define custom reusable types for use in other areas of the project. -""" +types.py is a library utility module used to define custom reusable types for +use in other areas of the project. +The TreeItem and AbstractTreeItem classes are designed to be subclassed by +items for display in a QTreeView widget. The classes themselves are Qt +agnostic, meaning they can be safely pickled, and there is no dependence on +any Qt modules. +""" Location = namedtuple('Location', ['lat', 'long', 'alt']) @@ -23,11 +31,20 @@ DataCurve = namedtuple('DataCurve', ['channel', 'data']) -DataFile = namedtuple('DataFile', ['uid', 'filename', 'fields', 'dtype']) +# DataFile = namedtuple('DataFile', ['uid', 'filename', 'fields', 'dtype']) + +class AbstractTreeItem(metaclass=ABCMeta): + """ + AbstractTreeItem provides the interface definition for an object that can + be utilized within a heirarchial or tree model. + This AbstractBaseClass (ABC) defines the function signatures required by + a Tree Model implementation in QT/PyQT. + AbstractTreeItem is also utilized to enforce some level of type safety by + providing model consumers a simple way to perform type checking on + instances inherited from this class. + """ -class TreeItem(ABC): - """Abstract Base Class for an object that can be displayed in a hierarchical 'tree' view.""" @property @abstractmethod def uid(self): @@ -49,16 +66,235 @@ def children(self): pass @abstractmethod - def data(self, role=None): + def child(self, index): pass @abstractmethod - def __str__(self): + def append_child(self, child): pass + @abstractmethod + def remove_child(self, child): + pass + + @abstractmethod + def child_count(self): + pass + + @abstractmethod + def column_count(self): + pass + + @abstractmethod + def indexof(self, child): + pass + + @abstractmethod + def row(self): + pass + + @abstractmethod + def data(self, role): + pass + + @abstractmethod + def flags(self): + pass + + @abstractmethod + def update(self, **kwargs): + pass + + +class TreeItem(AbstractTreeItem): + """ + TreeItem provides default implementations for common model functions + and should be used as a base class for specialized data structures that + expect to be displayed in a QT Tree View. + """ + + def __init__(self, uid: str, parent: AbstractTreeItem=None): + + # Private BaseClass members - should be accessed via properties + self._parent = parent + self._uid = uid + self._children = [] # List is required due to need for ordering + self._child_map = {} # Used for fast lookup by UID + self._style = {} + self._style_roles = {QtDataRoles.BackgroundRole: 'bg', + QtDataRoles.ForegroundRole: 'fg', + QtDataRoles.DecorationRole: 'icon', + QtDataRoles.FontRole: 'font'} + + if parent is not None: + parent.append_child(self) + + def __str__(self): + return "".format(self._uid) + + def __len__(self): + return len(self._children) + + def __iter__(self): + for child in self._children: + yield child + + def __getitem__(self, key: Union[int, str]): + """Permit child access by ordered index, or UID""" + if not isinstance(key, (int, str)): + raise ValueError("Key must be int or str type") + if type(key) is int: + return self._children[key] + + if type(key) is str: + return self._child_map[key] + + def __contains__(self, item: AbstractTreeItem): + return item in self._children + + @property + def uid(self) -> str: + """Returns the unique identifier of this object.""" + return self._uid + + @property + def parent(self) -> Union[AbstractTreeItem, None]: + """Returns the parent of this object.""" + return self._parent + + @parent.setter + def parent(self, value: AbstractTreeItem): + """Sets the parent of this object.""" + if value is None: + self._parent = None + return + assert isinstance(value, AbstractTreeItem) + self._parent = value + self.update() + + @property + def children(self) -> Generator[AbstractTreeItem, None, None]: + """Generator property, yields children of this object.""" + for child in self._children: + yield child + + @property + def style(self): + return self._style + + @style.setter + def style(self, value: dict): + # TODO: Check for valid style params + self._style = value + + def data(self, role: QtDataRoles): + """ + Return contextual data based on supplied role. + If a role is not defined or handled by descendents they should return + None, and the model should be take this into account. + TreeType provides a basic default implementation, which will also + handle common style parameters. Descendant classes should provide + their own definition to override specific roles, and then call the + base data() implementation to handle style application. e.g. + >>> def data(self, role: QtDataRoles): + >>> if role == QtDataRoles.DisplayRole: + >>> return "Custom Display: " + self.name + >>> # Allow base class to apply styles if role not caught above + >>> return super().data(role) + """ + if role == QtDataRoles.DisplayRole: + return str(self) + if role == QtDataRoles.ToolTipRole: + return self.uid + # Allow style specification by QtDataRole or by name e.g. 'bg', 'fg' + if role in self._style: + return self._style[role] + if role in self._style_roles: + key = self._style_roles[role] + return self._style.get(key, None) + return None + + def child(self, index: Union[int, str]): + if isinstance(index, str): + return self._child_map[index] + return self._children[index] + + def append_child(self, child: AbstractTreeItem) -> None: + """ + Appends a child AbstractTreeItem to this object. An object that is + not an instance of AbstractTreeItem will be rejected and an Assertion + Error will be raised. + Likewise if a child already exists within this object, it will + silently continue without duplicating the child. + Parameters + ---------- + child: AbstractTreeItem + Child AbstractTreeItem to append to this object. + + Raises + ------ + AssertionError: + If child is not an instance of AbstractTreeItem, an Assertion + Error is raised, and the child will not be appended to this object. + """ + assert isinstance(child, AbstractTreeItem) + if child in self._children: + # Appending same child should have no effect + return + child.parent = self + self._children.append(child) + self._child_map[child.uid] = child + self.update() + + def remove_child(self, child: Union[AbstractTreeItem, str]): + # Allow children to be removed by UID + if isinstance(child, str): + child = self._child_map[child] + + if child not in self._children: + raise ValueError("Child does not exist for this parent") + # child.parent = None + del self._child_map[child.uid] + self._children.remove(child) + self.update() + + def indexof(self, child) -> Union[int, None]: + """Return the index of a child contained in this object""" + try: + return self._children.index(child) + except ValueError: + print("Invalid child passed to indexof") + return None + + def row(self) -> Union[int, None]: + """Return the row index of this TreeItem relative to its parent""" + if self._parent: + return self._parent.indexof(self) + return 0 + + def child_count(self): + """Return number of children belonging to this object""" + return len(self._children) + + def column_count(self): + """Default column count is 1, and the current models expect a single + column Tree structure.""" + return 1 + + def flags(self) -> int: + """Returns default flags for Tree Items, override this to enable + custom behavior in the model.""" + return QtItemFlags.ItemIsSelectable | QtItemFlags.ItemIsEnabled + + def update(self, **kwargs): + """Propogate update up to the parent that decides to catch it""" + if self.parent is not None: + self.parent.update(**kwargs) + class PlotCurve: - def __init__(self, uid: str, data: Series, label: str=None, axes: int=0, color: str=None): + def __init__(self, uid: str, data: Series, label: str=None, axes: int=0, + color: str=None): self._uid = uid self._data = data self._label = label @@ -98,38 +334,81 @@ def line2d(self, value: Line2D): class FlightLine(TreeItem): + """ + Simple TreeItem to represent a Flight Line selection, storing a start + and stop index, as well as the reference to the data it relates to. + This TreeItem does not permit the addition of children. + """ def __init__(self, start, stop, sequence, file_ref, uid=None, parent=None): - if uid is None: - self._uid = gen_uuid('ln') - else: - self._uid = uid - - self.start = start - self.stop = stop + super().__init__(uid, parent) + + self._start = start + self._stop = stop self._file = file_ref # UUID of source file for this line self._sequence = sequence - self._parent = parent + self._label = None @property - def parent(self): - return self._parent - - @parent.setter - def parent(self, value): - self._parent = value + def label(self): + return self._label - def data(self, role=None): - if role == 1: # DecorationRole (Icon) - return None - return str(self) + @label.setter + def label(self, value): + self._label = value + self.update() @property - def uid(self): - return self._uid + def start(self): + return self._start + + @start.setter + def start(self, value): + self._start = value + self.update() @property - def children(self): - return [] + def stop(self): + return self._stop + + @stop.setter + def stop(self, value): + self._stop = value + self.update() + + def data(self, role): + if role == QtDataRoles.DisplayRole: + if self.label: + return "Line {lbl} {start} :: {end}".format(lbl=self.label, + start=self.start, + end=self.stop) + return str(self) + if role == QtDataRoles.ToolTipRole: + return "Line UID: " + self.uid + return super().data(role) + + def append_child(self, child: AbstractTreeItem): + """Override base to disallow adding of children.""" + raise ValueError("FlightLine does not accept children.") def __str__(self): - return 'Line({start},{stop})'.format(start=self.start, stop=self.stop) + if self.label: + name = self.label + else: + name = 'Line' + return '{name} {start:%H:%M:%S} -> {stop:%H:%M:%S}'.format( + name=name, start=self.start, stop=self.stop) + + +class DataFile(TreeItem): + def __init__(self, uid, filename, fields, dtype): + super().__init__(uid) + self.filename = filename + self.fields = fields + self.dtype = dtype + + def data(self, role: QtDataRoles): + if role == QtDataRoles.DisplayRole: + return "{dtype}: {fname}".format(dtype=self.dtype, + fname=self.filename) + super().data(role) + diff --git a/examples/example_projectmodel.py b/examples/example_projectmodel.py deleted file mode 100644 index 60eb759..0000000 --- a/examples/example_projectmodel.py +++ /dev/null @@ -1,63 +0,0 @@ -# coding: utf-8 - -import sys - -from dgp import resources_rc - -from PyQt5.uic import loadUiType -from PyQt5.QtWidgets import QDialog, QApplication -from PyQt5.QtCore import QModelIndex, Qt - -from dgp.gui.models import ProjectModel -from dgp.lib.project import AirborneProject, Flight, AT1Meter - -tree_dialog, _ = loadUiType('treeview.ui') - - -"""This module serves as an example implementation and use of a ProjectModel with a QTreeView widget.""" - - -class TreeTest(QDialog, tree_dialog): - def __init__(self, project): - super().__init__() - self.setupUi(self) - self.model = ProjectModel(project, self) - self.model.rowsAboutToBeInserted.connect(self.insert) - self.treeView.doubleClicked.connect(self.dbl_click) - self.treeView.setModel(self.model) - self.show() - - def insert(self, index, start, end): - print("About to insert rows at {}:{}".format(start, end)) - - def dbl_click(self, index: QModelIndex): - obj = self.model.data(index, Qt.UserRole) - print("Obj type: {}, obj: {}".format(type(obj), obj)) - # print(index.internalPointer().internal_pointer) - - -if __name__ == "__main__": - prj = AirborneProject('.', 'TestTree') - prj.add_flight(Flight(prj, 'Test Flight')) - - meter = AT1Meter('AT1M-6', g0=100, CrossCal=250) - - app = QApplication(sys.argv) - dialog = TreeTest(prj) - f3 = Flight(prj, "Test Flight 3") - f3.add_line(0, 250) - f3.add_line(251, 350) - # print("F3: {}".format(f3)) - f3._gpsdata_uid = 'test1235' - dialog.model.add_child(f3) - # print(meter) - dialog.model.add_child(meter) - # print(len(project)) - # for flight in project.flights: - # print(flight) - - prj.add_flight(Flight(None, 'Test Flight 2')) - dialog.model.remove_child(f3) - # dialog.model.remove_child(f3) - sys.exit(app.exec_()) - diff --git a/examples/treemodel_integration_test.py b/examples/treemodel_integration_test.py new file mode 100644 index 0000000..4629ff8 --- /dev/null +++ b/examples/treemodel_integration_test.py @@ -0,0 +1,109 @@ +# coding: utf-8 + +import sys +from pathlib import Path + +from dgp import resources_rc + +from PyQt5.uic import loadUiType +from PyQt5.QtWidgets import QDialog, QApplication +from PyQt5.QtCore import QModelIndex, Qt + +from dgp.gui.models import ProjectModel +from dgp.lib.types import TreeItem +from dgp.gui.qtenum import QtDataRoles +from dgp.lib.project import AirborneProject, Flight, AT1Meter, Container, \ + MeterConfig + +tree_dialog, _ = loadUiType('treeview_testing.ui') + + +class TreeTest(QDialog, tree_dialog): + """ + Tree GUI Members: + treeViewTop : QTreeView + treeViewBtm : QTreeView + button_add : QPushButton + button_delete : QPushButton + """ + def __init__(self, project): + super().__init__() + self.setupUi(self) + self._prj = project + self._last_added = None + + model = ProjectModel(project, self) + self.button_add.clicked.connect(self.add_flt) + self.button_delete.clicked.connect(self.rem_flt) + self.treeViewTop.doubleClicked.connect(self.dbl_click) + self.treeViewTop.setModel(model) + # self.treeViewTop.expandAll() + self.show() + + def add_flt(self): + nflt = Flight(self._prj, "Testing Dynamic {}".format( + self._prj.count_flights)) + self._prj.add_flight(nflt) + self._last_added = nflt + # self.expand() + + def rem_flt(self): + if self._last_added is not None: + print("Removing flight") + self._prj.remove_flight(self._last_added) + self._last_added = None + else: + print("No flight to remove") + + def expand(self): + self.treeViewTop.expandAll() + self.treeViewBtm.expandAll() + + def dbl_click(self, index: QModelIndex): + internal = index.internalPointer() + print("Object: ", internal) + # print(index.internalPointer().internal_pointer) + + +class SimpleItem(TreeItem): + def __init__(self, uid, parent=None): + super().__init__(str(uid), parent=parent) + + def data(self, role: QtDataRoles): + if role == QtDataRoles.DisplayRole: + return self.uid + + +if __name__ == "__main__": + prj = AirborneProject('.', 'TestTree') + prj.add_flight(Flight(prj, 'Test Flight')) + + meter = AT1Meter('AT1M-6', g0=100, CrossCal=250) + + app = QApplication(sys.argv) + dialog = TreeTest(prj) + + f3 = Flight(prj, "Test Flight 3") + # f3.add_line(0, 250) + # f3.add_line(251, 350) + prj.add_flight(f3) + f3index = dialog.treeViewTop.model().index_from_item(f3) + + print("F3 ModelIndex: ", f3index) + print("F3 MI row {} obj {}".format(f3index.row(), + f3index.internalPointer())) + # print("F3: {}".format(f3)) + # f3._gpsdata_uid = 'test1235' + # dialog.model.add_child(f3) + # print(meter) + # dialog.model.add_child(meter) + # print(len(project)) + # for flight in project.flights: + # print(flight) + + # prj.add_flight(Flight(None, 'Test Flight 2')) + # dialog.model.remove_child(f3) + # dialog.model.remove_child(f3) + + sys.exit(app.exec_()) + diff --git a/examples/treeview_testing.ui b/examples/treeview_testing.ui new file mode 100644 index 0000000..424d4b9 --- /dev/null +++ b/examples/treeview_testing.ui @@ -0,0 +1,57 @@ + + + Dialog + + + + 0 + 0 + 522 + 497 + + + + Dialog + + + + + + + + + + + + Tree Controls + + + + + + Add Flight + + + + + + + Delete Last Flight + + + + + + + PushButton + + + + + + + + + + + diff --git a/tests/test_project.py b/tests/test_project.py index 5ee26d1..a5e4fc8 100644 --- a/tests/test_project.py +++ b/tests/test_project.py @@ -71,7 +71,7 @@ def test_flight_iteration(self): line1 = test_flight.add_line(210, 350.3) lines = [line0, line1] - for line in test_flight.lines: + for line in test_flight._lines: self.assertTrue(line in lines) # TODO: Fix ImportWarning generated by pytables? diff --git a/tests/test_treemodel.py b/tests/test_treemodel.py new file mode 100644 index 0000000..d9af55e --- /dev/null +++ b/tests/test_treemodel.py @@ -0,0 +1,109 @@ +# coding: utf-8 + +# from .context import dgp + +import unittest + +from dgp.lib import types, project +from dgp.gui.qtenum import QtDataRoles +from dgp.gui import models + + +class TestModels(unittest.TestCase): + def setUp(self): + self.uid = "uid123" + self.ti = types.TreeItem(self.uid) + self.uid_ch0 = "uidchild0" + self.uid_ch1 = "uidchild1" + self.child0 = types.TreeItem(self.uid_ch0) + self.child1 = types.TreeItem(self.uid_ch1) + + def test_treeitem(self): + """Test new tree item base class""" + self.assertIsInstance(self.ti, types.AbstractTreeItem) + self.assertEqual(self.ti.uid, self.uid) + + self.assertEqual(self.ti.child_count(), 0) + self.assertEqual(self.ti.row(), 0) + + def test_tree_child(self): + uid = "uid123" + child_uid = "uid345" + ti = types.TreeItem(uid) + child = types.TreeItem(child_uid) + ti.append_child(child) + ti.append_child(child) + # Appending the same item twice should have no effect + self.assertEqual(ti.child_count(), 1) + + # self.assertEqual(ti.child(child_uid), child) + self.assertEqual(child.parent, ti) + + with self.assertRaises(AssertionError): + ti.append_child("Bad Child") + + with self.assertRaises(AssertionError): + child.parent = "Not a valid parent" + + self.assertEqual(ti.indexof(child), 0) + child1 = types.TreeItem("uid456", parent=ti) + self.assertEqual(child1.parent, ti) + self.assertEqual(child1, ti.child("uid456")) + self.assertEqual(child1.row(), 1) + + def test_tree_iter(self): + """Test iteration of objects in TreeItem""" + self.ti.append_child(self.child0) + self.ti.append_child(self.child1) + + child_list = [self.child0, self.child1] + self.assertEqual(self.ti.child_count(), 2) + for child in self.ti: + self.assertIn(child, child_list) + self.assertIsInstance(child, types.AbstractTreeItem) + + def test_tree_len(self): + """Test __len__ method of TreeItem""" + self.assertEqual(len(self.ti), 0) + self.ti.append_child(self.child0) + self.ti.append_child(self.child1) + self.assertEqual(len(self.ti), 2) + + def test_tree_getitem(self): + self.ti.append_child(self.child0) + self.ti.append_child(self.child1) + + self.assertEqual(self.ti[0], self.child0) + self.assertEqual(self.ti[1], self.child1) + with self.assertRaises(ValueError): + invl_key = self.ti[('a tuple',)] + + with self.assertRaises(IndexError): + invl_idx = self.ti[5] + + self.assertEqual(self.ti[self.uid_ch0], self.child0) + + with self.assertRaises(KeyError): + invl_uid = self.ti["notarealuid"] + + def test_remove_child(self): + self.ti.append_child(self.child0) + self.assertEqual(len(self.ti), 1) + + self.ti.remove_child(self.child0) + self.assertEqual(len(self.ti), 0) + with self.assertRaises(KeyError): + ch0 = self.ti[self.uid_ch0] + + self.ti.append_child(self.child0) + self.ti.append_child(self.child1) + self.assertEqual(len(self.ti), 2) + self.ti.remove_child(self.uid_ch0) + self.assertEqual(len(self.ti), 1) + + def test_tree_contains(self): + """Test tree handling of 'x in tree' expressions.""" + self.ti.append_child(self.child1) + self.assertTrue(self.child1 in self.ti) + self.assertTrue(self.child0 not in self.ti) + From eadd28c029306556d01d07a834ab0dab2dc53571 Mon Sep 17 00:00:00 2001 From: Zac Brady Date: Fri, 1 Dec 2017 08:15:16 -0700 Subject: [PATCH 029/236] Feature/#50 tabs (#51) Resolves #50 * ENH: Added tab functionality for Flights. New tab functionality: Double click flight or create new flight to display in its own tab. Tabs have sub-tabs for future use displaying maps, transformations etc. TODO: Implement close button on tabs, decide whether to destroy tab, or hide to show again later. * ENH: Rework channel std model into custom model. Design new model based on QAbstractModel for Channel data selection feature. New model enables customization of drag and drop, and simplifies plotting updates. Modified types.py and created new BaseTreeItem class that provides implementation of AbstractTreeItem, without adding any additional features like TreeItem. This allows the developer to create specialized Tree Item classes with a default implementation for the basic requirements, without including unnecesary features. * ENH/TST: Added datamanager module as global data interface. Add datamanager module, to act as a global interface to import/export/load/save data within the project. The datamanager is initialized once and then can be used by any other module in the project by calling datamanager.get_manager(). This simplifies the retrieval of data from various locations in the code, as each caller must only know the UID and type of data they need to retrieve, as opposed to storing references to the project to utilize its load method. TST: Basic test suite created for datamanager - more comprehensive tests need to be added as functionality is added to the module - plan to support the storing of metadata and other formats such as JSON, CSV. * ENH: Various enhancements to Tab UI model. A sprawling commit that lays the foundation for the UI as we proceed. UI Tabs are now mostly functional, each Flight is displayed in its own tab, and the contextual tree model (below the project tree) is automatically switched/updated as the user selects between tabs and sub-tabs. This commit and the preceeding commit also introduce the datamanager module, which was necessary at this point to reduce the complexity of calls between the Flights/Tabs and Project. Code in various files has been updated to utilize the new datamanager for the import/retrieval of DataFrames. * FIX: Fix handling of relative/absolute paths. Fix erroneous behavior of datamanager if project directory is moved. Data manager now constructs paths to data files based on its initialization path. * CLN/ENH: Code-cleanup and reintroduced state into Flight Tabs. General code cleanup Re-implemented state save/load into Flight tab code, so that the plot tab will remember and re-draw plot/lines when opened. * ENH/CLN: Improved datamanager and JSON registry. Improvements and tests added for basic functionality of DataManager and JSON registry component - ability to store/retrieve HDF5 files from module level instance. Added ability to close tabs in tab interface. Cleaned up and documented code in various files. TODO - should tab widgets be kept in memory for quicker redraw if reopened? --- dgp/gui/dialogs.py | 116 ++++---- dgp/gui/loader.py | 43 +-- dgp/gui/main.py | 575 ++++++++++++-------------------------- dgp/gui/models.py | 393 ++++++++++++++++++-------- dgp/gui/splash.py | 60 ++-- dgp/gui/ui/main_window.ui | 42 +-- dgp/gui/utils.py | 39 ++- dgp/gui/widgets.py | 228 +++++++++++++++ dgp/lib/datamanager.py | 269 ++++++++++++++++++ dgp/lib/plotter.py | 84 +++--- dgp/lib/project.py | 299 +++----------------- dgp/lib/types.py | 294 ++++++++++--------- tests/test_datamanager.py | 55 ++++ tests/test_project.py | 51 +--- tests/test_treemodel.py | 1 + 15 files changed, 1427 insertions(+), 1122 deletions(-) create mode 100644 dgp/gui/widgets.py create mode 100644 dgp/lib/datamanager.py create mode 100644 tests/test_datamanager.py diff --git a/dgp/gui/dialogs.py b/dgp/gui/dialogs.py index 143c222..5ed9f42 100644 --- a/dgp/gui/dialogs.py +++ b/dgp/gui/dialogs.py @@ -2,12 +2,13 @@ import os import logging -import functools import datetime import pathlib -from typing import Dict, Union, List +from typing import Union, List -from PyQt5 import Qt, QtWidgets, QtCore +from PyQt5 import Qt +import PyQt5.QtWidgets as QtWidgets +import PyQt5.QtCore as QtCore from PyQt5.uic import loadUiType import dgp.lib.project as prj @@ -28,7 +29,8 @@ class BaseDialog(QtWidgets.QDialog): def __init__(self): self.log = logging.getLogger(__name__) error_handler = ConsoleHandler(self.write_error) - error_handler.setFormatter(logging.Formatter('%(levelname)s: %(message)s')) + error_handler.setFormatter(logging.Formatter('%(levelname)s: ' + '%(message)s')) error_handler.setLevel(logging.DEBUG) self.log.addHandler(error_handler) pass @@ -38,22 +40,17 @@ class ImportData(QtWidgets.QDialog, data_dialog): """ Rationalization: This dialog will be used to import gravity and/or GPS data. - A drop down box will be populated with the available project flights into which the data will be associated - User will specify wheter the data is a gravity or gps file (TODO: maybe we can programatically determine the type) + A drop down box will be populated with the available project flights into + which the data will be associated + User will specify wheter the data is a gravity or gps file (TODO: maybe we + can programatically determine the type) User will specify file path - Maybe we can dynamically load the first 5 or so lines of data and display column headings, which would allow user - to change the headers if necesarry - This class does not handle the actual loading of data, it only sets up the parameters (path, type etc) for the - calling class to do the loading. + This class does not handle the actual loading of data, it only sets up the + parameters (path, type etc) for the calling class to do the loading. """ - def __init__(self, project: prj.AirborneProject=None, flight: prj.Flight=None, *args): - """ - - :param project: - :param flight: Currently selected flight to auto-select in list box - :param args: - """ + def __init__(self, project: prj.AirborneProject=None, flight: + prj.Flight=None, *args): super().__init__(*args) self.setupUi(self) @@ -69,10 +66,10 @@ def __init__(self, project: prj.AirborneProject=None, flight: prj.Flight=None, * self.flight = flight for flight in project.flights: - # TODO: Change dict index to human readable value self.combo_flights.addItem(flight.name, flight.uid) - if flight == self.flight: # scroll to this item if it matches self.flight - self.combo_flights.setCurrentIndex(self.combo_flights.count() - 1) + # scroll to this item if it matches self.flight + if flight == self.flight: + self.combo_flights.setCurrentIndex(self.combo_flights.count()-1) for meter in project.meters: self.combo_meters.addItem(meter.name) @@ -101,18 +98,20 @@ def select_tree_file(self, index): return def browse_file(self): - path, _ = QtWidgets.QFileDialog.getOpenFileName(self, "Select Data File", os.getcwd(), "Data (*.dat *.csv)") + path, _ = QtWidgets.QFileDialog.getOpenFileName( + self, "Select Data File", os.getcwd(), "Data (*.dat *.csv)") if path: self.path = pathlib.Path(path) self.field_path.setText(self.path.name) index = self.file_model.index(str(self.path.resolve())) - self.tree_directory.scrollTo(self.file_model.index(str(self.path.resolve()))) + self.tree_directory.scrollTo(self.file_model.index( + str(self.path.resolve()))) self.tree_directory.setCurrentIndex(index) def accept(self): # '&' is used to set text hints in the GUI - self.dtype = {'G&PS Data': 'gps', '&Gravity Data': 'gravity'}.get(self.group_radiotype.checkedButton().text(), - 'gravity') + self.dtype = {'G&PS Data': 'gps', '&Gravity Data': 'gravity'}.get( + self.group_radiotype.checkedButton().text(), 'gravity') self.flight = self.combo_flights.currentData() if self.path is None: return @@ -145,15 +144,15 @@ def __init__(self, project, flight, parent=None): for flt in project.flights: self.combo_flights.addItem(flt.name, flt) - if flt == self._flight: # scroll to this item if it matches self.flight - self.combo_flights.setCurrentIndex(self.combo_flights.count() - 1) + # scroll to this item if it matches self.flight + if flt == self._flight: + self.combo_flights.setCurrentIndex(self.combo_flights.count()-1) # Signals/Slots self.line_path.textChanged.connect(self._preview) self.btn_browse.clicked.connect(self.browse_file) self.btn_setcols.clicked.connect(self._capture) - # This doesn't work, as the partial function is created with self._path which is None - # self.btn_reload.clicked.connect(functools.partial(self._preview, self._path)) + self.btn_reload.clicked.connect(lambda: self._preview(self._path)) @property def content(self) -> (str, str, List, prj.Flight): @@ -174,8 +173,8 @@ def _capture(self) -> Union[None, List]: return fields def _dtype(self): - return {'GPS': 'gps', 'Gravity': 'gravity'}.get(self.group_dtype.checkedButton().text().replace('&', ''), - 'gravity') + return {'GPS': 'gps', 'Gravity': 'gravity'}.get( + self.group_dtype.checkedButton().text().replace('&', ''), 'gravity') def _preview(self, path: str): if path is None: @@ -194,10 +193,11 @@ def _preview(self, path: str): dtype = self._dtype() if dtype == 'gravity': - fields = ['gravity', 'long', 'cross', 'beam', 'temp', 'status', 'pressure', - 'Etemp', 'GPSweek', 'GPSweekseconds'] + fields = ['gravity', 'long', 'cross', 'beam', 'temp', 'status', + 'pressure', 'Etemp', 'GPSweek', 'GPSweekseconds'] elif dtype == 'gps': - fields = ['mdy', 'hms', 'lat', 'long', 'ell_ht', 'ortho_ht', 'num_sats', 'pdop'] + fields = ['mdy', 'hms', 'latitude', 'longitude', 'ell_ht', + 'ortho_ht', 'num_sats', 'pdop'] else: return delegate = SelectionDelegate(fields) @@ -209,8 +209,8 @@ def _preview(self, path: str): self.table_preview.setItemDelegate(delegate) def browse_file(self): - path, _ = QtWidgets.QFileDialog.getOpenFileName(self, "Select Data File", os.getcwd(), - "Data (*.dat *.csv *.txt)") + path, _ = QtWidgets.QFileDialog.getOpenFileName( + self, "Select Data File", os.getcwd(), "Data (*.dat *.csv *.txt)") if path: self.line_path.setText(str(path)) self._path = path @@ -225,13 +225,20 @@ def __init__(self, project, *args): self._grav_path = None self._gps_path = None self.combo_meter.addItems(project.meters) - self.browse_gravity.clicked.connect(functools.partial(self.browse, field=self.path_gravity)) - self.browse_gps.clicked.connect(functools.partial(self.browse, field=self.path_gps)) + # self.browse_gravity.clicked.connect(functools.partial(self.browse, + # field=self.path_gravity)) + self.browse_gravity.clicked.connect(lambda: self.browse( + field=self.path_gravity)) + # self.browse_gps.clicked.connect(functools.partial(self.browse, + # field=self.path_gps)) + self.browse_gps.clicked.connect(lambda: self.browse( + field=self.path_gps)) self.date_flight.setDate(datetime.datetime.today()) self._uid = gen_uuid('f') self.text_uuid.setText(self._uid) - self.params_model = TableModel(['Key', 'Start Value', 'End Value'], editable=[1, 2]) + self.params_model = TableModel(['Key', 'Start Value', 'End Value'], + editable=[1, 2]) self.params_model.append('Tie Location') self.params_model.append('Tie Reading') self.flight_params.setModel(self.params_model) @@ -241,14 +248,15 @@ def accept(self): date = datetime.date(qdate.year(), qdate.month(), qdate.day()) self._grav_path = self.path_gravity.text() self._gps_path = self.path_gps.text() - self._flight = prj.Flight(self._project, self.text_name.text(), self._project.get_meter( + self._flight = prj.Flight(self._project, self.text_name.text(), + self._project.get_meter( self.combo_meter.currentText()), uuid=self._uid, date=date) - print(self.params_model.updates) + # print(self.params_model.updates) super().accept() def browse(self, field): - path, _ = QtWidgets.QFileDialog.getOpenFileName(self, "Select Data File", os.getcwd(), - "Data (*.dat *.csv *.txt)") + path, _ = QtWidgets.QFileDialog.getOpenFileName( + self, "Select Data File", os.getcwd(), "Data (*.dat *.csv *.txt)") if path: field.setText(path) @@ -274,10 +282,10 @@ def __init__(self, *args): super().__init__(*args) self.setupUi(self) - # TODO: Abstract logging setup to a base dialog class so that it can be easily implemented in all dialogs self.log = logging.getLogger(__name__) error_handler = ConsoleHandler(self.write_error) - error_handler.setFormatter(logging.Formatter('%(levelname)s: %(message)s')) + error_handler.setFormatter(logging.Formatter('%(levelname)s: ' + '%(message)s')) error_handler.setLevel(logging.DEBUG) self.log.addHandler(error_handler) @@ -288,15 +296,19 @@ def __init__(self, *args): self._project = None # Populate the type selection list - dgs_airborne = Qt.QListWidgetItem(Qt.QIcon(':images/assets/flight_icon.png'), 'DGS Airborne', self.prj_type_list) + flt_icon = Qt.QIcon(':images/assets/flight_icon.png') + boat_icon = Qt.QIcon(':images/assets/boat_icon.png') + dgs_airborne = Qt.QListWidgetItem(flt_icon, 'DGS Airborne', + self.prj_type_list) dgs_airborne.setData(QtCore.Qt.UserRole, 'dgs_airborne') self.prj_type_list.setCurrentItem(dgs_airborne) - dgs_marine = Qt.QListWidgetItem(Qt.QIcon(':images/assets/boat_icon.png'), 'DGS Marine', self.prj_type_list) + dgs_marine = Qt.QListWidgetItem(boat_icon, 'DGS Marine', + self.prj_type_list) dgs_marine.setData(QtCore.Qt.UserRole, 'dgs_marine') def write_error(self, msg, level=None) -> None: self.label_required.setText(msg) - self.label_required.setStyleSheet('color: {}'.format(LOG_COLOR_MAP[level])) + self.label_required.setStyleSheet('color: ' + LOG_COLOR_MAP[level]) def create_project(self): """ @@ -309,10 +321,12 @@ def create_project(self): invalid_input = False for attr in required_fields.keys(): if not self.__getattribute__(attr).text(): - self.__getattribute__(required_fields[attr]).setStyleSheet('color: red') + self.__getattribute__(required_fields[attr]).setStyleSheet( + 'color: red') invalid_input = True else: - self.__getattribute__(required_fields[attr]).setStyleSheet('color: black') + self.__getattribute__(required_fields[attr]).setStyleSheet( + 'color: black') if not pathlib.Path(self.prj_dir.text()).exists(): invalid_input = True @@ -340,7 +354,8 @@ def _select_desktop(self): self.prj_dir.setText(str(path)) def select_dir(self): - path = QtWidgets.QFileDialog.getExistingDirectory(self, "Select Project Parent Directory") + path = QtWidgets.QFileDialog.getExistingDirectory( + self, "Select Project Parent Directory") if path: self.prj_dir.setText(path) @@ -370,6 +385,7 @@ def accept(self): self.updates = self._model.updates super().accept() + class SetLineLabelDialog(QtWidgets.QDialog, line_label_dialog): def __init__(self, label): super().__init__() diff --git a/dgp/gui/loader.py b/dgp/gui/loader.py index 18a71e7..0d981e1 100644 --- a/dgp/gui/loader.py +++ b/dgp/gui/loader.py @@ -3,48 +3,57 @@ import pathlib from typing import List -from pandas import DataFrame from PyQt5.QtCore import pyqtSignal, QThread, pyqtBoundSignal +import dgp.lib.types as types +import dgp.lib.datamanager as dm from dgp.lib.gravity_ingestor import read_at1a from dgp.lib.trajectory_ingestor import import_trajectory class LoadFile(QThread): - """Defines a QThread object whose job is to load (potentially large) datafiles in a Thread.""" + """ + LoadFile is a threaded interface used to load and ingest a raw source + data file, i.e. gravity or trajectory data. + Upon import the data is exported to an HDF5 store for further use by the + application. + """ progress = pyqtSignal(int) # type: pyqtBoundSignal loaded = pyqtSignal() # type: pyqtBoundSignal - # data = pyqtSignal(DataPacket) # type: pyqtBoundSignal - data = pyqtSignal(DataFrame, pathlib.Path, str) + data = pyqtSignal(types.DataSource) # type: pyqtBoundSignal - def __init__(self, path: pathlib.Path, datatype: str, flight_id: str, fields: List=None, parent=None, **kwargs): + def __init__(self, path: pathlib.Path, datatype: str, fields: List=None, + parent=None, **kwargs): super().__init__(parent) - # TODO: Add type checking to path, ensure it is a pathlib.Path (not str) as the pyqtSignal expects a Path - self._path = path + self._path = pathlib.Path(path) self._dtype = datatype - self._flight = flight_id - self._functor = {'gravity': read_at1a, 'gps': import_trajectory}.get(datatype, None) + self._functor = {'gravity': read_at1a, + 'gps': import_trajectory}.get(datatype, None) self._fields = fields def run(self): + """Executed on thread.start(), performs long running data load action""" if self._dtype == 'gps': df = self._load_gps() else: df = self._load_gravity() self.progress.emit(1) - # self.data.emit(data) - self.data.emit(df, pathlib.Path(self._path), self._dtype) + # Export data to HDF5, get UID reference to pass along + uid = dm.get_manager().save_data(dm.HDF5, df) + cols = [col for col in df.keys()] + dsrc = types.DataSource(uid, self._path, cols, self._dtype) + self.data.emit(dsrc) self.loaded.emit() def _load_gps(self): if self._fields is not None: fields = self._fields else: - fields = ['mdy', 'hms', 'lat', 'long', 'ortho_ht', 'ell_ht', 'num_sats', 'pdop'] - return self._functor(self._path, columns=fields, skiprows=1, timeformat='hms') + fields = ['mdy', 'hms', 'latitude', 'longitude', 'ortho_ht', + 'ell_ht', 'num_sats', 'pdop'] + return import_trajectory(self._path, columns=fields, skiprows=1, + timeformat='hms') def _load_gravity(self): - if self._fields is None: - return self._functor(self._path) - else: - return self._functor(self._path, fields=self._fields) + """Load gravity data using AT1A format""" + return read_at1a(self._path, fields=self._fields) diff --git a/dgp/gui/main.py b/dgp/gui/main.py index fe11894..32c3ec7 100644 --- a/dgp/gui/main.py +++ b/dgp/gui/main.py @@ -4,22 +4,25 @@ import pathlib import functools import logging -from typing import Dict, Union - -from pandas import Series, DataFrame -from PyQt5 import QtCore, QtWidgets, QtGui -from PyQt5.QtWidgets import QListWidgetItem -from PyQt5.QtCore import pyqtSignal, pyqtBoundSignal, Qt -from PyQt5.QtGui import QColor, QStandardItemModel, QStandardItem, QIcon +from typing import Union + +import PyQt5.QtCore as QtCore +import PyQt5.QtGui as QtGui +from PyQt5.QtWidgets import (QMainWindow, QTabWidget, QAction, QMenu, + QProgressDialog, QFileDialog, QTreeView) +from PyQt5.QtCore import pyqtSignal, pyqtBoundSignal +from PyQt5.QtGui import QColor from PyQt5.uic import loadUiType import dgp.lib.project as prj +import dgp.lib.types as types from dgp.gui.loader import LoadFile -from dgp.lib.plotter import LineGrabPlot, LineUpdate -from dgp.lib.types import PlotCurve, AbstractTreeItem -from dgp.gui.utils import ConsoleHandler, LOG_FORMAT, LOG_LEVEL_MAP, get_project_file -from dgp.gui.dialogs import ImportData, AddFlight, CreateProject, InfoDialog, AdvancedImport +from dgp.gui.utils import (ConsoleHandler, LOG_FORMAT, LOG_LEVEL_MAP, + get_project_file) +from dgp.gui.dialogs import (AddFlight, CreateProject, InfoDialog, + AdvancedImport) from dgp.gui.models import TableModel, ProjectModel +from dgp.gui.widgets import FlightTab # Load .ui form @@ -40,21 +43,23 @@ def enclosed(self, *args, **kwargs): return enclosed -class MainWindow(QtWidgets.QMainWindow, main_window): +class MainWindow(QMainWindow, main_window): """An instance of the Main Program Window""" # Define signals to allow updating of loading progress status = pyqtSignal(str) # type: pyqtBoundSignal progress = pyqtSignal(int) # type: pyqtBoundSignal - def __init__(self, project: Union[prj.GravityProject, prj.AirborneProject]=None, *args): + def __init__(self, project: Union[prj.GravityProject, + prj.AirborneProject]=None, *args): super().__init__(*args) - self.setupUi(self) # Set up ui within this class - which is base_class defined by .ui file + self.setupUi(self) self.title = 'Dynamic Gravity Processor' - # Setup logging - self.log = logging.getLogger() # Attach to the root logger to capture all events + # Attach to the root logger to capture all child events + self.log = logging.getLogger() + # Setup logging handler to log to GUI panel console_handler = ConsoleHandler(self.write_console) console_handler.setFormatter(LOG_FORMAT) self.log.addHandler(console_handler) @@ -62,19 +67,15 @@ def __init__(self, project: Union[prj.GravityProject, prj.AirborneProject]=None, # Setup Project self.project = project - # Experimental: use the _model to affect changes to the project. - # self._model = ProjectModel(project) - # See http://doc.qt.io/qt-5/stylesheet-examples.html#customizing-qtreeview - # Set Stylesheet customizations for GUI Window + # Set Stylesheet customizations for GUI Window, see: + # http://doc.qt.io/qt-5/stylesheet-examples.html#customizing-qtreeview self.setStyleSheet(""" QTreeView::item { - } QTreeView::branch { /*background: palette(base);*/ } - QTreeView::branch:closed:has-children { background: none; image: url(:/images/assets/branch-closed.png); @@ -85,43 +86,51 @@ def __init__(self, project: Union[prj.GravityProject, prj.AirborneProject]=None, } """) - # Initialize plotter canvas - self.gravity_stack = QtWidgets.QStackedWidget() - self.gravity_plot_layout.addWidget(self.gravity_stack) - self.gps_stack = QtWidgets.QStackedWidget() - self.gps_plot_layout.addWidget(self.gps_stack) - # Initialize Variables # self.import_base_path = pathlib.Path('../tests').resolve() self.import_base_path = pathlib.Path('~').expanduser().joinpath( 'Desktop') - self.current_flight = None # type: prj.Flight - self.current_flight_index = QtCore.QModelIndex() # type: QtCore.QModelIndex - self.tree_index = None # type: QtCore.QModelIndex - self.flight_plots = {} # Stores plotter objects for flights - # Store StandardItemModels for Flight channel selection - self._flight_channel_models = {} + # Issue #50 Flight Tabs + self._tabs = self.tab_workspace # type: QTabWidget + self._open_tabs = {} # Track opened tabs by {uid: tab_widget, ...} + self._context_tree = self.contextual_tree # type: QTreeView + self._context_tree.setRootIsDecorated(False) + self._context_tree.setIndentation(20) + self._context_tree.setItemsExpandable(False) + # Initialize Project Tree Display self.project_tree = ProjectTreeView(parent=self, project=self.project) - self.project_tree.setMinimumWidth(300) + self.project_tree.setMinimumWidth(250) self.project_dock_grid.addWidget(self.project_tree, 0, 0, 1, 2) - # Issue #36 Channel Selection Model - self.std_model = None # type: QStandardItemModel + @property + def current_flight(self) -> Union[prj.Flight, None]: + """Returns the active flight based on which Flight Tab is in focus.""" + if self._tabs.count() > 0: + return self._tabs.currentWidget().flight + return None + + @property + def current_tab(self) -> Union[FlightTab, None]: + """Get the active FlightTab (returns None if no Tabs are open)""" + if self._tabs.count() > 0: + return self._tabs.currentWidget() + return None def load(self): - self._init_plots() + """Called from splash screen to initialize and load main window. + This may be safely deprecated as we currently do not perform any long + running operations on initial load as we once did.""" self._init_slots() - # self.update_project(signal_flight=True) - # self.project_tree.refresh() self.setWindowState(QtCore.Qt.WindowMaximized) self.save_project() self.show() try: self.progress.disconnect() self.status.disconnect() - except TypeError: # This will happen if there are no slots connected + except TypeError: + # This can be safely ignored (no slots were connected) pass def _init_slots(self): @@ -138,9 +147,6 @@ def _init_slots(self): self.action_add_flight.triggered.connect(self.add_flight_dialog) # Project Tree View Actions # - # self.prj_tree.doubleClicked.connect(self.log_tree) - # self.project_tree.clicked.connect(self._on_flight_changed) - self.project_tree.doubleClicked.connect(self._on_flight_changed) self.project_tree.doubleClicked.connect(self._launch_tab) # Project Control Buttons # @@ -151,326 +157,116 @@ def _init_slots(self): self.tab_workspace.currentChanged.connect(self._tab_changed) self.tab_workspace.tabCloseRequested.connect(self._tab_closed) - # Channel Panel Buttons # - # self.selectAllChannels.clicked.connect(self.set_channel_state) - - # self.gravity_channels.itemChanged.connect(self.channel_changed) - # self.resample_value.valueChanged[int].connect(self.resample_rate_changed) - # Console Window Actions # - self.combo_console_verbosity.currentIndexChanged[str].connect(self.set_logging_level) + self.combo_console_verbosity.currentIndexChanged[str].connect( + self.set_logging_level) - def _init_plots(self) -> None: - # TODO: The logic here and in add_flight_dialog needs to be consolidated into single function - # TODO: If a flight has saved data channel selection plot those instead of the default - """ - Initialize plots for flight objects in project. - This allows us to switch between individual plots without re-plotting giving a vast - performance increase. - Returns - ------- - None - """ - self.progress.emit(0) - for i, flight in enumerate(self.project.flights): # type: int, prj.Flight - if flight.uid in self.flight_plots: - continue - - plot, widget = self._new_plot_widget(flight, rows=3) - - self.flight_plots[flight.uid] = plot, widget - self.gravity_stack.addWidget(widget) - self.update_plot(plot, flight) - - # Don't connect this until after self.plot_flight_main or it will - # trigger on initial draw - plot.line_changed.connect(self._on_modified_line) - self.log.debug("Initialized Flight Plot: {}".format(plot)) - self.status.emit('Flight Plot {} Initialized'.format(flight.name)) - self.progress.emit(i+1) - - def _on_modified_line(self, info): - for flight in self.project.flights: - if info.flight_id == flight.uid: - - if info.uid in [x.uid for x in flight.lines]: - if info.action == 'modify': - line = flight.lines[info.uid] - line.start = info.start - line.stop = info.stop - line.label = info.label - self.log.debug("Modified line: start={start}, " - "stop={stop}, label={label}" - .format(start=info.start, - stop=info.stop, - label=info.label)) - elif info.action == 'remove': - flight.remove_line(info.uid) - self.log.debug("Removed line: start={start}, " - "stop={stop}, label={label}" - .format(start=info.start, - stop=info.stop, - label=info.label)) - else: - flight.add_line(info.start, info.stop, uid=info.uid) - self.log.debug("Added line to flight {flt}: start={start}, stop={stop}, " - "label={label}" - .format(flt=flight.name, - start=info.start, - stop=info.stop, - label=info.label)) - - @staticmethod - def _new_plot_widget(flight, rows=3): - """Generate a new LineGrabPlot and Containing Widget for display in Qt""" - plot = LineGrabPlot(flight, n=rows, fid=flight.uid, title=flight.name) - plot_toolbar = plot.get_toolbar() - - layout = QtWidgets.QVBoxLayout() - layout.addWidget(plot) - layout.addWidget(plot_toolbar) - - widget = QtWidgets.QWidget() - widget.setLayout(layout) - - return plot, widget - - def populate_channel_tree(self, flight: prj.Flight=None): - self.log.debug("Populating channel tree") - if flight is None: - flight = self.current_flight - - if flight.uid in self._flight_channel_models: - self.tree_channels.setModel(self._flight_channel_models[flight.uid]) - self.tree_channels.expandAll() - return - else: - # Generate new StdModel - model = QStandardItemModel() - model.itemChanged.connect(self._update_channel_tree) - - header_flags = Qt.ItemIsSelectable | Qt.ItemIsEnabled | Qt.ItemIsDropEnabled - headers = {} # ax_index: header - for ax in range(len(self.flight_plots[flight.uid][0])): - plot_header = QStandardItem("Plot {idx}".format(idx=ax)) - plot_header.setData(ax, Qt.UserRole) - plot_header.setFlags(header_flags) - plot_header.setBackground(QColor("LightBlue")) - headers[ax] = plot_header - model.appendRow(plot_header) - - channels_header = QStandardItem("Available Channels::") - channels_header.setBackground(QColor("Orange")) - channels_header.setFlags(Qt.NoItemFlags) - model.appendRow(channels_header) - - items = {} # uid: item - item_flags = Qt.ItemIsEnabled | Qt.ItemIsSelectable | Qt.ItemIsDragEnabled - for uid, label in flight.channels.items(): - item = QStandardItem(label) - item.setData(uid, role=Qt.UserRole) - item.setFlags(item_flags) - items[uid] = item - - state = flight.get_plot_state() # returns: {uid: (label, axes), ...} - for uid in state: - label, axes = state[uid] - headers[axes].appendRow(items[uid]) - - for uid in items: - if uid not in state: - model.appendRow(items[uid]) - - self._flight_channel_models[flight.uid] = model - self.tree_channels.setModel(model) - self.tree_channels.expandAll() - - def _update_channel_tree(self, item): - self.log.debug("Updating model: {}".format(item.text())) - parent = item.parent() - plot, _ = self.flight_plots[self.current_flight.uid] # type: LineGrabPlot - uid = item.data(Qt.UserRole) - if parent is not None: - # TODO: Logic here to remove from previous sub-plots (i.e. dragged from plot 0 to plot 1) - plot.remove_series(uid) - label = item.text() - plot_ax = parent.data(Qt.UserRole) - self.log.debug("Item new parent: {}".format(item.parent().text())) - self.log.debug("Adding plot on axes: {}".format(plot_ax)) - data = self.current_flight.get_channel_data(uid) - curve = PlotCurve(uid, data, label, plot_ax) - plot.add_series(curve, propogate=True) - - else: - self.log.debug("Item has no parent (remove from plot)") - plot.remove_series(uid) - - # Experimental Context Menu - def create_actions(self): - info_action = QtWidgets.QAction('&Info') - info_action.triggered.connect(self.flight_info) - return [info_action] - - def flight_info(self): - self.log.info("Printing info about the selected flight: {}".format(self.current_flight)) + def closeEvent(self, *args, **kwargs): + self.log.info("Saving project and closing.") + self.save_project() + super().closeEvent(*args, **kwargs) def set_logging_level(self, name: str): - """PyQt Slot: Changes logging level to passed string logging level name.""" + """PyQt Slot: Changes logging level to passed logging level name.""" self.log.debug("Changing logging level to: {}".format(name)) level = LOG_LEVEL_MAP[name.lower()] self.log.setLevel(level) def write_console(self, text, level): """PyQt Slot: Logs a message to the GUI console""" - log_color = {'DEBUG': QColor('DarkBlue'), 'INFO': QColor('Green'), 'WARNING': QColor('Red'), - 'ERROR': QColor('Pink'), 'CRITICAL': QColor( - 'Orange')}.get(level.upper(), QColor('Black')) + log_color = {'DEBUG': QColor('DarkBlue'), 'INFO': QColor('Green'), + 'WARNING': QColor('Red'), 'ERROR': QColor('Pink'), + 'CRITICAL': QColor('Orange')}.get(level.upper(), + QColor('Black')) self.text_console.setTextColor(log_color) self.text_console.append(str(text)) - self.text_console.verticalScrollBar().setValue(self.text_console.verticalScrollBar().maximum()) - - ##### - # Plot functions - ##### + self.text_console.verticalScrollBar().setValue( + self.text_console.verticalScrollBar().maximum()) - def _on_flight_changed(self, index: QtCore.QModelIndex) -> None: + def _launch_tab(self, index: QtCore.QModelIndex=None, flight=None) -> None: """ - PyQt Slot called upon change in flight selection using the Project Tree View. - When a new flight is selected we want to plot the gravity channel in subplot 0, with cross and long in subplot 1 - GPS data will be plotted in the GPS tab on its own plot. - - Logic: - If item @ index is not a Flight object Then return - If current_flight == item.data() @ index, Then return - - + PyQtSlot: Called to launch a flight from the Project Tree View. + This function can also be called independent of the Model if a flight is + specified, for e.g. when creating a new Flight object. Parameters ---------- - index : QtCore.QModelIndex - Model index referencing the newly selected TreeView Item + index : QModelIndex + Model index pointing to a prj.Flight object to launch the tab for + flight : prj.Flight + Optional - required if this function is called without an index Returns ------- None - """ - self.tree_index = index - qitem = index.internalPointer() - if qitem is None: - return - - if not isinstance(qitem, prj.Flight): - # TODO: Move this into a separate slot to handle double click expand - self.project_tree.setExpanded(index, - (not self.project_tree.isExpanded( - index))) - return None - else: - flight = qitem # type: prj.Flight - - if self.current_flight == flight: - # Return as this is the same flight as previously selected - return None - else: - self.current_flight = flight - - # Write flight information to TextEdit box in GUI - self.text_info.clear() - self.text_info.appendPlainText(str(flight)) - - self.populate_channel_tree(flight) - - # Check if there is a plot for this flight already - if self.flight_plots.get(flight.uid, None) is not None: - grav_plot, stack_widget = self.flight_plots[flight.uid] # type: LineGrabPlot - self.log.info("Switching widget stack") - self.gravity_stack.setCurrentWidget(stack_widget) - else: - self.log.error("No plot for this flight found.") - return - - # self.populate_channels(flight) - - if not grav_plot.plotted: - self.update_plot(grav_plot, flight) - return - - def _launch_tab(self, index: QtCore.QModelIndex): - """ - TODO: This function will be responsible for launching a new flight tab. - """ - item = index.internalPointer() - if isinstance(item, prj.Flight): - self.log.info("Launching tab for object: {}".format( - index.internalPointer().uid)) + if flight is None: + item = index.internalPointer() + if not isinstance(item, prj.Flight): + self.project_tree.toggle_expand(index) + return + flight = item # type: prj.Flight + if flight.uid in self._open_tabs: + self._tabs.setCurrentWidget(self._open_tabs[flight.uid]) + self.project_tree.toggle_expand(index) + return + + self.log.info("Launching tab for flight: UID<{}>".format(flight.uid)) + new_tab = FlightTab(flight) + new_tab.contextChanged.connect(self._update_context_tree) + self._open_tabs[flight.uid] = new_tab + t_idx = self._tabs.addTab(new_tab, flight.name) + self._tabs.setCurrentIndex(t_idx) def _tab_closed(self, index: int): # TODO: This will handle close requests for a tab - pass + self.log.warning("Tab close requested for tab: {}".format(index)) + flight_id = self._tabs.widget(index).flight.uid + self._tabs.removeTab(index) + del self._open_tabs[flight_id] def _tab_changed(self, index: int): - pass - - # TODO: is this necessary - def redraw(self, flt_id: str) -> None: - """ - Redraw the main flight plot (gravity, cross/long, eotvos) for the specific flight. + self.log.info("Tab changed to index: {}".format(index)) + if index == -1: # If no tabs are displayed + self._context_tree.setModel(None) + return + tab = self._tabs.widget(index) # type: FlightTab + self._context_tree.setModel(tab.context_model) + self._context_tree.expandAll() - Parameters - ---------- - flt_id : str - Flight uuid of flight to replot. + def _update_context_tree(self, model): + self.log.debug("Tab subcontext changed. Changing Tree Model") + self._context_tree.setModel(model) + self._context_tree.expandAll() - Returns - ------- - None - """ - self.log.warning("Redrawing plot") - plot, _ = self.flight_plots[flt_id] - flt = self.project.get_flight(flt_id) # type: prj.Flight - self.update_plot(plot, flt) - # self.populate_channel_tree(flt) - - @staticmethod - def update_plot(plot: LineGrabPlot, flight: prj.Flight) -> None: + def data_added(self, flight: prj.Flight, src: types.DataSource) -> None: """ - Plot a flight on the main plot area as a time series, displaying gravity, long/cross and eotvos - By default, expects a plot with 3 subplots accesible via getattr notation. - Gravity channel will be plotted on subplot 0 - Long and Cross channels will be plotted on subplot 1 - Eotvos Correction channel will be plotted on subplot 2 - After plotting, call the plot.draw() to set plot.plotted to true, and draw the figure. + Register a new data file with a flight and updates the Flight UI + components if the flight is open in a tab. Parameters ---------- - plot : LineGrabPlot - LineGrabPlot object used to draw the plot on flight : prj.Flight Flight object with related Gravity and GPS properties to plot + src : types.DataSource + DataSource object containing pointer and metadata to a DataFrame Returns ------- None """ - plot.clear() - queue_draw = False - - state = flight.get_plot_state() - for channel in state: - label, axes = state[channel] - curve = PlotCurve(channel, flight.get_channel_data(channel), label, axes) - plot.add_series(curve, propogate=False) - - for line in flight._lines: - plot.draw_patch(line.start, line.stop, line.uid) - queue_draw = True - if queue_draw: - plot.draw() + flight.register_data(src) + if flight.uid not in self._open_tabs: + # If flight is not opened we don't need to update the plot + return + else: + tab = self._open_tabs[flight.uid] # type: FlightTab + tab.new_data(src) # tell the tab that new data is available + return def progress_dialog(self, title, start=0, stop=1): - """Generate a progress bar dialog to show progress on long running operation.""" - dialog = QtWidgets.QProgressDialog(title, "Cancel", start, stop, self) + """Generate a progress bar to show progress on long running event.""" + dialog = QProgressDialog(title, "Cancel", start, stop, self) dialog.setWindowTitle("Loading...") dialog.setModal(True) dialog.setMinimumDuration(0) @@ -478,27 +274,39 @@ def progress_dialog(self, title, start=0, stop=1): dialog.setValue(0) return dialog - def import_data(self, path: pathlib.Path, dtype: str, flight: prj.Flight, fields=None): - self.log.info("Importing <{dtype}> from: Path({path}) into ".format(dtype=dtype, path=str(path), - name=flight.name)) - if path is None: - return False - loader = LoadFile(path, dtype, flight.uid, fields=fields, parent=self) - - # Curry functions to execute on thread completion. - add_data = functools.partial(self.project.add_data, flight_uid=flight.uid) - # tree_refresh = functools.partial(self.project_tree.refresh, curr_flightid=flight.uid) - redraw_flt = functools.partial(self.redraw, flight.uid) - prog = self.progress_dialog("Loading", 0, 0) - - loader.data.connect(add_data) - loader.progress.connect(prog.setValue) - # loader.loaded.connect(tree_refresh) - loader.loaded.connect(redraw_flt) + def import_data(self, path: pathlib.Path, dtype: str, flight: prj.Flight, + fields=None): + """ + Load data of dtype from path, using a threaded loader class + Upon load the data file should be registered with the specified flight. + """ + assert path is not None + self.log.info("Importing <{dtype}> from: Path({path}) into" + " ".format(dtype=dtype, path=str(path), + name=flight.name)) + + loader = LoadFile(path, dtype, fields=fields, parent=self) + + progress = self.progress_dialog("Loading", 0, 0) + + loader.data.connect(lambda ds: self.data_added(flight, ds)) + loader.progress.connect(progress.setValue) loader.loaded.connect(self.save_project) - loader.loaded.connect(prog.close) + loader.loaded.connect(progress.close) + loader.start() + def save_project(self) -> None: + if self.project is None: + return + if self.project.save(): + self.setWindowTitle(self.title + ' - {} [*]' + .format(self.project.name)) + self.setWindowModified(False) + self.log.info("Project saved.") + else: + self.log.info("Error saving project.") + ##### # Project dialog functions ##### @@ -509,27 +317,10 @@ def import_data_dialog(self) -> None: dialog = AdvancedImport(self.project, self.current_flight) if dialog.exec_(): path, dtype, fields, flight = dialog.content - # print("path: {} type: {}\nfields: {}\nflight: {}".format(path, dtype, fields, flight)) - # Delete flight model to force update - try: - del self._flight_channel_models[flight.uid] - except KeyError: - pass self.import_data(path, dtype, flight, fields=fields) - return - return - # Old dialog: - dialog = ImportData(self.project, self.current_flight) - if dialog.exec_(): - path, dtype, flt_id = dialog.content - flight = self.project.get_flight(flt_id) - # plot, _ = self.flight_plots[flt_id] - # plot.plotted = False - self.log.info("Importing {} file from {} into flight: {}".format(dtype, path, flight.uid)) - self.import_data(path, dtype, flight) - - def new_project_dialog(self) -> QtWidgets.QMainWindow: + + def new_project_dialog(self) -> QMainWindow: new_window = True dialog = CreateProject() if dialog.exec_(): @@ -543,16 +334,18 @@ def new_project_dialog(self) -> QtWidgets.QMainWindow: self.project.save() self.update_project() - # TODO: This will eventually require a dialog to allow selection of project type, or - # a metadata file in the project directory specifying type info + # TODO: This will eventually require a dialog to allow selection of project + # type, or a metadata file in the project directory specifying type info def open_project_dialog(self) -> None: - path = QtWidgets.QFileDialog.getExistingDirectory(self, "Open Project Directory", os.path.abspath('..')) + path = QFileDialog.getExistingDirectory(self, "Open Project Directory", + os.path.abspath('..')) if not path: return prj_file = get_project_file(path) if prj_file is None: - self.log.warning("No project file's found in directory: {}".format(path)) + self.log.warning("No project file's found in directory: {}" + .format(path)) return self.save_project() self.project = prj.AirborneProject.load(prj_file) @@ -563,33 +356,22 @@ def open_project_dialog(self) -> None: def add_flight_dialog(self) -> None: dialog = AddFlight(self.project) if dialog.exec_(): - self.log.info("Adding flight:") flight = dialog.flight + self.log.info("Adding flight {}".format(flight.name)) self.project.add_flight(flight) if dialog.gravity: self.import_data(dialog.gravity, 'gravity', flight) if dialog.gps: self.import_data(dialog.gps, 'gps', flight) - - plot, widget = self._new_plot_widget(flight, rows=3) - plot.line_changed.connect(self._on_modified_line) - self.gravity_stack.addWidget(widget) - self.flight_plots[flight.uid] = plot, widget + self._launch_tab(flight=flight) return - - def save_project(self) -> None: - if self.project is None: - return - if self.project.save(): - self.setWindowTitle(self.title + ' - {} [*]'.format(self.project.name)) - self.setWindowModified(False) - self.log.info("Project saved.") - else: - self.log.info("Error saving project.") + self.log.info("New flight creation aborted.") + return -class ProjectTreeView(QtWidgets.QTreeView): +# TODO: Move this into new module (e.g. gui/views.py) +class ProjectTreeView(QTreeView): def __init__(self, project=None, parent=None): super().__init__(parent=parent) @@ -606,38 +388,27 @@ def __init__(self, project=None, parent=None): self.setObjectName('project_tree') self.setContextMenuPolicy(QtCore.Qt.DefaultContextMenu) self._init_model() - print("Project model inited") def _init_model(self): """Initialize a new-style ProjectModel from models.py""" model = ProjectModel(self._project, parent=self) - # model.rowsAboutToBeInserted.connect(self.begin_insert) - # model.rowsInserted.connect(self.end_insert) self.setModel(model) self.expandAll() - def begin_insert(self, index, start, end): - print("Inserting rows: {}, {}".format(start, end)) - - def end_insert(self, index, start, end): - print("Finixhed inserting rows, running update") - # index is parent index - model = self.model() - uindex = model.index(row=start, parent=index) - self.update(uindex) - self.expandAll() + def toggle_expand(self, index): + self.setExpanded(index, (not self.isExpanded(index))) def contextMenuEvent(self, event: QtGui.QContextMenuEvent, *args, **kwargs): - context_ind = self.indexAt(event.pos()) # get the index of the item under the click event + # get the index of the item under the click event + context_ind = self.indexAt(event.pos()) context_focus = self.model().itemFromIndex(context_ind) - print(context_focus.uid) info_slot = functools.partial(self._info_action, context_focus) plot_slot = functools.partial(self._plot_action, context_focus) - menu = QtWidgets.QMenu() - info_action = QtWidgets.QAction("Info") + menu = QMenu() + info_action = QAction("Info") info_action.triggered.connect(info_slot) - plot_action = QtWidgets.QAction("Plot in new window") + plot_action = QAction("Plot in new window") plot_action.triggered.connect(plot_slot) menu.addAction(info_action) @@ -647,16 +418,12 @@ def contextMenuEvent(self, event: QtGui.QContextMenuEvent, *args, **kwargs): def _plot_action(self, item): raise NotImplementedError - print("Opening new plot for item") - pass def _info_action(self, item): - data = item.data(QtCore.Qt.UserRole) - if not (isinstance(item, prj.Flight) or isinstance(item, - prj.GravityProject)): + if not (isinstance(item, prj.Flight) + or isinstance(item, prj.GravityProject)): return model = TableModel(['Key', 'Value']) model.set_object(item) dialog = InfoDialog(model, parent=self) dialog.exec_() - print(dialog.updates) diff --git a/dgp/gui/models.py b/dgp/gui/models.py index 47b0674..a93bbe0 100644 --- a/dgp/gui/models.py +++ b/dgp/gui/models.py @@ -3,19 +3,26 @@ """ Provide definitions of the models used by the Qt Application in our model/view widgets. +Defines: +TableModel +ProjectModel +SelectionDelegate +ChannelListModel """ import logging -from typing import List, Union - -from PyQt5 import Qt, QtCore -from PyQt5.Qt import QWidget, QAbstractItemModel, QStandardItemModel -from PyQt5.QtCore import QModelIndex, QVariant -from PyQt5.QtGui import QIcon, QBrush, QColor, QStandardItem +from typing import Union, List + +import PyQt5.QtCore as QtCore +from PyQt5 import Qt +from PyQt5.Qt import QWidget +from PyQt5.QtCore import (QModelIndex, QVariant, QAbstractItemModel, + QMimeData, pyqtSignal, pyqtBoundSignal) +from PyQt5.QtGui import QIcon, QBrush, QColor from PyQt5.QtWidgets import QComboBox from dgp.gui.qtenum import QtDataRoles, QtItemFlags -from dgp.lib.types import AbstractTreeItem, TreeItem +from dgp.lib.types import AbstractTreeItem, TreeItem, TreeLabelItem, DataChannel class TableModel(QtCore.QAbstractTableModel): @@ -32,12 +39,14 @@ def __init__(self, columns, editable=None, editheader=False, parent=None): self._updates = {} def set_object(self, obj): - """Populates the model with key, value pairs from the passed objects' __dict__""" + """Populates the model with key, value pairs from the passed objects' + __dict__""" for key, value in obj.__dict__.items(): self.append(key, value) def append(self, *args): - """Add a new row of data to the table, trimming input array to length of columns.""" + """Add a new row of data to the table, trimming input array to length of + columns.""" if not isinstance(args, list): args = list(args) while len(args) < len(self._cols): @@ -95,8 +104,9 @@ def headerData(self, section, orientation, role=None): # Required implementations of super class for editable table def setData(self, index: QtCore.QModelIndex, value: QtCore.QVariant, role=None): - """Basic implementation of editable model. This doesn't propagate the changes to the underlying - object upon which the model was based though (yet)""" + """Basic implementation of editable model. This doesn't propagate the + changes to the underlying object upon which the model was based + though (yet)""" if index.isValid() and role == QtCore.Qt.ItemIsEditable: self._rows[index.row()][index.column()] = value self.dataChanged.emit(index, index) @@ -105,16 +115,96 @@ def setData(self, index: QtCore.QModelIndex, value: QtCore.QVariant, role=None): return False -class ProjectModel(QtCore.QAbstractItemModel): +class BaseTreeModel(QAbstractItemModel): + """ + Define common methods required for a Tree Model based on + QAbstractItemModel. + Subclasses must provide implementations for update() and data() + """ + def __init__(self, root_item: AbstractTreeItem, parent=None): + super().__init__(parent=parent) + self._root = root_item + + @property + def root(self): + return self._root + + def parent(self, index: QModelIndex=QModelIndex()) -> QModelIndex: + """ + Returns the parent QModelIndex of the given index. If the object + referenced by index does not have a parent (i.e. the root node) an + invalid QModelIndex() is constructed and returned. + """ + if not index.isValid(): + return QModelIndex() + + child_item = index.internalPointer() # type: AbstractTreeItem + parent_item = child_item.parent # type: AbstractTreeItem + if parent_item == self._root or parent_item is None: + return QModelIndex() + return self.createIndex(parent_item.row(), 0, parent_item) + + def update(self, *args, **kwargs): + raise NotImplementedError("Update must be implemented by subclass.") + + def data(self, index: QModelIndex, role: QtDataRoles=None): + raise NotImplementedError("data() must be implemented by subclass.") + + def flags(self, index: QModelIndex) -> QtItemFlags: + """Return the flags of an item at the specified ModelIndex""" + if not index.isValid(): + return QtItemFlags.NoItemFlags + return index.internalPointer().flags() + + @staticmethod + def itemFromIndex(index: QModelIndex) -> AbstractTreeItem: + """Returns the object referenced by index""" + return index.internalPointer() + + @staticmethod + def columnCount(parent: QModelIndex=QModelIndex(), *args, **kwargs): + return 1 + + def headerData(self, section: int, orientation, role: + QtDataRoles=QtDataRoles.DisplayRole): + """The Root item is responsible for first row header data""" + if orientation == QtCore.Qt.Horizontal and role == QtDataRoles.DisplayRole: + return self._root.data(role) + return QVariant() + + def index(self, row: int, col: int, parent: QModelIndex=QModelIndex(), + *args, **kwargs) -> QModelIndex: + """Return a QModelIndex for the item at the given row and column, + with the specified parent.""" + if not self.hasIndex(row, col, parent): + return QModelIndex() + if not parent.isValid(): + parent_item = self._root + else: + parent_item = parent.internalPointer() # type: AbstractTreeItem + + child_item = parent_item.child(row) + # VITAL to compare is not None vs if child_item: + if child_item is not None: + return self.createIndex(row, col, child_item) + else: + return QModelIndex() + + def rowCount(self, parent: QModelIndex=QModelIndex(), *args, **kwargs): + # *args and **kwargs are necessary to suppress Qt Warnings + if parent.isValid(): + return parent.internalPointer().child_count() + return self._root.child_count() + + +class ProjectModel(BaseTreeModel): """Heirarchial (Tree) Project Model with a single root node.""" def __init__(self, project: AbstractTreeItem, parent=None): self.log = logging.getLogger(__name__) - super().__init__(parent=parent) + super().__init__(TreeItem("root"), parent=parent) # assert isinstance(project, GravityProject) project.model = self - root = TreeItem("root1234") - root.append_child(project) - self._root_item = root + self.root.append_child(project) self.layoutChanged.emit() self.log.info("Project Tree Model initialized.") @@ -133,35 +223,7 @@ def update(self, action=None, obj=None, **kwargs): self.layoutChanged.emit() return - def parent(self, index: QModelIndex) -> QModelIndex: - """ - Returns the parent QModelIndex of the given index. If the object - referenced by index does not have a parent (i.e. the root node) an - invalid QModelIndex() is constructed and returned. - e.g. - - Parameters - ---------- - index: QModelIndex - index to find parent of - - Returns - ------- - QModelIndex: - Valid QModelIndex of parent if exists, else - Invalid QModelIndex() which references the root object - """ - if not index.isValid(): - return QModelIndex() - - child_item = index.internalPointer() # type: AbstractTreeItem - parent_item = child_item.parent # type: AbstractTreeItem - if parent_item == self._root_item: - return QModelIndex() - return self.createIndex(parent_item.row(), 0, parent_item) - - @staticmethod - def data(index: QModelIndex, role: QtDataRoles): + def data(self, index: QModelIndex, role: QtDataRoles=None): """ Returns data for the requested index and role. We do some processing here to encapsulate data within Qt Types where @@ -209,70 +271,10 @@ def flags(index: QModelIndex) -> QtItemFlags: # return index.internalPointer().flags() return QtCore.Qt.ItemIsSelectable | QtCore.Qt.ItemIsEnabled - def headerData(self, section: int, orientation, role: - QtDataRoles=QtDataRoles.DisplayRole): - """The Root item is responsible for first row header data""" - if orientation == QtCore.Qt.Horizontal and role == QtDataRoles.DisplayRole: - return self._root_item.data(role) - return QVariant() - - @staticmethod - def itemFromIndex(index: QModelIndex) -> AbstractTreeItem: - """Returns the object referenced by index""" - return index.internalPointer() - - # Experimental - doesn't work - def index_from_item(self, item: AbstractTreeItem): - """Iteratively walk through parents to generate an index""" - parent = item.parent # type: AbstractTreeItem - chain = [item] - while parent != self._root_item: - print("Parent: ", parent.uid) - chain.append(parent) - parent = parent.parent - print(chain) - idx = {} - for i, thing in enumerate(reversed(chain)): - if i == 0: - print("Index0: row", thing.row()) - idx[i] = self.index(thing.row(), 1, QModelIndex()) - else: - idx[i] = self.index(thing.row(), 1, idx[i-1]) - print(idx) - # print(idx[1].row()) - return idx[len(idx)-1] - - def index(self, row: int, column: int, parent: QModelIndex) -> QModelIndex: - """Return a QModelIndex for the item at the given row and column, - with the specified parent.""" - if not self.hasIndex(row, column, parent): - return QModelIndex() - if not parent.isValid(): - parent_item = self._root_item - else: - parent_item = parent.internalPointer() # type: AbstractTreeItem - - child_item = parent_item.child(row) - # VITAL to compare is not None vs if child_item: - if child_item is not None: - return self.createIndex(row, column, child_item) - else: - return QModelIndex() - - def rowCount(self, parent: QModelIndex=QModelIndex(), *args, **kwargs): - # *args and **kwargs are necessary to suppress Qt Warnings - if parent.isValid(): - return parent.internalPointer().child_count() - else: - return self._root_item.child_count() - - @staticmethod - def columnCount(parent: QModelIndex=QModelIndex(), *args, **kwargs): - return 1 - # QStyledItemDelegate class SelectionDelegate(Qt.QStyledItemDelegate): + """Used by the Advanced Import Dialog to enable column selection/setting.""" def __init__(self, choices, parent=None): super().__init__(parent=parent) self._choices = choices @@ -315,21 +317,172 @@ def updateEditorGeometry(self, editor: QWidget, option: Qt.QStyleOptionViewItem, editor.setGeometry(option.rect) -# Experimental: Issue #36 -class DataChannel(QStandardItem): - def __init__(self): - super().__init__(self) - self.setDragEnabled(True) +class ChannelListModel(BaseTreeModel): + """ + Tree type model for displaying/plotting data channels. + This model supports drag and drop internally. + """ + + plotOverflow = pyqtSignal(str) # type: pyqtBoundSignal + # signal(int: new index, int: old index, DataChannel) + # return -1 if item removed from plots to available list + channelChanged = pyqtSignal(int, int, DataChannel) # type: pyqtBoundSignal - def onclick(self): - pass + def __init__(self, channels: List[DataChannel], plots: int, parent=None): + """ + Init sets up a model with n+1 top-level headers where n = plots. + Each plot has a header that channels can then be dragged to from the + available channel list. + The available channels list (displayed below the plot headers is + constructed from the list of channels supplied. + The plot headers limit the number of items that can be children to 2, + this is so that the MatplotLib plotting canvas can display a left and + right Y axis scale for each plot. + Parameters + ---------- + channels : List[DataChannel] + plots + parent + """ + super().__init__(TreeLabelItem('Channel Selection'), parent=parent) + # It might be worthwhile to create a dedicated plot TreeItem for comp + self._plots = {} + self._child_limit = 2 + for i in range(plots): + plt_label = TreeLabelItem('Plot {}'.format(i), True, 2) + self._plots[i] = plt_label + self.root.append_child(plt_label) + self._available = TreeLabelItem('Available Channels') + self._channels = {} + # for channel in channels: + # self._available.append_child(channel) + # self._channels[channel.uid] = channel + self._build_model(channels) + self.root.append_child(self._available) + + def _build_model(self, channels: List[DataChannel]): + """Build the model representation""" + for channel in channels: # type: DataChannel + self._channels[channel.uid] = channel + if channel.plotted != -1: + self._plots[channel.plotted].append_child(channel) + else: + self._available.append_child(channel) -# Experimental: Drag-n-drop related to Issue #36 -class ChannelListModel(QStandardItemModel): - def __init__(self): - pass + def append_channel(self, channel: DataChannel): + self._available.append_child(channel) + self._channels[channel.uid] = channel + + def remove_channel(self, uid: str) -> bool: + if uid not in self._channels: + return False + cn = self._channels[uid] # type: DataChannel + cn_parent = cn.parent + cn_parent.remove_child(cn) + del self._channels[uid] + return True + + def move_channel(self, uid, index) -> bool: + """Move channel specified by uid to parent at index""" + + def update(self) -> None: + """Update the model layout.""" + self.layoutAboutToBeChanged.emit() + self.layoutChanged.emit() + + def data(self, index: QModelIndex, role: QtDataRoles=None): + item_data = index.internalPointer().data(role) + if item_data is None: + return QVariant() + return item_data - def dropMimeData(self, QMimeData, Qt_DropAction, p, p1, QModelIndex): - print("Mime data dropped") - pass + def flags(self, index: QModelIndex): + item = index.internalPointer() + if item == self.root: + return QtCore.Qt.NoItemFlags + if isinstance(item, DataChannel): + return (QtCore.Qt.ItemIsDragEnabled | QtCore.Qt.ItemIsSelectable | + QtCore.Qt.ItemIsEnabled) + return (QtCore.Qt.ItemIsSelectable | QtCore.Qt.ItemIsEnabled | + QtCore.Qt.ItemIsDropEnabled) + + def supportedDropActions(self): + return QtCore.Qt.MoveAction + + def supportedDragActions(self): + return QtCore.Qt.MoveAction + + def dropMimeData(self, data: QMimeData, action, row, col, + parent: QModelIndex) -> bool: + """ + Called when data is dropped into the model. + This model accepts only Move actions, and expects the data to be + textual, containing the UID of the DataChannel that is being dropped. + This method will also check to see that a drop will not violate the + _child_limit, as we want to limit the number of children to 2 for any + plot, allowing us to display twin y-axis scales. + """ + if action != QtCore.Qt.MoveAction: + return False + if not data.hasText(): + return False + + drop_object = self._channels.get(data.text(), None) # type: DataChannel + if drop_object is None: + return False + + if not parent.isValid(): + if row == -1: + p_item = self._available + drop_object.plotted = False + drop_object.axes = -1 + else: + p_item = self.root.child(row-1) + else: + p_item = parent.internalPointer() # type: TreeLabelItem + if p_item.child_count() >= self._child_limit: + if p_item != self._available: + self.plotOverflow.emit(p_item.uid) + return False + + # Remove the object to be dropped from its previous parent + drop_parent = drop_object.parent + drop_parent.remove_child(drop_object) + self.beginInsertRows(parent, row, row) + # For simplicity, simply append as the sub-order doesn't matter + drop_object.axes = p_item.row() + p_item.append_child(drop_object) + self.endInsertRows() + if drop_parent is self._available: + old_row = -1 + else: + old_row = drop_parent.row() + if p_item is self._available: + row = -1 + else: + row = p_item.row() + self.channelChanged.emit(row, old_row, drop_object) + self.update() + return True + + def canDropMimeData(self, data: QMimeData, action, row, col, parent: + QModelIndex) -> bool: + """ + Queried when Mime data is dragged over/into the model. Returns + True if the data can be dropped. Does not guarantee that it will be + accepted. + """ + if data.hasText(): + return True + return False + + def mimeData(self, indexes): + """Get the mime encoded data for selected index.""" + index = indexes[0] + item_uid = index.internalPointer().uid + print("UID for picked item: ", item_uid) + print("Picked item label: ", index.internalPointer().label) + data = QMimeData() + data.setText(item_uid) + return data diff --git a/dgp/gui/splash.py b/dgp/gui/splash.py index d69fb09..5c47560 100644 --- a/dgp/gui/splash.py +++ b/dgp/gui/splash.py @@ -7,7 +7,8 @@ from pathlib import Path from typing import Dict, Union -from PyQt5 import QtWidgets, QtCore +import PyQt5.QtWidgets as QtWidgets +import PyQt5.QtCore as QtCore from PyQt5.uic import loadUiType from dgp.gui.main import MainWindow @@ -30,7 +31,8 @@ def __init__(self, *args): self.setupUi(self) - self.settings_dir = Path.home().joinpath('AppData\Local\DynamicGravitySystems\DGP') + self.settings_dir = Path.home().joinpath( + 'AppData\Local\DynamicGravitySystems\DGP') self.recent_file = self.settings_dir.joinpath('recent.json') if not self.settings_dir.exists(): self.log.info("Settings Directory doesn't exist, creating.") @@ -56,9 +58,11 @@ def setup_logging(level=logging.DEBUG): return logging.getLogger(__name__) def accept(self, project=None): - """Runs some basic verification before calling super(QDialog).accept().""" + """ + Runs some basic verification before calling super(QDialog).accept(). + """ - # Case where project object is passed to accept() (when creating new project) + # Case where project object is passed to accept() if isinstance(project, prj.GravityProject): self.log.debug("Opening new project: {}".format(project.name)) elif not self.project_path: @@ -67,35 +71,43 @@ def accept(self, project=None): try: project = prj.AirborneProject.load(self.project_path) except FileNotFoundError: - self.log.error("Project could not be loaded from path: {}".format(self.project_path)) + self.log.error("Project could not be loaded from path: {}" + .format(self.project_path)) return - self.update_recent_files(self.recent_file, {project.name: project.projectdir}) - # Show a progress dialog for loading the project (as we generate plots upon load) - progress = QtWidgets.QProgressDialog("Loading Project", "Cancel", 0, len(project), self) - progress.setWindowFlags(QtCore.Qt.Dialog | QtCore.Qt.FramelessWindowHint | QtCore.Qt.CustomizeWindowHint) + self.update_recent_files(self.recent_file, + {project.name: project.projectdir}) + # Show a progress dialog for loading the project + # TODO: This may be obsolete now as plots are not generated on load + progress = QtWidgets.QProgressDialog("Loading Project", "Cancel", 0, + len(project), self) + progress.setWindowFlags(QtCore.Qt.Dialog | QtCore.Qt.FramelessWindowHint + | QtCore.Qt.CustomizeWindowHint) progress.setModal(True) progress.setMinimumDuration(0) - progress.setCancelButton(None) # Remove the cancel button. Possibly add a slot that has load() check and cancel + # Remove the cancel button. + progress.setCancelButton(None) progress.setValue(1) # Set an initial value to show the dialog main_window = MainWindow(project) main_window.status.connect(progress.setLabelText) main_window.progress.connect(progress.setValue) main_window.load() - progress.close() # This isn't necessary if the min/max is set correctly, but just in case. + progress.close() super().accept() return main_window def set_recent_list(self) -> None: recent_files = self.get_recent_files(self.recent_file) if not recent_files: - no_recents = QtWidgets.QListWidgetItem("No Recent Projects", self.list_projects) + no_recents = QtWidgets.QListWidgetItem("No Recent Projects", + self.list_projects) no_recents.setFlags(QtCore.Qt.NoItemFlags) return None for name, path in recent_files.items(): - item = QtWidgets.QListWidgetItem('{name} :: {path}'.format(name=name, path=str(path)), self.list_projects) + item = QtWidgets.QListWidgetItem('{name} :: {path}'.format( + name=name, path=str(path)), self.list_projects) item.setData(QtCore.Qt.UserRole, path) item.setToolTip(str(path.resolve())) self.list_projects.setCurrentRow(0) @@ -105,8 +117,8 @@ def set_selection(self, item: QtWidgets.QListWidgetItem, *args): """Called when a recent item is selected""" self.project_path = get_project_file(item.data(QtCore.Qt.UserRole)) if not self.project_path: - # TODO: Fix this, when user selects item multiple time the statement is re-appended - item.setText("{} - Project Moved or Deleted".format(item.data(QtCore.Qt.UserRole))) + item.setText("{} - Project Moved or Deleted" + .format(item.data(QtCore.Qt.UserRole))) self.log.debug("Project path set to {}".format(self.project_path)) @@ -116,16 +128,16 @@ def new_project(self): if dialog.exec_(): project = dialog.project # type: prj.AirborneProject project.save() - # self.update_recent_files(self.recent_file, {project.name: project.projectdir}) self.accept(project) def browse_project(self): """Allow the user to browse for a project directory and load.""" - path = QtWidgets.QFileDialog.getExistingDirectory(self, "Select Project Directory") + path = QtWidgets.QFileDialog.getExistingDirectory(self, + "Select Project Dir") if not path: return - prj_file = self.get_project_file(Path(path)) + prj_file = get_project_file(Path(path)) if not prj_file: self.log.error("No project files found") return @@ -146,19 +158,20 @@ def update_recent_files(path: Path, update: Dict[str, Path]) -> None: @staticmethod def get_recent_files(path: Path) -> Dict[str, Path]: """ - Ingests a JSON file specified by path, containing project_name: project_directory mappings and returns dict of - valid projects (conducting path checking and conversion to pathlib.Path) + Ingests a JSON file specified by path, containing project_name: + project_directory mappings and returns dict of valid projects ( + conducting path checking and conversion to pathlib.Path) Parameters ---------- path : Path - Path object referencing JSON object containing mappings of recent projects -> project directories + Path object referencing JSON object containing mappings of recent + projects -> project directories Returns ------- Dict Dictionary of (str) project_name: (pathlib.Path) project_directory mappings If the specified path cannot be found, an empty dictionary is returned - """ try: with path.open('r') as fd: @@ -176,7 +189,8 @@ def get_recent_files(path: Path) -> Dict[str, Path]: @staticmethod def set_recent_files(recent_files: Dict[str, Path], path: Path) -> None: """ - Take a dictionary of recent projects (project_name: project_dir) and write it out to a JSON formatted file + Take a dictionary of recent projects (project_name: project_dir) and + write it out to a JSON formatted file specified by path Parameters ---------- diff --git a/dgp/gui/ui/main_window.ui b/dgp/gui/ui/main_window.ui index f84ccd3..9ede521 100644 --- a/dgp/gui/ui/main_window.ui +++ b/dgp/gui/ui/main_window.ui @@ -78,38 +78,18 @@ true + + false + - 0 + -1 true - - - true - - - Gravity - - - - - - - - - - true - - - Mockup Tab - - - - - - - + + true + @@ -184,8 +164,8 @@ - 187 - 165 + 359 + 262 @@ -279,7 +259,7 @@ - + false @@ -336,7 +316,7 @@ - 524 + 644 246 diff --git a/dgp/gui/utils.py b/dgp/gui/utils.py index 31638c6..ae659b4 100644 --- a/dgp/gui/utils.py +++ b/dgp/gui/utils.py @@ -2,37 +2,48 @@ import logging from pathlib import Path -from typing import Union +from typing import Union, Callable -LOG_FORMAT = logging.Formatter(fmt="%(asctime)s:%(levelname)s - %(module)s:%(funcName)s :: %(message)s", +LOG_FORMAT = logging.Formatter(fmt="%(asctime)s:%(levelname)s - %(module)s:" + "%(funcName)s :: %(message)s", datefmt="%H:%M:%S") -LOG_COLOR_MAP = {'debug': 'blue', 'info': 'yellow', 'warning': 'brown', 'error': 'red', 'critical': 'orange'} -LOG_LEVEL_MAP = {'debug': logging.DEBUG, 'info': logging.INFO, 'warning': logging.WARNING, 'error': logging.ERROR, +LOG_COLOR_MAP = {'debug': 'blue', 'info': 'yellow', 'warning': 'brown', + 'error': 'red', 'critical': 'orange'} +LOG_LEVEL_MAP = {'debug': logging.DEBUG, 'info': logging.INFO, + 'warning': logging.WARNING, 'error': logging.ERROR, 'critical': logging.CRITICAL} + class ConsoleHandler(logging.Handler): - """Custom Logging Handler allowing the specification of a custom destination e.g. a QTextEdit area.""" - def __init__(self, destination): + """ + Custom Logging Handler allowing the specification of a custom destination + e.g. a QTextEdit area. + """ + def __init__(self, destination: Callable[[str, str], None]): """ - Initialize the Handler with a destination function to be called on emit(). - Destination should take 2 parameters, however emit will fallback to passing a single parameter on exception. - :param destination: callable function accepting 2 parameters: (log entry, log level name) + Initialize the Handler with a destination function to send logs to. + Destination should take 2 parameters, however emit will fallback to + passing a single parameter on exception. + :param destination: callable function accepting 2 parameters: + (log entry, log level name) """ super().__init__() - self.dest = destination + self._dest = destination def emit(self, record: logging.LogRecord): - """Emit the log record, first running it through any specified formatter.""" + """Emit the log record, first running it through any specified + formatter.""" entry = self.format(record) try: - self.dest(entry, record.levelname.lower()) + self._dest(entry, record.levelname.lower()) except TypeError: - self.dest(entry) + self._dest(entry) def get_project_file(path: Path) -> Union[Path, None]: """ - Attempt to retrieve a project file (*.d2p) from the given dir path, otherwise signal failure by returning False + Attempt to retrieve a project file (*.d2p) from the given dir path, + otherwise signal failure by returning False. :param path: str or pathlib.Path : Directory path to project :return: pathlib.Path : absolute path to *.d2p file if found, else False """ diff --git a/dgp/gui/widgets.py b/dgp/gui/widgets.py new file mode 100644 index 0000000..aa0846f --- /dev/null +++ b/dgp/gui/widgets.py @@ -0,0 +1,228 @@ +# coding: utf-8 + +# Class for custom Qt Widgets + +import logging + +from PyQt5.QtGui import QDropEvent, QDragEnterEvent, QDragMoveEvent +from PyQt5.QtWidgets import QWidget, QVBoxLayout, QTabWidget + +from PyQt5.QtCore import QMimeData, Qt, pyqtSignal, pyqtBoundSignal + +from dgp.lib.plotter import LineGrabPlot, LineUpdate +from dgp.lib.project import Flight +import dgp.gui.models as models +import dgp.lib.types as types +from dgp.lib.etc import gen_uuid + + +# Experimenting with drag-n-drop and custom widgets +class DropTarget(QWidget): + + def dragEnterEvent(self, event: QDragEnterEvent): + event.acceptProposedAction() + print("Drag entered") + + def dragMoveEvent(self, event: QDragMoveEvent): + event.acceptProposedAction() + + def dropEvent(self, e: QDropEvent): + print("Drop detected") + # mime = e.mimeData() # type: QMimeData + + +class WorkspaceWidget(QWidget): + """Base Workspace Tab Widget - Subclass to specialize function""" + def __init__(self, label: str, parent=None, **kwargs): + super().__init__(parent, **kwargs) + self.label = label + self._uid = gen_uuid('ww') + # self._layout = layout + self._context_model = None + # self.setLayout(self._layout) + + def data_modified(self, action: str, uid: str): + pass + + @property + def model(self): + return self._context_model + + @model.setter + def model(self, value): + assert isinstance(value, models.BaseTreeModel) + self._context_model = value + + @property + def uid(self): + return self._uid + + +class PlotTab(WorkspaceWidget): + """Sub-tab displayed within Flight tab interface. Displays canvas for + plotting data series.""" + def __init__(self, flight, label, axes: int, **kwargs): + super().__init__(label, **kwargs) + self.log = logging.getLogger('PlotTab') + + vlayout = QVBoxLayout() + self._plot = LineGrabPlot(flight, axes) + self._plot.line_changed.connect(self._on_modified_line) + self._flight = flight + + vlayout.addWidget(self._plot) + vlayout.addWidget(self._plot.get_toolbar()) + self.setLayout(vlayout) + self._apply_state() + self._init_model() + + def _apply_state(self): + """ + Apply saved state to plot based on Flight plot channels. + Returns + ------- + + """ + state = self._flight.get_plot_state() + draw = False + for dc in state: + self._plot.add_series(dc, dc.plotted) + + for line in self._flight.lines: + self._plot.draw_patch(line.start, line.stop, line.uid) + draw = True + if draw: + self._plot.draw() + + def _init_model(self): + channels = list(self._flight.channels) + plot_model = models.ChannelListModel(channels, len(self._plot)) + plot_model.plotOverflow.connect(self._too_many_children) + plot_model.channelChanged.connect(self._on_channel_changed) + plot_model.update() + self.model = plot_model + + def data_modified(self, action: str, uid: str): + self.log.info("Adding channels to model.") + channels = list(self._flight.channels) + for cn in channels: + self.model.append_channel(cn) + self.model.update() + # self._init_model() + + def _on_modified_line(self, info: LineUpdate): + flight = self._flight + if info.uid in [x.uid for x in flight.lines]: + if info.action == 'modify': + line = flight.lines[info.uid] + line.start = info.start + line.stop = info.stop + line.label = info.label + self.log.debug("Modified line: start={start}, stop={stop}," + " label={label}" + .format(start=info.start, stop=info.stop, + label=info.label)) + elif info.action == 'remove': + flight.remove_line(info.uid) + self.log.debug("Removed line: start={start}, " + "stop={stop}, label={label}" + .format(start=info.start, stop=info.stop, + label=info.label)) + else: + flight.add_line(info.start, info.stop, uid=info.uid) + self.log.debug("Added line to flight {flt}: start={start}, " + "stop={stop}, label={label}" + .format(flt=flight.name, start=info.start, + stop=info.stop, label=info.label)) + + def _on_channel_changed(self, new, old, channel: types.DataChannel): + self.log.info("Channel change request: new{} old{}".format(new, old)) + if new == -1: + self.log.debug("Removing series from plot") + self._plot.remove_series(channel) + return + if old == -1: + self.log.info("Adding series to plot") + self._plot.add_series(channel, new) + return + self.log.debug("Moving series on plot") + # self._plot.move_series(channel.uid, new) + self._plot.remove_series(channel) + self._plot.add_series(channel, new) + return + + def _too_many_children(self, uid): + self.log.warning("Too many children for plot: {}".format(uid)) + + +class TransformTab(WorkspaceWidget): + pass + + +class MapTab(WorkspaceWidget): + pass + + +class FlightTab(QWidget): + + contextChanged = pyqtSignal(models.BaseTreeModel) # type: pyqtBoundSignal + + def __init__(self, flight: Flight, parent=None, flags=0, **kwargs): + super().__init__(parent=parent, flags=Qt.Widget) + self.log = logging.getLogger(__name__) + self._flight = flight + + self._layout = QVBoxLayout(self) + self._workspace = QTabWidget() + self._workspace.setTabPosition(QTabWidget.West) + self._workspace.currentChanged.connect(self._on_changed_context) + self._layout.addWidget(self._workspace) + + # Define Sub-Tabs within Flight space e.g. Plot, Transform, Maps + self._plot_tab = PlotTab(flight, "Plot", 3) + + self._transform_tab = WorkspaceWidget("Transforms") + self._map_tab = WorkspaceWidget("Map") + + self._workspace.addTab(self._plot_tab, "Plot") + self._workspace.addTab(self._transform_tab, "Transforms") + self._workspace.addTab(self._map_tab, "Map") + + self._context_models = {} + + self._workspace.setCurrentIndex(0) + self._plot_tab.update() + + def _init_transform_tab(self): + pass + + def _init_map_tab(self): + pass + + def _on_changed_context(self, index: int): + self.log.debug("Flight {} sub-tab changed to index: {}".format( + self.flight.name, index)) + model = self._workspace.currentWidget().model + self.contextChanged.emit(model) + + def new_data(self, dsrc: types.DataSource): + for tab in [self._plot_tab, self._transform_tab, self._map_tab]: + print("Updating tabs") + tab.data_modified('add', 'test') + + @property + def flight(self): + return self._flight + + @property + def plot(self): + return self._plot + + @property + def context_model(self): + """Return the QAbstractModel type for the given context i.e. current + sub-tab of this flight. This enables different sub-tabs of a this + Flight Tab to specify a tree view model to be displayed as the tabs + are switched.""" + current_tab = self._workspace.currentWidget() # type: WorkspaceWidget + return current_tab.model diff --git a/dgp/lib/datamanager.py b/dgp/lib/datamanager.py new file mode 100644 index 0000000..41df95a --- /dev/null +++ b/dgp/lib/datamanager.py @@ -0,0 +1,269 @@ +# coding: utf-8 + +import logging +import json +from pathlib import Path +from typing import Union + +from pandas import HDFStore, DataFrame + +from dgp.lib.etc import gen_uuid + +""" +Dynamic Gravity Processor (DGP) :: lib/datamanager.py +License: Apache License V2 + +Work in Progress +Should be initialized from Project Object, to pass project base dir. + +Requirements: +1. Store a DataFrame on the file system. +2. Retrieve a DataFrame from the file system. +2a. Store/retrieve metadata on other data objects. +2b. Cache any loaded data for the current session (up to a limit? e.g. LRU) +3. Store an arbitrary dictionary. +4. Track original file location of any imported files. + +What resource silos could we have? +HDF5 +CSV/File +Serialized/Pickled objects +JSON +Backup files/archives (.zip/.tgz) + +""" + +__all__ = ['init', 'get_manager', 'HDF5', 'JSON', 'CSV'] + +REGISTRY_NAME = 'dmreg.json' + +# Define Data Types +HDF5 = 'hdf5' +JSON = 'json' +CSV = 'csv' + +_manager = None + + +class _Registry: + """ + A JSON utility class that allows us to read/write from the JSON file + with a context manager. The context manager handles automatic saving and + loading of the JSON registry file. + """ + __emtpy = { + 'version': 1, + 'datamap': {} # data_uid -> data_type + } + + def __init__(self, path: Path): + self.__base_path = Path(path) + self.__path = self.__base_path.joinpath(REGISTRY_NAME) + self.__registry = None + + def __load(self) -> None: + """Load the registry from __path, create and dump if it doesn't exist""" + try: + with self.__path.open('r') as fd: + self.__registry = json.load(fd) + except FileNotFoundError: + self.__registry = self.__emtpy.copy() + self.__save() + + def __save(self) -> None: + """Save __registry to __path as JSON""" + with self.__path.open('w') as fd: + json.dump(self.__registry, fd, indent=4) + + def get_hdfpath(self, touch=True) -> Path: + """ + Return the stored HDF5 file path, or create a new one if it + doesn't exist. + + Notes + ----- + The newly generated hdf file name will be created if touch=True, + else the file path must be written to in order to create it. + """ + if HDF5 in self.registry: + return self.__base_path.joinpath(self.registry[HDF5]) + + # Create the HDF5 path if it doesnt exist + with self as reg: + fname = gen_uuid('repo_') + '.hdf5' + reg.setdefault(HDF5, fname) + path = self.__base_path.joinpath(fname) + if touch: + path.touch() + return path + + def get_type(self, uid) -> Path: + """Return the data type of data represented by UID""" + return self.registry['datamap'][uid] + + @property + def registry(self) -> dict: + """Return internal registry, loading it from file if None""" + if self.__registry is None: + self.__load() + return self.__registry + + def __getitem__(self, item) -> dict: + return self.registry[item] + + def __enter__(self) -> dict: + """Context manager entry point, return reference to registry dict""" + return self.registry + + def __exit__(self, exc_type, exc_val, exc_tb) -> None: + """Context manager exit, save/dump any changes to registry to file""" + self.__save() + + +class _DataManager: + """ + Do not instantiate this class directly. Call the module init() method + DataManager is designed to be a singleton class that is initialized and + stored within the module level var 'manager', other modules can then + request a reference to the instance via get_manager() and use the class + to load and save data. + This is similar in concept to the Python Logging + module, where the user can call logging.getLogger() to retrieve a global + root logger object. + The DataManager will be responsible for most if not all data IO, + providing a centralized interface to store, retrieve, and export data. + To track the various data files that the DataManager manages, a JSON + registry is maintained within the project/data directory. This JSON + registry is updated and queried for relative file paths, and may also be + used to store mappings of uid -> file for individual blocks of data. + """ + _registry = None + + def __new__(cls, *args, **kwargs): + """The utility of this is questionable. Idea is to ensure this class + is a singleton""" + global _manager + if _manager is not None: + return _manager + _manager = super().__new__(cls) + return _manager + + def __init__(self, root_path): + self.log = logging.getLogger(__name__) + self.dir = Path(root_path) + if not self.dir.exists(): + self.dir.mkdir(parents=True) + + # Initialize the JSON Registry + self._registry = _Registry(self.dir) + self._cache = {} + self.init = True + self.log.debug("DataManager initialized.") + + def save_data(self, dtype, data) -> str: + """ + Save data to a repository for dtype information. + Data is added to the local cache, keyed by its generated UID. + The generated UID is passed back to the caller for later reference. + This function serves as a dispatch mechanism for different data types. + e.g. To dump a pandas DataFrame into an HDF5 store: + >>> df = DataFrame() + >>> uid = get_manager().save_data(HDF5, df) + The DataFrame can later be loaded by calling load_data, e.g. + >>> df = get_manager().load_data(uid) + + Parameters + ---------- + dtype: str + Data type, determines how/where data is saved. + Options: HDF5, JSON, CSV + data: Union[DataFrame, Series, dict, list, str] + Data object to be stored on disk via specified format. + + Returns + ------- + str: + Generated UID assigned to data object saved. + """ + if dtype == HDF5: + uid = self._save_hdf5(data) + self._cache[uid] = data + return uid + + def _save_hdf5(self, data, uid=None): + """ + Saves data to the managed HDF5 repository. + Parameters + ---------- + data: Union[DataFrame, Series] + uid: str + Optional UID to assign to the data - if None specified a new UID + will be generated. + + Returns + ------- + str: + Returns the UID of the data saved to the HDF5 repo. + """ + hdf_path = self._registry.get_hdfpath() + if uid is None: + uid = gen_uuid('data_') + with HDFStore(str(hdf_path)) as hdf, self._registry as reg: + print("Writing to hdfstore: ", hdf_path) + hdf.put(uid, data, format='fixed', data_columns=True) + reg['datamap'].update({uid: HDF5}) + return uid + + def load_data(self, uid): + """ + Load data from a managed repository by UID + This public method is a dispatch mechanism that calls the relevant + loader based on the data type of the data represented by UID. + This method will first check the local cache for UID, and if the key + is not located, will attempt to load it from its location stored in + the registry. + Parameters + ---------- + uid: str + UID of stored date to retrieve. + + Returns + ------- + Union[DataFrame, Series, dict] + Data retrieved from store. + """ + if uid in self._cache: + self.log.info("Loading data {} from cache.".format(uid)) + return self._cache[uid] + + dtype = self._registry.get_type(uid) + if dtype == HDF5: + data = self._load_hdf5(uid) + self._cache[uid] = data + return data + + def _load_hdf5(self, uid): + self.log.warning("Loading HDF5 data from on-disk storage.") + hdf_path = self._registry.get_hdfpath() + with HDFStore(str(hdf_path)) as hdf: + data = hdf.get(uid) + return data + + +def init(path: Path): + """ + Initialize the DataManager with specified base path. All data and + metadata will be stored within this path. + """ + global _manager + if _manager is not None and _manager.init: + return False + _manager = _DataManager(path) + return True + + +def get_manager() -> Union[_DataManager, None]: + if _manager is not None: + return _manager + raise ValueError("DataManager has not been initialized. Call " + "datamanager.init(path)") diff --git a/dgp/lib/plotter.py b/dgp/lib/plotter.py index a678786..5afb3f5 100644 --- a/dgp/lib/plotter.py +++ b/dgp/lib/plotter.py @@ -27,9 +27,9 @@ from pandas import Series import numpy as np -from dgp.lib.types import PlotCurve from dgp.lib.project import Flight from dgp.gui.dialogs import SetLineLabelDialog +import dgp.lib.types as types class BasePlottingCanvas(FigureCanvas): @@ -105,13 +105,14 @@ def __len__(self): ClickInfo = namedtuple('ClickInfo', ['partners', 'x0', 'width', 'xpos', 'ypos']) -LineUpdate = namedtuple('LineUpdate', ['flight_id', 'action', 'uid', 'start', 'stop', 'label']) +LineUpdate = namedtuple('LineUpdate', ['flight_id', 'action', 'uid', 'start', + 'stop', 'label']) class LineGrabPlot(BasePlottingCanvas, QWidget): """ - LineGrabPlot implements BasePlottingCanvas and provides an onclick method to select flight - line segments. + LineGrabPlot implements BasePlottingCanvas and provides an onclick method to + select flight line segments. """ line_changed = pyqtSignal(LineUpdate) @@ -130,13 +131,15 @@ def __init__(self, flight, n=1, fid=None, title=None, parent=None): self.resample = slice(None, None, 20) self._lines = {} self._flight = flight # type: Flight - self._flight_id = fid + self._flight_id = flight.uid # Issue #36 - self._plot_lines = {} # {uid: PlotCurve, ...} + self._plot_lines = {} # {uid: (ax_idx, Line2d), ...} if title: self.figure.suptitle(title, y=1) + else: + self.figure.suptitle(flight.name, y=1) self._stretching = None self._is_near_edge = False @@ -247,60 +250,67 @@ def clear(self): ax.relim() self.draw() + def _set_formatters(self): + """ + Check for lines on plot and set formatters accordingly. + If there are no lines plotted we apply a NullLocator and NullFormatter + If there are lines plotted or about to be plotted, re-apply an + AutoLocator and DateFormatter. + """ + raise NotImplementedError("Method not yet implemented") + # Issue #36 Enable data/channel selection and plotting - def add_series(self, *lines: PlotCurve, draw=True, propogate=True): + def add_series(self, dc: types.DataChannel, axes_idx: int=0, draw=True): """Add one or more data series to the specified axes as a line plot.""" - if not len(self._plot_lines): - # If there are 0 plot lines we need to reset the major locator/formatter - self.log.debug("Re-adding locator and major formatter to empty plot.") + if len(self._plot_lines) == 0: + # If there are 0 plot lines we need to reset the locator/formatter + self.log.debug("Adding locator and major formatter to empty plot.") self.axes[0].xaxis.set_major_locator(AutoLocator()) self.axes[0].xaxis.set_major_formatter(DateFormatter('%H:%M:%S')) - drawn_axes = {} # Record axes that need to be redrawn - for line in lines: - axes = self.axes[line.axes] - drawn_axes[line.axes] = axes - line.line2d = axes.plot(line.data.index, line.data.values, label=line.label)[0] - self._plot_lines[line.uid] = line - if propogate: - self._flight.update_series(line, action="add") - - for axes in drawn_axes.values(): - self.log.info("Adding legend, relim and autoscaling on axes: {}".format(axes)) - axes.legend() - axes.relim() - axes.autoscale_view() + axes = self.axes[axes_idx] + series = dc.series() + dc.plotted = axes_idx + line_artist = axes.plot(series.index, series.values, + label=dc.label)[0] + + self._plot_lines[dc.uid] = axes_idx, line_artist + + self.log.info("Adding legend, relim and autoscaling on axes: {}" + .format(axes)) + axes.legend() + axes.relim() + axes.autoscale_view() - # self.log.info(self._plot_lines) if draw: self.figure.canvas.draw() - def update_series(self, line: PlotCurve): + def update_series(self, line: types.DataChannel): pass - def remove_series(self, uid): - if uid not in self._plot_lines: + def remove_series(self, dc: types.DataChannel): + + if dc.uid not in self._plot_lines: self.log.warning("Series UID could not be located in plot_lines") return - curve = self._plot_lines[uid] # type: PlotCurve - axes = self.axes[curve.axes] # type: Axes - self._flight.update_series(curve, action="remove") - axes.lines.remove(curve.line2d) - # axes.set + axes_idx, line = self._plot_lines[dc.uid] + axes = self.axes[axes_idx] + axes.lines.remove(line) axes.relim() axes.autoscale_view() if not axes.lines: - axes.legend_.remove() # Does this work? It does. + axes.legend_.remove() else: axes.legend() - del self._plot_lines[uid] + del self._plot_lines[dc.uid] + dc.plotted = -1 if len(self._plot_lines) == 0: self.log.warning("No lines on plotter axes.") - line_count = reduce(lambda acc, res: acc + res, (len(x.lines) for x in self.axes)) + line_count = reduce(lambda acc, res: acc + res, + (len(x.lines) for x in self.axes)) if not line_count: self.log.warning("No Lines on any axes.") - # This works, but then need to replace the locator when adding data back print(self.axes[0].xaxis.get_major_locator()) self.axes[0].xaxis.set_major_locator(NullLocator()) self.axes[0].xaxis.set_major_formatter(NullFormatter()) diff --git a/dgp/lib/project.py b/dgp/lib/project.py index 83c7d93..83ea67d 100644 --- a/dgp/lib/project.py +++ b/dgp/lib/project.py @@ -6,13 +6,13 @@ from typing import Union, Type from datetime import datetime -from pandas import HDFStore, DataFrame, Series +from pandas import DataFrame from dgp.gui.qtenum import QtItemFlags, QtDataRoles from dgp.lib.meterconfig import MeterConfig, AT1Meter from dgp.lib.etc import gen_uuid -from dgp.lib.types import FlightLine, TreeItem, DataFile, PlotCurve -import dgp.lib.eotvos as eov +import dgp.lib.types as types +import dgp.lib.datamanager as dm """ Dynamic Gravity Processor (DGP) :: project.py @@ -67,7 +67,7 @@ def can_pickle(attribute): return True -class GravityProject(TreeItem): +class GravityProject(types.TreeItem): """ GravityProject will be the base class defining common values for both airborne and marine gravity survey projects. @@ -104,13 +104,12 @@ def __init__(self, path: pathlib.Path, name: str="Untitled Project", self.name = name self.description = description - # self.hdf_path = os.path.join(self.projectdir, 'prjdata.h5') - self.hdf_path = self.projectdir.joinpath('prjdata.h5') + dm.init(self.projectdir.joinpath('data')) # Store MeterConfig objects in dictionary keyed by the meter name self._sensors = {} - self.log.debug("Gravity Project Initialized") + self.log.debug("Gravity Project Initialized.") def data(self, role: QtDataRoles): if role == QtDataRoles.DisplayRole: @@ -125,34 +124,6 @@ def model(self): def model(self, value): self._model_parent = value - def load_data(self, uid: str, prefix: str = 'data'): - """ - Load data from the project HDFStore (HDF5 format datafile) by uid. - - Parameters - ---------- - uid : str - 32 digit hexadecimal unique identifier for the file to load. - prefix : str - Deprecated - parameter reserved while testing compatibility - Data type prefix, 'gps' or 'gravity' specifying the HDF5 group to - retrieve the file from. - - Returns - ------- - DataFrame - Pandas DataFrame retrieved from HDFStore - """ - self.log.info("Loading data <{}>/{} from HDFStore".format(prefix, uid)) - with HDFStore(str(self.hdf_path)) as store: - try: - data = store.get('{}/{}'.format(prefix, uid)) - except KeyError: - self.log.warning("No data exists for key: {}".format(uid)) - return None - else: - return data - def add_meter(self, meter: MeterConfig) -> MeterConfig: """Add an existing MeterConfig class to the dictionary of meters""" if isinstance(meter, MeterConfig): @@ -282,9 +253,10 @@ def __setstate__(self, state) -> None: """ self.__dict__.update(state) self.log = logging.getLogger(__name__) + dm.init(self.projectdir.joinpath('data')) -class Flight(TreeItem): +class Flight(types.TreeItem): """ Define a Flight class used to record and associate data with an entire survey flight (takeoff -> landing) @@ -326,7 +298,7 @@ def __init__(self, project: GravityProject, name: str, date : datetime.date Datetime object to assign to this flight. """ - self.log = logging.getLevelName(__name__) + self.log = logging.getLogger(__name__) uid = kwargs.get('uuid', gen_uuid('flt')) super().__init__(uid, parent=None) @@ -336,41 +308,21 @@ def __init__(self, project: GravityProject, name: str, self.style = {'icon': ':images/assets/flight_icon.png', QtDataRoles.BackgroundRole: 'LightGray'} self.meter = meter - if 'date' in kwargs: - print("Setting date to: {}".format(kwargs['date'])) - self.date = kwargs['date'] - else: - self.date = "No date set" + self.date = kwargs.get('date', datetime.today()) - self.log = logging.getLogger(__name__) - - # These attributes will hold a file reference string used to retrieve - # data from hdf5 store. - self._gpsdata_uid = None # type: str - self._gravdata_uid = None # type: str - - self._gpsdata = None # type: DataFrame - self._gravdata = None # type: DataFrame - - # Known Absolute Site Reading/Location - self.tie_value = None - self.tie_location = None - - self.pre_still_reading = None - self.post_still_reading = None + # Flight attribute dictionary, containing survey values e.g. still + # reading, tie location/value + self._survey_values = {} self.flight_timeshift = 0 # Issue #36 Plotting data channels - self._channels = {} # {uid: (file_uid, label), ...} - self._plotted_channels = {} # {uid: axes_index, ...} self._default_plot_map = {'gravity': 0, 'long': 1, 'cross': 1} - self._data_cache = {} # {data_uid: DataFrame, ...} - - self._lines = Container(ctype=FlightLine, parent=self, + self._lines = Container(ctype=types.FlightLine, parent=self, name='Flight Lines') - self._data = Container(ctype=DataFile, parent=self, name='Data Files') + self._data = Container(ctype=types.DataSource, parent=self, + name='Data Files') self.append_child(self._lines) self.append_child(self._data) @@ -385,151 +337,42 @@ def data(self, role): def lines(self): return self._lines - @property - def gps(self): - if self._gpsdata_uid is None: - return - if self._gpsdata is None: - self.log.warning("Loading gps data from HDFStore.") - self._gpsdata = self._project.load_data(self._gpsdata_uid) - return self._gpsdata - - @gps.setter - def gps(self, value): - if self._gpsdata_uid: - self.log.warning('GPS Data File already exists, overwriting with ' - 'new value.') - self._gpsdata = None - self._gpsdata_uid = value - - @property - def gps_file(self): - try: - return self._project.data_map[self._gpsdata_uid], self._gpsdata_uid - except KeyError: - return None, None - - @property - def gravity(self): - """ - Property accessor for Gravity data. This accessor will cache loaded - gravity data in an instance variable so that subsequent lookups do - not require an I/O operation. - Returns - ------- - DataFrame - pandas DataFrame containing Gravity Data - """ - if self._gravdata_uid is None: - return None - if self._gravdata is None: - self.log.warning("Loading gravity data from HDFStore.") - self._gravdata = self._project.load_data(self._gravdata_uid) - return self._gravdata - - @gravity.setter - def gravity(self, value): - if self._gravdata_uid: - self.log.warning( - 'Gravity Data File already exists, overwriting with new value.') - self._gravdata = None - self._gravdata_uid = value - - @property - def gravity_file(self): - try: - return self._project.data_map[self._gravdata_uid], \ - self._gravdata_uid - except KeyError: - return None, None - - @property - def eotvos(self): - if self.gps is None: - return None - gps_data = self.gps - # WARNING: It is vital to use the .values of the pandas Series, - # otherwise the eotvos func does not work properly for some reason - index = gps_data['lat'].index - lat = gps_data['lat'].values - lon = gps_data['long'].values - ht = gps_data['ell_ht'].values - rate = 10 - ev_corr = eov.calc_eotvos(lat, lon, ht, rate) - ev_frame = DataFrame(ev_corr, index=index, columns=['eotvos']) - return ev_frame - @property def channels(self): - """Return data channels as map of {uid: label, ...}""" - return {k: self._channels[k][1] for k in self._channels} - - def update_series(self, line: PlotCurve, action: str): - """Update the Flight state tracking for plotted data channels""" - self.log.info( - "Doing {action} on line {line} in {flt}".format(action=action, - line=line.label, - flt=self.name)) - if action == 'add': - self._plotted_channels[line.uid] = line.axes - elif action == 'remove': - try: - del self._plotted_channels[line.uid] - except KeyError: - self.log.error("No plotted line to remove") + """Return data channels as list of DataChannel objects""" + cns = [] + for source in self._data: # type: types.DataSource + cns.extend(source.channels) + return cns def get_plot_state(self): - # Return: {uid: (label, axes), ...} - state = {} - # TODO: Could refactor into dict comp - for uid in self._plotted_channels: - state[uid] = self._channels[uid][1], self._plotted_channels[uid] - return state - - def get_channel_data(self, uid: str): - data_uid, field = self._channels[uid] - if data_uid in self._data_cache: - return self._data_cache[data_uid][field] - else: - self.log.warning( - "Loading datafile {} from HDF5 Store".format(data_uid)) - self._data_cache[data_uid] = self._project.load_data(data_uid) - return self.get_channel_data(uid) - - def add_data(self, data: DataFile): - self._data.append_child(data) - - for col in data.fields: - col_uid = gen_uuid('col') - self._channels[col_uid] = data.uid, col - # If defaults are specified then add them to the plotted_channels - if col in self._default_plot_map: - self._plotted_channels[col_uid] = self._default_plot_map[col] - # print("Plotted: ", self._plotted_channels) - # print(self._channels) + # Return List[DataChannel if DataChannel is plotted] + return [dc for dc in self.channels if dc.plotted != -1] + + def register_data(self, datasrc: types.DataSource): + """Register a data file for use by this Flight""" + self.log.info("Flight {} registering data source: {} UID: {}".format( + self.name, datasrc.filename, datasrc.uid)) + self._data.append_child(datasrc) + # TODO: Set channels within source to plotted if in default plot dict def add_line(self, start: datetime, stop: datetime, uid=None): """Add a flight line to the flight by start/stop index and sequence number""" - # line = FlightLine(len(self.lines), None, start, end, self) self.log.debug( "Adding line to LineContainer of flight: {}".format(self.name)) - line = FlightLine(start, stop, len(self._lines) + 1, None, uid=uid, - parent=self.lines) + line = types.FlightLine(start, stop, len(self._lines) + 1, None, + uid=uid, parent=self.lines) self._lines.append_child(line) - # self.update('add', line) return line def remove_line(self, uid): """ Remove a flight line """ - line = self._lines[uid] self._lines.remove_child(self._lines[uid]) - # self.update('del', line) def clear_lines(self): """Removes all Lines from Flight""" - return - self._lines.clear() + raise NotImplementedError("clear_lines not implemented yet.") def __iter__(self): """ @@ -564,9 +407,9 @@ def __setstate__(self, state): self._gpsdata = None -class Container(TreeItem): +class Container(types.TreeItem): # Arbitrary list of permitted types - ctypes = {Flight, MeterConfig, FlightLine, DataFile} + ctypes = {Flight, MeterConfig, types.FlightLine, types.DataSource} def __init__(self, ctype, parent, *args, **kwargs): """ @@ -644,7 +487,6 @@ def append_child(self, child) -> None: super().append_child(child) def __str__(self): - # return self._name return str(self._children) @@ -672,93 +514,24 @@ def __init__(self, path: pathlib.Path, name, description=None, parent=None): self.log.debug("Airborne project initialized") self.data_map = {} - # print("Project children:") - # for child in self.children: - # print(child.uid) def data(self, role: QtDataRoles): if role == QtDataRoles.DisplayRole: return "{} :: <{}>".format(self.name, self.projectdir.resolve()) return super().data(role) - # TODO: Move this into the GravityProject base class? - # Although we use flight_uid here, this could be abstracted. - def add_data(self, df: DataFrame, path: pathlib.Path, dtype: str, - flight_uid: str): - """ - Add an imported DataFrame to a specific Flight in the project. - Upon adding a DataFrame a UUID is assigned, and together with the data - type it is exported to the project HDFStore into a group specified by - data type i.e. - HDFStore.put('data_type/uuid', packet.data) - The data can then be retrieved from its respective dtype group using the - UUID. The UUID is then stored in the Flight class's data variable for - the respective data_type. - - Parameters - ---------- - df : DataFrame - Pandas DataFrame containing file data. - path : pathlib.Path - Original path to data file as a pathlib.Path object. - dtype : str - The data type of the data (df) being added, either gravity or gps. - flight_uid : str - UUID of the Flight the added data will be assigned/associated with. - - Returns - ------- - bool - True on success, False on failure - Causes of failure: - flight_uid does not exist in self.flights.keys - """ - self.log.debug("Ingesting data and exporting to hdf5 store") - - # Fixes NaturalNameWarning by ensuring first char is letter ('f'). - file_uid = gen_uuid('dat') - - with HDFStore(str(self.hdf_path)) as store: - # format: 'table' pytables format enables searching/appending, - # fixed is more performant. - store.put('data/{uid}'.format(uid=file_uid), df, format='fixed', - data_columns=True) - # Store a reference to the original file path - self.data_map[file_uid] = path - try: - flight = self.get_flight(flight_uid) - - flight.add_data( - DataFile(file_uid, path, [col for col in df.keys()], dtype)) - if dtype == 'gravity': - if flight.gravity is not None: - print("Clearing old FlightLines") - flight.clear_lines() - flight.gravity = file_uid - elif dtype == 'gps': - flight.gps = file_uid - return True - except KeyError: - return False - def update(self, **kwargs): """Used to update the wrapping (parent) ProjectModel of this project for GUI display""" if self.model is not None: - # print("Calling update on parent model with params: {} {}".format( - # action, item)) self.model.update(**kwargs) def add_flight(self, flight: Flight) -> None: flight.parent = self self._flights.append_child(flight) - # self._children['flights'].add_child(flight) - # self.update('add', flight) - - def remove_flight(self, flight: Flight) -> bool: + def remove_flight(self, flight: Flight): self._flights.remove_child(flight) - # self.update('del', flight, parent=flight.parent, row=flight.row()) def get_flight(self, uid): return self._flights.child(uid) diff --git a/dgp/lib/types.py b/dgp/lib/types.py index d6e1a94..f2c508e 100644 --- a/dgp/lib/types.py +++ b/dgp/lib/types.py @@ -1,18 +1,17 @@ # coding: utf-8 -from datetime import datetime from abc import ABCMeta, abstractmethod from collections import namedtuple from typing import Union, Generator -from matplotlib.lines import Line2D from pandas import Series from dgp.lib.etc import gen_uuid from dgp.gui.qtenum import QtItemFlags, QtDataRoles +import dgp.lib.datamanager as dm """ -Dynamic Gravity Processor (DGP) :: types.py +Dynamic Gravity Processor (DGP) :: lib/types.py License: Apache License V2 Overview: @@ -31,8 +30,6 @@ DataCurve = namedtuple('DataCurve', ['channel', 'data']) -# DataFile = namedtuple('DataFile', ['uid', 'filename', 'fields', 'dtype']) - class AbstractTreeItem(metaclass=ABCMeta): """ @@ -65,6 +62,10 @@ def parent(self, value): def children(self): pass + @abstractmethod + def data(self, role): + pass + @abstractmethod def child(self, index): pass @@ -93,10 +94,6 @@ def indexof(self, child): def row(self): pass - @abstractmethod - def data(self, role): - pass - @abstractmethod def flags(self): pass @@ -106,52 +103,19 @@ def update(self, **kwargs): pass -class TreeItem(AbstractTreeItem): +class BaseTreeItem(AbstractTreeItem): """ - TreeItem provides default implementations for common model functions - and should be used as a base class for specialized data structures that - expect to be displayed in a QT Tree View. + Define a lightweight bare-minimum implementation of the + AbstractTreeItem to ease futher specialization in subclasses. """ - - def __init__(self, uid: str, parent: AbstractTreeItem=None): - - # Private BaseClass members - should be accessed via properties - self._parent = parent + def __init__(self, uid, parent: AbstractTreeItem=None): self._uid = uid - self._children = [] # List is required due to need for ordering + self._parent = parent + self._children = [] self._child_map = {} # Used for fast lookup by UID - self._style = {} - self._style_roles = {QtDataRoles.BackgroundRole: 'bg', - QtDataRoles.ForegroundRole: 'fg', - QtDataRoles.DecorationRole: 'icon', - QtDataRoles.FontRole: 'font'} - if parent is not None: parent.append_child(self) - def __str__(self): - return "".format(self._uid) - - def __len__(self): - return len(self._children) - - def __iter__(self): - for child in self._children: - yield child - - def __getitem__(self, key: Union[int, str]): - """Permit child access by ordered index, or UID""" - if not isinstance(key, (int, str)): - raise ValueError("Key must be int or str type") - if type(key) is int: - return self._children[key] - - if type(key) is str: - return self._child_map[key] - - def __contains__(self, item: AbstractTreeItem): - return item in self._children - @property def uid(self) -> str: """Returns the unique identifier of this object.""" @@ -178,41 +142,8 @@ def children(self) -> Generator[AbstractTreeItem, None, None]: for child in self._children: yield child - @property - def style(self): - return self._style - - @style.setter - def style(self, value: dict): - # TODO: Check for valid style params - self._style = value - def data(self, role: QtDataRoles): - """ - Return contextual data based on supplied role. - If a role is not defined or handled by descendents they should return - None, and the model should be take this into account. - TreeType provides a basic default implementation, which will also - handle common style parameters. Descendant classes should provide - their own definition to override specific roles, and then call the - base data() implementation to handle style application. e.g. - >>> def data(self, role: QtDataRoles): - >>> if role == QtDataRoles.DisplayRole: - >>> return "Custom Display: " + self.name - >>> # Allow base class to apply styles if role not caught above - >>> return super().data(role) - """ - if role == QtDataRoles.DisplayRole: - return str(self) - if role == QtDataRoles.ToolTipRole: - return self.uid - # Allow style specification by QtDataRole or by name e.g. 'bg', 'fg' - if role in self._style: - return self._style[role] - if role in self._style_roles: - key = self._style_roles[role] - return self._style.get(key, None) - return None + raise NotImplementedError("data(role) must be implemented in subclass.") def child(self, index: Union[int, str]): if isinstance(index, str): @@ -258,13 +189,32 @@ def remove_child(self, child: Union[AbstractTreeItem, str]): self._children.remove(child) self.update() + def insert_child(self, child: AbstractTreeItem, index: int) -> bool: + if index == -1: + self.append_child(child) + return True + print("Inserting ATI child at index: ", index) + self._children.insert(index, child) + self._child_map[child.uid] = child + self.update() + return True + + def child_count(self): + """Return number of children belonging to this object""" + return len(self._children) + + def column_count(self): + """Default column count is 1, and the current models expect a single + column Tree structure.""" + return 1 + def indexof(self, child) -> Union[int, None]: """Return the index of a child contained in this object""" try: return self._children.index(child) except ValueError: print("Invalid child passed to indexof") - return None + return -1 def row(self) -> Union[int, None]: """Return the row index of this TreeItem relative to its parent""" @@ -272,15 +222,6 @@ def row(self) -> Union[int, None]: return self._parent.indexof(self) return 0 - def child_count(self): - """Return number of children belonging to this object""" - return len(self._children) - - def column_count(self): - """Default column count is 1, and the current models expect a single - column Tree structure.""" - return 1 - def flags(self) -> int: """Returns default flags for Tree Items, override this to enable custom behavior in the model.""" @@ -292,52 +233,110 @@ def update(self, **kwargs): self.parent.update(**kwargs) -class PlotCurve: - def __init__(self, uid: str, data: Series, label: str=None, axes: int=0, - color: str=None): - self._uid = uid - self._data = data - self._label = label - if label is None: - self._label = self._data.name - self.axes = axes - self._line2d = None - self._changed = False +class TreeItem(BaseTreeItem): + """ + TreeItem extends BaseTreeItem and adds some extra convenience methods ( + __str__, __len__, __iter__, __getitem__, __contains__), as well as + defining a default data() method which can apply styles set via the style + property in this class. + """ - @property - def uid(self) -> str: - return self._uid + def __init__(self, uid: str, parent: AbstractTreeItem=None): + super().__init__(uid, parent) + self._style = {} + self._style_roles = {QtDataRoles.BackgroundRole: 'bg', + QtDataRoles.ForegroundRole: 'fg', + QtDataRoles.DecorationRole: 'icon', + QtDataRoles.FontRole: 'font'} - @property - def data(self) -> Series: - return self._data + def __str__(self): + return "".format(self.uid) - @data.setter - def data(self, value: Series): - self._changed = True - self._data = value + def __len__(self): + return self.child_count() + + def __iter__(self): + for child in self.children: + yield child + + def __getitem__(self, key: Union[int, str]): + """Permit child access by ordered index, or UID""" + if not isinstance(key, (int, str)): + raise ValueError("Key must be int or str type") + return self.child(key) + + def __contains__(self, item: AbstractTreeItem): + return item in self.children @property - def label(self) -> str: - return self._label + def style(self): + return self._style + + @style.setter + def style(self, value): + self._style = value + + def data(self, role: QtDataRoles): + """ + Return contextual data based on supplied role. + If a role is not defined or handled by descendents they should return + None, and the model should be take this into account. + TreeType provides a basic default implementation, which will also + handle common style parameters. Descendant classes should provide + their own definition to override specific roles, and then call the + base data() implementation to handle style application. e.g. + >>> def data(self, role: QtDataRoles): + >>> if role == QtDataRoles.DisplayRole: + >>> return "Custom Display: " + self.name + >>> # Allow base class to apply styles if role not caught above + >>> return super().data(role) + """ + if role == QtDataRoles.DisplayRole: + return str(self) + if role == QtDataRoles.ToolTipRole: + return self.uid + # Allow style specification by QtDataRole or by name e.g. 'bg', 'fg' + if role in self._style: + return self._style[role] + if role in self._style_roles: + key = self._style_roles[role] + return self._style.get(key, None) + return None + + +class TreeLabelItem(BaseTreeItem): + """ + A simple Tree Item with a label, to be used as a header/label. This + TreeItem accepts children. + """ + def __init__(self, label: str, supports_drop=False, max_children=None, + parent=None): + super().__init__(uid=gen_uuid('ti'), parent=parent) + self.label = label + self._supports_drop = supports_drop + self._max_children = max_children @property - def line2d(self): - return self._line2d + def droppable(self): + if not self._supports_drop: + return False + if self._max_children is None: + return True + if self.child_count() >= self._max_children: + return False + return True - @line2d.setter - def line2d(self, value: Line2D): - assert isinstance(value, Line2D) - print("Updating line in PlotCurve: ", self._label) - self._line2d = value - print(self._line2d) + def data(self, role: QtDataRoles): + if role == QtDataRoles.DisplayRole: + return self.label + return None class FlightLine(TreeItem): """ Simple TreeItem to represent a Flight Line selection, storing a start and stop index, as well as the reference to the data it relates to. - This TreeItem does not permit the addition of children. + This TreeItem does not accept children. """ def __init__(self, start, stop, sequence, file_ref, uid=None, parent=None): super().__init__(uid, parent) @@ -399,16 +398,59 @@ def __str__(self): name=name, start=self.start, stop=self.stop) -class DataFile(TreeItem): +class DataSource(BaseTreeItem): def __init__(self, uid, filename, fields, dtype): + """Create a DataSource item with UID matching the managed file UID + that it points to.""" super().__init__(uid) self.filename = filename self.fields = fields self.dtype = dtype + self.channels = [DataChannel(field, self) for field in + fields] + + def load(self, field): + return dm.get_manager().load_data(self.uid)[field] def data(self, role: QtDataRoles): if role == QtDataRoles.DisplayRole: return "{dtype}: {fname}".format(dtype=self.dtype, fname=self.filename) - super().data(role) + if role == QtDataRoles.ToolTipRole: + return "UID: {}".format(self.uid) + + def children(self): + return [] + + +class DataChannel(BaseTreeItem): + def __init__(self, label, source: DataSource, parent=None): + super().__init__(gen_uuid('dcn'), parent=parent) + self.label = label + self.field = label + self._source = source + self.plot_style = '' + self._plot_axes = -1 + + @property + def plotted(self): + return self._plot_axes + + @plotted.setter + def plotted(self, value): + self._plot_axes = value + + def series(self, force=False) -> Series: + return self._source.load(self.field) + + def data(self, role: QtDataRoles): + if role == QtDataRoles.DisplayRole: + return self.label + if role == QtDataRoles.UserRole: + return self.field + return None + + def flags(self): + return super().flags() | QtItemFlags.ItemIsDragEnabled | \ + QtItemFlags.ItemIsDropEnabled diff --git a/tests/test_datamanager.py b/tests/test_datamanager.py new file mode 100644 index 0000000..510a0af --- /dev/null +++ b/tests/test_datamanager.py @@ -0,0 +1,55 @@ +# coding: utf-8 + +import unittest +import tempfile +import uuid +import json +from pathlib import Path + +from pandas import DataFrame + +from .context import dgp +import dgp.lib.datamanager as dm + + +class TestDataManager(unittest.TestCase): + + def setUp(self): + data = {'Col1': ['c1-1', 'c1-2', 'c1-3'], 'Col2': ['c2-1', 'c2-2', + 'c2-3']} + self.test_frame = DataFrame.from_dict(data) + + def tearDown(self): + pass + + def test_dm_init(self): + td = Path(tempfile.gettempdir()).joinpath(str(uuid.uuid4())) + with self.assertRaises(ValueError): + mgr = dm.get_manager() + + dm.init(td) + self.assertTrue(td.exists()) + + mgr = dm.get_manager() + self.assertEqual(mgr.dir, td) + self.assertIsInstance(mgr, dm._DataManager) + + def test_dm_save_hdf(self): + mgr = dm.get_manager() + self.assertTrue(mgr.init) + + res = mgr.save_data('hdf5', self.test_frame) + loaded = mgr.load_data(res) + self.assertTrue(self.test_frame.equals(loaded)) + # print(mgr._registry) + + @unittest.skip + def test_dm_double_init(self): + td2 = Path(tempfile.gettempdir()).joinpath(str(uuid.uuid4())) + dm2 = dm._DataManager(td2) + + def test_registry(self): + reg_tmp = Path(tempfile.gettempdir()).joinpath(str(uuid.uuid4())) + reg_tmp.mkdir(parents=True) + reg = dm._Registry(reg_tmp) + # print(reg.registry) diff --git a/tests/test_project.py b/tests/test_project.py index a5e4fc8..3cc87af 100644 --- a/tests/test_project.py +++ b/tests/test_project.py @@ -17,7 +17,8 @@ class TestProject(unittest.TestCase): def setUp(self): """Set up some dummy classes for testing use""" self.todelete = [] - self.project = AirborneProject(path='tests', name='Test Airborne Project') + self.project = AirborneProject(path=Path('./tests'), + name='Test Airborne Project') # Sample values for testing meter configs self.meter_vals = { @@ -32,8 +33,10 @@ def setUp(self): def test_project_directory(self): """ Test the handling of the directory specifications within a project - Project should take an existing directory as a path, raising FileNotFoundError if it doesnt exist. - If the path exists but is a file, Project should automatically strip the leaf and use the parent path. + Project should take an existing directory as a path, raising + FileNotFoundError if it doesnt exist. + If the path exists but is a file, Project should automatically strip the + leaf and use the parent path. """ with self.assertRaises(FileNotFoundError): project = GravityProject(path=Path('tests/invalid_dir')) @@ -82,47 +85,21 @@ def test_associate_flight_data(self): flt = Flight(self.at1a5) self.project.add_flight(flt) - data1 = 'tests/test_data.csv' - self.project.add_data(data1, flight=flt) - - data1path = os.path.abspath(data1) - self.assertTrue(data1path in self.project.data_sources.values()) - - test_df = read_at1a(data1) - grav_data, gps_data = self.project.get_data(flt) - self.assertTrue(test_df.equals(grav_data)) - self.assertIsNone(gps_data) class TestFlight(unittest.TestCase): def setUp(self): self._trj_data_path = 'tests/sample_data/eotvos_short_input.txt' - def test_flight_gps(self): - td = tempfile.TemporaryDirectory() - hdf_temp = Path(str(td.name)).joinpath('hdf5.h5') - prj = AirborneProject(Path(str(td.name)), 'test') - prj.hdf_path = hdf_temp - flight = Flight(prj, 'testflt') - prj.add_flight(flight) - self.assertEqual(len(list(prj.flights)), 1) - gps_fields = ['mdy', 'hms', 'lat', 'long', 'ortho_ht', 'ell_ht', 'num_stats', 'pdop'] - traj_data = import_trajectory(self._trj_data_path, columns=gps_fields, skiprows=1, - timeformat='hms') - # dp = DataPacket(traj_data, self._trj_data_path, 'gps') - - prj.add_data(traj_data, self._trj_data_path, 'gps', flight.uid) - # prj.add_data(dp, flight.uid) - # print(flight.gps_file) - self.assertTrue(flight.gps is not None) - self.assertTrue(flight.eotvos is not None) - # TODO: Line by line comparison of eotvos data from flight - - try: - td.cleanup() - except OSError: - print("error") + def test_flight_init(self): + """Test initialization properties of a new Flight""" + with tempfile.TemporaryDirectory() as td: + project_dir = Path(td) + project = AirborneProject(path=project_dir, name='TestFlightPrj') + flt = Flight(project, 'Flight1') + assert flt.channels == [] + self.assertEqual(len(flt), 0) class TestMeterconfig(unittest.TestCase): diff --git a/tests/test_treemodel.py b/tests/test_treemodel.py index d9af55e..4ec31b9 100644 --- a/tests/test_treemodel.py +++ b/tests/test_treemodel.py @@ -70,6 +70,7 @@ def test_tree_len(self): self.assertEqual(len(self.ti), 2) def test_tree_getitem(self): + """Test getitem [] usage with int index and string uid""" self.ti.append_child(self.child0) self.ti.append_child(self.child1) From 65acf58977207799af0dc2349de7cd3a3ef6f857 Mon Sep 17 00:00:00 2001 From: Zac Brady Date: Thu, 14 Dec 2017 12:17:35 -0700 Subject: [PATCH 030/236] Feature/#48 plotter (#53) * ENH/FIX: ENhancements/Fixes prior to transform implementation. Enh: Implement twin Y axis scales on plots. Enh: Improve Plotter sub-plot generation code. Allow the layout to be re-initialized with different parameters. Enh: Add prototype interface for Transform functionality on Flight sub-tab. Fix: Fixed behavior of ChannelListModel when it is used in multiple instances - i.e. on the main plot, and the transform plot. The DataSource class was modified to return a unique set of DataChannels, instead of creating a single instance of each channel, which could then be mutated by multiple models - leading to unexpected behavior. * ENH: Re-write plotter.py, speed improvements, modularity. ENH: Large re-write of the plotter.py module, including most of LineGrabPlot class. Added AxesGroup and PatchGroup classes to conceptually group related Axes and Patches (Flight Lines) to ease the process of doing batch operations on the plots. * ENH/FIX: Updates and fixes to plotter re-write. ENH: Implemented contextual cursors that change dependant on mouse location on the plot (e.g. drag handles at edge of flight lines) FIX: Fixed/improved proximity calculations by using percentage system which scales the proximity values based on the X-limits of the axes. DOC: Added more documentation to new classes/methods. * ENH/FIX: Fixed plot scaling issues, implement re-sampling. Fixed plot scaling issues e.g. when user plotted a data line while zoomed in on an Axes, using the default Home button on the MPL toolbar would create undesired results. Re-implemented plot resampling method to up/down-sample data based on zoom level for some performance gains in the interactive plot. * FIX: Fixed no len() method in LineGrabPlot Fix bug when creating new flight due to code modification in the BasePlottingCanvas class. __len__ method has now been added to the LineGrabPlot. * FIX: Patch and label drawing issues. Fixed patch not drawing after label is set until mouse movement. Fixed text display when label is removed to display empty string. Fixed label position not updating/drawing on zoom in axes where zoom occured. --- dgp/gui/main.py | 8 +- dgp/gui/models.py | 285 ++++--- dgp/gui/ui/main_window.ui | 62 +- dgp/gui/widgets.py | 152 +++- dgp/lib/plotter.py | 1509 ++++++++++++++++++++++++------------- dgp/lib/project.py | 10 +- dgp/lib/types.py | 129 +++- examples/plot_example.py | 68 +- 8 files changed, 1473 insertions(+), 750 deletions(-) diff --git a/dgp/gui/main.py b/dgp/gui/main.py index 32c3ec7..5f97516 100644 --- a/dgp/gui/main.py +++ b/dgp/gui/main.py @@ -22,7 +22,7 @@ from dgp.gui.dialogs import (AddFlight, CreateProject, InfoDialog, AdvancedImport) from dgp.gui.models import TableModel, ProjectModel -from dgp.gui.widgets import FlightTab +from dgp.gui.widgets import FlightTab, TabWorkspace # Load .ui form @@ -92,7 +92,8 @@ def __init__(self, project: Union[prj.GravityProject, 'Desktop') # Issue #50 Flight Tabs - self._tabs = self.tab_workspace # type: QTabWidget + self._tabs = self.tab_workspace # type: TabWorkspace + # self._tabs = CustomTabWidget() self._open_tabs = {} # Track opened tabs by {uid: tab_widget, ...} self._context_tree = self.contextual_tree # type: QTreeView self._context_tree.setRootIsDecorated(False) @@ -174,6 +175,7 @@ def set_logging_level(self, name: str): def write_console(self, text, level): """PyQt Slot: Logs a message to the GUI console""" + # TODO: log_color is defined elsewhere, use it. log_color = {'DEBUG': QColor('DarkBlue'), 'INFO': QColor('Green'), 'WARNING': QColor('Red'), 'ERROR': QColor('Pink'), 'CRITICAL': QColor('Orange')}.get(level.upper(), @@ -219,7 +221,7 @@ def _launch_tab(self, index: QtCore.QModelIndex=None, flight=None) -> None: self._tabs.setCurrentIndex(t_idx) def _tab_closed(self, index: int): - # TODO: This will handle close requests for a tab + # TODO: Should we delete the tab, or pop it off the stack to a cache? self.log.warning("Tab close requested for tab: {}".format(index)) flight_id = self._tabs.widget(index).flight.uid self._tabs.removeTab(index) diff --git a/dgp/gui/models.py b/dgp/gui/models.py index a93bbe0..a84197a 100644 --- a/dgp/gui/models.py +++ b/dgp/gui/models.py @@ -1,20 +1,10 @@ # coding: utf-8 -""" -Provide definitions of the models used by the Qt Application in our -model/view widgets. -Defines: -TableModel -ProjectModel -SelectionDelegate -ChannelListModel -""" - import logging -from typing import Union, List +from typing import List, Dict import PyQt5.QtCore as QtCore -from PyQt5 import Qt +import PyQt5.Qt as Qt from PyQt5.Qt import QWidget from PyQt5.QtCore import (QModelIndex, QVariant, QAbstractItemModel, QMimeData, pyqtSignal, pyqtBoundSignal) @@ -22,7 +12,23 @@ from PyQt5.QtWidgets import QComboBox from dgp.gui.qtenum import QtDataRoles, QtItemFlags -from dgp.lib.types import AbstractTreeItem, TreeItem, TreeLabelItem, DataChannel +from dgp.lib.types import (AbstractTreeItem, BaseTreeItem, TreeItem, + ChannelListHeader, DataChannel) +from dgp.lib.etc import gen_uuid + +""" +Dynamic Gravity Processor (DGP) :: gui/models.py +License: Apache License V2 + +Overview: +Defines the various custom Qt Models derived from QAbstract*Model used to +display data in the graphical interface via a Q*View (List/Tree/Table) + +See Also +-------- +dgp.lib.types.py : Defines many of the objects used within the models + +""" class TableModel(QtCore.QAbstractTableModel): @@ -263,8 +269,7 @@ def data(self, index: QModelIndex, role: QtDataRoles=None): return QVariant(data) - @staticmethod - def flags(index: QModelIndex) -> QtItemFlags: + def flags(self, index: QModelIndex) -> QtItemFlags: """Return the flags of an item at the specified ModelIndex""" if not index.isValid(): return QtItemFlags.NoItemFlags @@ -321,73 +326,76 @@ class ChannelListModel(BaseTreeModel): """ Tree type model for displaying/plotting data channels. This model supports drag and drop internally. + + Attributes + ---------- + _plots : dict(int, ChannelListHeader) + Mapping of plot index to the associated Tree Item of type + ChannelListHeader + channels : dict(str, DataChannel) + Mapping of DataChannel UID to DataChannel + _default : ChannelListHeader + The default container for channels if they are not assigned to a plot + plotOverflow : pyqtSignal(str) + Signal emitted when drop operation would result in too many children, + ChannelListHeader.uid is passed. + channelChanged : pyqtSignal(int, DataChannel) + Signal emitted when DataChannel has been dropped to new parent/header + Emits index of new header, and the DataChannel that was changed. + """ plotOverflow = pyqtSignal(str) # type: pyqtBoundSignal - # signal(int: new index, int: old index, DataChannel) - # return -1 if item removed from plots to available list - channelChanged = pyqtSignal(int, int, DataChannel) # type: pyqtBoundSignal + channelChanged = pyqtSignal(int, DataChannel) # type: pyqtBoundSignal def __init__(self, channels: List[DataChannel], plots: int, parent=None): - """ - Init sets up a model with n+1 top-level headers where n = plots. - Each plot has a header that channels can then be dragged to from the - available channel list. - The available channels list (displayed below the plot headers is - constructed from the list of channels supplied. - The plot headers limit the number of items that can be children to 2, - this is so that the MatplotLib plotting canvas can display a left and - right Y axis scale for each plot. - - Parameters - ---------- - channels : List[DataChannel] - plots - parent - """ - super().__init__(TreeLabelItem('Channel Selection'), parent=parent) - # It might be worthwhile to create a dedicated plot TreeItem for comp + super().__init__(BaseTreeItem(gen_uuid('base')), parent=parent) self._plots = {} - self._child_limit = 2 for i in range(plots): - plt_label = TreeLabelItem('Plot {}'.format(i), True, 2) - self._plots[i] = plt_label - self.root.append_child(plt_label) - self._available = TreeLabelItem('Available Channels') - self._channels = {} - # for channel in channels: - # self._available.append_child(channel) - # self._channels[channel.uid] = channel - self._build_model(channels) - self.root.append_child(self._available) - - def _build_model(self, channels: List[DataChannel]): - """Build the model representation""" - for channel in channels: # type: DataChannel - self._channels[channel.uid] = channel - if channel.plotted != -1: - self._plots[channel.plotted].append_child(channel) - else: - self._available.append_child(channel) + plt_header = ChannelListHeader(i, ctype='Plot', max_children=2) + self._plots[i] = plt_header + self.root.append_child(plt_header) - def append_channel(self, channel: DataChannel): - self._available.append_child(channel) - self._channels[channel.uid] = channel + self._default = ChannelListHeader() + self.root.append_child(self._default) - def remove_channel(self, uid: str) -> bool: - if uid not in self._channels: - return False - cn = self._channels[uid] # type: DataChannel - cn_parent = cn.parent - cn_parent.remove_child(cn) - del self._channels[uid] - return True + self.channels = self._build_model(channels) + + def _build_model(self, channels: list) -> Dict[str, DataChannel]: + """Build the model representation""" + rv = {} + for dc in channels: # type: DataChannel + rv[dc.uid] = dc + if dc.index == -1: + self._default.append_child(dc) + continue + try: + self._plots[dc.index].append_child(dc) + except KeyError: + self.log.warning('Channel {} could not be plotted, plot does ' + 'not exist'.format(dc.uid)) + dc.plot(None) + self._default.append_child(dc) + return rv + + def clear(self): + """Remove all channels from the model""" + for dc in self.channels.values(): + dc.orphan() + self.channels = None + self.update() + + def set_channels(self, channels: list): + self.clear() + self.channels = self._build_model(channels) + self.update() def move_channel(self, uid, index) -> bool: """Move channel specified by uid to parent at index""" + raise NotImplementedError("Method not yet implemented or required.") def update(self) -> None: - """Update the model layout.""" + """Update the models view layout.""" self.layoutAboutToBeChanged.emit() self.layoutChanged.emit() @@ -416,53 +424,94 @@ def supportedDragActions(self): def dropMimeData(self, data: QMimeData, action, row, col, parent: QModelIndex) -> bool: """ - Called when data is dropped into the model. - This model accepts only Move actions, and expects the data to be - textual, containing the UID of the DataChannel that is being dropped. - This method will also check to see that a drop will not violate the - _child_limit, as we want to limit the number of children to 2 for any - plot, allowing us to display twin y-axis scales. + Called by the Q*x*View when a Mime Data object is dropped within its + frame. + This model supports only the Qt.MoveAction, and will reject any others. + This method will check several properties before accepting/executing + the drop action. + + - Verify that action == Qt.MoveAction + - Ensure data.hasText() is True + - Lookup the channel referenced by data, ensure it exists + - Check that the destination (parent) will not exceed its max_child + limit if the drop is accepted. + + Also note that if a channel is somehow dropped to an invalid index, + it will simply be added back to the default container (Available + Channels) + + Parameters + ---------- + data : QMimeData + A QMimeData object containing text data with a DataChannel UID + action : Qt.DropActions + An Enum/Flag passed by the View. Must be of value Qt::MoveAction + row, col : int + Row and column of the parent that the data has been dropped on/in. + If row and col are both -1, the data has been dropped directly on + the parent. + parent : QModelIndex + The QModelIndex of the model item that the data has been dropped + in or on. + + Returns + ------- + result : bool + True on sucessful drop. + False if drop is rejected. + Failure may be due to the parent having too many children, + or the data did not have a properly encoded UID string, or the + UID could not be looked up in the model channels. + """ if action != QtCore.Qt.MoveAction: return False if not data.hasText(): return False - drop_object = self._channels.get(data.text(), None) # type: DataChannel - if drop_object is None: + dc = self.channels.get(data.text(), None) # type: DataChannel + if dc is None: return False if not parent.isValid(): - if row == -1: - p_item = self._available - drop_object.plotted = False - drop_object.axes = -1 + # An invalid parent can be caused if an item is dropped between + # headers, as its parent is then the root object. In this case + # try to get the header it was dropped under from the _plots map. + # If we can get a valid ChannelListHeader, set destination to + # that, and recreate the parent QModelIndex to point refer to the + # new destination. + if row-1 in self._plots: + destination = self._plots[row-1] + parent = self.index(row-1, 0) else: - p_item = self.root.child(row-1) + # Otherwise if the object was in the _default header, and is + # dropped in an invalid manner, don't remove and re-add it to + # the _default, just abort the move. + if dc.parent == self._default: + return False + destination = self._default + parent = self.index(self._default.row(), 0) else: - p_item = parent.internalPointer() # type: TreeLabelItem - if p_item.child_count() >= self._child_limit: - if p_item != self._available: - self.plotOverflow.emit(p_item.uid) - return False - - # Remove the object to be dropped from its previous parent - drop_parent = drop_object.parent - drop_parent.remove_child(drop_object) - self.beginInsertRows(parent, row, row) - # For simplicity, simply append as the sub-order doesn't matter - drop_object.axes = p_item.row() - p_item.append_child(drop_object) + destination = parent.internalPointer() + + if destination.max_children is not None and ( + destination.child_count() + 1 > destination.max_children): + self.plotOverflow.emit(destination.uid) + return False + + old_index = self.index(dc.parent.row(), 0) + # Remove channel from old parent/header + self.beginRemoveRows(old_index, dc.row(), dc.row()) + dc.orphan() + self.endRemoveRows() + + # Add channel to new parent/header + n_row = destination.child_count() + self.beginInsertRows(parent, n_row, n_row) + destination.append_child(dc) self.endInsertRows() - if drop_parent is self._available: - old_row = -1 - else: - old_row = drop_parent.row() - if p_item is self._available: - row = -1 - else: - row = p_item.row() - self.channelChanged.emit(row, old_row, drop_object) + + self.channelChanged.emit(destination.index, dc) self.update() return True @@ -472,17 +521,39 @@ def canDropMimeData(self, data: QMimeData, action, row, col, parent: Queried when Mime data is dragged over/into the model. Returns True if the data can be dropped. Does not guarantee that it will be accepted. + + This method simply checks that the data has text within it. + + Returns + ------- + canDrop : bool + True if data can be dropped at the hover location. + False if the data cannot be dropped at the location. """ if data.hasText(): return True return False - def mimeData(self, indexes): - """Get the mime encoded data for selected index.""" + def mimeData(self, indexes) -> QMimeData: + """ + Create a QMimeData object for the item(s) specified by indexes. + + This model simply encodes the UID of the selected item (index 0 of + indexes - single selection only), into text/plain MIME object. + + Parameters + ---------- + indexes : list(QModelIndex) + List of QModelIndexes of the selected model items. + + Returns + ------- + QMimeData + text/plain QMimeData object, containing model item UID. + + """ index = indexes[0] item_uid = index.internalPointer().uid - print("UID for picked item: ", item_uid) - print("Picked item label: ", index.internalPointer().label) data = QMimeData() data.setText(item_uid) return data diff --git a/dgp/gui/ui/main_window.ui b/dgp/gui/ui/main_window.ui index 9ede521..2570bf9 100644 --- a/dgp/gui/ui/main_window.ui +++ b/dgp/gui/ui/main_window.ui @@ -41,59 +41,7 @@ 0 - - - - 0 - 3 - - - - QFrame::StyledPanel - - - - 0 - - - 0 - - - 0 - - - 0 - - - 0 - - - - - - 0 - 500 - - - - true - - - false - - - -1 - - - true - - - true - - - - - + @@ -703,6 +651,14 @@ + + + TabWorkspace + QTabWidget +

dgp.gui.widgets
+ 1 + + prj_add_flight diff --git a/dgp/gui/widgets.py b/dgp/gui/widgets.py index aa0846f..0e1d337 100644 --- a/dgp/gui/widgets.py +++ b/dgp/gui/widgets.py @@ -4,10 +4,14 @@ import logging -from PyQt5.QtGui import QDropEvent, QDragEnterEvent, QDragMoveEvent -from PyQt5.QtWidgets import QWidget, QVBoxLayout, QTabWidget - +from PyQt5.QtGui import (QDropEvent, QDragEnterEvent, QDragMoveEvent, + QContextMenuEvent) from PyQt5.QtCore import QMimeData, Qt, pyqtSignal, pyqtBoundSignal +from PyQt5.QtWidgets import (QWidget, QVBoxLayout, QGridLayout, QTabWidget, + QTreeView, QStackedWidget, QSizePolicy) +import PyQt5.QtWidgets as QtWidgets +import PyQt5.QtGui as QtGui + from dgp.lib.plotter import LineGrabPlot, LineUpdate from dgp.lib.project import Flight @@ -61,7 +65,7 @@ def uid(self): class PlotTab(WorkspaceWidget): """Sub-tab displayed within Flight tab interface. Displays canvas for plotting data series.""" - def __init__(self, flight, label, axes: int, **kwargs): + def __init__(self, flight: Flight, label: str, axes: int, **kwargs): super().__init__(label, **kwargs) self.log = logging.getLogger('PlotTab') @@ -76,12 +80,9 @@ def __init__(self, flight, label, axes: int, **kwargs): self._apply_state() self._init_model() - def _apply_state(self): + def _apply_state(self) -> None: """ Apply saved state to plot based on Flight plot channels. - Returns - ------- - """ state = self._flight.get_plot_state() draw = False @@ -89,13 +90,14 @@ def _apply_state(self): self._plot.add_series(dc, dc.plotted) for line in self._flight.lines: - self._plot.draw_patch(line.start, line.stop, line.uid) + self._plot.add_patch(line.start, line.stop, line.uid, + label=line.label) draw = True if draw: self._plot.draw() def _init_model(self): - channels = list(self._flight.channels) + channels = self._flight.channels plot_model = models.ChannelListModel(channels, len(self._plot)) plot_model.plotOverflow.connect(self._too_many_children) plot_model.channelChanged.connect(self._on_channel_changed) @@ -104,11 +106,8 @@ def _init_model(self): def data_modified(self, action: str, uid: str): self.log.info("Adding channels to model.") - channels = list(self._flight.channels) - for cn in channels: - self.model.append_channel(cn) - self.model.update() - # self._init_model() + channels = self._flight.channels + self.model.set_channels(channels) def _on_modified_line(self, info: LineUpdate): flight = self._flight @@ -135,28 +134,80 @@ def _on_modified_line(self, info: LineUpdate): .format(flt=flight.name, start=info.start, stop=info.stop, label=info.label)) - def _on_channel_changed(self, new, old, channel: types.DataChannel): - self.log.info("Channel change request: new{} old{}".format(new, old)) - if new == -1: - self.log.debug("Removing series from plot") - self._plot.remove_series(channel) - return - if old == -1: - self.log.info("Adding series to plot") - self._plot.add_series(channel, new) - return + def _on_channel_changed(self, new: int, channel: types.DataChannel): + self.log.info("Channel change request: new index: {}".format(new)) + self.log.debug("Moving series on plot") - # self._plot.move_series(channel.uid, new) self._plot.remove_series(channel) - self._plot.add_series(channel, new) - return + if new != -1: + self._plot.add_series(channel, new) + else: + print("destination is -1") + self.model.update() def _too_many_children(self, uid): self.log.warning("Too many children for plot: {}".format(uid)) class TransformTab(WorkspaceWidget): - pass + def __init__(self, flight, label, *args, **kwargs): + super().__init__(label) + self._flight = flight + self._elements = {} + + self._setupUi() + self._init_model() + + def _setupUi(self) -> None: + """ + Initialize the UI Components of the Transform Tab. + Major components (plot, transform view, info panel) are added to the + instance _elements dict. + + """ + grid = QGridLayout() + transform = QTreeView() + transform.setSizePolicy(QSizePolicy.Minimum, + QSizePolicy.Expanding) + info = QtWidgets.QTextEdit() + info.setSizePolicy(QSizePolicy.Minimum, QSizePolicy.Minimum) + + plot = LineGrabPlot(self._flight, 2) + plot.setSizePolicy(QSizePolicy.Expanding, QSizePolicy.Expanding) + plot_toolbar = plot.get_toolbar() + + # Testing layout + btn = QtWidgets.QPushButton("Add") + btn.setSizePolicy(QSizePolicy.Maximum, QSizePolicy.Maximum) + btn.pressed.connect(lambda: info.show()) + + btn2 = QtWidgets.QPushButton("Remove") + btn2.setSizePolicy(QSizePolicy.Maximum, QSizePolicy.Maximum) + btn2.pressed.connect(lambda: info.hide()) + + grid.addWidget(transform, 0, 0) + grid.addWidget(btn, 2, 0) + grid.addWidget(btn2, 3, 0) + grid.addWidget(info, 1, 0) + grid.addWidget(plot, 0, 1, 3, 1) + grid.addWidget(plot_toolbar, 3, 1) + + self.setLayout(grid) + + elements = {'transform': transform, + 'plot': plot, + 'toolbar': plot_toolbar, + 'info': info} + self._elements.update(elements) + + def _init_model(self): + channels = self._flight.channels + plot_model = models.ChannelListModel(channels, len(self._elements[ + 'plot'])) + # plot_model.plotOverflow.connect(self._too_many_children) + # plot_model.channelChanged.connect(self._on_channel_changed) + plot_model.update() + self.model = plot_model class MapTab(WorkspaceWidget): @@ -181,7 +232,8 @@ def __init__(self, flight: Flight, parent=None, flags=0, **kwargs): # Define Sub-Tabs within Flight space e.g. Plot, Transform, Maps self._plot_tab = PlotTab(flight, "Plot", 3) - self._transform_tab = WorkspaceWidget("Transforms") + # self._transform_tab = WorkspaceWidget("Transforms") + self._transform_tab = TransformTab(flight, "Transforms") self._map_tab = WorkspaceWidget("Map") self._workspace.addTab(self._plot_tab, "Plot") @@ -226,3 +278,43 @@ def context_model(self): are switched.""" current_tab = self._workspace.currentWidget() # type: WorkspaceWidget return current_tab.model + + +class CustomTabBar(QtWidgets.QTabBar): + """Custom Tab Bar to allow us to implement a custom Context Menu to + handle right-click events.""" + def __init__(self, parent=None): + super().__init__(parent=parent) + self.setShape(self.RoundedNorth) + self.setTabsClosable(True) + self.setMovable(True) + + self._actions = [] # Store action objects to keep a reference so no GC + # Allow closing tab via Ctrl+W key shortcut + _close_action = QtWidgets.QAction("Close") + _close_action.triggered.connect( + lambda: self.tabCloseRequested.emit(self.currentIndex())) + _close_action.setShortcut(QtGui.QKeySequence("Ctrl+W")) + self.addAction(_close_action) + self._actions.append(_close_action) + + def contextMenuEvent(self, event: QContextMenuEvent, *args, **kwargs): + tab = self.tabAt(event.pos()) + + menu = QtWidgets.QMenu() + menu.setTitle('Tab: ') + kill_action = QtWidgets.QAction("Kill") + kill_action.triggered.connect(lambda: self.tabCloseRequested.emit(tab)) + + menu.addAction(kill_action) + + menu.exec_(event.globalPos()) + event.accept() + + +class TabWorkspace(QtWidgets.QTabWidget): + def __init__(self, parent=None): + super().__init__(parent=parent) + + bar = CustomTabBar() + self.setTabBar(bar) diff --git a/dgp/lib/plotter.py b/dgp/lib/plotter.py index 5afb3f5..e7d6d4e 100644 --- a/dgp/lib/plotter.py +++ b/dgp/lib/plotter.py @@ -7,24 +7,23 @@ from dgp.lib.etc import gen_uuid import logging -import datetime from collections import namedtuple -from typing import List, Tuple -from functools import reduce +from typing import Dict, Tuple, Union -# from PyQt5 import QtWidgets from PyQt5.QtWidgets import QSizePolicy, QMenu, QAction, QWidget, QToolBar from PyQt5.QtCore import pyqtSignal, QMimeData from PyQt5.QtGui import QCursor, QDropEvent, QDragEnterEvent, QDragMoveEvent -from matplotlib.backends.backend_qt5agg import (FigureCanvasQTAgg as FigureCanvas, - NavigationToolbar2QT as NavigationToolbar) +import PyQt5.QtCore as QtCore +from matplotlib.backends.backend_qt5agg import ( + FigureCanvasQTAgg as FigureCanvas, NavigationToolbar2QT as NavigationToolbar) from matplotlib.figure import Figure from matplotlib.axes import Axes from matplotlib.dates import DateFormatter, num2date, date2num from matplotlib.ticker import NullFormatter, NullLocator, AutoLocator from matplotlib.backend_bases import MouseEvent, PickEvent from matplotlib.patches import Rectangle -from pandas import Series +from matplotlib.lines import Line2D +from matplotlib.text import Annotation import numpy as np from dgp.lib.project import Flight @@ -32,62 +31,623 @@ import dgp.lib.types as types +_log = logging.getLogger(__name__) +EDGE_PROX = 0.005 + +# Monkey patch the MPL Nav toolbar home button. We'll provide custom action +# by attaching a event listener to the toolbar action trigger. +# Save the default home method in case another plot desires the default behavior +NT_HOME = NavigationToolbar.home +NavigationToolbar.home = lambda *args: None + + +class AxesGroup: + """ + AxesGroup conceptually groups a set of sub-plot Axes together, and allows + for easier operations on multiple Axes at once, especially when dealing + with plot Patches and Annotations. + + Parameters + ---------- + *axes : List[Axes] + Positional list of 1 or more Axes (sub-plots) to add to this AxesGroup + twin : bool, Optional + If True, create 'twin' subplots for each of the passed plots, sharing + the X-Axis. + Default : False + + Attributes + ---------- + axes : Dict[int, Axes] + Dictionary of Axes objects keyed by int Index + twins : Union[Dict[int, Axes], None] + If the AxesGroup is initialized with twin=True, the resultant twinned + Axes objects are stored here, keyed by int Index matching that of + their parent Axes. + patches : Dict[str, PatchGroup] + Dictionary of PatchGroups keyed by the groups UID + PatchGroups contain partnered Rectangle Patches which are displayed + at the same location across all active primary Axes. + patch_pct : Float + Percentage width of Axes to initially create Patch Rectangles + expressed as a Float value. + + """ + + def __init__(self, *axes, twin=False, parent=None): + assert len(axes) >= 1 + self.parent = parent + self.axes = dict(enumerate(axes)) # type: Dict[int, Axes] + self._ax0 = self.axes[0] + if twin: + self.twins = {i: ax.twinx() for i, ax in enumerate(axes)} + else: + self.twins = None + + self.patches = {} # type: Dict[str, PatchGroup] + self.patch_pct = 0.05 + + self._selected = None # type: PatchGroup + self._select_loc = None + self._stretch = None + self._highlighted = None # type: PatchGroup + + # Map ax index to x/y limits of original data + self._base_ax_limits = {} + + def __contains__(self, item: Axes): + if item in self.axes.values(): + return True + if self.twins is None: + return False + if item in self.twins.values(): + return True + + def __getattr__(self, item): + """ + Used to get methods in the selected PatchGroup of this AxesGroup, + if there is one. If there is no selection, we return an empty lambda + function which takes args/kwargs and returns None. + + This functionality may not be necesarry, as we are dealing with most + of the selected operatiosn within the AxesGroup now. + """ + if hasattr(self._selected, item): + return getattr(self._selected, item) + else: + print("_active is None or doesn't have attribute: ", item) + return lambda *x, **y: None + + @property + def all_axes(self): + """Return a list of all Axes objects, including Twin Axes (if they + exist)""" + axes = list(self.axes.values()) + if self.twins is not None: + axes.extend(self.twins.values()) + return axes + + def select(self, xdata, prox=EDGE_PROX, inner=False): + """ + Select any patch group at the specified xdata location. Return True + if a PatchGroup was selected, False if there was no group to select. + Use prox and inner to specify tolerance of selection. + + Parameters + ---------- + xdata + prox : float + Add/subtract the specified width from the right/left edge of the + patch groups when checking for a hit. + inner : bool + Specify whether a patch should enter stretch mode only if the + click is inside its left/right bounds +/- prox. Or if False, + set the patch to stretch if the click is just outside of the + rectangle (within proximity) + + Returns + ------- + bool: + True if PatchGroup selected + False if no PatchGroup at xdata location + + """ + for pg in self.patches.values(): + if pg.contains(xdata, prox): + self._selected = pg + edge = pg.get_edge(xdata, prox=prox, inner=inner) + pg.set_edge(edge, 'red', select=True) + pg.animate() + self._select_loc = xdata + self.parent.setCursor(QtCore.Qt.ClosedHandCursor) + return True + else: + return False + + def deselect(self) -> None: + """ + Deselect the active PatchGroup (if there is one), and reset the cursor. + """ + if self._selected is not None: + self._selected.unanimate() + self._selected = None + self.parent.setCursor(QtCore.Qt.PointingHandCursor) + + @property + def active(self) -> Union['PatchGroup', None]: + return self._selected + + def highlight_edge(self, xdata: float) -> None: + """ + Called on motion event if a patch isn't selected. Highlight the edge + of a patch if it is under the mouse location. + Return all other edges to black + + Parameters + ---------- + xdata : float + Mouse x-location in plot data coordinates + + """ + self.parent.setCursor(QtCore.Qt.ArrowCursor) + if not len(self.patches): + return + for patch in self.patches.values(): # type: PatchGroup + if patch.contains(xdata): + edge = patch.get_edge(xdata, inner=False) + if edge is not None: + self.parent.setCursor(QtCore.Qt.SizeHorCursor) + else: + self.parent.setCursor(QtCore.Qt.PointingHandCursor) + patch.set_edge(edge, 'red') + else: + patch.set_edge('', 'black') + + def onmotion(self, event: MouseEvent): + if event.inaxes not in self: + return + if self._selected is None: + self.highlight_edge(event.xdata) + event.canvas.draw() + else: + dx = event.xdata - self._select_loc + self._selected.move_patches(dx) + + def go_home(self): + """Autoscale the axes back to the data limits, and rescale patches.""" + for ax in self.all_axes: + ax.autoscale(True, 'both', False) + self.rescale_patches() + + def rescale_patches(self): + """Rescales all Patch Groups to fit their Axes y-limits""" + for pg in self.patches.values(): + pg.rescale_patches() + + def get_axes(self, index) -> (Axes, bool): + """ + Get an Axes object at the specified index, or a twin if the Axes at + the index already has a line plotted in it. + Boolean is returned with the Axes, specifying whether the returned + Axes is a Twin or not. + + Parameters + ---------- + index : int + Index of the Axes to retrieve. + + Returns + ------- + Tuple[Axes, bool]: + Axes object and boolean value + bool : False if Axes is the base (non-twin) Axes, + True if it is a twin + + """ + ax = self.axes[index] + if self.twins is not None and len(ax.lines): + return self.twins[index], True + return ax, False + + def add_patch(self, xdata, start=None, stop=None, uid=None, label=None) \ + -> Union['PatchGroup', None]: + """Add a flight line patch at the specified x-coordinate on all axes + When a user clicks on the plot, we want to place a rectangle, + centered on the mouse click x-location, and spanning across any + primary axes in the AxesGroup. + + Parameters + ---------- + xdata : int + X location on the Axes to add a new patch + start, stop : float, optional + If specified, draw a custom patch from saved data + uid : str, optional + If specified, assign the patch group a custom UID + label : str, optional + If specified, add the label text as an annotation on the created + patch group + + Returns + ------- + New Patch Group : PatchGroup + Returns newly created group of 'partnered' or linked Rectangle + Patches as a PatchGroup + If the PatchGroup is not created sucessfully (i.e. xdata was too + close to another patch) None is returned. + + """ + if start and stop: + # Reapply a saved patch from start and stop positions of the rect + x0 = date2num(start) + x1 = date2num(stop) + width = x1 - x0 + else: + xlim = self._ax0.get_xlim() # type: Tuple + width = (xlim[1] - xlim[0]) * np.float64(self.patch_pct) + x0 = xdata - width / 2 + + # Check if click is too close to existing patch groups + for group in self.patches.values(): + if group.contains(xdata, prox=.04): + raise ValueError("Flight patch too close to add") + + pg = PatchGroup(uid=uid, parent=self) + for i, ax in self.axes.items(): + ylim = ax.get_ylim() + height = abs(ylim[1]) + abs(ylim[0]) + rect = Rectangle((x0, ylim[0]), width, height*2, alpha=0.1, + picker=True, edgecolor='black', linewidth=2) + patch = ax.add_patch(rect) + ax.draw_artist(patch) + pg.add_patch(i, patch) + + if label is not None: + pg.set_label(label) + self.patches[pg.uid] = pg + return pg + + def remove_pg(self, pg: 'PatchGroup'): + del self.patches[pg.uid] + + +class PatchGroup: + """ + Contain related patches that are cloned across multiple sub-plots + """ + def __init__(self, label: str=None, uid=None, parent=None): + self.parent = parent # type: AxesGroup + if uid is not None: + self.uid = uid + else: + self.uid = gen_uuid('ptc') + self.label = label + self.modified = False + self.animated = False + + self._patches = {} # type: Dict[int, Rectangle] + self._p0 = None # type: Rectangle + self._labels = {} # type: Dict[int, Annotation] + self._bgs = {} + # Store x location on animation for delta movement + self._x0 = 0 + # Original width must be stored for stretch + self._width = 0 + self._stretching = None + + @property + def x(self): + if self._p0 is None: + return None + return self._p0.get_x() + + @property + def stretching(self): + return self._stretching + + @property + def width(self): + """Return the width of the patches in this group (all patches have + same width)""" + return self._p0.get_width() + + def hide(self): + for patch in self._patches.values(): + patch.set_visible(False) + for label in self._labels.values(): + label.set_visible(False) + + def show(self): + for patch in self._patches.values(): + patch.set_visible(True) + for label in self._labels.values(): + label.set_visible(True) + + def contains(self, xdata, prox=EDGE_PROX): + """Check if an x-coordinate is contained within the bounds of this + patch group, with an optional proximity modifier.""" + prox = self._scale_prox(prox) + x0 = self._p0.get_x() + width = self._p0.get_width() + return x0 - prox <= xdata <= x0 + width + prox + + def add_patch(self, plot_index: int, patch: Rectangle): + if not len(self._patches): + # Record attributes of first added patch for reference + self._p0 = patch + self._patches[plot_index] = patch + + def remove(self): + """Delete this patch group and associated labels from the axes's""" + self.unanimate() + for patch in self._patches.values(): + patch.remove() + for label in self._labels.values(): + label.remove() + self._p0 = None + if self.parent is not None: + self.parent.remove_pg(self) + + def start(self): + """Return the start x-location of this patch group as a Date Locator""" + for patch in self._patches.values(): + return num2date(patch.get_x()) + + def stop(self): + """Return the stop x-location of this patch group as a Data Locator""" + if self._p0 is None: + return None + return num2date(self._p0.get_x() + self._p0.get_width()) + + def get_edge(self, xdata, prox=EDGE_PROX, inner=False): + """Get the edge that the mouse is in proximity to, or None if it is + not.""" + left = self._p0.get_x() + right = left + self._p0.get_width() + prox = self._scale_prox(prox) + + if left - (prox * int(not inner)) <= xdata <= left + prox: + return 'left' + if right - prox <= xdata <= right + (prox * int(not inner)): + return 'right' + return None + + def set_edge(self, edge: str, color: str, select: bool=False): + """Set the given edge color, and set the Group stretching factor if + select""" + if edge not in {'left', 'right'}: + color = (0.0, 0.0, 0.0, 0.1) # black, 10% alpha + self._stretching = None + elif select: + _log.debug("Setting stretch to: {}".format(edge)) + self._stretching = edge + for patch in self._patches.values(): # type: Rectangle + if patch.get_edgecolor() != color: + patch.set_edgecolor(color) + patch.axes.draw_artist(patch) + else: + break + + def animate(self) -> None: + """ + Animate all artists contained in this PatchGroup, and record the x + location of the group. + Matplotlibs Artist.set_animated serves to remove the artists from the + canvas bbox, so that we can copy a rasterized bbox of the rest of the + canvas and then blit it back as we move or modify the animated artists. + This means that a complete redraw only has to be done for the + selected artists, not the entire canvas. + + """ + _log.debug("Animating patches") + if self._p0 is None: + raise AttributeError("No patches exist") + self._x0 = self._p0.get_x() + self._width = self._p0.get_width() + + for i, patch in self._patches.items(): # type: int, Rectangle + patch.set_animated(True) + try: + self._labels[i].set_animated(True) + except KeyError: + pass + canvas = patch.figure.canvas + # Need to draw the canvas once after animating to remove the + # animated patch from the bbox - but this introduces significant + # lag between the mouse click and the beginning of the animation. + # canvas.draw() + bg = canvas.copy_from_bbox(patch.axes.bbox) + self._bgs[i] = bg + canvas.restore_region(bg) + patch.axes.draw_artist(patch) + canvas.blit(patch.axes.bbox) + + self.animated = True + return + + def unanimate(self) -> None: + if not self.animated: + return + for patch in self._patches.values(): + patch.set_animated(False) + for label in self._labels.values(): + label.set_animated(False) + + self._bgs = {} + self._stretching = False + self.animated = False + return + + def set_label(self, label: str) -> None: + """ + Set the label on these patches. Centered vertically and horizontally. + + Parameters + ---------- + label : str + String to label the patch group with. + + """ + if label is None: + # Fixes a label being displayed as 'None' + label = '' + + self.label = label + + for i, patch in self._patches.items(): + px = patch.get_x() + patch.get_width() * 0.5 + ylims = patch.axes.get_ylim() + py = ylims[0] + abs(ylims[1] - ylims[0]) * 0.5 + + annotation = patch.axes.annotate(label, + xy=(px, py), + weight='bold', + fontsize=6, + ha='center', + va='center', + annotation_clip=False) + self._labels[i] = annotation + self.modified = True + + def move_patches(self, dx) -> None: + """ + Move or stretch patches by dx, action depending on activation + location i.e. when animate was called on the group. + + Parameters + ---------- + dx : float + Delta x, positive or negative float value to move or stretch the + group + + """ + if self._stretching is not None: + return self._stretch(dx) + for i in self._patches: + patch = self._patches[i] # type: Rectangle + patch.set_x(self._x0 + dx) + + canvas = patch.figure.canvas # type: FigureCanvas + canvas.restore_region(self._bgs[i]) + # Must draw_artist after restoring region, or they will be hidden + patch.axes.draw_artist(patch) + + cx, cy = self._patch_center(patch) + self._move_label(i, cx, cy) + + canvas.blit(patch.axes.bbox) + self.modified = True + + def rescale_patches(self) -> None: + """Adjust Height based on new axes limits""" + for i, patch in self._patches.items(): + ylims = patch.axes.get_ylim() + height = abs(ylims[1]) + abs(ylims[0]) + patch.set_y(ylims[0]) + patch.set_height(height) + patch.axes.draw_artist(patch) + self._move_label(i, *self._patch_center(patch)) + + def _stretch(self, dx) -> None: + if self._p0 is None: + return None + width = self._width + if self._stretching == 'left' and width - dx > 0: + for i, patch in self._patches.items(): + patch.set_x(self._x0 + dx) + patch.set_width(width - dx) + elif self._stretching == 'right' and width + dx > 0: + for i, patch in self._patches.items(): + patch.set_width(width + dx) + else: + return + + for i, patch in self._patches.items(): + axes = patch.axes + cx, cy = self._patch_center(patch) + canvas = patch.figure.canvas + canvas.restore_region(self._bgs[i]) + axes.draw_artist(patch) + self._move_label(i, cx, cy) + + canvas.blit(axes.bbox) + + self.modified = True + + def _move_label(self, index, x, y) -> None: + """ + Move labels in this group to new position x, y + + Parameters + ---------- + index : int + Axes index of the label to move + x, y : int + x, y location to move the label + + """ + label = self._labels.get(index, None) + if label is None: + return + label.set_position((x, y)) + label.axes.draw_artist(label) + + def _scale_prox(self, pct: float): + """ + Take a decimal percentage and return the apropriate Axes unit value + based on the x-axis limits of the current plot. + This ensures that methods using a proximity selection modifier behave + the same, independant of the x-axis scale or size. + + Parameters + ---------- + pct : float + Percent value expressed as float + + Returns + ------- + float + proximity value converted to Matplotlib Axes scale value + + """ + if self._p0 is None: + return 0 + x0, x1 = self._p0.axes.get_xlim() + return (x1 - x0) * pct + + @staticmethod + def _patch_center(patch) -> Tuple[int, int]: + """Utility method to calculate the horizontal and vertical center + point of the specified patch""" + cx = patch.get_x() + patch.get_width() * 0.5 + ylims = patch.axes.get_ylim() + cy = ylims[0] + abs(ylims[1] - ylims[0]) * 0.5 + return cx, cy + + class BasePlottingCanvas(FigureCanvas): """ - BasePlottingCanvas sets up the basic Qt Canvas parameters, and is designed - to be subclassed for different plot types. + BasePlottingCanvas sets up the basic Qt FigureCanvas parameters, and is + designed to be subclassed for different plot types. + Mouse events are connected to the canvas here, and the handlers should be + overriden in sub-classes to provide custom actions. """ def __init__(self, parent=None, width=8, height=4, dpi=100): - self.log = logging.getLogger(__name__) - self.log.info("Initializing BasePlottingCanvas") - self.parent = parent - fig = Figure(figsize=(width, height), dpi=dpi, tight_layout=True) - super().__init__(fig) - # FigureCanvas.__init__(self, fig) + _log.debug("Initializing BasePlottingCanvas") - self.setParent(parent) - FigureCanvas.setSizePolicy(self, QSizePolicy.Expanding, QSizePolicy.Expanding) - FigureCanvas.updateGeometry(self) + super().__init__(Figure(figsize=(width, height), + dpi=dpi, + tight_layout=True)) - self.axes = [] + self.setParent(parent) + super().setSizePolicy(QSizePolicy.Expanding, QSizePolicy.Expanding) + super().updateGeometry() self.figure.canvas.mpl_connect('button_press_event', self.onclick) self.figure.canvas.mpl_connect('button_release_event', self.onrelease) self.figure.canvas.mpl_connect('motion_notify_event', self.onmotion) self.figure.canvas.mpl_connect('pick_event', self.onpick) - def generate_subplots(self, rows: int) -> None: - """Generate vertically stacked subplots for comparing data""" - # TODO: Experimenting with generating multiple plots, work with Chris on this class - - # Clear any current axes first - self.axes = [] - for i in range(rows): - if i == 0: - sp = self.figure.add_subplot(rows, 1, i+1) # type: Axes - else: # Share x-axis with plot 0 - sp = self.figure.add_subplot(rows, 1, i + 1, sharex=self.axes[0]) # type: Axes - - sp.grid(True) - # sp.xaxis_date() - # sp.get_xaxis().set_major_formatter(DateFormatter('%H:%M:%S')) - sp.name = 'Axes {}'.format(i) - # sp.callbacks.connect('xlim_changed', set_x_formatter) - sp.callbacks.connect('ylim_changed', self._on_ylim_changed) - self.axes.append(sp) - i += 1 - - self.compute_initial_figure() - - def add_subplot(self): - pass - - def compute_initial_figure(self): - pass - - def clear(self): - pass - def onclick(self, event: MouseEvent): pass @@ -100,11 +660,7 @@ def onrelease(self, event: MouseEvent): def onmotion(self, event: MouseEvent): pass - def __len__(self): - return len(self.axes) - -ClickInfo = namedtuple('ClickInfo', ['partners', 'x0', 'width', 'xpos', 'ypos']) LineUpdate = namedtuple('LineUpdate', ['flight_id', 'action', 'uid', 'start', 'stop', 'label']) @@ -113,473 +669,449 @@ class LineGrabPlot(BasePlottingCanvas, QWidget): """ LineGrabPlot implements BasePlottingCanvas and provides an onclick method to select flight line segments. + + Attributes + ---------- + ax_grp : AxesGroup + + plotted : bool + Boolean flag - True if any axes have been plotted/drawn to + """ line_changed = pyqtSignal(LineUpdate) + resample = pyqtSignal(int) - def __init__(self, flight, n=1, fid=None, title=None, parent=None): + def __init__(self, flight: Flight, rows: int=1, title=None, parent=None): super().__init__(parent=parent) - self.setAcceptDrops(True) - self.log = logging.getLogger(__name__) - self.rects = [] - self.zooming = False - self.panning = False - self.clicked = None # type: ClickInfo - self.generate_subplots(n) + # Set initial sub-plot layout + self._plots = self.set_plots(rows=rows, sharex=True, resample=True) + self.ax_grp = AxesGroup(*self._plots.values(), twin=True, parent=self) + + # Experimental + self.setAcceptDrops(False) + # END Experimental self.plotted = False - self.timespan = datetime.timedelta(0) - self.resample = slice(None, None, 20) - self._lines = {} + self._zooming = False + self._panning = False self._flight = flight # type: Flight - self._flight_id = flight.uid - # Issue #36 - self._plot_lines = {} # {uid: (ax_idx, Line2d), ...} + # Resampling variables + self._series = {} # {uid: pandas.Series, ...} + self._xwidth = 0 + self._ratio = 100 + # Define resampling steps based on integer percent range + # TODO: Future: enable user to define custom ranges/steps + self._steps = { + range(0, 15): slice(None, None, 1), + range(15, 35): slice(None, None, 5), + range(35, 75): slice(None, None, 10), + range(75, 101): slice(None, None, 15) + } + + # Map of Line2D objects active in sub-plots, keyed by data UID + self._lines = {} # {uid: Line2D, ...} if title: self.figure.suptitle(title, y=1) else: self.figure.suptitle(flight.name, y=1) - self._stretching = None - self._is_near_edge = False - self._selected_patch = None - # create context menu self._pop_menu = QMenu(self) - self._pop_menu.addAction(QAction('Remove', self, - triggered=self._remove_patch)) + self._pop_menu.addAction( + QAction('Remove', self, triggered=self._remove_patch)) # self._pop_menu.addAction(QAction('Set Label', self, # triggered=self._label_patch)) - self._pop_menu.addAction(QAction('Set Label', self, - triggered=self._label_patch)) + self._pop_menu.addAction( + QAction('Set Label', self, triggered=self._label_patch)) - def update_plot(self): - raise NotImplementedError - flight_state = self._flight.get_plot_state() + def __len__(self): + return len(self._plots) - for channel in flight_state: - label, axes = flight_state[channel] - if channel not in self._plot_lines: - pass + @property + def axes(self): + return [ax for ax in self._plots.values()] - def _remove_patch(self, partners): - if self._selected_patch is not None: - partners = self._selected_patch - - uid = partners[0]['uid'] - start = partners[0]['left'] - stop = partners[0]['right'] - - # remove patches - while partners: - patch_group = partners.pop() - patch_group['rect'].remove() - if patch_group['label'] is not None: - patch_group['label'].remove() - self.rects.remove(partners) + def set_plots(self, rows: int, cols=1, sharex=True, resample=False): + """ + Sets the figure layout with a number of sub-figures and twin figures + as specified in the arguments. + The sharex and sharey params control the behavior of the sub-plots, + with sharex=True all plots will be linked together on the X-Axis + which is useful for showing/comparing linked data sets. + The sharey param in fact generates an extra sub-plot/Axes object for + each plot, overlayed on top of the original. This allows the plotting of + multiple data sets of different magnitudes on the same chart, + displaying a scale for each on the left and right edges. + + Parameters + ---------- + rows : int + Number plots to generate for display in a vertical stack + cols : int, optional + For now, cols will always be 1 (ignored param) + In future would like to enable dynamic layouts with multiple + columns as well as rows + sharex : bool, optional + Default True. All plots will share their X axis with each other. + resample : bool, optional + If true, enable dynamic resampling on each Axes, that is, + down-sample data when zoomed completely out, and reduce the + down-sampling as the data is viewed closer. + + Returns + ------- + Dict[int, Axes] + Mapping of axes index (int) to subplot (Axes) objects + + """ + self.figure.clf() + cols = 1 # Hardcoded to 1 until future implementation + plots = {} + + # Note: When adding subplots, the first index is 1 + for i in range(1, rows+1): + if sharex and i > 1: + plot = self.figure.add_subplot(rows, cols, i, sharex=plots[0]) + else: + plot = self.figure.add_subplot(rows, cols, i) # type: Axes + if resample: + plot.callbacks.connect('xlim_changed', self._xlim_resample) + plot.callbacks.connect('ylim_changed', self._on_ylim_changed) + + plot.grid(True) + plots[i-1] = plot + + return plots + + def _remove_patch(self): + """PyQtSlot: + Called by QAction menu item to remove the currently selected + PatchGroup""" + if self.ax_grp.active is not None: + pg = self.ax_grp.active + self.ax_grp.remove() + self.line_changed.emit( + LineUpdate(flight_id=self._flight.uid, + action='remove', + uid=pg.uid, + start=pg.start(), stop=pg.stop(), + label=None)) + self.ax_grp.deselect() self.draw() - self.line_changed.emit(LineUpdate(flight_id=self._flight_id, - action='remove', uid=uid, start=start, stop=stop, label=None)) - self._selected_patch = None - - def _label_patch(self, label): - if self._selected_patch is not None: - partners = self._selected_patch - current_label = partners[0]['label'] - if current_label is not None: - dialog = SetLineLabelDialog(current_label.get_text()) + return + + def _label_patch(self): + """PyQtSlot: + Called by QAction menu item to add a label to the currently selected + PatchGroup""" + if self.ax_grp.active is not None: + pg = self.ax_grp.active + if pg.label is not None: + dialog = SetLineLabelDialog(pg.label) else: dialog = SetLineLabelDialog(None) if dialog.exec_(): label = dialog.label_text else: return - else: + + pg.set_label(label) + update = LineUpdate(flight_id=self._flight.uid, action='modify', + uid=pg.uid, start=pg.start(), stop=pg.stop(), + label=pg.label) + self.line_changed.emit(update) + self.ax_grp.deselect() + self.draw() + return + + def _xlim_resample(self, axes: Axes) -> None: + """ + Called on change of x-limits of a given Axes. This method will + re-sample line data in every linked Axes based on the zoom level. + This is done for performance reasons, as with large data-sets + interacting with the plot can become very slow. + Re-sampling is done by slicing the data and selecting points at every + x steps, determined by the current ratio of the plot width to + original width. + Ratio ranges and steps are defined in the instance _steps dictionary. + + TODO: In future user should be able to override the re-sampling step + lookup and be able to dynamically turn off/on the resampling of data. + + """ + if self._panning: + return + if self._xwidth == 0: return - for p in partners: - rx = p['rect'].get_x() - cx = rx + p['rect'].get_width() * 0.5 - axes = p['rect'].axes - ylim = axes.get_ylim() - cy = ylim[0] + abs(ylim[1] - ylim[0]) * 0.5 - axes = p['rect'].axes - - if label is not None: - if p['label'] is not None: - p['label'].set_text(label) - else: - p['label'] = axes.annotate(label, - xy=(cx, cy), - weight='bold', - fontsize=6, - ha='center', - va='center', - annotation_clip=False) - else: - if p['label'] is not None: - p['label'].remove() - p['label'] = None + x0, x1 = axes.get_xlim() + ratio = int((x1 - x0) / self._xwidth * 100) + if ratio == self._ratio: + _log.debug("Resample ratio hasn't changed") + return + else: + self._ratio = ratio - self.draw() + for rs in self._steps: + if ratio in rs: + resample = self._steps[rs] + break + else: + resample = slice(None, None, 1) - def _move_patch_label(self, attr): - rx = attr['rect'].get_x() - cx = rx + attr['rect'].get_width() * 0.5 - axes = attr['rect'].axes - ylim = axes.get_ylim() - cy = ylim[0] + abs(ylim[1] - ylim[0]) * 0.5 - attr['label'].set_position((cx, cy)) + self.resample.emit(resample.step) + self._resample = resample - def draw(self): - self.plotted = True - # self.figure.canvas.draw() - super().draw() + for uid, line in self._lines.items(): # type: str, Line2D + series = self._series.get(uid) + sample = series[resample] + line.set_xdata(sample.index) + line.set_ydata(sample.values) + line.axes.draw_artist(line) - def clear(self): - self._lines = {} - self.rects = [] - self.resample = slice(None, None, 20) self.draw() - for ax in self.axes: # type: Axes - for line in ax.lines[:]: - ax.lines.remove(line) - for patch in ax.patches[:]: - patch.remove() - ax.relim() + + def _on_ylim_changed(self, changed: Axes) -> None: + if self._panning or self._zooming: + self.ax_grp.rescale_patches() + return + + def home(self, *args): + """Autoscale Axes in the ax_grp to fit all data, then draw.""" + self.ax_grp.go_home() self.draw() - def _set_formatters(self): - """ - Check for lines on plot and set formatters accordingly. - If there are no lines plotted we apply a NullLocator and NullFormatter - If there are lines plotted or about to be plotted, re-apply an - AutoLocator and DateFormatter. - """ - raise NotImplementedError("Method not yet implemented") + def add_patch(self, start, stop, uid, label=None): + if not self.plotted: + self.draw() + self.ax_grp.add_patch(0, start=start, stop=stop, uid=uid, label=label) + + def draw(self): + super().draw() + self.plotted = True # Issue #36 Enable data/channel selection and plotting def add_series(self, dc: types.DataChannel, axes_idx: int=0, draw=True): - """Add one or more data series to the specified axes as a line plot.""" - if len(self._plot_lines) == 0: + """ + Add a DataChannel (containing a pandas.Series) to the specified axes + at axes_idx. + If a data channel has already been plotted in the specified axes, + we will attempt to get the Twin axes to plot the next series, + enabling dual Y axis scales for the data. + + Parameters + ---------- + dc : types.DataChannel + DataChannel object to plot + axes_idx : int + Index of the axes objec to plot on. + draw : bool, optional + Optionally, set to False to defer drawing after plotting of the + DataChannel + + """ + if len(self._lines) == 0: # If there are 0 plot lines we need to reset the locator/formatter - self.log.debug("Adding locator and major formatter to empty plot.") + _log.debug("Adding locator and major formatter to empty plot.") self.axes[0].xaxis.set_major_locator(AutoLocator()) self.axes[0].xaxis.set_major_formatter(DateFormatter('%H:%M:%S')) - axes = self.axes[axes_idx] + axes, twin = self.ax_grp.get_axes(axes_idx) + + if twin: + color = 'orange' + else: + color = 'blue' + series = dc.series() - dc.plotted = axes_idx + dc.plot(axes_idx) line_artist = axes.plot(series.index, series.values, - label=dc.label)[0] + color=color, label=dc.label)[0] - self._plot_lines[dc.uid] = axes_idx, line_artist + # Set values for x-ratio resampling + x0, x1 = axes.get_xlim() + width = x1 - x0 + self._xwidth = max(self._xwidth, width) - self.log.info("Adding legend, relim and autoscaling on axes: {}" - .format(axes)) - axes.legend() - axes.relim() - axes.autoscale_view() + axes.tick_params('y', colors=color) + axes.set_ylabel(dc.label, color=color) + self._series[dc.uid] = series # Store reference to series for resample + self._lines[dc.uid] = line_artist + self.ax_grp.rescale_patches() if draw: self.figure.canvas.draw() - def update_series(self, line: types.DataChannel): - pass - def remove_series(self, dc: types.DataChannel): + """ + Remove a line series from the plot area. + If the channel cannot be located on any axes, None is returned + + Parameters + ---------- + dc : types.DataChannel + Reference of the DataChannel to remove from the plot + + Returns + ------- - if dc.uid not in self._plot_lines: - self.log.warning("Series UID could not be located in plot_lines") + """ + if dc.uid not in self._lines: + _log.warning("Series UID could not be located in plot_lines") return - axes_idx, line = self._plot_lines[dc.uid] - axes = self.axes[axes_idx] + line = self._lines[dc.uid] # type: Line2D + + axes = line.axes axes.lines.remove(line) - axes.relim() - axes.autoscale_view() - if not axes.lines: - axes.legend_.remove() - else: - axes.legend() - del self._plot_lines[dc.uid] - dc.plotted = -1 - if len(self._plot_lines) == 0: - self.log.warning("No lines on plotter axes.") - - line_count = reduce(lambda acc, res: acc + res, - (len(x.lines) for x in self.axes)) - if not line_count: - self.log.warning("No Lines on any axes.") - print(self.axes[0].xaxis.get_major_locator()) + axes.tick_params('y', colors='black') + axes.set_ylabel('') + + self.ax_grp.rescale_patches() + del self._lines[dc.uid] + del self._series[dc.uid] + dc.plot(None) + + if not len(self._lines): + _log.warning("No Lines on any axes.") self.axes[0].xaxis.set_major_locator(NullLocator()) self.axes[0].xaxis.set_major_formatter(NullFormatter()) - self.figure.canvas.draw() + self.draw() def get_series_by_label(self, label: str): pass - # TODO: Clean this up, allow direct passing of FlightLine Objects - # Also convert this/test this to be used in onclick to create lines - def draw_patch(self, start, stop, uid): - caxes = self.axes[0] - ylim = caxes.get_ylim() # type: Tuple - xstart = date2num(start) - xstop = date2num(stop) - width = xstop - xstart - height = ylim[1] - ylim[0] - c_rect = Rectangle((xstart, ylim[0]), width, height, alpha=0.2) - - caxes.add_patch(c_rect) - caxes.draw_artist(caxes.patch) - - left = num2date(c_rect.get_x()) - right = num2date(c_rect.get_x() + c_rect.get_width()) - partners = [{'uid': uid, 'rect': c_rect, 'bg': None, 'left': left, 'right': right, 'label': None}] - - for ax in self.axes: - if ax == caxes: - continue - ylim = ax.get_ylim() - height = ylim[1] - ylim[0] - a_rect = Rectangle((xstart, ylim[0]), width, height, alpha=0.1, picker=True) - ax.add_patch(a_rect) - ax.draw_artist(ax.patch) - left = num2date(a_rect.get_x()) - right = num2date(a_rect.get_x() + a_rect.get_width()) - partners.append({'uid': uid, 'rect': a_rect, 'bg': None, 'left': left, - 'right': right, 'label': None}) - - self.rects.append(partners) - - self.figure.canvas.draw() - self.draw() - return - - # Testing: Maybe way to optimize rectangle selection/dragging code - def onpick(self, event: PickEvent): - # Pick needs to be enabled for artist ( picker=True ) - # event.artist references the artist that triggered the pick - self.log.debug("Picked artist: {artist}".format(artist=event.artist)) - def onclick(self, event: MouseEvent): - # TODO: What happens when a patch is added before a new plot is added? - if not self.plotted: + if self._zooming or self._panning: + # Possibly hide all artists here to speed up panning + # for line in self._lines.values(): # type: Line2D + # line.set_visible(False) return - lines = 0 - for ax in self.axes: - lines += len(ax.lines) - if lines <= 0: + if not self.plotted or not len(self._lines): + # If there is nothing plotted, don't allow user click interaction return - - if self.zooming or self.panning: # Don't do anything when zooming/panning is enabled + # If the event didn't occur within an Axes, ignore it + if event.inaxes not in self.ax_grp: return - # Check that the click event happened within one of the subplot axes - if event.inaxes not in self.axes: - return - self.log.info("Xdata: {}".format(event.xdata)) + # Else, process the click event + _log.debug("Axes Click @ xdata: {}".format(event.xdata)) - caxes = event.inaxes # type: Axes - other_axes = [ax for ax in self.axes if ax != caxes] - # print("Current axes: {}\nOther axes obj: {}".format(repr(caxes), other_axes)) + active = self.ax_grp.select(event.xdata, inner=False) - if event.button == 3: - # Right click - for partners in self.rects: - for p in partners: - patch = p['rect'] - hit, _ = patch.contains(event) - if hit: - cursor = QCursor() - self._selected_patch = partners - self._pop_menu.popup(cursor.pos()) - return - - else: - # Left click - for partners in self.rects: - patch = partners[0]['rect'] - if patch.get_x() <= event.xdata <= patch.get_x() + patch.get_width(): - # Then we clicked an existing rectangle - x0, _ = patch.xy - width = patch.get_width() - self.clicked = ClickInfo(partners, x0, width, event.xdata, event.ydata) - self._stretching = self._is_near_edge - - for attrs in partners: - rect = attrs['rect'] - rect.set_animated(True) - label = attrs['label'] - if label is not None: - label.set_animated(True) - r_canvas = rect.figure.canvas - r_axes = rect.axes # type: Axes - r_canvas.draw() - attrs['bg'] = r_canvas.copy_from_bbox(r_axes.bbox) - return - - # else: Create a new rectangle on all axes - # TODO: Use the new draw_patch function to do this (some modifications required) - ylim = caxes.get_ylim() # type: Tuple - xlim = caxes.get_xlim() # type: Tuple - width = (xlim[1] - xlim[0]) * np.float64(0.05) - # print("Width 5%: ", width) - # Get the bottom left corner of the rectangle which will be centered at the mouse click - x0 = event.xdata - width / 2 - y0 = ylim[0] - height = ylim[1] - ylim[0] - c_rect = Rectangle((x0, y0), width, height*2, alpha=0.1, picker=True) - - # Experimental replacement: - # self.draw_patch(num2date(x0), num2date(x0+width), uid=gen_uuid('ln')) - caxes.add_patch(c_rect) - caxes.draw_artist(caxes.patch) - - uid = gen_uuid('ln') - left = num2date(c_rect.get_x()) - right = num2date(c_rect.get_x() + c_rect.get_width()) - partners = [{'uid': uid, 'rect': c_rect, 'bg': None, 'left': left, 'right': right, 'label': None}] - for ax in other_axes: - x0 = event.xdata - width / 2 - ylim = ax.get_ylim() - y0 = ylim[0] - height = ylim[1] - ylim[0] - a_rect = Rectangle((x0, y0), width, height * 2, alpha=0.1) - ax.add_patch(a_rect) - ax.draw_artist(ax.patch) - left = num2date(a_rect.get_x()) - right = num2date(a_rect.get_x() + a_rect.get_width()) - partners.append({'uid': uid, 'rect': a_rect, 'bg': None, 'left': left, - 'right': right, 'label': None}) - - self.rects.append(partners) - - if self._flight_id is not None: - self.line_changed.emit(LineUpdate(flight_id=self._flight_id, - action='add', uid=uid, start=left, stop=right, label=None)) - - self.figure.canvas.draw() + if not active: + _log.info("No patch at location: {}".format(event.xdata)) + if event.button == 3: + # Right Click + if not active: + return + cursor = QCursor() + self._pop_menu.popup(cursor.pos()) return - def toggle_zoom(self): - if self.panning: - self.panning = False - self.zooming = not self.zooming + elif event.button == 1: + if active: + # We've selected and activated an existing group + return + # Else: Create a new PatchGroup + _log.info("Creating new patch group at: {}".format(event.xdata)) - def toggle_pan(self): - if self.zooming: - self.zooming = False - self.panning = not self.panning - - def _move_rect(self, event): - partners, x0, width, xclick, yclick = self.clicked - - dx = event.xdata - xclick - for attr in partners: - rect = attr['rect'] - label = attr['label'] - if self._stretching is not None: - if self._stretching == 'left': - if width - dx > 0: - rect.set_x(x0 + dx) - rect.set_width(width - dx) - elif self._stretching == 'right': - if width + dx > 0: - rect.set_width(width + dx) + try: + pg = self.ax_grp.add_patch(event.xdata) + except ValueError: + _log.warning("Failed to create patch, too close to another?") + return else: - rect.set_x(x0 + dx) - - if attr['label'] is not None: - self._move_patch_label(attr) - - canvas = rect.figure.canvas - axes = rect.axes - canvas.restore_region(attr['bg']) - axes.draw_artist(rect) - if attr['label'] is not None: - axes.draw_artist(label) - canvas.blit(axes.bbox) + _log.info("Created new PatchGroup, uid: {}".format(pg.uid)) + self.draw() + + if self._flight.uid is not None: + self.line_changed.emit( + LineUpdate(flight_id=self._flight.uid, + action='add', + uid=pg.uid, + start=pg.start(), + stop=pg.stop(), + label=None)) + return + else: + # Middle Click + # _log.debug("Middle click is not supported.") + return - def _near_edge(self, event, prox=0.0005): - for partners in self.rects: - attr = partners[0] - rect = attr['rect'] + def onmotion(self, event: MouseEvent) -> None: + """ + Event Handler: Pass any motion events to the AxesGroup to handle, + as long as the user is not Panning or Zooming. - axes = rect.axes - canvas = rect.figure.canvas + Parameters + ---------- + event : MouseEvent + Matplotlib MouseEvent object with event parameters - left = rect.get_x() - right = left + rect.get_width() + Returns + ------- + None - if (event.xdata > left and event.xdata < left + prox): - for p in partners: - p['rect'].set_edgecolor('red') - p['rect'].set_linewidth(3) - event.canvas.draw() - return 'left' + """ + if self._zooming or self._panning: + return + return self.ax_grp.onmotion(event) - elif (event.xdata < right and event.xdata > right - prox): - for p in partners: - p['rect'].set_edgecolor('red') - p['rect'].set_linewidth(3) - event.canvas.draw() - return 'right' + def onrelease(self, event: MouseEvent) -> None: + """ + Event Handler: Process event and emit any changes made to the active + Patch group (if any) upon mouse release. - else: - if rect.get_linewidth() != 1.0 and self._stretching is None: - for p in partners: - p['rect'].set_edgecolor(None) - p['rect'].set_linewidth(None) - event.canvas.draw() + Parameters + ---------- + event : MouseEvent + Matplotlib MouseEvent object with event parameters - return None + Returns + ------- + None - def onmotion(self, event: MouseEvent): - if event.inaxes not in self.axes: + """ + if self._zooming or self._panning: + # for line in self._lines.values(): # type: Line2D + # line.set_visible(True) + self.ax_grp.rescale_patches() + self.draw() return + if self.ax_grp.active is not None: + pg = self.ax_grp.active # type: PatchGroup + if pg.modified: + self.line_changed.emit( + LineUpdate(flight_id=self._flight.uid, + action='modify', + uid=pg.uid, + start=pg.start(), + stop=pg.stop(), + label=pg.label)) + pg.modified = False + self.ax_grp.deselect() + # self.ax_grp.active = None - if self.clicked is not None: - self._move_rect(event) - else: - self._is_near_edge = self._near_edge(event) - - def onrelease(self, event: MouseEvent): - - if self.clicked is None: - if self._selected_patch is not None: - self._selected_patch = None - return # Nothing Selected - - partners = self.clicked.partners - for attrs in partners: - rect = attrs['rect'] - rect.set_animated(False) - label = attrs['label'] - if label is not None: - label.set_animated(False) - rect.axes.draw_artist(rect) - attrs['bg'] = None - - uid = partners[0]['uid'] - first_rect = partners[0]['rect'] - start = num2date(first_rect.get_x()) - stop = num2date(first_rect.get_x() + first_rect.get_width()) - label = partners[0]['label'] - - if self._flight_id is not None: - self.line_changed.emit(LineUpdate(flight_id=self._flight_id, - action='modify', uid=uid, start=start, stop=stop, label=label)) - - self.clicked = None + self.figure.canvas.draw() - if self._stretching is not None: - self._stretching = None + def toggle_zoom(self): + """Toggle plot zoom state, and disable panning state.""" + if self._panning: + self._panning = False + self._zooming = not self._zooming - self.figure.canvas.draw() + def toggle_pan(self): + """Toggle plot panning state, and disable zooming state.""" + if self._zooming: + self._zooming = False + self._panning = not self._panning + # EXPERIMENTAL Drag-n-Drop handlers + # Future feature to enable dropping of Channels directly onto the plot. def dragEnterEvent(self, event: QDragEnterEvent): print("Drag entered widget") event.acceptProposedAction() @@ -596,104 +1128,41 @@ def dropEvent(self, event: QDropEvent): mime = event.mimeData() # type: QMimeData print(mime) print(mime.text()) - - @staticmethod - def get_time_delta(x0, x1): - """Return a time delta from a plot axis limit""" - return num2date(x1) - num2date(x0) - - def _on_ylim_changed(self, changed: Axes): - for partners in self.rects: - for attr in partners: - if attr['rect'].axes == changed: - # reset rectangle sizes - ylim = changed.get_ylim() - attr['rect'].set_y(ylim[0]) - attr['rect'].set_height(abs(ylim[1] - ylim[0])) - - if attr['label'] is not None: - # reset label positions - self._move_patch_label(attr) - - def _on_xlim_changed(self, changed: Axes) -> None: - """ - When the xlim changes (width of the graph), we want to apply a decimation algorithm to the - dataset to speed up the visual performance of the graph. So when the graph is zoomed out - we will plot only one in 20 data points, and as the graph is zoomed we will lower the decimation - factor to zero. - Parameters - ---------- - changed - - Returns - ------- - None - """ - self.log.info("XLIM Changed!") - delta = self.get_time_delta(*changed.get_xlim()) - if self.timespan: - ratio = delta/self.timespan * 100 - else: - ratio = 100 - - if 50 < ratio: - resample = slice(None, None, 20) - elif 10 < ratio <= 50: - resample = slice(None, None, 10) - else: - resample = slice(None, None, None) - if resample == self.resample: - return - - self.resample = resample - - # Update line data using new resample rate - for ax in self.axes: - if self._lines.get(id(ax), None) is not None: - # print(self._lines[id(ax)]) - for line, series in self._lines[id(ax)]: - r_series = series[self.resample] - line[0].set_ydata(r_series.values) - line[0].set_xdata(r_series.index) - ax.draw_artist(line[0]) - self.log.debug("Resampling to: {}".format(self.resample)) - ax.relim() - ax.get_xaxis().set_major_formatter(DateFormatter('%H:%M:%S')) - self.figure.canvas.draw() + # END EXPERIMENTAL Drag-n-Drop def get_toolbar(self, parent=None) -> QToolBar: """ - Get a Matplotlib Toolbar for the current plot instance, and set toolbar actions (pan/zoom) specific to this plot - toolbar.actions() supports indexing, with the following default buttons at the specified index: - 1: Home - 2: Back - 3: Forward - 4: Pan - 5: Zoom - 6: Configure Sub-plots - 7: Edit axis, curve etc.. - 8: Save the figure + Get a Matplotlib Toolbar for the current plot instance, and set toolbar + actions (pan/zoom) specific to this plot. + We also override the home action (first by monkey-patching the + declaration in the NavigationToolbar class) as the MPL View stack method + provides inconsistent results with our code. + + toolbar.actions() supports indexing, with the following default + buttons at the specified index: + + 0: Home + 1: Back + 2: Forward + 4: Pan + 5: Zoom + 6: Configure Sub-plots + 7: Edit axis, curve etc.. + 8: Save the figure Parameters ---------- - [parent] + parent : QtWidget, optional Optional Qt Parent for this object Returns ------- - QtWidgets.QToolBar : Matplotlib Qt Toolbar used to control this plot instance + QtWidgets.QToolBar + Matplotlib Qt Toolbar used to control this plot instance """ toolbar = NavigationToolbar(self, parent=parent) + + toolbar.actions()[0].triggered.connect(self.home) toolbar.actions()[4].triggered.connect(self.toggle_pan) toolbar.actions()[5].triggered.connect(self.toggle_zoom) return toolbar - - def __getitem__(self, index): - return self.axes[index] - - def __iter__(self): - for axes in self.axes: - yield axes - - def __len__(self): - return len(self.axes) diff --git a/dgp/lib/project.py b/dgp/lib/project.py index 83ea67d..670a04d 100644 --- a/dgp/lib/project.py +++ b/dgp/lib/project.py @@ -338,16 +338,16 @@ def lines(self): return self._lines @property - def channels(self): + def channels(self) -> list: """Return data channels as list of DataChannel objects""" - cns = [] + rv = [] for source in self._data: # type: types.DataSource - cns.extend(source.channels) - return cns + rv.extend(source.get_channels()) + return rv def get_plot_state(self): # Return List[DataChannel if DataChannel is plotted] - return [dc for dc in self.channels if dc.plotted != -1] + return [dc for dc in self.channels if dc.plotted] def register_data(self, datasrc: types.DataSource): """Register a data file for use by this Flight""" diff --git a/dgp/lib/types.py b/dgp/lib/types.py index f2c508e..6acec7d 100644 --- a/dgp/lib/types.py +++ b/dgp/lib/types.py @@ -2,9 +2,9 @@ from abc import ABCMeta, abstractmethod from collections import namedtuple -from typing import Union, Generator +from typing import Union, Generator, List -from pandas import Series +from pandas import Series, DataFrame from dgp.lib.etc import gen_uuid from dgp.gui.qtenum import QtItemFlags, QtDataRoles @@ -130,6 +130,10 @@ def parent(self) -> Union[AbstractTreeItem, None]: def parent(self, value: AbstractTreeItem): """Sets the parent of this object.""" if value is None: + # try: + # self._parent.remove_child(self) + # except ValueError: + # print("Couldn't reove self from parent") self._parent = None return assert isinstance(value, AbstractTreeItem) @@ -181,13 +185,14 @@ def remove_child(self, child: Union[AbstractTreeItem, str]): # Allow children to be removed by UID if isinstance(child, str): child = self._child_map[child] - if child not in self._children: + return False raise ValueError("Child does not exist for this parent") - # child.parent = None + child.parent = None del self._child_map[child.uid] self._children.remove(child) self.update() + return True def insert_child(self, child: AbstractTreeItem, index: int) -> bool: if index == -1: @@ -208,7 +213,7 @@ def column_count(self): column Tree structure.""" return 1 - def indexof(self, child) -> Union[int, None]: + def indexof(self, child) -> int: """Return the index of a child contained in this object""" try: return self._children.index(child) @@ -304,25 +309,26 @@ def data(self, role: QtDataRoles): return None -class TreeLabelItem(BaseTreeItem): +class ChannelListHeader(BaseTreeItem): """ A simple Tree Item with a label, to be used as a header/label. This TreeItem accepts children. """ - def __init__(self, label: str, supports_drop=False, max_children=None, - parent=None): - super().__init__(uid=gen_uuid('ti'), parent=parent) - self.label = label + def __init__(self, index: int=-1, ctype='Available', supports_drop=True, + max_children=None, parent=None): + super().__init__(uid=gen_uuid('clh_'), parent=parent) + self.label = '{ctype} #{index}'.format(ctype=ctype, index=index) + self.index = index self._supports_drop = supports_drop - self._max_children = max_children + self.max_children = max_children @property def droppable(self): if not self._supports_drop: return False - if self._max_children is None: + if self.max_children is None: return True - if self.child_count() >= self._max_children: + if self.child_count() >= self.max_children: return False return True @@ -331,6 +337,9 @@ def data(self, role: QtDataRoles): return self.label return None + def remove_child(self, child: Union[AbstractTreeItem, str]): + super().remove_child(child) + class FlightLine(TreeItem): """ @@ -399,18 +408,62 @@ def __str__(self): class DataSource(BaseTreeItem): - def __init__(self, uid, filename, fields, dtype): + """ + The DataSource object is designed to hold a reference to a given UID/File + that has been imported and stored by the Data Manager. + This object provides a method load() that enables the caller to retrieve + the data pointed to by this object from the Data Manager. + + As DataSource is derived from BaseTreeItem, it supports being displayed + in a QTreeView via an AbstractItemModel derived class. + + Attributes + ---------- + filename : str + Record of the canonical path of the original data file. + fields : list(str) + List containing names of the fields (columns) available from the + source data. + dtype : str + Data type (i.e. GPS/Gravity) of the data pointed to by this object. + + """ + def __init__(self, uid, filename: str, fields: List[str], dtype: str): """Create a DataSource item with UID matching the managed file UID that it points to.""" super().__init__(uid) self.filename = filename self.fields = fields self.dtype = dtype - self.channels = [DataChannel(field, self) for field in - fields] - def load(self, field): - return dm.get_manager().load_data(self.uid)[field] + def get_channels(self) -> List['DataChannel']: + """ + Create a new list of DataChannels. + + Notes + ----- + The reason we construct a new list of new DataChannels instances is + due the probability of the DataChannels being used in multiple + models. + + If we returned instead a reference to previously created instances, + we would unpredictable behavior when their state or parent is modified. + + Returns + ------- + channels : List[DataChannel] + List of DataChannels constructed from fields available to this + DataSource. + + """ + return [DataChannel(field, self) for field in self.fields] + + def load(self, field=None) -> Union[Series, DataFrame]: + """Load data from the DataManager and return the specified field.""" + data = dm.get_manager().load_data(self.uid) + if field is not None: + return data[field] + return data def data(self, role: QtDataRoles): if role == QtDataRoles.DisplayRole: @@ -430,17 +483,36 @@ def __init__(self, label, source: DataSource, parent=None): self.field = label self._source = source self.plot_style = '' - self._plot_axes = -1 + self.units = '' + self._plotted = False + self._index = -1 @property def plotted(self): - return self._plot_axes + return self._plotted - @plotted.setter - def plotted(self, value): - self._plot_axes = value + @property + def index(self): + if not self._plotted: + return -1 + return self._index + + def plot(self, index: Union[int, None]) -> None: + if index is None: + self._plotted = False + self._index = -1 + else: + self._index = index + self._plotted = True def series(self, force=False) -> Series: + """Return the pandas Series referenced by this DataChannel + Parameters + ---------- + force : bool, optional + Reserved for future use, force the DataManager to reload the + Series from disk. + """ return self._source.load(self.field) def data(self, role: QtDataRoles): @@ -454,3 +526,14 @@ def flags(self): return super().flags() | QtItemFlags.ItemIsDragEnabled | \ QtItemFlags.ItemIsDropEnabled + def orphan(self): + """Remove the current object from its parents' list of children.""" + if self.parent is None: + return True + try: + parent = self.parent + res = parent.remove_child(self) + return res + except ValueError: + return False + diff --git a/examples/plot_example.py b/examples/plot_example.py index 3aa75a9..82a5a23 100644 --- a/examples/plot_example.py +++ b/examples/plot_example.py @@ -1,13 +1,63 @@ import os import sys -sys.path.insert(0, os.path.abspath(os.path.join(os.path.dirname(__file__), '..'))) -# import dgp +import uuid +import logging +import datetime +# sys.path.insert(0, os.path.abspath(os.path.join(os.path.dirname(__file__), +# '../dgp'))) -from dgp.gui import plotting as plots -from dgp.lib import gravity_ingestor as gi +import PyQt5.QtWidgets as QtWidgets +import PyQt5.Qt as Qt + +import numpy as np +from pandas import Series, DatetimeIndex + +os.chdir('..') +import dgp.lib.project as project +import dgp.lib.plotter as plotter + + +class MockDataChannel: + def __init__(self, series, label): + self._series = series + self.label = label + self.uid = uuid.uuid4().__str__() + + def series(self): + return self._series + + def plot(self, *args): + pass + + +class PlotExample(QtWidgets.QMainWindow): + def __init__(self): + super().__init__() + self.setWindowTitle('Plotter Testing') + self.setBaseSize(Qt.QSize(600, 600)) + self._flight = project.Flight(None, 'test') + self.plot = plotter.LineGrabPlot(self._flight, 2) + self.setCentralWidget(self.plot) + # toolbar = self.plot.get_toolbar(self) + self.show() + + def plot_sin(self): + idx = DatetimeIndex(freq='1S', start=datetime.datetime.now(), + periods=1000) + ser = Series([np.sin(x) for x in np.arange(0, 100, 0.1)], index=idx) + dc = MockDataChannel(ser, 'SinPlot') + dc2 = MockDataChannel(-ser, '-SinPlot') + self.plot.add_series(dc) + self.plot.add_series(dc2) + + +if __name__ == '__main__': + app = QtWidgets.QApplication(sys.argv) + _log = logging.getLogger() + _log.addHandler(logging.StreamHandler(sys.stdout)) + _log.setLevel(logging.DEBUG) + + window = PlotExample() + window.plot_sin() + sys.exit(app.exec_()) -os.chdir('../tests') -df = gi.read_at1m(os.path.abspath('./test_data.csv')) -plt = plots.Plots() -plt.generate_subplots(df.index, df['gravity'], df['pressure'], df['temp']) -# plt.generate_subplots(df.index, df['gravity']) From 9a66ea3567aa14229d46ff41ec1c35d7dad4e0b3 Mon Sep 17 00:00:00 2001 From: bradyzp Date: Fri, 22 Dec 2017 05:38:43 -0700 Subject: [PATCH 031/236] CLN: Refactored TreeItem code and lookup by UID Simplified TreeItem and removed some duplicate/unneeded class parameters. Implemented new get_child method to search for child by UID, instead of allowing child() to accept either an Int index or str UID. --- dgp/gui/widgets.py | 2 +- dgp/lib/project.py | 79 ++++++++++++++++++++++++---------------------- dgp/lib/types.py | 54 +++++++++++++++++-------------- 3 files changed, 73 insertions(+), 62 deletions(-) diff --git a/dgp/gui/widgets.py b/dgp/gui/widgets.py index 0e1d337..b78f052 100644 --- a/dgp/gui/widgets.py +++ b/dgp/gui/widgets.py @@ -113,7 +113,7 @@ def _on_modified_line(self, info: LineUpdate): flight = self._flight if info.uid in [x.uid for x in flight.lines]: if info.action == 'modify': - line = flight.lines[info.uid] + line = flight.lines.get_child(info.uid) line.start = info.start line.stop = info.stop line.label = info.label diff --git a/dgp/lib/project.py b/dgp/lib/project.py index 670a04d..237d1d7 100644 --- a/dgp/lib/project.py +++ b/dgp/lib/project.py @@ -54,6 +54,8 @@ """ +_log = logging.getLogger(__name__) + def can_pickle(attribute): """Helper function used by __getstate__ to determine if an attribute @@ -90,7 +92,6 @@ def __init__(self, path: pathlib.Path, name: str="Untitled Project", """ super().__init__(gen_uuid('prj'), parent=None) self._model_parent = model_parent - self.log = logging.getLogger(__name__) if isinstance(path, pathlib.Path): self.projectdir = path # type: pathlib.Path else: @@ -109,7 +110,7 @@ def __init__(self, path: pathlib.Path, name: str="Untitled Project", # Store MeterConfig objects in dictionary keyed by the meter name self._sensors = {} - self.log.debug("Gravity Project Initialized.") + _log.debug("Gravity Project Initialized.") def data(self, role: QtDataRoles): if role == QtDataRoles.DisplayRole: @@ -252,7 +253,6 @@ def __setstate__(self, state) -> None: None """ self.__dict__.update(state) - self.log = logging.getLogger(__name__) dm.init(self.projectdir.joinpath('data')) @@ -298,7 +298,6 @@ def __init__(self, project: GravityProject, name: str, date : datetime.date Datetime object to assign to this flight. """ - self.log = logging.getLogger(__name__) uid = kwargs.get('uuid', gen_uuid('flt')) super().__init__(uid, parent=None) @@ -319,12 +318,14 @@ def __init__(self, project: GravityProject, name: str, # Issue #36 Plotting data channels self._default_plot_map = {'gravity': 0, 'long': 1, 'cross': 1} - self._lines = Container(ctype=types.FlightLine, parent=self, - name='Flight Lines') - self._data = Container(ctype=types.DataSource, parent=self, - name='Data Files') - self.append_child(self._lines) - self.append_child(self._data) + self._lines_uid = self.append_child(Container(ctype=types.FlightLine, + parent=self, + name='Flight Lines')) + self._data_uid = self.append_child(Container(ctype=types.DataSource, + parent=self, + name='Data Files')) + # self.append_child(self._lines) + # self.append_child(self._data) def data(self, role): if role == QtDataRoles.ToolTipRole: @@ -335,13 +336,14 @@ def data(self, role): @property def lines(self): - return self._lines + return self.get_child(self._lines_uid) + # return self._lines @property def channels(self) -> list: """Return data channels as list of DataChannel objects""" rv = [] - for source in self._data: # type: types.DataSource + for source in self.get_child(self._data_uid): # type: types.DataSource rv.extend(source.get_channels()) return rv @@ -351,24 +353,27 @@ def get_plot_state(self): def register_data(self, datasrc: types.DataSource): """Register a data file for use by this Flight""" - self.log.info("Flight {} registering data source: {} UID: {}".format( + _log.info("Flight {} registering data source: {} UID: {}".format( self.name, datasrc.filename, datasrc.uid)) - self._data.append_child(datasrc) + self.get_child(self._data_uid).append_child(datasrc) + # self._data.append_child(datasrc) # TODO: Set channels within source to plotted if in default plot dict def add_line(self, start: datetime, stop: datetime, uid=None): """Add a flight line to the flight by start/stop index and sequence number""" - self.log.debug( - "Adding line to LineContainer of flight: {}".format(self.name)) - line = types.FlightLine(start, stop, len(self._lines) + 1, None, - uid=uid, parent=self.lines) - self._lines.append_child(line) + _log.debug("Adding line to Flight: {}".format(self.name)) + lines = self.get_child(self._lines_uid) + line = types.FlightLine(start, stop, len(lines) + 1, None, + uid=uid, parent=lines) + lines.append_child(line) return line def remove_line(self, uid): """ Remove a flight line """ - self._lines.remove_child(self._lines[uid]) + lines = self.get_child(self._lines_uid) + child = lines.get_child(uid) + lines.remove_child(child) def clear_lines(self): """Removes all Lines from Flight""" @@ -382,11 +387,11 @@ def __iter__(self): FlightLine : NamedTuple Next FlightLine in Flight.lines """ - for line in self._lines: + for line in self.get_child(self._lines_uid): yield line def __len__(self): - return len(self._lines) + return len(self.get_child(self._lines_uid)) def __repr__(self): return "{cls}({parent}, {name}, {meter})".format( @@ -402,7 +407,6 @@ def __getstate__(self): def __setstate__(self, state): self.__dict__.update(state) - self.log = logging.getLogger(__name__) self._gravdata = None self._gpsdata = None @@ -489,6 +493,9 @@ def append_child(self, child) -> None: def __str__(self): return str(self._children) + def __repr__(self): + return ''.format(self.ctype, self.uid) + class AirborneProject(GravityProject): """ @@ -496,8 +503,6 @@ class AirborneProject(GravityProject): Airborne survey project with parameters unique to airborne operations, and defining flight lines etc. - This class is iterable, yielding the Flight objects contained within its - flights dictionary """ def __iter__(self): @@ -506,14 +511,14 @@ def __iter__(self): def __init__(self, path: pathlib.Path, name, description=None, parent=None): super().__init__(path, name, description) - self._flights = Container(ctype=Flight, name="Flights", parent=self) - self.append_child(self._flights) - self._meters = Container(ctype=MeterConfig, name="Meter Configurations", - parent=self) - self.append_child(self._meters) + self._flight_uid = self.append_child(Container(ctype=Flight, + name="Flights", + parent=self)) + self._meter_uid = self.append_child(Container(ctype=MeterConfig, + name="Meter Configs", + parent=self)) - self.log.debug("Airborne project initialized") - self.data_map = {} + _log.debug("Airborne project initialized") def data(self, role: QtDataRoles): if role == QtDataRoles.DisplayRole: @@ -528,19 +533,19 @@ def update(self, **kwargs): def add_flight(self, flight: Flight) -> None: flight.parent = self - self._flights.append_child(flight) + self.get_child(self._flight_uid).append_child(flight) def remove_flight(self, flight: Flight): - self._flights.remove_child(flight) + self.get_child(self._flight_uid).remove_child(flight) def get_flight(self, uid): - return self._flights.child(uid) + return self.get_child(self._flight_uid).child(uid) @property def count_flights(self): - return len(self._flights) + return len(self.get_child(self._flight_uid)) @property def flights(self): - for flight in self._flights: + for flight in self.get_child(self._flight_uid): yield flight diff --git a/dgp/lib/types.py b/dgp/lib/types.py index 6acec7d..9cff935 100644 --- a/dgp/lib/types.py +++ b/dgp/lib/types.py @@ -1,5 +1,6 @@ # coding: utf-8 +import json from abc import ABCMeta, abstractmethod from collections import namedtuple from typing import Union, Generator, List @@ -112,7 +113,7 @@ def __init__(self, uid, parent: AbstractTreeItem=None): self._uid = uid self._parent = parent self._children = [] - self._child_map = {} # Used for fast lookup by UID + # self._child_map = {} # Used for fast lookup by UID if parent is not None: parent.append_child(self) @@ -149,47 +150,52 @@ def children(self) -> Generator[AbstractTreeItem, None, None]: def data(self, role: QtDataRoles): raise NotImplementedError("data(role) must be implemented in subclass.") - def child(self, index: Union[int, str]): - if isinstance(index, str): - return self._child_map[index] + def child(self, index: int) -> AbstractTreeItem: return self._children[index] - def append_child(self, child: AbstractTreeItem) -> None: + def get_child(self, uid: str) -> 'BaseTreeItem': + """Get a child by UID reference.""" + for child in self._children: + if child.uid == uid: + return child + + def append_child(self, child: AbstractTreeItem) -> str: """ Appends a child AbstractTreeItem to this object. An object that is not an instance of AbstractTreeItem will be rejected and an Assertion Error will be raised. Likewise if a child already exists within this object, it will silently continue without duplicating the child. + Parameters ---------- child: AbstractTreeItem Child AbstractTreeItem to append to this object. + Returns + ------- + str: + UID of appended child + Raises ------ AssertionError: If child is not an instance of AbstractTreeItem, an Assertion Error is raised, and the child will not be appended to this object. """ - assert isinstance(child, AbstractTreeItem) + assert isinstance(child, BaseTreeItem) if child in self._children: # Appending same child should have no effect - return + return child.uid child.parent = self self._children.append(child) - self._child_map[child.uid] = child self.update() + return child.uid - def remove_child(self, child: Union[AbstractTreeItem, str]): - # Allow children to be removed by UID - if isinstance(child, str): - child = self._child_map[child] + def remove_child(self, child: AbstractTreeItem): if child not in self._children: return False - raise ValueError("Child does not exist for this parent") child.parent = None - del self._child_map[child.uid] self._children.remove(child) self.update() return True @@ -200,7 +206,6 @@ def insert_child(self, child: AbstractTreeItem, index: int) -> bool: return True print("Inserting ATI child at index: ", index) self._children.insert(index, child) - self._child_map[child.uid] = child self.update() return True @@ -238,10 +243,16 @@ def update(self, **kwargs): self.parent.update(**kwargs) +_style_roles = {QtDataRoles.BackgroundRole: 'bg', + QtDataRoles.ForegroundRole: 'fg', + QtDataRoles.DecorationRole: 'icon', + QtDataRoles.FontRole: 'font'} + + class TreeItem(BaseTreeItem): """ - TreeItem extends BaseTreeItem and adds some extra convenience methods ( - __str__, __len__, __iter__, __getitem__, __contains__), as well as + TreeItem extends BaseTreeItem and adds some extra convenience methods + (__str__, __len__, __iter__, __getitem__, __contains__), as well as defining a default data() method which can apply styles set via the style property in this class. """ @@ -249,10 +260,6 @@ class TreeItem(BaseTreeItem): def __init__(self, uid: str, parent: AbstractTreeItem=None): super().__init__(uid, parent) self._style = {} - self._style_roles = {QtDataRoles.BackgroundRole: 'bg', - QtDataRoles.ForegroundRole: 'fg', - QtDataRoles.DecorationRole: 'icon', - QtDataRoles.FontRole: 'font'} def __str__(self): return "".format(self.uid) @@ -303,8 +310,8 @@ def data(self, role: QtDataRoles): # Allow style specification by QtDataRole or by name e.g. 'bg', 'fg' if role in self._style: return self._style[role] - if role in self._style_roles: - key = self._style_roles[role] + if role in _style_roles: + key = _style_roles[role] return self._style.get(key, None) return None @@ -536,4 +543,3 @@ def orphan(self): return res except ValueError: return False - From eb86490101ad271644053fa84c8f4af1732c7da5 Mon Sep 17 00:00:00 2001 From: bradyzp Date: Mon, 25 Dec 2017 08:32:50 -0700 Subject: [PATCH 032/236] ENH/CLN: Update various dialogs, fix high-res display. Cleaned up new Project Creation Dialog, fixed high-resolution issues due to fixed/static values. Minor spacing/resoulution fixes for add_flight_dialog and splash_screen --- dgp/gui/ui/add_flight_dialog.ui | 380 ++++++++++++------------ dgp/gui/ui/project_dialog.ui | 494 ++++++++++++++++++++------------ dgp/gui/ui/splash_screen.ui | 79 ++++- 3 files changed, 576 insertions(+), 377 deletions(-) diff --git a/dgp/gui/ui/add_flight_dialog.ui b/dgp/gui/ui/add_flight_dialog.ui index 7415ee4..794c22f 100644 --- a/dgp/gui/ui/add_flight_dialog.ui +++ b/dgp/gui/ui/add_flight_dialog.ui @@ -6,14 +6,14 @@ 0 0 - 650 - 650 + 550 + 466 - 10000 - 10000 + 16777215 + 16777215 @@ -23,231 +23,247 @@ :/images/assets/flight_icon.png:/images/assets/flight_icon.png - - - - - Flight Name (Reference)* - - - text_name - - - - - - - - - - Flight Date - - - date_flight - - - - - - - yyyy-MM-dd - - - true - - - - 2017 - 1 - 1 - - - - - - - - Gravity Meter - - - combo_meter - - - - - - - - - - Flight UUID - - - - - - - false - - - true - - - - - - - Gravity Data - - - path_gravity - - - - - - - - - - 2 - 0 - + + true + + + + + + + + Flight Name (Reference)* - - - 200 - 0 - + + text_name - - - - - 0 - 0 - + + + + + + + Flight Date - - - 16777215 - 16777215 - + + date_flight - - - 50 - 0 - + + + + + + yyyy-MM-dd - - Browse + + true - - Browse + + + 2017 + 1 + 1 + + + + + - ... + Gravity Meter + + + combo_meter - - - - - - GPS Data - - - path_gps - - - - - - - - - - 2 - 0 - - - - - 200 - 0 - + + + + Flight UUID - - - - - 0 - 0 - + + + + + + + false - - - 16777215 - 16777215 - + + true - - - 50 - 0 - + + + + + + Gravity Data - - Browse + + path_gravity + + + + + + + + + 2 + 0 + + + + + 200 + 0 + + + + + + + + + 0 + 0 + + + + + 16777215 + 16777215 + + + + + 50 + 0 + + + + Browse + + + Browse + + + ... + + + + + + + - ... + GPS Data + + + path_gps + + + + + + + 2 + 0 + + + + + 200 + 0 + + + + + + + + + 0 + 0 + + + + + 16777215 + 16777215 + + + + + 50 + 0 + + + + Browse + + + ... + + + + + - + + + + Qt::Vertical + + + + 20 + 40 + + + + + Flight Parameters - - - - QDialogButtonBox::Cancel|QDialogButtonBox::Ok - - + + - + <html><head/><body><p align="right">*required fields</p></body></html> - - + + + + QDialogButtonBox::Cancel|QDialogButtonBox::Ok + + - text_name - date_flight - combo_meter path_gravity browse_gravity path_gps browse_gps - text_uuid diff --git a/dgp/gui/ui/project_dialog.ui b/dgp/gui/ui/project_dialog.ui index 05033e4..6b9464c 100644 --- a/dgp/gui/ui/project_dialog.ui +++ b/dgp/gui/ui/project_dialog.ui @@ -6,142 +6,359 @@ 0 0 - 700 - 300 + 900 + 450 - + 0 0 - 500 - 300 + 0 + 0 - 700 - 300 + 16777215 + 16777215 + + + + + 50 + 50 Create New Project + + + :/images/assets/new_project.png:/images/assets/new_project.png + + + true + false - + 0 - - - - - - Project Name:* - - - prj_name - - - - - - - - 0 - 0 - + + + + + 0 + 0 + + + + + 0 + 0 + + + + + 16777215 + 16777215 + + + + QFrame::Raised + + + 1 + + + + 20 + 20 + + + + QListView::ListMode + + + true + + + + + + + 3 + + + + + QLayout::SetNoConstraint - - - 200 - 0 - + + QFormLayout::ExpandingFieldsGrow - - - - - - - 0 - 0 - + + Qt::AlignLeading|Qt::AlignLeft|Qt::AlignVCenter - - Project Directory:* + + Qt::AlignRight|Qt::AlignTop|Qt::AlignTrailing - - prj_dir + + 3 - - - - - - + + - + 0 - 1 + 0 - 200 - 0 + 0 + 25 + + Project Name:* + + + prj_name + + + + + + + + + + 0 + 1 + + + + + 0 + 25 + + + + + 8 + + + + + + + + + + + 0 + 0 + + + + + 0 + 25 + + + + Project Directory:* + + + prj_dir + + + + + + + 2 + + + 0 + + + 0 + + + + + + 0 + 1 + + + + + 0 + 25 + + + + + 8 + + + + true + + + Qt::AlignLeading|Qt::AlignLeft|Qt::AlignVCenter + + + false + + + + + + + + 0 + 0 + + + + ... + + + + + + + + + + 75 + true + + + + required fields* + + + Qt::AlignRight|Qt::AlignTrailing|Qt::AlignVCenter + + + + + + + Qt::Horizontal + + + + 40 + 20 + + + + + + + + false + + + Properties + + + + + + + + + + + + + false + + + + + + + + + + + Qt::Horizontal + + + + 40 + 20 + + + + - + - + 0 0 - 10 + 0 0 - 30 + 16777215 16777215 - - Browse - - ... + Cancel - - - Select Desktop Folder + + + + 0 + 0 + - - + + + 0 + 0 + + + + + 16777215 + 16777215 + - - - :/images/assets/folder_open.png:/images/assets/folder_open.png + + Create @@ -149,128 +366,9 @@ - - - - - - - 75 - 0 - - - - - 500 - 16777215 - - - - Cancel - - - - - - - - 100 - 0 - - - - - 500 - 16777215 - - - - Create - - - - - - - - - - 100 - 0 - - - - - 125 - 16777215 - - - - QFrame::Raised - - - 1 - - - - 20 - 20 - - - - QListView::ListMode - - - true - - - - - - - Description: - - - prj_description - - - - - - - - 12 - - - - New Gravity Project - - - - - - - - - - - 75 - true - - - - required fields* - - - - prj_name - prj_dir - prj_browse - prj_description - prj_cancel prj_create prj_type_list @@ -294,5 +392,21 @@ + + prj_properties + clicked() + widget_advanced + show() + + + 301 + 82 + + + 526 + 405 + + + diff --git a/dgp/gui/ui/splash_screen.ui b/dgp/gui/ui/splash_screen.ui index b045b14..19ae1ff 100644 --- a/dgp/gui/ui/splash_screen.ui +++ b/dgp/gui/ui/splash_screen.ui @@ -7,9 +7,15 @@ 0 0 604 - 561 + 620 + + + 0 + 0 + + Dynamic Gravity Processor @@ -52,7 +58,7 @@ - + @@ -86,7 +92,7 @@ - + 100 @@ -102,23 +108,48 @@ - + + + + 0 + 0 + + + + + Qt::AlignCenter + + + true + + + 3 + + + 0 + + + 0 + - &New Project... + &New Project + + Browse for a project + Qt::ImhNone @@ -127,8 +158,27 @@ + + + + Qt::Horizontal + + + + 40 + 20 + + + + + + + 40 + 0 + + color: rgb(255, 0, 0) @@ -137,8 +187,27 @@ + + + + Qt::Horizontal + + + + 40 + 20 + + + + + + + 0 + 0 + + Qt::ImhPreferUppercase From 4de48f7d2e79c5ca0ad7bd8cb314076d5b5d06d0 Mon Sep 17 00:00:00 2001 From: bradyzp Date: Mon, 25 Dec 2017 08:48:24 -0700 Subject: [PATCH 033/236] ENH/CLN: Redesign Advanced Import dialog and behavior. Usability improvement in splash.py - enable double click to select and open project. Redesign advanced_data_import ui and backend code, better import preview handling, and more information displayed. Preview/edit area is now separate pop-out dialog from import window. main.py updated to support new import functionality. --- dgp/gui/dialogs.py | 144 +++++++---- dgp/gui/main.py | 16 +- dgp/gui/splash.py | 24 +- dgp/gui/ui/advanced_data_import.ui | 384 ++++++++++++++++++++--------- dgp/gui/ui/edit_import_view.ui | 158 ++++++++++++ dgp/gui/ui/main_window.ui | 21 +- 6 files changed, 559 insertions(+), 188 deletions(-) create mode 100644 dgp/gui/ui/edit_import_view.ui diff --git a/dgp/gui/dialogs.py b/dgp/gui/dialogs.py index 5ed9f42..9461c0d 100644 --- a/dgp/gui/dialogs.py +++ b/dgp/gui/dialogs.py @@ -6,7 +6,7 @@ import pathlib from typing import Union, List -from PyQt5 import Qt +import PyQt5.Qt as Qt import PyQt5.QtWidgets as QtWidgets import PyQt5.QtCore as QtCore from PyQt5.uic import loadUiType @@ -19,6 +19,7 @@ data_dialog, _ = loadUiType('dgp/gui/ui/data_import_dialog.ui') advanced_import, _ = loadUiType('dgp/gui/ui/advanced_data_import.ui') +edit_view, _ = loadUiType('dgp/gui/ui/edit_import_view.ui') flight_dialog, _ = loadUiType('dgp/gui/ui/add_flight_dialog.ui') project_dialog, _ = loadUiType('dgp/gui/ui/project_dialog.ui') info_dialog, _ = loadUiType('dgp/gui/ui/info_dialog.ui') @@ -122,8 +123,52 @@ def content(self) -> (pathlib.Path, str, prj.Flight): return self.path, self.dtype, self.flight +class EditImportView(QtWidgets.QDialog, edit_view): + """ + Take lines of data with corresponding fields and populate custom Table Model + Fields can be exchanged via a custom Selection Delegate, which provides a + drop-down combobox of available fields. + """ + def __init__(self, data, fields, parent): + flags = Qt.Qt.FramelessWindowHint + super().__init__(parent=parent, flags=flags) + self.setupUi(self) + self._base_h = self.height() + self._base_w = self.width() + self._view = self.table_col_edit # type: QtWidgets.QTableView + + self.setup_model(fields, data) + self.btn_reset.clicked.connect(lambda: self.setup_model(fields, data)) + + @property + def columns(self): + return self._view.model().get_row(0) + + def setup_model(self, fields, data): + delegate = SelectionDelegate(fields) + + model = TableModel(fields, editheader=True) + model.append(*fields) + for line in data: + model.append(*line) + + self._view.setModel(model) + self._view.setItemDelegate(delegate) + self._view.resizeColumnsToContents() + + width = self._base_w + for idx in range(model.columnCount()): + width += self._view.columnWidth(idx) + + height = self._base_h - 100 + for idx in range(model.rowCount()): + height += self._view.rowHeight(idx) + + self.resize(self.width(), height) + + class AdvancedImport(QtWidgets.QDialog, advanced_import): - def __init__(self, project, flight, parent=None): + def __init__(self, project, flight, dtype='gravity', parent=None): """ Parameters @@ -138,9 +183,12 @@ def __init__(self, project, flight, parent=None): super().__init__(parent=parent) self.setupUi(self) self._preview_limit = 5 - self._project = project + # self._project = project self._path = None self._flight = flight + self._cols = None + self._dtype = dtype + self.setWindowTitle("Import {}".format(dtype.capitalize())) for flt in project.flights: self.combo_flights.addItem(flt.name, flt) @@ -149,71 +197,65 @@ def __init__(self, project, flight, parent=None): self.combo_flights.setCurrentIndex(self.combo_flights.count()-1) # Signals/Slots - self.line_path.textChanged.connect(self._preview) self.btn_browse.clicked.connect(self.browse_file) - self.btn_setcols.clicked.connect(self._capture) - self.btn_reload.clicked.connect(lambda: self._preview(self._path)) + self.btn_edit_cols.clicked.connect(self._edit_cols) + + self.browse_file() @property def content(self) -> (str, str, List, prj.Flight): - return self._path, self._dtype(), self._capture(), self._flight + return self._path, self._dtype, self._cols, self._flight + + @property + def path(self): + return self._path def accept(self) -> None: self._flight = self.combo_flights.currentData() super().accept() return - def _capture(self) -> Union[None, List]: - table = self.table_preview # type: QtWidgets.QTableView - model = table.model() # type: TableModel - if model is None: - return None - print("Row 0 {}".format(model.get_row(0))) - fields = model.get_row(0) - return fields - - def _dtype(self): - return {'GPS': 'gps', 'Gravity': 'gravity'}.get( - self.group_dtype.checkedButton().text().replace('&', ''), 'gravity') - - def _preview(self, path: str): - if path is None: - return - path = pathlib.Path(path) - if not path.exists(): - print("Path doesn't exist") + def _edit_cols(self): + if self.path is None: return + lines = [] - with path.open('r') as fd: + with open(self.path, mode='r') as fd: for i, line in enumerate(fd): - cells = line.split(',') - lines.append(cells) - if i >= self._preview_limit: + lines.append(line.split(',')) + if i == self._preview_limit: break - dtype = self._dtype() - if dtype == 'gravity': + if self._cols is not None: + fields = self._cols + elif self._dtype == 'gravity': fields = ['gravity', 'long', 'cross', 'beam', 'temp', 'status', 'pressure', 'Etemp', 'GPSweek', 'GPSweekseconds'] - elif dtype == 'gps': - fields = ['mdy', 'hms', 'latitude', 'longitude', 'ell_ht', - 'ortho_ht', 'num_sats', 'pdop'] + elif self._dtype == 'gps': + fields = ['mdy', 'hms', 'lat', 'long', 'ell_ht'] else: - return - delegate = SelectionDelegate(fields) - model = TableModel(fields, editheader=True) - model.append(*fields) - for line in lines: - model.append(*line) - self.table_preview.setModel(model) - self.table_preview.setItemDelegate(delegate) + fields = [] + + dlg = EditImportView(lines, fields=fields, parent=self) + + if dlg.exec_(): + self._cols = dlg.columns + print("Columns from edit: {}".format(self._cols)) def browse_file(self): path, _ = QtWidgets.QFileDialog.getOpenFileName( - self, "Select Data File", os.getcwd(), "Data (*.dat *.csv *.txt)") + self, "Select {} Data File".format(self._dtype.capitalize()), + os.getcwd(), "Data (*.dat *.csv *.txt)") if path: self.line_path.setText(str(path)) self._path = path + stats = os.stat(path) + self.label_fsize.setText("{:.3f} MiB".format(stats.st_size/1048576)) + lines = 0 + with open(path) as fd: + for _ in fd: + lines += 1 + self.field_line_count.setText("{}".format(lines)) class AddFlight(QtWidgets.QDialog, flight_dialog): @@ -291,7 +333,8 @@ def __init__(self, *args): self.prj_create.clicked.connect(self.create_project) self.prj_browse.clicked.connect(self.select_dir) - self.prj_desktop.clicked.connect(self._select_desktop) + desktop = pathlib.Path().home().joinpath('Desktop') + self.prj_dir.setText(str(desktop)) self._project = None @@ -341,18 +384,13 @@ def create_project(self): path = pathlib.Path(self.prj_dir.text()).joinpath(name) if not path.exists(): path.mkdir(parents=True) - self._project = prj.AirborneProject(path, name, - self.prj_description.toPlainText().rstrip()) + self._project = prj.AirborneProject(path, name) else: self.log.error("Invalid Project Type (Not Implemented)") return self.accept() - def _select_desktop(self): - path = pathlib.Path().home().joinpath('Desktop') - self.prj_dir.setText(str(path)) - def select_dir(self): path = QtWidgets.QFileDialog.getExistingDirectory( self, "Select Project Parent Directory") @@ -372,12 +410,12 @@ def __init__(self, model, parent=None, **kwargs): self.setModel(self._model) self.updates = None - def setModel(self, model): + def setModel(self, model: QtCore.QAbstractTableModel): table = self.table_info # type: QtWidgets.QTableView table.setModel(model) table.resizeColumnsToContents() width = 50 - for col_idx in range(table.colorCount()): + for col_idx in range(model.columnCount()): width += table.columnWidth(col_idx) self.resize(width, self.height()) diff --git a/dgp/gui/main.py b/dgp/gui/main.py index 5f97516..d0be6a1 100644 --- a/dgp/gui/main.py +++ b/dgp/gui/main.py @@ -144,7 +144,11 @@ def _init_slots(self): self.action_file_save.triggered.connect(self.save_project) # Project Menu Actions # - self.action_import_data.triggered.connect(self.import_data_dialog) + # self.action_import_data.triggered.connect(self.import_data_dialog) + self.action_import_grav.triggered.connect( + lambda: self.import_data_dialog('gravity')) + self.action_import_gps.triggered.connect( + lambda: self.import_data_dialog('gps')) self.action_add_flight.triggered.connect(self.add_flight_dialog) # Project Tree View Actions # @@ -152,7 +156,11 @@ def _init_slots(self): # Project Control Buttons # self.prj_add_flight.clicked.connect(self.add_flight_dialog) - self.prj_import_data.clicked.connect(self.import_data_dialog) + # self.prj_import_data.clicked.connect(self.import_data_dialog) + self.prj_import_gps.clicked.connect( + lambda: self.import_data_dialog('gps')) + self.prj_import_grav.clicked.connect( + lambda: self.import_data_dialog('gravity')) # Tab Browser Actions # self.tab_workspace.currentChanged.connect(self._tab_changed) @@ -313,10 +321,10 @@ def save_project(self) -> None: # Project dialog functions ##### - def import_data_dialog(self) -> None: + def import_data_dialog(self, dtype=None) -> None: """Load data file (GPS or Gravity) using a background Thread, then hand it off to the project.""" - dialog = AdvancedImport(self.project, self.current_flight) + dialog = AdvancedImport(self.project, self.current_flight, dtype=dtype) if dialog.exec_(): path, dtype, fields, flight = dialog.content self.import_data(path, dtype, flight, fields=fields) diff --git a/dgp/gui/splash.py b/dgp/gui/splash.py index 5c47560..cc6afc2 100644 --- a/dgp/gui/splash.py +++ b/dgp/gui/splash.py @@ -41,7 +41,10 @@ def __init__(self, *args): # self.dialog_buttons.accepted.connect(self.accept) self.btn_newproject.clicked.connect(self.new_project) self.btn_browse.clicked.connect(self.browse_project) - self.list_projects.currentItemChanged.connect(self.set_selection) + self.list_projects.currentItemChanged.connect( + lambda item: self.set_selection(item, accept=False)) + self.list_projects.itemDoubleClicked.connect( + lambda item: self.set_selection(item, accept=True)) self.project_path = None # type: Path @@ -77,23 +80,9 @@ def accept(self, project=None): self.update_recent_files(self.recent_file, {project.name: project.projectdir}) - # Show a progress dialog for loading the project - # TODO: This may be obsolete now as plots are not generated on load - progress = QtWidgets.QProgressDialog("Loading Project", "Cancel", 0, - len(project), self) - progress.setWindowFlags(QtCore.Qt.Dialog | QtCore.Qt.FramelessWindowHint - | QtCore.Qt.CustomizeWindowHint) - progress.setModal(True) - progress.setMinimumDuration(0) - # Remove the cancel button. - progress.setCancelButton(None) - progress.setValue(1) # Set an initial value to show the dialog main_window = MainWindow(project) - main_window.status.connect(progress.setLabelText) - main_window.progress.connect(progress.setValue) main_window.load() - progress.close() super().accept() return main_window @@ -113,14 +102,17 @@ def set_recent_list(self) -> None: self.list_projects.setCurrentRow(0) return None - def set_selection(self, item: QtWidgets.QListWidgetItem, *args): + def set_selection(self, item: QtWidgets.QListWidgetItem, accept=False): """Called when a recent item is selected""" self.project_path = get_project_file(item.data(QtCore.Qt.UserRole)) if not self.project_path: item.setText("{} - Project Moved or Deleted" .format(item.data(QtCore.Qt.UserRole))) + return self.log.debug("Project path set to {}".format(self.project_path)) + if accept: + self.accept() def new_project(self): """Allow the user to create a new project""" diff --git a/dgp/gui/ui/advanced_data_import.ui b/dgp/gui/ui/advanced_data_import.ui index a0249bb..4ed8399 100644 --- a/dgp/gui/ui/advanced_data_import.ui +++ b/dgp/gui/ui/advanced_data_import.ui @@ -6,81 +6,127 @@ 0 0 - 670 - 502 + 450 + 405 + + + 0 + 0 + + + + + 50 + 0 + + Advanced Import + + + :/images/assets/folder_open.png:/images/assets/folder_open.png + + + 0 + + + 5 + + + 5 + + + + 0 + 0 + + - GroupBox + - + - - - true - - - - - + - &Browse + Path - - + + + + + + + 0 + 0 + + + + true + + + Browse to File + + + + + + + + 0 + 0 + + + + + 9 + + + + ... + + + + - + Flight - - - - - - - Meter + + + + + 0 + 0 + - - - - &Gravity - - - true - - - group_dtype - - - - - + + - G&PS + Meter - - group_dtype - - - - - Data Type: + + + + + 0 + 0 + @@ -88,100 +134,218 @@ - - - + + + Qt::Vertical - - - - - Preview: - - - - - - - Qt::Horizontal - - - - 40 - 20 - - - - - - - - <> - - - QToolButton::DelayedPopup - - - Qt::ToolButtonFollowStyle - - - Qt::DownArrow - - - - - - - Reload - - - - - + + QSizePolicy::Fixed + + + + 20 + 20 + + + - - - false - - - - - + + + + 10 + + - Set Columns + File Properties: + + + 2 + + + Qt::NoTextInteraction - + + + 5 + + + 5 + + + 10 + + + + + Data End + + + 2 + + + + + + + + + + Line Count + + + + + + + 0 Mib + + + + + + + 0 + + + + + + + Trim + + + + + + + + 0 + 0 + + + + + + + + Data Start + + + 2 + + + + + + + File Size (Mib) + + + + + + + Qt::Vertical + + + QSizePolicy::Fixed + + + + 20 + 20 + + + + + + + + + + + + Qt::Horizontal + + + + 40 + 20 + + + + + + + + + 0 + 0 + + + + + 9 + + + + Edit Columns + + + + :/images/assets/meter_config.png:/images/assets/meter_config.png + + + + + + + Qt::Vertical + + QSizePolicy::MinimumExpanding + 20 - 40 + 50 - + + + + 0 + 0 + + Qt::Horizontal QDialogButtonBox::Cancel|QDialogButtonBox::Ok + + false + - + + + - buttonBox + btn_dialog accepted() AdvancedImportData accept() @@ -197,7 +361,7 @@ - buttonBox + btn_dialog rejected() AdvancedImportData reject() diff --git a/dgp/gui/ui/edit_import_view.ui b/dgp/gui/ui/edit_import_view.ui new file mode 100644 index 0000000..c6def77 --- /dev/null +++ b/dgp/gui/ui/edit_import_view.ui @@ -0,0 +1,158 @@ + + + Dialog + + + + 0 + 0 + 303 + 272 + + + + + 0 + 0 + + + + Dialog + + + true + + + true + + + + + + Double Click Column Headers to Change Order + + + + + + + Check to skip first line in file + + + Has header + + + + + + + + 0 + 0 + + + + QAbstractScrollArea::AdjustToContentsOnFirstShow + + + QAbstractItemView::AnyKeyPressed|QAbstractItemView::DoubleClicked|QAbstractItemView::EditKeyPressed|QAbstractItemView::SelectedClicked + + + false + + + + + + + + + + 0 + 0 + + + + Reset + + + + + + + Qt::Horizontal + + + + 40 + 20 + + + + + + + + + 0 + 0 + + + + Cancel + + + + + + + + 0 + 0 + + + + Confirm + + + + + + + + + + + btn_cancel + clicked() + Dialog + reject() + + + 421 + 328 + + + 274 + 174 + + + + + btn_confirm + clicked() + Dialog + accept() + + + 502 + 328 + + + 274 + 174 + + + + + diff --git a/dgp/gui/ui/main_window.ui b/dgp/gui/ui/main_window.ui index 2570bf9..1a9ddbd 100644 --- a/dgp/gui/ui/main_window.ui +++ b/dgp/gui/ui/main_window.ui @@ -82,7 +82,8 @@ Project - + + @@ -189,9 +190,9 @@ - + - Import Data + Import GPS @@ -200,9 +201,9 @@ - + - Reset Channels + Import Gravity @@ -650,6 +651,16 @@ Alt+3 + + + Import GPS + + + + + Import Gravity + + From 3338411363a7a2b6526488dcd745011ad4616a1d Mon Sep 17 00:00:00 2001 From: bradyzp Date: Thu, 28 Dec 2017 03:17:13 -0700 Subject: [PATCH 034/236] ENH/CLN: Enhancements and refactoring on Dialogs Major refactoring of advanced_data_import and it's import preview functionality. Propogated use of BaseDialog to further custom dialogs, and improved BaseDialog message and error facilities. Child classes can now easily display a message in QLabel, or display an error via an error Pop-Up. Also removed hacky logging hooks from BaseDialog, creating purposeful functions instead to handle messages/errors. Cleaned up code in CreateProject dialog, better invalid/empty input detection. Simplified accept handling and moved accept signal definition from code to .ui file. Began introduction of enums for defined type comparison, used to specify ProjectType, DataType etc. Replaced TableModel with TableModel2 (to be renamed and original deleted in future), with more sensible and less hacky handling of table data. Table accepts 2D List array - and possibly Numpy ndarray. In future expand capability to ingest pandas DataFrame as well. --- dgp/gui/dialogs.py | 424 +++++++++++++++++++++-------- dgp/gui/main.py | 5 +- dgp/gui/models.py | 173 ++++++++++-- dgp/gui/ui/advanced_data_import.ui | 57 +++- dgp/gui/ui/edit_import_view.ui | 43 ++- dgp/gui/ui/project_dialog.ui | 31 ++- dgp/lib/enums.py | 105 +++++++ 7 files changed, 675 insertions(+), 163 deletions(-) create mode 100644 dgp/lib/enums.py diff --git a/dgp/gui/dialogs.py b/dgp/gui/dialogs.py index 9461c0d..0c25e1b 100644 --- a/dgp/gui/dialogs.py +++ b/dgp/gui/dialogs.py @@ -1,6 +1,7 @@ # coding: utf-8 import os +import io import logging import datetime import pathlib @@ -12,7 +13,10 @@ from PyQt5.uic import loadUiType import dgp.lib.project as prj -from dgp.gui.models import TableModel, SelectionDelegate +import dgp.lib.enums as enums +import dgp.lib.gravity_ingestor as gi +import dgp.lib.trajectory_ingestor as ti +from dgp.gui.models import TableModel, TableModel2, ComboEditDelegate from dgp.gui.utils import ConsoleHandler, LOG_COLOR_MAP from dgp.lib.etc import gen_uuid @@ -27,14 +31,121 @@ class BaseDialog(QtWidgets.QDialog): - def __init__(self): - self.log = logging.getLogger(__name__) - error_handler = ConsoleHandler(self.write_error) - error_handler.setFormatter(logging.Formatter('%(levelname)s: ' - '%(message)s')) - error_handler.setLevel(logging.DEBUG) - self.log.addHandler(error_handler) - pass + """ + BaseDialog is an attempt to standardize some common features in the + program dialogs. + Currently this class provides a standard logging interface - allowing the + programmer to send logging messages to a GUI receiver (any widget with a + setText method) via the self.log attribute + """ + + def __init__(self, msg_recvr: str=None, parent=None, flags=0): + super().__init__(parent=parent, flags=flags | Qt.Qt.Dialog) + self._log = logging.getLogger(self.__class__.__name__) + self._target = msg_recvr + + @property + def log(self): + return self._log + + @property + def msg_target(self) -> QtWidgets.QWidget: + """ + Raises + ------ + AttributeError: + Raised if target is invalid attribute of the UI class. + + Returns + ------- + QWidget + + """ + return self.__getattribute__(self._target) + + def color_label(self, lbl_txt, color='red'): + """ + Locate and highlight a label in this dialog, searching first by the + label attribute name, then by performing a slower text matching + iterative search through all objects in the dialog. + + Parameters + ---------- + lbl_txt + color + + """ + try: + lbl = self.__getattribute__(lbl_txt) + lbl.setStyleSheet('color: {}'.format(color)) + except AttributeError: + for k, v in self.__dict__.items(): + if not isinstance(v, QtWidgets.QLabel): + continue + if v.text() == lbl_txt: + v.setStyleSheet('color: {}'.format(color)) + + def show_message(self, message, buddy_label=None, log=None, hl_color='red', + msg_color='black', target=None): + """ + + Parameters + ---------- + message : str + Message to display in dialog msg_target Widget, or specified target + buddy_label : str, Optional + Specify a label containing *buddy_label* text that should be + highlighted in relation to this message. e.g. When warning user + that a TextEdit box has not been filled, pass the name of the + associated label to turn it red to draw attention. + log : int, Optional + Optional, log the supplied message to the logging provider at the + given logging level (int or logging module constant) + hl_color : str, Optional + Optional ovveride color to highlight buddy_label with, defaults red + msg_color : str, Optional + Optional ovveride color to display message with + target : str, Optional + Send the message to the target specified here instead of any + target specified at class instantiation. + + """ + if log is not None: + self.log.log(level=log, msg=message) + + if target is None: + target = self.msg_target + else: + target = self.__getattribute__(target) + + try: + target.setText(message) + target.setStyleSheet('color: {clr}'.format(clr=msg_color)) + except AttributeError: + self.log.error("Invalid target for show_message, must support " + "setText attribute.") + + if buddy_label is not None: + self.color_label(buddy_label, color=hl_color) + + def show_error(self, message): + """Logs and displays error message in error dialog box""" + self.log.error(message) + dlg = QtWidgets.QMessageBox(parent=self) + dlg.setStandardButtons(QtWidgets.QMessageBox.Ok) + dlg.setText(message) + dlg.setIcon(QtWidgets.QMessageBox.Critical) + dlg.exec_() + + def validate_not_empty(self, terminator='*'): + """Validate that any labels with Widget buddies are not empty e.g. + QLineEdit fields. + Labels are only checked if their text value ends with the terminator, + default '*' + + If any widgets are empty, the label buddy attribute names are + returned in a list. + """ class ImportData(QtWidgets.QDialog, data_dialog): @@ -123,72 +234,134 @@ def content(self) -> (pathlib.Path, str, prj.Flight): return self.path, self.dtype, self.flight -class EditImportView(QtWidgets.QDialog, edit_view): +class EditImportView(BaseDialog, edit_view): """ Take lines of data with corresponding fields and populate custom Table Model Fields can be exchanged via a custom Selection Delegate, which provides a drop-down combobox of available fields. + + Parameters + ---------- + data + + dtype + + parent + """ - def __init__(self, data, fields, parent): + def __init__(self, data, dtype, parent=None): flags = Qt.Qt.FramelessWindowHint - super().__init__(parent=parent, flags=flags) + super().__init__('label_msg', parent=parent, flags=flags) self.setupUi(self) self._base_h = self.height() self._base_w = self.width() + self._view = self.table_col_edit # type: QtWidgets.QTableView + self._view.setContextMenuPolicy(Qt.Qt.CustomContextMenu) + self._view.customContextMenuRequested.connect(self._view_context_menu) + + self._model = None - self.setup_model(fields, data) - self.btn_reset.clicked.connect(lambda: self.setup_model(fields, data)) + # Set up Field Set selection QComboBox + self._cfs = self.cob_field_set # type: QtWidgets.QComboBox + if dtype == enums.DataTypes.TRAJECTORY: + for fset in enums.GPSFields: + self._cfs.addItem(str(fset.name).upper(), fset) + self._cfs.currentIndexChanged.connect(self._fset_changed) + + self._setup_model(data, self._cfs.currentData().value) + self.btn_reset.clicked.connect( + lambda: self._setup_model(data, self._cfs.currentData().value)) @property def columns(self): - return self._view.model().get_row(0) + return self.model.header_row() + + @property + def model(self) -> TableModel2: + return self._model + + def accept(self): + self.show_error("Test Error") + super().accept() + + def _view_context_menu(self, point: Qt.QPoint): + row = self._view.rowAt(point.y()) + col = self._view.columnAt(point.x()) + if -1 < col < self._view.model().columnCount() and row == 0: + menu = QtWidgets.QMenu() + action = QtWidgets.QAction("Custom Value", parent=menu) + action.triggered.connect( + lambda: print("Value is: ", self.model.value_at(row, col))) + menu.addAction(action) + menu.exec_(self._view.mapToGlobal(point)) - def setup_model(self, fields, data): - delegate = SelectionDelegate(fields) + def _fset_changed(self, index): + curr_fset = self._cfs.currentData().value + self._view.model().set_row(0, curr_fset) - model = TableModel(fields, editheader=True) - model.append(*fields) - for line in data: - model.append(*line) + def _setup_model(self, data, field_set: set): + delegate = ComboEditDelegate() + + header = list(field_set) + # TODO: Data needs to be sanitized at some stage for \n and whitespace + while len(header) < len(data[0]): + header.append('') + + dcopy = [header] + dcopy.extend(data) + + model = TableModel2(dcopy) self._view.setModel(model) self._view.setItemDelegate(delegate) self._view.resizeColumnsToContents() + # Resize dialog to fit sample dataset width = self._base_w for idx in range(model.columnCount()): width += self._view.columnWidth(idx) - height = self._base_h - 100 + height = self._base_h - 75 for idx in range(model.rowCount()): height += self._view.rowHeight(idx) + self._model = model self.resize(self.width(), height) -class AdvancedImport(QtWidgets.QDialog, advanced_import): - def __init__(self, project, flight, dtype='gravity', parent=None): - """ +class AdvancedImport(BaseDialog, advanced_import): + """ - Parameters - ---------- - project : GravityProject - Parent project - flight : Flight - Currently selected flight when Import button was clicked - parent : QWidget - Parent Widget - """ - super().__init__(parent=parent) + Parameters + ---------- + project : GravityProject + Parent project + flight : Flight + Currently selected flight when Import button was clicked + dtype : dgp.lib.enums.DataTypes + + parent : QWidget + Parent Widget + """ + def __init__(self, project, flight, dtype=None, parent=None): + super().__init__(msg_recvr='label_msg', parent=parent) self.setupUi(self) + self._preview_limit = 5 - # self._project = project self._path = None self._flight = flight self._cols = None - self._dtype = dtype - self.setWindowTitle("Import {}".format(dtype.capitalize())) + if dtype is None: + self._dtype = enums.DataTypes.GRAVITY + else: + self._dtype = dtype + print("Initialized with dtype: ", self._dtype) + + self._file_filter = "(*.csv *.dat *.txt)" + self._base_dir = '.' + self._sample = None + self.setWindowTitle("Import {}".format(dtype.name.capitalize())) for flt in project.flights: self.combo_flights.addItem(flt.name, flt) @@ -197,65 +370,97 @@ def __init__(self, project, flight, dtype='gravity', parent=None): self.combo_flights.setCurrentIndex(self.combo_flights.count()-1) # Signals/Slots - self.btn_browse.clicked.connect(self.browse_file) + self.btn_browse.clicked.connect(self.browse) self.btn_edit_cols.clicked.connect(self._edit_cols) - self.browse_file() + self.browse() @property def content(self) -> (str, str, List, prj.Flight): - return self._path, self._dtype, self._cols, self._flight + return self._path, self._dtype.name, self._cols, self._flight @property def path(self): return self._path + # TODO: Data verification (basic check that values exist?) def accept(self) -> None: - self._flight = self.combo_flights.currentData() - super().accept() + if self._path is None: + self.show_message("Path cannot be empty", 'Path*') + else: + self._flight = self.combo_flights.currentData() + super().accept() return def _edit_cols(self): if self.path is None: + # This shouldn't happen as the button should be disabled + self.show_message("Path cannot be empty", 'Path*', + log=logging.WARNING) return - lines = [] + data = [] with open(self.path, mode='r') as fd: for i, line in enumerate(fd): - lines.append(line.split(',')) + line = str(line).rstrip() + data.append(line.split(',')) if i == self._preview_limit: break - if self._cols is not None: - fields = self._cols - elif self._dtype == 'gravity': - fields = ['gravity', 'long', 'cross', 'beam', 'temp', 'status', - 'pressure', 'Etemp', 'GPSweek', 'GPSweekseconds'] - elif self._dtype == 'gps': - fields = ['mdy', 'hms', 'lat', 'long', 'ell_ht'] - else: - fields = [] - - dlg = EditImportView(lines, fields=fields, parent=self) + dlg = EditImportView(data, dtype=self._dtype, parent=self) if dlg.exec_(): self._cols = dlg.columns - print("Columns from edit: {}".format(self._cols)) + self.show_message("Data Columns Updated", msg_color='Brown') - def browse_file(self): + def browse(self): + title = "Select {typ} Data File".format(typ=self._dtype.name) + filt = "{typ} Data {ffilt}".format(typ=self._dtype.name, + ffilt=self._file_filter) path, _ = QtWidgets.QFileDialog.getOpenFileName( - self, "Select {} Data File".format(self._dtype.capitalize()), - os.getcwd(), "Data (*.dat *.csv *.txt)") - if path: - self.line_path.setText(str(path)) - self._path = path - stats = os.stat(path) - self.label_fsize.setText("{:.3f} MiB".format(stats.st_size/1048576)) - lines = 0 - with open(path) as fd: - for _ in fd: - lines += 1 - self.field_line_count.setText("{}".format(lines)) + parent=self, caption=title, directory=self._base_dir, filter=filt, + options=QtWidgets.QFileDialog.ReadOnly) + if not path: + return + + self.line_path.setText(str(path)) + self._path = path + st_size_mib = os.stat(path).st_size / 1048576 + self.field_fsize.setText("{:.3f} MiB".format(st_size_mib)) + + count = 0 + sbuf = io.StringIO() + with open(path) as fd: + data = [fd.readline() for _ in range(self._preview_limit)] + count += self._preview_limit + + last_line = None + for line in fd: + count += 1 + last_line = line + + data.append(last_line) + print(data) + + col_count = len(data[0].split(',')) + self.field_col_count.setText(str(col_count)) + + sbuf.writelines(data) + sbuf.seek(0) + + df = None + if self._dtype == enums.DataTypes.GRAVITY: + df = gi.read_at1a(sbuf) + elif self._dtype == enums.DataTypes.TRAJECTORY: + # TODO: Implement this + pass + # df = ti.import_trajectory(sbuf, ) + + print("Ingested df: ") + if df is not None: print(df) + + self.field_line_count.setText("{}".format(count)) + self.btn_edit_cols.setEnabled(True) class AddFlight(QtWidgets.QDialog, flight_dialog): @@ -319,77 +524,72 @@ def gravity(self): return None -class CreateProject(QtWidgets.QDialog, project_dialog): +class CreateProject(BaseDialog, project_dialog): def __init__(self, *args): - super().__init__(*args) + super().__init__(msg_recvr='label_msg', *args) self.setupUi(self) - self.log = logging.getLogger(__name__) - error_handler = ConsoleHandler(self.write_error) - error_handler.setFormatter(logging.Formatter('%(levelname)s: ' - '%(message)s')) - error_handler.setLevel(logging.DEBUG) - self.log.addHandler(error_handler) + self._project = None - self.prj_create.clicked.connect(self.create_project) self.prj_browse.clicked.connect(self.select_dir) desktop = pathlib.Path().home().joinpath('Desktop') self.prj_dir.setText(str(desktop)) - self._project = None - # Populate the type selection list flt_icon = Qt.QIcon(':images/assets/flight_icon.png') boat_icon = Qt.QIcon(':images/assets/boat_icon.png') dgs_airborne = Qt.QListWidgetItem(flt_icon, 'DGS Airborne', self.prj_type_list) - dgs_airborne.setData(QtCore.Qt.UserRole, 'dgs_airborne') + dgs_airborne.setData(QtCore.Qt.UserRole, enums.ProjectTypes.AIRBORNE) self.prj_type_list.setCurrentItem(dgs_airborne) dgs_marine = Qt.QListWidgetItem(boat_icon, 'DGS Marine', self.prj_type_list) - dgs_marine.setData(QtCore.Qt.UserRole, 'dgs_marine') - - def write_error(self, msg, level=None) -> None: - self.label_required.setText(msg) - self.label_required.setStyleSheet('color: ' + LOG_COLOR_MAP[level]) + dgs_marine.setData(QtCore.Qt.UserRole, enums.ProjectTypes.MARINE) - def create_project(self): + def accept(self): """ - Called upon 'Create' button push, do some basic validation of fields then - accept() if required fields are filled, otherwise color the labels red - :return: None + Called upon 'Create' button push, do some basic validation of fields + then accept() if required fields are filled, otherwise color the + labels red and display a warning message. """ - required_fields = {'prj_name': 'label_name', 'prj_dir': 'label_dir'} - - invalid_input = False - for attr in required_fields.keys(): - if not self.__getattribute__(attr).text(): - self.__getattribute__(required_fields[attr]).setStyleSheet( - 'color: red') - invalid_input = True - else: - self.__getattribute__(required_fields[attr]).setStyleSheet( - 'color: black') - - if not pathlib.Path(self.prj_dir.text()).exists(): - invalid_input = True - self.label_dir.setStyleSheet('color: red') - self.log.error("Invalid Directory") - - if invalid_input: + + invld_fields = [] + for attr, label in self.__dict__.items(): + if not isinstance(label, QtWidgets.QLabel): + continue + text = str(label.text()) + if text.endswith('*'): + buddy = label.buddy() + if buddy and not buddy.text(): + label.setStyleSheet('color: red') + invld_fields.append(text) + elif buddy: + label.setStyleSheet('color: black') + + base_path = pathlib.Path(self.prj_dir.text()) + if not base_path.exists(): + self.show_message("Invalid Directory - Does not Exist", + buddy_label='label_dir') return - if self.prj_type_list.currentItem().data(QtCore.Qt.UserRole) == 'dgs_airborne': + if invld_fields: + self.show_message('Verify that all fields are filled.') + return + + # TODO: Future implementation for Project types other than DGS AT1A + cdata = self.prj_type_list.currentItem().data(QtCore.Qt.UserRole) + if cdata == enums.ProjectTypes.AIRBORNE: name = str(self.prj_name.text()).rstrip() path = pathlib.Path(self.prj_dir.text()).joinpath(name) if not path.exists(): path.mkdir(parents=True) self._project = prj.AirborneProject(path, name) else: - self.log.error("Invalid Project Type (Not Implemented)") + self.show_message("Invalid Project Type (Not yet implemented)", + log=logging.WARNING, msg_color='red') return - self.accept() + super().accept() def select_dir(self): path = QtWidgets.QFileDialog.getExistingDirectory( diff --git a/dgp/gui/main.py b/dgp/gui/main.py index d0be6a1..5aa9b86 100644 --- a/dgp/gui/main.py +++ b/dgp/gui/main.py @@ -16,6 +16,7 @@ import dgp.lib.project as prj import dgp.lib.types as types +import dgp.lib.enums as enums from dgp.gui.loader import LoadFile from dgp.gui.utils import (ConsoleHandler, LOG_FORMAT, LOG_LEVEL_MAP, get_project_file) @@ -158,9 +159,9 @@ def _init_slots(self): self.prj_add_flight.clicked.connect(self.add_flight_dialog) # self.prj_import_data.clicked.connect(self.import_data_dialog) self.prj_import_gps.clicked.connect( - lambda: self.import_data_dialog('gps')) + lambda: self.import_data_dialog(enums.DataTypes.TRAJECTORY)) self.prj_import_grav.clicked.connect( - lambda: self.import_data_dialog('gravity')) + lambda: self.import_data_dialog(enums.DataTypes.GRAVITY)) # Tab Browser Actions # self.tab_workspace.currentChanged.connect(self._tab_changed) diff --git a/dgp/gui/models.py b/dgp/gui/models.py index a84197a..c580c6e 100644 --- a/dgp/gui/models.py +++ b/dgp/gui/models.py @@ -73,11 +73,6 @@ def get_row(self, row: int): def updates(self): return self._updates - @property - def data(self): - # TODO: Work on some sort of mapping to map column headers to row values - return self._rows - # Required implementations of super class (for a basic, non-editable table) def rowCount(self, parent=None, *args, **kwargs): @@ -91,7 +86,7 @@ def data(self, index: QModelIndex, role=None): try: return self._rows[index.row()][index.column()] except IndexError: - return None + return QtCore.QVariant() return QtCore.QVariant() def flags(self, index: QModelIndex): @@ -105,7 +100,8 @@ def flags(self, index: QModelIndex): def headerData(self, section, orientation, role=None): if role == QtCore.Qt.DisplayRole and orientation == QtCore.Qt.Horizontal: - return self._cols[section] + return QVariant(section) + # return self._cols[section] # Required implementations of super class for editable table @@ -121,6 +117,81 @@ def setData(self, index: QtCore.QModelIndex, value: QtCore.QVariant, role=None): return False +class TableModel2(QtCore.QAbstractTableModel): + """Simple table model of key: value pairs. + Parameters + ---------- + data : List + 2D List of data by rows/columns, data[0] is assumed to contain the column + headers for the data. + """ + + def __init__(self, data, parent=None): + super().__init__(parent=parent) + + self._data = data + + def header_row(self): + return self._data[0] + + def value_at(self, row, col): + return self._data[row][col] + + def set_row(self, index, values): + try: + nvals = list(values) + while len(nvals) < self.columnCount(): + nvals.append(' ') + self._data[index] = nvals + except IndexError: + print("Unable to set data at index: ", index) + return False + self.dataChanged.emit(self.index(index, 0), + self.index(index, len(self._data[index]))) + return True + + # Required implementations of super class (for a basic, non-editable table) + + def rowCount(self, parent=None, *args, **kwargs): + return len(self._data) + + def columnCount(self, parent=None, *args, **kwargs): + return len(self._data[0]) + + def data(self, index: QModelIndex, role=None): + if role == QtCore.Qt.DisplayRole or role == QtCore.Qt.EditRole: + try: + val = self._data[index.row()][index.column()] + return val + except IndexError: + return QtCore.QVariant() + return QtCore.QVariant() + + def flags(self, index: QModelIndex): + flags = QtCore.Qt.ItemIsSelectable | QtCore.Qt.ItemIsEnabled + if index.row() == 0: + # Allow editing of first row (Column headers) + flags = flags | QtCore.Qt.ItemIsEditable + return flags + + def headerData(self, section, orientation, role=None): + if role == QtCore.Qt.DisplayRole and orientation == QtCore.Qt.Horizontal: + return QtCore.QVariant() + + # Required implementations of super class for editable table + + def setData(self, index: QtCore.QModelIndex, value, role=None): + """Basic implementation of editable model. This doesn't propagate the + changes to the underlying object upon which the model was based + though (yet)""" + if index.isValid() and role == QtCore.Qt.ItemIsEditable: + self._data[index.row()][index.column()] = value + self.dataChanged.emit(index, index) + return True + else: + return False + + class BaseTreeModel(QAbstractItemModel): """ Define common methods required for a Tree Model based on @@ -277,47 +348,91 @@ def flags(self, index: QModelIndex) -> QtItemFlags: return QtCore.Qt.ItemIsSelectable | QtCore.Qt.ItemIsEnabled -# QStyledItemDelegate -class SelectionDelegate(Qt.QStyledItemDelegate): +class ComboEditDelegate(Qt.QStyledItemDelegate): """Used by the Advanced Import Dialog to enable column selection/setting.""" - def __init__(self, choices, parent=None): + def __init__(self, options=None, parent=None): super().__init__(parent=parent) - self._choices = choices + self._options = options + + @property + def options(self): + return self._options + + @options.setter + def options(self, value): + self._options = list(value) def createEditor(self, parent: QWidget, option: Qt.QStyleOptionViewItem, index: QModelIndex) -> QWidget: - """Creates the editor widget to display in the view""" + """ + Create the Editor widget. The widget will be populated with data in + the setEditorData method, which is called by the view immediately + after creation of the editor. + + Parameters + ---------- + parent + option + index + + Returns + ------- + QWidget + + """ editor = QComboBox(parent) editor.setFrame(False) - for choice in sorted(self._choices): - editor.addItem(choice) return editor def setEditorData(self, editor: QWidget, index: QModelIndex) -> None: - """Set the value displayed in the editor widget based on the model data - at the index""" - combobox = editor # type: QComboBox + """ + Sets the options in the supplied editor widget. This delegate class + expects a QComboBox widget, and will populate the combobox with + options supplied by the self.options property, or will construct them + from the current row if self.options is None. + + Parameters + ---------- + editor + index + + Returns + ------- + + """ + if not isinstance(editor, QComboBox): + print("Unexpected editor type.") + return value = str(index.model().data(index, QtDataRoles.EditRole)) - index = combobox.findText(value) # returns -1 if value not found - if index != -1: - combobox.setCurrentIndex(index) + if self.options is None: + # Construct set of choices by scanning columns at the current row + model = index.model() + row = index.row() + self.options = {model.data(model.index(row, c), QtDataRoles.EditRole) + for c in range(model.columnCount())} + + for choice in sorted(self.options): + editor.addItem(choice) + + index = editor.findText(value, flags=Qt.Qt.MatchExactly) + if editor.currentIndex() == index: + return + elif index == -1: + # -1 is returned by findText if text is not found + # In this case add the value to list of options in combobox + editor.addItem(value) + editor.setCurrentIndex(editor.count() - 1) else: - combobox.addItem(value) - combobox.setCurrentIndex(combobox.count() - 1) + editor.setCurrentIndex(index) def setModelData(self, editor: QWidget, model: QAbstractItemModel, index: QModelIndex) -> None: combobox = editor # type: QComboBox value = str(combobox.currentText()) - row = index.row() - for c in range(model.columnCount()): - mindex = model.index(row, c) - data = str(model.data(mindex, QtCore.Qt.DisplayRole)) - if data == value: - model.setData(mindex, '', QtCore.Qt.EditRole) model.setData(index, value, QtCore.Qt.EditRole) - def updateEditorGeometry(self, editor: QWidget, option: Qt.QStyleOptionViewItem, + def updateEditorGeometry(self, editor: QWidget, + option: Qt.QStyleOptionViewItem, index: QModelIndex) -> None: editor.setGeometry(option.rect) diff --git a/dgp/gui/ui/advanced_data_import.ui b/dgp/gui/ui/advanced_data_import.ui index 4ed8399..d573852 100644 --- a/dgp/gui/ui/advanced_data_import.ui +++ b/dgp/gui/ui/advanced_data_import.ui @@ -7,7 +7,7 @@ 0 0 450 - 405 + 418 @@ -54,7 +54,7 @@ - Path + Path* @@ -168,7 +168,7 @@ - + 5 @@ -189,7 +189,11 @@ - + + + false + + @@ -199,7 +203,7 @@ - + 0 Mib @@ -214,6 +218,9 @@ + + false + Trim @@ -221,6 +228,9 @@ + + false + 0 @@ -246,6 +256,20 @@ + + + + 0 + + + + + + + Column Count: + + + @@ -262,6 +286,19 @@ + + + + Qt::Vertical + + + + 20 + 40 + + + + @@ -281,6 +318,9 @@ + + false + 0 @@ -319,6 +359,13 @@ + + + + + + + diff --git a/dgp/gui/ui/edit_import_view.ui b/dgp/gui/ui/edit_import_view.ui index c6def77..1248f99 100644 --- a/dgp/gui/ui/edit_import_view.ui +++ b/dgp/gui/ui/edit_import_view.ui @@ -6,8 +6,8 @@ 0 0 - 303 - 272 + 304 + 296 @@ -34,14 +34,28 @@ - - - Check to skip first line in file - - - Has header - - + + + + + Check to skip first line in file + + + Has header + + + + + + + Field Set: + + + + + + + @@ -63,7 +77,14 @@ - + + + + + + + + diff --git a/dgp/gui/ui/project_dialog.ui b/dgp/gui/ui/project_dialog.ui index 6b9464c..93e29c0 100644 --- a/dgp/gui/ui/project_dialog.ui +++ b/dgp/gui/ui/project_dialog.ui @@ -286,6 +286,13 @@ + + + + + + + @@ -313,7 +320,7 @@ - + 0 @@ -338,7 +345,7 @@ - + 0 @@ -369,7 +376,7 @@ - prj_create + btn_create prj_type_list @@ -377,7 +384,7 @@ - prj_cancel + btn_cancel clicked() Dialog reject() @@ -408,5 +415,21 @@ + + btn_create + clicked() + Dialog + accept() + + + 851 + 427 + + + 449 + 224 + + + diff --git a/dgp/lib/enums.py b/dgp/lib/enums.py new file mode 100644 index 0000000..b36a3b8 --- /dev/null +++ b/dgp/lib/enums.py @@ -0,0 +1,105 @@ +# coding: utf-8 + +import enum +import logging + +""" +Dynamic Gravity Processor (DGP) :: lib/enums.py +License: Apache License V2 + +Overview: +enums.py consolidates various enumeration structures used throughout the project + +Compatibility: +As we are still currently targetting Python 3.5 the following Enum classes +cannot be used - they are not introduced until Python 3.6 + +- enum.Flag +- enum.IntFlag +- enum.auto + +""" + + +LOG_LEVEL_MAP = {'debug': logging.DEBUG, 'info': logging.INFO, + 'warning': logging.WARNING, 'error': logging.ERROR, + 'critical': logging.CRITICAL} + + +class LogColors(enum.Enum): + DEBUG = 'blue' + INFO = 'yellow' + WARNING = 'brown' + ERROR = 'red' + CRITICAL = 'orange' + + +class ProjectTypes(enum.Enum): + AIRBORNE = 'airborne' + MARINE = 'marine' + + +class MeterTypes(enum.Enum): + """Gravity Meter Types""" + AT1A = 'at1a' + AT1M = 'at1m' + ZLS = 'zls' + TAGS = 'tags' + + +class DataTypes(enum.Enum): + """Gravity/Trajectory Data Types""" + # TODO: Add different GPS format enums + GRAVITY = 'gravity' + TRAJECTORY = 'trajectory' + AT1A = 'at1a' + AT1M = 'at1m' + ZLS = 'zls' + TAGS = 'tags' + + +class GPSFields(enum.Enum): + sow = {'week', 'sow', 'lat', 'long', 'ell_ht'} + hms = {'mdy', 'hms', 'lat', 'long', 'ell_ht'} + serial = {'datenum', 'lat', 'long', 'ell_ht'} + + +class QtItemFlags(enum.IntEnum): + """Qt Item Flags""" + NoItemFlags = 0 + ItemIsSelectable = 1 + ItemIsEditable = 2 + ItemIsDragEnabled = 4 + ItemIsDropEnabled = 8 + ItemIsUserCheckable = 16 + ItemIsEnabled = 32 + ItemIsTristate = 64 + + +class QtDataRoles(enum.IntEnum): + """Qt Item Data Roles""" + # Data to be rendered as text (QString) + DisplayRole = 0 + # Data to be rendered as decoration (QColor, QIcon, QPixmap) + DecorationRole = 1 + # Data displayed in edit mode (QString) + EditRole = 2 + # Data to be displayed in a tooltip on hover (QString) + ToolTipRole = 3 + # Data to be displayed in the status bar on hover (QString) + StatusTipRole = 4 + WhatsThisRole = 5 + # Font used by the delegate to render this item (QFont) + FontRole = 6 + TextAlignmentRole = 7 + # Background color used to render this item (QBrush) + BackgroundRole = 8 + # Foreground or font color used to render this item (QBrush) + ForegroundRole = 9 + CheckStateRole = 10 + SizeHintRole = 13 + InitialSortOrderRole = 14 + + UserRole = 32 + UIDRole = 33 + From e75cc67aa6c9540e2c98adcf8cbc9ab9e058196e Mon Sep 17 00:00:00 2001 From: bradyzp Date: Thu, 28 Dec 2017 03:27:14 -0700 Subject: [PATCH 035/236] TST/FIX: Fix API and Test errors due to changes in model child lookup. Update to TreeItem code changed the way that children could be looked-up, instead of a single method accepting str(UID) or int(index) these have been separated, .get_child(uid) now does an iterative lookup for the specified uid, and .child(index) returns the child at the given list index. --- dgp/lib/project.py | 2 +- dgp/lib/types.py | 4 ++++ tests/test_project.py | 5 +++-- tests/test_treemodel.py | 4 ++-- 4 files changed, 10 insertions(+), 5 deletions(-) diff --git a/dgp/lib/project.py b/dgp/lib/project.py index 237d1d7..6d9f27f 100644 --- a/dgp/lib/project.py +++ b/dgp/lib/project.py @@ -539,7 +539,7 @@ def remove_flight(self, flight: Flight): self.get_child(self._flight_uid).remove_child(flight) def get_flight(self, uid): - return self.get_child(self._flight_uid).child(uid) + return self.get_child(self._flight_uid).get_child(uid) @property def count_flights(self): diff --git a/dgp/lib/types.py b/dgp/lib/types.py index 9cff935..fca259a 100644 --- a/dgp/lib/types.py +++ b/dgp/lib/types.py @@ -158,6 +158,8 @@ def get_child(self, uid: str) -> 'BaseTreeItem': for child in self._children: if child.uid == uid: return child + else: + raise KeyError("Child UID does not exist.") def append_child(self, child: AbstractTreeItem) -> str: """ @@ -275,6 +277,8 @@ def __getitem__(self, key: Union[int, str]): """Permit child access by ordered index, or UID""" if not isinstance(key, (int, str)): raise ValueError("Key must be int or str type") + if isinstance(key, str): + return self.get_child(key) return self.child(key) def __contains__(self, item: AbstractTreeItem): diff --git a/tests/test_project.py b/tests/test_project.py index 3cc87af..3afedea 100644 --- a/tests/test_project.py +++ b/tests/test_project.py @@ -65,7 +65,8 @@ def test_pickle_project(self): loaded_project = AirborneProject.load(save_loc) self.assertIsInstance(loaded_project, AirborneProject) self.assertEqual(len(list(loaded_project.flights)), 1) - self.assertEqual(loaded_project.get_flight(flight.uid).uid, flight.uid) + self.assertEqual(loaded_project.get_flight(flight.uid).uid, + flight.uid) self.assertEqual(loaded_project.get_flight(flight.uid).meter.name, 'AT1A-5') def test_flight_iteration(self): @@ -74,7 +75,7 @@ def test_flight_iteration(self): line1 = test_flight.add_line(210, 350.3) lines = [line0, line1] - for line in test_flight._lines: + for line in test_flight.lines: self.assertTrue(line in lines) # TODO: Fix ImportWarning generated by pytables? diff --git a/tests/test_treemodel.py b/tests/test_treemodel.py index 4ec31b9..ccf68ef 100644 --- a/tests/test_treemodel.py +++ b/tests/test_treemodel.py @@ -48,7 +48,7 @@ def test_tree_child(self): self.assertEqual(ti.indexof(child), 0) child1 = types.TreeItem("uid456", parent=ti) self.assertEqual(child1.parent, ti) - self.assertEqual(child1, ti.child("uid456")) + self.assertEqual(child1, ti.get_child("uid456")) self.assertEqual(child1.row(), 1) def test_tree_iter(self): @@ -99,7 +99,7 @@ def test_remove_child(self): self.ti.append_child(self.child0) self.ti.append_child(self.child1) self.assertEqual(len(self.ti), 2) - self.ti.remove_child(self.uid_ch0) + self.ti.remove_child(self.child0) self.assertEqual(len(self.ti), 1) def test_tree_contains(self): From 5128971b353bce623c56d432f98ee5ffbb1e8837 Mon Sep 17 00:00:00 2001 From: bradyzp Date: Fri, 29 Dec 2017 17:11:28 +0100 Subject: [PATCH 036/236] ENH: Further enhancements to import dialog. Simplified logic of Import dialog file loading - instead of passing various state back to gui/main to then be loaded by loader.py, the AdvancedImport dialog instantiates the loader thread, then emits the loaded data as a signal to main. Minor changes made to gui/loader.py to incorporate type Enumerations, and to enable skiprows to be passed as parameter (to skip existing header). Column/field definitions were added for AT1A and ZLS type meters to lib/enums.py - used by the AdvancedImport dialog to enable editing/import of these files. ZLS import functionality is not complete however - it is not yet supported by loader.py. CLN: Minor formatting tweaks to gravity_ingestor, and updated to accept skiprows parameter. --- dgp/gui/dialogs.py | 217 ++++++++++++++++++++--------- dgp/gui/loader.py | 47 +++++-- dgp/gui/main.py | 34 +++-- dgp/gui/ui/advanced_data_import.ui | 127 +++++++++++------ dgp/gui/ui/edit_import_view.ui | 33 ++++- dgp/lib/enums.py | 17 ++- dgp/lib/gravity_ingestor.py | 13 +- 7 files changed, 346 insertions(+), 142 deletions(-) diff --git a/dgp/gui/dialogs.py b/dgp/gui/dialogs.py index 0c25e1b..8e280bf 100644 --- a/dgp/gui/dialogs.py +++ b/dgp/gui/dialogs.py @@ -5,7 +5,6 @@ import logging import datetime import pathlib -from typing import Union, List import PyQt5.Qt as Qt import PyQt5.QtWidgets as QtWidgets @@ -14,10 +13,9 @@ import dgp.lib.project as prj import dgp.lib.enums as enums -import dgp.lib.gravity_ingestor as gi -import dgp.lib.trajectory_ingestor as ti +import dgp.gui.loader as qloader from dgp.gui.models import TableModel, TableModel2, ComboEditDelegate -from dgp.gui.utils import ConsoleHandler, LOG_COLOR_MAP +from dgp.lib.types import DataSource from dgp.lib.etc import gen_uuid @@ -242,75 +240,105 @@ class EditImportView(BaseDialog, edit_view): Parameters ---------- - data + field_enum : + An enumeration consisting of Enumerated items mapped to Field Tuples + i.e. field_enum.AT1A.value == ('Gravity', 'long', 'cross', ...) - dtype - - parent + parent : + Parent Widget to this Dialog """ - def __init__(self, data, dtype, parent=None): - flags = Qt.Qt.FramelessWindowHint + def __init__(self, field_enum, parent=None): + flags = Qt.Qt.Dialog super().__init__('label_msg', parent=parent, flags=flags) self.setupUi(self) self._base_h = self.height() self._base_w = self.width() + self._fields = field_enum + self._cfs = self.cob_field_set # type: QtWidgets.QComboBox + self._data = None + # Configure the QTableView self._view = self.table_col_edit # type: QtWidgets.QTableView self._view.setContextMenuPolicy(Qt.Qt.CustomContextMenu) self._view.customContextMenuRequested.connect(self._view_context_menu) - self._model = None + # Configure the QComboBox for Field Set selection + for fset in field_enum: + self._cfs.addItem(str(fset.name).upper(), fset) - # Set up Field Set selection QComboBox - self._cfs = self.cob_field_set # type: QtWidgets.QComboBox - if dtype == enums.DataTypes.TRAJECTORY: - for fset in enums.GPSFields: - self._cfs.addItem(str(fset.name).upper(), fset) - self._cfs.currentIndexChanged.connect(self._fset_changed) + self._cfs.currentIndexChanged.connect(lambda: self._setup_model( + self._data, self._cfs.currentData())) + self.btn_reset.clicked.connect(lambda: self._setup_model( + self._data, self._cfs.currentData())) - self._setup_model(data, self._cfs.currentData().value) - self.btn_reset.clicked.connect( - lambda: self._setup_model(data, self._cfs.currentData().value)) + def exec_(self): + if self._data is None: + raise ValueError("Data must be set before executing dialog.") + return super().exec_() + + def set_state(self, data, current_field=None): + self._data = data + self._setup_model(data, self._cfs.currentData()) + if current_field is not None: + idx = self._cfs.findText(current_field.name, + flags=Qt.Qt.MatchExactly) + self._cfs.setCurrentIndex(idx) @property def columns(self): return self.model.header_row() + @property + def field_enum(self): + return self._cfs.currentData() + @property def model(self) -> TableModel2: - return self._model + return self._view.model() + + @property + def skip_row(self) -> bool: + """Returns value of UI's 'Has Header' CheckBox to determine if first + row should be skipped (Header already defined in data).""" + return self.chb_has_header.isChecked() def accept(self): - self.show_error("Test Error") super().accept() def _view_context_menu(self, point: Qt.QPoint): row = self._view.rowAt(point.y()) col = self._view.columnAt(point.x()) + index = self.model.index(row, col) if -1 < col < self._view.model().columnCount() and row == 0: menu = QtWidgets.QMenu() action = QtWidgets.QAction("Custom Value", parent=menu) - action.triggered.connect( - lambda: print("Value is: ", self.model.value_at(row, col))) + action.triggered.connect(lambda: self._custom_label(index)) + menu.addAction(action) menu.exec_(self._view.mapToGlobal(point)) - def _fset_changed(self, index): - curr_fset = self._cfs.currentData().value - self._view.model().set_row(0, curr_fset) + def _custom_label(self, index: QtCore.QModelIndex): + # For some reason QInputDialog.getText does not recognize kwargs + cur_val = index.data(role=QtCore.Qt.DisplayRole) + text, ok = QtWidgets.QInputDialog.getText(self, + "Input Value", + "Input Custom Value", + text=cur_val) + if ok: + self.model.setData(index, text.strip()) + return - def _setup_model(self, data, field_set: set): + def _setup_model(self, data, field_set): delegate = ComboEditDelegate() - header = list(field_set) + header = list(field_set.value) # TODO: Data needs to be sanitized at some stage for \n and whitespace while len(header) < len(data[0]): header.append('') dcopy = [header] dcopy.extend(data) - model = TableModel2(dcopy) self._view.setModel(model) @@ -322,6 +350,7 @@ def _setup_model(self, data, field_set: set): for idx in range(model.columnCount()): width += self._view.columnWidth(idx) + # TODO: This fixed pixel value is not ideal height = self._base_h - 75 for idx in range(model.rowCount()): height += self._view.rowHeight(idx) @@ -332,6 +361,10 @@ def _setup_model(self, data, field_set: set): class AdvancedImport(BaseDialog, advanced_import): """ + Provides a dialog for importing Trajectory or Gravity data. + This dialog computes and displays some basic file information, + and provides a mechanism for previewing and adjusting column headers via + the EditImportView dialog class. Parameters ---------- @@ -340,65 +373,118 @@ class AdvancedImport(BaseDialog, advanced_import): flight : Flight Currently selected flight when Import button was clicked dtype : dgp.lib.enums.DataTypes - + Data type to import using this dialog, GRAVITY or TRAJECTORY parent : QWidget Parent Widget """ - def __init__(self, project, flight, dtype=None, parent=None): + data = QtCore.pyqtSignal(prj.Flight, DataSource) + + def __init__(self, project, flight, dtype=enums.DataTypes.GRAVITY, + parent=None): super().__init__(msg_recvr='label_msg', parent=parent) self.setupUi(self) self._preview_limit = 5 self._path = None self._flight = flight - self._cols = None - if dtype is None: - self._dtype = enums.DataTypes.GRAVITY - else: - self._dtype = dtype - print("Initialized with dtype: ", self._dtype) + self._custom_cols = None + self._dtype = dtype self._file_filter = "(*.csv *.dat *.txt)" self._base_dir = '.' self._sample = None self.setWindowTitle("Import {}".format(dtype.name.capitalize())) + # Establish field enum based on dtype + self._fields = {enums.DataTypes.GRAVITY: enums.GravityTypes, + enums.DataTypes.TRAJECTORY: enums.GPSFields}[dtype] + for flt in project.flights: self.combo_flights.addItem(flt.name, flt) - # scroll to this item if it matches self.flight if flt == self._flight: self.combo_flights.setCurrentIndex(self.combo_flights.count()-1) + for fmt in self._fields: + self._fmt_picker.addItem(str(fmt.name).upper(), fmt) + # Signals/Slots self.btn_browse.clicked.connect(self.browse) self.btn_edit_cols.clicked.connect(self._edit_cols) + self._edit_dlg = EditImportView(self._fields, parent=self) + + # Launch browse dialog immediately self.browse() @property - def content(self) -> (str, str, List, prj.Flight): - return self._path, self._dtype.name, self._cols, self._flight + def _fmt_picker(self) -> QtWidgets.QComboBox: + return self.cb_data_fmt + + @property + def flight(self): + return self._flight @property def path(self): return self._path - # TODO: Data verification (basic check that values exist?) def accept(self) -> None: if self._path is None: self.show_message("Path cannot be empty", 'Path*') + return + + # Process accept and run LoadFile threader + self._flight = self.combo_flights.currentData() + progress = QtWidgets.QProgressDialog( + 'Loading {pth}'.format(pth=self._path), None, 0, 0, self.parent(), + QtCore.Qt.WindowSystemMenuHint | QtCore.Qt.WindowTitleHint | + QtCore.Qt.WindowMinimizeButtonHint) + progress.setWindowTitle("Loading") + + if self._custom_cols is not None: + cols = self._custom_cols + else: + cols = self._fmt_picker.currentData().value + + if self._edit_dlg.skip_row: + skip = 1 else: - self._flight = self.combo_flights.currentData() - super().accept() - return + skip = None + + ld = qloader.LoadFile(self._path, self._dtype, cols, + parent=self, skiprow=skip) + ld.data.connect(lambda ds: self.data.emit(self._flight, ds)) + ld.error.connect(lambda x: progress.close()) + ld.error.connect(self._import_error) + ld.start() + + progress.show() + progress.setValue(1) + super().accept() + + def _import_error(self, error: bool): + if not error: + return + self.show_error("Failed to import datafile. See log trace.") def _edit_cols(self): + """Launches the EditImportView dialog to allow user to preview and + edit column name/position as necesarry. + + Notes + ----- + To simplify state handling & continuity (dialog should preserve options + and state through multiple uses), an EditImportView dialog is + initialized in the AdvancedImport constructor, to be reused through + the life of this dialog. + + Before re-launching the EIV dialog a call to set_state must be made + to update the data displayed within. + """ if self.path is None: - # This shouldn't happen as the button should be disabled - self.show_message("Path cannot be empty", 'Path*', - log=logging.WARNING) return + # Generate sample set of data for Column editor data = [] with open(self.path, mode='r') as fd: for i, line in enumerate(fd): @@ -407,11 +493,15 @@ def _edit_cols(self): if i == self._preview_limit: break - dlg = EditImportView(data, dtype=self._dtype, parent=self) + # Update the edit dialog with current data + self._edit_dlg.set_state(data, self._fmt_picker.currentData()) + if self._edit_dlg.exec_(): + selected_enum = self._edit_dlg.field_enum + idx = self._fmt_picker.findData(selected_enum, role=Qt.Qt.UserRole) + if idx != -1: + self._fmt_picker.setCurrentIndex(idx) - if dlg.exec_(): - self._cols = dlg.columns - self.show_message("Data Columns Updated", msg_color='Brown') + self.show_message("Data Columns Updated", msg_color='Green') def browse(self): title = "Select {typ} Data File".format(typ=self._dtype.name) @@ -438,9 +528,7 @@ def browse(self): for line in fd: count += 1 last_line = line - data.append(last_line) - print(data) col_count = len(data[0].split(',')) self.field_col_count.setText(str(col_count)) @@ -448,16 +536,17 @@ def browse(self): sbuf.writelines(data) sbuf.seek(0) - df = None - if self._dtype == enums.DataTypes.GRAVITY: - df = gi.read_at1a(sbuf) - elif self._dtype == enums.DataTypes.TRAJECTORY: - # TODO: Implement this - pass - # df = ti.import_trajectory(sbuf, ) - - print("Ingested df: ") - if df is not None: print(df) + # Experimental - Read portion of data to get timestamps + # df = None + # if self._dtype == enums.DataTypes.GRAVITY: + # try: + # df = gi.read_at1a(sbuf) + # except: + # print("Error ingesting sample data") + # elif self._dtype == enums.DataTypes.TRAJECTORY: + # # TODO: Implement this + # pass + # # df = ti.import_trajectory(sbuf, ) self.field_line_count.setText("{}".format(count)) self.btn_edit_cols.setEnabled(True) diff --git a/dgp/gui/loader.py b/dgp/gui/loader.py index 0d981e1..a0367b6 100644 --- a/dgp/gui/loader.py +++ b/dgp/gui/loader.py @@ -1,15 +1,19 @@ # coding: utf-8 import pathlib +import logging from typing import List from PyQt5.QtCore import pyqtSignal, QThread, pyqtBoundSignal import dgp.lib.types as types import dgp.lib.datamanager as dm +from dgp.lib.enums import DataTypes from dgp.lib.gravity_ingestor import read_at1a from dgp.lib.trajectory_ingestor import import_trajectory +_log = logging.getLogger(__name__) + class LoadFile(QThread): """ @@ -18,32 +22,44 @@ class LoadFile(QThread): Upon import the data is exported to an HDF5 store for further use by the application. """ - progress = pyqtSignal(int) # type: pyqtBoundSignal - loaded = pyqtSignal() # type: pyqtBoundSignal + error = pyqtSignal(bool) data = pyqtSignal(types.DataSource) # type: pyqtBoundSignal - def __init__(self, path: pathlib.Path, datatype: str, fields: List=None, + def __init__(self, path: pathlib.Path, dtype: DataTypes, fields: List=None, parent=None, **kwargs): super().__init__(parent) self._path = pathlib.Path(path) - self._dtype = datatype - self._functor = {'gravity': read_at1a, - 'gps': import_trajectory}.get(datatype, None) + self._dtype = dtype self._fields = fields + self._skiprow = kwargs.get('skiprow', None) + print("Loader has skiprow: ", self._skiprow) def run(self): """Executed on thread.start(), performs long running data load action""" - if self._dtype == 'gps': - df = self._load_gps() + if self._dtype == DataTypes.TRAJECTORY: + try: + df = self._load_gps() + except (ValueError, Exception): + _log.exception("Exception loading Trajectory data") + self.error.emit(True) + return + elif self._dtype == DataTypes.GRAVITY: + try: + df = self._load_gravity() + except (ValueError, Exception): + _log.exception("Exception loading Gravity data") + self.error.emit(True) + return else: - df = self._load_gravity() - self.progress.emit(1) + _log.warning("Invalid datatype set for LoadFile run()") + self.error.emit(True) + return # Export data to HDF5, get UID reference to pass along uid = dm.get_manager().save_data(dm.HDF5, df) cols = [col for col in df.keys()] - dsrc = types.DataSource(uid, self._path, cols, self._dtype) + dsrc = types.DataSource(uid, self._path.name, cols, self._dtype) self.data.emit(dsrc) - self.loaded.emit() + self.error.emit(False) def _load_gps(self): if self._fields is not None: @@ -51,9 +67,12 @@ def _load_gps(self): else: fields = ['mdy', 'hms', 'latitude', 'longitude', 'ortho_ht', 'ell_ht', 'num_sats', 'pdop'] - return import_trajectory(self._path, columns=fields, skiprows=1, + return import_trajectory(self._path, + columns=fields, + skiprows=self._skiprow, timeformat='hms') def _load_gravity(self): """Load gravity data using AT1A format""" - return read_at1a(self._path, fields=self._fields) + return read_at1a(self._path, fields=self._fields, + skiprows=self._skiprow) diff --git a/dgp/gui/main.py b/dgp/gui/main.py index 5aa9b86..130387e 100644 --- a/dgp/gui/main.py +++ b/dgp/gui/main.py @@ -250,6 +250,7 @@ def _update_context_tree(self, model): self._context_tree.setModel(model) self._context_tree.expandAll() + @autosave def data_added(self, flight: prj.Flight, src: types.DataSource) -> None: """ Register a new data file with a flight and updates the Flight UI @@ -285,8 +286,8 @@ def progress_dialog(self, title, start=0, stop=1): dialog.setValue(0) return dialog - def import_data(self, path: pathlib.Path, dtype: str, flight: prj.Flight, - fields=None): + def import_data(self, path: pathlib.Path, dtype: enums.DataTypes, + flight: prj.Flight, fields=None): """ Load data of dtype from path, using a threaded loader class Upon load the data file should be registered with the specified flight. @@ -302,8 +303,10 @@ def import_data(self, path: pathlib.Path, dtype: str, flight: prj.Flight, loader.data.connect(lambda ds: self.data_added(flight, ds)) loader.progress.connect(progress.setValue) - loader.loaded.connect(self.save_project) - loader.loaded.connect(progress.close) + loader.error.connect(lambda x: progress.close()) + loader.error.connect(lambda x: self.save_project()) + # loader.loaded.connect(self.save_project) + # loader.loaded.connect(progress.close) loader.start() @@ -322,14 +325,13 @@ def save_project(self) -> None: # Project dialog functions ##### - def import_data_dialog(self, dtype=None) -> None: + def import_data_dialog(self, dtype=None) -> bool: """Load data file (GPS or Gravity) using a background Thread, then hand it off to the project.""" - dialog = AdvancedImport(self.project, self.current_flight, dtype=dtype) - if dialog.exec_(): - path, dtype, fields, flight = dialog.content - self.import_data(path, dtype, flight, fields=fields) - return + dialog = AdvancedImport(self.project, self.current_flight, + dtype=dtype, parent=self) + dialog.data.connect(lambda flt, ds: self.data_added(flt, ds)) + return dialog.exec_() def new_project_dialog(self) -> QMainWindow: new_window = True @@ -421,6 +423,13 @@ def contextMenuEvent(self, event: QtGui.QContextMenuEvent, *args, **kwargs): info_action.triggered.connect(info_slot) plot_action = QAction("Plot in new window") plot_action.triggered.connect(plot_slot) + if isinstance(context_focus, types.DataSource): + data_action = QAction("Set Active Data File") + # TODO: Work on this later, it breaks plotter currently + # data_action.triggered.connect( + # lambda item: context_focus.__setattr__('active', True) + # ) + menu.addAction(data_action) menu.addAction(info_action) menu.addAction(plot_action) @@ -434,6 +443,11 @@ def _info_action(self, item): if not (isinstance(item, prj.Flight) or isinstance(item, prj.GravityProject)): return + for name, attr in item.__class__.__dict__.items(): + if isinstance(attr, property): + print("Have property bound to {}".format(name)) + print("Value is: {}".format(item.__getattribute__(name))) + model = TableModel(['Key', 'Value']) model.set_object(item) dialog = InfoDialog(model, parent=self) diff --git a/dgp/gui/ui/advanced_data_import.ui b/dgp/gui/ui/advanced_data_import.ui index d573852..8a602c7 100644 --- a/dgp/gui/ui/advanced_data_import.ui +++ b/dgp/gui/ui/advanced_data_import.ui @@ -56,6 +56,9 @@ Path* + + line_path + @@ -101,6 +104,9 @@ Flight + + combo_flights + @@ -118,6 +124,9 @@ Meter + + combo_meters + @@ -168,7 +177,7 @@ - + 5 @@ -186,33 +195,29 @@ 2 - - - - - - false + + dte_data_end - + Line Count - - + + - 0 Mib + 0 - - + + - 0 + 0 Mib @@ -226,8 +231,22 @@ + + + + false + + + + + + + Column Count: + + + - + false @@ -247,6 +266,9 @@ 2 + + dte_data_start + @@ -263,13 +285,6 @@ - - - - Column Count: - - - @@ -286,28 +301,57 @@ - - - - Qt::Vertical - - - - 20 - 40 - - - - + + + + Qt::Vertical + + + + 20 + 40 + + + + - + + + + 0 + 0 + + + + Column Format: + + + cb_data_fmt + + + + + + + + 0 + 0 + + + + + + Qt::Horizontal + + QSizePolicy::Maximum + 40 @@ -398,8 +442,8 @@ accept() - 248 - 254 + 253 + 408 157 @@ -414,8 +458,8 @@ reject() - 316 - 260 + 321 + 408 286 @@ -424,7 +468,4 @@ - - - diff --git a/dgp/gui/ui/edit_import_view.ui b/dgp/gui/ui/edit_import_view.ui index 1248f99..7205059 100644 --- a/dgp/gui/ui/edit_import_view.ui +++ b/dgp/gui/ui/edit_import_view.ui @@ -17,7 +17,7 @@ - Dialog + Data Preview true @@ -35,6 +35,16 @@ + + + + Autosize Column Widths + + + <> + + + @@ -72,7 +82,10 @@ QAbstractItemView::AnyKeyPressed|QAbstractItemView::DoubleClicked|QAbstractItemView::EditKeyPressed|QAbstractItemView::SelectedClicked - false + true + + + true @@ -175,5 +188,21 @@ + + btn_autosize + clicked() + table_col_edit + resizeColumnsToContents() + + + 24 + 38 + + + 151 + 146 + + + diff --git a/dgp/lib/enums.py b/dgp/lib/enums.py index b36a3b8..98c8dd8 100644 --- a/dgp/lib/enums.py +++ b/dgp/lib/enums.py @@ -49,13 +49,20 @@ class MeterTypes(enum.Enum): class DataTypes(enum.Enum): """Gravity/Trajectory Data Types""" - # TODO: Add different GPS format enums GRAVITY = 'gravity' TRAJECTORY = 'trajectory' - AT1A = 'at1a' - AT1M = 'at1m' - ZLS = 'zls' - TAGS = 'tags' + + +class GravityTypes(enum.Enum): + # TODO: add set of fields specific to each dtype + AT1A = ('gravity', 'long', 'cross', 'beam', 'temp', 'status', 'pressure', + 'Etemp', 'GPSweek', 'GPSweekseconds') + AT1M = ('at1m',) + ZLS = ('line_name', 'year', 'day', 'hour', 'minute', 'second', 'sensor', + 'spring_tension', 'cross_coupling', 'raw_beam', 'vcc', 'al', 'ax', + 've2', 'ax2', 'xacc2', 'lacc2', 'xacc', 'lacc', 'par_port', + 'platform_period') + TAGS = ('tags', ) class GPSFields(enum.Enum): diff --git a/dgp/lib/gravity_ingestor.py b/dgp/lib/gravity_ingestor.py index 59484a0..8443cda 100644 --- a/dgp/lib/gravity_ingestor.py +++ b/dgp/lib/gravity_ingestor.py @@ -69,24 +69,28 @@ def _unpack_bits(n): return df -def read_at1a(path, fields=None, fill_with_nans=True, interp=False): +def read_at1a(path, fields=None, fill_with_nans=True, interp=False, + skiprows=None): """ Read and parse gravity data file from DGS AT1A (Airborne) meter. CSV Columns: - gravity, long, cross, beam, temp, status, pressure, Etemp, GPSweek, GPSweekseconds + gravity, long, cross, beam, temp, status, pressure, Etemp, GPSweek, + GPSweekseconds Parameters ---------- path : str Filesystem path to gravity data file fields: List - Optional List of fields to specify when importing the data, otherwise defaults are assumed + Optional List of fields to specify when importing the data, otherwise + defaults are assumed. This can be used if the data file has fields in an abnormal order fill_with_nans : boolean, default True Fills time gaps with NaNs for all fields interp : boolean, default False Interpolate all NaNs for fields of type numpy.number + skiprows Returns ------- @@ -97,7 +101,8 @@ def read_at1a(path, fields=None, fill_with_nans=True, interp=False): fields = ['gravity', 'long', 'cross', 'beam', 'temp', 'status', 'pressure', 'Etemp', 'GPSweek', 'GPSweekseconds'] - df = pd.read_csv(path, header=None, engine='c', na_filter=False) + df = pd.read_csv(path, header=None, engine='c', na_filter=False, + skiprows=skiprows) df.columns = fields # expand status field From 1e606d87c08784654d1e9f660fe61211124a33fc Mon Sep 17 00:00:00 2001 From: bradyzp Date: Fri, 29 Dec 2017 17:18:39 +0100 Subject: [PATCH 037/236] ENH: Performance enhancement on window resize. ENH: Added logic to lib/plotter and gui/widgets to improve GUI responsiveness when the user drag-resizes the main window, or panels within the main window. This is accomplished by hidding the central plot widget when a resizeEvent has been triggered, then un-hiding the widget after a short timeout (200ms). --- dgp/gui/widgets.py | 32 ++++++++++++-------- dgp/lib/plotter.py | 75 ++++++++++++++++++++++++++++++---------------- 2 files changed, 70 insertions(+), 37 deletions(-) diff --git a/dgp/gui/widgets.py b/dgp/gui/widgets.py index b78f052..3402209 100644 --- a/dgp/gui/widgets.py +++ b/dgp/gui/widgets.py @@ -41,9 +41,16 @@ def __init__(self, label: str, parent=None, **kwargs): super().__init__(parent, **kwargs) self.label = label self._uid = gen_uuid('ww') - # self._layout = layout self._context_model = None - # self.setLayout(self._layout) + self._plot = None + + @property + def plot(self) -> LineGrabPlot: + return self._plot + + @plot.setter + def plot(self, value): + self._plot = value def data_modified(self, action: str, uid: str): pass @@ -70,12 +77,12 @@ def __init__(self, flight: Flight, label: str, axes: int, **kwargs): self.log = logging.getLogger('PlotTab') vlayout = QVBoxLayout() - self._plot = LineGrabPlot(flight, axes) - self._plot.line_changed.connect(self._on_modified_line) + self.plot = LineGrabPlot(flight, axes) + self.plot.line_changed.connect(self._on_modified_line) self._flight = flight - vlayout.addWidget(self._plot) - vlayout.addWidget(self._plot.get_toolbar()) + vlayout.addWidget(self.plot) + vlayout.addWidget(self.plot.get_toolbar(), alignment=Qt.AlignBottom) self.setLayout(vlayout) self._apply_state() self._init_model() @@ -87,18 +94,18 @@ def _apply_state(self) -> None: state = self._flight.get_plot_state() draw = False for dc in state: - self._plot.add_series(dc, dc.plotted) + self.plot.add_series(dc, dc.plotted) for line in self._flight.lines: - self._plot.add_patch(line.start, line.stop, line.uid, + self.plot.add_patch(line.start, line.stop, line.uid, label=line.label) draw = True if draw: - self._plot.draw() + self.plot.draw() def _init_model(self): channels = self._flight.channels - plot_model = models.ChannelListModel(channels, len(self._plot)) + plot_model = models.ChannelListModel(channels, len(self.plot)) plot_model.plotOverflow.connect(self._too_many_children) plot_model.channelChanged.connect(self._on_channel_changed) plot_model.update() @@ -138,10 +145,11 @@ def _on_channel_changed(self, new: int, channel: types.DataChannel): self.log.info("Channel change request: new index: {}".format(new)) self.log.debug("Moving series on plot") - self._plot.remove_series(channel) + self.plot.remove_series(channel) if new != -1: - self._plot.add_series(channel, new) + self.plot.add_series(channel, new) else: + pass print("destination is -1") self.model.update() diff --git a/dgp/lib/plotter.py b/dgp/lib/plotter.py index e7d6d4e..32baa75 100644 --- a/dgp/lib/plotter.py +++ b/dgp/lib/plotter.py @@ -14,6 +14,7 @@ from PyQt5.QtCore import pyqtSignal, QMimeData from PyQt5.QtGui import QCursor, QDropEvent, QDragEnterEvent, QDragMoveEvent import PyQt5.QtCore as QtCore +import PyQt5.QtWidgets as QtWidgets from matplotlib.backends.backend_qt5agg import ( FigureCanvasQTAgg as FigureCanvas, NavigationToolbar2QT as NavigationToolbar) from matplotlib.figure import Figure @@ -27,7 +28,6 @@ import numpy as np from dgp.lib.project import Flight -from dgp.gui.dialogs import SetLineLabelDialog import dgp.lib.types as types @@ -315,7 +315,7 @@ class PatchGroup: """ Contain related patches that are cloned across multiple sub-plots """ - def __init__(self, label: str=None, uid=None, parent=None): + def __init__(self, label: str='', uid=None, parent=None): self.parent = parent # type: AxesGroup if uid is not None: self.uid = uid @@ -721,14 +721,34 @@ def __init__(self, flight: Flight, rows: int=1, title=None, parent=None): self._pop_menu = QMenu(self) self._pop_menu.addAction( QAction('Remove', self, triggered=self._remove_patch)) - # self._pop_menu.addAction(QAction('Set Label', self, - # triggered=self._label_patch)) self._pop_menu.addAction( QAction('Set Label', self, triggered=self._label_patch)) + self._rs_timer = QtCore.QTimer(self) + self._rs_timer.timeout.connect(self.resizeDone) + self._toolbar = None + def __len__(self): return len(self._plots) + def resizeEvent(self, event): + """ + Here we override the resizeEvent handler in order to hide the plot + and toolbar widgets when the window is being resized (for performance + reasons). + self._rs_timer is started with the specified timeout (in ms), at which + time the widgets are shown again (resizeDone method). Thus if a user is + dragging the window size handle, and stops for 250ms, the contents + will be re-drawn, then rehidden again when the user continues resizing. + """ + self._rs_timer.start(200) + self.hide() + super().resizeEvent(event) + + def resizeDone(self): + self._rs_timer.stop() + self.show() + @property def axes(self): return [ax for ax in self._plots.values()] @@ -806,22 +826,25 @@ def _label_patch(self): """PyQtSlot: Called by QAction menu item to add a label to the currently selected PatchGroup""" - if self.ax_grp.active is not None: - pg = self.ax_grp.active - if pg.label is not None: - dialog = SetLineLabelDialog(pg.label) - else: - dialog = SetLineLabelDialog(None) - if dialog.exec_(): - label = dialog.label_text - else: - return + if self.ax_grp.active is None: + return - pg.set_label(label) - update = LineUpdate(flight_id=self._flight.uid, action='modify', - uid=pg.uid, start=pg.start(), stop=pg.stop(), - label=pg.label) - self.line_changed.emit(update) + pg = self.ax_grp.active + # Replace custom SetLineLabelDialog with builtin QInputDialog + text, ok = QtWidgets.QInputDialog.getText(self, + "Enter Label", + "Line Label:", + text=pg.label) + if not ok: + self.ax_grp.deselect() + return + + label = str(text).strip() + pg.set_label(label) + update = LineUpdate(flight_id=self._flight.uid, action='modify', + uid=pg.uid, start=pg.start(), stop=pg.stop(), + label=pg.label) + self.line_changed.emit(update) self.ax_grp.deselect() self.draw() return @@ -1160,9 +1183,11 @@ def get_toolbar(self, parent=None) -> QToolBar: QtWidgets.QToolBar Matplotlib Qt Toolbar used to control this plot instance """ - toolbar = NavigationToolbar(self, parent=parent) - - toolbar.actions()[0].triggered.connect(self.home) - toolbar.actions()[4].triggered.connect(self.toggle_pan) - toolbar.actions()[5].triggered.connect(self.toggle_zoom) - return toolbar + if self._toolbar is None: + toolbar = NavigationToolbar(self, parent=parent) + + toolbar.actions()[0].triggered.connect(self.home) + toolbar.actions()[4].triggered.connect(self.toggle_pan) + toolbar.actions()[5].triggered.connect(self.toggle_zoom) + self._toolbar = toolbar + return self._toolbar From 1ee22dba0b976b82ab308b800badf391ccb8827f Mon Sep 17 00:00:00 2001 From: bradyzp Date: Fri, 29 Dec 2017 17:22:28 +0100 Subject: [PATCH 038/236] CLN: Code cleanup and minor refactoring. CLN: Removed deprecated dialog classes from gui/dialogs (ImportData and SetLineLabelDialog) Reformatted .gitignore and grouped into sections. Added some type-hinting in lib/types and some properties for future use. --- .gitignore | 13 ++++- dgp/gui/dialogs.py | 116 +-------------------------------------------- dgp/gui/models.py | 10 ++-- dgp/lib/project.py | 15 +++--- dgp/lib/types.py | 45 ++++++++++++++++-- 5 files changed, 69 insertions(+), 130 deletions(-) diff --git a/.gitignore b/.gitignore index 80353b2..0076095 100644 --- a/.gitignore +++ b/.gitignore @@ -1,8 +1,17 @@ +# Ignored file extensions *.idea +*.pdf *.pyc *.pyo +*.coverage +*.vsdx + +# Ignored directories __pycache__/ scratch/ -*.pdf venv/ -*.coverage \ No newline at end of file +docs/build/ + +# Specific Directives +dgp/gui/ui/*.py +examples/local* diff --git a/dgp/gui/dialogs.py b/dgp/gui/dialogs.py index 8e280bf..0a2911e 100644 --- a/dgp/gui/dialogs.py +++ b/dgp/gui/dialogs.py @@ -146,93 +146,9 @@ def validate_not_empty(self, terminator='*'): """ -class ImportData(QtWidgets.QDialog, data_dialog): - """ - Rationalization: - This dialog will be used to import gravity and/or GPS data. - A drop down box will be populated with the available project flights into - which the data will be associated - User will specify wheter the data is a gravity or gps file (TODO: maybe we - can programatically determine the type) - User will specify file path - - This class does not handle the actual loading of data, it only sets up the - parameters (path, type etc) for the calling class to do the loading. - """ - def __init__(self, project: prj.AirborneProject=None, flight: - prj.Flight=None, *args): - super().__init__(*args) - self.setupUi(self) - - # Setup button actions - self.button_browse.clicked.connect(self.browse_file) - self.buttonBox.accepted.connect(self.accept) - - dgsico = Qt.QIcon(':images/assets/geoid_icon.png') - - self.setWindowIcon(dgsico) - self.path = None - self.dtype = None - self.flight = flight - - for flight in project.flights: - self.combo_flights.addItem(flight.name, flight.uid) - # scroll to this item if it matches self.flight - if flight == self.flight: - self.combo_flights.setCurrentIndex(self.combo_flights.count()-1) - for meter in project.meters: - self.combo_meters.addItem(meter.name) - - self.file_model = Qt.QFileSystemModel() - self.init_tree() - - def init_tree(self): - self.file_model.setRootPath(os.getcwd()) - self.file_model.setNameFilters(["*.csv", "*.dat"]) - - self.tree_directory.setModel(self.file_model) - self.tree_directory.scrollTo(self.file_model.index(os.getcwd())) - - self.tree_directory.resizeColumnToContents(0) - for i in range(1, 4): # Remove size/date/type columns from view - self.tree_directory.hideColumn(i) - self.tree_directory.clicked.connect(self.select_tree_file) - - def select_tree_file(self, index): - path = pathlib.Path(self.file_model.filePath(index)) - # TODO: Verify extensions for selected files before setting below - if path.is_file(): - self.field_path.setText(str(path.resolve())) - self.path = path - else: - return - - def browse_file(self): - path, _ = QtWidgets.QFileDialog.getOpenFileName( - self, "Select Data File", os.getcwd(), "Data (*.dat *.csv)") - if path: - self.path = pathlib.Path(path) - self.field_path.setText(self.path.name) - index = self.file_model.index(str(self.path.resolve())) - self.tree_directory.scrollTo(self.file_model.index( - str(self.path.resolve()))) - self.tree_directory.setCurrentIndex(index) - - def accept(self): - # '&' is used to set text hints in the GUI - self.dtype = {'G&PS Data': 'gps', '&Gravity Data': 'gravity'}.get( - self.group_radiotype.checkedButton().text(), 'gravity') - self.flight = self.combo_flights.currentData() - if self.path is None: - return - super().accept() - - @property - def content(self) -> (pathlib.Path, str, prj.Flight): - return self.path, self.dtype, self.flight - - class EditImportView(BaseDialog, edit_view): + # TODO: Provide method of saving custom changes to columns between + # re-opening of this dialog. Perhaps under custom combo-box item. """ Take lines of data with corresponding fields and populate custom Table Model Fields can be exchanged via a custom Selection Delegate, which provides a @@ -711,31 +627,3 @@ def setModel(self, model: QtCore.QAbstractTableModel): def accept(self): self.updates = self._model.updates super().accept() - - -class SetLineLabelDialog(QtWidgets.QDialog, line_label_dialog): - def __init__(self, label): - super().__init__() - self.setupUi(self) - - self._label = label - - if self._label is not None: - self.label_txt.setText(self._label) - self.button_box.accepted.connect(self.accept) - self.button_box.rejected.connect(self.reject) - - def accept(self): - text = self.label_txt.text().strip() - if text: - self._label = text - else: - self._label = None - super().accept() - - def reject(self): - super().reject() - - @property - def label_text(self): - return self._label diff --git a/dgp/gui/models.py b/dgp/gui/models.py index c580c6e..5d1f090 100644 --- a/dgp/gui/models.py +++ b/dgp/gui/models.py @@ -130,6 +130,7 @@ def __init__(self, data, parent=None): super().__init__(parent=parent) self._data = data + self._header_index = True def header_row(self): return self._data[0] @@ -176,15 +177,17 @@ def flags(self, index: QModelIndex): def headerData(self, section, orientation, role=None): if role == QtCore.Qt.DisplayRole and orientation == QtCore.Qt.Horizontal: + if self._header_index: + return section return QtCore.QVariant() # Required implementations of super class for editable table - def setData(self, index: QtCore.QModelIndex, value, role=None): + def setData(self, index: QtCore.QModelIndex, value, role=QtCore.Qt.EditRole): """Basic implementation of editable model. This doesn't propagate the changes to the underlying object upon which the model was based though (yet)""" - if index.isValid() and role == QtCore.Qt.ItemIsEditable: + if index.isValid() and role == QtCore.Qt.EditRole: self._data[index.row()][index.column()] = value self.dataChanged.emit(index, index) return True @@ -411,7 +414,7 @@ def setEditorData(self, editor: QWidget, index: QModelIndex) -> None: self.options = {model.data(model.index(row, c), QtDataRoles.EditRole) for c in range(model.columnCount())} - for choice in sorted(self.options): + for choice in self.options: editor.addItem(choice) index = editor.findText(value, flags=Qt.Qt.MatchExactly) @@ -501,6 +504,7 @@ def clear(self): self.update() def set_channels(self, channels: list): + print("Trying to set CLM channels") self.clear() self.channels = self._build_model(channels) self.update() diff --git a/dgp/lib/project.py b/dgp/lib/project.py index 6d9f27f..4fb6e69 100644 --- a/dgp/lib/project.py +++ b/dgp/lib/project.py @@ -3,7 +3,6 @@ import pickle import pathlib import logging -from typing import Union, Type from datetime import datetime from pandas import DataFrame @@ -11,6 +10,7 @@ from dgp.gui.qtenum import QtItemFlags, QtDataRoles from dgp.lib.meterconfig import MeterConfig, AT1Meter from dgp.lib.etc import gen_uuid +import dgp.lib.enums as enums import dgp.lib.types as types import dgp.lib.datamanager as dm @@ -324,8 +324,6 @@ def __init__(self, project: GravityProject, name: str, self._data_uid = self.append_child(Container(ctype=types.DataSource, parent=self, name='Data Files')) - # self.append_child(self._lines) - # self.append_child(self._data) def data(self, role): if role == QtDataRoles.ToolTipRole: @@ -344,6 +342,8 @@ def channels(self) -> list: """Return data channels as list of DataChannel objects""" rv = [] for source in self.get_child(self._data_uid): # type: types.DataSource + # TODO: Work on active sources later + # if source is None or not source.active: rv.extend(source.get_channels()) return rv @@ -355,9 +355,12 @@ def register_data(self, datasrc: types.DataSource): """Register a data file for use by this Flight""" _log.info("Flight {} registering data source: {} UID: {}".format( self.name, datasrc.filename, datasrc.uid)) + datasrc.flight = self self.get_child(self._data_uid).append_child(datasrc) - # self._data.append_child(datasrc) - # TODO: Set channels within source to plotted if in default plot dict + # TODO: Hold off on this - breaks plot when we change source + # print("Setting new Dsrc to active") + # datasrc.active = True + # self.update() def add_line(self, start: datetime, stop: datetime, uid=None): """Add a flight line to the flight by start/stop index and sequence @@ -415,7 +418,7 @@ class Container(types.TreeItem): # Arbitrary list of permitted types ctypes = {Flight, MeterConfig, types.FlightLine, types.DataSource} - def __init__(self, ctype, parent, *args, **kwargs): + def __init__(self, ctype, parent=None, **kwargs): """ Defines a generic container designed for use with models.ProjectModel, implementing the required functions to display and contain child diff --git a/dgp/lib/types.py b/dgp/lib/types.py index fca259a..6fa3c6e 100644 --- a/dgp/lib/types.py +++ b/dgp/lib/types.py @@ -3,13 +3,14 @@ import json from abc import ABCMeta, abstractmethod from collections import namedtuple -from typing import Union, Generator, List +from typing import Union, Generator, List, Iterable from pandas import Series, DataFrame from dgp.lib.etc import gen_uuid from dgp.gui.qtenum import QtItemFlags, QtDataRoles import dgp.lib.datamanager as dm +import dgp.lib.enums as enums """ Dynamic Gravity Processor (DGP) :: lib/types.py @@ -60,7 +61,7 @@ def parent(self, value): @property @abstractmethod - def children(self): + def children(self) -> Iterable['AbstractTreeItem']: pass @abstractmethod @@ -139,7 +140,7 @@ def parent(self, value: AbstractTreeItem): return assert isinstance(value, AbstractTreeItem) self._parent = value - self.update() + # self.update() @property def children(self) -> Generator[AbstractTreeItem, None, None]: @@ -439,13 +440,43 @@ class DataSource(BaseTreeItem): Data type (i.e. GPS/Gravity) of the data pointed to by this object. """ - def __init__(self, uid, filename: str, fields: List[str], dtype: str): + def __init__(self, uid, filename: str, fields: List[str], + dtype: enums.DataTypes): """Create a DataSource item with UID matching the managed file UID that it points to.""" super().__init__(uid) self.filename = filename self.fields = fields self.dtype = dtype + self._flight = None + self._active = False + + @property + def flight(self): + return self._flight + + @flight.setter + def flight(self, value): + self._flight = value + + @property + def active(self): + return self._active + + @active.setter + def active(self, value: bool): + """Iterate through siblings and deactivate any other sibling of same + dtype if setting this sibling to active.""" + print("Trying to set self to active") + if value: + for child in self.parent.children: # type: DataSource + if child is self: + continue + if child.dtype == self.dtype and child.active: + child.active = False + self._active = True + else: + self._active = False def get_channels(self) -> List['DataChannel']: """ @@ -478,10 +509,12 @@ def load(self, field=None) -> Union[Series, DataFrame]: def data(self, role: QtDataRoles): if role == QtDataRoles.DisplayRole: - return "{dtype}: {fname}".format(dtype=self.dtype, + return "{dtype}: {fname}".format(dtype=self.dtype.name.capitalize(), fname=self.filename) if role == QtDataRoles.ToolTipRole: return "UID: {}".format(self.uid) + if role == QtDataRoles.DecorationRole and self.active: + return ':images/assets/geoid_icon.png' def children(self): return [] @@ -531,6 +564,8 @@ def data(self, role: QtDataRoles): return self.label if role == QtDataRoles.UserRole: return self.field + if role == QtDataRoles.ToolTipRole: + return self._source.filename return None def flags(self): From 72f254832f3e9cb0dc3b0780e0e954a05459f389 Mon Sep 17 00:00:00 2001 From: bradyzp Date: Sun, 31 Dec 2017 09:45:15 +0100 Subject: [PATCH 039/236] CLN: Reorganized GUI resources.rc Reorganized Qt Resources, added some new icons and updated QRC paths in code. --- dgp/gui/dialogs.py | 7 +- dgp/gui/main.py | 4 +- dgp/gui/ui/add_flight_dialog.ui | 6 +- dgp/gui/ui/advanced_data_import.ui | 8 +- dgp/gui/ui/edit_import_view.ui | 10 +- dgp/gui/ui/main_window.ui | 75 +- dgp/gui/ui/project_dialog.ui | 6 +- dgp/gui/ui/resources.qrc | 14 - dgp/gui/ui/resources/AutosizeStretch_16x.png | Bin 0 -> 356 bytes dgp/gui/ui/resources/AutosizeStretch_16x.svg | 1 + dgp/gui/ui/resources/GeoLocation_16x.svg | 1 + dgp/gui/ui/resources/apple_grav.svg | 5 + .../ui/{assets => resources}/boat_icon.png | Bin dgp/gui/ui/{assets => resources}/dgs_icon.xpm | 0 .../ui/{assets => resources}/folder_open.png | Bin .../geoid_icon.png => resources/geoid.png} | Bin dgp/gui/ui/resources/gps_icon.png | Bin 0 -> 819 bytes dgp/gui/ui/resources/grav_icon.png | Bin 0 -> 607 bytes .../ui/{assets => resources}/meter_config.png | Bin .../new_file.png} | Bin .../plane_icon.png} | Bin dgp/gui/ui/resources/resources.qrc | 19 + .../ui/{assets => resources}/save_project.png | Bin dgp/gui/ui/resources/tree-view/1x/Asset 1.png | Bin 0 -> 283 bytes .../ui/resources/tree-view/2x/Asset 1@2x.png | Bin 0 -> 429 bytes .../tree-view/2x/chevron-down@2x.png | Bin 0 -> 429 bytes .../tree-view/2x/chevron-right@2x.png | Bin 0 -> 366 bytes .../tree-view/3x/chevron-down@3x.png | Bin 0 -> 590 bytes .../tree-view/3x/chevron-right@3x.png | Bin 0 -> 457 bytes .../tree-view/ExpandChevronDown_16x.png | Bin 0 -> 342 bytes .../tree-view/ExpandChevronDown_16x.svg | 1 + .../tree-view/ExpandChevronRight_16x.png | Bin 0 -> 294 bytes .../tree-view/ExpandChevronRight_16x.svg | 1 + .../tree-view/ExpandChevronRight_lg_16x.png | Bin 0 -> 247 bytes .../tree-view/ExpandChevronRight_lg_16x.svg | 1 + .../tree-view}/branch-closed.png | Bin .../tree-view}/branch-open.png | Bin dgp/gui/ui/set_line_label.ui | 94 - dgp/gui/ui/splash_screen.ui | 8 +- dgp/lib/project.py | 6 +- dgp/lib/types.py | 7 +- dgp/resources_rc.py | 3240 +++++++++-------- 42 files changed, 1762 insertions(+), 1752 deletions(-) delete mode 100644 dgp/gui/ui/resources.qrc create mode 100644 dgp/gui/ui/resources/AutosizeStretch_16x.png create mode 100644 dgp/gui/ui/resources/AutosizeStretch_16x.svg create mode 100644 dgp/gui/ui/resources/GeoLocation_16x.svg create mode 100644 dgp/gui/ui/resources/apple_grav.svg rename dgp/gui/ui/{assets => resources}/boat_icon.png (100%) rename dgp/gui/ui/{assets => resources}/dgs_icon.xpm (100%) rename dgp/gui/ui/{assets => resources}/folder_open.png (100%) rename dgp/gui/ui/{assets/geoid_icon.png => resources/geoid.png} (100%) create mode 100644 dgp/gui/ui/resources/gps_icon.png create mode 100644 dgp/gui/ui/resources/grav_icon.png rename dgp/gui/ui/{assets => resources}/meter_config.png (100%) rename dgp/gui/ui/{assets/new_project.png => resources/new_file.png} (100%) rename dgp/gui/ui/{assets/flight_icon.png => resources/plane_icon.png} (100%) create mode 100644 dgp/gui/ui/resources/resources.qrc rename dgp/gui/ui/{assets => resources}/save_project.png (100%) create mode 100644 dgp/gui/ui/resources/tree-view/1x/Asset 1.png create mode 100644 dgp/gui/ui/resources/tree-view/2x/Asset 1@2x.png create mode 100644 dgp/gui/ui/resources/tree-view/2x/chevron-down@2x.png create mode 100644 dgp/gui/ui/resources/tree-view/2x/chevron-right@2x.png create mode 100644 dgp/gui/ui/resources/tree-view/3x/chevron-down@3x.png create mode 100644 dgp/gui/ui/resources/tree-view/3x/chevron-right@3x.png create mode 100644 dgp/gui/ui/resources/tree-view/ExpandChevronDown_16x.png create mode 100644 dgp/gui/ui/resources/tree-view/ExpandChevronDown_16x.svg create mode 100644 dgp/gui/ui/resources/tree-view/ExpandChevronRight_16x.png create mode 100644 dgp/gui/ui/resources/tree-view/ExpandChevronRight_16x.svg create mode 100644 dgp/gui/ui/resources/tree-view/ExpandChevronRight_lg_16x.png create mode 100644 dgp/gui/ui/resources/tree-view/ExpandChevronRight_lg_16x.svg rename dgp/gui/ui/{assets => resources/tree-view}/branch-closed.png (100%) rename dgp/gui/ui/{assets => resources/tree-view}/branch-open.png (100%) delete mode 100644 dgp/gui/ui/set_line_label.ui diff --git a/dgp/gui/dialogs.py b/dgp/gui/dialogs.py index 0a2911e..50adfcb 100644 --- a/dgp/gui/dialogs.py +++ b/dgp/gui/dialogs.py @@ -305,6 +305,9 @@ def __init__(self, project, flight, dtype=enums.DataTypes.GRAVITY, self._flight = flight self._custom_cols = None self._dtype = dtype + icon = {enums.DataTypes.GRAVITY: ':icons/gravity', + enums.DataTypes.TRAJECTORY: ':icons/gps'}[dtype] + self.setWindowIcon(Qt.QIcon(icon)) self._file_filter = "(*.csv *.dat *.txt)" self._base_dir = '.' @@ -541,8 +544,8 @@ def __init__(self, *args): self.prj_dir.setText(str(desktop)) # Populate the type selection list - flt_icon = Qt.QIcon(':images/assets/flight_icon.png') - boat_icon = Qt.QIcon(':images/assets/boat_icon.png') + flt_icon = Qt.QIcon(':icons/airborne') + boat_icon = Qt.QIcon(':icons/marine') dgs_airborne = Qt.QListWidgetItem(flt_icon, 'DGS Airborne', self.prj_type_list) dgs_airborne.setData(QtCore.Qt.UserRole, enums.ProjectTypes.AIRBORNE) diff --git a/dgp/gui/main.py b/dgp/gui/main.py index 130387e..31df15b 100644 --- a/dgp/gui/main.py +++ b/dgp/gui/main.py @@ -79,11 +79,11 @@ def __init__(self, project: Union[prj.GravityProject, } QTreeView::branch:closed:has-children { background: none; - image: url(:/images/assets/branch-closed.png); + image: url(:/icons/chevron-right); } QTreeView::branch:open:has-children { background: none; - image: url(:/images/assets/branch-open.png); + image: url(:/icons/chevron-down); } """) diff --git a/dgp/gui/ui/add_flight_dialog.ui b/dgp/gui/ui/add_flight_dialog.ui index 794c22f..22d0dab 100644 --- a/dgp/gui/ui/add_flight_dialog.ui +++ b/dgp/gui/ui/add_flight_dialog.ui @@ -20,8 +20,8 @@ Add Flight - - :/images/assets/flight_icon.png:/images/assets/flight_icon.png + + :/icons/airborne:/icons/airborne true @@ -266,7 +266,7 @@ browse_gps - + diff --git a/dgp/gui/ui/advanced_data_import.ui b/dgp/gui/ui/advanced_data_import.ui index 8a602c7..4be9951 100644 --- a/dgp/gui/ui/advanced_data_import.ui +++ b/dgp/gui/ui/advanced_data_import.ui @@ -26,8 +26,8 @@ Advanced Import - - :/images/assets/folder_open.png:/images/assets/folder_open.png + + :/icons/new_file.png:/icons/new_file.png @@ -380,7 +380,7 @@ Edit Columns - + :/images/assets/meter_config.png:/images/assets/meter_config.png @@ -432,7 +432,7 @@ - + diff --git a/dgp/gui/ui/edit_import_view.ui b/dgp/gui/ui/edit_import_view.ui index 7205059..6a94c58 100644 --- a/dgp/gui/ui/edit_import_view.ui +++ b/dgp/gui/ui/edit_import_view.ui @@ -41,7 +41,11 @@ Autosize Column Widths - <> + + + + + :/icons/AutosizeStretch_16x.png:/icons/AutosizeStretch_16x.png @@ -154,7 +158,9 @@ - + + + btn_cancel diff --git a/dgp/gui/ui/main_window.ui b/dgp/gui/ui/main_window.ui index 1a9ddbd..98c84b3 100644 --- a/dgp/gui/ui/main_window.ui +++ b/dgp/gui/ui/main_window.ui @@ -20,8 +20,8 @@ Dynamic Gravity Processor - - :/images/assets/geoid_icon.png:/images/assets/geoid_icon.png + + :/images/geoid:/images/geoid QTabWidget::Triangular @@ -173,8 +173,8 @@ Add Flight - - :/images/assets/flight_icon.png:/images/assets/flight_icon.png + + :/icons/airborne:/icons/airborne @@ -184,8 +184,8 @@ Add Meter - - :/images/assets/meter_config.png:/images/assets/meter_config.png + + :/icons/meter_config.png:/icons/meter_config.png @@ -195,8 +195,8 @@ Import GPS - - :/images/assets/geoid_icon.png:/images/assets/geoid_icon.png + + :/icons/gps:/icons/gps @@ -205,6 +205,16 @@ Import Gravity + + + :/icons/gravity:/icons/gravity + + + + 16 + 16 + + @@ -253,7 +263,8 @@ - + + @@ -559,8 +570,8 @@ - - :/images/assets/new_project.png:/images/assets/new_project.png + + :/icons/new_file.png:/icons/new_file.png New Project... @@ -571,8 +582,8 @@ - - :/images/assets/folder_open.png:/images/assets/folder_open.png + + :/icons/folder_open.png:/icons/folder_open.png Open Project @@ -583,8 +594,8 @@ - - :/images/assets/save_project.png:/images/assets/save_project.png + + :/icons/save_project.png:/icons/save_project.png Save Project @@ -595,8 +606,8 @@ - - :/images/assets/flight_icon.png:/images/assets/flight_icon.png + + :/icons/airborne:/icons/airborne Add Flight @@ -607,8 +618,8 @@ - - :/images/assets/meter_config.png:/images/assets/meter_config.png + + :/icons/meter_config.png:/icons/meter_config.png Add Meter @@ -618,23 +629,15 @@ - - Project Info... - - - Ctrl+I - - - - - :/images/assets/geoid_icon.png:/images/assets/geoid_icon.png + + :/icons/dgs:/icons/dgs - Import Data + Project Info... - Ctrl+O + Ctrl+I @@ -652,11 +655,19 @@ + + + :/icons/gps:/icons/gps + Import GPS + + + :/icons/gravity:/icons/gravity + Import Gravity @@ -674,7 +685,7 @@ prj_add_flight - + diff --git a/dgp/gui/ui/project_dialog.ui b/dgp/gui/ui/project_dialog.ui index 93e29c0..cb74913 100644 --- a/dgp/gui/ui/project_dialog.ui +++ b/dgp/gui/ui/project_dialog.ui @@ -38,8 +38,8 @@ Create New Project - - 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b/dgp/gui/ui/resources/tree-view/ExpandChevronRight_lg_16x.svg new file mode 100644 index 0000000..731598c --- /dev/null +++ b/dgp/gui/ui/resources/tree-view/ExpandChevronRight_lg_16x.svg @@ -0,0 +1 @@ + \ No newline at end of file diff --git a/dgp/gui/ui/assets/branch-closed.png b/dgp/gui/ui/resources/tree-view/branch-closed.png similarity index 100% rename from dgp/gui/ui/assets/branch-closed.png rename to dgp/gui/ui/resources/tree-view/branch-closed.png diff --git a/dgp/gui/ui/assets/branch-open.png b/dgp/gui/ui/resources/tree-view/branch-open.png similarity index 100% rename from dgp/gui/ui/assets/branch-open.png rename to dgp/gui/ui/resources/tree-view/branch-open.png diff --git a/dgp/gui/ui/set_line_label.ui b/dgp/gui/ui/set_line_label.ui deleted file mode 100644 index de29d37..0000000 --- a/dgp/gui/ui/set_line_label.ui +++ /dev/null @@ -1,94 +0,0 @@ - - - Dialog - - - - 0 - 0 - 310 - 73 - - - - Set Line Label - - - true - - - - - 140 - 40 - 161 - 32 - - - - Qt::Horizontal - - - QDialogButtonBox::Cancel|QDialogButtonBox::Ok - - - - - - 10 - 10 - 60 - 16 - - - - Line label: - - - - - - 80 - 10 - 221 - 21 - - - - - - - - button_box - accepted() - Dialog - accept() - - - 248 - 254 - - - 157 - 274 - - - - - button_box - rejected() - Dialog - reject() - - - 316 - 260 - - - 286 - 274 - - - - - diff --git a/dgp/gui/ui/splash_screen.ui b/dgp/gui/ui/splash_screen.ui index 19ae1ff..2227623 100644 --- a/dgp/gui/ui/splash_screen.ui +++ b/dgp/gui/ui/splash_screen.ui @@ -20,8 +20,8 @@ Dynamic Gravity Processor - - :/images/assets/geoid_icon.png:/images/assets/geoid_icon.png + + :/icons/dgs:/icons/dgs @@ -40,7 +40,7 @@ - :/images/assets/geoid_icon.png + :/images/geoid true @@ -230,7 +230,7 @@ - + diff --git a/dgp/lib/project.py b/dgp/lib/project.py index 4fb6e69..a0e02d5 100644 --- a/dgp/lib/project.py +++ b/dgp/lib/project.py @@ -303,8 +303,8 @@ def __init__(self, project: GravityProject, name: str, self.name = name self._project = project - self._icon = ':images/assets/flight_icon.png' - self.style = {'icon': ':images/assets/flight_icon.png', + self._icon = ':/icons/airborne' + self.style = {'icon': ':/icons/airborne', QtDataRoles.BackgroundRole: 'LightGray'} self.meter = meter self.date = kwargs.get('date', datetime.today()) @@ -455,7 +455,7 @@ def __init__(self, ctype, parent=None, **kwargs): # assert parent is not None self._ctype = ctype self._name = kwargs.get('name', self._ctype.__name__) - _icon = ':/images/assets/folder_open.png' + _icon = ':/icons/folder_open.png' self.style = {QtDataRoles.DecorationRole: _icon, QtDataRoles.BackgroundRole: 'LightBlue'} diff --git a/dgp/lib/types.py b/dgp/lib/types.py index 6fa3c6e..932b1be 100644 --- a/dgp/lib/types.py +++ b/dgp/lib/types.py @@ -513,8 +513,11 @@ def data(self, role: QtDataRoles): fname=self.filename) if role == QtDataRoles.ToolTipRole: return "UID: {}".format(self.uid) - if role == QtDataRoles.DecorationRole and self.active: - return ':images/assets/geoid_icon.png' + if role == QtDataRoles.DecorationRole: + if self.dtype == enums.DataTypes.GRAVITY: + return ':icons/grav' + if self.dtype == enums.DataTypes.TRAJECTORY: + return ':icons/gps' def children(self): return [] diff --git a/dgp/resources_rc.py b/dgp/resources_rc.py index 890d383..d5859d1 100644 --- a/dgp/resources_rc.py +++ b/dgp/resources_rc.py @@ -9,6 +9,1291 @@ from PyQt5 import QtCore qt_resource_data = b"\ +\x00\x00\x50\x2b\ +\x2f\ +\x2a\x20\x58\x50\x4d\x20\x2a\x2f\x0a\x73\x74\x61\x74\x69\x63\x20\ +\x63\x68\x61\x72\x20\x2a\x20\x43\x3a\x5c\x55\x73\x65\x72\x73\x5c\ +\x62\x72\x61\x64\x79\x7a\x70\x5c\x4f\x6e\x65\x44\x72\x69\x76\x65\ +\x5c\x44\x6f\x63\x75\x6d\x65\x6e\x74\x73\x5c\x44\x47\x53\x49\x63\ +\x6f\x6e\x5f\x78\x70\x6d\x5b\x5d\x20\x3d\x20\x7b\x0a\x22\x34\x38\ +\x20\x34\x38\x20\x39\x37\x37\x20\x32\x22\x2c\x0a\x22\x20\x20\x09\ +\x63\x20\x4e\x6f\x6e\x65\x22\x2c\x0a\x22\x2e\x20\x09\x63\x20\x23\ +\x44\x31\x43\x44\x44\x39\x22\x2c\x0a\x22\x2b\x20\x09\x63\x20\x23\ 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-\xa0\x01\xc0\x72\x3d\x9c\xa5\xd5\x43\x54\x8f\xea\xe2\x71\xf9\x3a\ -\xfc\x00\x80\x06\x00\xf7\xc9\x7b\x9b\x7c\xab\x64\x53\xb2\xa9\x7f\ -\x4e\xef\x93\x77\x00\xa8\x24\x00\x00\xf6\x77\x77\x0e\xe0\x6e\x3d\ -\x5c\x03\x00\xfc\x07\x0d\x05\x7c\xd8\x7c\x63\x5f\x7c\x00\x00\x00\ -\x00\x49\x45\x4e\x44\xae\x42\x60\x82\ -\x00\x00\x54\x2f\ -\x2f\ -\x2a\x20\x58\x50\x4d\x20\x2a\x2f\x0d\x0a\x73\x74\x61\x74\x69\x63\ -\x20\x63\x68\x61\x72\x20\x2a\x20\x43\x3a\x5c\x55\x73\x65\x72\x73\ -\x5c\x62\x72\x61\x64\x79\x7a\x70\x5c\x4f\x6e\x65\x44\x72\x69\x76\ -\x65\x5c\x44\x6f\x63\x75\x6d\x65\x6e\x74\x73\x5c\x44\x47\x53\x49\ -\x63\x6f\x6e\x5f\x78\x70\x6d\x5b\x5d\x20\x3d\x20\x7b\x0d\x0a\x22\ -\x34\x38\x20\x34\x38\x20\x39\x37\x37\x20\x32\x22\x2c\x0d\x0a\x22\ -\x20\x20\x09\x63\x20\x4e\x6f\x6e\x65\x22\x2c\x0d\x0a\x22\x2e\x20\ -\x09\x63\x20\x23\x44\x31\x43\x44\x44\x39\x22\x2c\x0d\x0a\x22\x2b\ -\x20\x09\x63\x20\x23\x42\x38\x42\x33\x43\x36\x22\x2c\x0d\x0a\x22\ 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-\x63\x20\x23\x33\x39\x32\x42\x36\x33\x22\x2c\x0d\x0a\x22\x7e\x20\ -\x09\x63\x20\x23\x33\x32\x32\x34\x36\x30\x22\x2c\x0d\x0a\x22\x7b\ -\x20\x09\x63\x20\x23\x32\x44\x32\x30\x35\x44\x22\x2c\x0d\x0a\x22\ -\x5d\x20\x09\x63\x20\x23\x32\x46\x32\x31\x35\x46\x22\x2c\x0d\x0a\ -\x22\x5e\x20\x09\x63\x20\x23\x32\x46\x32\x31\x35\x45\x22\x2c\x0d\ -\x0a\x22\x2f\x20\x09\x63\x20\x23\x32\x44\x31\x46\x35\x45\x22\x2c\ -\x0d\x0a\x22\x28\x20\x09\x63\x20\x23\x33\x31\x32\x35\x36\x33\x22\ -\x2c\x0d\x0a\x22\x5f\x20\x09\x63\x20\x23\x34\x32\x33\x37\x37\x30\ -\x22\x2c\x0d\x0a\x22\x3a\x20\x09\x63\x20\x23\x36\x45\x36\x36\x39\ -\x31\x22\x2c\x0d\x0a\x22\x3c\x20\x09\x63\x20\x23\x41\x35\x41\x30\ -\x42\x39\x22\x2c\x0d\x0a\x22\x5b\x20\x09\x63\x20\x23\x45\x31\x44\ -\x46\x45\x35\x22\x2c\x0d\x0a\x22\x7d\x20\x09\x63\x20\x23\x46\x45\ -\x46\x45\x46\x44\x22\x2c\x0d\x0a\x22\x7c\x20\x09\x63\x20\x23\x44\ -\x41\x45\x34\x45\x38\x22\x2c\x0d\x0a\x22\x31\x20\x09\x63\x20\x23\ 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-\x36\x35\x39\x22\x2c\x0d\x0a\x22\x65\x20\x09\x63\x20\x23\x32\x31\ -\x31\x35\x35\x39\x22\x2c\x0d\x0a\x22\x66\x20\x09\x63\x20\x23\x32\ -\x32\x31\x35\x35\x39\x22\x2c\x0d\x0a\x22\x67\x20\x09\x63\x20\x23\ -\x32\x32\x31\x35\x35\x41\x22\x2c\x0d\x0a\x22\x68\x20\x09\x63\x20\ -\x23\x32\x31\x31\x34\x35\x39\x22\x2c\x0d\x0a\x22\x69\x20\x09\x63\ -\x20\x23\x32\x30\x31\x33\x35\x38\x22\x2c\x0d\x0a\x22\x6a\x20\x09\ -\x63\x20\x23\x32\x33\x31\x36\x35\x39\x22\x2c\x0d\x0a\x22\x6b\x20\ -\x09\x63\x20\x23\x34\x41\x34\x30\x37\x34\x22\x2c\x0d\x0a\x22\x6c\ -\x20\x09\x63\x20\x23\x39\x30\x38\x41\x41\x38\x22\x2c\x0d\x0a\x22\ -\x6d\x20\x09\x63\x20\x23\x39\x32\x41\x35\x42\x44\x22\x2c\x0d\x0a\ -\x22\x6e\x20\x09\x63\x20\x23\x34\x30\x37\x34\x39\x38\x22\x2c\x0d\ -\x0a\x22\x6f\x20\x09\x63\x20\x23\x34\x32\x37\x35\x39\x38\x22\x2c\ -\x0d\x0a\x22\x70\x20\x09\x63\x20\x23\x39\x35\x42\x31\x43\x34\x22\ -\x2c\x0d\x0a\x22\x71\x20\x09\x63\x20\x23\x45\x31\x45\x38\x45\x44\ -\x22\x2c\x0d\x0a\x22\x72\x20\x09\x63\x20\x23\x46\x43\x46\x43\x46\ -\x43\x22\x2c\x0d\x0a\x22\x73\x20\x09\x63\x20\x23\x45\x46\x46\x34\ -\x46\x36\x22\x2c\x0d\x0a\x22\x74\x20\x09\x63\x20\x23\x33\x45\x37\ -\x31\x39\x37\x22\x2c\x0d\x0a\x22\x75\x20\x09\x63\x20\x23\x36\x33\ -\x35\x38\x38\x35\x22\x2c\x0d\x0a\x22\x76\x20\x09\x63\x20\x23\x32\ -\x38\x31\x43\x35\x43\x22\x2c\x0d\x0a\x22\x77\x20\x09\x63\x20\x23\ -\x32\x42\x31\x45\x35\x44\x22\x2c\x0d\x0a\x22\x78\x20\x09\x63\x20\ -\x23\x32\x46\x32\x32\x35\x46\x22\x2c\x0d\x0a\x22\x79\x20\x09\x63\ -\x20\x23\x32\x34\x31\x37\x35\x41\x22\x2c\x0d\x0a\x22\x7a\x20\x09\ -\x63\x20\x23\x32\x37\x31\x41\x35\x42\x22\x2c\x0d\x0a\x22\x41\x20\ -\x09\x63\x20\x23\x32\x45\x32\x31\x35\x44\x22\x2c\x0d\x0a\x22\x42\ -\x20\x09\x63\x20\x23\x32\x36\x31\x41\x35\x43\x22\x2c\x0d\x0a\x22\ -\x43\x20\x09\x63\x20\x23\x31\x46\x31\x33\x35\x37\x22\x2c\x0d\x0a\ -\x22\x44\x20\x09\x63\x20\x23\x32\x32\x31\x35\x35\x38\x22\x2c\x0d\ -\x0a\x22\x45\x20\x09\x63\x20\x23\x32\x33\x31\x37\x35\x42\x22\x2c\ -\x0d\x0a\x22\x46\x20\x09\x63\x20\x23\x32\x41\x31\x45\x35\x44\x22\ -\x2c\x0d\x0a\x22\x47\x20\x09\x63\x20\x23\x33\x33\x32\x36\x36\x30\ -\x22\x2c\x0d\x0a\x22\x48\x20\x09\x63\x20\x23\x32\x46\x32\x35\x36\ -\x30\x22\x2c\x0d\x0a\x22\x49\x20\x09\x63\x20\x23\x32\x33\x32\x39\ -\x36\x35\x22\x2c\x0d\x0a\x22\x4a\x20\x09\x63\x20\x23\x34\x37\x35\ -\x39\x38\x37\x22\x2c\x0d\x0a\x22\x4b\x20\x09\x63\x20\x23\x44\x33\ -\x44\x41\x45\x31\x22\x2c\x0d\x0a\x22\x4c\x20\x09\x63\x20\x23\x46\ -\x44\x46\x45\x46\x44\x22\x2c\x0d\x0a\x22\x4d\x20\x09\x63\x20\x23\ -\x46\x45\x46\x45\x46\x45\x22\x2c\x0d\x0a\x22\x4e\x20\x09\x63\x20\ -\x23\x45\x36\x45\x44\x46\x30\x22\x2c\x0d\x0a\x22\x4f\x20\x09\x63\ -\x20\x23\x33\x35\x36\x42\x39\x32\x22\x2c\x0d\x0a\x22\x50\x20\x09\ -\x63\x20\x23\x39\x32\x38\x41\x41\x37\x22\x2c\x0d\x0a\x22\x51\x20\ -\x09\x63\x20\x23\x33\x32\x32\x36\x36\x31\x22\x2c\x0d\x0a\x22\x52\ 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-\x42\x22\x2c\x0d\x0a\x22\x7e\x2b\x09\x63\x20\x23\x32\x35\x31\x39\ -\x35\x41\x22\x2c\x0d\x0a\x22\x7b\x2b\x09\x63\x20\x23\x32\x30\x31\ -\x35\x35\x38\x22\x2c\x0d\x0a\x22\x5d\x2b\x09\x63\x20\x23\x32\x39\ -\x31\x44\x35\x44\x22\x2c\x0d\x0a\x22\x5e\x2b\x09\x63\x20\x23\x32\ -\x45\x32\x32\x35\x46\x22\x2c\x0d\x0a\x22\x2f\x2b\x09\x63\x20\x23\ -\x33\x30\x32\x34\x35\x46\x22\x2c\x0d\x0a\x22\x28\x2b\x09\x63\x20\ -\x23\x33\x33\x32\x37\x36\x32\x22\x2c\x0d\x0a\x22\x5f\x2b\x09\x63\ -\x20\x23\x33\x34\x32\x38\x36\x31\x22\x2c\x0d\x0a\x22\x3a\x2b\x09\ -\x63\x20\x23\x32\x46\x32\x33\x35\x46\x22\x2c\x0d\x0a\x22\x3c\x2b\ -\x09\x63\x20\x23\x32\x34\x31\x38\x35\x43\x22\x2c\x0d\x0a\x22\x5b\ -\x2b\x09\x63\x20\x23\x31\x46\x31\x32\x35\x36\x22\x2c\x0d\x0a\x22\ -\x7d\x2b\x09\x63\x20\x23\x31\x45\x31\x32\x35\x36\x22\x2c\x0d\x0a\ -\x22\x7c\x2b\x09\x63\x20\x23\x31\x42\x31\x46\x35\x46\x22\x2c\x0d\ -\x0a\x22\x31\x2b\x09\x63\x20\x23\x30\x46\x34\x33\x37\x37\x22\x2c\ -\x0d\x0a\x22\x32\x2b\x09\x63\x20\x23\x31\x35\x33\x31\x36\x43\x22\ -\x2c\x0d\x0a\x22\x33\x2b\x09\x63\x20\x23\x37\x37\x36\x46\x39\x37\ -\x22\x2c\x0d\x0a\x22\x34\x2b\x09\x63\x20\x23\x43\x45\x44\x39\x45\ -\x31\x22\x2c\x0d\x0a\x22\x35\x2b\x09\x63\x20\x23\x36\x44\x39\x34\ -\x41\x45\x22\x2c\x0d\x0a\x22\x36\x2b\x09\x63\x20\x23\x34\x32\x37\ -\x34\x39\x38\x22\x2c\x0d\x0a\x22\x37\x2b\x09\x63\x20\x23\x34\x45\ -\x37\x44\x39\x44\x22\x2c\x0d\x0a\x22\x38\x2b\x09\x63\x20\x23\x43\ -\x31\x44\x30\x44\x39\x22\x2c\x0d\x0a\x22\x39\x2b\x09\x63\x20\x23\ -\x35\x34\x34\x39\x37\x41\x22\x2c\x0d\x0a\x22\x30\x2b\x09\x63\x20\ -\x23\x33\x35\x32\x38\x36\x31\x22\x2c\x0d\x0a\x22\x61\x2b\x09\x63\ -\x20\x23\x33\x33\x32\x36\x36\x31\x22\x2c\x0d\x0a\x22\x62\x2b\x09\ -\x63\x20\x23\x33\x37\x32\x39\x36\x32\x22\x2c\x0d\x0a\x22\x63\x2b\ -\x09\x63\x20\x23\x32\x33\x31\x37\x35\x41\x22\x2c\x0d\x0a\x22\x64\ -\x2b\x09\x63\x20\x23\x32\x45\x32\x31\x35\x45\x22\x2c\x0d\x0a\x22\ -\x65\x2b\x09\x63\x20\x23\x32\x37\x31\x45\x35\x45\x22\x2c\x0d\x0a\ -\x22\x66\x2b\x09\x63\x20\x23\x33\x35\x32\x37\x36\x31\x22\x2c\x0d\ -\x0a\x22\x67\x2b\x09\x63\x20\x23\x32\x42\x31\x46\x35\x44\x22\x2c\ -\x0d\x0a\x22\x68\x2b\x09\x63\x20\x23\x32\x33\x31\x37\x35\x38\x22\ -\x2c\x0d\x0a\x22\x69\x2b\x09\x63\x20\x23\x31\x46\x31\x36\x35\x39\ -\x22\x2c\x0d\x0a\x22\x6a\x2b\x09\x63\x20\x23\x31\x32\x33\x36\x36\ -\x46\x22\x2c\x0d\x0a\x22\x6b\x2b\x09\x63\x20\x23\x31\x30\x33\x43\ -\x37\x33\x22\x2c\x0d\x0a\x22\x6c\x2b\x09\x63\x20\x23\x32\x30\x31\ -\x42\x35\x44\x22\x2c\x0d\x0a\x22\x6d\x2b\x09\x63\x20\x23\x33\x35\ -\x32\x39\x36\x37\x22\x2c\x0d\x0a\x22\x6e\x2b\x09\x63\x20\x23\x43\ -\x35\x43\x33\x44\x31\x22\x2c\x0d\x0a\x22\x6f\x2b\x09\x63\x20\x23\ -\x44\x39\x45\x32\x45\x37\x22\x2c\x0d\x0a\x22\x70\x2b\x09\x63\x20\ -\x23\x37\x46\x41\x30\x42\x38\x22\x2c\x0d\x0a\x22\x71\x2b\x09\x63\ -\x20\x23\x33\x46\x37\x30\x39\x34\x22\x2c\x0d\x0a\x22\x72\x2b\x09\ -\x63\x20\x23\x39\x43\x42\x35\x43\x36\x22\x2c\x0d\x0a\x22\x73\x2b\ -\x09\x63\x20\x23\x41\x42\x41\x35\x42\x42\x22\x2c\x0d\x0a\x22\x74\ -\x2b\x09\x63\x20\x23\x33\x32\x32\x33\x35\x46\x22\x2c\x0d\x0a\x22\ -\x75\x2b\x09\x63\x20\x23\x33\x34\x32\x37\x36\x31\x22\x2c\x0d\x0a\ -\x22\x76\x2b\x09\x63\x20\x23\x32\x34\x31\x38\x35\x42\x22\x2c\x0d\ -\x0a\x22\x77\x2b\x09\x63\x20\x23\x32\x32\x31\x37\x35\x42\x22\x2c\ -\x0d\x0a\x22\x78\x2b\x09\x63\x20\x23\x32\x41\x31\x45\x35\x43\x22\ -\x2c\x0d\x0a\x22\x79\x2b\x09\x63\x20\x23\x35\x45\x35\x35\x38\x33\ -\x22\x2c\x0d\x0a\x22\x7a\x2b\x09\x63\x20\x23\x38\x34\x37\x44\x39\ -\x45\x22\x2c\x0d\x0a\x22\x41\x2b\x09\x63\x20\x23\x35\x39\x34\x45\ -\x37\x43\x22\x2c\x0d\x0a\x22\x42\x2b\x09\x63\x20\x23\x33\x35\x32\ -\x38\x36\x32\x22\x2c\x0d\x0a\x22\x43\x2b\x09\x63\x20\x23\x33\x32\ -\x32\x35\x36\x31\x22\x2c\x0d\x0a\x22\x44\x2b\x09\x63\x20\x23\x33\ -\x30\x32\x33\x36\x30\x22\x2c\x0d\x0a\x22\x45\x2b\x09\x63\x20\x23\ -\x33\x35\x32\x39\x36\x34\x22\x2c\x0d\x0a\x22\x46\x2b\x09\x63\x20\ -\x23\x31\x41\x33\x31\x36\x42\x22\x2c\x0d\x0a\x22\x47\x2b\x09\x63\ -\x20\x23\x31\x30\x34\x37\x37\x41\x22\x2c\x0d\x0a\x22\x48\x2b\x09\ -\x63\x20\x23\x32\x30\x32\x41\x36\x36\x22\x2c\x0d\x0a\x22\x49\x2b\ -\x09\x63\x20\x23\x31\x46\x31\x32\x35\x37\x22\x2c\x0d\x0a\x22\x4a\ -\x2b\x09\x63\x20\x23\x32\x34\x31\x37\x35\x42\x22\x2c\x0d\x0a\x22\ -\x4b\x2b\x09\x63\x20\x23\x32\x34\x31\x37\x35\x43\x22\x2c\x0d\x0a\ -\x22\x4c\x2b\x09\x63\x20\x23\x38\x34\x37\x45\x41\x31\x22\x2c\x0d\ -\x0a\x22\x4d\x2b\x09\x63\x20\x23\x36\x39\x38\x46\x41\x41\x22\x2c\ -\x0d\x0a\x22\x4e\x2b\x09\x63\x20\x23\x41\x33\x42\x41\x43\x42\x22\ -\x2c\x0d\x0a\x22\x4f\x2b\x09\x63\x20\x23\x44\x31\x44\x44\x45\x34\ -\x22\x2c\x0d\x0a\x22\x50\x2b\x09\x63\x20\x23\x42\x36\x43\x39\x44\ -\x35\x22\x2c\x0d\x0a\x22\x51\x2b\x09\x63\x20\x23\x37\x39\x36\x46\ -\x39\x33\x22\x2c\x0d\x0a\x22\x52\x2b\x09\x63\x20\x23\x34\x30\x33\ -\x33\x36\x41\x22\x2c\x0d\x0a\x22\x53\x2b\x09\x63\x20\x23\x39\x39\ -\x39\x33\x41\x45\x22\x2c\x0d\x0a\x22\x54\x2b\x09\x63\x20\x23\x41\ -\x44\x41\x39\x42\x45\x22\x2c\x0d\x0a\x22\x55\x2b\x09\x63\x20\x23\ -\x41\x41\x41\x36\x42\x44\x22\x2c\x0d\x0a\x22\x56\x2b\x09\x63\x20\ -\x23\x41\x39\x41\x35\x42\x44\x22\x2c\x0d\x0a\x22\x57\x2b\x09\x63\ -\x20\x23\x41\x31\x39\x43\x42\x37\x22\x2c\x0d\x0a\x22\x58\x2b\x09\ -\x63\x20\x23\x38\x43\x38\x37\x41\x38\x22\x2c\x0d\x0a\x22\x59\x2b\ -\x09\x63\x20\x23\x36\x31\x35\x39\x38\x38\x22\x2c\x0d\x0a\x22\x5a\ -\x2b\x09\x63\x20\x23\x32\x39\x31\x45\x35\x46\x22\x2c\x0d\x0a\x22\ -\x60\x2b\x09\x63\x20\x23\x32\x39\x31\x44\x35\x42\x22\x2c\x0d\x0a\ -\x22\x20\x40\x09\x63\x20\x23\x33\x35\x32\x41\x36\x37\x22\x2c\x0d\ -\x0a\x22\x2e\x40\x09\x63\x20\x23\x34\x39\x33\x46\x37\x36\x22\x2c\ -\x0d\x0a\x22\x2b\x40\x09\x63\x20\x23\x35\x33\x34\x39\x37\x45\x22\ -\x2c\x0d\x0a\x22\x40\x40\x09\x63\x20\x23\x34\x42\x34\x30\x37\x35\ -\x22\x2c\x0d\x0a\x22\x23\x40\x09\x63\x20\x23\x36\x30\x35\x36\x38\ -\x32\x22\x2c\x0d\x0a\x22\x24\x40\x09\x63\x20\x23\x44\x44\x44\x43\ -\x45\x32\x22\x2c\x0d\x0a\x22\x25\x40\x09\x63\x20\x23\x46\x36\x46\ -\x35\x46\x36\x22\x2c\x0d\x0a\x22\x26\x40\x09\x63\x20\x23\x38\x31\ -\x37\x42\x39\x46\x22\x2c\x0d\x0a\x22\x2a\x40\x09\x63\x20\x23\x32\ -\x41\x31\x44\x35\x45\x22\x2c\x0d\x0a\x22\x3d\x40\x09\x63\x20\x23\ -\x36\x45\x36\x34\x38\x43\x22\x2c\x0d\x0a\x22\x2d\x40\x09\x63\x20\ -\x23\x41\x38\x41\x32\x42\x38\x22\x2c\x0d\x0a\x22\x3b\x40\x09\x63\ -\x20\x23\x38\x34\x39\x33\x41\x43\x22\x2c\x0d\x0a\x22\x3e\x40\x09\ -\x63\x20\x23\x31\x46\x35\x37\x38\x33\x22\x2c\x0d\x0a\x22\x2c\x40\ -\x09\x63\x20\x23\x37\x30\x38\x44\x41\x39\x22\x2c\x0d\x0a\x22\x27\ -\x40\x09\x63\x20\x23\x38\x31\x37\x39\x39\x42\x22\x2c\x0d\x0a\x22\ -\x29\x40\x09\x63\x20\x23\x33\x42\x32\x46\x36\x37\x22\x2c\x0d\x0a\ -\x22\x21\x40\x09\x63\x20\x23\x34\x41\x34\x31\x37\x36\x22\x2c\x0d\ -\x0a\x22\x7e\x40\x09\x63\x20\x23\x44\x43\x44\x46\x45\x35\x22\x2c\ -\x0d\x0a\x22\x7b\x40\x09\x63\x20\x23\x41\x37\x42\x43\x43\x42\x22\ -\x2c\x0d\x0a\x22\x5d\x40\x09\x63\x20\x23\x44\x33\x44\x45\x45\x33\ -\x22\x2c\x0d\x0a\x22\x5e\x40\x09\x63\x20\x23\x43\x33\x44\x32\x44\ -\x42\x22\x2c\x0d\x0a\x22\x2f\x40\x09\x63\x20\x23\x38\x33\x41\x33\ -\x42\x38\x22\x2c\x0d\x0a\x22\x28\x40\x09\x63\x20\x23\x35\x31\x34\ -\x34\x37\x34\x22\x2c\x0d\x0a\x22\x5f\x40\x09\x63\x20\x23\x33\x36\ -\x32\x38\x36\x31\x22\x2c\x0d\x0a\x22\x3a\x40\x09\x63\x20\x23\x34\ -\x35\x33\x38\x36\x45\x22\x2c\x0d\x0a\x22\x3c\x40\x09\x63\x20\x23\ -\x44\x46\x44\x44\x45\x35\x22\x2c\x0d\x0a\x22\x5b\x40\x09\x63\x20\ -\x23\x46\x45\x46\x46\x46\x45\x22\x2c\x0d\x0a\x22\x7d\x40\x09\x63\ -\x20\x23\x46\x36\x46\x35\x46\x38\x22\x2c\x0d\x0a\x22\x7c\x40\x09\ -\x63\x20\x23\x33\x44\x33\x33\x36\x43\x22\x2c\x0d\x0a\x22\x31\x40\ -\x09\x63\x20\x23\x32\x36\x31\x41\x35\x42\x22\x2c\x0d\x0a\x22\x32\ 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-\x20\x23\x44\x38\x45\x32\x45\x38\x22\x2c\x0d\x0a\x22\x66\x40\x09\ -\x63\x20\x23\x34\x44\x37\x45\x41\x30\x22\x2c\x0d\x0a\x22\x67\x40\ -\x09\x63\x20\x23\x36\x38\x39\x30\x41\x43\x22\x2c\x0d\x0a\x22\x68\ -\x40\x09\x63\x20\x23\x46\x33\x46\x36\x46\x36\x22\x2c\x0d\x0a\x22\ -\x69\x40\x09\x63\x20\x23\x46\x42\x46\x42\x46\x42\x22\x2c\x0d\x0a\ -\x22\x6a\x40\x09\x63\x20\x23\x41\x45\x41\x38\x42\x44\x22\x2c\x0d\ -\x0a\x22\x6b\x40\x09\x63\x20\x23\x33\x45\x33\x32\x36\x37\x22\x2c\ -\x0d\x0a\x22\x6c\x40\x09\x63\x20\x23\x32\x43\x32\x30\x36\x31\x22\ -\x2c\x0d\x0a\x22\x6d\x40\x09\x63\x20\x23\x43\x33\x43\x30\x44\x30\ -\x22\x2c\x0d\x0a\x22\x6e\x40\x09\x63\x20\x23\x38\x46\x41\x44\x43\ -\x30\x22\x2c\x0d\x0a\x22\x6f\x40\x09\x63\x20\x23\x37\x32\x39\x38\ -\x42\x31\x22\x2c\x0d\x0a\x22\x70\x40\x09\x63\x20\x23\x36\x38\x38\ -\x46\x41\x39\x22\x2c\x0d\x0a\x22\x71\x40\x09\x63\x20\x23\x37\x46\ -\x39\x46\x42\x36\x22\x2c\x0d\x0a\x22\x72\x40\x09\x63\x20\x23\x42\ -\x46\x42\x43\x43\x42\x22\x2c\x0d\x0a\x22\x73\x40\x09\x63\x20\x23\ -\x34\x30\x33\x32\x36\x37\x22\x2c\x0d\x0a\x22\x74\x40\x09\x63\x20\ -\x23\x34\x34\x33\x37\x36\x44\x22\x2c\x0d\x0a\x22\x75\x40\x09\x63\ -\x20\x23\x45\x30\x44\x44\x45\x35\x22\x2c\x0d\x0a\x22\x76\x40\x09\ -\x63\x20\x23\x46\x46\x46\x46\x46\x46\x22\x2c\x0d\x0a\x22\x77\x40\ -\x09\x63\x20\x23\x45\x41\x45\x39\x45\x44\x22\x2c\x0d\x0a\x22\x78\ -\x40\x09\x63\x20\x23\x41\x31\x39\x43\x42\x35\x22\x2c\x0d\x0a\x22\ -\x79\x40\x09\x63\x20\x23\x41\x38\x41\x33\x42\x42\x22\x2c\x0d\x0a\ -\x22\x7a\x40\x09\x63\x20\x23\x44\x35\x44\x32\x44\x44\x22\x2c\x0d\ -\x0a\x22\x41\x40\x09\x63\x20\x23\x32\x41\x31\x46\x35\x46\x22\x2c\ -\x0d\x0a\x22\x42\x40\x09\x63\x20\x23\x32\x44\x32\x34\x36\x30\x22\ -\x2c\x0d\x0a\x22\x43\x40\x09\x63\x20\x23\x37\x41\x37\x37\x39\x41\ -\x22\x2c\x0d\x0a\x22\x44\x40\x09\x63\x20\x23\x46\x32\x46\x34\x46\ -\x37\x22\x2c\x0d\x0a\x22\x45\x40\x09\x63\x20\x23\x41\x33\x39\x44\ -\x42\x35\x22\x2c\x0d\x0a\x22\x46\x40\x09\x63\x20\x23\x37\x36\x36\ -\x45\x39\x35\x22\x2c\x0d\x0a\x22\x47\x40\x09\x63\x20\x23\x45\x38\ -\x45\x36\x45\x42\x22\x2c\x0d\x0a\x22\x48\x40\x09\x63\x20\x23\x36\ -\x32\x35\x38\x38\x34\x22\x2c\x0d\x0a\x22\x49\x40\x09\x63\x20\x23\ -\x34\x36\x33\x39\x36\x45\x22\x2c\x0d\x0a\x22\x4a\x40\x09\x63\x20\ -\x23\x43\x46\x43\x43\x44\x38\x22\x2c\x0d\x0a\x22\x4b\x40\x09\x63\ -\x20\x23\x36\x42\x39\x32\x41\x45\x22\x2c\x0d\x0a\x22\x4c\x40\x09\ -\x63\x20\x23\x31\x36\x34\x34\x37\x38\x22\x2c\x0d\x0a\x22\x4d\x40\ -\x09\x63\x20\x23\x36\x30\x36\x33\x38\x45\x22\x2c\x0d\x0a\x22\x4e\ -\x40\x09\x63\x20\x23\x42\x34\x42\x30\x43\x34\x22\x2c\x0d\x0a\x22\ -\x4f\x40\x09\x63\x20\x23\x46\x38\x46\x37\x46\x37\x22\x2c\x0d\x0a\ -\x22\x50\x40\x09\x63\x20\x23\x37\x36\x36\x43\x39\x31\x22\x2c\x0d\ -\x0a\x22\x51\x40\x09\x63\x20\x23\x33\x32\x32\x35\x35\x46\x22\x2c\ -\x0d\x0a\x22\x52\x40\x09\x63\x20\x23\x39\x42\x39\x35\x42\x32\x22\ -\x2c\x0d\x0a\x22\x53\x40\x09\x63\x20\x23\x43\x35\x44\x33\x44\x43\ -\x22\x2c\x0d\x0a\x22\x54\x40\x09\x63\x20\x23\x39\x45\x42\x36\x43\ -\x36\x22\x2c\x0d\x0a\x22\x55\x40\x09\x63\x20\x23\x44\x44\x45\x34\ -\x45\x39\x22\x2c\x0d\x0a\x22\x56\x40\x09\x63\x20\x23\x46\x31\x46\ -\x34\x46\x35\x22\x2c\x0d\x0a\x22\x57\x40\x09\x63\x20\x23\x46\x32\ -\x46\x34\x46\x36\x22\x2c\x0d\x0a\x22\x58\x40\x09\x63\x20\x23\x39\ -\x44\x39\x37\x42\x31\x22\x2c\x0d\x0a\x22\x59\x40\x09\x63\x20\x23\ -\x33\x38\x32\x41\x36\x31\x22\x2c\x0d\x0a\x22\x5a\x40\x09\x63\x20\ -\x23\x34\x31\x33\x35\x36\x44\x22\x2c\x0d\x0a\x22\x60\x40\x09\x63\ -\x20\x23\x44\x46\x44\x44\x45\x36\x22\x2c\x0d\x0a\x22\x20\x23\x09\ -\x63\x20\x23\x43\x45\x43\x43\x44\x39\x22\x2c\x0d\x0a\x22\x2e\x23\ -\x09\x63\x20\x23\x32\x44\x32\x32\x36\x32\x22\x2c\x0d\x0a\x22\x2b\ -\x23\x09\x63\x20\x23\x34\x44\x34\x33\x37\x38\x22\x2c\x0d\x0a\x22\ -\x40\x23\x09\x63\x20\x23\x43\x34\x43\x31\x44\x31\x22\x2c\x0d\x0a\ -\x22\x23\x23\x09\x63\x20\x23\x46\x35\x46\x35\x46\x37\x22\x2c\x0d\ -\x0a\x22\x24\x23\x09\x63\x20\x23\x36\x37\x36\x31\x38\x45\x22\x2c\ -\x0d\x0a\x22\x25\x23\x09\x63\x20\x23\x32\x36\x31\x44\x35\x44\x22\ -\x2c\x0d\x0a\x22\x26\x23\x09\x63\x20\x23\x39\x43\x39\x42\x42\x34\ -\x22\x2c\x0d\x0a\x22\x2a\x23\x09\x63\x20\x23\x45\x34\x45\x33\x45\ -\x39\x22\x2c\x0d\x0a\x22\x3d\x23\x09\x63\x20\x23\x34\x44\x34\x32\ -\x37\x33\x22\x2c\x0d\x0a\x22\x2d\x23\x09\x63\x20\x23\x32\x46\x32\ -\x31\x36\x30\x22\x2c\x0d\x0a\x22\x3b\x23\x09\x63\x20\x23\x36\x37\ -\x35\x44\x38\x37\x22\x2c\x0d\x0a\x22\x3e\x23\x09\x63\x20\x23\x46\ -\x32\x46\x31\x46\x34\x22\x2c\x0d\x0a\x22\x2c\x23\x09\x63\x20\x23\ -\x38\x34\x37\x43\x39\x44\x22\x2c\x0d\x0a\x22\x27\x23\x09\x63\x20\ -\x23\x35\x42\x35\x30\x37\x46\x22\x2c\x0d\x0a\x22\x29\x23\x09\x63\ -\x20\x23\x46\x31\x46\x30\x46\x32\x22\x2c\x0d\x0a\x22\x21\x23\x09\ -\x63\x20\x23\x38\x35\x41\x36\x42\x43\x22\x2c\x0d\x0a\x22\x7e\x23\ -\x09\x63\x20\x23\x31\x37\x34\x44\x37\x44\x22\x2c\x0d\x0a\x22\x7b\ -\x23\x09\x63\x20\x23\x32\x42\x33\x35\x36\x43\x22\x2c\x0d\x0a\x22\ -\x5d\x23\x09\x63\x20\x23\x34\x34\x33\x39\x37\x30\x22\x2c\x0d\x0a\ -\x22\x5e\x23\x09\x63\x20\x23\x38\x39\x38\x33\x41\x35\x22\x2c\x0d\ -\x0a\x22\x2f\x23\x09\x63\x20\x23\x37\x37\x36\x46\x39\x35\x22\x2c\ -\x0d\x0a\x22\x28\x23\x09\x63\x20\x23\x34\x38\x33\x43\x36\x46\x22\ -\x2c\x0d\x0a\x22\x5f\x23\x09\x63\x20\x23\x33\x38\x32\x42\x36\x33\ -\x22\x2c\x0d\x0a\x22\x3a\x23\x09\x63\x20\x23\x37\x39\x37\x31\x39\ -\x38\x22\x2c\x0d\x0a\x22\x3c\x23\x09\x63\x20\x23\x44\x30\x44\x42\ -\x45\x32\x22\x2c\x0d\x0a\x22\x5b\x23\x09\x63\x20\x23\x37\x32\x39\ -\x35\x41\x46\x22\x2c\x0d\x0a\x22\x7d\x23\x09\x63\x20\x23\x39\x31\ -\x41\x43\x42\x46\x22\x2c\x0d\x0a\x22\x7c\x23\x09\x63\x20\x23\x38\ -\x37\x41\x35\x42\x41\x22\x2c\x0d\x0a\x22\x31\x23\x09\x63\x20\x23\ -\x42\x44\x43\x44\x44\x38\x22\x2c\x0d\x0a\x22\x32\x23\x09\x63\x20\ -\x23\x38\x31\x37\x41\x39\x45\x22\x2c\x0d\x0a\x22\x33\x23\x09\x63\ -\x20\x23\x33\x44\x33\x31\x36\x42\x22\x2c\x0d\x0a\x22\x34\x23\x09\ -\x63\x20\x23\x44\x45\x44\x43\x45\x35\x22\x2c\x0d\x0a\x22\x35\x23\ -\x09\x63\x20\x23\x43\x46\x43\x44\x44\x41\x22\x2c\x0d\x0a\x22\x36\ -\x23\x09\x63\x20\x23\x32\x44\x32\x33\x36\x32\x22\x2c\x0d\x0a\x22\ -\x37\x23\x09\x63\x20\x23\x37\x38\x37\x31\x39\x38\x22\x2c\x0d\x0a\ -\x22\x38\x23\x09\x63\x20\x23\x46\x42\x46\x41\x46\x41\x22\x2c\x0d\ -\x0a\x22\x39\x23\x09\x63\x20\x23\x39\x45\x39\x43\x42\x38\x22\x2c\ -\x0d\x0a\x22\x30\x23\x09\x63\x20\x23\x38\x35\x37\x45\x39\x46\x22\ -\x2c\x0d\x0a\x22\x61\x23\x09\x63\x20\x23\x46\x36\x46\x36\x46\x37\ -\x22\x2c\x0d\x0a\x22\x62\x23\x09\x63\x20\x23\x38\x45\x38\x37\x41\ -\x35\x22\x2c\x0d\x0a\x22\x63\x23\x09\x63\x20\x23\x35\x35\x34\x41\ -\x37\x43\x22\x2c\x0d\x0a\x22\x64\x23\x09\x63\x20\x23\x46\x38\x46\ -\x37\x46\x38\x22\x2c\x0d\x0a\x22\x65\x23\x09\x63\x20\x23\x37\x33\ -\x36\x39\x38\x46\x22\x2c\x0d\x0a\x22\x66\x23\x09\x63\x20\x23\x39\ -\x31\x41\x42\x42\x46\x22\x2c\x0d\x0a\x22\x67\x23\x09\x63\x20\x23\ -\x32\x33\x35\x45\x38\x39\x22\x2c\x0d\x0a\x22\x68\x23\x09\x63\x20\ -\x23\x38\x46\x41\x38\x42\x44\x22\x2c\x0d\x0a\x22\x69\x23\x09\x63\ -\x20\x23\x41\x33\x39\x43\x42\x35\x22\x2c\x0d\x0a\x22\x6a\x23\x09\ -\x63\x20\x23\x37\x43\x37\x32\x39\x35\x22\x2c\x0d\x0a\x22\x6b\x23\ -\x09\x63\x20\x23\x34\x46\x34\x34\x37\x36\x22\x2c\x0d\x0a\x22\x6c\ -\x23\x09\x63\x20\x23\x32\x43\x32\x30\x35\x46\x22\x2c\x0d\x0a\x22\ -\x6d\x23\x09\x63\x20\x23\x35\x45\x35\x35\x38\x34\x22\x2c\x0d\x0a\ -\x22\x6e\x23\x09\x63\x20\x23\x45\x31\x45\x35\x45\x39\x22\x2c\x0d\ -\x0a\x22\x6f\x23\x09\x63\x20\x23\x39\x38\x42\x31\x43\x34\x22\x2c\ -\x0d\x0a\x22\x70\x23\x09\x63\x20\x23\x44\x43\x45\x34\x45\x39\x22\ -\x2c\x0d\x0a\x22\x71\x23\x09\x63\x20\x23\x44\x46\x45\x36\x45\x42\ -\x22\x2c\x0d\x0a\x22\x72\x23\x09\x63\x20\x23\x46\x38\x46\x39\x46\ 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-\x0d\x0a\x22\x46\x23\x09\x63\x20\x23\x46\x33\x46\x32\x46\x35\x22\ -\x2c\x0d\x0a\x22\x47\x23\x09\x63\x20\x23\x45\x39\x45\x38\x45\x44\ -\x22\x2c\x0d\x0a\x22\x48\x23\x09\x63\x20\x23\x46\x38\x46\x38\x46\ -\x39\x22\x2c\x0d\x0a\x22\x49\x23\x09\x63\x20\x23\x45\x33\x45\x31\ -\x45\x38\x22\x2c\x0d\x0a\x22\x4a\x23\x09\x63\x20\x23\x39\x37\x39\ -\x30\x41\x42\x22\x2c\x0d\x0a\x22\x4b\x23\x09\x63\x20\x23\x33\x39\ -\x32\x42\x36\x32\x22\x2c\x0d\x0a\x22\x4c\x23\x09\x63\x20\x23\x32\ -\x44\x33\x38\x36\x44\x22\x2c\x0d\x0a\x22\x4d\x23\x09\x63\x20\x23\ -\x32\x30\x35\x37\x38\x34\x22\x2c\x0d\x0a\x22\x4e\x23\x09\x63\x20\ -\x23\x38\x33\x41\x34\x42\x42\x22\x2c\x0d\x0a\x22\x4f\x23\x09\x63\ -\x20\x23\x46\x41\x46\x39\x46\x41\x22\x2c\x0d\x0a\x22\x50\x23\x09\ -\x63\x20\x23\x42\x34\x41\x46\x43\x34\x22\x2c\x0d\x0a\x22\x51\x23\ -\x09\x63\x20\x23\x36\x37\x35\x46\x38\x43\x22\x2c\x0d\x0a\x22\x52\ -\x23\x09\x63\x20\x23\x33\x37\x32\x41\x36\x31\x22\x2c\x0d\x0a\x22\ -\x53\x23\x09\x63\x20\x23\x35\x31\x34\x38\x37\x43\x22\x2c\x0d\x0a\ -\x22\x54\x23\x09\x63\x20\x23\x46\x30\x46\x30\x46\x32\x22\x2c\x0d\ -\x0a\x22\x55\x23\x09\x63\x20\x23\x41\x46\x43\x34\x44\x30\x22\x2c\ -\x0d\x0a\x22\x56\x23\x09\x63\x20\x23\x43\x32\x44\x32\x44\x42\x22\ -\x2c\x0d\x0a\x22\x57\x23\x09\x63\x20\x23\x38\x36\x41\x35\x42\x41\ -\x22\x2c\x0d\x0a\x22\x58\x23\x09\x63\x20\x23\x38\x45\x41\x42\x42\ -\x46\x22\x2c\x0d\x0a\x22\x59\x23\x09\x63\x20\x23\x36\x35\x35\x43\ -\x38\x41\x22\x2c\x0d\x0a\x22\x5a\x23\x09\x63\x20\x23\x34\x37\x33\ -\x41\x37\x30\x22\x2c\x0d\x0a\x22\x60\x23\x09\x63\x20\x23\x44\x44\ -\x44\x42\x45\x34\x22\x2c\x0d\x0a\x22\x20\x24\x09\x63\x20\x23\x44\ -\x33\x44\x30\x44\x43\x22\x2c\x0d\x0a\x22\x2e\x24\x09\x63\x20\x23\ -\x33\x34\x32\x38\x36\x35\x22\x2c\x0d\x0a\x22\x2b\x24\x09\x63\x20\ -\x23\x33\x44\x33\x37\x37\x30\x22\x2c\x0d\x0a\x22\x40\x24\x09\x63\ -\x20\x23\x45\x32\x45\x33\x45\x41\x22\x2c\x0d\x0a\x22\x23\x24\x09\ -\x63\x20\x23\x43\x38\x43\x35\x44\x33\x22\x2c\x0d\x0a\x22\x24\x24\ -\x09\x63\x20\x23\x32\x41\x31\x45\x35\x45\x22\x2c\x0d\x0a\x22\x25\ -\x24\x09\x63\x20\x23\x37\x38\x37\x31\x39\x36\x22\x2c\x0d\x0a\x22\ -\x26\x24\x09\x63\x20\x23\x43\x36\x43\x33\x44\x32\x22\x2c\x0d\x0a\ -\x22\x2a\x24\x09\x63\x20\x23\x36\x42\x36\x33\x38\x46\x22\x2c\x0d\ -\x0a\x22\x3d\x24\x09\x63\x20\x23\x37\x31\x36\x38\x39\x32\x22\x2c\ -\x0d\x0a\x22\x2d\x24\x09\x63\x20\x23\x36\x44\x36\x33\x38\x43\x22\ -\x2c\x0d\x0a\x22\x3b\x24\x09\x63\x20\x23\x34\x43\x34\x30\x37\x34\ -\x22\x2c\x0d\x0a\x22\x3e\x24\x09\x63\x20\x23\x33\x30\x32\x32\x35\ -\x46\x22\x2c\x0d\x0a\x22\x2c\x24\x09\x63\x20\x23\x33\x33\x32\x34\ -\x36\x31\x22\x2c\x0d\x0a\x22\x27\x24\x09\x63\x20\x23\x32\x41\x33\ -\x31\x36\x38\x22\x2c\x0d\x0a\x22\x29\x24\x09\x63\x20\x23\x31\x34\ -\x34\x35\x37\x37\x22\x2c\x0d\x0a\x22\x21\x24\x09\x63\x20\x23\x33\ -\x35\x35\x36\x38\x34\x22\x2c\x0d\x0a\x22\x7e\x24\x09\x63\x20\x23\ -\x42\x43\x42\x39\x43\x41\x22\x2c\x0d\x0a\x22\x7b\x24\x09\x63\x20\ -\x23\x45\x31\x44\x46\x45\x36\x22\x2c\x0d\x0a\x22\x5d\x24\x09\x63\ -\x20\x23\x36\x41\x36\x32\x38\x43\x22\x2c\x0d\x0a\x22\x5e\x24\x09\ -\x63\x20\x23\x32\x38\x31\x42\x35\x44\x22\x2c\x0d\x0a\x22\x2f\x24\ -\x09\x63\x20\x23\x34\x37\x33\x45\x37\x33\x22\x2c\x0d\x0a\x22\x28\ -\x24\x09\x63\x20\x23\x45\x32\x45\x33\x45\x38\x22\x2c\x0d\x0a\x22\ -\x5f\x24\x09\x63\x20\x23\x39\x35\x42\x30\x43\x32\x22\x2c\x0d\x0a\ -\x22\x3a\x24\x09\x63\x20\x23\x38\x30\x41\x31\x42\x37\x22\x2c\x0d\ -\x0a\x22\x3c\x24\x09\x63\x20\x23\x42\x34\x43\x38\x44\x34\x22\x2c\ -\x0d\x0a\x22\x5b\x24\x09\x63\x20\x23\x37\x45\x41\x31\x42\x38\x22\ -\x2c\x0d\x0a\x22\x7d\x24\x09\x63\x20\x23\x36\x36\x35\x44\x38\x41\ -\x22\x2c\x0d\x0a\x22\x7c\x24\x09\x63\x20\x23\x32\x45\x32\x30\x35\ -\x45\x22\x2c\x0d\x0a\x22\x31\x24\x09\x63\x20\x23\x34\x41\x33\x45\ -\x37\x31\x22\x2c\x0d\x0a\x22\x32\x24\x09\x63\x20\x23\x44\x34\x44\ -\x31\x44\x43\x22\x2c\x0d\x0a\x22\x33\x24\x09\x63\x20\x23\x33\x38\ -\x32\x43\x36\x37\x22\x2c\x0d\x0a\x22\x34\x24\x09\x63\x20\x23\x35\ -\x32\x34\x46\x38\x31\x22\x2c\x0d\x0a\x22\x35\x24\x09\x63\x20\x23\ -\x45\x44\x46\x30\x46\x33\x22\x2c\x0d\x0a\x22\x36\x24\x09\x63\x20\ -\x23\x42\x36\x42\x32\x43\x37\x22\x2c\x0d\x0a\x22\x37\x24\x09\x63\ -\x20\x23\x33\x30\x32\x35\x36\x33\x22\x2c\x0d\x0a\x22\x38\x24\x09\ -\x63\x20\x23\x42\x43\x42\x38\x43\x41\x22\x2c\x0d\x0a\x22\x39\x24\ -\x09\x63\x20\x23\x44\x37\x44\x36\x44\x46\x22\x2c\x0d\x0a\x22\x30\ -\x24\x09\x63\x20\x23\x38\x35\x37\x45\x41\x31\x22\x2c\x0d\x0a\x22\ -\x61\x24\x09\x63\x20\x23\x36\x45\x36\x35\x39\x30\x22\x2c\x0d\x0a\ -\x22\x62\x24\x09\x63\x20\x23\x36\x45\x36\x35\x38\x44\x22\x2c\x0d\ -\x0a\x22\x63\x24\x09\x63\x20\x23\x36\x37\x35\x45\x38\x37\x22\x2c\ -\x0d\x0a\x22\x64\x24\x09\x63\x20\x23\x35\x33\x34\x38\x37\x39\x22\ -\x2c\x0d\x0a\x22\x65\x24\x09\x63\x20\x23\x32\x39\x32\x41\x36\x35\ -\x22\x2c\x0d\x0a\x22\x66\x24\x09\x63\x20\x23\x31\x32\x33\x46\x37\ -\x34\x22\x2c\x0d\x0a\x22\x67\x24\x09\x63\x20\x23\x31\x35\x33\x42\ -\x37\x31\x22\x2c\x0d\x0a\x22\x68\x24\x09\x63\x20\x23\x32\x42\x32\ -\x35\x36\x32\x22\x2c\x0d\x0a\x22\x69\x24\x09\x63\x20\x23\x33\x44\ -\x33\x30\x36\x39\x22\x2c\x0d\x0a\x22\x6a\x24\x09\x63\x20\x23\x39\ -\x42\x39\x35\x41\x45\x22\x2c\x0d\x0a\x22\x6b\x24\x09\x63\x20\x23\ -\x43\x30\x42\x43\x43\x43\x22\x2c\x0d\x0a\x22\x6c\x24\x09\x63\x20\ -\x23\x45\x37\x45\x36\x45\x42\x22\x2c\x0d\x0a\x22\x6d\x24\x09\x63\ -\x20\x23\x42\x31\x41\x44\x43\x32\x22\x2c\x0d\x0a\x22\x6e\x24\x09\ -\x63\x20\x23\x33\x39\x32\x43\x36\x34\x22\x2c\x0d\x0a\x22\x6f\x24\ -\x09\x63\x20\x23\x32\x37\x31\x42\x35\x43\x22\x2c\x0d\x0a\x22\x70\ -\x24\x09\x63\x20\x23\x34\x43\x34\x33\x37\x38\x22\x2c\x0d\x0a\x22\ -\x71\x24\x09\x63\x20\x23\x45\x45\x45\x45\x46\x30\x22\x2c\x0d\x0a\ -\x22\x72\x24\x09\x63\x20\x23\x39\x46\x42\x38\x43\x38\x22\x2c\x0d\ -\x0a\x22\x73\x24\x09\x63\x20\x23\x41\x43\x43\x32\x44\x30\x22\x2c\ -\x0d\x0a\x22\x74\x24\x09\x63\x20\x23\x45\x39\x45\x46\x46\x31\x22\ -\x2c\x0d\x0a\x22\x75\x24\x09\x63\x20\x23\x43\x31\x44\x32\x44\x44\ -\x22\x2c\x0d\x0a\x22\x76\x24\x09\x63\x20\x23\x37\x31\x36\x39\x39\ -\x33\x22\x2c\x0d\x0a\x22\x77\x24\x09\x63\x20\x23\x32\x45\x32\x31\ -\x36\x30\x22\x2c\x0d\x0a\x22\x78\x24\x09\x63\x20\x23\x33\x39\x32\ -\x44\x36\x38\x22\x2c\x0d\x0a\x22\x79\x24\x09\x63\x20\x23\x39\x31\ -\x38\x46\x41\x46\x22\x2c\x0d\x0a\x22\x7a\x24\x09\x63\x20\x23\x38\ -\x39\x38\x32\x41\x35\x22\x2c\x0d\x0a\x22\x41\x24\x09\x63\x20\x23\ -\x39\x35\x38\x46\x41\x45\x22\x2c\x0d\x0a\x22\x42\x24\x09\x63\x20\ -\x23\x46\x45\x46\x44\x46\x43\x22\x2c\x0d\x0a\x22\x43\x24\x09\x63\ -\x20\x23\x46\x39\x46\x39\x46\x41\x22\x2c\x0d\x0a\x22\x44\x24\x09\ -\x63\x20\x23\x46\x37\x46\x36\x46\x38\x22\x2c\x0d\x0a\x22\x45\x24\ -\x09\x63\x20\x23\x43\x39\x44\x31\x44\x42\x22\x2c\x0d\x0a\x22\x46\ -\x24\x09\x63\x20\x23\x33\x43\x36\x37\x38\x46\x22\x2c\x0d\x0a\x22\ -\x47\x24\x09\x63\x20\x23\x31\x30\x33\x41\x37\x32\x22\x2c\x0d\x0a\ -\x22\x48\x24\x09\x63\x20\x23\x33\x34\x33\x35\x36\x44\x22\x2c\x0d\ -\x0a\x22\x49\x24\x09\x63\x20\x23\x35\x38\x34\x46\x37\x45\x22\x2c\ -\x0d\x0a\x22\x4a\x24\x09\x63\x20\x23\x36\x37\x35\x45\x38\x39\x22\ -\x2c\x0d\x0a\x22\x4b\x24\x09\x63\x20\x23\x32\x43\x31\x46\x35\x46\ -\x22\x2c\x0d\x0a\x22\x4c\x24\x09\x63\x20\x23\x36\x34\x35\x43\x38\ -\x39\x22\x2c\x0d\x0a\x22\x4d\x24\x09\x63\x20\x23\x45\x36\x45\x35\ -\x45\x42\x22\x2c\x0d\x0a\x22\x4e\x24\x09\x63\x20\x23\x44\x32\x43\ -\x46\x44\x42\x22\x2c\x0d\x0a\x22\x4f\x24\x09\x63\x20\x23\x34\x31\ -\x33\x35\x36\x41\x22\x2c\x0d\x0a\x22\x50\x24\x09\x63\x20\x23\x32\ -\x35\x31\x38\x35\x42\x22\x2c\x0d\x0a\x22\x51\x24\x09\x63\x20\x23\ -\x35\x35\x34\x44\x37\x45\x22\x2c\x0d\x0a\x22\x52\x24\x09\x63\x20\ -\x23\x46\x32\x46\x32\x46\x34\x22\x2c\x0d\x0a\x22\x53\x24\x09\x63\ -\x20\x23\x41\x42\x43\x30\x43\x45\x22\x2c\x0d\x0a\x22\x54\x24\x09\ -\x63\x20\x23\x39\x36\x42\x32\x43\x33\x22\x2c\x0d\x0a\x22\x55\x24\ -\x09\x63\x20\x23\x45\x35\x45\x43\x45\x46\x22\x2c\x0d\x0a\x22\x56\ -\x24\x09\x63\x20\x23\x46\x31\x46\x35\x46\x35\x22\x2c\x0d\x0a\x22\ -\x57\x24\x09\x63\x20\x23\x38\x42\x38\x34\x41\x35\x22\x2c\x0d\x0a\ -\x22\x58\x24\x09\x63\x20\x23\x32\x35\x31\x38\x35\x39\x22\x2c\x0d\ -\x0a\x22\x59\x24\x09\x63\x20\x23\x33\x31\x32\x33\x35\x46\x22\x2c\ -\x0d\x0a\x22\x5a\x24\x09\x63\x20\x23\x44\x44\x44\x42\x45\x35\x22\ -\x2c\x0d\x0a\x22\x60\x24\x09\x63\x20\x23\x35\x30\x34\x35\x37\x39\ -\x22\x2c\x0d\x0a\x22\x20\x25\x09\x63\x20\x23\x33\x43\x33\x32\x36\ -\x44\x22\x2c\x0d\x0a\x22\x2e\x25\x09\x63\x20\x23\x37\x41\x37\x36\ -\x39\x44\x22\x2c\x0d\x0a\x22\x2b\x25\x09\x63\x20\x23\x45\x34\x45\ -\x37\x45\x43\x22\x2c\x0d\x0a\x22\x40\x25\x09\x63\x20\x23\x44\x41\ -\x44\x38\x45\x31\x22\x2c\x0d\x0a\x22\x23\x25\x09\x63\x20\x23\x34\ -\x43\x34\x31\x37\x37\x22\x2c\x0d\x0a\x22\x24\x25\x09\x63\x20\x23\ -\x38\x38\x38\x31\x41\x34\x22\x2c\x0d\x0a\x22\x25\x25\x09\x63\x20\ -\x23\x45\x44\x45\x43\x45\x46\x22\x2c\x0d\x0a\x22\x26\x25\x09\x63\ -\x20\x23\x44\x34\x44\x32\x44\x44\x22\x2c\x0d\x0a\x22\x2a\x25\x09\ -\x63\x20\x23\x43\x42\x43\x38\x44\x36\x22\x2c\x0d\x0a\x22\x3d\x25\ -\x09\x63\x20\x23\x44\x30\x43\x44\x44\x39\x22\x2c\x0d\x0a\x22\x2d\ -\x25\x09\x63\x20\x23\x44\x37\x44\x35\x44\x46\x22\x2c\x0d\x0a\x22\ -\x3b\x25\x09\x63\x20\x23\x43\x46\x44\x36\x44\x46\x22\x2c\x0d\x0a\ -\x22\x3e\x25\x09\x63\x20\x23\x36\x33\x38\x44\x41\x41\x22\x2c\x0d\ -\x0a\x22\x2c\x25\x09\x63\x20\x23\x34\x33\x37\x34\x39\x38\x22\x2c\ -\x0d\x0a\x22\x27\x25\x09\x63\x20\x23\x35\x30\x35\x36\x38\x34\x22\ -\x2c\x0d\x0a\x22\x29\x25\x09\x63\x20\x23\x39\x35\x38\x46\x41\x42\ -\x22\x2c\x0d\x0a\x22\x21\x25\x09\x63\x20\x23\x46\x30\x45\x46\x46\ -\x32\x22\x2c\x0d\x0a\x22\x7e\x25\x09\x63\x20\x23\x45\x46\x45\x46\ -\x46\x32\x22\x2c\x0d\x0a\x22\x7b\x25\x09\x63\x20\x23\x37\x37\x37\ -\x30\x39\x37\x22\x2c\x0d\x0a\x22\x5d\x25\x09\x63\x20\x23\x32\x45\ -\x32\x31\x36\x31\x22\x2c\x0d\x0a\x22\x5e\x25\x09\x63\x20\x23\x36\ -\x33\x35\x42\x38\x39\x22\x2c\x0d\x0a\x22\x2f\x25\x09\x63\x20\x23\ -\x45\x38\x45\x37\x45\x44\x22\x2c\x0d\x0a\x22\x28\x25\x09\x63\x20\ -\x23\x42\x35\x42\x31\x43\x35\x22\x2c\x0d\x0a\x22\x5f\x25\x09\x63\ -\x20\x23\x36\x37\x36\x30\x38\x42\x22\x2c\x0d\x0a\x22\x3a\x25\x09\ -\x63\x20\x23\x46\x39\x46\x39\x46\x39\x22\x2c\x0d\x0a\x22\x3c\x25\ -\x09\x63\x20\x23\x43\x41\x44\x37\x44\x46\x22\x2c\x0d\x0a\x22\x5b\ -\x25\x09\x63\x20\x23\x36\x30\x38\x41\x41\x37\x22\x2c\x0d\x0a\x22\ -\x7d\x25\x09\x63\x20\x23\x37\x41\x39\x44\x42\x35\x22\x2c\x0d\x0a\ -\x22\x7c\x25\x09\x63\x20\x23\x41\x37\x42\x45\x43\x43\x22\x2c\x0d\ -\x0a\x22\x31\x25\x09\x63\x20\x23\x41\x44\x41\x38\x42\x45\x22\x2c\ -\x0d\x0a\x22\x32\x25\x09\x63\x20\x23\x32\x38\x31\x43\x35\x44\x22\ -\x2c\x0d\x0a\x22\x33\x25\x09\x63\x20\x23\x32\x45\x32\x31\x35\x46\ -\x22\x2c\x0d\x0a\x22\x34\x25\x09\x63\x20\x23\x33\x33\x32\x35\x36\ -\x31\x22\x2c\x0d\x0a\x22\x35\x25\x09\x63\x20\x23\x34\x33\x33\x37\ -\x36\x45\x22\x2c\x0d\x0a\x22\x36\x25\x09\x63\x20\x23\x45\x31\x44\ -\x46\x45\x38\x22\x2c\x0d\x0a\x22\x37\x25\x09\x63\x20\x23\x45\x30\ -\x44\x46\x45\x38\x22\x2c\x0d\x0a\x22\x38\x25\x09\x63\x20\x23\x46\ -\x32\x46\x31\x46\x33\x22\x2c\x0d\x0a\x22\x39\x25\x09\x63\x20\x23\ -\x37\x46\x37\x38\x39\x45\x22\x2c\x0d\x0a\x22\x30\x25\x09\x63\x20\ -\x23\x35\x33\x34\x39\x37\x44\x22\x2c\x0d\x0a\x22\x61\x25\x09\x63\ -\x20\x23\x46\x30\x45\x46\x46\x33\x22\x2c\x0d\x0a\x22\x62\x25\x09\ -\x63\x20\x23\x45\x38\x45\x36\x45\x43\x22\x2c\x0d\x0a\x22\x63\x25\ -\x09\x63\x20\x23\x36\x35\x35\x44\x38\x39\x22\x2c\x0d\x0a\x22\x64\ -\x25\x09\x63\x20\x23\x32\x46\x32\x34\x36\x31\x22\x2c\x0d\x0a\x22\ -\x65\x25\x09\x63\x20\x23\x33\x33\x32\x39\x36\x34\x22\x2c\x0d\x0a\ -\x22\x66\x25\x09\x63\x20\x23\x33\x34\x33\x32\x36\x42\x22\x2c\x0d\ -\x0a\x22\x67\x25\x09\x63\x20\x23\x32\x43\x35\x32\x38\x32\x22\x2c\ -\x0d\x0a\x22\x68\x25\x09\x63\x20\x23\x34\x35\x37\x38\x39\x43\x22\ -\x2c\x0d\x0a\x22\x69\x25\x09\x63\x20\x23\x42\x44\x43\x43\x44\x37\ -\x22\x2c\x0d\x0a\x22\x6a\x25\x09\x63\x20\x23\x36\x42\x36\x32\x38\ -\x44\x22\x2c\x0d\x0a\x22\x6b\x25\x09\x63\x20\x23\x36\x43\x36\x34\ -\x38\x46\x22\x2c\x0d\x0a\x22\x6c\x25\x09\x63\x20\x23\x43\x43\x43\ -\x39\x44\x37\x22\x2c\x0d\x0a\x22\x6d\x25\x09\x63\x20\x23\x45\x35\ -\x45\x34\x45\x41\x22\x2c\x0d\x0a\x22\x6e\x25\x09\x63\x20\x23\x37\ -\x42\x37\x32\x39\x36\x22\x2c\x0d\x0a\x22\x6f\x25\x09\x63\x20\x23\ -\x33\x33\x32\x35\x35\x46\x22\x2c\x0d\x0a\x22\x70\x25\x09\x63\x20\ -\x23\x38\x37\x38\x31\x41\x33\x22\x2c\x0d\x0a\x22\x71\x25\x09\x63\ -\x20\x23\x46\x32\x46\x35\x46\x35\x22\x2c\x0d\x0a\x22\x72\x25\x09\ -\x63\x20\x23\x41\x46\x43\x32\x43\x46\x22\x2c\x0d\x0a\x22\x73\x25\ -\x09\x63\x20\x23\x45\x46\x46\x33\x46\x34\x22\x2c\x0d\x0a\x22\x74\ -\x25\x09\x63\x20\x23\x46\x33\x46\x36\x46\x37\x22\x2c\x0d\x0a\x22\ -\x75\x25\x09\x63\x20\x23\x44\x30\x43\x44\x44\x38\x22\x2c\x0d\x0a\ -\x22\x76\x25\x09\x63\x20\x23\x33\x42\x32\x46\x36\x39\x22\x2c\x0d\ -\x0a\x22\x77\x25\x09\x63\x20\x23\x32\x39\x31\x42\x35\x42\x22\x2c\ -\x0d\x0a\x22\x78\x25\x09\x63\x20\x23\x33\x44\x33\x31\x36\x41\x22\ -\x2c\x0d\x0a\x22\x79\x25\x09\x63\x20\x23\x46\x37\x46\x37\x46\x38\ -\x22\x2c\x0d\x0a\x22\x7a\x25\x09\x63\x20\x23\x45\x45\x45\x44\x46\ -\x31\x22\x2c\x0d\x0a\x22\x41\x25\x09\x63\x20\x23\x43\x32\x42\x46\ -\x43\x44\x22\x2c\x0d\x0a\x22\x42\x25\x09\x63\x20\x23\x37\x33\x36\ -\x43\x39\x34\x22\x2c\x0d\x0a\x22\x43\x25\x09\x63\x20\x23\x44\x45\ -\x44\x43\x45\x33\x22\x2c\x0d\x0a\x22\x44\x25\x09\x63\x20\x23\x44\ -\x30\x43\x45\x44\x41\x22\x2c\x0d\x0a\x22\x45\x25\x09\x63\x20\x23\ -\x42\x33\x41\x46\x43\x34\x22\x2c\x0d\x0a\x22\x46\x25\x09\x63\x20\ -\x23\x39\x32\x39\x34\x41\x44\x22\x2c\x0d\x0a\x22\x47\x25\x09\x63\ -\x20\x23\x33\x31\x35\x36\x38\x32\x22\x2c\x0d\x0a\x22\x48\x25\x09\ -\x63\x20\x23\x34\x31\x37\x36\x39\x43\x22\x2c\x0d\x0a\x22\x49\x25\ -\x09\x63\x20\x23\x42\x43\x43\x46\x44\x41\x22\x2c\x0d\x0a\x22\x4a\ -\x25\x09\x63\x20\x23\x42\x39\x42\x36\x43\x38\x22\x2c\x0d\x0a\x22\ -\x4b\x25\x09\x63\x20\x23\x33\x39\x32\x45\x36\x41\x22\x2c\x0d\x0a\ -\x22\x4c\x25\x09\x63\x20\x23\x37\x39\x37\x32\x39\x38\x22\x2c\x0d\ -\x0a\x22\x4d\x25\x09\x63\x20\x23\x44\x30\x43\x45\x44\x39\x22\x2c\ -\x0d\x0a\x22\x4e\x25\x09\x63\x20\x23\x46\x41\x46\x41\x46\x41\x22\ -\x2c\x0d\x0a\x22\x4f\x25\x09\x63\x20\x23\x44\x42\x44\x39\x45\x31\ -\x22\x2c\x0d\x0a\x22\x50\x25\x09\x63\x20\x23\x38\x44\x38\x36\x41\ -\x34\x22\x2c\x0d\x0a\x22\x51\x25\x09\x63\x20\x23\x41\x44\x41\x39\ -\x43\x30\x22\x2c\x0d\x0a\x22\x52\x25\x09\x63\x20\x23\x44\x44\x45\ -\x36\x45\x41\x22\x2c\x0d\x0a\x22\x53\x25\x09\x63\x20\x23\x42\x32\ -\x43\x36\x44\x32\x22\x2c\x0d\x0a\x22\x54\x25\x09\x63\x20\x23\x38\ -\x46\x41\x43\x42\x46\x22\x2c\x0d\x0a\x22\x55\x25\x09\x63\x20\x23\ -\x43\x37\x44\x36\x44\x45\x22\x2c\x0d\x0a\x22\x56\x25\x09\x63\x20\ -\x23\x35\x45\x35\x33\x38\x30\x22\x2c\x0d\x0a\x22\x57\x25\x09\x63\ -\x20\x23\x32\x46\x32\x33\x36\x30\x22\x2c\x0d\x0a\x22\x58\x25\x09\ -\x63\x20\x23\x32\x33\x31\x37\x35\x39\x22\x2c\x0d\x0a\x22\x59\x25\ -\x09\x63\x20\x23\x36\x32\x35\x39\x38\x34\x22\x2c\x0d\x0a\x22\x5a\ -\x25\x09\x63\x20\x23\x36\x39\x36\x31\x38\x41\x22\x2c\x0d\x0a\x22\ -\x60\x25\x09\x63\x20\x23\x35\x45\x35\x38\x38\x36\x22\x2c\x0d\x0a\ -\x22\x20\x26\x09\x63\x20\x23\x35\x41\x35\x32\x38\x34\x22\x2c\x0d\ -\x0a\x22\x2e\x26\x09\x63\x20\x23\x35\x41\x35\x31\x38\x33\x22\x2c\ -\x0d\x0a\x22\x2b\x26\x09\x63\x20\x23\x34\x44\x34\x33\x37\x39\x22\ -\x2c\x0d\x0a\x22\x40\x26\x09\x63\x20\x23\x33\x30\x32\x35\x36\x32\ -\x22\x2c\x0d\x0a\x22\x23\x26\x09\x63\x20\x23\x36\x35\x35\x43\x38\ -\x39\x22\x2c\x0d\x0a\x22\x24\x26\x09\x63\x20\x23\x41\x42\x41\x36\ -\x42\x45\x22\x2c\x0d\x0a\x22\x25\x26\x09\x63\x20\x23\x43\x45\x44\ -\x34\x44\x45\x22\x2c\x0d\x0a\x22\x26\x26\x09\x63\x20\x23\x36\x36\ -\x38\x46\x41\x43\x22\x2c\x0d\x0a\x22\x2a\x26\x09\x63\x20\x23\x32\ -\x39\x35\x42\x38\x38\x22\x2c\x0d\x0a\x22\x3d\x26\x09\x63\x20\x23\ -\x38\x32\x39\x31\x41\x44\x22\x2c\x0d\x0a\x22\x2d\x26\x09\x63\x20\ -\x23\x39\x34\x38\x45\x41\x41\x22\x2c\x0d\x0a\x22\x3b\x26\x09\x63\ -\x20\x23\x34\x44\x34\x33\x37\x35\x22\x2c\x0d\x0a\x22\x3e\x26\x09\ -\x63\x20\x23\x33\x45\x33\x33\x36\x44\x22\x2c\x0d\x0a\x22\x2c\x26\ -\x09\x63\x20\x23\x36\x44\x36\x34\x38\x44\x22\x2c\x0d\x0a\x22\x27\ -\x26\x09\x63\x20\x23\x38\x38\x38\x30\x41\x30\x22\x2c\x0d\x0a\x22\ -\x29\x26\x09\x63\x20\x23\x38\x39\x38\x31\x41\x31\x22\x2c\x0d\x0a\ -\x22\x21\x26\x09\x63\x20\x23\x37\x37\x36\x45\x39\x33\x22\x2c\x0d\ -\x0a\x22\x7e\x26\x09\x63\x20\x23\x35\x34\x34\x38\x37\x37\x22\x2c\ 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-\x33\x26\x09\x63\x20\x23\x32\x34\x32\x44\x36\x38\x22\x2c\x0d\x0a\ -\x22\x34\x26\x09\x63\x20\x23\x33\x38\x32\x43\x36\x35\x22\x2c\x0d\ -\x0a\x22\x35\x26\x09\x63\x20\x23\x32\x36\x31\x41\x35\x41\x22\x2c\ -\x0d\x0a\x22\x36\x26\x09\x63\x20\x23\x33\x36\x32\x39\x36\x32\x22\ -\x2c\x0d\x0a\x22\x37\x26\x09\x63\x20\x23\x45\x34\x45\x41\x45\x45\ -\x22\x2c\x0d\x0a\x22\x38\x26\x09\x63\x20\x23\x42\x44\x43\x45\x44\ -\x38\x22\x2c\x0d\x0a\x22\x39\x26\x09\x63\x20\x23\x42\x46\x42\x43\ -\x43\x44\x22\x2c\x0d\x0a\x22\x30\x26\x09\x63\x20\x23\x32\x46\x32\ -\x34\x36\x32\x22\x2c\x0d\x0a\x22\x61\x26\x09\x63\x20\x23\x32\x43\ -\x31\x45\x35\x45\x22\x2c\x0d\x0a\x22\x62\x26\x09\x63\x20\x23\x32\ -\x42\x32\x43\x36\x33\x22\x2c\x0d\x0a\x22\x63\x26\x09\x63\x20\x23\ -\x31\x39\x34\x30\x37\x33\x22\x2c\x0d\x0a\x22\x64\x26\x09\x63\x20\ -\x23\x31\x34\x34\x31\x37\x36\x22\x2c\x0d\x0a\x22\x65\x26\x09\x63\ -\x20\x23\x32\x36\x32\x44\x36\x35\x22\x2c\x0d\x0a\x22\x66\x26\x09\ 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-\x2c\x0d\x0a\x22\x47\x2a\x09\x63\x20\x23\x34\x36\x36\x37\x39\x30\ -\x22\x2c\x0d\x0a\x22\x48\x2a\x09\x63\x20\x23\x31\x31\x34\x38\x37\ -\x42\x22\x2c\x0d\x0a\x22\x49\x2a\x09\x63\x20\x23\x30\x46\x33\x41\ -\x37\x31\x22\x2c\x0d\x0a\x22\x4a\x2a\x09\x63\x20\x23\x31\x41\x32\ -\x36\x36\x35\x22\x2c\x0d\x0a\x22\x4b\x2a\x09\x63\x20\x23\x32\x36\ -\x32\x31\x35\x46\x22\x2c\x0d\x0a\x22\x4c\x2a\x09\x63\x20\x23\x32\ -\x30\x32\x41\x36\x35\x22\x2c\x0d\x0a\x22\x4d\x2a\x09\x63\x20\x23\ -\x32\x43\x32\x30\x35\x45\x22\x2c\x0d\x0a\x22\x4e\x2a\x09\x63\x20\ -\x23\x39\x36\x39\x30\x41\x45\x22\x2c\x0d\x0a\x22\x4f\x2a\x09\x63\ -\x20\x23\x45\x42\x46\x30\x46\x31\x22\x2c\x0d\x0a\x22\x50\x2a\x09\ -\x63\x20\x23\x42\x35\x43\x38\x44\x33\x22\x2c\x0d\x0a\x22\x51\x2a\ -\x09\x63\x20\x23\x41\x32\x42\x41\x43\x39\x22\x2c\x0d\x0a\x22\x52\ -\x2a\x09\x63\x20\x23\x39\x32\x41\x45\x43\x31\x22\x2c\x0d\x0a\x22\ -\x53\x2a\x09\x63\x20\x23\x46\x30\x46\x33\x46\x34\x22\x2c\x0d\x0a\ 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-\x7c\x2d\x4c\x20\x4d\x20\x31\x2d\x32\x2d\x33\x2d\x34\x2d\x20\x20\ -\x20\x20\x20\x20\x20\x20\x20\x20\x20\x20\x20\x20\x20\x20\x20\x20\ -\x20\x20\x20\x20\x20\x20\x20\x20\x20\x20\x22\x2c\x0d\x0a\x22\x20\ -\x20\x20\x20\x20\x20\x20\x20\x20\x20\x20\x20\x20\x20\x20\x20\x20\ -\x20\x20\x20\x20\x20\x20\x20\x20\x20\x20\x20\x53\x25\x50\x2b\x35\ -\x2d\x36\x2d\x37\x2d\x38\x2d\x39\x2d\x30\x2d\x61\x2d\x62\x2d\x63\ -\x2d\x64\x2d\x2d\x2b\x65\x2d\x66\x2d\x20\x20\x20\x20\x20\x20\x20\ -\x20\x20\x20\x20\x20\x20\x20\x20\x20\x20\x20\x20\x20\x20\x20\x20\ -\x20\x20\x20\x20\x20\x20\x20\x20\x20\x20\x20\x20\x20\x20\x20\x22\ -\x2c\x0d\x0a\x22\x20\x20\x20\x20\x20\x20\x20\x20\x20\x20\x20\x20\ -\x20\x20\x20\x20\x20\x20\x20\x20\x20\x20\x20\x20\x20\x20\x20\x20\ -\x20\x20\x20\x20\x67\x2d\x53\x40\x68\x2d\x69\x2d\x6a\x2d\x6b\x2d\ -\x6c\x2d\x6d\x2d\x31\x2d\x6e\x2d\x26\x3d\x20\x20\x20\x20\x20\x20\ -\x20\x20\x20\x20\x20\x20\x20\x20\x20\x20\x20\x20\x20\x20\x20\x20\ -\x20\x20\x20\x20\x20\x20\x20\x20\x20\x20\x20\x20\x20\x20\x20\x20\ -\x20\x20\x20\x20\x22\x2c\x0d\x0a\x22\x20\x20\x20\x20\x20\x20\x20\ -\x20\x20\x20\x20\x20\x20\x20\x20\x20\x20\x20\x20\x20\x20\x20\x20\ -\x20\x20\x20\x20\x20\x20\x20\x20\x20\x20\x20\x20\x20\x20\x20\x7c\ -\x2d\x6f\x2d\x70\x2d\x53\x2a\x71\x2d\x72\x2d\x20\x20\x20\x20\x20\ -\x20\x20\x20\x20\x20\x20\x20\x20\x20\x20\x20\x20\x20\x20\x20\x20\ -\x20\x20\x20\x20\x20\x20\x20\x20\x20\x20\x20\x20\x20\x20\x20\x20\ -\x20\x20\x20\x20\x20\x20\x20\x20\x20\x22\x7d\x3b\x0d\x0a\ " qt_resource_name = b"\ @@ -9689,96 +9742,109 @@ \x07\x03\x7d\xc3\ \x00\x69\ \x00\x6d\x00\x61\x00\x67\x00\x65\x00\x73\ -\x00\x06\ -\x06\x8a\x9c\xb3\ -\x00\x61\ -\x00\x73\x00\x73\x00\x65\x00\x74\x00\x73\ -\x00\x0f\ -\x01\x69\xa8\x67\ +\x00\x05\ +\x00\x6f\xa6\x53\ +\x00\x69\ +\x00\x63\x00\x6f\x00\x6e\x00\x73\ +\x00\x03\ +\x00\x00\x6a\xe3\ +\x00\x64\ +\x00\x67\x00\x73\ +\x00\x0c\ +\x02\xc1\xfc\xc7\ \x00\x6e\ 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+\x00\x89\x64\x45\ +\x00\x61\ +\x00\x69\x00\x72\x00\x62\x00\x6f\x00\x72\x00\x6e\x00\x65\ +\x00\x07\ +\x0e\x88\xd0\x79\ +\x00\x67\ +\x00\x72\x00\x61\x00\x76\x00\x69\x00\x74\x00\x79\ +\x00\x0d\ +\x02\x91\x4e\x94\ +\x00\x63\ +\x00\x68\x00\x65\x00\x76\x00\x72\x00\x6f\x00\x6e\x00\x2d\x00\x72\x00\x69\x00\x67\x00\x68\x00\x74\ \x00\x10\ \x05\xe2\x69\x67\ \x00\x6d\ \x00\x65\x00\x74\x00\x65\x00\x72\x00\x5f\x00\x63\x00\x6f\x00\x6e\x00\x66\x00\x69\x00\x67\x00\x2e\x00\x70\x00\x6e\x00\x67\ -\x00\x0e\ -\x03\x1e\x07\xc7\ +\x00\x05\ +\x00\x6d\xc5\xf4\ \x00\x67\ -\x00\x65\x00\x6f\x00\x69\x00\x64\x00\x5f\x00\x69\x00\x63\x00\x6f\x00\x6e\x00\x2e\x00\x70\x00\x6e\x00\x67\ -\x00\x0f\ -\x0a\x1f\xa8\x07\ -\x00\x66\ -\x00\x6c\x00\x69\x00\x67\x00\x68\x00\x74\x00\x5f\x00\x69\x00\x63\x00\x6f\x00\x6e\x00\x2e\x00\x70\x00\x6e\x00\x67\ -\x00\x0f\ -\x04\x18\x96\x07\ -\x00\x66\ -\x00\x6f\x00\x6c\x00\x64\x00\x65\x00\x72\x00\x5f\x00\x6f\x00\x70\x00\x65\x00\x6e\x00\x2e\x00\x70\x00\x6e\x00\x67\ -\x00\x0d\ -\x0d\x10\x1d\x07\ -\x00\x62\ -\x00\x6f\x00\x61\x00\x74\x00\x5f\x00\x69\x00\x63\x00\x6f\x00\x6e\x00\x2e\x00\x70\x00\x6e\x00\x67\ -\x00\x0f\ -\x06\x53\x91\xa7\ -\x00\x62\ -\x00\x72\x00\x61\x00\x6e\x00\x63\x00\x68\x00\x2d\x00\x6f\x00\x70\x00\x65\x00\x6e\x00\x2e\x00\x70\x00\x6e\x00\x67\ -\x00\x0c\ -\x07\x3c\x74\x8d\ -\x00\x64\ -\x00\x67\x00\x73\x00\x5f\x00\x69\x00\x63\x00\x6f\x00\x6e\x00\x2e\x00\x78\x00\x70\x00\x6d\ +\x00\x65\x00\x6f\x00\x69\x00\x64\ " qt_resource_struct_v1 = b"\ -\x00\x00\x00\x00\x00\x02\x00\x00\x00\x01\x00\x00\x00\x01\ -\x00\x00\x00\x00\x00\x02\x00\x00\x00\x01\x00\x00\x00\x02\ -\x00\x00\x00\x12\x00\x02\x00\x00\x00\x0a\x00\x00\x00\x03\ -\x00\x00\x00\x24\x00\x00\x00\x00\x00\x01\x00\x00\x00\x00\ -\x00\x00\x00\xbc\x00\x00\x00\x00\x00\x01\x00\x00\x07\x76\ -\x00\x00\x01\x02\x00\x00\x00\x00\x00\x01\x00\x02\x00\x5b\ -\x00\x00\x00\x96\x00\x00\x00\x00\x00\x01\x00\x00\x05\x0b\ -\x00\x00\x01\x46\x00\x00\x00\x00\x00\x01\x00\x02\x05\xbd\ -\x00\x00\x01\x6a\x00\x00\x00\x00\x00\x01\x00\x02\x07\x1b\ -\x00\x00\x00\xde\x00\x00\x00\x00\x00\x01\x00\x01\xfe\x79\ -\x00\x00\x00\x6e\x00\x00\x00\x00\x00\x01\x00\x00\x03\xb9\ -\x00\x00\x01\x26\x00\x00\x00\x00\x00\x01\x00\x02\x01\xec\ -\x00\x00\x00\x48\x00\x00\x00\x00\x00\x01\x00\x00\x02\xd2\ +\x00\x00\x00\x00\x00\x02\x00\x00\x00\x02\x00\x00\x00\x01\ +\x00\x00\x00\x12\x00\x02\x00\x00\x00\x0b\x00\x00\x00\x04\ +\x00\x00\x00\x00\x00\x02\x00\x00\x00\x01\x00\x00\x00\x03\ +\x00\x00\x01\x42\x00\x00\x00\x00\x00\x01\x00\x00\x67\x50\ +\x00\x00\x00\x22\x00\x00\x00\x00\x00\x01\x00\x00\x00\x00\ +\x00\x00\x00\xc6\x00\x00\x00\x00\x00\x01\x00\x00\x5b\x9c\ +\x00\x00\x00\xd2\x00\x00\x00\x00\x00\x01\x00\x00\x5e\xd3\ +\x00\x00\x00\xfc\x00\x00\x00\x00\x00\x01\x00\x00\x63\x18\ +\x00\x00\x00\x2e\x00\x00\x00\x00\x00\x01\x00\x00\x50\x2f\ +\x00\x00\x00\x4c\x00\x00\x00\x00\x00\x01\x00\x00\x53\x01\ +\x00\x00\x01\x1c\x00\x00\x00\x00\x00\x01\x00\x00\x64\xe5\ +\x00\x00\x00\x70\x00\x00\x00\x00\x00\x01\x00\x00\x54\x92\ +\x00\x00\x00\xa8\x00\x00\x00\x00\x00\x01\x00\x00\x59\x4a\ +\x00\x00\x00\x82\x00\x00\x00\x00\x00\x01\x00\x00\x58\x63\ +\x00\x00\x00\xe8\x00\x00\x00\x00\x00\x01\x00\x00\x60\xb5\ " qt_resource_struct_v2 = b"\ -\x00\x00\x00\x00\x00\x02\x00\x00\x00\x01\x00\x00\x00\x01\ +\x00\x00\x00\x00\x00\x02\x00\x00\x00\x02\x00\x00\x00\x01\ \x00\x00\x00\x00\x00\x00\x00\x00\ -\x00\x00\x00\x00\x00\x02\x00\x00\x00\x01\x00\x00\x00\x02\ +\x00\x00\x00\x12\x00\x02\x00\x00\x00\x0b\x00\x00\x00\x04\ \x00\x00\x00\x00\x00\x00\x00\x00\ -\x00\x00\x00\x12\x00\x02\x00\x00\x00\x0a\x00\x00\x00\x03\ +\x00\x00\x00\x00\x00\x02\x00\x00\x00\x01\x00\x00\x00\x03\ \x00\x00\x00\x00\x00\x00\x00\x00\ -\x00\x00\x00\x24\x00\x00\x00\x00\x00\x01\x00\x00\x00\x00\ -\x00\x00\x01\x52\x22\x1e\x86\xe0\ -\x00\x00\x00\xbc\x00\x00\x00\x00\x00\x01\x00\x00\x07\x76\ -\x00\x00\x01\x5e\x7d\xff\xcb\x9c\ -\x00\x00\x01\x02\x00\x00\x00\x00\x00\x01\x00\x02\x00\x5b\ -\x00\x00\x01\x52\x22\x16\xc6\x80\ -\x00\x00\x00\x96\x00\x00\x00\x00\x00\x01\x00\x00\x05\x0b\ -\x00\x00\x01\x52\x22\x1d\xfa\x40\ -\x00\x00\x01\x46\x00\x00\x00\x00\x00\x01\x00\x02\x05\xbd\ -\x00\x00\x01\x5e\x7d\xff\xcb\x9c\ -\x00\x00\x01\x6a\x00\x00\x00\x00\x00\x01\x00\x02\x07\x1b\ -\x00\x00\x01\x5e\x7d\xff\xcb\x9c\ -\x00\x00\x00\xde\x00\x00\x00\x00\x00\x01\x00\x01\xfe\x79\ -\x00\x00\x01\x5e\x7d\xff\xcb\x9c\ -\x00\x00\x00\x6e\x00\x00\x00\x00\x00\x01\x00\x00\x03\xb9\ -\x00\x00\x01\x5e\x7d\xff\xcb\x9c\ -\x00\x00\x01\x26\x00\x00\x00\x00\x00\x01\x00\x02\x01\xec\ -\x00\x00\x01\x5e\x7d\xff\xcb\x9c\ -\x00\x00\x00\x48\x00\x00\x00\x00\x00\x01\x00\x00\x02\xd2\ -\x00\x00\x01\x52\x22\x25\x5c\xe0\ +\x00\x00\x01\x42\x00\x00\x00\x00\x00\x01\x00\x00\x67\x50\ +\x00\x00\x01\x5e\x83\x6e\x67\x9a\ +\x00\x00\x00\x22\x00\x00\x00\x00\x00\x01\x00\x00\x00\x00\ +\x00\x00\x01\x5e\x83\x6e\x67\x9a\ +\x00\x00\x00\xc6\x00\x00\x00\x00\x00\x01\x00\x00\x5b\x9c\ +\x00\x00\x01\x60\xa3\x86\xd3\x93\ +\x00\x00\x00\xd2\x00\x00\x00\x00\x00\x01\x00\x00\x5e\xd3\ +\x00\x00\x01\x5e\x83\x6e\x67\x9a\ +\x00\x00\x00\xfc\x00\x00\x00\x00\x00\x01\x00\x00\x63\x18\ +\x00\x00\x01\x60\xa3\x92\xc3\xde\ +\x00\x00\x00\x2e\x00\x00\x00\x00\x00\x01\x00\x00\x50\x2f\ +\x00\x00\x01\x5f\x70\xb4\xad\x15\ +\x00\x00\x00\x4c\x00\x00\x00\x00\x00\x01\x00\x00\x53\x01\ +\x00\x00\x01\x5f\x70\xb4\xad\x06\ +\x00\x00\x01\x1c\x00\x00\x00\x00\x00\x01\x00\x00\x64\xe5\ +\x00\x00\x01\x5f\x70\xb4\xad\x06\ +\x00\x00\x00\x70\x00\x00\x00\x00\x00\x01\x00\x00\x54\x92\ +\x00\x00\x01\x5e\x83\x6e\x67\x9a\ +\x00\x00\x00\xa8\x00\x00\x00\x00\x00\x01\x00\x00\x59\x4a\ +\x00\x00\x01\x60\xa3\x92\xd3\xfc\ +\x00\x00\x00\x82\x00\x00\x00\x00\x00\x01\x00\x00\x58\x63\ +\x00\x00\x01\x5f\x70\xb4\xad\x15\ +\x00\x00\x00\xe8\x00\x00\x00\x00\x00\x01\x00\x00\x60\xb5\ +\x00\x00\x01\x60\xa3\x87\x69\x88\ " qt_version = QtCore.qVersion().split('.') From b2089f13dc4bccbc0f30f41cacdb88273e540021 Mon Sep 17 00:00:00 2001 From: bradyzp Date: Tue, 2 Jan 2018 13:15:30 +0100 Subject: [PATCH 040/236] TST/ENH: Improvements to ImportDialog, added tests. TST - Added rudimentary testing for PropertiesDialog and AdvancedImportDialog. Verifies correctness of params output and manipulation of format combo-boxes. Further testing to be done with the EditImportDialog sub-dialog. ENH/FIX - Various re-writes/fixes/improvements to AdvancedImportDialog code. Removed threaded loading logic from dialog - decided this should be handled by the caller, not within the dialog; dialog is then responsible for generating parameters set, not performing external actions other than loading a preview sample. --- dgp/gui/dialogs.py | 508 ++++++++++++++++++++++++++---------------- tests/test_dialogs.py | 90 ++++++++ 2 files changed, 401 insertions(+), 197 deletions(-) create mode 100644 tests/test_dialogs.py diff --git a/dgp/gui/dialogs.py b/dgp/gui/dialogs.py index 50adfcb..60b320b 100644 --- a/dgp/gui/dialogs.py +++ b/dgp/gui/dialogs.py @@ -2,9 +2,12 @@ import os import io +import csv +import types import logging import datetime import pathlib +from typing import Union import PyQt5.Qt as Qt import PyQt5.QtWidgets as QtWidgets @@ -14,7 +17,8 @@ import dgp.lib.project as prj import dgp.lib.enums as enums import dgp.gui.loader as qloader -from dgp.gui.models import TableModel, TableModel2, ComboEditDelegate +from dgp.gui.loader import LoaderThread +from dgp.gui.models import TableModel, ComboEditDelegate from dgp.lib.types import DataSource from dgp.lib.etc import gen_uuid @@ -24,8 +28,8 @@ edit_view, _ = loadUiType('dgp/gui/ui/edit_import_view.ui') flight_dialog, _ = loadUiType('dgp/gui/ui/add_flight_dialog.ui') project_dialog, _ = loadUiType('dgp/gui/ui/project_dialog.ui') -info_dialog, _ = loadUiType('dgp/gui/ui/info_dialog.ui') -line_label_dialog, _ = loadUiType('dgp/gui/ui/set_line_label.ui') + +PATH_ERR = "Path cannot be empty." class BaseDialog(QtWidgets.QDialog): @@ -84,8 +88,12 @@ def color_label(self, lbl_txt, color='red'): v.setStyleSheet('color: {}'.format(color)) def show_message(self, message, buddy_label=None, log=None, hl_color='red', - msg_color='black', target=None): + color='black', target=None): """ + Displays a message in the widgets msg_target widget (any widget that + supports setText()), as definied on initialization. + Optionally also send the message to the dialog's logger at specified + level, and highlights a buddy label a specified color, or red. Parameters ---------- @@ -101,7 +109,7 @@ def show_message(self, message, buddy_label=None, log=None, hl_color='red', given logging level (int or logging module constant) hl_color : str, Optional Optional ovveride color to highlight buddy_label with, defaults red - msg_color : str, Optional + color : str, Optional Optional ovveride color to display message with target : str, Optional Send the message to the target specified here instead of any @@ -118,7 +126,7 @@ def show_message(self, message, buddy_label=None, log=None, hl_color='red', try: target.setText(message) - target.setStyleSheet('color: {clr}'.format(clr=msg_color)) + target.setStyleSheet('color: {clr}'.format(clr=color)) except AttributeError: self.log.error("Invalid target for show_message, must support " "setText attribute.") @@ -146,9 +154,7 @@ def validate_not_empty(self, terminator='*'): """ -class EditImportView(BaseDialog, edit_view): - # TODO: Provide method of saving custom changes to columns between - # re-opening of this dialog. Perhaps under custom combo-box item. +class EditImportDialog(BaseDialog, edit_view): """ Take lines of data with corresponding fields and populate custom Table Model Fields can be exchanged via a custom Selection Delegate, which provides a @@ -156,86 +162,126 @@ class EditImportView(BaseDialog, edit_view): Parameters ---------- - field_enum : + formats : An enumeration consisting of Enumerated items mapped to Field Tuples i.e. field_enum.AT1A.value == ('Gravity', 'long', 'cross', ...) + edit_header : bool parent : Parent Widget to this Dialog """ - def __init__(self, field_enum, parent=None): + def __init__(self, formats, edit_header=False, parent=None): flags = Qt.Qt.Dialog super().__init__('label_msg', parent=parent, flags=flags) self.setupUi(self) self._base_h = self.height() self._base_w = self.width() - self._fields = field_enum - self._cfs = self.cob_field_set # type: QtWidgets.QComboBox - self._data = None # Configure the QTableView self._view = self.table_col_edit # type: QtWidgets.QTableView self._view.setContextMenuPolicy(Qt.Qt.CustomContextMenu) - self._view.customContextMenuRequested.connect(self._view_context_menu) + if edit_header: + self._view.customContextMenuRequested.connect(self._context_menu) + self._view.setItemDelegate(ComboEditDelegate()) + + for item in formats: + name = str(item.name).upper() + self.cb_format.addItem(name, item) - # Configure the QComboBox for Field Set selection - for fset in field_enum: - self._cfs.addItem(str(fset.name).upper(), fset) + model = TableModel(self.format.value, editable_header=edit_header) + self._view.setModel(model) - self._cfs.currentIndexChanged.connect(lambda: self._setup_model( - self._data, self._cfs.currentData())) - self.btn_reset.clicked.connect(lambda: self._setup_model( - self._data, self._cfs.currentData())) + self.cb_format.currentIndexChanged.connect(lambda: self._set_header()) + self.btn_reset.clicked.connect(lambda: self._set_header()) def exec_(self): - if self._data is None: - raise ValueError("Data must be set before executing dialog.") + self._autofit() return super().exec_() - def set_state(self, data, current_field=None): - self._data = data - self._setup_model(data, self._cfs.currentData()) - if current_field is not None: - idx = self._cfs.findText(current_field.name, - flags=Qt.Qt.MatchExactly) - self._cfs.setCurrentIndex(idx) + def _set_header(self): + """pyQt Slot: + Set the TableModel header row values to the current data_format values + """ + self.model.table_header = self.format.value + self._autofit() + + def _autofit(self): + """Adjust dialog height/width based on table view contents""" + self._view.resizeColumnsToContents() + dl_width = self._base_w + for col in range(self.model.columnCount()): + dl_width += self._view.columnWidth(col) + + dl_height = self._base_h + for row in range(self.model.rowCount()): + dl_height += self._view.rowHeight(row) + if row >= 5: + break + self.resize(dl_width, dl_height) + + @property + def data(self): + return self.model.model_data + + @data.setter + def data(self, value): + self.model.model_data = value @property def columns(self): - return self.model.header_row() + return self.model.table_header + + @property + def cb_format(self) -> QtWidgets.QComboBox: + return self.cob_field_set @property - def field_enum(self): - return self._cfs.currentData() + def format(self): + return self.cb_format.currentData() + + @format.setter + def format(self, value): + if isinstance(value, str): + idx = self.cb_format.findText(value) + else: + idx = self.cb_format.findData(value) + if idx == -1: + self.cb_format.setCurrentIndex(0) + else: + self.cb_format.setCurrentIndex(idx) @property - def model(self) -> TableModel2: + def model(self) -> TableModel: return self._view.model() @property - def skip_row(self) -> bool: + def skiprow(self) -> Union[int, None]: """Returns value of UI's 'Has Header' CheckBox to determine if first - row should be skipped (Header already defined in data).""" - return self.chb_has_header.isChecked() + row should be skipped (Header already defined in data). + """ + if self.chb_has_header.isChecked(): + return 1 + return None - def accept(self): - super().accept() + @skiprow.setter + def skiprow(self, value: bool): + self.chb_has_header.setChecked(bool(value)) - def _view_context_menu(self, point: Qt.QPoint): + def _context_menu(self, point: Qt.QPoint): row = self._view.rowAt(point.y()) col = self._view.columnAt(point.x()) index = self.model.index(row, col) if -1 < col < self._view.model().columnCount() and row == 0: menu = QtWidgets.QMenu() - action = QtWidgets.QAction("Custom Value", parent=menu) + action = QtWidgets.QAction("Custom Value") action.triggered.connect(lambda: self._custom_label(index)) menu.addAction(action) menu.exec_(self._view.mapToGlobal(point)) def _custom_label(self, index: QtCore.QModelIndex): - # For some reason QInputDialog.getText does not recognize kwargs + # For some reason QInputDialog.getText does not recognize some kwargs cur_val = index.data(role=QtCore.Qt.DisplayRole) text, ok = QtWidgets.QInputDialog.getText(self, "Input Value", @@ -245,42 +291,13 @@ def _custom_label(self, index: QtCore.QModelIndex): self.model.setData(index, text.strip()) return - def _setup_model(self, data, field_set): - delegate = ComboEditDelegate() - - header = list(field_set.value) - # TODO: Data needs to be sanitized at some stage for \n and whitespace - while len(header) < len(data[0]): - header.append('') - dcopy = [header] - dcopy.extend(data) - model = TableModel2(dcopy) - - self._view.setModel(model) - self._view.setItemDelegate(delegate) - self._view.resizeColumnsToContents() - - # Resize dialog to fit sample dataset - width = self._base_w - for idx in range(model.columnCount()): - width += self._view.columnWidth(idx) - - # TODO: This fixed pixel value is not ideal - height = self._base_h - 75 - for idx in range(model.rowCount()): - height += self._view.rowHeight(idx) - - self._model = model - self.resize(self.width(), height) - - -class AdvancedImport(BaseDialog, advanced_import): +class AdvancedImportDialog(BaseDialog, advanced_import): """ Provides a dialog for importing Trajectory or Gravity data. This dialog computes and displays some basic file information, and provides a mechanism for previewing and adjusting column headers via - the EditImportView dialog class. + the EditImportDialog class. Parameters ---------- @@ -293,7 +310,6 @@ class AdvancedImport(BaseDialog, advanced_import): parent : QWidget Parent Widget """ - data = QtCore.pyqtSignal(prj.Flight, DataSource) def __init__(self, project, flight, dtype=enums.DataTypes.GRAVITY, parent=None): @@ -301,9 +317,8 @@ def __init__(self, project, flight, dtype=enums.DataTypes.GRAVITY, self.setupUi(self) self._preview_limit = 5 + self._params = {} self._path = None - self._flight = flight - self._custom_cols = None self._dtype = dtype icon = {enums.DataTypes.GRAVITY: ':icons/gravity', enums.DataTypes.TRAJECTORY: ':icons/gps'}[dtype] @@ -318,76 +333,105 @@ def __init__(self, project, flight, dtype=enums.DataTypes.GRAVITY, self._fields = {enums.DataTypes.GRAVITY: enums.GravityTypes, enums.DataTypes.TRAJECTORY: enums.GPSFields}[dtype] + formats = sorted(self._fields, key=lambda x: x.name) + for item in formats: + name = str(item.name).upper() + self.cb_format.addItem(name, item) + + editable = self._dtype == enums.DataTypes.TRAJECTORY + self._editor = EditImportDialog(formats=formats, + edit_header=editable, + parent=self) + for flt in project.flights: self.combo_flights.addItem(flt.name, flt) - if flt == self._flight: - self.combo_flights.setCurrentIndex(self.combo_flights.count()-1) + if not self.combo_flights.count(): + self.combo_flights.addItem("No Flights Available", None) + + for mtr in project.meters: + self.combo_meters.addItem(mtr.name, mtr) + if not self.combo_meters.count(): + self.combo_meters.addItem("No Meters Available", None) - for fmt in self._fields: - self._fmt_picker.addItem(str(fmt.name).upper(), fmt) + if flight is not None: + flt_idx = self.combo_flights.findData(flight) + self.combo_flights.setCurrentIndex(flt_idx) # Signals/Slots + self.cb_format.currentIndexChanged.connect( + lambda idx: self.editor.cb_format.setCurrentIndex(idx)) self.btn_browse.clicked.connect(self.browse) - self.btn_edit_cols.clicked.connect(self._edit_cols) + self.btn_edit_cols.clicked.connect(self._edit) - self._edit_dlg = EditImportView(self._fields, parent=self) + @property + def params(self): + return self._params - # Launch browse dialog immediately - self.browse() + @property + def editor(self) -> EditImportDialog: + return self._editor @property - def _fmt_picker(self) -> QtWidgets.QComboBox: + def cb_format(self) -> QtWidgets.QComboBox: return self.cb_data_fmt + @property + def format(self): + return self.cb_format.currentData() + + @format.setter + def format(self, value): + if isinstance(value, str): + idx = self.cb_format.findText(value) + else: + idx = self.cb_format.findData(value) + if idx == -1: + self.cb_format.setCurrentIndex(0) + else: + self.cb_format.setCurrentIndex(idx) + self.editor.format = value + @property def flight(self): - return self._flight + return self.combo_flights.currentData() @property - def path(self): + def path(self) -> pathlib.Path: return self._path - def accept(self) -> None: - if self._path is None: - self.show_message("Path cannot be empty", 'Path*') + @path.setter + def path(self, value): + if value is None: + self._path = None + self.btn_edit_cols.setEnabled(False) + self.btn_dialog.button(QtWidgets.QDialogButtonBox.Ok).setEnabled( + False) + self.line_path.setText('None') return - # Process accept and run LoadFile threader - self._flight = self.combo_flights.currentData() - progress = QtWidgets.QProgressDialog( - 'Loading {pth}'.format(pth=self._path), None, 0, 0, self.parent(), - QtCore.Qt.WindowSystemMenuHint | QtCore.Qt.WindowTitleHint | - QtCore.Qt.WindowMinimizeButtonHint) - progress.setWindowTitle("Loading") - - if self._custom_cols is not None: - cols = self._custom_cols - else: - cols = self._fmt_picker.currentData().value - - if self._edit_dlg.skip_row: - skip = 1 + self._path = pathlib.Path(value) + self.line_path.setText(str(self._path.resolve())) + if not self._path.exists(): + self.log.warning(PATH_ERR) + self.show_message(PATH_ERR, 'Path*', color='red') + self.btn_edit_cols.setEnabled(False) else: - skip = None + self._update() + self.btn_edit_cols.setEnabled(True) - ld = qloader.LoadFile(self._path, self._dtype, cols, - parent=self, skiprow=skip) - ld.data.connect(lambda ds: self.data.emit(self._flight, ds)) - ld.error.connect(lambda x: progress.close()) - ld.error.connect(self._import_error) - ld.start() + def accept(self) -> None: + if self.path is None: + self.show_message(PATH_ERR, 'Path*', color='red') + return - progress.show() - progress.setValue(1) + self._params = dict(path=self.path, + subtype=self.format, + skiprows=self.editor.skiprow, + columns=self.editor.columns) super().accept() - def _import_error(self, error: bool): - if not error: - return - self.show_error("Failed to import datafile. See log trace.") - - def _edit_cols(self): - """Launches the EditImportView dialog to allow user to preview and + def _edit(self): + """Launches the EditImportDialog to allow user to preview and edit column name/position as necesarry. Notes @@ -403,57 +447,69 @@ def _edit_cols(self): if self.path is None: return - # Generate sample set of data for Column editor - data = [] - with open(self.path, mode='r') as fd: - for i, line in enumerate(fd): - line = str(line).rstrip() - data.append(line.split(',')) - if i == self._preview_limit: - break + # self.editor.format = self.cb_format.currentData() + self.editor.data = self._sample - # Update the edit dialog with current data - self._edit_dlg.set_state(data, self._fmt_picker.currentData()) - if self._edit_dlg.exec_(): - selected_enum = self._edit_dlg.field_enum - idx = self._fmt_picker.findData(selected_enum, role=Qt.Qt.UserRole) + if self.editor.exec_(): + # Change format combobox to match change in editor + idx = self.cb_format.findData(self.editor.format) if idx != -1: - self._fmt_picker.setCurrentIndex(idx) - - self.show_message("Data Columns Updated", msg_color='Green') + self.cb_format.setCurrentIndex(idx) - def browse(self): - title = "Select {typ} Data File".format(typ=self._dtype.name) - filt = "{typ} Data {ffilt}".format(typ=self._dtype.name, - ffilt=self._file_filter) - path, _ = QtWidgets.QFileDialog.getOpenFileName( - parent=self, caption=title, directory=self._base_dir, filter=filt, - options=QtWidgets.QFileDialog.ReadOnly) - if not path: - return + self.show_message("Data Columns Updated", color='Green') + self.log.debug("Columns: {}".format(self.editor.columns)) - self.line_path.setText(str(path)) - self._path = path - st_size_mib = os.stat(path).st_size / 1048576 + def _update(self): + """Analyze path for statistical information/sample""" + st_size_mib = self.path.stat().st_size / 1048576 self.field_fsize.setText("{:.3f} MiB".format(st_size_mib)) - count = 0 - sbuf = io.StringIO() - with open(path) as fd: - data = [fd.readline() for _ in range(self._preview_limit)] - count += self._preview_limit - - last_line = None - for line in fd: + # Generate sample set of data for Column editor + sample = [] + with self.path.open(mode='r', newline='') as fd: + try: + has_header = csv.Sniffer().has_header(fd.read(8192)) + except csv.Error: + has_header = False + fd.seek(0) + + # Read in sample set + rdr = csv.reader(fd) + count = 0 + for i, line in enumerate(rdr): count += 1 - last_line = line - data.append(last_line) + if i <= self._preview_limit - 1: + sample.append(line) - col_count = len(data[0].split(',')) + self.field_line_count.setText("{}".format(count)) + if has_header: + self.show_message("Autodetected Header in File", color='green') + self.editor.skiprow = True + + if not len(sample): + col_count = 0 + else: + col_count = len(sample[0]) self.field_col_count.setText(str(col_count)) - sbuf.writelines(data) - sbuf.seek(0) + self._sample = sample + + # count = 0 + # sbuf = io.StringIO() + # with open(self.path) as fd: + # data = [fd.readline() for _ in range(self._preview_limit)] + # count += self._preview_limit + # + # last_line = None + # for line in fd: + # count += 1 + # last_line = line + # data.append(last_line) + # + # col_count = len(data[0].split(',')) + # + # sbuf.writelines(data) + # sbuf.seek(0) # Experimental - Read portion of data to get timestamps # df = None @@ -467,11 +523,21 @@ def browse(self): # pass # # df = ti.import_trajectory(sbuf, ) - self.field_line_count.setText("{}".format(count)) - self.btn_edit_cols.setEnabled(True) + def browse(self): + title = "Select {} Data File".format(self._dtype.name.capitalize()) + filt = "{typ} Data {ffilt}".format(typ=self._dtype.name.capitalize(), + ffilt=self._file_filter) + raw_path, _ = QtWidgets.QFileDialog.getOpenFileName( + parent=self, caption=title, directory=str(self._base_dir), + filter=filt, options=QtWidgets.QFileDialog.ReadOnly) + if raw_path: + self.path = raw_path + self._base_dir = self.path.parent + else: + return -class AddFlight(QtWidgets.QDialog, flight_dialog): +class AddFlightDialog(QtWidgets.QDialog, flight_dialog): def __init__(self, project, *args): super().__init__(*args) self.setupUi(self) @@ -480,24 +546,14 @@ def __init__(self, project, *args): self._grav_path = None self._gps_path = None self.combo_meter.addItems(project.meters) - # self.browse_gravity.clicked.connect(functools.partial(self.browse, - # field=self.path_gravity)) self.browse_gravity.clicked.connect(lambda: self.browse( field=self.path_gravity)) - # self.browse_gps.clicked.connect(functools.partial(self.browse, - # field=self.path_gps)) self.browse_gps.clicked.connect(lambda: self.browse( field=self.path_gps)) self.date_flight.setDate(datetime.datetime.today()) self._uid = gen_uuid('f') self.text_uuid.setText(self._uid) - self.params_model = TableModel(['Key', 'Start Value', 'End Value'], - editable=[1, 2]) - self.params_model.append('Tie Location') - self.params_model.append('Tie Reading') - self.flight_params.setModel(self.params_model) - def accept(self): qdate = self.date_flight.date() # type: QtCore.QDate date = datetime.date(qdate.year(), qdate.month(), qdate.day()) @@ -532,7 +588,7 @@ def gravity(self): return None -class CreateProject(BaseDialog, project_dialog): +class CreateProjectDialog(BaseDialog, project_dialog): def __init__(self, *args): super().__init__(msg_recvr='label_msg', *args) self.setupUi(self) @@ -594,7 +650,7 @@ def accept(self): self._project = prj.AirborneProject(path, name) else: self.show_message("Invalid Project Type (Not yet implemented)", - log=logging.WARNING, msg_color='red') + log=logging.WARNING, color='red') return super().accept() @@ -610,23 +666,81 @@ def project(self): return self._project -class InfoDialog(QtWidgets.QDialog, info_dialog): - def __init__(self, model, parent=None, **kwargs): - super().__init__(parent=parent, **kwargs) - self.setupUi(self) - self._model = model - self.setModel(self._model) - self.updates = None - - def setModel(self, model: QtCore.QAbstractTableModel): - table = self.table_info # type: QtWidgets.QTableView - table.setModel(model) - table.resizeColumnsToContents() - width = 50 - for col_idx in range(model.columnCount()): - width += table.columnWidth(col_idx) - self.resize(width, self.height()) +class PropertiesDialog(BaseDialog): + def __init__(self, cls, parent=None): + super().__init__(parent=parent) + # Store label: data as dictionary + self._data = dict() + self.setWindowTitle('Properties') + + vlayout = QtWidgets.QVBoxLayout() + try: + name = cls.__getattribute__('name') + except AttributeError: + name = '' + + self._title = QtWidgets.QLabel('

{cls}: {name}

'.format( + cls=cls.__class__.__name__, name=name)) + self._title.setAlignment(Qt.Qt.AlignHCenter) + self._form = QtWidgets.QFormLayout() + + self._btns = QtWidgets.QDialogButtonBox(QtWidgets.QDialogButtonBox.Ok) + self._btns.accepted.connect(self.accept) + + vlayout.addWidget(self._title, alignment=Qt.Qt.AlignTop) + vlayout.addLayout(self._form) + vlayout.addWidget(self._btns, alignment=Qt.Qt.AlignBottom) + + self.setLayout(vlayout) + + self.log.info("Properties Dialog Initialized") + if cls is not None: + self.populate_form(cls) + self.show() + + @property + def data(self): + return None + + @property + def form(self) -> QtWidgets.QFormLayout: + return self._form + + @staticmethod + def _is_abstract(obj): + if hasattr(obj, '__isabstractmethod__') and obj.__isabstractmethod__: + return True + return False + + def _build_widget(self, value): + if value is None: + return QtWidgets.QLabel('None') + if isinstance(value, str): + return QtWidgets.QLabel(value) + elif isinstance(value, (list, types.GeneratorType)): + rv = QtWidgets.QVBoxLayout() + for i, item in enumerate(value): + if i >= 5: + rv.addWidget(QtWidgets.QLabel("{} More Items...".format( + len(value) - 5))) + break + # rv.addWidget(QtWidgets.QLabel(str(item))) + rv.addWidget(self._build_widget(item)) + return rv + elif isinstance(value, dict): + rv = QtWidgets.QFormLayout() + for key, val in value.items(): + rv.addRow(str(key), self._build_widget(val)) + return rv + + else: + return QtWidgets.QLabel(repr(value)) + + def populate_form(self, instance): + for cls in instance.__class__.__mro__: + for binding, attr in cls.__dict__.items(): + if not self._is_abstract(attr) and isinstance(attr, property): + value = instance.__getattribute__(binding) + lbl = "

{}:

".format(str(binding).capitalize()) + self.form.addRow(lbl, self._build_widget(value)) - def accept(self): - self.updates = self._model.updates - super().accept() diff --git a/tests/test_dialogs.py b/tests/test_dialogs.py new file mode 100644 index 0000000..0b363ac --- /dev/null +++ b/tests/test_dialogs.py @@ -0,0 +1,90 @@ +# coding: utf-8 + +from .context import dgp + +import pathlib +import tempfile +import unittest + +from PyQt5.QtCore import Qt +from PyQt5.QtTest import QTest +import PyQt5.QtWidgets as QtWidgets +import PyQt5.QtTest as QtTest + +import dgp.gui.dialogs as dlg +import dgp.lib.project as prj +import dgp.lib.enums as enums + + +class TestDialogs(unittest.TestCase): + def setUp(self): + with tempfile.TemporaryDirectory() as td: + self.m_prj = prj.AirborneProject(td, 'mock_project') + self.m_flight = prj.Flight(self.m_prj, 'mock_flight') + self.m_prj.add_flight(self.m_flight) + self.m_data = [['h1', 'h2', 'h3'], + ['r1h1', 'r1h2', 'r1h3']] + self.m_grav_path = pathlib.Path('tests/sample_gravity.csv') + self.m_gps_path = pathlib.Path('tests/sample_trajectory.txt') + self.app = QtWidgets.QApplication([]) + + def test_properties_dialog(self): + t_dlg = dlg.PropertiesDialog(self.m_flight) + self.assertEqual(6, t_dlg.form.rowCount()) + spy = QtTest.QSignalSpy(t_dlg.accepted) + self.assertTrue(spy.isValid()) + QTest.mouseClick(t_dlg._btns.button(QtWidgets.QDialogButtonBox.Ok), + Qt.LeftButton) + self.assertEqual(1, len(spy)) + + def test_advanced_import_dialog_gravity(self): + t_dlg = dlg.AdvancedImportDialog(self.m_prj, self.m_flight, + enums.DataTypes.GRAVITY) + self.assertEqual(self.m_flight, t_dlg.flight) + self.assertIsNone(t_dlg.path) + + t_dlg.cb_format.setCurrentIndex(0) + editor = t_dlg.editor + + # Test format property setter, and reflection in editor format + for fmt in enums.GravityTypes: + self.assertNotEqual(-1, t_dlg.cb_format.findData(fmt)) + t_dlg.format = fmt + self.assertEqual(t_dlg.format, editor.format) + + t_dlg.path = self.m_grav_path + self.assertEqual(self.m_grav_path, t_dlg.path) + self.assertEqual(list(t_dlg.cb_format.currentData().value), + editor.columns) + + # Set formatter back to type AT1A for param testing + t_dlg.format = enums.GravityTypes.AT1A + self.assertEqual(t_dlg.format, enums.GravityTypes.AT1A) + + # Test behavior of skiprow property + # Should return None if unchecked, and 1 if checked + self.assertIsNone(editor.skiprow) + editor.skiprow = True + self.assertEqual(1, editor.skiprow) + + # Test generation of params property on dialog accept() + t_dlg.accept() + result_params = dict(path=self.m_grav_path, + columns=list(enums.GravityTypes.AT1A.value), + skiprows=1, + subtype=enums.GravityTypes.AT1A) + self.assertEqual(result_params, t_dlg.params) + self.assertEqual(self.m_flight, t_dlg.flight) + + def test_advanced_import_dialog_trajectory(self): + t_dlg = dlg.AdvancedImportDialog(self.m_prj, self.m_flight, + enums.DataTypes.TRAJECTORY) + + # Test all GPSFields represented, and setting via format property + for fmt in enums.GPSFields: + self.assertNotEqual(-1, t_dlg.cb_format.findData(fmt)) + t_dlg.format = fmt + self.assertEqual(fmt, t_dlg.format) + + + From da9dbda3b025e7a949c9a84efd243b94d28ef5c5 Mon Sep 17 00:00:00 2001 From: bradyzp Date: Tue, 2 Jan 2018 16:26:05 +0100 Subject: [PATCH 041/236] FIX/CLN: Refactored and improved ChannelListModel Cleaned/Fixed the messy logic in ChannelListModel to work more logically, and without relying on state within DataChannel objects. Added ability to add/remove DataChannels and/or DataSources from ChannelListModel via the tab widgets. Removed deprecated class from gui/models and made some minor changes to TableModel. --- dgp/gui/models.py | 194 ++++++++++++++------------------------------- dgp/gui/widgets.py | 40 +++------- dgp/lib/plotter.py | 3 - dgp/lib/types.py | 31 ++------ 4 files changed, 75 insertions(+), 193 deletions(-) diff --git a/dgp/gui/models.py b/dgp/gui/models.py index 5d1f090..5c89842 100644 --- a/dgp/gui/models.py +++ b/dgp/gui/models.py @@ -29,140 +29,77 @@ dgp.lib.types.py : Defines many of the objects used within the models """ +_log = logging.getLogger(__name__) class TableModel(QtCore.QAbstractTableModel): - """Simple table model of key: value pairs.""" - - def __init__(self, columns, editable=None, editheader=False, parent=None): - super().__init__(parent=parent) - # TODO: Allow specification of which columns are editable - # List of column headers - self._cols = columns - self._rows = [] - self._editable = editable - self._editheader = editheader - self._updates = {} - - def set_object(self, obj): - """Populates the model with key, value pairs from the passed objects' - __dict__""" - for key, value in obj.__dict__.items(): - self.append(key, value) - - def append(self, *args): - """Add a new row of data to the table, trimming input array to length of - columns.""" - if not isinstance(args, list): - args = list(args) - while len(args) < len(self._cols): - # Pad the end - args.append(None) - - self._rows.append(args[:len(self._cols)]) - return True - - def get_row(self, row: int): - try: - return self._rows[row] - except IndexError: - print("Invalid row index") - return None - - @property - def updates(self): - return self._updates - - # Required implementations of super class (for a basic, non-editable table) - - def rowCount(self, parent=None, *args, **kwargs): - return len(self._rows) - - def columnCount(self, parent=None, *args, **kwargs): - return len(self._cols) - - def data(self, index: QModelIndex, role=None): - if role == QtCore.Qt.DisplayRole or role == QtCore.Qt.EditRole: - try: - return self._rows[index.row()][index.column()] - except IndexError: - return QtCore.QVariant() - return QtCore.QVariant() - - def flags(self, index: QModelIndex): - flags = QtCore.Qt.ItemIsSelectable | QtCore.Qt.ItemIsEnabled - if index.row() == 0 and self._editheader: - flags = flags | QtCore.Qt.ItemIsEditable - # Allow the values column to be edited - elif self._editable is not None and index.column() in self._editable: - flags = flags | QtCore.Qt.ItemIsEditable - return flags - - def headerData(self, section, orientation, role=None): - if role == QtCore.Qt.DisplayRole and orientation == QtCore.Qt.Horizontal: - return QVariant(section) - # return self._cols[section] - - # Required implementations of super class for editable table - - def setData(self, index: QtCore.QModelIndex, value: QtCore.QVariant, role=None): - """Basic implementation of editable model. This doesn't propagate the - changes to the underlying object upon which the model was based - though (yet)""" - if index.isValid() and role == QtCore.Qt.ItemIsEditable: - self._rows[index.row()][index.column()] = value - self.dataChanged.emit(index, index) - return True - else: - return False - - -class TableModel2(QtCore.QAbstractTableModel): """Simple table model of key: value pairs. Parameters ---------- - data : List - 2D List of data by rows/columns, data[0] is assumed to contain the column - headers for the data. """ - def __init__(self, data, parent=None): + def __init__(self, header, editable_header=False, parent=None): super().__init__(parent=parent) - self._data = data + self._header = list(header) + self._editable = editable_header + self._data = [] self._header_index = True - def header_row(self): - return self._data[0] + @property + def table_header(self): + return self._header + + @table_header.setter + def table_header(self, value): + self._header = list(value) + self.layoutChanged.emit() + + @property + def model_data(self): + return self._data + + @model_data.setter + def model_data(self, value): + self._data = value + self.layoutChanged.emit() def value_at(self, row, col): return self._data[row][col] - def set_row(self, index, values): + def set_row(self, row, values): try: - nvals = list(values) - while len(nvals) < self.columnCount(): - nvals.append(' ') - self._data[index] = nvals + self._data[row] = values except IndexError: - print("Unable to set data at index: ", index) return False - self.dataChanged.emit(self.index(index, 0), - self.index(index, len(self._data[index]))) + self.dataChanged.emit(self.index(row, 0), + self.index(row, self.columnCount())) return True # Required implementations of super class (for a basic, non-editable table) def rowCount(self, parent=None, *args, **kwargs): - return len(self._data) + return len(self._data) + 1 def columnCount(self, parent=None, *args, **kwargs): - return len(self._data[0]) + """Assume all data has same number of columns, but header may differ. + Returns the greater of header length or data length.""" + try: + if len(self._data): + return max(len(self._data[0]), len(self._header)) + return len(self._header) + except IndexError: + return 0 def data(self, index: QModelIndex, role=None): if role == QtCore.Qt.DisplayRole or role == QtCore.Qt.EditRole: + if index.row() == 0: + try: + return self._header[index.column()] + except IndexError: + return 'None' try: - val = self._data[index.row()][index.column()] + val = self._data[index.row() - 1][index.column()] return val except IndexError: return QtCore.QVariant() @@ -170,7 +107,7 @@ def data(self, index: QModelIndex, role=None): def flags(self, index: QModelIndex): flags = QtCore.Qt.ItemIsSelectable | QtCore.Qt.ItemIsEnabled - if index.row() == 0: + if index.row() == 0 and self._editable: # Allow editing of first row (Column headers) flags = flags | QtCore.Qt.ItemIsEditable return flags @@ -188,7 +125,7 @@ def setData(self, index: QtCore.QModelIndex, value, role=QtCore.Qt.EditRole): changes to the underlying object upon which the model was based though (yet)""" if index.isValid() and role == QtCore.Qt.EditRole: - self._data[index.row()][index.column()] = value + self._header[index.column()] = value self.dataChanged.emit(index, index) return True else: @@ -477,41 +414,26 @@ def __init__(self, channels: List[DataChannel], plots: int, parent=None): self._default = ChannelListHeader() self.root.append_child(self._default) - self.channels = self._build_model(channels) + self.channels = {} + self.add_channels(*channels) - def _build_model(self, channels: list) -> Dict[str, DataChannel]: + def add_channels(self, *channels): """Build the model representation""" - rv = {} for dc in channels: # type: DataChannel - rv[dc.uid] = dc - if dc.index == -1: - self._default.append_child(dc) - continue - try: - self._plots[dc.index].append_child(dc) - except KeyError: - self.log.warning('Channel {} could not be plotted, plot does ' - 'not exist'.format(dc.uid)) - dc.plot(None) - self._default.append_child(dc) - return rv - - def clear(self): - """Remove all channels from the model""" - for dc in self.channels.values(): - dc.orphan() - self.channels = None - self.update() - - def set_channels(self, channels: list): - print("Trying to set CLM channels") - self.clear() - self.channels = self._build_model(channels) + self.channels[dc.uid] = dc + self._default.append_child(dc) self.update() - def move_channel(self, uid, index) -> bool: - """Move channel specified by uid to parent at index""" - raise NotImplementedError("Method not yet implemented or required.") + def remove_source(self, dsrc): + for channel in self.channels: # type: DataChannel + _log.debug("Orphaning and removing channel: {name}/{uid}".format( + name=channel.label, uid=channel.uid)) + if channel.source == dsrc: + channel.orphan() + try: + del self.channels[channel.uid] + except KeyError: + pass def update(self) -> None: """Update the models view layout.""" diff --git a/dgp/gui/widgets.py b/dgp/gui/widgets.py index 3402209..1e1183e 100644 --- a/dgp/gui/widgets.py +++ b/dgp/gui/widgets.py @@ -84,37 +84,24 @@ def __init__(self, flight: Flight, label: str, axes: int, **kwargs): vlayout.addWidget(self.plot) vlayout.addWidget(self.plot.get_toolbar(), alignment=Qt.AlignBottom) self.setLayout(vlayout) - self._apply_state() self._init_model() - def _apply_state(self) -> None: - """ - Apply saved state to plot based on Flight plot channels. - """ - state = self._flight.get_plot_state() - draw = False - for dc in state: - self.plot.add_series(dc, dc.plotted) - - for line in self._flight.lines: - self.plot.add_patch(line.start, line.stop, line.uid, - label=line.label) - draw = True - if draw: - self.plot.draw() - def _init_model(self): channels = self._flight.channels plot_model = models.ChannelListModel(channels, len(self.plot)) plot_model.plotOverflow.connect(self._too_many_children) plot_model.channelChanged.connect(self._on_channel_changed) - plot_model.update() + # plot_model.update() self.model = plot_model - def data_modified(self, action: str, uid: str): - self.log.info("Adding channels to model.") - channels = self._flight.channels - self.model.set_channels(channels) + # TODO: Candidate to move into base WorkspaceWidget + def data_modified(self, action: str, dsrc: types.DataSource): + if action.lower() == 'add': + self.log.info("Adding channels to model.") + self.model.add_channels(*dsrc.get_channels()) + if action.lower() == 'remove': + self.log.info("Removing channels from model.") + self.model.remove_source(dsrc) def _on_modified_line(self, info: LineUpdate): flight = self._flight @@ -142,15 +129,9 @@ def _on_modified_line(self, info: LineUpdate): stop=info.stop, label=info.label)) def _on_channel_changed(self, new: int, channel: types.DataChannel): - self.log.info("Channel change request: new index: {}".format(new)) - - self.log.debug("Moving series on plot") self.plot.remove_series(channel) if new != -1: self.plot.add_series(channel, new) - else: - pass - print("destination is -1") self.model.update() def _too_many_children(self, uid): @@ -267,8 +248,7 @@ def _on_changed_context(self, index: int): def new_data(self, dsrc: types.DataSource): for tab in [self._plot_tab, self._transform_tab, self._map_tab]: - print("Updating tabs") - tab.data_modified('add', 'test') + tab.data_modified('add', dsrc) @property def flight(self): diff --git a/dgp/lib/plotter.py b/dgp/lib/plotter.py index 32baa75..8efc0a3 100644 --- a/dgp/lib/plotter.py +++ b/dgp/lib/plotter.py @@ -949,7 +949,6 @@ def add_series(self, dc: types.DataChannel, axes_idx: int=0, draw=True): color = 'blue' series = dc.series() - dc.plot(axes_idx) line_artist = axes.plot(series.index, series.values, color=color, label=dc.label)[0] @@ -982,7 +981,6 @@ def remove_series(self, dc: types.DataChannel): """ if dc.uid not in self._lines: - _log.warning("Series UID could not be located in plot_lines") return line = self._lines[dc.uid] # type: Line2D @@ -994,7 +992,6 @@ def remove_series(self, dc: types.DataChannel): self.ax_grp.rescale_patches() del self._lines[dc.uid] del self._series[dc.uid] - dc.plot(None) if not len(self._lines): _log.warning("No Lines on any axes.") diff --git a/dgp/lib/types.py b/dgp/lib/types.py index 932b1be..79fe547 100644 --- a/dgp/lib/types.py +++ b/dgp/lib/types.py @@ -515,7 +515,7 @@ def data(self, role: QtDataRoles): return "UID: {}".format(self.uid) if role == QtDataRoles.DecorationRole: if self.dtype == enums.DataTypes.GRAVITY: - return ':icons/grav' + return ':icons/gravity' if self.dtype == enums.DataTypes.TRAJECTORY: return ':icons/gps' @@ -528,29 +528,9 @@ def __init__(self, label, source: DataSource, parent=None): super().__init__(gen_uuid('dcn'), parent=parent) self.label = label self.field = label - self._source = source + self.source = source self.plot_style = '' self.units = '' - self._plotted = False - self._index = -1 - - @property - def plotted(self): - return self._plotted - - @property - def index(self): - if not self._plotted: - return -1 - return self._index - - def plot(self, index: Union[int, None]) -> None: - if index is None: - self._plotted = False - self._index = -1 - else: - self._index = index - self._plotted = True def series(self, force=False) -> Series: """Return the pandas Series referenced by this DataChannel @@ -560,7 +540,7 @@ def series(self, force=False) -> Series: Reserved for future use, force the DataManager to reload the Series from disk. """ - return self._source.load(self.field) + return self.source.load(self.field) def data(self, role: QtDataRoles): if role == QtDataRoles.DisplayRole: @@ -568,7 +548,7 @@ def data(self, role: QtDataRoles): if role == QtDataRoles.UserRole: return self.field if role == QtDataRoles.ToolTipRole: - return self._source.filename + return self.source.filename return None def flags(self): @@ -585,3 +565,6 @@ def orphan(self): return res except ValueError: return False + except: + print("Unexpected error orphaning child") + return False From 7dd20aef6af051c794df530af0b729da63d8c6e6 Mon Sep 17 00:00:00 2001 From: bradyzp Date: Tue, 2 Jan 2018 16:30:21 +0100 Subject: [PATCH 042/236] TST/FIX: Added test for gps import dialog. Improved test function for GPS Specific import dialog. Fixed error where GPS Field list was stored as an unordered set in enums.py, causing errors where columns where mis-ordered. --- dgp/gui/dialogs.py | 18 ++++++++---------- dgp/lib/enums.py | 7 ++++--- tests/test_dialogs.py | 10 ++++++++++ 3 files changed, 22 insertions(+), 13 deletions(-) diff --git a/dgp/gui/dialogs.py b/dgp/gui/dialogs.py index 60b320b..672890e 100644 --- a/dgp/gui/dialogs.py +++ b/dgp/gui/dialogs.py @@ -317,16 +317,15 @@ def __init__(self, project, flight, dtype=enums.DataTypes.GRAVITY, self.setupUi(self) self._preview_limit = 5 - self._params = {} self._path = None self._dtype = dtype - icon = {enums.DataTypes.GRAVITY: ':icons/gravity', - enums.DataTypes.TRAJECTORY: ':icons/gps'}[dtype] - self.setWindowIcon(Qt.QIcon(icon)) - self._file_filter = "(*.csv *.dat *.txt)" self._base_dir = '.' self._sample = None + + icon = {enums.DataTypes.GRAVITY: ':icons/gravity', + enums.DataTypes.TRAJECTORY: ':icons/gps'}[dtype] + self.setWindowIcon(Qt.QIcon(icon)) self.setWindowTitle("Import {}".format(dtype.name.capitalize())) # Establish field enum based on dtype @@ -365,7 +364,10 @@ def __init__(self, project, flight, dtype=enums.DataTypes.GRAVITY, @property def params(self): - return self._params + return dict(path=self.path, + subtype=self.format, + skiprows=self.editor.skiprow, + columns=self.editor.columns) @property def editor(self) -> EditImportDialog: @@ -424,10 +426,6 @@ def accept(self) -> None: self.show_message(PATH_ERR, 'Path*', color='red') return - self._params = dict(path=self.path, - subtype=self.format, - skiprows=self.editor.skiprow, - columns=self.editor.columns) super().accept() def _edit(self): diff --git a/dgp/lib/enums.py b/dgp/lib/enums.py index 98c8dd8..9b7661b 100644 --- a/dgp/lib/enums.py +++ b/dgp/lib/enums.py @@ -65,10 +65,11 @@ class GravityTypes(enum.Enum): TAGS = ('tags', ) +# TODO: I don't like encoding the field tuples in enum - do a separate lookup? class GPSFields(enum.Enum): - sow = {'week', 'sow', 'lat', 'long', 'ell_ht'} - hms = {'mdy', 'hms', 'lat', 'long', 'ell_ht'} - serial = {'datenum', 'lat', 'long', 'ell_ht'} + sow = ('week', 'sow', 'lat', 'long', 'ell_ht') + hms = ('mdy', 'hms', 'lat', 'long', 'ell_ht') + serial = ('datenum', 'lat', 'long', 'ell_ht') class QtItemFlags(enum.IntEnum): diff --git a/tests/test_dialogs.py b/tests/test_dialogs.py index 0b363ac..4d029e7 100644 --- a/tests/test_dialogs.py +++ b/tests/test_dialogs.py @@ -85,6 +85,16 @@ def test_advanced_import_dialog_trajectory(self): self.assertNotEqual(-1, t_dlg.cb_format.findData(fmt)) t_dlg.format = fmt self.assertEqual(fmt, t_dlg.format) + col_fmt = t_dlg.params['subtype'] + self.assertEqual(fmt, col_fmt) + t_dlg.format = enums.GPSFields.hms + + # Verify expected output, ordered correctly + hms_expected = ['mdy', 'hms', 'lat', 'long', 'ell_ht'] + self.assertEqual(hms_expected, t_dlg.params['columns']) + + + From b73c299a1c69a18071de3ab9bb7ad3185fca81f0 Mon Sep 17 00:00:00 2001 From: bradyzp Date: Tue, 2 Jan 2018 22:15:31 +0100 Subject: [PATCH 043/236] CLN/FIX: Minor fixes, general code cleanup/refactoring. CLN: Removed old/deprecated code and added some documentation. Small cosmetic changes made to UI classes. Added ComboBoxes to Flight Dialog for future implementation of import functionality. Updated trajectory_ingestor docstring and adjusted line-lengths to PEP8 standard. Fixed issue in plotter where axes scales were not properly being re-limited. --- dgp/gui/dialogs.py | 14 +- dgp/gui/main.py | 61 +-- dgp/gui/models.py | 25 +- dgp/gui/splash.py | 4 +- dgp/gui/ui/add_flight_dialog.ui | 6 + dgp/lib/datamanager.py | 6 +- dgp/lib/gravity_ingestor.py | 21 +- dgp/lib/plotter.py | 1 + dgp/lib/project.py | 4 - dgp/lib/trajectory_ingestor.py | 51 +- dgp/lib/types.py | 19 +- dgp/resources_rc.py | 853 +++++++++++++++++--------------- 12 files changed, 568 insertions(+), 497 deletions(-) diff --git a/dgp/gui/dialogs.py b/dgp/gui/dialogs.py index 672890e..0fe17cc 100644 --- a/dgp/gui/dialogs.py +++ b/dgp/gui/dialogs.py @@ -141,6 +141,7 @@ def show_error(self, message): dlg.setStandardButtons(QtWidgets.QMessageBox.Ok) dlg.setText(message) dlg.setIcon(QtWidgets.QMessageBox.Critical) + dlg.setWindowTitle("Error") dlg.exec_() def validate_not_empty(self, terminator='*'): @@ -166,7 +167,11 @@ class EditImportDialog(BaseDialog, edit_view): An enumeration consisting of Enumerated items mapped to Field Tuples i.e. field_enum.AT1A.value == ('Gravity', 'long', 'cross', ...) edit_header : bool - + Allow the header row to be edited if True. + Currently there seems to be no reason to permit editing of gravity + data files as they are expected to be very uniform. However this is + useful with GPS data files where we have seen some columns switched + or missing. parent : Parent Widget to this Dialog @@ -230,7 +235,9 @@ def data(self, value): @property def columns(self): - return self.model.table_header + # TODO: This is still problematic, what happens if a None column is + # in the middle of the data set? Cols will be skewed. + return [col for col in self.model.table_header if col != 'None'] @property def cb_format(self) -> QtWidgets.QComboBox: @@ -425,6 +432,9 @@ def accept(self) -> None: if self.path is None: self.show_message(PATH_ERR, 'Path*', color='red') return + if self.flight is None: + self.show_error("Must select a valid flight to import data.") + return super().accept() diff --git a/dgp/gui/main.py b/dgp/gui/main.py index 31df15b..86cf609 100644 --- a/dgp/gui/main.py +++ b/dgp/gui/main.py @@ -8,8 +8,9 @@ import PyQt5.QtCore as QtCore import PyQt5.QtGui as QtGui -from PyQt5.QtWidgets import (QMainWindow, QTabWidget, QAction, QMenu, - QProgressDialog, QFileDialog, QTreeView) +import PyQt5.QtWidgets as QtWidgets +from PyQt5.QtWidgets import (QMainWindow, QAction, QMenu, QProgressDialog, + QFileDialog, QTreeView) from PyQt5.QtCore import pyqtSignal, pyqtBoundSignal from PyQt5.QtGui import QColor from PyQt5.uic import loadUiType @@ -146,10 +147,10 @@ def _init_slots(self): # Project Menu Actions # # self.action_import_data.triggered.connect(self.import_data_dialog) - self.action_import_grav.triggered.connect( - lambda: self.import_data_dialog('gravity')) self.action_import_gps.triggered.connect( - lambda: self.import_data_dialog('gps')) + lambda: self.import_data_dialog(enums.DataTypes.TRAJECTORY)) + self.action_import_grav.triggered.connect( + lambda: self.import_data_dialog(enums.DataTypes.GRAVITY)) self.action_add_flight.triggered.connect(self.add_flight_dialog) # Project Tree View Actions # @@ -234,7 +235,7 @@ def _tab_closed(self, index: int): self.log.warning("Tab close requested for tab: {}".format(index)) flight_id = self._tabs.widget(index).flight.uid self._tabs.removeTab(index) - del self._open_tabs[flight_id] + tab = self._open_tabs.pop(flight_id) def _tab_changed(self, index: int): self.log.info("Tab changed to index: {}".format(index)) @@ -267,6 +268,7 @@ def data_added(self, flight: prj.Flight, src: types.DataSource) -> None: ------- None """ + self.log.debug("Registering datasource to flight: {}".format(flight)) flight.register_data(src) if flight.uid not in self._open_tabs: # If flight is not opened we don't need to update the plot @@ -321,11 +323,9 @@ def save_project(self) -> None: else: self.log.info("Error saving project.") - ##### - # Project dialog functions - ##### + # Project dialog functions ################################################ - def import_data_dialog(self, dtype=None) -> bool: + def import_data_dialog(self, dtype=None): """Load data file (GPS or Gravity) using a background Thread, then hand it off to the project.""" dialog = AdvancedImport(self.project, self.current_flight, @@ -335,7 +335,7 @@ def import_data_dialog(self, dtype=None) -> bool: def new_project_dialog(self) -> QMainWindow: new_window = True - dialog = CreateProject() + dialog = CreateProjectDialog() if dialog.exec_(): self.log.info("Creating new project") project = dialog.project @@ -367,16 +367,16 @@ def open_project_dialog(self) -> None: @autosave def add_flight_dialog(self) -> None: - dialog = AddFlight(self.project) + dialog = AddFlightDialog(self.project) if dialog.exec_(): flight = dialog.flight self.log.info("Adding flight {}".format(flight.name)) self.project.add_flight(flight) - if dialog.gravity: - self.import_data(dialog.gravity, 'gravity', flight) - if dialog.gps: - self.import_data(dialog.gps, 'gps', flight) + # if dialog.gravity: + # self.import_data(dialog.gravity, 'gravity', flight) + # if dialog.gps: + # self.import_data(dialog.gps, 'gps', flight) self._launch_tab(flight=flight) return self.log.info("New flight creation aborted.") @@ -419,7 +419,7 @@ def contextMenuEvent(self, event: QtGui.QContextMenuEvent, *args, **kwargs): info_slot = functools.partial(self._info_action, context_focus) plot_slot = functools.partial(self._plot_action, context_focus) menu = QMenu() - info_action = QAction("Info") + info_action = QAction("Properties") info_action.triggered.connect(info_slot) plot_action = QAction("Plot in new window") plot_action.triggered.connect(plot_slot) @@ -440,15 +440,18 @@ def _plot_action(self, item): raise NotImplementedError def _info_action(self, item): - if not (isinstance(item, prj.Flight) - or isinstance(item, prj.GravityProject)): - return - for name, attr in item.__class__.__dict__.items(): - if isinstance(attr, property): - print("Have property bound to {}".format(name)) - print("Value is: {}".format(item.__getattribute__(name))) - - model = TableModel(['Key', 'Value']) - model.set_object(item) - dialog = InfoDialog(model, parent=self) - dialog.exec_() + # if not (isinstance(item, prj.Flight) + # or isinstance(item, prj.GravityProject)): + # return + # for name, attr in item.__class__.__dict__.items(): + # + # if isinstance(attr, property): + # print("Have property bound to {}".format(name)) + # print("Value is: {}".format(item.__getattribute__(name))) + dlg = PropertiesDialog(item, parent=self) + dlg.exec_() + + # model = TableModel(['Key', 'Value']) + # model.set_object(item) + # dialog = InfoDialog(model, parent=self) + # dialog.exec_() diff --git a/dgp/gui/models.py b/dgp/gui/models.py index 5c89842..7824270 100644 --- a/dgp/gui/models.py +++ b/dgp/gui/models.py @@ -62,6 +62,8 @@ def model_data(self): @model_data.setter def model_data(self, value): self._data = value + while len(self._header) < len(self._data[0]): + self._header.append('None') self.layoutChanged.emit() def value_at(self, row, col): @@ -118,7 +120,7 @@ def headerData(self, section, orientation, role=None): return section return QtCore.QVariant() - # Required implementations of super class for editable table + # Required implementations of super class for editable table ############# def setData(self, index: QtCore.QModelIndex, value, role=QtCore.Qt.EditRole): """Basic implementation of editable model. This doesn't propagate the @@ -126,7 +128,8 @@ def setData(self, index: QtCore.QModelIndex, value, role=QtCore.Qt.EditRole): though (yet)""" if index.isValid() and role == QtCore.Qt.EditRole: self._header[index.column()] = value - self.dataChanged.emit(index, index) + idx = self.index(0, index.column()) + self.dataChanged.emit(idx, idx) return True else: return False @@ -365,11 +368,13 @@ def setEditorData(self, editor: QWidget, index: QModelIndex) -> None: else: editor.setCurrentIndex(index) - def setModelData(self, editor: QWidget, model: QAbstractItemModel, + def setModelData(self, editor: QComboBox, model: QAbstractItemModel, index: QModelIndex) -> None: - combobox = editor # type: QComboBox - value = str(combobox.currentText()) - model.setData(index, value, QtCore.Qt.EditRole) + value = str(editor.currentText()) + try: + model.setData(index, value, QtCore.Qt.EditRole) + except: + _log.exception("Exception setting model data") def updateEditorGeometry(self, editor: QWidget, option: Qt.QStyleOptionViewItem, @@ -546,10 +551,14 @@ def dropMimeData(self, data: QMimeData, action, row, col, dc.orphan() self.endRemoveRows() + if row == -1: + n_row = 0 + else: + n_row = row # Add channel to new parent/header - n_row = destination.child_count() self.beginInsertRows(parent, n_row, n_row) - destination.append_child(dc) + # destination.append_child(dc) + destination.insert_child(dc, n_row) self.endInsertRows() self.channelChanged.emit(destination.index, dc) diff --git a/dgp/gui/splash.py b/dgp/gui/splash.py index cc6afc2..23fa947 100644 --- a/dgp/gui/splash.py +++ b/dgp/gui/splash.py @@ -13,7 +13,7 @@ from dgp.gui.main import MainWindow from dgp.gui.utils import ConsoleHandler, LOG_FORMAT, LOG_COLOR_MAP, get_project_file -from dgp.gui.dialogs import CreateProject +from dgp.gui.dialogs import CreateProjectDialog import dgp.lib.project as prj splash_screen, _ = loadUiType('dgp/gui/ui/splash_screen.ui') @@ -116,7 +116,7 @@ def set_selection(self, item: QtWidgets.QListWidgetItem, accept=False): def new_project(self): """Allow the user to create a new project""" - dialog = CreateProject() + dialog = CreateProjectDialog() if dialog.exec_(): project = dialog.project # type: prj.AirborneProject project.save() diff --git a/dgp/gui/ui/add_flight_dialog.ui b/dgp/gui/ui/add_flight_dialog.ui index 22d0dab..6d2abe7 100644 --- a/dgp/gui/ui/add_flight_dialog.ui +++ b/dgp/gui/ui/add_flight_dialog.ui @@ -127,6 +127,9 @@ + + + @@ -188,6 +191,9 @@ + + + diff --git a/dgp/lib/datamanager.py b/dgp/lib/datamanager.py index 41df95a..5bb4d21 100644 --- a/dgp/lib/datamanager.py +++ b/dgp/lib/datamanager.py @@ -210,7 +210,11 @@ def _save_hdf5(self, data, uid=None): uid = gen_uuid('data_') with HDFStore(str(hdf_path)) as hdf, self._registry as reg: print("Writing to hdfstore: ", hdf_path) - hdf.put(uid, data, format='fixed', data_columns=True) + try: + hdf.put(uid, data, format='fixed', data_columns=True) + except: + self.log.exception("Exception writing file to HDF5 store.") + return None reg['datamap'].update({uid: HDF5}) return uid diff --git a/dgp/lib/gravity_ingestor.py b/dgp/lib/gravity_ingestor.py index 8443cda..5fc5629 100644 --- a/dgp/lib/gravity_ingestor.py +++ b/dgp/lib/gravity_ingestor.py @@ -69,7 +69,7 @@ def _unpack_bits(n): return df -def read_at1a(path, fields=None, fill_with_nans=True, interp=False, +def read_at1a(path, columns=None, fill_with_nans=True, interp=False, skiprows=None): """ Read and parse gravity data file from DGS AT1A (Airborne) meter. @@ -82,7 +82,7 @@ def read_at1a(path, fields=None, fill_with_nans=True, interp=False, ---------- path : str Filesystem path to gravity data file - fields: List + columns: List Optional List of fields to specify when importing the data, otherwise defaults are assumed. This can be used if the data file has fields in an abnormal order @@ -97,19 +97,20 @@ def read_at1a(path, fields=None, fill_with_nans=True, interp=False, pandas.DataFrame Gravity data indexed by datetime. """ - if fields is None: - fields = ['gravity', 'long', 'cross', 'beam', 'temp', 'status', 'pressure', 'Etemp', 'GPSweek', - 'GPSweekseconds'] + if columns is None: + columns = ['gravity', 'long', 'cross', 'beam', 'temp', 'status', + 'pressure', 'Etemp', 'GPSweek', 'GPSweekseconds'] df = pd.read_csv(path, header=None, engine='c', na_filter=False, skiprows=skiprows) - df.columns = fields + df.columns = columns # expand status field - status_field_names = ['clamp', 'unclamp', 'gps_sync', 'feedback', 'reserved1', - 'reserved2', 'ad_lock', 'cmd_rcvd', 'nav_mode_1', 'nav_mode_2', - 'plat_comm', 'sens_comm', 'gps_input', 'ad_sat', - 'long_sat', 'cross_sat', 'on_line'] + status_field_names = ['clamp', 'unclamp', 'gps_sync', 'feedback', + 'reserved1', 'reserved2', 'ad_lock', 'cmd_rcvd', + 'nav_mode_1', 'nav_mode_2', 'plat_comm', 'sens_comm', + 'gps_input', 'ad_sat', 'long_sat', 'cross_sat', + 'on_line'] status = _extract_bits(df['status'], columns=status_field_names, as_bool=True) diff --git a/dgp/lib/plotter.py b/dgp/lib/plotter.py index 8efc0a3..c926e72 100644 --- a/dgp/lib/plotter.py +++ b/dgp/lib/plotter.py @@ -988,6 +988,7 @@ def remove_series(self, dc: types.DataChannel): axes.lines.remove(line) axes.tick_params('y', colors='black') axes.set_ylabel('') + axes.relim() self.ax_grp.rescale_patches() del self._lines[dc.uid] diff --git a/dgp/lib/project.py b/dgp/lib/project.py index a0e02d5..be8bd28 100644 --- a/dgp/lib/project.py +++ b/dgp/lib/project.py @@ -347,10 +347,6 @@ def channels(self) -> list: rv.extend(source.get_channels()) return rv - def get_plot_state(self): - # Return List[DataChannel if DataChannel is plotted] - return [dc for dc in self.channels if dc.plotted] - def register_data(self, datasrc: types.DataSource): """Register a data file for use by this Flight""" _log.info("Flight {} registering data source: {} UID: {}".format( diff --git a/dgp/lib/trajectory_ingestor.py b/dgp/lib/trajectory_ingestor.py index 6b1436f..ad66a41 100644 --- a/dgp/lib/trajectory_ingestor.py +++ b/dgp/lib/trajectory_ingestor.py @@ -5,61 +5,69 @@ Library for trajectory data import functions """ - -import csv import numpy as np import pandas as pd -import functools -import datetime from .time_utils import leap_seconds, convert_gps_time, datenum_to_datetime from .etc import interp_nans -def import_trajectory(filepath, delim_whitespace=False, interval=0, interp=False, is_utc=False, - columns=None, skiprows=None, timeformat='sow'): - """ - import_trajectory +def import_trajectory(filepath, delim_whitespace=False, interval=0, + interp=False, is_utc=False, columns=None, skiprows=None, + timeformat='sow'): + """ Read and parse ASCII trajectory data in a comma-delimited format. - :param path: str + Parameters + ---------- + filepath : str or File-like object. Filesystem path to trajectory data file - :param interval: float, default 0 + delim_whitespace : bool + interval : float, Optional Output data rate. Default behavior is to infer the rate. - :param interp: list of ints or list of strs, default None + interp : Union[List[str], List[int]], Optional Gaps in data will be filled with interpolated values. List of column indices (list of ints) or list of column names (list of strs) to interpolate. Default behavior is not to interpolate. - :param is_utc: boolean, default False + is_utc : bool, Optional Indicates that the timestamps are UTC. The index datetimes will be shifted to remove the GPS-UTC leap second offset. - :param colums: list of strs, default: None + columns : List[str] Strings to use as the column names. - :param skiprows: list-like or integer or callable, default None + If none supplied (default), columns will be determined based on + timeformat + skiprows : Union[None, Iterable, int, Callable], Optional Line numbers to skip (0-indexed) or number of lines to skip (int) at the start of the file. If callable, the callable function will be evaluated against the row indices, returning True if the row should be skipped and False otherwise. An example of a valid callable argument would be lambda x: x in [0, 2]. - :param timeformat: 'sow' | 'hms' | 'serial', default: 'hms' + timeformat : str + 'sow' | 'hms' | 'serial' Default: 'hms' Indicates the time format to expect. The 'sow' format requires a field named 'week' with the GPS week, and a field named 'sow' with the GPS seconds of week. The 'hms' format requires a field named 'mdy' with the date in the format 'MM/DD/YYYY', and a field named 'hms' with the time in the format 'HH:MM:SS.SSS'. The 'serial' format (not yet implemented) requires a field named 'datenum' with the serial date number. - :return: DataFrame + + Returns + ------- + DataFrame + Pandas DataFrame of ingested Trajectory data. + """ - df = pd.read_csv(filepath, delim_whitespace=delim_whitespace, header=None, engine='c', na_filter=False, skiprows=skiprows) + df = pd.read_csv(filepath, delim_whitespace=delim_whitespace, header=None, + engine='c', na_filter=False, skiprows=skiprows) # assumed position of these required fields if columns is None: - if timeformat == 'sow': + if timeformat.lower() == 'sow': columns = ['week', 'sow', 'lat', 'long', 'ell_ht'] - elif timeformat == 'hms': + elif timeformat.lower() == 'hms': columns = ['mdy', 'hms', 'lat', 'long', 'ell_ht'] - elif timeformat == 'serial': + elif timeformat.lower() == 'serial': columns = ['datenum', 'lat', 'long', 'ell_ht'] else: raise ValueError('timeformat value {fmt!r} not recognized' @@ -88,7 +96,8 @@ def import_trajectory(filepath, delim_whitespace=False, interval=0, interp=False df.index = convert_gps_time(df['week'], df['sow'], format='datetime') df.drop(['sow', 'week'], axis=1, inplace=True) elif timeformat == 'hms': - df.index = pd.to_datetime(df['mdy'].str.strip() + df['hms'].str.strip(), format="%m/%d/%Y%H:%M:%S.%f") + df.index = pd.to_datetime(df['mdy'].str.strip() + df['hms'].str.strip(), + format="%m/%d/%Y%H:%M:%S.%f") df.drop(['mdy', 'hms'], axis=1, inplace=True) elif timeformat == 'serial': raise NotImplementedError diff --git a/dgp/lib/types.py b/dgp/lib/types.py index 79fe547..5540c2d 100644 --- a/dgp/lib/types.py +++ b/dgp/lib/types.py @@ -1,6 +1,6 @@ # coding: utf-8 -import json +import logging from abc import ABCMeta, abstractmethod from collections import namedtuple from typing import Union, Generator, List, Iterable @@ -25,6 +25,7 @@ agnostic, meaning they can be safely pickled, and there is no dependence on any Qt modules. """ +_log = logging.getLogger(__name__) Location = namedtuple('Location', ['lat', 'long', 'alt']) @@ -132,10 +133,6 @@ def parent(self) -> Union[AbstractTreeItem, None]: def parent(self, value: AbstractTreeItem): """Sets the parent of this object.""" if value is None: - # try: - # self._parent.remove_child(self) - # except ValueError: - # print("Couldn't reove self from parent") self._parent = None return assert isinstance(value, AbstractTreeItem) @@ -207,8 +204,11 @@ def insert_child(self, child: AbstractTreeItem, index: int) -> bool: if index == -1: self.append_child(child) return True - print("Inserting ATI child at index: ", index) - self._children.insert(index, child) + try: + self._children.insert(index, child) + child.parent = self + except IndexError: + return False self.update() return True @@ -226,7 +226,7 @@ def indexof(self, child) -> int: try: return self._children.index(child) except ValueError: - print("Invalid child passed to indexof") + _log.exception("Invalid child passed to indexof.") return -1 def row(self) -> Union[int, None]: @@ -467,7 +467,6 @@ def active(self): def active(self, value: bool): """Iterate through siblings and deactivate any other sibling of same dtype if setting this sibling to active.""" - print("Trying to set self to active") if value: for child in self.parent.children: # type: DataSource if child is self: @@ -566,5 +565,5 @@ def orphan(self): except ValueError: return False except: - print("Unexpected error orphaning child") + _log.exception("Unexpected error while orphaning child.") return False diff --git a/dgp/resources_rc.py b/dgp/resources_rc.py index d5859d1..243b100 100644 --- a/dgp/resources_rc.py +++ b/dgp/resources_rc.py @@ -9,6 +9,352 @@ from PyQt5 import QtCore qt_resource_data = b"\ +\x00\x00\x01\x8d\ +\x89\ +\x50\x4e\x47\x0d\x0a\x1a\x0a\x00\x00\x00\x0d\x49\x48\x44\x52\x00\ +\x00\x00\x20\x00\x00\x00\x20\x08\x06\x00\x00\x00\x73\x7a\x7a\xf4\ +\x00\x00\x00\x09\x70\x48\x59\x73\x00\x00\x0e\xc4\x00\x00\x0e\xc4\ 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-\x89\x8d\xc5\x0c\x53\xa8\x97\xdc\x5a\x4d\x61\x70\xd5\x13\x99\xbe\ -\x94\xd8\x48\x8c\xe7\x70\x01\x9b\xb3\xde\xa0\x20\xea\x52\xeb\x6c\ -\x5a\x6c\x30\xc6\x0b\xc2\xba\x58\x05\x89\x43\x8b\x58\xc2\x67\x9c\ -\x28\xcf\xa5\x85\xad\xc9\xc5\x5a\x62\xa3\x52\xdf\xba\x2a\xd2\x62\ -\x1f\x63\x7c\xb4\x0a\x91\x36\x87\x16\xb1\x46\x8c\x47\xcb\x75\x69\ -\xa1\xb1\x56\xe2\x88\x72\xa7\x87\xf6\xd0\x22\x95\x6e\xb1\x79\xa1\ -\xe3\x57\xc5\x6c\xfa\xa6\xbd\xf3\xcf\x94\xe7\xf1\x0f\xeb\xd6\x7d\ -\x5a\x35\x9f\x71\x49\x58\x06\x33\xa9\x09\xa7\xe8\xb2\xc5\x6e\xad\ -\x27\x95\x30\x51\xb2\xd4\x6f\x1d\x6c\x14\x09\x4d\xfa\xee\x7f\x6b\ -\xad\x84\xf3\x25\x49\x2d\xda\xa0\x6f\xad\xc5\xe3\x12\xc4\xc6\xba\ -\x95\x22\xac\xf4\x0b\x05\x4a\x75\xf5\x09\xdb\xd9\x8b\xef\x05\x48\ -\x3d\xd3\xf9\xef\x89\x4c\xce\x09\x47\xac\xbc\xa4\x5e\x0b\xa7\xfc\ -\x5c\x38\x9b\x93\xdc\x0b\xab\x3f\x5a\x72\xe3\x8c\xec\x73\xc0\x34\ -\x8e\x08\x1b\x81\x07\x19\x79\x66\x75\x31\x02\x37\x75\x29\xb7\x4d\ -\x18\x49\xfb\xe2\xf5\x5b\xdc\x17\x36\x00\x69\xf6\xe0\xb2\x70\x56\ -\x5c\xc2\x23\x3c\xc1\xaf\x4e\x2b\xfa\x0b\x48\x68\x5b\x1c\x63\x79\ -\x36\xb6\x00\x00\x00\x00\x49\x45\x4e\x44\xae\x42\x60\x82\ \x00\x00\x01\xc9\ \x89\ \x50\x4e\x47\x0d\x0a\x1a\x0a\x00\x00\x00\x0d\x49\x48\x44\x52\x00\ @@ -1644,47 +1710,6 @@ \x0d\xac\x11\x02\x10\x9d\xd7\xf3\x9a\x3d\xb4\x26\xb5\x6b\x74\x1d\ \x52\xbf\x96\x3f\x3e\xce\x37\xdf\x3b\x90\x39\x92\x00\x00\x00\x00\ \x49\x45\x4e\x44\xae\x42\x60\x82\ -\x00\x00\x02\x67\ -\x89\ -\x50\x4e\x47\x0d\x0a\x1a\x0a\x00\x00\x00\x0d\x49\x48\x44\x52\x00\ -\x00\x00\x20\x00\x00\x00\x20\x08\x06\x00\x00\x00\x73\x7a\x7a\xf4\ -\x00\x00\x00\x09\x70\x48\x59\x73\x00\x00\x0e\xc4\x00\x00\x0e\xc4\ -\x01\x95\x2b\x0e\x1b\x00\x00\x02\x19\x49\x44\x41\x54\x78\x5e\xdd\ -\x97\x31\x6b\x22\x41\x1c\xc5\xdf\xae\x5e\xa3\xcd\x55\xda\x1a\x7b\ -\xc1\xd6\x2e\x85\xa5\xb0\xd9\x5c\x21\xd8\x24\x16\x96\x82\x29\xfd\ -\x04\xb6\x82\xa5\x60\xee\x1a\x9b\x9c\x49\x04\x4b\x8b\x74\x16\x09\ -\xe4\x1b\x88\xb5\x55\x1a\x85\x5c\xce\x4d\x7c\xb0\x7f\x58\x6e\xbc\ -\x5d\x77\x77\x24\x92\x1f\x2c\xb2\x28\x3b\x6f\xde\xbc\x79\xb3\x1a\ -\x70\x59\xaf\xd7\xef\x50\x41\x2a\x95\x32\x70\x40\x4c\x7c\x32\x8a\ -\x03\x95\x4a\x05\x64\x32\x99\x40\xf8\xd2\x0e\x24\xa1\x02\x71\xe2\ -\x80\xd0\xe1\x23\x77\xe0\x76\x74\x87\x43\x70\xfe\xc3\x3e\xae\x0c\ -\x98\x7b\x28\xe6\xa5\xed\xfe\xf8\x77\x41\x3a\x9d\x46\xa9\x54\x42\ -\xf2\x5b\x02\x06\x0c\x74\x3a\x1d\xac\x56\x2b\x98\x09\x13\xce\xc6\ -\x09\xca\x06\xbf\x8f\x27\x60\x30\x18\x50\x04\x84\x42\xa1\xe0\x91\ -\x9b\xc0\xdf\xb7\x0d\x1c\xc7\xd1\x9a\x01\xb6\xe0\x77\xaf\x03\xa4\ -\xdf\xef\xb3\x0b\x78\xa1\x5a\xad\xa2\xdb\xed\x62\xb9\x5c\xd2\x19\ -\xfc\x1e\xdd\x04\x65\x26\x74\x08\x15\xdf\x1a\x8d\x06\xca\xe5\x32\ -\x08\x97\x60\x3a\x9d\xa2\xd9\x6c\x62\x3e\x9f\xa3\x56\xab\xc1\x34\ -\xf5\xc4\xc7\xd8\xce\xfe\x12\xc0\x35\xfe\x03\x67\xce\xc1\xbd\x0e\ -\xf5\x7a\x3d\x64\x32\x19\xfc\x79\x7d\x8b\xd2\x03\x4a\x13\x5a\xf0\ -\xa1\xd5\x6a\x89\x13\xe2\x06\x86\xc3\x21\x08\x83\xa9\x23\x03\x67\ -\xb2\xe6\xfb\x32\x9b\xcd\x40\x9e\x9e\x1e\x65\xcd\x23\xf7\x81\x29\ -\xb3\x1a\x8f\xc7\xb4\x3b\x68\x09\xc4\x05\x09\xac\xd6\x1e\xe0\x40\ -\x62\xbb\x3a\xb8\x0a\xb7\xa8\xac\x25\x77\x8b\xda\xf5\xea\x3d\x7f\ -\xaf\x08\xe0\x4c\x78\x49\xda\x15\x41\x3b\xca\x4a\x6b\x13\x3e\x00\ -\x38\x65\xfb\xc9\x80\xfc\xf4\x23\x9b\xcd\xee\x3c\xdf\xc3\xc0\x77\ -\x4d\xc9\xc0\x2f\x00\xdc\xdb\x7b\xcf\x8c\x5d\xc0\x6c\xe8\xc0\x70\ -\x9b\xf0\x19\x40\x91\x0f\x6e\xb7\xdb\x12\xb2\x20\x58\x54\x92\x97\ -\x17\x00\x57\xdb\x59\xfd\x8c\x7a\x1c\xdb\x7c\x48\x3e\x9f\x67\xc9\ -\xf0\xc1\xe2\x86\xa4\x1d\xfc\x4e\xf0\x64\x44\x9c\x60\x95\x5f\xb3\ -\xd4\xe2\xbc\x15\xe7\xdc\x4a\x2e\x06\xb4\xa2\x9f\x13\xa4\x4e\x27\ -\x42\x0b\x10\xdc\x59\x5c\x30\x98\x31\x44\xd8\x5b\x11\xf7\x21\x04\ -\x04\x23\x67\x86\x9f\x08\xcb\xb2\x78\x88\xf1\x66\xb1\x15\x70\xa2\ -\xf5\x7f\x81\x6b\x6b\x5d\x39\x1f\x3c\xb0\x4d\x5d\x72\xa1\x42\xa8\ -\x53\x44\xa4\x5d\x10\x47\x04\x6d\x27\xd2\x25\x2e\x8b\xc8\x21\x0c\ -\x9f\x09\x15\x09\xa1\x7e\x07\x54\x27\xec\x7f\x66\xbb\x08\x33\x38\ -\xf9\x00\x42\x2a\xf8\x75\xcc\x94\x1e\x79\x00\x00\x00\x00\x49\x45\ -\x4e\x44\xae\x42\x60\x82\ \x00\x01\xf6\xff\ \x89\ \x50\x4e\x47\x0d\x0a\x1a\x0a\x00\x00\x00\x0d\x49\x48\x44\x52\x00\ @@ -9746,50 +9771,55 @@ \x00\x6f\xa6\x53\ \x00\x69\ \x00\x63\x00\x6f\x00\x6e\x00\x73\ -\x00\x03\ -\x00\x00\x6a\xe3\ -\x00\x64\ -\x00\x67\x00\x73\ -\x00\x0c\ -\x02\xc1\xfc\xc7\ -\x00\x6e\ -\x00\x65\x00\x77\x00\x5f\x00\x66\x00\x69\x00\x6c\x00\x65\x00\x2e\x00\x70\x00\x6e\x00\x67\ \x00\x0f\ \x04\x18\x96\x07\ \x00\x66\ \x00\x6f\x00\x6c\x00\x64\x00\x65\x00\x72\x00\x5f\x00\x6f\x00\x70\x00\x65\x00\x6e\x00\x2e\x00\x70\x00\x6e\x00\x67\ -\x00\x06\ -\x07\x38\x90\x45\ -\x00\x6d\ -\x00\x61\x00\x72\x00\x69\x00\x6e\x00\x65\ +\x00\x08\ +\x00\x89\x64\x45\ +\x00\x61\ +\x00\x69\x00\x72\x00\x62\x00\x6f\x00\x72\x00\x6e\x00\x65\ \x00\x10\ \x0d\x76\x18\x67\ \x00\x73\ 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-\x00\x68\x00\x65\x00\x76\x00\x72\x00\x6f\x00\x6e\x00\x2d\x00\x72\x00\x69\x00\x67\x00\x68\x00\x74\ \x00\x10\ \x05\xe2\x69\x67\ \x00\x6d\ \x00\x65\x00\x74\x00\x65\x00\x72\x00\x5f\x00\x63\x00\x6f\x00\x6e\x00\x66\x00\x69\x00\x67\x00\x2e\x00\x70\x00\x6e\x00\x67\ +\x00\x03\ +\x00\x00\x6a\xe3\ +\x00\x64\ +\x00\x67\x00\x73\ +\x00\x0c\ +\x0b\x2e\x2d\xfe\ +\x00\x63\ +\x00\x68\x00\x65\x00\x76\x00\x72\x00\x6f\x00\x6e\x00\x2d\x00\x64\x00\x6f\x00\x77\x00\x6e\ +\x00\x0d\ +\x02\x91\x4e\x94\ +\x00\x63\ +\x00\x68\x00\x65\x00\x76\x00\x72\x00\x6f\x00\x6e\x00\x2d\x00\x72\x00\x69\x00\x67\x00\x68\x00\x74\ \x00\x05\ \x00\x6d\xc5\xf4\ \x00\x67\ @@ -9798,53 +9828,56 @@ qt_resource_struct_v1 = b"\ \x00\x00\x00\x00\x00\x02\x00\x00\x00\x02\x00\x00\x00\x01\ -\x00\x00\x00\x12\x00\x02\x00\x00\x00\x0b\x00\x00\x00\x04\ +\x00\x00\x00\x12\x00\x02\x00\x00\x00\x0c\x00\x00\x00\x04\ \x00\x00\x00\x00\x00\x02\x00\x00\x00\x01\x00\x00\x00\x03\ -\x00\x00\x01\x42\x00\x00\x00\x00\x00\x01\x00\x00\x67\x50\ +\x00\x00\x01\x76\x00\x00\x00\x00\x00\x01\x00\x00\x68\xb8\ +\x00\x00\x01\x2c\x00\x00\x00\x00\x00\x01\x00\x00\x14\x6a\ +\x00\x00\x00\xd4\x00\x00\x00\x00\x00\x01\x00\x00\x08\x94\ +\x00\x00\x00\x46\x00\x00\x00\x00\x00\x01\x00\x00\x01\x91\ +\x00\x00\x01\x56\x00\x00\x00\x00\x00\x01\x00\x00\x66\xeb\ +\x00\x00\x00\xb6\x00\x00\x00\x00\x00\x01\x00\x00\x05\xc2\ \x00\x00\x00\x22\x00\x00\x00\x00\x00\x01\x00\x00\x00\x00\ -\x00\x00\x00\xc6\x00\x00\x00\x00\x00\x01\x00\x00\x5b\x9c\ -\x00\x00\x00\xd2\x00\x00\x00\x00\x00\x01\x00\x00\x5e\xd3\ -\x00\x00\x00\xfc\x00\x00\x00\x00\x00\x01\x00\x00\x63\x18\ -\x00\x00\x00\x2e\x00\x00\x00\x00\x00\x01\x00\x00\x50\x2f\ -\x00\x00\x00\x4c\x00\x00\x00\x00\x00\x01\x00\x00\x53\x01\ -\x00\x00\x01\x1c\x00\x00\x00\x00\x00\x01\x00\x00\x64\xe5\ -\x00\x00\x00\x70\x00\x00\x00\x00\x00\x01\x00\x00\x54\x92\ -\x00\x00\x00\xa8\x00\x00\x00\x00\x00\x01\x00\x00\x59\x4a\ -\x00\x00\x00\x82\x00\x00\x00\x00\x00\x01\x00\x00\x58\x63\ -\x00\x00\x00\xe8\x00\x00\x00\x00\x00\x01\x00\x00\x60\xb5\ +\x00\x00\x01\x06\x00\x00\x00\x00\x00\x01\x00\x00\x11\xff\ +\x00\x00\x00\xe0\x00\x00\x00\x00\x00\x01\x00\x00\x0b\xcb\ +\x00\x00\x01\x38\x00\x00\x00\x00\x00\x01\x00\x00\x64\x99\ +\x00\x00\x00\x5c\x00\x00\x00\x00\x00\x01\x00\x00\x03\x73\ +\x00\x00\x00\xf2\x00\x00\x00\x00\x00\x01\x00\x00\x0f\x9c\ +\x00\x00\x00\x82\x00\x00\x00\x00\x00\x01\x00\x00\x04\x5a\ " qt_resource_struct_v2 = b"\ \x00\x00\x00\x00\x00\x02\x00\x00\x00\x02\x00\x00\x00\x01\ \x00\x00\x00\x00\x00\x00\x00\x00\ -\x00\x00\x00\x12\x00\x02\x00\x00\x00\x0b\x00\x00\x00\x04\ +\x00\x00\x00\x12\x00\x02\x00\x00\x00\x0c\x00\x00\x00\x04\ \x00\x00\x00\x00\x00\x00\x00\x00\ \x00\x00\x00\x00\x00\x02\x00\x00\x00\x01\x00\x00\x00\x03\ \x00\x00\x00\x00\x00\x00\x00\x00\ -\x00\x00\x01\x42\x00\x00\x00\x00\x00\x01\x00\x00\x67\x50\ +\x00\x00\x01\x76\x00\x00\x00\x00\x00\x01\x00\x00\x68\xb8\ \x00\x00\x01\x5e\x83\x6e\x67\x9a\ -\x00\x00\x00\x22\x00\x00\x00\x00\x00\x01\x00\x00\x00\x00\ +\x00\x00\x01\x2c\x00\x00\x00\x00\x00\x01\x00\x00\x14\x6a\ \x00\x00\x01\x5e\x83\x6e\x67\x9a\ -\x00\x00\x00\xc6\x00\x00\x00\x00\x00\x01\x00\x00\x5b\x9c\ +\x00\x00\x00\xd4\x00\x00\x00\x00\x00\x01\x00\x00\x08\x94\ \x00\x00\x01\x60\xa3\x86\xd3\x93\ -\x00\x00\x00\xd2\x00\x00\x00\x00\x00\x01\x00\x00\x5e\xd3\ +\x00\x00\x00\x46\x00\x00\x00\x00\x00\x01\x00\x00\x01\x91\ \x00\x00\x01\x5e\x83\x6e\x67\x9a\ -\x00\x00\x00\xfc\x00\x00\x00\x00\x00\x01\x00\x00\x63\x18\ +\x00\x00\x01\x56\x00\x00\x00\x00\x00\x01\x00\x00\x66\xeb\ \x00\x00\x01\x60\xa3\x92\xc3\xde\ -\x00\x00\x00\x2e\x00\x00\x00\x00\x00\x01\x00\x00\x50\x2f\ +\x00\x00\x00\xb6\x00\x00\x00\x00\x00\x01\x00\x00\x05\xc2\ \x00\x00\x01\x5f\x70\xb4\xad\x15\ -\x00\x00\x00\x4c\x00\x00\x00\x00\x00\x01\x00\x00\x53\x01\ +\x00\x00\x00\x22\x00\x00\x00\x00\x00\x01\x00\x00\x00\x00\ \x00\x00\x01\x5f\x70\xb4\xad\x06\ -\x00\x00\x01\x1c\x00\x00\x00\x00\x00\x01\x00\x00\x64\xe5\ +\x00\x00\x01\x06\x00\x00\x00\x00\x00\x01\x00\x00\x11\xff\ \x00\x00\x01\x5f\x70\xb4\xad\x06\ -\x00\x00\x00\x70\x00\x00\x00\x00\x00\x01\x00\x00\x54\x92\ +\x00\x00\x00\xe0\x00\x00\x00\x00\x00\x01\x00\x00\x0b\xcb\ \x00\x00\x01\x5e\x83\x6e\x67\x9a\ -\x00\x00\x00\xa8\x00\x00\x00\x00\x00\x01\x00\x00\x59\x4a\ +\x00\x00\x01\x38\x00\x00\x00\x00\x00\x01\x00\x00\x64\x99\ \x00\x00\x01\x60\xa3\x92\xd3\xfc\ -\x00\x00\x00\x82\x00\x00\x00\x00\x00\x01\x00\x00\x58\x63\ +\x00\x00\x00\x5c\x00\x00\x00\x00\x00\x01\x00\x00\x03\x73\ \x00\x00\x01\x5f\x70\xb4\xad\x15\ -\x00\x00\x00\xe8\x00\x00\x00\x00\x00\x01\x00\x00\x60\xb5\ +\x00\x00\x00\xf2\x00\x00\x00\x00\x00\x01\x00\x00\x0f\x9c\ \x00\x00\x01\x60\xa3\x87\x69\x88\ +\x00\x00\x00\x82\x00\x00\x00\x00\x00\x01\x00\x00\x04\x5a\ +\x00\x00\x01\x5b\xd3\x8f\x2f\x20\ " qt_version = QtCore.qVersion().split('.') From 01e26e198f82347318089160de0167ab14e44e78 Mon Sep 17 00:00:00 2001 From: bradyzp Date: Thu, 4 Jan 2018 20:38:20 +0100 Subject: [PATCH 044/236] CLN: Fix imports and general code cleanup. Squash this with other CLN commits. Minor code cleanup in various files, switched some imports to relative imports and removed unused imports elsewhere. --- dgp/__main__.py | 1 - dgp/gui/dialogs.py | 4 --- dgp/gui/loader.py | 11 +++--- dgp/gui/main.py | 21 +++++++++--- dgp/lib/gravity_ingestor.py | 7 ++-- dgp/lib/project.py | 68 ++++++++++++++++++++----------------- dgp/lib/types.py | 21 +++++++++--- tests/test_eotvos.py | 5 +-- 8 files changed, 81 insertions(+), 57 deletions(-) diff --git a/dgp/__main__.py b/dgp/__main__.py index 70bebf1..01b8e7f 100644 --- a/dgp/__main__.py +++ b/dgp/__main__.py @@ -5,7 +5,6 @@ sys.path.append(os.path.dirname(__file__)) -# from dgp import resources_rc from dgp import resources_rc from PyQt5.QtWidgets import QApplication from dgp.gui.splash import SplashScreen diff --git a/dgp/gui/dialogs.py b/dgp/gui/dialogs.py index 0fe17cc..3daf925 100644 --- a/dgp/gui/dialogs.py +++ b/dgp/gui/dialogs.py @@ -16,10 +16,7 @@ import dgp.lib.project as prj import dgp.lib.enums as enums -import dgp.gui.loader as qloader -from dgp.gui.loader import LoaderThread from dgp.gui.models import TableModel, ComboEditDelegate -from dgp.lib.types import DataSource from dgp.lib.etc import gen_uuid @@ -751,4 +748,3 @@ def populate_form(self, instance): value = instance.__getattribute__(binding) lbl = "

{}:

".format(str(binding).capitalize()) self.form.addRow(lbl, self._build_widget(value)) - diff --git a/dgp/gui/loader.py b/dgp/gui/loader.py index a0367b6..8bfc5d9 100644 --- a/dgp/gui/loader.py +++ b/dgp/gui/loader.py @@ -1,16 +1,17 @@ # coding: utf-8 +import sys import pathlib import logging -from typing import List +import inspect from PyQt5.QtCore import pyqtSignal, QThread, pyqtBoundSignal +from pandas import DataFrame import dgp.lib.types as types -import dgp.lib.datamanager as dm -from dgp.lib.enums import DataTypes -from dgp.lib.gravity_ingestor import read_at1a -from dgp.lib.trajectory_ingestor import import_trajectory +import dgp.lib.gravity_ingestor as gi +import dgp.lib.trajectory_ingestor as ti +from dgp.lib.enums import DataTypes, GravityTypes _log = logging.getLogger(__name__) diff --git a/dgp/gui/main.py b/dgp/gui/main.py index 86cf609..7c2e64a 100644 --- a/dgp/gui/main.py +++ b/dgp/gui/main.py @@ -18,12 +18,13 @@ import dgp.lib.project as prj import dgp.lib.types as types import dgp.lib.enums as enums -from dgp.gui.loader import LoadFile +import dgp.gui.loader as loader +import dgp.lib.datamanager as dm from dgp.gui.utils import (ConsoleHandler, LOG_FORMAT, LOG_LEVEL_MAP, get_project_file) -from dgp.gui.dialogs import (AddFlight, CreateProject, InfoDialog, - AdvancedImport) -from dgp.gui.models import TableModel, ProjectModel +from dgp.gui.dialogs import (AddFlightDialog, CreateProjectDialog, + AdvancedImportDialog, PropertiesDialog) +from dgp.gui.models import ProjectModel from dgp.gui.widgets import FlightTab, TabWorkspace @@ -64,7 +65,10 @@ def __init__(self, project: Union[prj.GravityProject, # Setup logging handler to log to GUI panel console_handler = ConsoleHandler(self.write_console) console_handler.setFormatter(LOG_FORMAT) + sb_handler = ConsoleHandler(self.show_status) + sb_handler.setFormatter(logging.Formatter("%(message)s")) self.log.addHandler(console_handler) + self.log.addHandler(sb_handler) self.log.setLevel(logging.DEBUG) # Setup Project @@ -92,6 +96,7 @@ def __init__(self, project: Union[prj.GravityProject, # self.import_base_path = pathlib.Path('../tests').resolve() self.import_base_path = pathlib.Path('~').expanduser().joinpath( 'Desktop') + self._default_status_timeout = 5000 # Status Msg timeout in milli-sec # Issue #50 Flight Tabs self._tabs = self.tab_workspace # type: TabWorkspace @@ -196,6 +201,12 @@ def write_console(self, text, level): self.text_console.verticalScrollBar().setValue( self.text_console.verticalScrollBar().maximum()) + def show_status(self, text, level): + """Displays a message in the MainWindow's status bar for specific + log level events.""" + if level.lower() == 'error' or level.lower() == 'info': + self.statusBar().showMessage(text, self._default_status_timeout) + def _launch_tab(self, index: QtCore.QModelIndex=None, flight=None) -> None: """ PyQtSlot: Called to launch a flight from the Project Tree View. @@ -437,7 +448,7 @@ def contextMenuEvent(self, event: QtGui.QContextMenuEvent, *args, **kwargs): event.accept() def _plot_action(self, item): - raise NotImplementedError + return def _info_action(self, item): # if not (isinstance(item, prj.Flight) diff --git a/dgp/lib/gravity_ingestor.py b/dgp/lib/gravity_ingestor.py index 5fc5629..a371c71 100644 --- a/dgp/lib/gravity_ingestor.py +++ b/dgp/lib/gravity_ingestor.py @@ -31,7 +31,7 @@ def _extract_bits(bitfield, columns=None, as_bool=False): Parameters ---------- - bitfields : numpy.array or pandas.Series + bitfield : numpy.array or pandas.Series 16, 32, or 64-bit integers columns : list, optional If a list is given, then the column names are given to the resulting @@ -97,9 +97,8 @@ def read_at1a(path, columns=None, fill_with_nans=True, interp=False, pandas.DataFrame Gravity data indexed by datetime. """ - if columns is None: - columns = ['gravity', 'long', 'cross', 'beam', 'temp', 'status', - 'pressure', 'Etemp', 'GPSweek', 'GPSweekseconds'] + columns = columns or ['gravity', 'long', 'cross', 'beam', 'temp', 'status', + 'pressure', 'Etemp', 'GPSweek', 'GPSweekseconds'] df = pd.read_csv(path, header=None, engine='c', na_filter=False, skiprows=skiprows) diff --git a/dgp/lib/project.py b/dgp/lib/project.py index be8bd28..5ddcd34 100644 --- a/dgp/lib/project.py +++ b/dgp/lib/project.py @@ -4,16 +4,15 @@ import pathlib import logging from datetime import datetime +from itertools import count from pandas import DataFrame from dgp.gui.qtenum import QtItemFlags, QtDataRoles -from dgp.lib.meterconfig import MeterConfig, AT1Meter -from dgp.lib.etc import gen_uuid -import dgp.lib.enums as enums -import dgp.lib.types as types -import dgp.lib.datamanager as dm - +from .meterconfig import MeterConfig, AT1Meter +from .etc import gen_uuid +from .types import DataSource, FlightLine, TreeItem +from . import datamanager as dm """ Dynamic Gravity Processor (DGP) :: project.py License: Apache License V2 @@ -55,6 +54,7 @@ """ _log = logging.getLogger(__name__) +DATA_DIR = 'data' def can_pickle(attribute): @@ -69,15 +69,15 @@ def can_pickle(attribute): return True -class GravityProject(types.TreeItem): +class GravityProject(TreeItem): """ GravityProject will be the base class defining common values for both airborne and marine gravity survey projects. """ version = 0.2 # Used for future pickling compatibility - def __init__(self, path: pathlib.Path, name: str="Untitled Project", - description: str=None, model_parent=None): + def __init__(self, path: pathlib.Path, name: str, description: str=None, + model_parent=None): """ Initializes a new GravityProject project class @@ -92,10 +92,8 @@ def __init__(self, path: pathlib.Path, name: str="Untitled Project", """ super().__init__(gen_uuid('prj'), parent=None) self._model_parent = model_parent - if isinstance(path, pathlib.Path): - self.projectdir = path # type: pathlib.Path - else: - self.projectdir = pathlib.Path(path) + self.projectdir = pathlib.Path(path) + if not self.projectdir.exists(): raise FileNotFoundError @@ -103,9 +101,9 @@ def __init__(self, path: pathlib.Path, name: str="Untitled Project", raise NotADirectoryError self.name = name - self.description = description + self.description = description or '' - dm.init(self.projectdir.joinpath('data')) + dm.init(self.projectdir.joinpath(DATA_DIR)) # Store MeterConfig objects in dictionary keyed by the meter name self._sensors = {} @@ -115,7 +113,7 @@ def __init__(self, path: pathlib.Path, name: str="Untitled Project", def data(self, role: QtDataRoles): if role == QtDataRoles.DisplayRole: return self.name - return None + return super().data(role) @property def model(self): @@ -256,7 +254,7 @@ def __setstate__(self, state) -> None: dm.init(self.projectdir.joinpath('data')) -class Flight(types.TreeItem): +class Flight(TreeItem): """ Define a Flight class used to record and associate data with an entire survey flight (takeoff -> landing) @@ -318,12 +316,13 @@ def __init__(self, project: GravityProject, name: str, # Issue #36 Plotting data channels self._default_plot_map = {'gravity': 0, 'long': 1, 'cross': 1} - self._lines_uid = self.append_child(Container(ctype=types.FlightLine, + self._lines_uid = self.append_child(Container(ctype=FlightLine, parent=self, name='Flight Lines')) - self._data_uid = self.append_child(Container(ctype=types.DataSource, + self._data_uid = self.append_child(Container(ctype=DataSource, parent=self, name='Data Files')) + self._line_sequence = count() def data(self, role): if role == QtDataRoles.ToolTipRole: @@ -334,20 +333,21 @@ def data(self, role): @property def lines(self): - return self.get_child(self._lines_uid) - # return self._lines + for line in sorted(self.get_child(self._lines_uid), + key=lambda x: x.start): + yield line @property def channels(self) -> list: """Return data channels as list of DataChannel objects""" rv = [] - for source in self.get_child(self._data_uid): # type: types.DataSource + for source in self.get_child(self._data_uid): # type: DataSource # TODO: Work on active sources later # if source is None or not source.active: rv.extend(source.get_channels()) return rv - def register_data(self, datasrc: types.DataSource): + def register_data(self, datasrc: DataSource): """Register a data file for use by this Flight""" _log.info("Flight {} registering data source: {} UID: {}".format( self.name, datasrc.filename, datasrc.uid)) @@ -358,15 +358,21 @@ def register_data(self, datasrc: types.DataSource): # datasrc.active = True # self.update() - def add_line(self, start: datetime, stop: datetime, uid=None): + def add_line(self, line: FlightLine) -> int: """Add a flight line to the flight by start/stop index and sequence - number""" - _log.debug("Adding line to Flight: {}".format(self.name)) + number. + + Returns + ------- + Sequence number of added line. + """ lines = self.get_child(self._lines_uid) - line = types.FlightLine(start, stop, len(lines) + 1, None, - uid=uid, parent=lines) + line.sequence = next(self._line_sequence) lines.append_child(line) - return line + return line.sequence + + def get_line(self, uid): + return self.get_child(self._lines_uid).get_child(uid) def remove_line(self, uid): """ Remove a flight line """ @@ -410,9 +416,9 @@ def __setstate__(self, state): self._gpsdata = None -class Container(types.TreeItem): +class Container(TreeItem): # Arbitrary list of permitted types - ctypes = {Flight, MeterConfig, types.FlightLine, types.DataSource} + ctypes = {Flight, MeterConfig, FlightLine, DataSource} def __init__(self, ctype, parent=None, **kwargs): """ diff --git a/dgp/lib/types.py b/dgp/lib/types.py index 5540c2d..3ab904d 100644 --- a/dgp/lib/types.py +++ b/dgp/lib/types.py @@ -9,8 +9,10 @@ from dgp.lib.etc import gen_uuid from dgp.gui.qtenum import QtItemFlags, QtDataRoles -import dgp.lib.datamanager as dm -import dgp.lib.enums as enums +from .datamanager import get_manager +# import dgp.lib.datamanager as dm +from . import enums +# import dgp.lib.enums as enums """ Dynamic Gravity Processor (DGP) :: lib/types.py @@ -112,7 +114,7 @@ class BaseTreeItem(AbstractTreeItem): AbstractTreeItem to ease futher specialization in subclasses. """ def __init__(self, uid, parent: AbstractTreeItem=None): - self._uid = uid + self._uid = uid or gen_uuid('bti') self._parent = parent self._children = [] # self._child_map = {} # Used for fast lookup by UID @@ -359,7 +361,8 @@ class FlightLine(TreeItem): and stop index, as well as the reference to the data it relates to. This TreeItem does not accept children. """ - def __init__(self, start, stop, sequence, file_ref, uid=None, parent=None): + def __init__(self, start, stop, sequence=None, file_ref=None, uid=None, + parent=None): super().__init__(uid, parent) self._start = start @@ -395,6 +398,14 @@ def stop(self, value): self._stop = value self.update() + @property + def sequence(self) -> int: + return self._sequence + + @sequence.setter + def sequence(self, value: int): + self._sequence = value + def data(self, role): if role == QtDataRoles.DisplayRole: if self.label: @@ -501,7 +512,7 @@ def get_channels(self) -> List['DataChannel']: def load(self, field=None) -> Union[Series, DataFrame]: """Load data from the DataManager and return the specified field.""" - data = dm.get_manager().load_data(self.uid) + data = get_manager().load_data(self.uid) if field is not None: return data[field] return data diff --git a/tests/test_eotvos.py b/tests/test_eotvos.py index ddcf834..5d75e9c 100644 --- a/tests/test_eotvos.py +++ b/tests/test_eotvos.py @@ -5,9 +5,10 @@ import numpy as np import csv -from .context import dgp +from .context import dgp from tests import sample_dir -import dgp.lib.eotvos as eotvos +from dgp.lib import eotvos +# import dgp.lib.eotvos as eotvos import dgp.lib.trajectory_ingestor as ti From 56ee6cfbc3a78c5556c6c73d46036fd160ff524c Mon Sep 17 00:00:00 2001 From: bradyzp Date: Fri, 5 Jan 2018 12:13:57 +0100 Subject: [PATCH 045/236] FIX/ENH: Rewrite loader class, added tests. Rewrote loader class to simplify and separate functionality. Added tests for laoder module. Changed progress bar functionality in main, and implement new loader interface. Fixed project tests due to some api changes in project. --- dgp/gui/loader.py | 160 +++++++++++++++++++++++++++--------------- dgp/gui/main.py | 145 ++++++++++++++++++++++++-------------- dgp/gui/widgets.py | 12 +++- tests/test_loader.py | 83 ++++++++++++++++++++++ tests/test_project.py | 65 ++++++++++------- 5 files changed, 326 insertions(+), 139 deletions(-) create mode 100644 tests/test_loader.py diff --git a/dgp/gui/loader.py b/dgp/gui/loader.py index 8bfc5d9..582bc8b 100644 --- a/dgp/gui/loader.py +++ b/dgp/gui/loader.py @@ -16,64 +16,110 @@ _log = logging.getLogger(__name__) -class LoadFile(QThread): - """ - LoadFile is a threaded interface used to load and ingest a raw source - data file, i.e. gravity or trajectory data. - Upon import the data is exported to an HDF5 store for further use by the - application. - """ - error = pyqtSignal(bool) - data = pyqtSignal(types.DataSource) # type: pyqtBoundSignal - - def __init__(self, path: pathlib.Path, dtype: DataTypes, fields: List=None, - parent=None, **kwargs): - super().__init__(parent) - self._path = pathlib.Path(path) +def _not_implemented(*args, **kwargs): + """Temporary method, raises NotImplementedError for ingestor methods that + have not yet been defined.""" + raise NotImplementedError() + + +# TODO: Work needs to be done on ZLS as the data format is completely different +# ZLS data is stored in a directory with the filenames delimiting hours +GRAVITY_INGESTORS = { + GravityTypes.AT1A: gi.read_at1a, + GravityTypes.AT1M: _not_implemented, + GravityTypes.TAGS: _not_implemented, + GravityTypes.ZLS: _not_implemented +} + + +# TODO: I think this class should handle Loading only, and emit a DataFrame +# We're doing too many things here by having the loader thread also write the +# reuslt out. Use another method to generated the DataSource +class LoaderThread(QThread): + result = pyqtSignal(DataFrame) # type: pyqtBoundSignal + error = pyqtSignal(tuple) # type: pyqtBoundSignal + + def __init__(self, method, path, dtype=None, parent=None, **kwargs): + super().__init__(parent=parent) + self.log = logging.getLogger(__name__) + self._method = method self._dtype = dtype - self._fields = fields - self._skiprow = kwargs.get('skiprow', None) - print("Loader has skiprow: ", self._skiprow) + self._kwargs = kwargs + self.path = pathlib.Path(path) def run(self): - """Executed on thread.start(), performs long running data load action""" - if self._dtype == DataTypes.TRAJECTORY: - try: - df = self._load_gps() - except (ValueError, Exception): - _log.exception("Exception loading Trajectory data") - self.error.emit(True) - return - elif self._dtype == DataTypes.GRAVITY: - try: - df = self._load_gravity() - except (ValueError, Exception): - _log.exception("Exception loading Gravity data") - self.error.emit(True) - return + """Called on thread.start() + Exceptions must be caught within run, as they fall outside the + context of the start() method, and thus cannot be handled properly + outside of the thread execution context.""" + try: + df = self._method(self.path, **self._kwargs) + except Exception as e: + # self.error.emit((True, e)) + _log.exception("Error loading datafile: {} of type: {}".format( + self.path, self._dtype.name)) + self.error.emit((True, e)) else: - _log.warning("Invalid datatype set for LoadFile run()") - self.error.emit(True) - return - # Export data to HDF5, get UID reference to pass along - uid = dm.get_manager().save_data(dm.HDF5, df) - cols = [col for col in df.keys()] - dsrc = types.DataSource(uid, self._path.name, cols, self._dtype) - self.data.emit(dsrc) - self.error.emit(False) - - def _load_gps(self): - if self._fields is not None: - fields = self._fields - else: - fields = ['mdy', 'hms', 'latitude', 'longitude', 'ortho_ht', - 'ell_ht', 'num_sats', 'pdop'] - return import_trajectory(self._path, - columns=fields, - skiprows=self._skiprow, - timeformat='hms') - - def _load_gravity(self): - """Load gravity data using AT1A format""" - return read_at1a(self._path, fields=self._fields, - skiprows=self._skiprow) + self.result.emit(df) + self.error.emit((False, None)) + + @classmethod + def from_gravity(cls, parent, path, subtype=GravityTypes.AT1A, **kwargs): + """ + Convenience method to generate a gravity LoaderThread with appropriate + method based on gravity subtype. + + Parameters + ---------- + parent + path : pathlib.Path + subtype + kwargs + + Returns + ------- + + """ + # Inspect the subtype method and cull invalid parameters + method = GRAVITY_INGESTORS[subtype] + sig = inspect.signature(method) + kwds = {k: v for k, v in kwargs.items() if k in sig.parameters} + + if subtype == GravityTypes.ZLS: + # ZLS will inspect entire directory and parse file names + path = path.parent + + return cls(method=method, path=path, parent=parent, + dtype=DataTypes.GRAVITY, **kwds) + + @classmethod + def from_gps(cls, parent, path, subtype, **kwargs): + """ + + Parameters + ---------- + parent + path + subtype + kwargs + + Returns + ------- + + """ + return cls(method=ti.import_trajectory, path=path, parent=parent, + timeformat=subtype.name.lower(), dtype=DataTypes.TRAJECTORY, + **kwargs) + + +def get_loader(parent, path, dtype, subtype, on_complete, on_error, **kwargs): + if dtype == DataTypes.GRAVITY: + ld = LoaderThread.from_gravity(parent, path, subtype, **kwargs) + else: + ld = LoaderThread.from_gps(parent, path, subtype, **kwargs) + + if on_complete is not None and callable(on_complete): + ld.result.connect(on_complete) + if on_error is not None and callable(on_error): + ld.error.connect(on_error) + return ld diff --git a/dgp/gui/main.py b/dgp/gui/main.py index 7c2e64a..b0dd411 100644 --- a/dgp/gui/main.py +++ b/dgp/gui/main.py @@ -262,66 +262,92 @@ def _update_context_tree(self, model): self._context_tree.setModel(model) self._context_tree.expandAll() - @autosave - def data_added(self, flight: prj.Flight, src: types.DataSource) -> None: - """ - Register a new data file with a flight and updates the Flight UI - components if the flight is open in a tab. + def show_progress_dialog(self, title, start=0, stop=1, label=None, + cancel="Cancel", modal=False, + flags=None) -> QProgressDialog: + """Generate a progress bar to show progress on long running event.""" + if flags is None: + flags = (QtCore.Qt.WindowSystemMenuHint | + QtCore.Qt.WindowTitleHint | + QtCore.Qt.WindowMinimizeButtonHint) + + dialog = QProgressDialog(label, cancel, start, stop, self, flags) + dialog.setWindowTitle(title) + dialog.setModal(modal) + dialog.setMinimumDuration(0) + # dialog.setCancelButton(None) + dialog.setValue(1) + dialog.show() + return dialog - Parameters - ---------- - flight : prj.Flight - Flight object with related Gravity and GPS properties to plot - src : types.DataSource - DataSource object containing pointer and metadata to a DataFrame + def show_progress_status(self, start, stop, label=None) -> QtWidgets.QProgressBar: + """Show a progress bar in the windows Status Bar""" + label = label or 'Loading' + sb = self.statusBar() # type: QtWidgets.QStatusBar + progress = QtWidgets.QProgressBar(self) + progress.setRange(start, stop) + progress.setAttribute(QtCore.Qt.WA_DeleteOnClose) + progress.setToolTip(label) + sb.addWidget(progress) + return progress - Returns - ------- - None - """ - self.log.debug("Registering datasource to flight: {}".format(flight)) - flight.register_data(src) + @autosave + def add_data(self, data, dtype, flight, path): + uid = dm.get_manager().save_data(dm.HDF5, data) + if uid is None: + self.log.error("Error occured writing DataFrame to HDF5 store.") + return + + cols = list(data.keys()) + ds = types.DataSource(uid, path, cols, dtype) + flight.register_data(ds) if flight.uid not in self._open_tabs: # If flight is not opened we don't need to update the plot return else: tab = self._open_tabs[flight.uid] # type: FlightTab - tab.new_data(src) # tell the tab that new data is available + tab.new_data(ds) # tell the tab that new data is available return - def progress_dialog(self, title, start=0, stop=1): - """Generate a progress bar to show progress on long running event.""" - dialog = QProgressDialog(title, "Cancel", start, stop, self) - dialog.setWindowTitle("Loading...") - dialog.setModal(True) - dialog.setMinimumDuration(0) - dialog.setCancelButton(None) - dialog.setValue(0) - return dialog + def load_file(self, dtype, flight, **params): + """Loads a file in the background by using a QThread + Calls :py:class: dgp.ui.loader.LoaderThread to create threaded file + loader. - def import_data(self, path: pathlib.Path, dtype: enums.DataTypes, - flight: prj.Flight, fields=None): - """ - Load data of dtype from path, using a threaded loader class - Upon load the data file should be registered with the specified flight. - """ - assert path is not None - self.log.info("Importing <{dtype}> from: Path({path}) into" - " ".format(dtype=dtype, path=str(path), - name=flight.name)) + Parameters + ---------- + dtype : enums.DataTypes + + flight : prj.Flight - loader = LoadFile(path, dtype, fields=fields, parent=self) + params : dict - progress = self.progress_dialog("Loading", 0, 0) - loader.data.connect(lambda ds: self.data_added(flight, ds)) - loader.progress.connect(progress.setValue) - loader.error.connect(lambda x: progress.close()) - loader.error.connect(lambda x: self.save_project()) - # loader.loaded.connect(self.save_project) - # loader.loaded.connect(progress.close) + """ + self.log.debug("Loading {dtype} into {flt}, with params: {param}" + .format(dtype=dtype.name, flt=flight, param=params)) + + prog = self.show_progress_status(0, 0) + prog.setValue(1) + + def _complete(data): + self.add_data(data, dtype, flight, params.get('path', None)) + + def _error(result): + err, exc = result + prog.close() + if err: + msg = "Error loading {typ}::{fname}".format( + typ=dtype.name.capitalize(), fname=params.get('path', '')) + self.log.error(msg) + else: + msg = "Loaded {typ}::{fname}".format( + typ=dtype.name.capitalize(), fname=params.get('path', '')) + self.log.info(msg) - loader.start() + ld = loader.get_loader(parent=self, dtype=dtype, on_complete=_complete, + on_error=_error, **params) + ld.start() def save_project(self) -> None: if self.project is None: @@ -336,13 +362,26 @@ def save_project(self) -> None: # Project dialog functions ################################################ - def import_data_dialog(self, dtype=None): - """Load data file (GPS or Gravity) using a background Thread, then hand - it off to the project.""" - dialog = AdvancedImport(self.project, self.current_flight, - dtype=dtype, parent=self) - dialog.data.connect(lambda flt, ds: self.data_added(flt, ds)) - return dialog.exec_() + def import_data_dialog(self, dtype=None) -> None: + """ + Launch a dialog window for user to specify path and parameters to + load a file of dtype. + Params gathered by dialog will be passed to :py:meth: self.load_file + which constrcuts the loading thread and performs the import. + + Parameters + ---------- + dtype : enums.DataTypes + Data type for which to launch dialog: GRAVITY or TRAJECTORY + + """ + dialog = AdvancedImportDialog(self.project, self.current_flight, + dtype=dtype, parent=self) + dialog.browse() + if dialog.exec_(): + # TODO: Should path be contained within params or should we take + # it as its own parameter + self.load_file(dtype, dialog.flight, **dialog.params) def new_project_dialog(self) -> QMainWindow: new_window = True diff --git a/dgp/gui/widgets.py b/dgp/gui/widgets.py index 1e1183e..5d1b2c4 100644 --- a/dgp/gui/widgets.py +++ b/dgp/gui/widgets.py @@ -78,6 +78,8 @@ def __init__(self, flight: Flight, label: str, axes: int, **kwargs): vlayout = QVBoxLayout() self.plot = LineGrabPlot(flight, axes) + for line in flight.lines: + self.plot.add_patch(line.start, line.stop, line.uid, line.label) self.plot.line_changed.connect(self._on_modified_line) self._flight = flight @@ -107,7 +109,7 @@ def _on_modified_line(self, info: LineUpdate): flight = self._flight if info.uid in [x.uid for x in flight.lines]: if info.action == 'modify': - line = flight.lines.get_child(info.uid) + line = flight.get_line(info.uid) line.start = info.start line.stop = info.stop line.label = info.label @@ -122,7 +124,8 @@ def _on_modified_line(self, info: LineUpdate): .format(start=info.start, stop=info.stop, label=info.label)) else: - flight.add_line(info.start, info.stop, uid=info.uid) + line = types.FlightLine(info.start, info.stop, uid=info.uid) + flight.add_line(line) self.log.debug("Added line to flight {flt}: start={start}, " "stop={stop}, label={label}" .format(flt=flight.name, start=info.start, @@ -131,7 +134,10 @@ def _on_modified_line(self, info: LineUpdate): def _on_channel_changed(self, new: int, channel: types.DataChannel): self.plot.remove_series(channel) if new != -1: - self.plot.add_series(channel, new) + try: + self.plot.add_series(channel, new) + except: + self.log.exception("Error adding series to plot") self.model.update() def _too_many_children(self, uid): diff --git a/tests/test_loader.py b/tests/test_loader.py new file mode 100644 index 0000000..6fcd291 --- /dev/null +++ b/tests/test_loader.py @@ -0,0 +1,83 @@ +# coding: utf-8 + +from .context import dgp + +import logging +import unittest +from pathlib import Path + +import PyQt5.QtWidgets as QtWidgets +import PyQt5.QtTest as QtTest +from pandas import DataFrame + +import dgp.gui.loader as loader +import dgp.lib.enums as enums +import dgp.lib.gravity_ingestor as gi +import dgp.lib.trajectory_ingestor as ti +import dgp.lib.types as types + + +class TestLoader(unittest.TestCase): + """Test the Threaded file loader class in dgp.gui.loader""" + + def setUp(self): + self.app = QtWidgets.QApplication([]) + self.grav_path = Path('tests/sample_gravity.csv') + self.gps_path = Path('tests/sample_trajectory.txt') + self._result = {} + # Disable logging output expected from thread testing (cannot be caught) + logging.disable(logging.CRITICAL) + + def tearDown(self): + logging.disable(logging.NOTSET) + + def sig_emitted(self, key, value): + self._result[key] = value + + def test_load_gravity(self): + grav_df = gi.read_at1a(str(self.grav_path)) + self.assertEqual((9, 26), grav_df.shape) + + ld = loader.LoaderThread( + loader.GRAVITY_INGESTORS[loader.GravityTypes.AT1A], self.grav_path, + loader.DataTypes.GRAVITY) + ld.error.connect(lambda x: self.sig_emitted('err', x)) + ld.result.connect(lambda x: self.sig_emitted('data', x)) + ld.start() + ld.wait() + + # Process signal events + self.app.processEvents() + + self.assertFalse(self._result['err'][0]) + self.assertIsInstance(self._result['data'], DataFrame) + + self.assertTrue(grav_df.equals(self._result['data'])) + + # Test Error Handling (pass GPS data to cause a ValueError) + ld_err = loader.LoaderThread.from_gravity(None, self.gps_path) + ld_err.error.connect(lambda x: self.sig_emitted('err2', x)) + ld_err.start() + ld_err.wait() + self.app.processEvents() + + err, exc = self._result['err2'] + self.assertTrue(err) + self.assertIsInstance(exc, ValueError) + + def test_load_trajectory(self): + cols = ['mdy', 'hms', 'lat', 'long', 'ell_ht', 'ortho_ht', 'num_sats', + 'pdop'] + gps_df = ti.import_trajectory(self.gps_path, columns=cols, + skiprows=1, timeformat='hms') + + ld = loader.LoaderThread.from_gps(None, self.gps_path, + enums.GPSFields.hms, columns=cols, + skiprows=1) + ld.error.connect(lambda x: self.sig_emitted('gps_err', x)) + ld.result.connect(lambda x: self.sig_emitted('gps_data', x)) + ld.start() + ld.wait() + self.app.processEvents() + + self.assertTrue(gps_df.equals(self._result['gps_data'])) diff --git a/tests/test_project.py b/tests/test_project.py index 3afedea..64c4806 100644 --- a/tests/test_project.py +++ b/tests/test_project.py @@ -3,11 +3,10 @@ import unittest import random import tempfile +from datetime import datetime, timedelta from pathlib import Path from .context import dgp -from dgp.lib.gravity_ingestor import read_at1a -from dgp.lib.trajectory_ingestor import import_trajectory from dgp.lib.project import * from dgp.lib.meterconfig import * @@ -39,23 +38,25 @@ def test_project_directory(self): leaf and use the parent path. """ with self.assertRaises(FileNotFoundError): - project = GravityProject(path=Path('tests/invalid_dir')) + project = GravityProject(path=Path('tests/invalid_dir'), + name='Test') with tempfile.TemporaryDirectory() as td: project_dir = Path(td) - project = GravityProject(path=project_dir) + project = GravityProject(path=project_dir, name='Test') self.assertEqual(project.projectdir, project_dir) # Test exception given a file instead of directory with tempfile.NamedTemporaryFile() as tf: tf.write(b"This is not a directory") with self.assertRaises(NotADirectoryError): - project = GravityProject(path=Path(str(tf.name))) + project = GravityProject(path=Path(str(tf.name)), name='Test') def test_pickle_project(self): # TODO: Add further complexity to testing of project pickling flight = Flight(self.project, 'test_flight', self.at1a5) - flight.add_line(100, 250.5) + line = FlightLine(0, 1, 0, None) + flight.add_line(line) self.project.add_flight(flight) with tempfile.TemporaryDirectory() as td: @@ -67,31 +68,18 @@ def test_pickle_project(self): self.assertEqual(len(list(loaded_project.flights)), 1) self.assertEqual(loaded_project.get_flight(flight.uid).uid, flight.uid) - self.assertEqual(loaded_project.get_flight(flight.uid).meter.name, 'AT1A-5') - - def test_flight_iteration(self): - test_flight = Flight(self.project, 'test_flight', self.at1a5) - line0 = test_flight.add_line(100.1, 200.2) - line1 = test_flight.add_line(210, 350.3) - lines = [line0, line1] - - for line in test_flight.lines: - self.assertTrue(line in lines) - - # TODO: Fix ImportWarning generated by pytables? - @unittest.skip('New add_data test not implemented') - def test_associate_flight_data(self): - """Test adding a data file and associating it with a specific flight""" - self.todelete.append('tests/prjdata.h5') # Cleanup when done - - flt = Flight(self.at1a5) - self.project.add_flight(flt) - data1 = 'tests/test_data.csv' + self.assertEqual(loaded_project.get_flight(flight.uid).meter.name, + 'AT1A-5') class TestFlight(unittest.TestCase): def setUp(self): self._trj_data_path = 'tests/sample_data/eotvos_short_input.txt' + hour = timedelta(hours=1) + self._line0 = FlightLine(datetime.now(), datetime.now()+hour) + self._line1 = FlightLine(datetime.now(), datetime.now()+hour+hour) + self.lines = [self._line0, self._line1] + self.flight = Flight(None, 'TestFlight', None) def test_flight_init(self): """Test initialization properties of a new Flight""" @@ -102,6 +90,31 @@ def test_flight_init(self): assert flt.channels == [] self.assertEqual(len(flt), 0) + def test_line_manipulation(self): + l0 = self.flight.add_line(self._line0) + self.assertEqual(0, l0) + self.flight.remove_line(self._line0.uid) + self.assertEqual(0, len(self.flight)) + + l1 = self.flight.add_line(self._line1) + self.assertEqual(1, l1) + l2 = self.flight.add_line(self._line0) + self.assertEqual(2, l2) + self.assertEqual(2, len(self.flight)) + + def test_flight_iteration(self): + l0 = self.flight.add_line(self._line0) + l1 = self.flight.add_line(self._line1) + # Test sequence numbers + self.assertEqual(0, l0) + self.assertEqual(1, l1) + + for line in self.flight.lines: + self.assertTrue(line in self.lines) + + for line in self.flight: + self.assertTrue(line in self.lines) + class TestMeterconfig(unittest.TestCase): def setUp(self): From e85b0a7d3bd4d2159064f93d44a6ec3770f94bd6 Mon Sep 17 00:00:00 2001 From: bradyzp Date: Sat, 6 Jan 2018 18:24:45 +0100 Subject: [PATCH 046/236] CLN: Moved plotter.py to gui package. Moved plotter.py to gui package as it logically belongs there. Made some minor changes to improve scaling/fitting of data series in plots. --- dgp/{lib => gui}/plotter.py | 77 +++++++++++++++++++++++++++++-------- 1 file changed, 60 insertions(+), 17 deletions(-) rename dgp/{lib => gui}/plotter.py (94%) diff --git a/dgp/lib/plotter.py b/dgp/gui/plotter.py similarity index 94% rename from dgp/lib/plotter.py rename to dgp/gui/plotter.py index c926e72..c23d27a 100644 --- a/dgp/lib/plotter.py +++ b/dgp/gui/plotter.py @@ -9,6 +9,7 @@ import logging from collections import namedtuple from typing import Dict, Tuple, Union +from datetime import timedelta from PyQt5.QtWidgets import QSizePolicy, QMenu, QAction, QWidget, QToolBar from PyQt5.QtCore import pyqtSignal, QMimeData @@ -95,6 +96,18 @@ def __init__(self, *axes, twin=False, parent=None): # Map ax index to x/y limits of original data self._base_ax_limits = {} + self._xmin = 1 + self._xmax = 2 + + def set_xminmax(self, xmin, xmax): + """This isn't ideal but will do until re-write of AxesGroup + Set the min/max plot limits based on data, so that we don't have to + calculate them within the Axes Group. + Used in the go_home method. + """ + self._xmin = xmin + self._xmax = max(xmax, self._xmax) + def __contains__(self, item: Axes): if item in self.axes.values(): return True @@ -115,7 +128,6 @@ def __getattr__(self, item): if hasattr(self._selected, item): return getattr(self._selected, item) else: - print("_active is None or doesn't have attribute: ", item) return lambda *x, **y: None @property @@ -214,9 +226,24 @@ def onmotion(self, event: MouseEvent): self._selected.move_patches(dx) def go_home(self): - """Autoscale the axes back to the data limits, and rescale patches.""" + """Autoscale the axes back to the data limits, and rescale patches. + + Keep in mind that the x-axis is shared, and so only need to be set + once if there is data. + """ for ax in self.all_axes: - ax.autoscale(True, 'both', False) + for line in ax.lines: # type: Line2D + y = line.get_ydata() + ax.set_ylim(y.min(), y.max()) + + try: + print("Setting ax0 xlim to min: {} max: {}".format(self._xmin, + self._xmax)) + self._ax0.xaxis_date() + self._ax0.set_xlim(self._xmin, self._xmax) + except: + _log.exception("Error setting ax0 xlim") + self.rescale_patches() def rescale_patches(self): @@ -317,10 +344,7 @@ class PatchGroup: """ def __init__(self, label: str='', uid=None, parent=None): self.parent = parent # type: AxesGroup - if uid is not None: - self.uid = uid - else: - self.uid = gen_uuid('ptc') + self.uid = uid or gen_uuid('ptc') self.label = label self.modified = False self.animated = False @@ -635,8 +659,7 @@ class BasePlottingCanvas(FigureCanvas): def __init__(self, parent=None, width=8, height=4, dpi=100): _log.debug("Initializing BasePlottingCanvas") - super().__init__(Figure(figsize=(width, height), - dpi=dpi, + super().__init__(Figure(figsize=(width, height), dpi=dpi, tight_layout=True)) self.setParent(parent) @@ -796,6 +819,9 @@ def set_plots(self, rows: int, cols=1, sharex=True, resample=False): plot = self.figure.add_subplot(rows, cols, i, sharex=plots[0]) else: plot = self.figure.add_subplot(rows, cols, i) # type: Axes + plot.xaxis.set_major_locator(AutoLocator()) + plot.set_xlim(1, 2) + plot.xaxis.set_major_formatter(DateFormatter('%H:%M:%S')) if resample: plot.callbacks.connect('xlim_changed', self._xlim_resample) plot.callbacks.connect('ylim_changed', self._on_ylim_changed) @@ -949,6 +975,20 @@ def add_series(self, dc: types.DataChannel, axes_idx: int=0, draw=True): color = 'blue' series = dc.series() + axes.autoscale(False) + + # Testing custom scaling: + # This should allow scaling to data without having to worry about + # patches + dt_margin = timedelta(minutes=2) + minx, maxx = series.index.min(), series.index.max() + self.ax_grp.set_xminmax(date2num(minx), date2num(maxx)) + miny, maxy = series.min(), series.max() + print("X Values from data: {}, {}".format(minx, maxx)) + print("Y Values from data: {}, {}".format(miny, maxy)) + axes.set_xlim(date2num(minx - dt_margin), date2num(maxx + dt_margin)) + axes.set_ylim(miny * 1.05, maxy * 1.05) + line_artist = axes.plot(series.index, series.values, color=color, label=dc.label)[0] @@ -962,6 +1002,8 @@ def add_series(self, dc: types.DataChannel, axes_idx: int=0, draw=True): self._series[dc.uid] = series # Store reference to series for resample self._lines[dc.uid] = line_artist + + # self.ax_grp.relim() self.ax_grp.rescale_patches() if draw: self.figure.canvas.draw() @@ -985,10 +1027,11 @@ def remove_series(self, dc: types.DataChannel): line = self._lines[dc.uid] # type: Line2D axes = line.axes + axes.autoscale(False) axes.lines.remove(line) axes.tick_params('y', colors='black') axes.set_ylabel('') - axes.relim() + axes.set_ylim(-1, 1) self.ax_grp.rescale_patches() del self._lines[dc.uid] @@ -996,8 +1039,8 @@ def remove_series(self, dc: types.DataChannel): if not len(self._lines): _log.warning("No Lines on any axes.") - self.axes[0].xaxis.set_major_locator(NullLocator()) - self.axes[0].xaxis.set_major_formatter(NullFormatter()) + # self.axes[0].xaxis.set_major_locator(NullLocator()) + # self.axes[0].xaxis.set_major_formatter(NullFormatter()) self.draw() @@ -1018,12 +1061,10 @@ def onclick(self, event: MouseEvent): return # Else, process the click event - _log.debug("Axes Click @ xdata: {}".format(event.xdata)) - active = self.ax_grp.select(event.xdata, inner=False) if not active: - _log.info("No patch at location: {}".format(event.xdata)) + pass if event.button == 3: # Right Click @@ -1038,8 +1079,6 @@ def onclick(self, event: MouseEvent): # We've selected and activated an existing group return # Else: Create a new PatchGroup - _log.info("Creating new patch group at: {}".format(event.xdata)) - try: pg = self.ax_grp.add_patch(event.xdata) except ValueError: @@ -1189,3 +1228,7 @@ def get_toolbar(self, parent=None) -> QToolBar: toolbar.actions()[5].triggered.connect(self.toggle_zoom) self._toolbar = toolbar return self._toolbar + + +class LineSelectionPlot(BasePlottingCanvas): + pass From 81364fcc112efb6bd2ab1ccd55e3db56f795d45e Mon Sep 17 00:00:00 2001 From: bradyzp Date: Mon, 15 Jan 2018 09:29:21 -0700 Subject: [PATCH 047/236] WIP: Cleanup and testing before merge. --- .gitignore | 2 + dgp/gui/main.py | 65 +- dgp/gui/models.py | 3 + dgp/gui/mplutils.py | 695 +++++++ dgp/gui/plotter.py | 8 +- dgp/gui/ui/splash_screen.ui | 2 +- dgp/gui/widgets.py | 15 +- dgp/lib/project.py | 3 + dgp/lib/types.py | 29 +- dgp/resources_rc.py | 3534 +++++++++++++++++------------------ examples/plot_example.py | 2 +- tests/test_eotvos.py | 13 - tests/test_plotters.py | 154 ++ 13 files changed, 2722 insertions(+), 1803 deletions(-) create mode 100644 dgp/gui/mplutils.py create mode 100644 tests/test_plotters.py diff --git a/.gitignore b/.gitignore index 0076095..8a8f5ae 100644 --- a/.gitignore +++ b/.gitignore @@ -15,3 +15,5 @@ docs/build/ # Specific Directives dgp/gui/ui/*.py examples/local* +tests/sample_data/eotvos_long_result.csv +tests/sample_data/eotvos_long_input.txt diff --git a/dgp/gui/main.py b/dgp/gui/main.py index b0dd411..47def53 100644 --- a/dgp/gui/main.py +++ b/dgp/gui/main.py @@ -110,6 +110,7 @@ def __init__(self, project: Union[prj.GravityProject, # Initialize Project Tree Display self.project_tree = ProjectTreeView(parent=self, project=self.project) self.project_tree.setMinimumWidth(250) + self.project_tree.item_removed.connect(self._project_item_removed) self.project_dock_grid.addWidget(self.project_tree, 0, 0, 1, 2) @property @@ -262,6 +263,30 @@ def _update_context_tree(self, model): self._context_tree.setModel(model) self._context_tree.expandAll() + def _project_item_removed(self, item: types.BaseTreeItem): + print("Got item: ", type(item), " in _prj_item_removed") + if isinstance(item, types.DataSource): + flt = item.flight + print("Dsource flt: ", flt) + # Error here, flt.uid is not in open_tabs when it should be. + if not flt.uid not in self._open_tabs: + print("Flt not in open tabs") + return + tab = self._open_tabs.get(flt.uid, None) # type: FlightTab + if tab is None: + print("tab not open") + return + try: + print("Calling tab.data_deleted") + tab.data_deleted(item) + except: + print("Exception of some sort encountered deleting item") + else: + print("Data deletion sucessful?") + + else: + return + def show_progress_dialog(self, title, start=0, stop=1, label=None, cancel="Cancel", modal=False, flags=None) -> QProgressDialog: @@ -299,7 +324,8 @@ def add_data(self, data, dtype, flight, path): return cols = list(data.keys()) - ds = types.DataSource(uid, path, cols, dtype) + ds = types.DataSource(uid, path, cols, dtype, x0=data.index.min(), + x1=data.index.max()) flight.register_data(ds) if flight.uid not in self._open_tabs: # If flight is not opened we don't need to update the plot @@ -435,6 +461,8 @@ def add_flight_dialog(self) -> None: # TODO: Move this into new module (e.g. gui/views.py) class ProjectTreeView(QTreeView): + item_removed = pyqtSignal(types.BaseTreeItem) + def __init__(self, project=None, parent=None): super().__init__(parent=parent) @@ -480,6 +508,10 @@ def contextMenuEvent(self, event: QtGui.QContextMenuEvent, *args, **kwargs): # lambda item: context_focus.__setattr__('active', True) # ) menu.addAction(data_action) + data_delete = QAction("Delete Data File") + data_delete.triggered.connect( + lambda: self._remove_data_action(context_focus)) + menu.addAction(data_delete) menu.addAction(info_action) menu.addAction(plot_action) @@ -490,18 +522,25 @@ def _plot_action(self, item): return def _info_action(self, item): - # if not (isinstance(item, prj.Flight) - # or isinstance(item, prj.GravityProject)): - # return - # for name, attr in item.__class__.__dict__.items(): - # - # if isinstance(attr, property): - # print("Have property bound to {}".format(name)) - # print("Value is: {}".format(item.__getattribute__(name))) dlg = PropertiesDialog(item, parent=self) dlg.exec_() - # model = TableModel(['Key', 'Value']) - # model.set_object(item) - # dialog = InfoDialog(model, parent=self) - # dialog.exec_() + def _remove_data_action(self, item: types.BaseTreeItem): + if not isinstance(item, types.DataSource): + return + # Confirmation Dialog + confirm = QtWidgets.QMessageBox(parent=self.parent()) + confirm.setStandardButtons(QtWidgets.QMessageBox.Ok) + confirm.setText("Are you sure you wish to delete: {}".format(item.filename)) + confirm.setIcon(QtWidgets.QMessageBox.Question) + confirm.setWindowTitle("Confirm Delete") + res = confirm.exec_() + if res: + print("Emitting item_removed signal") + self.item_removed.emit(item) + print("removing item from its flight") + try: + item.flight.remove_data(item) + except: + print("Exception occured removing item from flight") + diff --git a/dgp/gui/models.py b/dgp/gui/models.py index 7824270..1c26c79 100644 --- a/dgp/gui/models.py +++ b/dgp/gui/models.py @@ -430,15 +430,18 @@ def add_channels(self, *channels): self.update() def remove_source(self, dsrc): + print("Remove source called in CLM") for channel in self.channels: # type: DataChannel _log.debug("Orphaning and removing channel: {name}/{uid}".format( name=channel.label, uid=channel.uid)) if channel.source == dsrc: + self.channelChanged.emit(-1, channel) channel.orphan() try: del self.channels[channel.uid] except KeyError: pass + self.update() def update(self) -> None: """Update the models view layout.""" diff --git a/dgp/gui/mplutils.py b/dgp/gui/mplutils.py new file mode 100644 index 0000000..2ca44ca --- /dev/null +++ b/dgp/gui/mplutils.py @@ -0,0 +1,695 @@ +# coding: utf-8 + +# PROTOTYPE for new Axes Manager class + +import logging +from collections import namedtuple +from itertools import cycle, count, chain +from typing import Union, Tuple +from datetime import datetime, timedelta + +from pandas import Series +from matplotlib.figure import Figure +from matplotlib.axes import Axes +from matplotlib.dates import DateFormatter, date2num, num2date +from matplotlib.ticker import AutoLocator, ScalarFormatter, Formatter +from matplotlib.lines import Line2D +from matplotlib.patches import Patch, Rectangle +from matplotlib.gridspec import GridSpec +from mpl_toolkits.axes_grid1.inset_locator import inset_axes + +from dgp.lib.etc import gen_uuid + +_log = logging.getLogger(__name__) +EDGE_PROX = 0.005 + +""" +Notes/Thoughts WIP: + +What to do in instances where 2 data sets with greatly different X-ranges are +plotted together? Or some way to disallow this/screen when importing gps/grav. +E.g. when importing a GPS file when gravity is already present show warning +if the min/max values respectively differ by some percentage? +""" +COLOR_CYCLE = ['red', 'blue', 'green', 'orange', 'purple'] + + +def _pad(xy0: float, xy1: float, pct=0.05): + """Pads a given x/y limit pair by the specified percentage (as + float), and returns a tuple of the new values. + + Parameters + ---------- + xy0, xy1 : float + Limit values that correspond to the left/bottom and right/top + X or Y Axes limits respectively. + pct : float, optional + Percentage value by which to pad the supplied limits. + Default: 0.05 (5%) + """ + magnitude = abs(xy1) - abs(xy0) + pad = magnitude * pct + return xy0 - pad, xy1 + pad + + +class StackedAxesManager: + """ + StackedAxesManager is used to generate and manage a subplots on a + Matplotlib Figure. A specified number of subplots are generated and + displayed in rows (possibly add ability to add columns later). + The AxesManager provides an API to draw lines on specified axes rows, + and provides a means to track and update/change lines based on their + original Pandas Series data. + + Parameters + ---------- + figure : Figure + MPL Figure to create subplots (Axes) objects upon + rows : int, Optional + Number of rows of subplots to generate on the figure. + Default is 1 + xformatter : matplotlib.ticker.Formatter, optional + Supply a custom ticker Formatter for the x-axis, or use the default + DateFormatter. + + Notes (WIP) + ----------- + + AxesManager should create and manage a set of subplots displayed in a + rows. A twin-x axis is then 'stacked' behind each base axes on each row. + The manager should be general enough to support a number of use-cases: + 1. Line Grab Plot interface - user clicks on plots to add a rectangle + patch which is drawn at the same x-loc on all axes in the group + (uses PatchGroup class) + This plot uses Date indexes + 2. Transform Plot - 2 or more stacked plots used to plot data, + possibly indexed against a Date, or possibly indexed by lat/longitude. + This plot would not require line selection patches. + + In future would like to add ability to have a data 'inspection' line + - i.e. move mouse over and a text box will pop up with a vertical + line through the data, showing the value at intersection - don't know + proper name for that + + Add ability to switch xformatter without re-instantiating the Manager? + e.g. Plotting gravity vs time, then want to clear off time data and + plot grav vs long. Maybe auto-clear all lines/data from plot and + switch x-axis formatter. + + """ + def __init__(self, figure, rows=1, xformatter=None): + self.figure = figure + self.axes = {} + self._axes_color = {} + self._inset_axes = {} + + self._lines = {} + self._line_data = {} + self._line_lims = {} + self._line_id = count(start=1, step=1) + + self._base_x_lims = None + self._rows = rows + self._cols = 1 + self._padding = 0.05 + + self._xformatter = xformatter or DateFormatter('%H:%M:%S') + + spec = GridSpec(nrows=self._rows, ncols=self._cols) + + x0 = date2num(datetime.now()) + x1 = date2num(datetime.now() + timedelta(hours=1)) + self._ax0 = figure.add_subplot(spec[0]) # type: Axes + self.set_xlim(x0, x1) + + for i in range(0, rows): + if i == 0: + ax = self._ax0 + else: + ax = figure.add_subplot(spec[i], sharex=self._ax0) + if i == rows - 1: + ax.xaxis.set_major_locator(AutoLocator()) + ax.xaxis.set_major_formatter(self._xformatter) + else: + for lbl in ax.get_xticklabels(): + lbl.set_visible(False) + + ax.autoscale(False) + ax.grid(True) + twin = ax.twinx() + self.axes[i] = ax, twin + self._axes_color[i] = cycle(COLOR_CYCLE) + + def __len__(self): + """Return number of primary Axes managed by this Class""" + return len(self.axes) + + def __contains__(self, uid): + """Check if given UID refers to an active Line2D Class""" + return uid in self._lines + + def __getitem__(self, index): + """Return (Axes, Twin) pair at the given row index.""" + return self.axes[index] + + # Experimental + def add_inset_axes(self, row, position='upper right', height='15%', + width='15%', labels=False, **kwargs) -> Axes: + try: + return self._inset_axes[row] + except KeyError: + pass + + position_map = { + 'upper right': 1, + 'upper left': 2, + 'lower left': 3, + 'lower right': 4, + 'right': 5, + 'center left': 6, + 'center right': 7, + 'lower center': 8, + 'upper center': 9, + 'center': 10 + } + base_ax = self.get_axes(row) + if labels: + axes_kwargs = kwargs + else: + axes_kwargs = dict(xticklabels=[], yticklabels=[]) + axes_kwargs.update(kwargs) + + axes = inset_axes(base_ax, height, width, loc=position_map.get( + position, 1), axes_kwargs=axes_kwargs) + self._inset_axes[row] = axes + return axes + + def get_inset_axes(self, row) -> Union[Axes, None]: + """Retrieve Inset Axes for the primary Axes at specified row. + Note - support is currently only for a single inset axes per row.""" + return self._inset_axes.get(row, None) + + def get_axes(self, row, twin=False) -> Axes: + """Explicity retrieve an Axes from the given row, returning the Twin + axes if twin is True + + Notes + ----- + It is obviously possible to plot directly to the Axes returned by + this method, however you then give up the state tracking mechanisms + provided by the StackedAxesManager class, and will be responsible for + manually manipulating and scaling the Axes. + """ + ax0, ax1 = self.axes[row] + if twin: + return ax1 + return ax0 + + def add_series(self, series, row=0, uid=None, redraw=True, + fit='common', **plot_kwargs): + """ + Add and track a Pandas data Series to the specified subplot. + + Notes + ----- + Note on behavior, add_series will automatically select the least + populated axes of the pair (primary and twin-x) to plot the new + channel on, and if it is a tie will default to the primary. + + Parameters + ---------- + series : Series + Pandas data Series with index and values, to be plotted as x and y + respectively + row : int + Row index of the Axes to plot on + uid : str, optional + Optional UID to reference series by within Axes Manager, + else numerical ID will be assigned and returned by this function. + redraw : bool + If True, call figure.canvas.draw(), else the caller must ensure + to redraw the canvas at some point. + fit : EXPERIMENTAL + Keyword to determine x-axis fitting when data sets are different + lengths. + Options: (WIP) + common : fit x-axis to show common/overlapping data + What if there is no overlap? + inclusive : fit x-axis to all data + first : fit x-axis based on the first plotted data set + last : re-fit x-axis on latest data set + plot_kwargs : dict, optional + Optional dictionary of keyword arguments to be passed to the + Axes.plot method + + Returns + ------- + Union[str, int] : + UID of plotted channel + + """ + axes, twin = self.axes[row] + # Select least populated Axes + if len(axes.lines) <= len(twin.lines): + ax = axes + else: + ax = twin + + uid = uid or next(self._line_id) + + # Set the x-limits range if it hasn't been set yet + # We're assuming that all plotted data will conform to the same + # time-span currently, this behavior may need to change (esp if we're + # not dealing with time?) + x0, x1 = series.index.min(), series.index.max() + try: + x0 = date2num(x0) + x1 = date2num(x1) + except AttributeError: + pass + + if self._base_x_lims is None: + self.set_xlim(x0, x1) + self._base_x_lims = x0, x1 + else: + # TODO: Test/consider this logic - is it the desired behavior + # e.g. two datasets (gps/grav) where gravity is 1hr longer than GPS, + # should we auto-scale the x-axis to fit all of the data, + # or to the shortest? maybe give an option? + base_x0, base_x1 = self._base_x_lims + min_x0 = min(base_x0, x0) + max_x1 = max(base_x1, x1) + self.set_xlim(min_x0, max_x1) + self._base_x_lims = min_x0, max_x1 + + y0, y1 = series.min(), series.max() + + color = plot_kwargs.get('color', None) or next(self._axes_color[row]) + line = ax.plot(series.index, series.values, color=color, + **plot_kwargs)[0] + + self._lines[uid] = line + self._line_data[line] = series + self._line_lims[line] = x0, x1, y0, y1 + + ax.set_ylim(*_pad(y0, y1)) + + if redraw: + self.figure.canvas.draw() + + return uid + + def remove_series(self, *series_ids, redraw=True): + invalids = [] + for uid in series_ids: + if uid not in self._lines: + invalids.append(uid) + continue + + line = self._lines[uid] # type: Line2D + ax = line.axes # type: Axes + + line.remove() + del self._line_data[line] + del self._lines[uid] + + if len(ax.lines) == 0: + ax.set_ylim(-1, 1) + else: + # Rescale y if we allow more than 1 line per Axes + pass + + if redraw: + self.figure.canvas.draw() + + if invalids: + raise ValueError("Invalid UID's passed to remove_series: {}" + .format(invalids)) + + def get_ylim(self, idx, twin=False): + if twin: + return self.axes[idx + self._rows].get_ylim() + return self.axes[idx].get_ylim() + + # TODO: Resample logic + def resample(self, step): + """Resample all lines in all Axes by slicing with step.""" + + pass + + def set_xlim(self, left: float, right: float, padding=None): + """Set the base Axes xlims to the specified float values.""" + if padding is None: # Explicitly check for None, as 0 should be valid + padding = self._padding + self._ax0.set_xlim(*_pad(left, right, padding)) + + def get_x_ratio(self): + """Returns the ratio of the current plot width to the base plot width""" + if self._base_x_lims is None: + return 1.0 + base_w = self._base_x_lims[1] - self._base_x_lims[0] + cx0, cx1 = self.axes[0].get_xlim() + curr_w = cx1 - cx0 + return curr_w / base_w + + def reset_view(self, x_margin=None, y_margin=None): + """Reset limits of each Axes and Twin Axes to show entire data within + them""" + # Test the min/max logic here + if self._base_x_lims is None: + return + min_x0, max_x1 = self._base_x_lims + for uid, line in self._lines.items(): + ax = line.axes # type: Axes + data = self._line_data[line] # type: Series + x0, x1, y0, y1 = self._line_lims[line] + ax.set_ylim(*_pad(y0, y1)) + + if not min_x0: + min_x0 = max(min_x0, x0) + else: + min_x0 = min(min_x0, x0) + max_x1 = max(max_x1, x1) + + self.set_xlim(min_x0, max_x1) + + +class RectanglePatchGroup: + """ + Group related matplotlib Rectangle Patches which share an x axis on + different Axes/subplots. + Current use case is for Flight-line selection rectangles, but this could + be expanded. + + + Notes/TODO: + ----------- + Possibly create base PatchGroup class with specialized classes for + specific functions e.g. Flight-line selection, and data pointer (show + values on data with vertical line through) + + """ + def __init__(self, *patches, label: str='', uid=None): + self.uid = uid or gen_uuid('ptc') + self.label = label + self.modified = False + self.animated = False + + self._patches = {i: patch for i, patch in enumerate(patches)} + self._p0 = patches[0] # type: Rectangle + self._labels = {} # type: Dict[int, Annotation] + self._bgs = {} + # Store x location on animation for delta movement + self._x0 = 0 + # Original width must be stored for stretch + self._width = 0 + self._stretching = None + + @property + def x(self): + if self._p0 is None: + return None + return self._p0.get_x() + + @property + def stretching(self): + return self._stretching + + @property + def width(self): + """Return the width of the patches in this group (all patches have + same width)""" + return self._p0.get_width() + + def hide(self): + for item in chain(self._patches.values(), self._labels.values()): + item.set_visible(False) + + def show(self): + for item in chain(self._patches.values(), self._labels.values()): + item.set_visible(True) + + def contains(self, xdata, prox=EDGE_PROX): + """Check if an x-coordinate is contained within the bounds of this + patch group, with an optional proximity modifier.""" + prox = self._scale_prox(prox) + x0 = self._p0.get_x() + width = self._p0.get_width() + return x0 - prox <= xdata <= x0 + width + prox + + def add_patch(self, plot_index: int, patch: Rectangle): + if not len(self._patches): + # Record attributes of first added patch for reference + self._p0 = patch + self._patches[plot_index] = patch + + def remove(self): + """Delete this patch group and associated labels from the axes's""" + self.unanimate() + for item in chain(self._patches.values(), self._labels.values()): + item.remove() + self._p0 = None + + def start(self): + """Return the start x-location of this patch group as a Date Locator""" + for patch in self._patches.values(): + return num2date(patch.get_x()) + + def stop(self): + """Return the stop x-location of this patch group as a Data Locator""" + if self._p0 is None: + return None + return num2date(self._p0.get_x() + self._p0.get_width()) + + def get_edge(self, xdata, prox=EDGE_PROX, inner=False): + """Get the edge that the mouse is in proximity to, or None if it is + not.""" + left = self._p0.get_x() + right = left + self._p0.get_width() + prox = self._scale_prox(prox) + + if left - (prox * int(not inner)) <= xdata <= left + prox: + return 'left' + if right - prox <= xdata <= right + (prox * int(not inner)): + return 'right' + return None + + def set_edge(self, edge: str, color: str, select: bool=False): + """Set the given edge color, and set the Group stretching factor if + select""" + if edge not in {'left', 'right'}: + color = (0.0, 0.0, 0.0, 0.1) # black, 10% alpha + self._stretching = None + elif select: + _log.debug("Setting stretch to: {}".format(edge)) + self._stretching = edge + for patch in self._patches.values(): # type: Rectangle + if patch.get_edgecolor() != color: + patch.set_edgecolor(color) + patch.axes.draw_artist(patch) + else: + break + + def animate(self) -> None: + """ + Animate all artists contained in this PatchGroup, and record the x + location of the group. + Matplotlibs Artist.set_animated serves to remove the artists from the + canvas bbox, so that we can copy a rasterized bbox of the rest of the + canvas and then blit it back as we move or modify the animated artists. + This means that a complete redraw only has to be done for the + selected artists, not the entire canvas. + + """ + _log.debug("Animating patches") + if self._p0 is None: + raise AttributeError("No patches exist") + self._x0 = self._p0.get_x() + self._width = self._p0.get_width() + + for i, patch in self._patches.items(): # type: int, Rectangle + patch.set_animated(True) + try: + self._labels[i].set_animated(True) + except KeyError: + pass + canvas = patch.figure.canvas + # Need to draw the canvas once after animating to remove the + # animated patch from the bbox - but this introduces significant + # lag between the mouse click and the beginning of the animation. + # canvas.draw() + bg = canvas.copy_from_bbox(patch.axes.bbox) + self._bgs[i] = bg + canvas.restore_region(bg) + patch.axes.draw_artist(patch) + canvas.blit(patch.axes.bbox) + + self.animated = True + return + + def unanimate(self) -> None: + if not self.animated: + return + for patch in self._patches.values(): + patch.set_animated(False) + for label in self._labels.values(): + label.set_animated(False) + + self._bgs = {} + self._stretching = False + self.animated = False + return + + def set_label(self, label: str, index=None) -> None: + """ + Set the label on these patches. Centered vertically and horizontally. + + Parameters + ---------- + label : str + String to label the patch group with. + index : Union[int, None], optional + The patch index to set the label of. If None, all patch labels will + be set to the same value. + + """ + if label is None: + # Fixes a label being displayed as 'None' + label = '' + + self.label = label + + if index is not None: + patches = {index: self._patches[index]} + else: + patches = self._patches + + for i, patch in patches.items(): + px = patch.get_x() + patch.get_width() * 0.5 + ylims = patch.axes.get_ylim() + py = ylims[0] + abs(ylims[1] - ylims[0]) * 0.5 + + annotation = patch.axes.annotate(label, + xy=(px, py), + weight='bold', + fontsize=6, + ha='center', + va='center', + annotation_clip=False) + self._labels[i] = annotation + self.modified = True + + def shift_x(self, dx) -> None: + """ + Move or stretch patches by dx, action depending on activation + location i.e. when animate was called on the group. + + Parameters + ---------- + dx : float + Delta x, positive or negative float value to move or stretch the + group + + """ + if self._stretching is not None: + return self._stretch(dx) + for i in self._patches: + patch = self._patches[i] # type: Rectangle + patch.set_x(self._x0 + dx) + + canvas = patch.figure.canvas # type: FigureCanvas + canvas.restore_region(self._bgs[i]) + # Must draw_artist after restoring region, or they will be hidden + patch.axes.draw_artist(patch) + + cx, cy = self._patch_center(patch) + self._move_label(i, cx, cy) + + canvas.blit(patch.axes.bbox) + self.modified = True + + def fit_height(self) -> None: + """Adjust Height based on axes limits""" + for i, patch in self._patches.items(): + ylims = patch.axes.get_ylim() + height = abs(ylims[1]) + abs(ylims[0]) + patch.set_y(ylims[0]) + patch.set_height(height) + patch.axes.draw_artist(patch) + self._move_label(i, *self._patch_center(patch)) + + def _stretch(self, dx) -> None: + if self._p0 is None: + return None + width = self._width + if self._stretching == 'left' and width - dx > 0: + for i, patch in self._patches.items(): + patch.set_x(self._x0 + dx) + patch.set_width(width - dx) + elif self._stretching == 'right' and width + dx > 0: + for i, patch in self._patches.items(): + patch.set_width(width + dx) + else: + return + + for i, patch in self._patches.items(): + axes = patch.axes + cx, cy = self._patch_center(patch) + canvas = patch.figure.canvas + canvas.restore_region(self._bgs[i]) + axes.draw_artist(patch) + self._move_label(i, cx, cy) + + canvas.blit(axes.bbox) + + self.modified = True + + def _move_label(self, index, x, y) -> None: + """ + Move labels in this group to new position x, y + + Parameters + ---------- + index : int + Axes index of the label to move + x, y : int + x, y location to move the label + + """ + label = self._labels.get(index, None) + if label is None: + return + label.set_position((x, y)) + label.axes.draw_artist(label) + + def _scale_prox(self, pct: float): + """ + Take a decimal percentage and return the apropriate Axes unit value + based on the x-axis limits of the current plot. + This ensures that methods using a proximity selection modifier behave + the same, independant of the x-axis scale or size. + + Parameters + ---------- + pct : float + Percent value expressed as float + + Returns + ------- + float + proximity value converted to Matplotlib Axes scale value + + """ + if self._p0 is None: + return 0 + x0, x1 = self._p0.axes.get_xlim() + return (x1 - x0) * pct + + @staticmethod + def _patch_center(patch) -> Tuple[int, int]: + """Utility method to calculate the horizontal and vertical center + point of the specified patch""" + cx = patch.get_x() + patch.get_width() * 0.5 + ylims = patch.axes.get_ylim() + cy = ylims[0] + abs(ylims[1] - ylims[0]) * 0.5 + return cx, cy diff --git a/dgp/gui/plotter.py b/dgp/gui/plotter.py index c23d27a..3bec90a 100644 --- a/dgp/gui/plotter.py +++ b/dgp/gui/plotter.py @@ -326,6 +326,7 @@ def add_patch(self, xdata, start=None, stop=None, uid=None, label=None) \ rect = Rectangle((x0, ylim[0]), width, height*2, alpha=0.1, picker=True, edgecolor='black', linewidth=2) patch = ax.add_patch(rect) + patch.set_picker(True) ax.draw_artist(patch) pg.add_patch(i, patch) @@ -666,15 +667,16 @@ def __init__(self, parent=None, width=8, height=4, dpi=100): super().setSizePolicy(QSizePolicy.Expanding, QSizePolicy.Expanding) super().updateGeometry() + self.figure.canvas.mpl_connect('pick_event', self.onpick) self.figure.canvas.mpl_connect('button_press_event', self.onclick) self.figure.canvas.mpl_connect('button_release_event', self.onrelease) self.figure.canvas.mpl_connect('motion_notify_event', self.onmotion) - self.figure.canvas.mpl_connect('pick_event', self.onpick) def onclick(self, event: MouseEvent): pass def onpick(self, event: PickEvent): + print("On pick called in BasePlottingCanvas") pass def onrelease(self, event: MouseEvent): @@ -710,6 +712,7 @@ def __init__(self, flight: Flight, rows: int=1, title=None, parent=None): # Set initial sub-plot layout self._plots = self.set_plots(rows=rows, sharex=True, resample=True) self.ax_grp = AxesGroup(*self._plots.values(), twin=True, parent=self) + self.figure.canvas.mpl_connect('pick_event', self.onpick) # Experimental self.setAcceptDrops(False) @@ -1047,6 +1050,9 @@ def remove_series(self, dc: types.DataChannel): def get_series_by_label(self, label: str): pass + def onpick(self, event: PickEvent): + print("Pick event handled for artist: ", event.artist) + def onclick(self, event: MouseEvent): if self._zooming or self._panning: # Possibly hide all artists here to speed up panning diff --git a/dgp/gui/ui/splash_screen.ui b/dgp/gui/ui/splash_screen.ui index 2227623..2e395d1 100644 --- a/dgp/gui/ui/splash_screen.ui +++ b/dgp/gui/ui/splash_screen.ui @@ -21,7 +21,7 @@ - :/icons/dgs:/icons/dgs + :/images/geoid:/images/geoid diff --git a/dgp/gui/widgets.py b/dgp/gui/widgets.py index 5d1b2c4..5ffde5b 100644 --- a/dgp/gui/widgets.py +++ b/dgp/gui/widgets.py @@ -6,14 +6,14 @@ from PyQt5.QtGui import (QDropEvent, QDragEnterEvent, QDragMoveEvent, QContextMenuEvent) -from PyQt5.QtCore import QMimeData, Qt, pyqtSignal, pyqtBoundSignal +from PyQt5.QtCore import Qt, pyqtSignal, pyqtBoundSignal from PyQt5.QtWidgets import (QWidget, QVBoxLayout, QGridLayout, QTabWidget, - QTreeView, QStackedWidget, QSizePolicy) + QTreeView, QSizePolicy) import PyQt5.QtWidgets as QtWidgets import PyQt5.QtGui as QtGui -from dgp.lib.plotter import LineGrabPlot, LineUpdate +from .plotter import LineGrabPlot, LineUpdate from dgp.lib.project import Flight import dgp.gui.models as models import dgp.lib.types as types @@ -101,9 +101,11 @@ def data_modified(self, action: str, dsrc: types.DataSource): if action.lower() == 'add': self.log.info("Adding channels to model.") self.model.add_channels(*dsrc.get_channels()) - if action.lower() == 'remove': + elif action.lower() == 'remove': self.log.info("Removing channels from model.") self.model.remove_source(dsrc) + else: + print("Unexpected action received") def _on_modified_line(self, info: LineUpdate): flight = self._flight @@ -256,6 +258,11 @@ def new_data(self, dsrc: types.DataSource): for tab in [self._plot_tab, self._transform_tab, self._map_tab]: tab.data_modified('add', dsrc) + def data_deleted(self, dsrc): + for tab in [self._plot_tab]: + print("Calling remove for each tab") + tab.data_modified('remove', dsrc) + @property def flight(self): return self._flight diff --git a/dgp/lib/project.py b/dgp/lib/project.py index 5ddcd34..959d5d8 100644 --- a/dgp/lib/project.py +++ b/dgp/lib/project.py @@ -358,6 +358,9 @@ def register_data(self, datasrc: DataSource): # datasrc.active = True # self.update() + def remove_data(self, datasrc: DataSource) -> bool: + return self.get_child(self._data_uid).remove_child(datasrc) + def add_line(self, line: FlightLine) -> int: """Add a flight line to the flight by start/stop index and sequence number. diff --git a/dgp/lib/types.py b/dgp/lib/types.py index 3ab904d..0558449 100644 --- a/dgp/lib/types.py +++ b/dgp/lib/types.py @@ -406,6 +406,15 @@ def sequence(self) -> int: def sequence(self, value: int): self._sequence = value + def update_line(self, start=None, stop=None, label=None): + """Allow update to one or more line properties while only triggering UI + update once.""" + # TODO: Testing + self._start = start or self._start + self._stop = stop or self._stop + self._label = label or self._label + self.update() + def data(self, role): if role == QtDataRoles.DisplayRole: if self.label: @@ -452,9 +461,7 @@ class DataSource(BaseTreeItem): """ def __init__(self, uid, filename: str, fields: List[str], - dtype: enums.DataTypes): - """Create a DataSource item with UID matching the managed file UID - that it points to.""" + dtype: enums.DataTypes, x0=None, x1=None): super().__init__(uid) self.filename = filename self.fields = fields @@ -462,6 +469,16 @@ def __init__(self, uid, filename: str, fields: List[str], self._flight = None self._active = False + self._x0 = x0 or 1 + self._x1 = x1 or 2 + + def delete(self): + if self.flight: + try: + self.flight.remove_data(self) + except AttributeError: + _log.error("Error removing data source from flight") + @property def flight(self): return self._flight @@ -488,6 +505,9 @@ def active(self, value: bool): else: self._active = False + def get_xlim(self): + return self._x0, self._x1 + def get_channels(self) -> List['DataChannel']: """ Create a new list of DataChannels. @@ -552,6 +572,9 @@ def series(self, force=False) -> Series: """ return self.source.load(self.field) + def get_xlim(self): + return self.source.get_xlim() + def data(self, role: QtDataRoles): if role == QtDataRoles.DisplayRole: return self.label diff --git a/dgp/resources_rc.py b/dgp/resources_rc.py index 243b100..c003ebe 100644 --- a/dgp/resources_rc.py +++ b/dgp/resources_rc.py @@ -9,1708 +9,7 @@ from PyQt5 import QtCore qt_resource_data = b"\ -\x00\x00\x01\x8d\ -\x89\ -\x50\x4e\x47\x0d\x0a\x1a\x0a\x00\x00\x00\x0d\x49\x48\x44\x52\x00\ -\x00\x00\x20\x00\x00\x00\x20\x08\x06\x00\x00\x00\x73\x7a\x7a\xf4\ -\x00\x00\x00\x09\x70\x48\x59\x73\x00\x00\x0e\xc4\x00\x00\x0e\xc4\ 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-\xaf\x08\xe0\x4c\x78\x49\xda\x15\x41\x3b\xca\x4a\x6b\x13\x3e\x00\ -\x38\x65\xfb\xc9\x80\xfc\xf4\x23\x9b\xcd\xee\x3c\xdf\xc3\xc0\x77\ -\x4d\xc9\xc0\x2f\x00\xdc\xdb\x7b\xcf\x8c\x5d\xc0\x6c\xe8\xc0\x70\ -\x9b\xf0\x19\x40\x91\x0f\x6e\xb7\xdb\x12\xb2\x20\x58\x54\x92\x97\ -\x17\x00\x57\xdb\x59\xfd\x8c\x7a\x1c\xdb\x7c\x48\x3e\x9f\x67\xc9\ -\xf0\xc1\xe2\x86\xa4\x1d\xfc\x4e\xf0\x64\x44\x9c\x60\x95\x5f\xb3\ -\xd4\xe2\xbc\x15\xe7\xdc\x4a\x2e\x06\xb4\xa2\x9f\x13\xa4\x4e\x27\ -\x42\x0b\x10\xdc\x59\x5c\x30\x98\x31\x44\xd8\x5b\x11\xf7\x21\x04\ -\x04\x23\x67\x86\x9f\x08\xcb\xb2\x78\x88\xf1\x66\xb1\x15\x70\xa2\ -\xf5\x7f\x81\x6b\x6b\x5d\x39\x1f\x3c\xb0\x4d\x5d\x72\xa1\x42\xa8\ -\x53\x44\xa4\x5d\x10\x47\x04\x6d\x27\xd2\x25\x2e\x8b\xc8\x21\x0c\ -\x9f\x09\x15\x09\xa1\x7e\x07\x54\x27\xec\x7f\x66\xbb\x08\x33\x38\ -\xf9\x00\x42\x2a\xf8\x75\xcc\x94\x1e\x79\x00\x00\x00\x00\x49\x45\ -\x4e\x44\xae\x42\x60\x82\ -\x00\x00\x50\x2b\ -\x2f\ -\x2a\x20\x58\x50\x4d\x20\x2a\x2f\x0a\x73\x74\x61\x74\x69\x63\x20\ -\x63\x68\x61\x72\x20\x2a\x20\x43\x3a\x5c\x55\x73\x65\x72\x73\x5c\ -\x62\x72\x61\x64\x79\x7a\x70\x5c\x4f\x6e\x65\x44\x72\x69\x76\x65\ -\x5c\x44\x6f\x63\x75\x6d\x65\x6e\x74\x73\x5c\x44\x47\x53\x49\x63\ -\x6f\x6e\x5f\x78\x70\x6d\x5b\x5d\x20\x3d\x20\x7b\x0a\x22\x34\x38\ -\x20\x34\x38\x20\x39\x37\x37\x20\x32\x22\x2c\x0a\x22\x20\x20\x09\ -\x63\x20\x4e\x6f\x6e\x65\x22\x2c\x0a\x22\x2e\x20\x09\x63\x20\x23\ -\x44\x31\x43\x44\x44\x39\x22\x2c\x0a\x22\x2b\x20\x09\x63\x20\x23\ -\x42\x38\x42\x33\x43\x36\x22\x2c\x0a\x22\x40\x20\x09\x63\x20\x23\ -\x41\x32\x39\x42\x42\x35\x22\x2c\x0a\x22\x23\x20\x09\x63\x20\x23\ -\x39\x34\x38\x43\x41\x39\x22\x2c\x0a\x22\x24\x20\x09\x63\x20\x23\ -\x38\x44\x38\x34\x41\x34\x22\x2c\x0a\x22\x25\x20\x09\x63\x20\x23\ -\x39\x32\x38\x41\x41\x38\x22\x2c\x0a\x22\x26\x20\x09\x63\x20\x23\ -\x41\x30\x39\x38\x42\x33\x22\x2c\x0a\x22\x2a\x20\x09\x63\x20\x23\ -\x42\x33\x41\x45\x43\x32\x22\x2c\x0a\x22\x3d\x20\x09\x63\x20\x23\ -\x43\x42\x43\x38\x44\x35\x22\x2c\x0a\x22\x2d\x20\x09\x63\x20\x23\ -\x45\x34\x45\x32\x45\x39\x22\x2c\x0a\x22\x3b\x20\x09\x63\x20\x23\ -\x41\x46\x41\x42\x43\x30\x22\x2c\x0a\x22\x3e\x20\x09\x63\x20\x23\ -\x37\x45\x37\x36\x39\x41\x22\x2c\x0a\x22\x2c\x20\x09\x63\x20\x23\ -\x35\x44\x35\x32\x37\x45\x22\x2c\x0a\x22\x27\x20\x09\x63\x20\x23\ -\x34\x37\x33\x41\x36\x44\x22\x2c\x0a\x22\x29\x20\x09\x63\x20\x23\ -\x33\x46\x33\x31\x36\x37\x22\x2c\x0a\x22\x21\x20\x09\x63\x20\x23\ -\x33\x39\x32\x42\x36\x33\x22\x2c\x0a\x22\x7e\x20\x09\x63\x20\x23\ -\x33\x32\x32\x34\x36\x30\x22\x2c\x0a\x22\x7b\x20\x09\x63\x20\x23\ -\x32\x44\x32\x30\x35\x44\x22\x2c\x0a\x22\x5d\x20\x09\x63\x20\x23\ -\x32\x46\x32\x31\x35\x46\x22\x2c\x0a\x22\x5e\x20\x09\x63\x20\x23\ -\x32\x46\x32\x31\x35\x45\x22\x2c\x0a\x22\x2f\x20\x09\x63\x20\x23\ -\x32\x44\x31\x46\x35\x45\x22\x2c\x0a\x22\x28\x20\x09\x63\x20\x23\ -\x33\x31\x32\x35\x36\x33\x22\x2c\x0a\x22\x5f\x20\x09\x63\x20\x23\ -\x34\x32\x33\x37\x37\x30\x22\x2c\x0a\x22\x3a\x20\x09\x63\x20\x23\ -\x36\x45\x36\x36\x39\x31\x22\x2c\x0a\x22\x3c\x20\x09\x63\x20\x23\ -\x41\x35\x41\x30\x42\x39\x22\x2c\x0a\x22\x5b\x20\x09\x63\x20\x23\ -\x45\x31\x44\x46\x45\x35\x22\x2c\x0a\x22\x7d\x20\x09\x63\x20\x23\ -\x46\x45\x46\x45\x46\x44\x22\x2c\x0a\x22\x7c\x20\x09\x63\x20\x23\ -\x44\x41\x45\x34\x45\x38\x22\x2c\x0a\x22\x31\x20\x09\x63\x20\x23\ -\x38\x34\x41\x34\x42\x41\x22\x2c\x0a\x22\x32\x20\x09\x63\x20\x23\ -\x33\x34\x36\x41\x39\x31\x22\x2c\x0a\x22\x33\x20\x09\x63\x20\x23\ -\x33\x36\x36\x43\x39\x34\x22\x2c\x0a\x22\x34\x20\x09\x63\x20\x23\ -\x36\x34\x38\x45\x41\x44\x22\x2c\x0a\x22\x35\x20\x09\x63\x20\x23\ -\x36\x36\x38\x46\x41\x44\x22\x2c\x0a\x22\x36\x20\x09\x63\x20\x23\ -\x39\x45\x39\x38\x42\x33\x22\x2c\x0a\x22\x37\x20\x09\x63\x20\x23\ -\x35\x39\x34\x46\x37\x46\x22\x2c\x0a\x22\x38\x20\x09\x63\x20\x23\ -\x32\x38\x31\x44\x35\x44\x22\x2c\x0a\x22\x39\x20\x09\x63\x20\x23\ -\x32\x38\x31\x42\x35\x43\x22\x2c\x0a\x22\x30\x20\x09\x63\x20\x23\ -\x33\x42\x32\x44\x36\x34\x22\x2c\x0a\x22\x61\x20\x09\x63\x20\x23\ -\x33\x45\x32\x46\x36\x35\x22\x2c\x0a\x22\x62\x20\x09\x63\x20\x23\ -\x33\x33\x32\x35\x36\x30\x22\x2c\x0a\x22\x63\x20\x09\x63\x20\x23\ -\x32\x38\x31\x42\x35\x42\x22\x2c\x0a\x22\x64\x20\x09\x63\x20\x23\ -\x32\x32\x31\x36\x35\x39\x22\x2c\x0a\x22\x65\x20\x09\x63\x20\x23\ -\x32\x31\x31\x35\x35\x39\x22\x2c\x0a\x22\x66\x20\x09\x63\x20\x23\ -\x32\x32\x31\x35\x35\x39\x22\x2c\x0a\x22\x67\x20\x09\x63\x20\x23\ -\x32\x32\x31\x35\x35\x41\x22\x2c\x0a\x22\x68\x20\x09\x63\x20\x23\ -\x32\x31\x31\x34\x35\x39\x22\x2c\x0a\x22\x69\x20\x09\x63\x20\x23\ -\x32\x30\x31\x33\x35\x38\x22\x2c\x0a\x22\x6a\x20\x09\x63\x20\x23\ -\x32\x33\x31\x36\x35\x39\x22\x2c\x0a\x22\x6b\x20\x09\x63\x20\x23\ -\x34\x41\x34\x30\x37\x34\x22\x2c\x0a\x22\x6c\x20\x09\x63\x20\x23\ -\x39\x30\x38\x41\x41\x38\x22\x2c\x0a\x22\x6d\x20\x09\x63\x20\x23\ -\x39\x32\x41\x35\x42\x44\x22\x2c\x0a\x22\x6e\x20\x09\x63\x20\x23\ -\x34\x30\x37\x34\x39\x38\x22\x2c\x0a\x22\x6f\x20\x09\x63\x20\x23\ -\x34\x32\x37\x35\x39\x38\x22\x2c\x0a\x22\x70\x20\x09\x63\x20\x23\ -\x39\x35\x42\x31\x43\x34\x22\x2c\x0a\x22\x71\x20\x09\x63\x20\x23\ -\x45\x31\x45\x38\x45\x44\x22\x2c\x0a\x22\x72\x20\x09\x63\x20\x23\ -\x46\x43\x46\x43\x46\x43\x22\x2c\x0a\x22\x73\x20\x09\x63\x20\x23\ -\x45\x46\x46\x34\x46\x36\x22\x2c\x0a\x22\x74\x20\x09\x63\x20\x23\ -\x33\x45\x37\x31\x39\x37\x22\x2c\x0a\x22\x75\x20\x09\x63\x20\x23\ -\x36\x33\x35\x38\x38\x35\x22\x2c\x0a\x22\x76\x20\x09\x63\x20\x23\ -\x32\x38\x31\x43\x35\x43\x22\x2c\x0a\x22\x77\x20\x09\x63\x20\x23\ -\x32\x42\x31\x45\x35\x44\x22\x2c\x0a\x22\x78\x20\x09\x63\x20\x23\ -\x32\x46\x32\x32\x35\x46\x22\x2c\x0a\x22\x79\x20\x09\x63\x20\x23\ -\x32\x34\x31\x37\x35\x41\x22\x2c\x0a\x22\x7a\x20\x09\x63\x20\x23\ -\x32\x37\x31\x41\x35\x42\x22\x2c\x0a\x22\x41\x20\x09\x63\x20\x23\ -\x32\x45\x32\x31\x35\x44\x22\x2c\x0a\x22\x42\x20\x09\x63\x20\x23\ -\x32\x36\x31\x41\x35\x43\x22\x2c\x0a\x22\x43\x20\x09\x63\x20\x23\ -\x31\x46\x31\x33\x35\x37\x22\x2c\x0a\x22\x44\x20\x09\x63\x20\x23\ -\x32\x32\x31\x35\x35\x38\x22\x2c\x0a\x22\x45\x20\x09\x63\x20\x23\ -\x32\x33\x31\x37\x35\x42\x22\x2c\x0a\x22\x46\x20\x09\x63\x20\x23\ -\x32\x41\x31\x45\x35\x44\x22\x2c\x0a\x22\x47\x20\x09\x63\x20\x23\ -\x33\x33\x32\x36\x36\x30\x22\x2c\x0a\x22\x48\x20\x09\x63\x20\x23\ -\x32\x46\x32\x35\x36\x30\x22\x2c\x0a\x22\x49\x20\x09\x63\x20\x23\ -\x32\x33\x32\x39\x36\x35\x22\x2c\x0a\x22\x4a\x20\x09\x63\x20\x23\ -\x34\x37\x35\x39\x38\x37\x22\x2c\x0a\x22\x4b\x20\x09\x63\x20\x23\ -\x44\x33\x44\x41\x45\x31\x22\x2c\x0a\x22\x4c\x20\x09\x63\x20\x23\ -\x46\x44\x46\x45\x46\x44\x22\x2c\x0a\x22\x4d\x20\x09\x63\x20\x23\ -\x46\x45\x46\x45\x46\x45\x22\x2c\x0a\x22\x4e\x20\x09\x63\x20\x23\ -\x45\x36\x45\x44\x46\x30\x22\x2c\x0a\x22\x4f\x20\x09\x63\x20\x23\ -\x33\x35\x36\x42\x39\x32\x22\x2c\x0a\x22\x50\x20\x09\x63\x20\x23\ -\x39\x32\x38\x41\x41\x37\x22\x2c\x0a\x22\x51\x20\x09\x63\x20\x23\ -\x33\x32\x32\x36\x36\x31\x22\x2c\x0a\x22\x52\x20\x09\x63\x20\x23\ -\x32\x43\x31\x46\x35\x45\x22\x2c\x0a\x22\x53\x20\x09\x63\x20\x23\ -\x32\x32\x31\x36\x35\x38\x22\x2c\x0a\x22\x54\x20\x09\x63\x20\x23\ -\x33\x30\x32\x33\x35\x46\x22\x2c\x0a\x22\x55\x20\x09\x63\x20\x23\ -\x32\x34\x31\x37\x35\x39\x22\x2c\x0a\x22\x56\x20\x09\x63\x20\x23\ -\x32\x35\x31\x38\x35\x41\x22\x2c\x0a\x22\x57\x20\x09\x63\x20\x23\ -\x32\x43\x31\x46\x35\x43\x22\x2c\x0a\x22\x58\x20\x09\x63\x20\x23\ -\x33\x31\x32\x34\x35\x46\x22\x2c\x0a\x22\x59\x20\x09\x63\x20\x23\ -\x32\x46\x32\x32\x36\x30\x22\x2c\x0a\x22\x5a\x20\x09\x63\x20\x23\ -\x32\x30\x31\x33\x35\x37\x22\x2c\x0a\x22\x60\x20\x09\x63\x20\x23\ -\x32\x36\x31\x39\x35\x42\x22\x2c\x0a\x22\x20\x2e\x09\x63\x20\x23\ -\x32\x46\x32\x32\x35\x45\x22\x2c\x0a\x22\x2e\x2e\x09\x63\x20\x23\ -\x33\x31\x32\x34\x36\x31\x22\x2c\x0a\x22\x2b\x2e\x09\x63\x20\x23\ -\x32\x44\x32\x30\x35\x45\x22\x2c\x0a\x22\x40\x2e\x09\x63\x20\x23\ -\x33\x33\x32\x38\x36\x32\x22\x2c\x0a\x22\x23\x2e\x09\x63\x20\x23\ -\x32\x46\x32\x34\x36\x30\x22\x2c\x0a\x22\x24\x2e\x09\x63\x20\x23\ -\x32\x32\x31\x38\x35\x41\x22\x2c\x0a\x22\x25\x2e\x09\x63\x20\x23\ -\x37\x36\x36\x46\x39\x37\x22\x2c\x0a\x22\x26\x2e\x09\x63\x20\x23\ -\x44\x35\x44\x33\x44\x45\x22\x2c\x0a\x22\x2a\x2e\x09\x63\x20\x23\ -\x42\x37\x43\x41\x44\x36\x22\x2c\x0a\x22\x3d\x2e\x09\x63\x20\x23\ -\x32\x39\x36\x31\x38\x42\x22\x2c\x0a\x22\x2d\x2e\x09\x63\x20\x23\ -\x43\x46\x44\x42\x45\x33\x22\x2c\x0a\x22\x3b\x2e\x09\x63\x20\x23\ -\x44\x39\x44\x36\x44\x45\x22\x2c\x0a\x22\x3e\x2e\x09\x63\x20\x23\ -\x38\x32\x37\x38\x39\x42\x22\x2c\x0a\x22\x2c\x2e\x09\x63\x20\x23\ -\x32\x34\x31\x38\x35\x39\x22\x2c\x0a\x22\x27\x2e\x09\x63\x20\x23\ -\x32\x39\x31\x44\x35\x43\x22\x2c\x0a\x22\x29\x2e\x09\x63\x20\x23\ -\x32\x30\x31\x34\x35\x38\x22\x2c\x0a\x22\x21\x2e\x09\x63\x20\x23\ -\x33\x32\x32\x34\x35\x46\x22\x2c\x0a\x22\x7e\x2e\x09\x63\x20\x23\ -\x33\x34\x32\x36\x36\x30\x22\x2c\x0a\x22\x7b\x2e\x09\x63\x20\x23\ -\x32\x44\x32\x30\x35\x43\x22\x2c\x0a\x22\x5d\x2e\x09\x63\x20\x23\ -\x32\x32\x31\x36\x35\x41\x22\x2c\x0a\x22\x5e\x2e\x09\x63\x20\x23\ -\x32\x36\x31\x39\x35\x41\x22\x2c\x0a\x22\x2f\x2e\x09\x63\x20\x23\ -\x33\x34\x32\x36\x36\x31\x22\x2c\x0a\x22\x28\x2e\x09\x63\x20\x23\ -\x32\x39\x31\x43\x35\x43\x22\x2c\x0a\x22\x5f\x2e\x09\x63\x20\x23\ -\x33\x36\x32\x39\x36\x31\x22\x2c\x0a\x22\x3a\x2e\x09\x63\x20\x23\ -\x33\x37\x32\x41\x36\x32\x22\x2c\x0a\x22\x3c\x2e\x09\x63\x20\x23\ -\x33\x34\x32\x38\x36\x32\x22\x2c\x0a\x22\x5b\x2e\x09\x63\x20\x23\ -\x32\x44\x32\x32\x35\x46\x22\x2c\x0a\x22\x7d\x2e\x09\x63\x20\x23\ -\x32\x35\x31\x39\x35\x42\x22\x2c\x0a\x22\x7c\x2e\x09\x63\x20\x23\ -\x32\x31\x31\x35\x35\x41\x22\x2c\x0a\x22\x31\x2e\x09\x63\x20\x23\ -\x35\x41\x35\x30\x38\x31\x22\x2c\x0a\x22\x32\x2e\x09\x63\x20\x23\ -\x43\x36\x43\x33\x44\x33\x22\x2c\x0a\x22\x33\x2e\x09\x63\x20\x23\ -\x46\x44\x46\x44\x46\x44\x22\x2c\x0a\x22\x34\x2e\x09\x63\x20\x23\ -\x37\x34\x39\x38\x42\x33\x22\x2c\x0a\x22\x35\x2e\x09\x63\x20\x23\ -\x35\x37\x38\x33\x41\x33\x22\x2c\x0a\x22\x36\x2e\x09\x63\x20\x23\ -\x46\x35\x46\x37\x46\x38\x22\x2c\x0a\x22\x37\x2e\x09\x63\x20\x23\ -\x37\x34\x36\x41\x38\x45\x22\x2c\x0a\x22\x38\x2e\x09\x63\x20\x23\ -\x33\x43\x32\x45\x36\x35\x22\x2c\x0a\x22\x39\x2e\x09\x63\x20\x23\ -\x32\x44\x31\x46\x35\x44\x22\x2c\x0a\x22\x30\x2e\x09\x63\x20\x23\ -\x32\x33\x31\x35\x35\x38\x22\x2c\x0a\x22\x61\x2e\x09\x63\x20\x23\ -\x31\x45\x31\x33\x35\x36\x22\x2c\x0a\x22\x62\x2e\x09\x63\x20\x23\ -\x32\x43\x31\x46\x35\x44\x22\x2c\x0a\x22\x63\x2e\x09\x63\x20\x23\ -\x33\x34\x32\x37\x36\x30\x22\x2c\x0a\x22\x64\x2e\x09\x63\x20\x23\ -\x33\x30\x32\x32\x35\x45\x22\x2c\x0a\x22\x65\x2e\x09\x63\x20\x23\ -\x33\x38\x32\x42\x36\x32\x22\x2c\x0a\x22\x66\x2e\x09\x63\x20\x23\ -\x32\x44\x32\x34\x35\x46\x22\x2c\x0a\x22\x67\x2e\x09\x63\x20\x23\ -\x32\x34\x31\x41\x35\x42\x22\x2c\x0a\x22\x68\x2e\x09\x63\x20\x23\ -\x32\x33\x31\x36\x35\x41\x22\x2c\x0a\x22\x69\x2e\x09\x63\x20\x23\ -\x35\x37\x34\x45\x38\x31\x22\x2c\x0a\x22\x6a\x2e\x09\x63\x20\x23\ -\x39\x41\x41\x34\x42\x43\x22\x2c\x0a\x22\x6b\x2e\x09\x63\x20\x23\ -\x32\x44\x36\x35\x38\x45\x22\x2c\x0a\x22\x6c\x2e\x09\x63\x20\x23\ -\x39\x46\x42\x38\x43\x39\x22\x2c\x0a\x22\x6d\x2e\x09\x63\x20\x23\ -\x37\x37\x36\x45\x39\x35\x22\x2c\x0a\x22\x6e\x2e\x09\x63\x20\x23\ -\x33\x42\x32\x42\x36\x33\x22\x2c\x0a\x22\x6f\x2e\x09\x63\x20\x23\ -\x32\x41\x31\x44\x35\x43\x22\x2c\x0a\x22\x70\x2e\x09\x63\x20\x23\ -\x32\x33\x31\x36\x35\x42\x22\x2c\x0a\x22\x71\x2e\x09\x63\x20\x23\ -\x32\x31\x31\x35\x35\x38\x22\x2c\x0a\x22\x72\x2e\x09\x63\x20\x23\ -\x33\x38\x32\x41\x36\x32\x22\x2c\x0a\x22\x73\x2e\x09\x63\x20\x23\ -\x33\x35\x32\x41\x36\x33\x22\x2c\x0a\x22\x74\x2e\x09\x63\x20\x23\ -\x32\x35\x31\x42\x35\x43\x22\x2c\x0a\x22\x75\x2e\x09\x63\x20\x23\ -\x32\x30\x31\x34\x35\x37\x22\x2c\x0a\x22\x76\x2e\x09\x63\x20\x23\ -\x32\x38\x34\x38\x37\x42\x22\x2c\x0a\x22\x77\x2e\x09\x63\x20\x23\ -\x34\x36\x37\x37\x39\x41\x22\x2c\x0a\x22\x78\x2e\x09\x63\x20\x23\ -\x45\x39\x45\x45\x46\x31\x22\x2c\x0a\x22\x79\x2e\x09\x63\x20\x23\ -\x43\x38\x44\x36\x44\x46\x22\x2c\x0a\x22\x7a\x2e\x09\x63\x20\x23\ -\x38\x42\x38\x33\x41\x32\x22\x2c\x0a\x22\x41\x2e\x09\x63\x20\x23\ -\x32\x42\x31\x45\x35\x45\x22\x2c\x0a\x22\x42\x2e\x09\x63\x20\x23\ -\x32\x31\x31\x34\x35\x38\x22\x2c\x0a\x22\x43\x2e\x09\x63\x20\x23\ -\x32\x41\x32\x30\x35\x45\x22\x2c\x0a\x22\x44\x2e\x09\x63\x20\x23\ -\x32\x36\x31\x43\x35\x43\x22\x2c\x0a\x22\x45\x2e\x09\x63\x20\x23\ -\x31\x42\x32\x33\x36\x31\x22\x2c\x0a\x22\x46\x2e\x09\x63\x20\x23\ -\x30\x43\x34\x34\x37\x37\x22\x2c\x0a\x22\x47\x2e\x09\x63\x20\x23\ -\x35\x30\x36\x35\x38\x46\x22\x2c\x0a\x22\x48\x2e\x09\x63\x20\x23\ -\x45\x42\x45\x41\x45\x46\x22\x2c\x0a\x22\x49\x2e\x09\x63\x20\x23\ -\x44\x35\x44\x46\x45\x35\x22\x2c\x0a\x22\x4a\x2e\x09\x63\x20\x23\ -\x37\x46\x41\x31\x42\x38\x22\x2c\x0a\x22\x4b\x2e\x09\x63\x20\x23\ -\x38\x32\x41\x34\x42\x39\x22\x2c\x0a\x22\x4c\x2e\x09\x63\x20\x23\ -\x41\x45\x41\x39\x42\x45\x22\x2c\x0a\x22\x4d\x2e\x09\x63\x20\x23\ -\x32\x46\x32\x31\x35\x44\x22\x2c\x0a\x22\x4e\x2e\x09\x63\x20\x23\ -\x32\x34\x31\x38\x35\x41\x22\x2c\x0a\x22\x4f\x2e\x09\x63\x20\x23\ -\x32\x31\x31\x36\x35\x41\x22\x2c\x0a\x22\x50\x2e\x09\x63\x20\x23\ -\x32\x30\x31\x37\x35\x41\x22\x2c\x0a\x22\x51\x2e\x09\x63\x20\x23\ -\x31\x31\x33\x37\x36\x46\x22\x2c\x0a\x22\x52\x2e\x09\x63\x20\x23\ -\x31\x30\x33\x37\x37\x30\x22\x2c\x0a\x22\x53\x2e\x09\x63\x20\x23\ -\x32\x30\x31\x37\x35\x42\x22\x2c\x0a\x22\x54\x2e\x09\x63\x20\x23\ -\x39\x30\x38\x41\x41\x41\x22\x2c\x0a\x22\x55\x2e\x09\x63\x20\x23\ -\x43\x45\x44\x41\x45\x32\x22\x2c\x0a\x22\x56\x2e\x09\x63\x20\x23\ -\x39\x44\x42\x36\x43\x37\x22\x2c\x0a\x22\x57\x2e\x09\x63\x20\x23\ -\x38\x46\x41\x43\x43\x30\x22\x2c\x0a\x22\x58\x2e\x09\x63\x20\x23\ -\x42\x46\x43\x45\x44\x39\x22\x2c\x0a\x22\x59\x2e\x09\x63\x20\x23\ -\x43\x43\x44\x39\x45\x31\x22\x2c\x0a\x22\x5a\x2e\x09\x63\x20\x23\ -\x36\x33\x35\x38\x38\x33\x22\x2c\x0a\x22\x60\x2e\x09\x63\x20\x23\ -\x33\x35\x32\x36\x36\x31\x22\x2c\x0a\x22\x20\x2b\x09\x63\x20\x23\ -\x33\x34\x32\x35\x36\x31\x22\x2c\x0a\x22\x2e\x2b\x09\x63\x20\x23\ -\x32\x43\x31\x45\x35\x44\x22\x2c\x0a\x22\x2b\x2b\x09\x63\x20\x23\ -\x32\x35\x31\x41\x35\x43\x22\x2c\x0a\x22\x40\x2b\x09\x63\x20\x23\ -\x32\x33\x31\x38\x35\x42\x22\x2c\x0a\x22\x23\x2b\x09\x63\x20\x23\ -\x32\x30\x31\x34\x35\x39\x22\x2c\x0a\x22\x24\x2b\x09\x63\x20\x23\ -\x31\x38\x32\x43\x36\x38\x22\x2c\x0a\x22\x25\x2b\x09\x63\x20\x23\ -\x30\x43\x34\x34\x37\x39\x22\x2c\x0a\x22\x26\x2b\x09\x63\x20\x23\ -\x31\x41\x32\x34\x36\x33\x22\x2c\x0a\x22\x2a\x2b\x09\x63\x20\x23\ -\x33\x39\x32\x46\x36\x39\x22\x2c\x0a\x22\x3d\x2b\x09\x63\x20\x23\ -\x41\x32\x41\x38\x42\x45\x22\x2c\x0a\x22\x2d\x2b\x09\x63\x20\x23\ -\x38\x44\x41\x42\x42\x46\x22\x2c\x0a\x22\x3b\x2b\x09\x63\x20\x23\ -\x41\x39\x42\x46\x43\x45\x22\x2c\x0a\x22\x3e\x2b\x09\x63\x20\x23\ -\x39\x37\x42\x31\x43\x33\x22\x2c\x0a\x22\x2c\x2b\x09\x63\x20\x23\ -\x39\x39\x39\x32\x41\x45\x22\x2c\x0a\x22\x27\x2b\x09\x63\x20\x23\ -\x33\x37\x32\x38\x36\x31\x22\x2c\x0a\x22\x29\x2b\x09\x63\x20\x23\ -\x33\x36\x32\x38\x36\x32\x22\x2c\x0a\x22\x21\x2b\x09\x63\x20\x23\ -\x32\x37\x31\x42\x35\x42\x22\x2c\x0a\x22\x7e\x2b\x09\x63\x20\x23\ -\x32\x35\x31\x39\x35\x41\x22\x2c\x0a\x22\x7b\x2b\x09\x63\x20\x23\ -\x32\x30\x31\x35\x35\x38\x22\x2c\x0a\x22\x5d\x2b\x09\x63\x20\x23\ -\x32\x39\x31\x44\x35\x44\x22\x2c\x0a\x22\x5e\x2b\x09\x63\x20\x23\ -\x32\x45\x32\x32\x35\x46\x22\x2c\x0a\x22\x2f\x2b\x09\x63\x20\x23\ -\x33\x30\x32\x34\x35\x46\x22\x2c\x0a\x22\x28\x2b\x09\x63\x20\x23\ -\x33\x33\x32\x37\x36\x32\x22\x2c\x0a\x22\x5f\x2b\x09\x63\x20\x23\ -\x33\x34\x32\x38\x36\x31\x22\x2c\x0a\x22\x3a\x2b\x09\x63\x20\x23\ -\x32\x46\x32\x33\x35\x46\x22\x2c\x0a\x22\x3c\x2b\x09\x63\x20\x23\ -\x32\x34\x31\x38\x35\x43\x22\x2c\x0a\x22\x5b\x2b\x09\x63\x20\x23\ -\x31\x46\x31\x32\x35\x36\x22\x2c\x0a\x22\x7d\x2b\x09\x63\x20\x23\ -\x31\x45\x31\x32\x35\x36\x22\x2c\x0a\x22\x7c\x2b\x09\x63\x20\x23\ -\x31\x42\x31\x46\x35\x46\x22\x2c\x0a\x22\x31\x2b\x09\x63\x20\x23\ -\x30\x46\x34\x33\x37\x37\x22\x2c\x0a\x22\x32\x2b\x09\x63\x20\x23\ -\x31\x35\x33\x31\x36\x43\x22\x2c\x0a\x22\x33\x2b\x09\x63\x20\x23\ -\x37\x37\x36\x46\x39\x37\x22\x2c\x0a\x22\x34\x2b\x09\x63\x20\x23\ -\x43\x45\x44\x39\x45\x31\x22\x2c\x0a\x22\x35\x2b\x09\x63\x20\x23\ -\x36\x44\x39\x34\x41\x45\x22\x2c\x0a\x22\x36\x2b\x09\x63\x20\x23\ -\x34\x32\x37\x34\x39\x38\x22\x2c\x0a\x22\x37\x2b\x09\x63\x20\x23\ -\x34\x45\x37\x44\x39\x44\x22\x2c\x0a\x22\x38\x2b\x09\x63\x20\x23\ -\x43\x31\x44\x30\x44\x39\x22\x2c\x0a\x22\x39\x2b\x09\x63\x20\x23\ -\x35\x34\x34\x39\x37\x41\x22\x2c\x0a\x22\x30\x2b\x09\x63\x20\x23\ -\x33\x35\x32\x38\x36\x31\x22\x2c\x0a\x22\x61\x2b\x09\x63\x20\x23\ -\x33\x33\x32\x36\x36\x31\x22\x2c\x0a\x22\x62\x2b\x09\x63\x20\x23\ -\x33\x37\x32\x39\x36\x32\x22\x2c\x0a\x22\x63\x2b\x09\x63\x20\x23\ -\x32\x33\x31\x37\x35\x41\x22\x2c\x0a\x22\x64\x2b\x09\x63\x20\x23\ -\x32\x45\x32\x31\x35\x45\x22\x2c\x0a\x22\x65\x2b\x09\x63\x20\x23\ -\x32\x37\x31\x45\x35\x45\x22\x2c\x0a\x22\x66\x2b\x09\x63\x20\x23\ -\x33\x35\x32\x37\x36\x31\x22\x2c\x0a\x22\x67\x2b\x09\x63\x20\x23\ -\x32\x42\x31\x46\x35\x44\x22\x2c\x0a\x22\x68\x2b\x09\x63\x20\x23\ -\x32\x33\x31\x37\x35\x38\x22\x2c\x0a\x22\x69\x2b\x09\x63\x20\x23\ -\x31\x46\x31\x36\x35\x39\x22\x2c\x0a\x22\x6a\x2b\x09\x63\x20\x23\ -\x31\x32\x33\x36\x36\x46\x22\x2c\x0a\x22\x6b\x2b\x09\x63\x20\x23\ -\x31\x30\x33\x43\x37\x33\x22\x2c\x0a\x22\x6c\x2b\x09\x63\x20\x23\ -\x32\x30\x31\x42\x35\x44\x22\x2c\x0a\x22\x6d\x2b\x09\x63\x20\x23\ -\x33\x35\x32\x39\x36\x37\x22\x2c\x0a\x22\x6e\x2b\x09\x63\x20\x23\ -\x43\x35\x43\x33\x44\x31\x22\x2c\x0a\x22\x6f\x2b\x09\x63\x20\x23\ -\x44\x39\x45\x32\x45\x37\x22\x2c\x0a\x22\x70\x2b\x09\x63\x20\x23\ -\x37\x46\x41\x30\x42\x38\x22\x2c\x0a\x22\x71\x2b\x09\x63\x20\x23\ -\x33\x46\x37\x30\x39\x34\x22\x2c\x0a\x22\x72\x2b\x09\x63\x20\x23\ -\x39\x43\x42\x35\x43\x36\x22\x2c\x0a\x22\x73\x2b\x09\x63\x20\x23\ -\x41\x42\x41\x35\x42\x42\x22\x2c\x0a\x22\x74\x2b\x09\x63\x20\x23\ -\x33\x32\x32\x33\x35\x46\x22\x2c\x0a\x22\x75\x2b\x09\x63\x20\x23\ -\x33\x34\x32\x37\x36\x31\x22\x2c\x0a\x22\x76\x2b\x09\x63\x20\x23\ -\x32\x34\x31\x38\x35\x42\x22\x2c\x0a\x22\x77\x2b\x09\x63\x20\x23\ -\x32\x32\x31\x37\x35\x42\x22\x2c\x0a\x22\x78\x2b\x09\x63\x20\x23\ -\x32\x41\x31\x45\x35\x43\x22\x2c\x0a\x22\x79\x2b\x09\x63\x20\x23\ -\x35\x45\x35\x35\x38\x33\x22\x2c\x0a\x22\x7a\x2b\x09\x63\x20\x23\ -\x38\x34\x37\x44\x39\x45\x22\x2c\x0a\x22\x41\x2b\x09\x63\x20\x23\ -\x35\x39\x34\x45\x37\x43\x22\x2c\x0a\x22\x42\x2b\x09\x63\x20\x23\ -\x33\x35\x32\x38\x36\x32\x22\x2c\x0a\x22\x43\x2b\x09\x63\x20\x23\ -\x33\x32\x32\x35\x36\x31\x22\x2c\x0a\x22\x44\x2b\x09\x63\x20\x23\ -\x33\x30\x32\x33\x36\x30\x22\x2c\x0a\x22\x45\x2b\x09\x63\x20\x23\ -\x33\x35\x32\x39\x36\x34\x22\x2c\x0a\x22\x46\x2b\x09\x63\x20\x23\ -\x31\x41\x33\x31\x36\x42\x22\x2c\x0a\x22\x47\x2b\x09\x63\x20\x23\ -\x31\x30\x34\x37\x37\x41\x22\x2c\x0a\x22\x48\x2b\x09\x63\x20\x23\ -\x32\x30\x32\x41\x36\x36\x22\x2c\x0a\x22\x49\x2b\x09\x63\x20\x23\ -\x31\x46\x31\x32\x35\x37\x22\x2c\x0a\x22\x4a\x2b\x09\x63\x20\x23\ -\x32\x34\x31\x37\x35\x42\x22\x2c\x0a\x22\x4b\x2b\x09\x63\x20\x23\ -\x32\x34\x31\x37\x35\x43\x22\x2c\x0a\x22\x4c\x2b\x09\x63\x20\x23\ -\x38\x34\x37\x45\x41\x31\x22\x2c\x0a\x22\x4d\x2b\x09\x63\x20\x23\ -\x36\x39\x38\x46\x41\x41\x22\x2c\x0a\x22\x4e\x2b\x09\x63\x20\x23\ -\x41\x33\x42\x41\x43\x42\x22\x2c\x0a\x22\x4f\x2b\x09\x63\x20\x23\ -\x44\x31\x44\x44\x45\x34\x22\x2c\x0a\x22\x50\x2b\x09\x63\x20\x23\ -\x42\x36\x43\x39\x44\x35\x22\x2c\x0a\x22\x51\x2b\x09\x63\x20\x23\ -\x37\x39\x36\x46\x39\x33\x22\x2c\x0a\x22\x52\x2b\x09\x63\x20\x23\ -\x34\x30\x33\x33\x36\x41\x22\x2c\x0a\x22\x53\x2b\x09\x63\x20\x23\ -\x39\x39\x39\x33\x41\x45\x22\x2c\x0a\x22\x54\x2b\x09\x63\x20\x23\ -\x41\x44\x41\x39\x42\x45\x22\x2c\x0a\x22\x55\x2b\x09\x63\x20\x23\ -\x41\x41\x41\x36\x42\x44\x22\x2c\x0a\x22\x56\x2b\x09\x63\x20\x23\ -\x41\x39\x41\x35\x42\x44\x22\x2c\x0a\x22\x57\x2b\x09\x63\x20\x23\ -\x41\x31\x39\x43\x42\x37\x22\x2c\x0a\x22\x58\x2b\x09\x63\x20\x23\ -\x38\x43\x38\x37\x41\x38\x22\x2c\x0a\x22\x59\x2b\x09\x63\x20\x23\ -\x36\x31\x35\x39\x38\x38\x22\x2c\x0a\x22\x5a\x2b\x09\x63\x20\x23\ -\x32\x39\x31\x45\x35\x46\x22\x2c\x0a\x22\x60\x2b\x09\x63\x20\x23\ -\x32\x39\x31\x44\x35\x42\x22\x2c\x0a\x22\x20\x40\x09\x63\x20\x23\ -\x33\x35\x32\x41\x36\x37\x22\x2c\x0a\x22\x2e\x40\x09\x63\x20\x23\ -\x34\x39\x33\x46\x37\x36\x22\x2c\x0a\x22\x2b\x40\x09\x63\x20\x23\ -\x35\x33\x34\x39\x37\x45\x22\x2c\x0a\x22\x40\x40\x09\x63\x20\x23\ -\x34\x42\x34\x30\x37\x35\x22\x2c\x0a\x22\x23\x40\x09\x63\x20\x23\ -\x36\x30\x35\x36\x38\x32\x22\x2c\x0a\x22\x24\x40\x09\x63\x20\x23\ -\x44\x44\x44\x43\x45\x32\x22\x2c\x0a\x22\x25\x40\x09\x63\x20\x23\ -\x46\x36\x46\x35\x46\x36\x22\x2c\x0a\x22\x26\x40\x09\x63\x20\x23\ -\x38\x31\x37\x42\x39\x46\x22\x2c\x0a\x22\x2a\x40\x09\x63\x20\x23\ -\x32\x41\x31\x44\x35\x45\x22\x2c\x0a\x22\x3d\x40\x09\x63\x20\x23\ -\x36\x45\x36\x34\x38\x43\x22\x2c\x0a\x22\x2d\x40\x09\x63\x20\x23\ -\x41\x38\x41\x32\x42\x38\x22\x2c\x0a\x22\x3b\x40\x09\x63\x20\x23\ -\x38\x34\x39\x33\x41\x43\x22\x2c\x0a\x22\x3e\x40\x09\x63\x20\x23\ -\x31\x46\x35\x37\x38\x33\x22\x2c\x0a\x22\x2c\x40\x09\x63\x20\x23\ -\x37\x30\x38\x44\x41\x39\x22\x2c\x0a\x22\x27\x40\x09\x63\x20\x23\ -\x38\x31\x37\x39\x39\x42\x22\x2c\x0a\x22\x29\x40\x09\x63\x20\x23\ -\x33\x42\x32\x46\x36\x37\x22\x2c\x0a\x22\x21\x40\x09\x63\x20\x23\ -\x34\x41\x34\x31\x37\x36\x22\x2c\x0a\x22\x7e\x40\x09\x63\x20\x23\ -\x44\x43\x44\x46\x45\x35\x22\x2c\x0a\x22\x7b\x40\x09\x63\x20\x23\ -\x41\x37\x42\x43\x43\x42\x22\x2c\x0a\x22\x5d\x40\x09\x63\x20\x23\ -\x44\x33\x44\x45\x45\x33\x22\x2c\x0a\x22\x5e\x40\x09\x63\x20\x23\ -\x43\x33\x44\x32\x44\x42\x22\x2c\x0a\x22\x2f\x40\x09\x63\x20\x23\ -\x38\x33\x41\x33\x42\x38\x22\x2c\x0a\x22\x28\x40\x09\x63\x20\x23\ -\x35\x31\x34\x34\x37\x34\x22\x2c\x0a\x22\x5f\x40\x09\x63\x20\x23\ -\x33\x36\x32\x38\x36\x31\x22\x2c\x0a\x22\x3a\x40\x09\x63\x20\x23\ -\x34\x35\x33\x38\x36\x45\x22\x2c\x0a\x22\x3c\x40\x09\x63\x20\x23\ -\x44\x46\x44\x44\x45\x35\x22\x2c\x0a\x22\x5b\x40\x09\x63\x20\x23\ -\x46\x45\x46\x46\x46\x45\x22\x2c\x0a\x22\x7d\x40\x09\x63\x20\x23\ -\x46\x36\x46\x35\x46\x38\x22\x2c\x0a\x22\x7c\x40\x09\x63\x20\x23\ -\x33\x44\x33\x33\x36\x43\x22\x2c\x0a\x22\x31\x40\x09\x63\x20\x23\ -\x32\x36\x31\x41\x35\x42\x22\x2c\x0a\x22\x32\x40\x09\x63\x20\x23\ -\x33\x35\x32\x38\x36\x30\x22\x2c\x0a\x22\x33\x40\x09\x63\x20\x23\ -\x33\x33\x32\x39\x36\x31\x22\x2c\x0a\x22\x34\x40\x09\x63\x20\x23\ -\x38\x34\x38\x30\x41\x32\x22\x2c\x0a\x22\x35\x40\x09\x63\x20\x23\ -\x43\x44\x43\x43\x44\x38\x22\x2c\x0a\x22\x36\x40\x09\x63\x20\x23\ -\x45\x42\x45\x41\x45\x45\x22\x2c\x0a\x22\x37\x40\x09\x63\x20\x23\ -\x45\x44\x45\x43\x46\x30\x22\x2c\x0a\x22\x38\x40\x09\x63\x20\x23\ -\x45\x41\x45\x38\x45\x44\x22\x2c\x0a\x22\x39\x40\x09\x63\x20\x23\ -\x44\x44\x44\x42\x45\x32\x22\x2c\x0a\x22\x30\x40\x09\x63\x20\x23\ -\x44\x46\x44\x44\x45\x34\x22\x2c\x0a\x22\x61\x40\x09\x63\x20\x23\ -\x37\x45\x37\x34\x39\x38\x22\x2c\x0a\x22\x62\x40\x09\x63\x20\x23\ -\x34\x38\x33\x43\x37\x30\x22\x2c\x0a\x22\x63\x40\x09\x63\x20\x23\ -\x37\x34\x36\x43\x39\x33\x22\x2c\x0a\x22\x64\x40\x09\x63\x20\x23\ -\x45\x32\x45\x30\x45\x36\x22\x2c\x0a\x22\x65\x40\x09\x63\x20\x23\ -\x44\x38\x45\x32\x45\x38\x22\x2c\x0a\x22\x66\x40\x09\x63\x20\x23\ -\x34\x44\x37\x45\x41\x30\x22\x2c\x0a\x22\x67\x40\x09\x63\x20\x23\ -\x36\x38\x39\x30\x41\x43\x22\x2c\x0a\x22\x68\x40\x09\x63\x20\x23\ -\x46\x33\x46\x36\x46\x36\x22\x2c\x0a\x22\x69\x40\x09\x63\x20\x23\ -\x46\x42\x46\x42\x46\x42\x22\x2c\x0a\x22\x6a\x40\x09\x63\x20\x23\ -\x41\x45\x41\x38\x42\x44\x22\x2c\x0a\x22\x6b\x40\x09\x63\x20\x23\ -\x33\x45\x33\x32\x36\x37\x22\x2c\x0a\x22\x6c\x40\x09\x63\x20\x23\ -\x32\x43\x32\x30\x36\x31\x22\x2c\x0a\x22\x6d\x40\x09\x63\x20\x23\ -\x43\x33\x43\x30\x44\x30\x22\x2c\x0a\x22\x6e\x40\x09\x63\x20\x23\ -\x38\x46\x41\x44\x43\x30\x22\x2c\x0a\x22\x6f\x40\x09\x63\x20\x23\ -\x37\x32\x39\x38\x42\x31\x22\x2c\x0a\x22\x70\x40\x09\x63\x20\x23\ -\x36\x38\x38\x46\x41\x39\x22\x2c\x0a\x22\x71\x40\x09\x63\x20\x23\ -\x37\x46\x39\x46\x42\x36\x22\x2c\x0a\x22\x72\x40\x09\x63\x20\x23\ -\x42\x46\x42\x43\x43\x42\x22\x2c\x0a\x22\x73\x40\x09\x63\x20\x23\ -\x34\x30\x33\x32\x36\x37\x22\x2c\x0a\x22\x74\x40\x09\x63\x20\x23\ -\x34\x34\x33\x37\x36\x44\x22\x2c\x0a\x22\x75\x40\x09\x63\x20\x23\ -\x45\x30\x44\x44\x45\x35\x22\x2c\x0a\x22\x76\x40\x09\x63\x20\x23\ -\x46\x46\x46\x46\x46\x46\x22\x2c\x0a\x22\x77\x40\x09\x63\x20\x23\ -\x45\x41\x45\x39\x45\x44\x22\x2c\x0a\x22\x78\x40\x09\x63\x20\x23\ -\x41\x31\x39\x43\x42\x35\x22\x2c\x0a\x22\x79\x40\x09\x63\x20\x23\ -\x41\x38\x41\x33\x42\x42\x22\x2c\x0a\x22\x7a\x40\x09\x63\x20\x23\ -\x44\x35\x44\x32\x44\x44\x22\x2c\x0a\x22\x41\x40\x09\x63\x20\x23\ -\x32\x41\x31\x46\x35\x46\x22\x2c\x0a\x22\x42\x40\x09\x63\x20\x23\ -\x32\x44\x32\x34\x36\x30\x22\x2c\x0a\x22\x43\x40\x09\x63\x20\x23\ -\x37\x41\x37\x37\x39\x41\x22\x2c\x0a\x22\x44\x40\x09\x63\x20\x23\ -\x46\x32\x46\x34\x46\x37\x22\x2c\x0a\x22\x45\x40\x09\x63\x20\x23\ -\x41\x33\x39\x44\x42\x35\x22\x2c\x0a\x22\x46\x40\x09\x63\x20\x23\ -\x37\x36\x36\x45\x39\x35\x22\x2c\x0a\x22\x47\x40\x09\x63\x20\x23\ -\x45\x38\x45\x36\x45\x42\x22\x2c\x0a\x22\x48\x40\x09\x63\x20\x23\ -\x36\x32\x35\x38\x38\x34\x22\x2c\x0a\x22\x49\x40\x09\x63\x20\x23\ -\x34\x36\x33\x39\x36\x45\x22\x2c\x0a\x22\x4a\x40\x09\x63\x20\x23\ -\x43\x46\x43\x43\x44\x38\x22\x2c\x0a\x22\x4b\x40\x09\x63\x20\x23\ -\x36\x42\x39\x32\x41\x45\x22\x2c\x0a\x22\x4c\x40\x09\x63\x20\x23\ -\x31\x36\x34\x34\x37\x38\x22\x2c\x0a\x22\x4d\x40\x09\x63\x20\x23\ -\x36\x30\x36\x33\x38\x45\x22\x2c\x0a\x22\x4e\x40\x09\x63\x20\x23\ -\x42\x34\x42\x30\x43\x34\x22\x2c\x0a\x22\x4f\x40\x09\x63\x20\x23\ -\x46\x38\x46\x37\x46\x37\x22\x2c\x0a\x22\x50\x40\x09\x63\x20\x23\ -\x37\x36\x36\x43\x39\x31\x22\x2c\x0a\x22\x51\x40\x09\x63\x20\x23\ -\x33\x32\x32\x35\x35\x46\x22\x2c\x0a\x22\x52\x40\x09\x63\x20\x23\ -\x39\x42\x39\x35\x42\x32\x22\x2c\x0a\x22\x53\x40\x09\x63\x20\x23\ -\x43\x35\x44\x33\x44\x43\x22\x2c\x0a\x22\x54\x40\x09\x63\x20\x23\ -\x39\x45\x42\x36\x43\x36\x22\x2c\x0a\x22\x55\x40\x09\x63\x20\x23\ -\x44\x44\x45\x34\x45\x39\x22\x2c\x0a\x22\x56\x40\x09\x63\x20\x23\ -\x46\x31\x46\x34\x46\x35\x22\x2c\x0a\x22\x57\x40\x09\x63\x20\x23\ -\x46\x32\x46\x34\x46\x36\x22\x2c\x0a\x22\x58\x40\x09\x63\x20\x23\ -\x39\x44\x39\x37\x42\x31\x22\x2c\x0a\x22\x59\x40\x09\x63\x20\x23\ -\x33\x38\x32\x41\x36\x31\x22\x2c\x0a\x22\x5a\x40\x09\x63\x20\x23\ -\x34\x31\x33\x35\x36\x44\x22\x2c\x0a\x22\x60\x40\x09\x63\x20\x23\ -\x44\x46\x44\x44\x45\x36\x22\x2c\x0a\x22\x20\x23\x09\x63\x20\x23\ -\x43\x45\x43\x43\x44\x39\x22\x2c\x0a\x22\x2e\x23\x09\x63\x20\x23\ -\x32\x44\x32\x32\x36\x32\x22\x2c\x0a\x22\x2b\x23\x09\x63\x20\x23\ -\x34\x44\x34\x33\x37\x38\x22\x2c\x0a\x22\x40\x23\x09\x63\x20\x23\ -\x43\x34\x43\x31\x44\x31\x22\x2c\x0a\x22\x23\x23\x09\x63\x20\x23\ -\x46\x35\x46\x35\x46\x37\x22\x2c\x0a\x22\x24\x23\x09\x63\x20\x23\ 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-\x34\x34\x33\x39\x37\x30\x22\x2c\x0a\x22\x5e\x23\x09\x63\x20\x23\ -\x38\x39\x38\x33\x41\x35\x22\x2c\x0a\x22\x2f\x23\x09\x63\x20\x23\ -\x37\x37\x36\x46\x39\x35\x22\x2c\x0a\x22\x28\x23\x09\x63\x20\x23\ -\x34\x38\x33\x43\x36\x46\x22\x2c\x0a\x22\x5f\x23\x09\x63\x20\x23\ -\x33\x38\x32\x42\x36\x33\x22\x2c\x0a\x22\x3a\x23\x09\x63\x20\x23\ -\x37\x39\x37\x31\x39\x38\x22\x2c\x0a\x22\x3c\x23\x09\x63\x20\x23\ -\x44\x30\x44\x42\x45\x32\x22\x2c\x0a\x22\x5b\x23\x09\x63\x20\x23\ -\x37\x32\x39\x35\x41\x46\x22\x2c\x0a\x22\x7d\x23\x09\x63\x20\x23\ -\x39\x31\x41\x43\x42\x46\x22\x2c\x0a\x22\x7c\x23\x09\x63\x20\x23\ -\x38\x37\x41\x35\x42\x41\x22\x2c\x0a\x22\x31\x23\x09\x63\x20\x23\ -\x42\x44\x43\x44\x44\x38\x22\x2c\x0a\x22\x32\x23\x09\x63\x20\x23\ -\x38\x31\x37\x41\x39\x45\x22\x2c\x0a\x22\x33\x23\x09\x63\x20\x23\ -\x33\x44\x33\x31\x36\x42\x22\x2c\x0a\x22\x34\x23\x09\x63\x20\x23\ -\x44\x45\x44\x43\x45\x35\x22\x2c\x0a\x22\x35\x23\x09\x63\x20\x23\ -\x43\x46\x43\x44\x44\x41\x22\x2c\x0a\x22\x36\x23\x09\x63\x20\x23\ -\x32\x44\x32\x33\x36\x32\x22\x2c\x0a\x22\x37\x23\x09\x63\x20\x23\ -\x37\x38\x37\x31\x39\x38\x22\x2c\x0a\x22\x38\x23\x09\x63\x20\x23\ -\x46\x42\x46\x41\x46\x41\x22\x2c\x0a\x22\x39\x23\x09\x63\x20\x23\ -\x39\x45\x39\x43\x42\x38\x22\x2c\x0a\x22\x30\x23\x09\x63\x20\x23\ -\x38\x35\x37\x45\x39\x46\x22\x2c\x0a\x22\x61\x23\x09\x63\x20\x23\ -\x46\x36\x46\x36\x46\x37\x22\x2c\x0a\x22\x62\x23\x09\x63\x20\x23\ -\x38\x45\x38\x37\x41\x35\x22\x2c\x0a\x22\x63\x23\x09\x63\x20\x23\ -\x35\x35\x34\x41\x37\x43\x22\x2c\x0a\x22\x64\x23\x09\x63\x20\x23\ -\x46\x38\x46\x37\x46\x38\x22\x2c\x0a\x22\x65\x23\x09\x63\x20\x23\ -\x37\x33\x36\x39\x38\x46\x22\x2c\x0a\x22\x66\x23\x09\x63\x20\x23\ -\x39\x31\x41\x42\x42\x46\x22\x2c\x0a\x22\x67\x23\x09\x63\x20\x23\ -\x32\x33\x35\x45\x38\x39\x22\x2c\x0a\x22\x68\x23\x09\x63\x20\x23\ -\x38\x46\x41\x38\x42\x44\x22\x2c\x0a\x22\x69\x23\x09\x63\x20\x23\ -\x41\x33\x39\x43\x42\x35\x22\x2c\x0a\x22\x6a\x23\x09\x63\x20\x23\ -\x37\x43\x37\x32\x39\x35\x22\x2c\x0a\x22\x6b\x23\x09\x63\x20\x23\ -\x34\x46\x34\x34\x37\x36\x22\x2c\x0a\x22\x6c\x23\x09\x63\x20\x23\ -\x32\x43\x32\x30\x35\x46\x22\x2c\x0a\x22\x6d\x23\x09\x63\x20\x23\ -\x35\x45\x35\x35\x38\x34\x22\x2c\x0a\x22\x6e\x23\x09\x63\x20\x23\ -\x45\x31\x45\x35\x45\x39\x22\x2c\x0a\x22\x6f\x23\x09\x63\x20\x23\ -\x39\x38\x42\x31\x43\x34\x22\x2c\x0a\x22\x70\x23\x09\x63\x20\x23\ -\x44\x43\x45\x34\x45\x39\x22\x2c\x0a\x22\x71\x23\x09\x63\x20\x23\ -\x44\x46\x45\x36\x45\x42\x22\x2c\x0a\x22\x72\x23\x09\x63\x20\x23\ -\x46\x38\x46\x39\x46\x41\x22\x2c\x0a\x22\x73\x23\x09\x63\x20\x23\ -\x36\x45\x36\x36\x39\x30\x22\x2c\x0a\x22\x74\x23\x09\x63\x20\x23\ -\x33\x38\x32\x41\x36\x33\x22\x2c\x0a\x22\x75\x23\x09\x63\x20\x23\ -\x33\x46\x33\x34\x36\x43\x22\x2c\x0a\x22\x76\x23\x09\x63\x20\x23\ -\x44\x43\x44\x42\x45\x34\x22\x2c\x0a\x22\x77\x23\x09\x63\x20\x23\ -\x44\x32\x43\x46\x44\x43\x22\x2c\x0a\x22\x78\x23\x09\x63\x20\x23\ -\x33\x31\x32\x36\x36\x34\x22\x2c\x0a\x22\x79\x23\x09\x63\x20\x23\ -\x34\x37\x33\x44\x37\x34\x22\x2c\x0a\x22\x7a\x23\x09\x63\x20\x23\ -\x45\x39\x45\x39\x45\x44\x22\x2c\x0a\x22\x41\x23\x09\x63\x20\x23\ -\x43\x32\x43\x30\x44\x30\x22\x2c\x0a\x22\x42\x23\x09\x63\x20\x23\ -\x32\x44\x32\x31\x36\x31\x22\x2c\x0a\x22\x43\x23\x09\x63\x20\x23\ -\x33\x43\x32\x46\x36\x36\x22\x2c\x0a\x22\x44\x23\x09\x63\x20\x23\ -\x42\x42\x42\x36\x43\x37\x22\x2c\x0a\x22\x45\x23\x09\x63\x20\x23\ -\x46\x43\x46\x42\x46\x43\x22\x2c\x0a\x22\x46\x23\x09\x63\x20\x23\ -\x46\x33\x46\x32\x46\x35\x22\x2c\x0a\x22\x47\x23\x09\x63\x20\x23\ -\x45\x39\x45\x38\x45\x44\x22\x2c\x0a\x22\x48\x23\x09\x63\x20\x23\ -\x46\x38\x46\x38\x46\x39\x22\x2c\x0a\x22\x49\x23\x09\x63\x20\x23\ -\x45\x33\x45\x31\x45\x38\x22\x2c\x0a\x22\x4a\x23\x09\x63\x20\x23\ -\x39\x37\x39\x30\x41\x42\x22\x2c\x0a\x22\x4b\x23\x09\x63\x20\x23\ -\x33\x39\x32\x42\x36\x32\x22\x2c\x0a\x22\x4c\x23\x09\x63\x20\x23\ -\x32\x44\x33\x38\x36\x44\x22\x2c\x0a\x22\x4d\x23\x09\x63\x20\x23\ -\x32\x30\x35\x37\x38\x34\x22\x2c\x0a\x22\x4e\x23\x09\x63\x20\x23\ -\x38\x33\x41\x34\x42\x42\x22\x2c\x0a\x22\x4f\x23\x09\x63\x20\x23\ -\x46\x41\x46\x39\x46\x41\x22\x2c\x0a\x22\x50\x23\x09\x63\x20\x23\ -\x42\x34\x41\x46\x43\x34\x22\x2c\x0a\x22\x51\x23\x09\x63\x20\x23\ -\x36\x37\x35\x46\x38\x43\x22\x2c\x0a\x22\x52\x23\x09\x63\x20\x23\ -\x33\x37\x32\x41\x36\x31\x22\x2c\x0a\x22\x53\x23\x09\x63\x20\x23\ -\x35\x31\x34\x38\x37\x43\x22\x2c\x0a\x22\x54\x23\x09\x63\x20\x23\ -\x46\x30\x46\x30\x46\x32\x22\x2c\x0a\x22\x55\x23\x09\x63\x20\x23\ -\x41\x46\x43\x34\x44\x30\x22\x2c\x0a\x22\x56\x23\x09\x63\x20\x23\ -\x43\x32\x44\x32\x44\x42\x22\x2c\x0a\x22\x57\x23\x09\x63\x20\x23\ -\x38\x36\x41\x35\x42\x41\x22\x2c\x0a\x22\x58\x23\x09\x63\x20\x23\ -\x38\x45\x41\x42\x42\x46\x22\x2c\x0a\x22\x59\x23\x09\x63\x20\x23\ 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-\x34\x43\x34\x30\x37\x34\x22\x2c\x0a\x22\x3e\x24\x09\x63\x20\x23\ -\x33\x30\x32\x32\x35\x46\x22\x2c\x0a\x22\x2c\x24\x09\x63\x20\x23\ -\x33\x33\x32\x34\x36\x31\x22\x2c\x0a\x22\x27\x24\x09\x63\x20\x23\ -\x32\x41\x33\x31\x36\x38\x22\x2c\x0a\x22\x29\x24\x09\x63\x20\x23\ -\x31\x34\x34\x35\x37\x37\x22\x2c\x0a\x22\x21\x24\x09\x63\x20\x23\ -\x33\x35\x35\x36\x38\x34\x22\x2c\x0a\x22\x7e\x24\x09\x63\x20\x23\ -\x42\x43\x42\x39\x43\x41\x22\x2c\x0a\x22\x7b\x24\x09\x63\x20\x23\ -\x45\x31\x44\x46\x45\x36\x22\x2c\x0a\x22\x5d\x24\x09\x63\x20\x23\ -\x36\x41\x36\x32\x38\x43\x22\x2c\x0a\x22\x5e\x24\x09\x63\x20\x23\ -\x32\x38\x31\x42\x35\x44\x22\x2c\x0a\x22\x2f\x24\x09\x63\x20\x23\ -\x34\x37\x33\x45\x37\x33\x22\x2c\x0a\x22\x28\x24\x09\x63\x20\x23\ -\x45\x32\x45\x33\x45\x38\x22\x2c\x0a\x22\x5f\x24\x09\x63\x20\x23\ -\x39\x35\x42\x30\x43\x32\x22\x2c\x0a\x22\x3a\x24\x09\x63\x20\x23\ -\x38\x30\x41\x31\x42\x37\x22\x2c\x0a\x22\x3c\x24\x09\x63\x20\x23\ 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-\x45\x46\x45\x46\x46\x32\x22\x2c\x0a\x22\x7b\x25\x09\x63\x20\x23\ -\x37\x37\x37\x30\x39\x37\x22\x2c\x0a\x22\x5d\x25\x09\x63\x20\x23\ -\x32\x45\x32\x31\x36\x31\x22\x2c\x0a\x22\x5e\x25\x09\x63\x20\x23\ -\x36\x33\x35\x42\x38\x39\x22\x2c\x0a\x22\x2f\x25\x09\x63\x20\x23\ -\x45\x38\x45\x37\x45\x44\x22\x2c\x0a\x22\x28\x25\x09\x63\x20\x23\ -\x42\x35\x42\x31\x43\x35\x22\x2c\x0a\x22\x5f\x25\x09\x63\x20\x23\ -\x36\x37\x36\x30\x38\x42\x22\x2c\x0a\x22\x3a\x25\x09\x63\x20\x23\ -\x46\x39\x46\x39\x46\x39\x22\x2c\x0a\x22\x3c\x25\x09\x63\x20\x23\ -\x43\x41\x44\x37\x44\x46\x22\x2c\x0a\x22\x5b\x25\x09\x63\x20\x23\ -\x36\x30\x38\x41\x41\x37\x22\x2c\x0a\x22\x7d\x25\x09\x63\x20\x23\ -\x37\x41\x39\x44\x42\x35\x22\x2c\x0a\x22\x7c\x25\x09\x63\x20\x23\ -\x41\x37\x42\x45\x43\x43\x22\x2c\x0a\x22\x31\x25\x09\x63\x20\x23\ -\x41\x44\x41\x38\x42\x45\x22\x2c\x0a\x22\x32\x25\x09\x63\x20\x23\ -\x32\x38\x31\x43\x35\x44\x22\x2c\x0a\x22\x33\x25\x09\x63\x20\x23\ 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-\x32\x43\x35\x32\x38\x32\x22\x2c\x0a\x22\x68\x25\x09\x63\x20\x23\ -\x34\x35\x37\x38\x39\x43\x22\x2c\x0a\x22\x69\x25\x09\x63\x20\x23\ -\x42\x44\x43\x43\x44\x37\x22\x2c\x0a\x22\x6a\x25\x09\x63\x20\x23\ -\x36\x42\x36\x32\x38\x44\x22\x2c\x0a\x22\x6b\x25\x09\x63\x20\x23\ -\x36\x43\x36\x34\x38\x46\x22\x2c\x0a\x22\x6c\x25\x09\x63\x20\x23\ -\x43\x43\x43\x39\x44\x37\x22\x2c\x0a\x22\x6d\x25\x09\x63\x20\x23\ -\x45\x35\x45\x34\x45\x41\x22\x2c\x0a\x22\x6e\x25\x09\x63\x20\x23\ -\x37\x42\x37\x32\x39\x36\x22\x2c\x0a\x22\x6f\x25\x09\x63\x20\x23\ -\x33\x33\x32\x35\x35\x46\x22\x2c\x0a\x22\x70\x25\x09\x63\x20\x23\ -\x38\x37\x38\x31\x41\x33\x22\x2c\x0a\x22\x71\x25\x09\x63\x20\x23\ -\x46\x32\x46\x35\x46\x35\x22\x2c\x0a\x22\x72\x25\x09\x63\x20\x23\ -\x41\x46\x43\x32\x43\x46\x22\x2c\x0a\x22\x73\x25\x09\x63\x20\x23\ -\x45\x46\x46\x33\x46\x34\x22\x2c\x0a\x22\x74\x25\x09\x63\x20\x23\ -\x46\x33\x46\x36\x46\x37\x22\x2c\x0a\x22\x75\x25\x09\x63\x20\x23\ -\x44\x30\x43\x44\x44\x38\x22\x2c\x0a\x22\x76\x25\x09\x63\x20\x23\ -\x33\x42\x32\x46\x36\x39\x22\x2c\x0a\x22\x77\x25\x09\x63\x20\x23\ -\x32\x39\x31\x42\x35\x42\x22\x2c\x0a\x22\x78\x25\x09\x63\x20\x23\ -\x33\x44\x33\x31\x36\x41\x22\x2c\x0a\x22\x79\x25\x09\x63\x20\x23\ -\x46\x37\x46\x37\x46\x38\x22\x2c\x0a\x22\x7a\x25\x09\x63\x20\x23\ -\x45\x45\x45\x44\x46\x31\x22\x2c\x0a\x22\x41\x25\x09\x63\x20\x23\ -\x43\x32\x42\x46\x43\x44\x22\x2c\x0a\x22\x42\x25\x09\x63\x20\x23\ -\x37\x33\x36\x43\x39\x34\x22\x2c\x0a\x22\x43\x25\x09\x63\x20\x23\ -\x44\x45\x44\x43\x45\x33\x22\x2c\x0a\x22\x44\x25\x09\x63\x20\x23\ -\x44\x30\x43\x45\x44\x41\x22\x2c\x0a\x22\x45\x25\x09\x63\x20\x23\ -\x42\x33\x41\x46\x43\x34\x22\x2c\x0a\x22\x46\x25\x09\x63\x20\x23\ -\x39\x32\x39\x34\x41\x44\x22\x2c\x0a\x22\x47\x25\x09\x63\x20\x23\ -\x33\x31\x35\x36\x38\x32\x22\x2c\x0a\x22\x48\x25\x09\x63\x20\x23\ -\x34\x31\x37\x36\x39\x43\x22\x2c\x0a\x22\x49\x25\x09\x63\x20\x23\ -\x42\x43\x43\x46\x44\x41\x22\x2c\x0a\x22\x4a\x25\x09\x63\x20\x23\ -\x42\x39\x42\x36\x43\x38\x22\x2c\x0a\x22\x4b\x25\x09\x63\x20\x23\ -\x33\x39\x32\x45\x36\x41\x22\x2c\x0a\x22\x4c\x25\x09\x63\x20\x23\ -\x37\x39\x37\x32\x39\x38\x22\x2c\x0a\x22\x4d\x25\x09\x63\x20\x23\ -\x44\x30\x43\x45\x44\x39\x22\x2c\x0a\x22\x4e\x25\x09\x63\x20\x23\ -\x46\x41\x46\x41\x46\x41\x22\x2c\x0a\x22\x4f\x25\x09\x63\x20\x23\ -\x44\x42\x44\x39\x45\x31\x22\x2c\x0a\x22\x50\x25\x09\x63\x20\x23\ -\x38\x44\x38\x36\x41\x34\x22\x2c\x0a\x22\x51\x25\x09\x63\x20\x23\ -\x41\x44\x41\x39\x43\x30\x22\x2c\x0a\x22\x52\x25\x09\x63\x20\x23\ -\x44\x44\x45\x36\x45\x41\x22\x2c\x0a\x22\x53\x25\x09\x63\x20\x23\ -\x42\x32\x43\x36\x44\x32\x22\x2c\x0a\x22\x54\x25\x09\x63\x20\x23\ -\x38\x46\x41\x43\x42\x46\x22\x2c\x0a\x22\x55\x25\x09\x63\x20\x23\ -\x43\x37\x44\x36\x44\x45\x22\x2c\x0a\x22\x56\x25\x09\x63\x20\x23\ -\x35\x45\x35\x33\x38\x30\x22\x2c\x0a\x22\x57\x25\x09\x63\x20\x23\ -\x32\x46\x32\x33\x36\x30\x22\x2c\x0a\x22\x58\x25\x09\x63\x20\x23\ -\x32\x33\x31\x37\x35\x39\x22\x2c\x0a\x22\x59\x25\x09\x63\x20\x23\ -\x36\x32\x35\x39\x38\x34\x22\x2c\x0a\x22\x5a\x25\x09\x63\x20\x23\ -\x36\x39\x36\x31\x38\x41\x22\x2c\x0a\x22\x60\x25\x09\x63\x20\x23\ -\x35\x45\x35\x38\x38\x36\x22\x2c\x0a\x22\x20\x26\x09\x63\x20\x23\ -\x35\x41\x35\x32\x38\x34\x22\x2c\x0a\x22\x2e\x26\x09\x63\x20\x23\ -\x35\x41\x35\x31\x38\x33\x22\x2c\x0a\x22\x2b\x26\x09\x63\x20\x23\ -\x34\x44\x34\x33\x37\x39\x22\x2c\x0a\x22\x40\x26\x09\x63\x20\x23\ -\x33\x30\x32\x35\x36\x32\x22\x2c\x0a\x22\x23\x26\x09\x63\x20\x23\ -\x36\x35\x35\x43\x38\x39\x22\x2c\x0a\x22\x24\x26\x09\x63\x20\x23\ -\x41\x42\x41\x36\x42\x45\x22\x2c\x0a\x22\x25\x26\x09\x63\x20\x23\ -\x43\x45\x44\x34\x44\x45\x22\x2c\x0a\x22\x26\x26\x09\x63\x20\x23\ -\x36\x36\x38\x46\x41\x43\x22\x2c\x0a\x22\x2a\x26\x09\x63\x20\x23\ -\x32\x39\x35\x42\x38\x38\x22\x2c\x0a\x22\x3d\x26\x09\x63\x20\x23\ -\x38\x32\x39\x31\x41\x44\x22\x2c\x0a\x22\x2d\x26\x09\x63\x20\x23\ -\x39\x34\x38\x45\x41\x41\x22\x2c\x0a\x22\x3b\x26\x09\x63\x20\x23\ -\x34\x44\x34\x33\x37\x35\x22\x2c\x0a\x22\x3e\x26\x09\x63\x20\x23\ -\x33\x45\x33\x33\x36\x44\x22\x2c\x0a\x22\x2c\x26\x09\x63\x20\x23\ -\x36\x44\x36\x34\x38\x44\x22\x2c\x0a\x22\x27\x26\x09\x63\x20\x23\ -\x38\x38\x38\x30\x41\x30\x22\x2c\x0a\x22\x29\x26\x09\x63\x20\x23\ -\x38\x39\x38\x31\x41\x31\x22\x2c\x0a\x22\x21\x26\x09\x63\x20\x23\ -\x37\x37\x36\x45\x39\x33\x22\x2c\x0a\x22\x7e\x26\x09\x63\x20\x23\ -\x35\x34\x34\x38\x37\x37\x22\x2c\x0a\x22\x7b\x26\x09\x63\x20\x23\ -\x33\x37\x32\x44\x36\x38\x22\x2c\x0a\x22\x5d\x26\x09\x63\x20\x23\ -\x44\x37\x44\x35\x45\x30\x22\x2c\x0a\x22\x5e\x26\x09\x63\x20\x23\ -\x44\x30\x44\x43\x45\x33\x22\x2c\x0a\x22\x2f\x26\x09\x63\x20\x23\ -\x36\x46\x39\x35\x41\x46\x22\x2c\x0a\x22\x28\x26\x09\x63\x20\x23\ -\x39\x34\x42\x30\x43\x33\x22\x2c\x0a\x22\x5f\x26\x09\x63\x20\x23\ -\x39\x38\x42\x33\x43\x34\x22\x2c\x0a\x22\x3a\x26\x09\x63\x20\x23\ -\x38\x38\x38\x31\x41\x32\x22\x2c\x0a\x22\x3c\x26\x09\x63\x20\x23\ -\x33\x30\x32\x33\x35\x45\x22\x2c\x0a\x22\x5b\x26\x09\x63\x20\x23\ -\x32\x32\x31\x36\x35\x42\x22\x2c\x0a\x22\x7d\x26\x09\x63\x20\x23\ -\x32\x41\x31\x44\x35\x44\x22\x2c\x0a\x22\x7c\x26\x09\x63\x20\x23\ -\x33\x44\x33\x42\x36\x45\x22\x2c\x0a\x22\x31\x26\x09\x63\x20\x23\ -\x32\x44\x35\x34\x38\x31\x22\x2c\x0a\x22\x32\x26\x09\x63\x20\x23\ -\x30\x46\x34\x31\x37\x35\x22\x2c\x0a\x22\x33\x26\x09\x63\x20\x23\ -\x32\x34\x32\x44\x36\x38\x22\x2c\x0a\x22\x34\x26\x09\x63\x20\x23\ -\x33\x38\x32\x43\x36\x35\x22\x2c\x0a\x22\x35\x26\x09\x63\x20\x23\ -\x32\x36\x31\x41\x35\x41\x22\x2c\x0a\x22\x36\x26\x09\x63\x20\x23\ -\x33\x36\x32\x39\x36\x32\x22\x2c\x0a\x22\x37\x26\x09\x63\x20\x23\ -\x45\x34\x45\x41\x45\x45\x22\x2c\x0a\x22\x38\x26\x09\x63\x20\x23\ -\x42\x44\x43\x45\x44\x38\x22\x2c\x0a\x22\x39\x26\x09\x63\x20\x23\ -\x42\x46\x42\x43\x43\x44\x22\x2c\x0a\x22\x30\x26\x09\x63\x20\x23\ -\x32\x46\x32\x34\x36\x32\x22\x2c\x0a\x22\x61\x26\x09\x63\x20\x23\ -\x32\x43\x31\x45\x35\x45\x22\x2c\x0a\x22\x62\x26\x09\x63\x20\x23\ -\x32\x42\x32\x43\x36\x33\x22\x2c\x0a\x22\x63\x26\x09\x63\x20\x23\ -\x31\x39\x34\x30\x37\x33\x22\x2c\x0a\x22\x64\x26\x09\x63\x20\x23\ -\x31\x34\x34\x31\x37\x36\x22\x2c\x0a\x22\x65\x26\x09\x63\x20\x23\ -\x32\x36\x32\x44\x36\x35\x22\x2c\x0a\x22\x66\x26\x09\x63\x20\x23\ -\x41\x34\x39\x46\x42\x38\x22\x2c\x0a\x22\x67\x26\x09\x63\x20\x23\ -\x46\x43\x46\x44\x46\x43\x22\x2c\x0a\x22\x68\x26\x09\x63\x20\x23\ -\x45\x35\x45\x42\x45\x46\x22\x2c\x0a\x22\x69\x26\x09\x63\x20\x23\ -\x36\x41\x36\x32\x38\x44\x22\x2c\x0a\x22\x6a\x26\x09\x63\x20\x23\ -\x32\x35\x32\x41\x36\x35\x22\x2c\x0a\x22\x6b\x26\x09\x63\x20\x23\ -\x31\x34\x34\x30\x37\x33\x22\x2c\x0a\x22\x6c\x26\x09\x63\x20\x23\ -\x32\x32\x32\x37\x36\x34\x22\x2c\x0a\x22\x6d\x26\x09\x63\x20\x23\ -\x32\x45\x32\x30\x35\x43\x22\x2c\x0a\x22\x6e\x26\x09\x63\x20\x23\ -\x35\x32\x34\x39\x37\x44\x22\x2c\x0a\x22\x6f\x26\x09\x63\x20\x23\ -\x45\x34\x45\x42\x45\x45\x22\x2c\x0a\x22\x70\x26\x09\x63\x20\x23\ -\x39\x38\x42\x32\x43\x33\x22\x2c\x0a\x22\x71\x26\x09\x63\x20\x23\ -\x46\x30\x46\x34\x46\x35\x22\x2c\x0a\x22\x72\x26\x09\x63\x20\x23\ -\x42\x34\x42\x31\x43\x35\x22\x2c\x0a\x22\x73\x26\x09\x63\x20\x23\ -\x32\x43\x32\x30\x36\x30\x22\x2c\x0a\x22\x74\x26\x09\x63\x20\x23\ -\x32\x38\x31\x46\x35\x45\x22\x2c\x0a\x22\x75\x26\x09\x63\x20\x23\ -\x32\x34\x32\x32\x36\x30\x22\x2c\x0a\x22\x76\x26\x09\x63\x20\x23\ -\x32\x41\x33\x30\x36\x37\x22\x2c\x0a\x22\x77\x26\x09\x63\x20\x23\ -\x31\x43\x33\x31\x36\x41\x22\x2c\x0a\x22\x78\x26\x09\x63\x20\x23\ -\x31\x30\x33\x46\x37\x34\x22\x2c\x0a\x22\x79\x26\x09\x63\x20\x23\ -\x31\x39\x33\x46\x37\x34\x22\x2c\x0a\x22\x7a\x26\x09\x63\x20\x23\ -\x32\x44\x32\x45\x36\x37\x22\x2c\x0a\x22\x41\x26\x09\x63\x20\x23\ -\x33\x37\x32\x39\x36\x31\x22\x2c\x0a\x22\x42\x26\x09\x63\x20\x23\ -\x32\x42\x31\x45\x35\x43\x22\x2c\x0a\x22\x43\x26\x09\x63\x20\x23\ -\x39\x44\x39\x38\x42\x34\x22\x2c\x0a\x22\x44\x26\x09\x63\x20\x23\ -\x43\x39\x44\x37\x44\x46\x22\x2c\x0a\x22\x45\x26\x09\x63\x20\x23\ -\x36\x35\x38\x44\x41\x39\x22\x2c\x0a\x22\x46\x26\x09\x63\x20\x23\ -\x39\x30\x41\x44\x43\x32\x22\x2c\x0a\x22\x47\x26\x09\x63\x20\x23\ -\x37\x36\x36\x45\x39\x36\x22\x2c\x0a\x22\x48\x26\x09\x63\x20\x23\ -\x32\x32\x31\x37\x35\x41\x22\x2c\x0a\x22\x49\x26\x09\x63\x20\x23\ -\x31\x39\x32\x37\x36\x34\x22\x2c\x0a\x22\x4a\x26\x09\x63\x20\x23\ -\x31\x32\x33\x37\x36\x46\x22\x2c\x0a\x22\x4b\x26\x09\x63\x20\x23\ -\x31\x30\x34\x32\x37\x35\x22\x2c\x0a\x22\x4c\x26\x09\x63\x20\x23\ -\x30\x42\x34\x35\x37\x38\x22\x2c\x0a\x22\x4d\x26\x09\x63\x20\x23\ -\x30\x43\x34\x42\x37\x43\x22\x2c\x0a\x22\x4e\x26\x09\x63\x20\x23\ -\x30\x39\x34\x43\x37\x44\x22\x2c\x0a\x22\x4f\x26\x09\x63\x20\x23\ -\x31\x42\x33\x44\x37\x32\x22\x2c\x0a\x22\x50\x26\x09\x63\x20\x23\ -\x32\x44\x32\x38\x36\x33\x22\x2c\x0a\x22\x51\x26\x09\x63\x20\x23\ -\x33\x31\x32\x33\x36\x30\x22\x2c\x0a\x22\x52\x26\x09\x63\x20\x23\ -\x36\x34\x35\x43\x38\x41\x22\x2c\x0a\x22\x53\x26\x09\x63\x20\x23\ -\x44\x35\x44\x46\x45\x36\x22\x2c\x0a\x22\x54\x26\x09\x63\x20\x23\ -\x41\x45\x43\x32\x43\x46\x22\x2c\x0a\x22\x55\x26\x09\x63\x20\x23\ -\x42\x36\x43\x38\x44\x35\x22\x2c\x0a\x22\x56\x26\x09\x63\x20\x23\ -\x41\x38\x42\x45\x43\x45\x22\x2c\x0a\x22\x57\x26\x09\x63\x20\x23\ -\x39\x43\x41\x36\x42\x44\x22\x2c\x0a\x22\x58\x26\x09\x63\x20\x23\ -\x32\x34\x32\x36\x36\x35\x22\x2c\x0a\x22\x59\x26\x09\x63\x20\x23\ -\x32\x30\x31\x35\x35\x39\x22\x2c\x0a\x22\x5a\x26\x09\x63\x20\x23\ -\x31\x42\x32\x38\x36\x36\x22\x2c\x0a\x22\x60\x26\x09\x63\x20\x23\ -\x30\x45\x34\x35\x37\x41\x22\x2c\x0a\x22\x20\x2a\x09\x63\x20\x23\ -\x30\x38\x34\x42\x37\x45\x22\x2c\x0a\x22\x2e\x2a\x09\x63\x20\x23\ -\x30\x38\x34\x42\x37\x44\x22\x2c\x0a\x22\x2b\x2a\x09\x63\x20\x23\ -\x30\x38\x34\x41\x37\x45\x22\x2c\x0a\x22\x40\x2a\x09\x63\x20\x23\ -\x30\x46\x34\x36\x37\x38\x22\x2c\x0a\x22\x23\x2a\x09\x63\x20\x23\ -\x33\x31\x33\x30\x36\x38\x22\x2c\x0a\x22\x24\x2a\x09\x63\x20\x23\ -\x33\x38\x32\x39\x36\x31\x22\x2c\x0a\x22\x25\x2a\x09\x63\x20\x23\ -\x33\x38\x32\x39\x36\x32\x22\x2c\x0a\x22\x26\x2a\x09\x63\x20\x23\ -\x32\x37\x31\x41\x35\x44\x22\x2c\x0a\x22\x2a\x2a\x09\x63\x20\x23\ -\x33\x43\x33\x32\x36\x43\x22\x2c\x0a\x22\x3d\x2a\x09\x63\x20\x23\ -\x42\x42\x42\x38\x43\x41\x22\x2c\x0a\x22\x2d\x2a\x09\x63\x20\x23\ -\x38\x39\x41\x36\x42\x42\x22\x2c\x0a\x22\x3b\x2a\x09\x63\x20\x23\ -\x43\x39\x44\x38\x45\x30\x22\x2c\x0a\x22\x3e\x2a\x09\x63\x20\x23\ -\x46\x42\x46\x43\x46\x43\x22\x2c\x0a\x22\x2c\x2a\x09\x63\x20\x23\ -\x36\x44\x39\x34\x42\x30\x22\x2c\x0a\x22\x27\x2a\x09\x63\x20\x23\ -\x33\x38\x35\x34\x38\x33\x22\x2c\x0a\x22\x29\x2a\x09\x63\x20\x23\ -\x33\x33\x32\x39\x36\x37\x22\x2c\x0a\x22\x21\x2a\x09\x63\x20\x23\ -\x31\x46\x31\x33\x35\x38\x22\x2c\x0a\x22\x7e\x2a\x09\x63\x20\x23\ -\x32\x36\x31\x39\x35\x43\x22\x2c\x0a\x22\x7b\x2a\x09\x63\x20\x23\ -\x31\x43\x33\x39\x37\x30\x22\x2c\x0a\x22\x5d\x2a\x09\x63\x20\x23\ -\x30\x38\x34\x41\x37\x43\x22\x2c\x0a\x22\x5e\x2a\x09\x63\x20\x23\ -\x30\x41\x34\x44\x37\x46\x22\x2c\x0a\x22\x2f\x2a\x09\x63\x20\x23\ -\x31\x42\x33\x45\x37\x32\x22\x2c\x0a\x22\x28\x2a\x09\x63\x20\x23\ -\x33\x33\x32\x34\x36\x30\x22\x2c\x0a\x22\x5f\x2a\x09\x63\x20\x23\ -\x33\x32\x32\x34\x36\x31\x22\x2c\x0a\x22\x3a\x2a\x09\x63\x20\x23\ -\x33\x31\x32\x34\x36\x30\x22\x2c\x0a\x22\x3c\x2a\x09\x63\x20\x23\ -\x32\x31\x31\x36\x35\x39\x22\x2c\x0a\x22\x5b\x2a\x09\x63\x20\x23\ -\x39\x41\x39\x35\x42\x31\x22\x2c\x0a\x22\x7d\x2a\x09\x63\x20\x23\ -\x43\x35\x44\x34\x44\x45\x22\x2c\x0a\x22\x7c\x2a\x09\x63\x20\x23\ -\x37\x45\x39\x45\x42\x36\x22\x2c\x0a\x22\x31\x2a\x09\x63\x20\x23\ -\x39\x36\x42\x32\x43\x34\x22\x2c\x0a\x22\x32\x2a\x09\x63\x20\x23\ -\x41\x39\x43\x30\x43\x46\x22\x2c\x0a\x22\x33\x2a\x09\x63\x20\x23\ -\x33\x34\x36\x42\x39\x32\x22\x2c\x0a\x22\x34\x2a\x09\x63\x20\x23\ -\x39\x44\x42\x36\x43\x38\x22\x2c\x0a\x22\x35\x2a\x09\x63\x20\x23\ -\x39\x43\x39\x37\x42\x33\x22\x2c\x0a\x22\x36\x2a\x09\x63\x20\x23\ -\x32\x39\x31\x45\x35\x44\x22\x2c\x0a\x22\x37\x2a\x09\x63\x20\x23\ -\x31\x46\x31\x36\x35\x41\x22\x2c\x0a\x22\x38\x2a\x09\x63\x20\x23\ -\x31\x39\x32\x42\x36\x37\x22\x2c\x0a\x22\x39\x2a\x09\x63\x20\x23\ -\x31\x30\x34\x33\x37\x36\x22\x2c\x0a\x22\x30\x2a\x09\x63\x20\x23\ -\x30\x44\x34\x32\x37\x37\x22\x2c\x0a\x22\x61\x2a\x09\x63\x20\x23\ -\x30\x41\x34\x42\x37\x44\x22\x2c\x0a\x22\x62\x2a\x09\x63\x20\x23\ -\x32\x36\x33\x33\x36\x41\x22\x2c\x0a\x22\x63\x2a\x09\x63\x20\x23\ -\x33\x35\x32\x36\x36\x30\x22\x2c\x0a\x22\x64\x2a\x09\x63\x20\x23\ -\x33\x30\x32\x31\x35\x45\x22\x2c\x0a\x22\x65\x2a\x09\x63\x20\x23\ -\x38\x46\x38\x38\x41\x41\x22\x2c\x0a\x22\x66\x2a\x09\x63\x20\x23\ -\x46\x45\x46\x44\x46\x44\x22\x2c\x0a\x22\x67\x2a\x09\x63\x20\x23\ -\x41\x35\x42\x42\x43\x41\x22\x2c\x0a\x22\x68\x2a\x09\x63\x20\x23\ -\x42\x45\x43\x46\x44\x39\x22\x2c\x0a\x22\x69\x2a\x09\x63\x20\x23\ -\x45\x39\x45\x46\x46\x30\x22\x2c\x0a\x22\x6a\x2a\x09\x63\x20\x23\ -\x41\x32\x42\x42\x43\x41\x22\x2c\x0a\x22\x6b\x2a\x09\x63\x20\x23\ -\x32\x41\x36\x34\x38\x44\x22\x2c\x0a\x22\x6c\x2a\x09\x63\x20\x23\ -\x43\x45\x44\x41\x45\x34\x22\x2c\x0a\x22\x6d\x2a\x09\x63\x20\x23\ -\x46\x44\x46\x44\x46\x43\x22\x2c\x0a\x22\x6e\x2a\x09\x63\x20\x23\ -\x39\x39\x39\x34\x42\x30\x22\x2c\x0a\x22\x6f\x2a\x09\x63\x20\x23\ -\x33\x32\x32\x36\x36\x35\x22\x2c\x0a\x22\x70\x2a\x09\x63\x20\x23\ -\x31\x42\x32\x32\x36\x31\x22\x2c\x0a\x22\x71\x2a\x09\x63\x20\x23\ -\x31\x30\x33\x36\x36\x46\x22\x2c\x0a\x22\x72\x2a\x09\x63\x20\x23\ -\x30\x43\x34\x35\x37\x38\x22\x2c\x0a\x22\x73\x2a\x09\x63\x20\x23\ -\x31\x39\x33\x35\x36\x45\x22\x2c\x0a\x22\x74\x2a\x09\x63\x20\x23\ -\x32\x32\x32\x30\x35\x46\x22\x2c\x0a\x22\x75\x2a\x09\x63\x20\x23\ -\x31\x36\x33\x35\x36\x45\x22\x2c\x0a\x22\x76\x2a\x09\x63\x20\x23\ -\x31\x30\x34\x34\x37\x37\x22\x2c\x0a\x22\x77\x2a\x09\x63\x20\x23\ -\x32\x44\x32\x37\x36\x32\x22\x2c\x0a\x22\x78\x2a\x09\x63\x20\x23\ -\x33\x31\x32\x32\x35\x46\x22\x2c\x0a\x22\x79\x2a\x09\x63\x20\x23\ -\x38\x42\x38\x35\x41\x36\x22\x2c\x0a\x22\x7a\x2a\x09\x63\x20\x23\ -\x41\x46\x43\x33\x44\x30\x22\x2c\x0a\x22\x41\x2a\x09\x63\x20\x23\ -\x39\x37\x42\x32\x43\x34\x22\x2c\x0a\x22\x42\x2a\x09\x63\x20\x23\ -\x39\x36\x42\x31\x43\x33\x22\x2c\x0a\x22\x43\x2a\x09\x63\x20\x23\ -\x39\x44\x42\x37\x43\x38\x22\x2c\x0a\x22\x44\x2a\x09\x63\x20\x23\ -\x32\x39\x36\x33\x38\x42\x22\x2c\x0a\x22\x45\x2a\x09\x63\x20\x23\ -\x42\x41\x43\x44\x44\x38\x22\x2c\x0a\x22\x46\x2a\x09\x63\x20\x23\ -\x45\x42\x46\x30\x46\x32\x22\x2c\x0a\x22\x47\x2a\x09\x63\x20\x23\ -\x34\x36\x36\x37\x39\x30\x22\x2c\x0a\x22\x48\x2a\x09\x63\x20\x23\ -\x31\x31\x34\x38\x37\x42\x22\x2c\x0a\x22\x49\x2a\x09\x63\x20\x23\ -\x30\x46\x33\x41\x37\x31\x22\x2c\x0a\x22\x4a\x2a\x09\x63\x20\x23\ -\x31\x41\x32\x36\x36\x35\x22\x2c\x0a\x22\x4b\x2a\x09\x63\x20\x23\ -\x32\x36\x32\x31\x35\x46\x22\x2c\x0a\x22\x4c\x2a\x09\x63\x20\x23\ -\x32\x30\x32\x41\x36\x35\x22\x2c\x0a\x22\x4d\x2a\x09\x63\x20\x23\ -\x32\x43\x32\x30\x35\x45\x22\x2c\x0a\x22\x4e\x2a\x09\x63\x20\x23\ -\x39\x36\x39\x30\x41\x45\x22\x2c\x0a\x22\x4f\x2a\x09\x63\x20\x23\ -\x45\x42\x46\x30\x46\x31\x22\x2c\x0a\x22\x50\x2a\x09\x63\x20\x23\ -\x42\x35\x43\x38\x44\x33\x22\x2c\x0a\x22\x51\x2a\x09\x63\x20\x23\ -\x41\x32\x42\x41\x43\x39\x22\x2c\x0a\x22\x52\x2a\x09\x63\x20\x23\ -\x39\x32\x41\x45\x43\x31\x22\x2c\x0a\x22\x53\x2a\x09\x63\x20\x23\ -\x46\x30\x46\x33\x46\x34\x22\x2c\x0a\x22\x54\x2a\x09\x63\x20\x23\ -\x42\x36\x43\x41\x44\x36\x22\x2c\x0a\x22\x55\x2a\x09\x63\x20\x23\ -\x33\x32\x36\x38\x39\x30\x22\x2c\x0a\x22\x56\x2a\x09\x63\x20\x23\ -\x33\x38\x36\x44\x39\x33\x22\x2c\x0a\x22\x57\x2a\x09\x63\x20\x23\ -\x32\x39\x36\x32\x38\x42\x22\x2c\x0a\x22\x58\x2a\x09\x63\x20\x23\ -\x35\x31\x37\x46\x41\x30\x22\x2c\x0a\x22\x59\x2a\x09\x63\x20\x23\ -\x38\x36\x39\x44\x42\x36\x22\x2c\x0a\x22\x5a\x2a\x09\x63\x20\x23\ -\x36\x35\x36\x32\x38\x44\x22\x2c\x0a\x22\x60\x2a\x09\x63\x20\x23\ -\x33\x30\x32\x34\x36\x30\x22\x2c\x0a\x22\x20\x3d\x09\x63\x20\x23\ -\x35\x41\x35\x31\x38\x30\x22\x2c\x0a\x22\x2e\x3d\x09\x63\x20\x23\ -\x44\x45\x45\x36\x45\x41\x22\x2c\x0a\x22\x2b\x3d\x09\x63\x20\x23\ -\x41\x46\x43\x35\x44\x32\x22\x2c\x0a\x22\x40\x3d\x09\x63\x20\x23\ -\x38\x46\x41\x41\x42\x44\x22\x2c\x0a\x22\x23\x3d\x09\x63\x20\x23\ -\x33\x44\x36\x46\x39\x33\x22\x2c\x0a\x22\x24\x3d\x09\x63\x20\x23\ -\x42\x33\x43\x37\x44\x34\x22\x2c\x0a\x22\x25\x3d\x09\x63\x20\x23\ -\x41\x31\x42\x39\x43\x41\x22\x2c\x0a\x22\x26\x3d\x09\x63\x20\x23\ 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-\x38\x34\x41\x33\x42\x39\x22\x2c\x0a\x22\x28\x3d\x09\x63\x20\x23\ -\x43\x31\x44\x32\x44\x43\x22\x2c\x0a\x22\x5f\x3d\x09\x63\x20\x23\ -\x44\x45\x44\x44\x45\x35\x22\x2c\x0a\x22\x3a\x3d\x09\x63\x20\x23\ -\x39\x44\x39\x38\x42\x33\x22\x2c\x0a\x22\x3c\x3d\x09\x63\x20\x23\ -\x35\x44\x35\x34\x38\x33\x22\x2c\x0a\x22\x5b\x3d\x09\x63\x20\x23\ -\x33\x35\x32\x39\x36\x33\x22\x2c\x0a\x22\x7d\x3d\x09\x63\x20\x23\ -\x33\x36\x32\x37\x36\x31\x22\x2c\x0a\x22\x7c\x3d\x09\x63\x20\x23\ -\x35\x30\x34\x36\x37\x39\x22\x2c\x0a\x22\x31\x3d\x09\x63\x20\x23\ -\x39\x32\x38\x44\x41\x42\x22\x2c\x0a\x22\x32\x3d\x09\x63\x20\x23\ -\x44\x35\x44\x33\x44\x44\x22\x2c\x0a\x22\x33\x3d\x09\x63\x20\x23\ -\x44\x38\x45\x33\x45\x38\x22\x2c\x0a\x22\x34\x3d\x09\x63\x20\x23\ -\x39\x31\x41\x45\x43\x31\x22\x2c\x0a\x22\x35\x3d\x09\x63\x20\x23\ -\x38\x37\x41\x36\x42\x41\x22\x2c\x0a\x22\x36\x3d\x09\x63\x20\x23\ -\x44\x46\x45\x36\x45\x39\x22\x2c\x0a\x22\x37\x3d\x09\x63\x20\x23\ 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\x00\x00\x01\x60\xa3\x87\x69\x88\ -\x00\x00\x00\x82\x00\x00\x00\x00\x00\x01\x00\x00\x04\x5a\ +\x00\x00\x00\xf8\x00\x00\x00\x00\x00\x01\x00\x02\x59\x13\ \x00\x00\x01\x5b\xd3\x8f\x2f\x20\ " diff --git a/examples/plot_example.py b/examples/plot_example.py index 82a5a23..82d99df 100644 --- a/examples/plot_example.py +++ b/examples/plot_example.py @@ -14,7 +14,7 @@ os.chdir('..') import dgp.lib.project as project -import dgp.lib.plotter as plotter +import gui.plotter as plotter class MockDataChannel: diff --git a/tests/test_eotvos.py b/tests/test_eotvos.py index 5d75e9c..0c9a1b0 100644 --- a/tests/test_eotvos.py +++ b/tests/test_eotvos.py @@ -17,19 +17,6 @@ class TestEotvos(unittest.TestCase): def setUp(self): pass - @unittest.skip("test_derivative not implemented.") - def test_derivative(self): - """Test derivation function against table of values calculated in MATLAB""" - dlat = [] - ddlat = [] - dlon = [] - ddlon = [] - dht = [] - ddht = [] - # with sample_dir.joinpath('result_derivative.csv').open() as fd: - # reader = csv.DictReader(fd) - # dlat = list(map(lambda line: dlat.append(line['dlat']), reader)) - def test_eotvos(self): """Test Eotvos function against corrections generated with MATLAB program.""" # Ensure gps_fields are ordered correctly relative to test file diff --git a/tests/test_plotters.py b/tests/test_plotters.py new file mode 100644 index 0000000..eaa4cc8 --- /dev/null +++ b/tests/test_plotters.py @@ -0,0 +1,154 @@ +# coding: utf-8 + +import unittest +from pathlib import Path +from datetime import datetime + +from matplotlib.dates import num2date, date2num +from matplotlib.lines import Line2D +from matplotlib.axes import Axes + +from .context import dgp +from dgp.lib.types import DataSource, DataChannel +from dgp.lib.gravity_ingestor import read_at1a +from dgp.lib.enums import DataTypes +from dgp.gui.mplutils import StackedAxesManager, _pad, COLOR_CYCLE +from dgp.gui.plotter import BasePlottingCanvas + + +class MockDataSource(DataSource): + def __init__(self, data, uid, filename, fields, dtype, x0, x1): + super().__init__(uid, filename, fields, dtype, x0, x1) + self._data = data + + # Patch load func to remove dependence on HDF5 storage for test + def load(self, field=None): + if field is not None: + return self._data[field] + return self._data + + +class BasicPlotter(BasePlottingCanvas): + def __init__(self, rows): + super().__init__() + self.axmgr = StackedAxesManager(self.figure, rows=rows) + + +class TestPlotters(unittest.TestCase): + def setUp(self): + grav_path = Path('tests/sample_data/test_data.csv') + self.df = read_at1a(str(grav_path)) + x0 = self.df.index.min() + x1 = self.df.index.max() + self.dsrc = MockDataSource(self.df, 'abc', grav_path.name, + self.df.keys(), DataTypes.GRAVITY, x0, x1) + self.grav_ch = DataChannel('gravity', self.dsrc) + self.cross_ch = DataChannel('cross', self.dsrc) + self.long_ch = DataChannel('long', self.dsrc) + self.plotter = BasicPlotter(rows=2) + self.mgr = self.plotter.axmgr + + def test_magic_methods(self): + """Test __len__ __contains__ __getitem__ methods.""" + # Test count of Axes + self.assertEqual(2, len(self.mgr)) + + grav_uid = self.mgr.add_series(self.grav_ch.series(), row=0) + self.assertIn(grav_uid, self.mgr) + + # Be aware that the __getitem__ returns a tuple of (Axes, Axes) + self.assertEqual(self.mgr.get_axes(0, twin=False), self.mgr[0][0]) + + def test_min_max(self): + x0, x1 = self.dsrc.get_xlim() + x0_num = date2num(x0) + x1_num = date2num(x1) + self.assertIsInstance(x0_num, float) + self.assertEqual(736410.6114664351, x0_num) + self.assertIsInstance(x1_num, float) + self.assertEqual(736410.6116793981, x1_num) + + # Y-Limits are local to the x-span of the data being viewed. + # As such I don't think it makes sense to store the ylim value within + # the data source + + # self.assertIsNone(self.grav_ch._ylim) + # y0, y1 = self.grav_ch.get_ylim() + # self.assertEqual((y0, y1), self.grav_ch._ylim) + + # grav = self.df['gravity'] + # _y0 = grav.min() + # _y1 = grav.max() + # self.assertEqual(_y0, y0) + # self.assertEqual(_y1, y1) + + def test_axmgr_workflow(self): + """Test adding and removing series to/from the AxesManager + Verify correct setting of x/y plot limits.""" + ax = self.mgr.get_axes(0, twin=False) + twin = self.mgr.get_axes(0, twin=True) + + # ADD 1 + uid_1 = self.mgr.add_series(self.grav_ch.series(), row=0) + self.assertEqual(1, uid_1) + self.assertEqual(1, len(ax.lines)) + self.mgr.remove_series(uid_1) + self.assertEqual(0, len(ax.lines)) + self.assertEqual((-1, 1), ax.get_ylim()) + + # Test margin setting method which adds 5% padding to view of data + left, right = self.grav_ch.get_xlim() + left, right = _pad(date2num(left), date2num(right), self.mgr._padding) + self.assertEqual((left, right), ax.get_xlim()) + + # Series should be added to primary axes here as last line was removed + self.assertEqual(0, len(ax.lines)) + # ADD 2 + uid_2 = self.mgr.add_series(self.grav_ch.series(), row=0, + uid=self.grav_ch.uid) + self.assertEqual(self.grav_ch.uid, uid_2) + self.assertEqual(0, len(twin.lines)) + self.assertEqual(1, len(ax.lines)) + + # ADD 3 + uid_3 = self.mgr.add_series(self.cross_ch.series(), row=0) + line_3 = self.mgr._lines[uid_3] # type: Line2D + self.assertEqual(COLOR_CYCLE[2], line_3.get_color()) + + # Add 1 to row 2 - Verify independent color cycling + uid_4 = self.mgr.add_series(self.grav_ch.series(), row=1) + line_4 = self.mgr._lines[uid_4] + self.assertEqual(COLOR_CYCLE[0], line_4.get_color()) + + # Test attempt to remove invalid UID + with self.assertRaises(ValueError): + self.mgr.remove_series('uid_invalid', 7, 12, uid_3) + + def test_reset_view(self): + """Test view limit functionality when resetting view (home button)""" + # Zoom Box ((x0, x1), (y0, y1)) + zoom_area = ((500, 600), (-1, 0.5)) + + data = self.grav_ch.series() + data_x = date2num(data.index.min()), date2num(data.index.max()) + data_y = data.min(), data.max() + + data_uid = self.mgr.add_series(data, row=0) + ax0 = self.mgr.get_axes(0, twin=False) + self.assertEqual(1, len(ax0.lines)) + + ax0.set_xlim(*zoom_area[0]) + ax0.set_ylim(*zoom_area[1]) + self.assertEqual(zoom_area[0], ax0.get_xlim()) + self.assertEqual(zoom_area[1], ax0.get_ylim()) + + self.mgr.reset_view() + # Assert view limits are equal to data limits + 5% padding after reset + self.assertEqual(_pad(*data_x), ax0.get_xlim()) + self.assertEqual(_pad(*data_y), ax0.get_ylim()) + + self.mgr.remove_series(data_uid) + self.assertEqual((-1.0, 1.0), ax0.get_ylim()) + + # Test reset_view with no lines plotted + self.mgr.reset_view() From 385918b8b28bbe39e8bd76d7327cff64cb44ad2e Mon Sep 17 00:00:00 2001 From: "Zachery P. Brady" Date: Mon, 15 Jan 2018 10:14:52 -0700 Subject: [PATCH 048/236] FIX: Enable GUI Emulation for Travis Testing --- .travis.yml | 4 ++++ 1 file changed, 4 insertions(+) diff --git a/.travis.yml b/.travis.yml index 47a2e0d..7b3df9d 100644 --- a/.travis.yml +++ b/.travis.yml @@ -5,6 +5,10 @@ python: install: - pip install -r requirements.txt - pip install coverage +before_script: + - "export DISPLAY=:99.0" + - "sh -e /etc/init.d/xvfb start" + - sleep 3 script: coverage run --source=dgp -m unittest discover notifications: From 7a7cdb77fd6fb69ce491beece55fb0745f7fe2c4 Mon Sep 17 00:00:00 2001 From: Zachery Brady Date: Mon, 15 Jan 2018 12:12:57 -0700 Subject: [PATCH 049/236] FIX: Fixed dialog tests and resource_rc lookups. Added build_uic script to compile Python classes from Qt .ui files. Experimental travis.yml modification to build .ui files prior to tests. --- .travis.yml | 1 + build/build_uic.py | 11 +++++++++++ dgp/gui/dialogs.py | 23 ++++++++++++----------- dgp/gui/ui/data_import_dialog.ui | 4 +--- tests/test_dialogs.py | 6 ------ 5 files changed, 25 insertions(+), 20 deletions(-) create mode 100644 build/build_uic.py diff --git a/.travis.yml b/.travis.yml index 7b3df9d..4d7c1ab 100644 --- a/.travis.yml +++ b/.travis.yml @@ -9,6 +9,7 @@ before_script: - "export DISPLAY=:99.0" - "sh -e /etc/init.d/xvfb start" - sleep 3 + - python build/build_uic.py dgp/gui/ui script: coverage run --source=dgp -m unittest discover notifications: diff --git a/build/build_uic.py b/build/build_uic.py new file mode 100644 index 0000000..0c48d0c --- /dev/null +++ b/build/build_uic.py @@ -0,0 +1,11 @@ +# coding: utf-8 + +import sys + +from PyQt5.uic import compileUiDir + +"""Simple Qt build utility to compile all .ui files into Python modules.""" + + +if __name__ == '__main__': + compileUiDir(sys.argv[1], indent=4, from_imports=True, import_from='dgp') diff --git a/dgp/gui/dialogs.py b/dgp/gui/dialogs.py index 3daf925..3bb17c5 100644 --- a/dgp/gui/dialogs.py +++ b/dgp/gui/dialogs.py @@ -1,7 +1,6 @@ # coding: utf-8 import os -import io import csv import types import logging @@ -12,7 +11,6 @@ import PyQt5.Qt as Qt import PyQt5.QtWidgets as QtWidgets import PyQt5.QtCore as QtCore -from PyQt5.uic import loadUiType import dgp.lib.project as prj import dgp.lib.enums as enums @@ -20,11 +18,14 @@ from dgp.lib.etc import gen_uuid -data_dialog, _ = loadUiType('dgp/gui/ui/data_import_dialog.ui') -advanced_import, _ = loadUiType('dgp/gui/ui/advanced_data_import.ui') -edit_view, _ = loadUiType('dgp/gui/ui/edit_import_view.ui') -flight_dialog, _ = loadUiType('dgp/gui/ui/add_flight_dialog.ui') -project_dialog, _ = loadUiType('dgp/gui/ui/project_dialog.ui') +from dgp.gui.ui import add_flight_dialog, advanced_data_import, edit_import_view, project_dialog + + +# data_dialog, _ = loadUiType('dgp/gui/ui/data_import_dialog.ui') +# advanced_import, _ = loadUiType('dgp/gui/ui/advanced_data_import.ui') +# edit_view, _ = loadUiType('dgp/gui/ui/edit_import_view.ui') +# flight_dialog, _ = loadUiType('dgp/gui/ui/add_flight_dialog.ui') +# project_dialog, _ = loadUiType('dgp/gui/ui/project_dialog.ui') PATH_ERR = "Path cannot be empty." @@ -152,7 +153,7 @@ def validate_not_empty(self, terminator='*'): """ -class EditImportDialog(BaseDialog, edit_view): +class EditImportDialog(BaseDialog, edit_import_view.Ui_Dialog): """ Take lines of data with corresponding fields and populate custom Table Model Fields can be exchanged via a custom Selection Delegate, which provides a @@ -296,7 +297,7 @@ def _custom_label(self, index: QtCore.QModelIndex): return -class AdvancedImportDialog(BaseDialog, advanced_import): +class AdvancedImportDialog(BaseDialog, advanced_data_import.Ui_AdvancedImportData): """ Provides a dialog for importing Trajectory or Gravity data. This dialog computes and displays some basic file information, @@ -542,7 +543,7 @@ def browse(self): return -class AddFlightDialog(QtWidgets.QDialog, flight_dialog): +class AddFlightDialog(QtWidgets.QDialog, add_flight_dialog.Ui_NewFlight): def __init__(self, project, *args): super().__init__(*args) self.setupUi(self) @@ -593,7 +594,7 @@ def gravity(self): return None -class CreateProjectDialog(BaseDialog, project_dialog): +class CreateProjectDialog(BaseDialog, project_dialog.Ui_Dialog): def __init__(self, *args): super().__init__(msg_recvr='label_msg', *args) self.setupUi(self) diff --git a/dgp/gui/ui/data_import_dialog.ui b/dgp/gui/ui/data_import_dialog.ui index 66031e1..a8fd093 100644 --- a/dgp/gui/ui/data_import_dialog.ui +++ b/dgp/gui/ui/data_import_dialog.ui @@ -120,9 +120,7 @@ - - - + buttonBox diff --git a/tests/test_dialogs.py b/tests/test_dialogs.py index 4d029e7..d51c244 100644 --- a/tests/test_dialogs.py +++ b/tests/test_dialogs.py @@ -92,9 +92,3 @@ def test_advanced_import_dialog_trajectory(self): # Verify expected output, ordered correctly hms_expected = ['mdy', 'hms', 'lat', 'long', 'ell_ht'] self.assertEqual(hms_expected, t_dlg.params['columns']) - - - - - - From 6c04e168f5b72da6c65c8a7c6e948d99bb14b251 Mon Sep 17 00:00:00 2001 From: Zachery Brady Date: Mon, 15 Jan 2018 13:31:43 -0700 Subject: [PATCH 050/236] CLN/FIX: Minor tweaks. Added plot2_prototype example. --- .travis.yml | 1 + dgp/gui/main.py | 4 +- dgp/gui/mplutils.py | 6 ++ examples/plot2_prototype.py | 113 ++++++++++++++++++++++++++++++++++++ examples/plot_example.py | 2 +- 5 files changed, 123 insertions(+), 3 deletions(-) create mode 100644 examples/plot2_prototype.py diff --git a/.travis.yml b/.travis.yml index 4d7c1ab..3024b05 100644 --- a/.travis.yml +++ b/.travis.yml @@ -1,4 +1,5 @@ language: python +cache: pip python: - "3.5" - "3.6" diff --git a/dgp/gui/main.py b/dgp/gui/main.py index 47def53..e751cbc 100644 --- a/dgp/gui/main.py +++ b/dgp/gui/main.py @@ -359,7 +359,7 @@ def load_file(self, dtype, flight, **params): def _complete(data): self.add_data(data, dtype, flight, params.get('path', None)) - def _error(result): + def _result(result): err, exc = result prog.close() if err: @@ -372,7 +372,7 @@ def _error(result): self.log.info(msg) ld = loader.get_loader(parent=self, dtype=dtype, on_complete=_complete, - on_error=_error, **params) + on_error=_result, **params) ld.start() def save_project(self) -> None: diff --git a/dgp/gui/mplutils.py b/dgp/gui/mplutils.py index 2ca44ca..0495934 100644 --- a/dgp/gui/mplutils.py +++ b/dgp/gui/mplutils.py @@ -155,6 +155,12 @@ def __getitem__(self, index): # Experimental def add_inset_axes(self, row, position='upper right', height='15%', width='15%', labels=False, **kwargs) -> Axes: + """Add an inset axes on the base axes at given row + Default is to create an inset axes in the upper right corner, with height and width of 15% of the parent. + + This inset axes can be used for example to show the zoomed-in position of the main graph in relation to the + overall data. + """ try: return self._inset_axes[row] except KeyError: diff --git a/examples/plot2_prototype.py b/examples/plot2_prototype.py new file mode 100644 index 0000000..d5dae97 --- /dev/null +++ b/examples/plot2_prototype.py @@ -0,0 +1,113 @@ +import os +import sys +import uuid +import logging +import datetime + +import PyQt5.QtWidgets as QtWidgets +import PyQt5.Qt as Qt +import numpy as np +from pandas import Series, DatetimeIndex +from matplotlib.axes import Axes +from matplotlib.patches import Rectangle +from matplotlib.dates import date2num +from matplotlib.backends.backend_qt5 import NavigationToolbar2QT as NavToolbar + +os.chdir('..') +import dgp.lib.project as project +import dgp.gui.plotter as plotter +from dgp.gui.mplutils import StackedAxesManager + + +class MockDataChannel: + def __init__(self, series, label): + self._series = series + self.label = label + self.uid = uuid.uuid4().__str__() + + def series(self): + return self._series + + def plot(self, *args): + pass + + +class PlotExample(QtWidgets.QMainWindow): + def __init__(self): + super().__init__() + self.setWindowTitle('Plotter Testing') + self.setBaseSize(Qt.QSize(600, 600)) + self._flight = project.Flight(None, 'test') + + self.plot = plotter.BasePlottingCanvas(parent=self) + self.plot.figure.canvas.mpl_connect('pick_event', lambda x: print( + "Pick event handled")) + self.plot.mgr = StackedAxesManager(self.plot.figure, rows=2) + self._toolbar = NavToolbar(self.plot, parent=self) + self._toolbar.actions()[0] = QtWidgets.QAction("Reset View") + self._toolbar.actions()[0].triggered.connect(lambda x: print( + "Action 0 triggered")) + + plot_layout = QtWidgets.QVBoxLayout() + plot_layout.addWidget(self.plot) + plot_layout.addWidget(self._toolbar) + c_widget = QtWidgets.QWidget() + c_widget.setLayout(plot_layout) + + self.setCentralWidget(c_widget) + + plot_layout.addWidget(QtWidgets.QPushButton("Reset")) + + # toolbar = self.plot.get_toolbar(self) + self.show() + + def plot_sin(self): + idx = DatetimeIndex(freq='5S', start=datetime.datetime.now(), + periods=1000) + ser = Series([np.sin(x)*3 for x in np.arange(0, 100, 0.1)], index=idx) + self.plot.mgr.add_series(ser) + self.plot.mgr.add_series(-ser) + ins_0 = self.plot.mgr.add_inset_axes(0) # type: Axes + ins_0.plot(ser.index, ser.values) + x0, x1 = ins_0.get_xlim() + width = (x1 - x0) * .5 + y0, y1 = ins_0.get_ylim() + height = (y1 - y0) * .5 + # Draw rectangle patch on inset axes - proof of concept to add inset + # locator when zoomed in on large data set. + ax0 = self.plot.mgr[0][0] # type: Axes + rect = Rectangle((date2num(idx[0]), 0), width, height, + edgecolor='black', + linewidth=2, alpha=.5, fill='red') + rect.set_picker(True) + patch = ins_0.add_patch(rect) # type: Rectangle + # Future idea: Add click+drag to view patch to pan in main plot + def update_rect(ax: Axes): + x0, x1 = ax.get_xlim() + y0, y1 = ax.get_ylim() + patch.set_x(x0) + patch.set_y(y0) + height = y1 - y0 + width = x1 - x0 + patch.set_width(width) + patch.set_height(height) + ax.draw_artist(patch) + self.plot.draw() + + ax0.callbacks.connect('xlim_changed', update_rect) + ax0.callbacks.connect('ylim_changed', update_rect) + + self.plot.draw() + ins_1 = self.plot.mgr.add_inset_axes(1) + + +if __name__ == '__main__': + app = QtWidgets.QApplication(sys.argv) + _log = logging.getLogger() + _log.addHandler(logging.StreamHandler(sys.stdout)) + _log.setLevel(logging.DEBUG) + + window = PlotExample() + window.plot_sin() + sys.exit(app.exec_()) + diff --git a/examples/plot_example.py b/examples/plot_example.py index 82d99df..0f49baf 100644 --- a/examples/plot_example.py +++ b/examples/plot_example.py @@ -14,7 +14,7 @@ os.chdir('..') import dgp.lib.project as project -import gui.plotter as plotter +import dgp.gui.plotter as plotter class MockDataChannel: From 71b3cf25dd4e0c5daae23731cce037fe38f5222e Mon Sep 17 00:00:00 2001 From: bradyzp Date: Mon, 15 Jan 2018 13:37:43 -0700 Subject: [PATCH 051/236] EXP: Experimental Multiple Dispatch function --- dgp/lib/etc.py | 74 ++++++++++++++++++++++++++++++++++++++++++++++++-- 1 file changed, 72 insertions(+), 2 deletions(-) diff --git a/dgp/lib/etc.py b/dgp/lib/etc.py index 71fa07c..218192b 100644 --- a/dgp/lib/etc.py +++ b/dgp/lib/etc.py @@ -1,6 +1,9 @@ # coding: utf-8 import uuid +import functools +import collections + import numpy as np @@ -13,8 +16,9 @@ def interp_nans(y): def gen_uuid(prefix: str=''): """ - Generate a UUID4 String with optional prefix replacing the first len(prefix) characters of the - UUID. + Generate a UUID4 String with optional prefix replacing the first len(prefix) + characters of the UUID. + Parameters ---------- prefix : [str] @@ -27,3 +31,69 @@ def gen_uuid(prefix: str=''): """ base_uuid = uuid.uuid4().hex return '{}{}'.format(prefix, base_uuid[len(prefix):]) + + +def dispatch(type_=None): + """ + @Decorator + Pattern matching dispatcher of optional type constraint. + This works similar to the single dispatch decorator in the Python + functools module, however instead of dispatching based on type only, + this provides a more general dispatcher that can operate based on value + comparison. + + If type_ is specified, the registration function checks to ensure the + registration value is of the appropriate type. Otherwise any value is + permitted (as long as it is Hashable). + + """ + + def dispatch_inner(base_func): + dispatch_map = {} + + @functools.wraps(base_func) + def wrapper(match, *args, **kwargs): + # Strip args[0] off as match - delegated functions don't need it + if match in dispatch_map: + return dispatch_map[match](*args, **kwargs) + + return base_func(match, *args, **kwargs) + + def register(value): + """ + register is a decorator which takes a parameter of the type + specified in the dispatch() decorated method. + + The supplied enum value is then registered within the closures + dispatch_map for execution by the base dispatch function. + + Parameters + ---------- + value : type(type_) + + Returns + ------- + + """ + if not isinstance(value, collections.Hashable): + raise ValueError("Registration value must be Hashable") + if type_ is not None: + if not isinstance(value, type_): + raise TypeError("Invalid dispatch registration type, " + "must be of type {}".format(type_)) + elif isinstance(value, type): + # Don't allow builtin type registrations e.g. float, must be + # an instance of a builtin type (if there is no type_ declared) + raise TypeError("Invalid registration value, must be an " + "instance, not an instance of type.") + + def register_inner(func): + def reg_wrapper(*args, **kwargs): + return func(*args, **kwargs) + dispatch_map[value] = reg_wrapper + return reg_wrapper + return register_inner + + wrapper.register = register + return wrapper + return dispatch_inner From 7b3f2811b1a3a705b4e8a88243b446bd98de1078 Mon Sep 17 00:00:00 2001 From: Zachery Brady Date: Tue, 16 Jan 2018 08:02:34 -0700 Subject: [PATCH 052/236] FIX: Add compiled UI files to repo for testing. --- .gitignore | 1 - dgp/gui/ui/add_flight_dialog.py | 156 +++++++++++++ dgp/gui/ui/advanced_data_import.py | 231 +++++++++++++++++++ dgp/gui/ui/data_import_dialog.py | 85 +++++++ dgp/gui/ui/edit_import_view.py | 110 +++++++++ dgp/gui/ui/info_dialog.py | 34 +++ dgp/gui/ui/main_window.py | 343 +++++++++++++++++++++++++++++ dgp/gui/ui/project_dialog.py | 194 ++++++++++++++++ dgp/gui/ui/splash_screen.py | 126 +++++++++++ 9 files changed, 1279 insertions(+), 1 deletion(-) create mode 100644 dgp/gui/ui/add_flight_dialog.py create mode 100644 dgp/gui/ui/advanced_data_import.py create mode 100644 dgp/gui/ui/data_import_dialog.py create mode 100644 dgp/gui/ui/edit_import_view.py create mode 100644 dgp/gui/ui/info_dialog.py create mode 100644 dgp/gui/ui/main_window.py create mode 100644 dgp/gui/ui/project_dialog.py create mode 100644 dgp/gui/ui/splash_screen.py diff --git a/.gitignore b/.gitignore index 8a8f5ae..67f3618 100644 --- a/.gitignore +++ b/.gitignore @@ -13,7 +13,6 @@ venv/ docs/build/ # Specific Directives -dgp/gui/ui/*.py examples/local* tests/sample_data/eotvos_long_result.csv tests/sample_data/eotvos_long_input.txt diff --git a/dgp/gui/ui/add_flight_dialog.py b/dgp/gui/ui/add_flight_dialog.py new file mode 100644 index 0000000..9b473e6 --- /dev/null +++ b/dgp/gui/ui/add_flight_dialog.py @@ -0,0 +1,156 @@ +# -*- coding: utf-8 -*- + +# Form implementation generated from reading ui file 'dgp/gui/ui\add_flight_dialog.ui' +# +# Created by: PyQt5 UI code generator 5.9 +# +# WARNING! All changes made in this file will be lost! + +from PyQt5 import QtCore, QtGui, QtWidgets + +class Ui_NewFlight(object): + def setupUi(self, NewFlight): + NewFlight.setObjectName("NewFlight") + NewFlight.resize(550, 466) + NewFlight.setMaximumSize(QtCore.QSize(16777215, 16777215)) + icon = QtGui.QIcon() + icon.addPixmap(QtGui.QPixmap(":/icons/airborne"), QtGui.QIcon.Normal, QtGui.QIcon.Off) + NewFlight.setWindowIcon(icon) + NewFlight.setSizeGripEnabled(True) + self.verticalLayout = QtWidgets.QVBoxLayout(NewFlight) + self.verticalLayout.setObjectName("verticalLayout") + self.form_input_layout = QtWidgets.QFormLayout() + self.form_input_layout.setObjectName("form_input_layout") + self.label_name = QtWidgets.QLabel(NewFlight) + self.label_name.setObjectName("label_name") + self.form_input_layout.setWidget(1, QtWidgets.QFormLayout.LabelRole, self.label_name) + self.text_name = QtWidgets.QLineEdit(NewFlight) + self.text_name.setObjectName("text_name") + self.form_input_layout.setWidget(1, QtWidgets.QFormLayout.FieldRole, self.text_name) + self.label_date = QtWidgets.QLabel(NewFlight) + self.label_date.setObjectName("label_date") + self.form_input_layout.setWidget(2, QtWidgets.QFormLayout.LabelRole, self.label_date) + self.date_flight = QtWidgets.QDateEdit(NewFlight) + self.date_flight.setCalendarPopup(True) + self.date_flight.setDate(QtCore.QDate(2017, 1, 1)) + self.date_flight.setObjectName("date_flight") + self.form_input_layout.setWidget(2, QtWidgets.QFormLayout.FieldRole, self.date_flight) + self.label_meter = QtWidgets.QLabel(NewFlight) + self.label_meter.setObjectName("label_meter") + self.form_input_layout.setWidget(3, QtWidgets.QFormLayout.LabelRole, self.label_meter) + self.label_uuid = QtWidgets.QLabel(NewFlight) + self.label_uuid.setObjectName("label_uuid") + self.form_input_layout.setWidget(4, QtWidgets.QFormLayout.LabelRole, self.label_uuid) + self.combo_meter = QtWidgets.QComboBox(NewFlight) + self.combo_meter.setObjectName("combo_meter") + self.form_input_layout.setWidget(3, QtWidgets.QFormLayout.FieldRole, self.combo_meter) + self.text_uuid = QtWidgets.QLineEdit(NewFlight) + self.text_uuid.setEnabled(False) + self.text_uuid.setReadOnly(True) + self.text_uuid.setObjectName("text_uuid") + self.form_input_layout.setWidget(4, QtWidgets.QFormLayout.FieldRole, self.text_uuid) + self.label_gravity = QtWidgets.QLabel(NewFlight) + self.label_gravity.setObjectName("label_gravity") + self.form_input_layout.setWidget(5, QtWidgets.QFormLayout.LabelRole, self.label_gravity) + self.gravity_layout = QtWidgets.QHBoxLayout() + self.gravity_layout.setObjectName("gravity_layout") + self.path_gravity = QtWidgets.QLineEdit(NewFlight) + sizePolicy = QtWidgets.QSizePolicy(QtWidgets.QSizePolicy.Minimum, QtWidgets.QSizePolicy.Preferred) + sizePolicy.setHorizontalStretch(2) + sizePolicy.setVerticalStretch(0) + sizePolicy.setHeightForWidth(self.path_gravity.sizePolicy().hasHeightForWidth()) + self.path_gravity.setSizePolicy(sizePolicy) + self.path_gravity.setBaseSize(QtCore.QSize(200, 0)) + self.path_gravity.setObjectName("path_gravity") + self.gravity_layout.addWidget(self.path_gravity) + self.cb_grav_format = QtWidgets.QComboBox(NewFlight) + self.cb_grav_format.setObjectName("cb_grav_format") + self.gravity_layout.addWidget(self.cb_grav_format) + self.browse_gravity = QtWidgets.QToolButton(NewFlight) + sizePolicy = QtWidgets.QSizePolicy(QtWidgets.QSizePolicy.Maximum, QtWidgets.QSizePolicy.Preferred) + sizePolicy.setHorizontalStretch(0) + sizePolicy.setVerticalStretch(0) + sizePolicy.setHeightForWidth(self.browse_gravity.sizePolicy().hasHeightForWidth()) + self.browse_gravity.setSizePolicy(sizePolicy) + self.browse_gravity.setMaximumSize(QtCore.QSize(16777215, 16777215)) + self.browse_gravity.setBaseSize(QtCore.QSize(50, 0)) + self.browse_gravity.setObjectName("browse_gravity") + self.gravity_layout.addWidget(self.browse_gravity) + self.form_input_layout.setLayout(5, QtWidgets.QFormLayout.FieldRole, self.gravity_layout) + self.label_gps = QtWidgets.QLabel(NewFlight) + self.label_gps.setObjectName("label_gps") + self.form_input_layout.setWidget(6, QtWidgets.QFormLayout.LabelRole, self.label_gps) + self.gps_layout = QtWidgets.QHBoxLayout() + self.gps_layout.setObjectName("gps_layout") + self.path_gps = QtWidgets.QLineEdit(NewFlight) + sizePolicy = QtWidgets.QSizePolicy(QtWidgets.QSizePolicy.Minimum, QtWidgets.QSizePolicy.Preferred) + sizePolicy.setHorizontalStretch(2) + sizePolicy.setVerticalStretch(0) + sizePolicy.setHeightForWidth(self.path_gps.sizePolicy().hasHeightForWidth()) + self.path_gps.setSizePolicy(sizePolicy) + self.path_gps.setBaseSize(QtCore.QSize(200, 0)) + self.path_gps.setObjectName("path_gps") + self.gps_layout.addWidget(self.path_gps) + self.cb_gps_format = QtWidgets.QComboBox(NewFlight) + self.cb_gps_format.setObjectName("cb_gps_format") + self.gps_layout.addWidget(self.cb_gps_format) + self.browse_gps = QtWidgets.QToolButton(NewFlight) + sizePolicy = QtWidgets.QSizePolicy(QtWidgets.QSizePolicy.Maximum, QtWidgets.QSizePolicy.Preferred) + sizePolicy.setHorizontalStretch(0) + sizePolicy.setVerticalStretch(0) + sizePolicy.setHeightForWidth(self.browse_gps.sizePolicy().hasHeightForWidth()) + self.browse_gps.setSizePolicy(sizePolicy) + self.browse_gps.setMaximumSize(QtCore.QSize(16777215, 16777215)) + self.browse_gps.setBaseSize(QtCore.QSize(50, 0)) + self.browse_gps.setObjectName("browse_gps") + self.gps_layout.addWidget(self.browse_gps) + self.form_input_layout.setLayout(6, QtWidgets.QFormLayout.FieldRole, self.gps_layout) + self.verticalLayout.addLayout(self.form_input_layout) + spacerItem = QtWidgets.QSpacerItem(20, 40, QtWidgets.QSizePolicy.Minimum, QtWidgets.QSizePolicy.Expanding) + self.verticalLayout.addItem(spacerItem) + self.label_flight_param = QtWidgets.QLabel(NewFlight) + self.label_flight_param.setObjectName("label_flight_param") + self.verticalLayout.addWidget(self.label_flight_param) + self.flight_params = QtWidgets.QTableView(NewFlight) + self.flight_params.setObjectName("flight_params") + self.verticalLayout.addWidget(self.flight_params) + self.label_message = QtWidgets.QLabel(NewFlight) + self.label_message.setObjectName("label_message") + self.verticalLayout.addWidget(self.label_message) + self.buttons_dialog = QtWidgets.QDialogButtonBox(NewFlight) + self.buttons_dialog.setStandardButtons(QtWidgets.QDialogButtonBox.Cancel|QtWidgets.QDialogButtonBox.Ok) + self.buttons_dialog.setObjectName("buttons_dialog") + self.verticalLayout.addWidget(self.buttons_dialog) + self.label_name.setBuddy(self.text_name) + self.label_date.setBuddy(self.date_flight) + self.label_meter.setBuddy(self.combo_meter) + self.label_gravity.setBuddy(self.path_gravity) + self.label_gps.setBuddy(self.path_gps) + + self.retranslateUi(NewFlight) + self.buttons_dialog.rejected.connect(NewFlight.reject) + self.buttons_dialog.accepted.connect(NewFlight.accept) + QtCore.QMetaObject.connectSlotsByName(NewFlight) + NewFlight.setTabOrder(self.path_gravity, self.browse_gravity) + NewFlight.setTabOrder(self.browse_gravity, self.path_gps) + NewFlight.setTabOrder(self.path_gps, self.browse_gps) + + def retranslateUi(self, NewFlight): + _translate = QtCore.QCoreApplication.translate + NewFlight.setWindowTitle(_translate("NewFlight", "Add Flight")) + self.label_name.setText(_translate("NewFlight", "Flight Name (Reference)*")) + self.label_date.setText(_translate("NewFlight", "Flight Date")) + self.date_flight.setDisplayFormat(_translate("NewFlight", "yyyy-MM-dd")) + self.label_meter.setText(_translate("NewFlight", "Gravity Meter")) + self.label_uuid.setText(_translate("NewFlight", "Flight UUID")) + self.label_gravity.setText(_translate("NewFlight", "Gravity Data")) + self.browse_gravity.setToolTip(_translate("NewFlight", "Browse")) + self.browse_gravity.setStatusTip(_translate("NewFlight", "Browse")) + self.browse_gravity.setText(_translate("NewFlight", "...")) + self.label_gps.setText(_translate("NewFlight", "GPS Data")) + self.browse_gps.setToolTip(_translate("NewFlight", "Browse")) + self.browse_gps.setText(_translate("NewFlight", "...")) + self.label_flight_param.setText(_translate("NewFlight", "Flight Parameters")) + self.label_message.setText(_translate("NewFlight", "

*required fields

")) + +from dgp import resources_rc diff --git a/dgp/gui/ui/advanced_data_import.py b/dgp/gui/ui/advanced_data_import.py new file mode 100644 index 0000000..2b09719 --- /dev/null +++ b/dgp/gui/ui/advanced_data_import.py @@ -0,0 +1,231 @@ +# -*- coding: utf-8 -*- + +# Form implementation generated from reading ui file 'dgp/gui/ui\advanced_data_import.ui' +# +# Created by: PyQt5 UI code generator 5.9 +# +# WARNING! All changes made in this file will be lost! + +from PyQt5 import QtCore, QtGui, QtWidgets + +class Ui_AdvancedImportData(object): + def setupUi(self, AdvancedImportData): + AdvancedImportData.setObjectName("AdvancedImportData") + AdvancedImportData.resize(450, 418) + sizePolicy = QtWidgets.QSizePolicy(QtWidgets.QSizePolicy.Minimum, QtWidgets.QSizePolicy.Preferred) + sizePolicy.setHorizontalStretch(0) + sizePolicy.setVerticalStretch(0) + sizePolicy.setHeightForWidth(AdvancedImportData.sizePolicy().hasHeightForWidth()) + AdvancedImportData.setSizePolicy(sizePolicy) + AdvancedImportData.setSizeIncrement(QtCore.QSize(50, 0)) + icon = QtGui.QIcon() + icon.addPixmap(QtGui.QPixmap(":/icons/new_file.png"), QtGui.QIcon.Normal, QtGui.QIcon.Off) + AdvancedImportData.setWindowIcon(icon) + self.verticalLayout = QtWidgets.QVBoxLayout(AdvancedImportData) + self.verticalLayout.setContentsMargins(5, -1, 5, -1) + self.verticalLayout.setSpacing(0) + self.verticalLayout.setObjectName("verticalLayout") + self.group_data = QtWidgets.QGroupBox(AdvancedImportData) + sizePolicy = QtWidgets.QSizePolicy(QtWidgets.QSizePolicy.Minimum, QtWidgets.QSizePolicy.Preferred) + sizePolicy.setHorizontalStretch(0) + sizePolicy.setVerticalStretch(0) + sizePolicy.setHeightForWidth(self.group_data.sizePolicy().hasHeightForWidth()) + self.group_data.setSizePolicy(sizePolicy) + self.group_data.setTitle("") + self.group_data.setObjectName("group_data") + self.formLayout = QtWidgets.QFormLayout(self.group_data) + self.formLayout.setObjectName("formLayout") + self.label_data_path = QtWidgets.QLabel(self.group_data) + self.label_data_path.setObjectName("label_data_path") + self.formLayout.setWidget(0, QtWidgets.QFormLayout.LabelRole, self.label_data_path) + self.hbox_data_path = QtWidgets.QHBoxLayout() + self.hbox_data_path.setObjectName("hbox_data_path") + self.line_path = QtWidgets.QLineEdit(self.group_data) + sizePolicy = QtWidgets.QSizePolicy(QtWidgets.QSizePolicy.Expanding, QtWidgets.QSizePolicy.Preferred) + sizePolicy.setHorizontalStretch(0) + sizePolicy.setVerticalStretch(0) + sizePolicy.setHeightForWidth(self.line_path.sizePolicy().hasHeightForWidth()) + self.line_path.setSizePolicy(sizePolicy) + self.line_path.setReadOnly(True) + self.line_path.setObjectName("line_path") + self.hbox_data_path.addWidget(self.line_path) + self.btn_browse = QtWidgets.QToolButton(self.group_data) + sizePolicy = QtWidgets.QSizePolicy(QtWidgets.QSizePolicy.Minimum, QtWidgets.QSizePolicy.Minimum) + sizePolicy.setHorizontalStretch(0) + sizePolicy.setVerticalStretch(0) + sizePolicy.setHeightForWidth(self.btn_browse.sizePolicy().hasHeightForWidth()) + self.btn_browse.setSizePolicy(sizePolicy) + font = QtGui.QFont() + font.setPointSize(9) + self.btn_browse.setFont(font) + self.btn_browse.setObjectName("btn_browse") + self.hbox_data_path.addWidget(self.btn_browse) + self.formLayout.setLayout(0, QtWidgets.QFormLayout.FieldRole, self.hbox_data_path) + self.label_flight = QtWidgets.QLabel(self.group_data) + self.label_flight.setObjectName("label_flight") + self.formLayout.setWidget(1, QtWidgets.QFormLayout.LabelRole, self.label_flight) + self.combo_flights = QtWidgets.QComboBox(self.group_data) + sizePolicy = QtWidgets.QSizePolicy(QtWidgets.QSizePolicy.Preferred, QtWidgets.QSizePolicy.Minimum) + sizePolicy.setHorizontalStretch(0) + sizePolicy.setVerticalStretch(0) + sizePolicy.setHeightForWidth(self.combo_flights.sizePolicy().hasHeightForWidth()) + self.combo_flights.setSizePolicy(sizePolicy) + self.combo_flights.setObjectName("combo_flights") + self.formLayout.setWidget(1, QtWidgets.QFormLayout.FieldRole, self.combo_flights) + self.label_meter = QtWidgets.QLabel(self.group_data) + self.label_meter.setObjectName("label_meter") + self.formLayout.setWidget(2, QtWidgets.QFormLayout.LabelRole, self.label_meter) + self.combo_meters = QtWidgets.QComboBox(self.group_data) + sizePolicy = QtWidgets.QSizePolicy(QtWidgets.QSizePolicy.Preferred, QtWidgets.QSizePolicy.Minimum) + sizePolicy.setHorizontalStretch(0) + sizePolicy.setVerticalStretch(0) + sizePolicy.setHeightForWidth(self.combo_meters.sizePolicy().hasHeightForWidth()) + self.combo_meters.setSizePolicy(sizePolicy) + self.combo_meters.setObjectName("combo_meters") + self.formLayout.setWidget(2, QtWidgets.QFormLayout.FieldRole, self.combo_meters) + self.verticalLayout.addWidget(self.group_data) + spacerItem = QtWidgets.QSpacerItem(20, 20, QtWidgets.QSizePolicy.Minimum, QtWidgets.QSizePolicy.Fixed) + self.verticalLayout.addItem(spacerItem) + self.label_file_props = QtWidgets.QLabel(AdvancedImportData) + font = QtGui.QFont() + font.setPointSize(10) + self.label_file_props.setFont(font) + self.label_file_props.setTextInteractionFlags(QtCore.Qt.NoTextInteraction) + self.label_file_props.setObjectName("label_file_props") + self.verticalLayout.addWidget(self.label_file_props) + self.grid_info_area = QtWidgets.QGridLayout() + self.grid_info_area.setContentsMargins(5, -1, 5, 10) + self.grid_info_area.setObjectName("grid_info_area") + self.label_data_end = QtWidgets.QLabel(AdvancedImportData) + self.label_data_end.setObjectName("label_data_end") + self.grid_info_area.addWidget(self.label_data_end, 0, 2, 1, 1, QtCore.Qt.AlignHCenter) + self.label_line_count = QtWidgets.QLabel(AdvancedImportData) + self.label_line_count.setObjectName("label_line_count") + self.grid_info_area.addWidget(self.label_line_count, 4, 0, 1, 1, QtCore.Qt.AlignLeft) + self.field_line_count = QtWidgets.QLabel(AdvancedImportData) + self.field_line_count.setObjectName("field_line_count") + self.grid_info_area.addWidget(self.field_line_count, 4, 1, 1, 1, QtCore.Qt.AlignHCenter) + self.field_fsize = QtWidgets.QLabel(AdvancedImportData) + self.field_fsize.setObjectName("field_fsize") + self.grid_info_area.addWidget(self.field_fsize, 3, 1, 1, 1, QtCore.Qt.AlignHCenter) + self.check_trim = QtWidgets.QCheckBox(AdvancedImportData) + self.check_trim.setEnabled(False) + self.check_trim.setObjectName("check_trim") + self.grid_info_area.addWidget(self.check_trim, 1, 0, 1, 1) + self.dte_data_end = QtWidgets.QDateTimeEdit(AdvancedImportData) + self.dte_data_end.setEnabled(False) + self.dte_data_end.setObjectName("dte_data_end") + self.grid_info_area.addWidget(self.dte_data_end, 0, 3, 1, 1) + self.label_col_count = QtWidgets.QLabel(AdvancedImportData) + self.label_col_count.setObjectName("label_col_count") + self.grid_info_area.addWidget(self.label_col_count, 3, 2, 1, 1) + self.dte_data_start = QtWidgets.QDateTimeEdit(AdvancedImportData) + self.dte_data_start.setEnabled(False) + sizePolicy = QtWidgets.QSizePolicy(QtWidgets.QSizePolicy.Minimum, QtWidgets.QSizePolicy.Fixed) + sizePolicy.setHorizontalStretch(0) + sizePolicy.setVerticalStretch(0) + sizePolicy.setHeightForWidth(self.dte_data_start.sizePolicy().hasHeightForWidth()) + self.dte_data_start.setSizePolicy(sizePolicy) + self.dte_data_start.setObjectName("dte_data_start") + self.grid_info_area.addWidget(self.dte_data_start, 0, 1, 1, 1, QtCore.Qt.AlignHCenter) + self.label_data_start = QtWidgets.QLabel(AdvancedImportData) + self.label_data_start.setObjectName("label_data_start") + self.grid_info_area.addWidget(self.label_data_start, 0, 0, 1, 1) + self.label_file_size = QtWidgets.QLabel(AdvancedImportData) + self.label_file_size.setObjectName("label_file_size") + self.grid_info_area.addWidget(self.label_file_size, 3, 0, 1, 1, QtCore.Qt.AlignLeft) + self.field_col_count = QtWidgets.QLabel(AdvancedImportData) + self.field_col_count.setObjectName("field_col_count") + self.grid_info_area.addWidget(self.field_col_count, 3, 3, 1, 1, QtCore.Qt.AlignHCenter) + spacerItem1 = QtWidgets.QSpacerItem(20, 20, QtWidgets.QSizePolicy.Minimum, QtWidgets.QSizePolicy.Fixed) + self.grid_info_area.addItem(spacerItem1, 2, 0, 1, 1) + self.verticalLayout.addLayout(self.grid_info_area) + spacerItem2 = QtWidgets.QSpacerItem(20, 40, QtWidgets.QSizePolicy.Minimum, QtWidgets.QSizePolicy.Expanding) + self.verticalLayout.addItem(spacerItem2) + self.hbox_editcols = QtWidgets.QHBoxLayout() + self.hbox_editcols.setObjectName("hbox_editcols") + self.label_data_fmt = QtWidgets.QLabel(AdvancedImportData) + sizePolicy = QtWidgets.QSizePolicy(QtWidgets.QSizePolicy.Maximum, QtWidgets.QSizePolicy.Preferred) + sizePolicy.setHorizontalStretch(0) + sizePolicy.setVerticalStretch(0) + sizePolicy.setHeightForWidth(self.label_data_fmt.sizePolicy().hasHeightForWidth()) + self.label_data_fmt.setSizePolicy(sizePolicy) + self.label_data_fmt.setObjectName("label_data_fmt") + self.hbox_editcols.addWidget(self.label_data_fmt) + self.cb_data_fmt = QtWidgets.QComboBox(AdvancedImportData) + sizePolicy = QtWidgets.QSizePolicy(QtWidgets.QSizePolicy.Minimum, QtWidgets.QSizePolicy.Minimum) + sizePolicy.setHorizontalStretch(0) + sizePolicy.setVerticalStretch(0) + sizePolicy.setHeightForWidth(self.cb_data_fmt.sizePolicy().hasHeightForWidth()) + self.cb_data_fmt.setSizePolicy(sizePolicy) + self.cb_data_fmt.setObjectName("cb_data_fmt") + self.hbox_editcols.addWidget(self.cb_data_fmt) + spacerItem3 = QtWidgets.QSpacerItem(40, 20, QtWidgets.QSizePolicy.Maximum, QtWidgets.QSizePolicy.Minimum) + self.hbox_editcols.addItem(spacerItem3) + self.btn_edit_cols = QtWidgets.QPushButton(AdvancedImportData) + self.btn_edit_cols.setEnabled(False) + sizePolicy = QtWidgets.QSizePolicy(QtWidgets.QSizePolicy.Minimum, QtWidgets.QSizePolicy.Minimum) + sizePolicy.setHorizontalStretch(0) + sizePolicy.setVerticalStretch(0) + sizePolicy.setHeightForWidth(self.btn_edit_cols.sizePolicy().hasHeightForWidth()) + self.btn_edit_cols.setSizePolicy(sizePolicy) + font = QtGui.QFont() + font.setPointSize(9) + self.btn_edit_cols.setFont(font) + icon1 = QtGui.QIcon() + icon1.addPixmap(QtGui.QPixmap(":/images/assets/meter_config.png"), QtGui.QIcon.Normal, QtGui.QIcon.Off) + self.btn_edit_cols.setIcon(icon1) + self.btn_edit_cols.setObjectName("btn_edit_cols") + self.hbox_editcols.addWidget(self.btn_edit_cols) + self.verticalLayout.addLayout(self.hbox_editcols) + spacerItem4 = QtWidgets.QSpacerItem(20, 50, QtWidgets.QSizePolicy.Minimum, QtWidgets.QSizePolicy.MinimumExpanding) + self.verticalLayout.addItem(spacerItem4) + self.label_msg = QtWidgets.QLabel(AdvancedImportData) + self.label_msg.setText("") + self.label_msg.setObjectName("label_msg") + self.verticalLayout.addWidget(self.label_msg) + self.btn_dialog = QtWidgets.QDialogButtonBox(AdvancedImportData) + sizePolicy = QtWidgets.QSizePolicy(QtWidgets.QSizePolicy.Expanding, QtWidgets.QSizePolicy.Minimum) + sizePolicy.setHorizontalStretch(0) + sizePolicy.setVerticalStretch(0) + sizePolicy.setHeightForWidth(self.btn_dialog.sizePolicy().hasHeightForWidth()) + self.btn_dialog.setSizePolicy(sizePolicy) + self.btn_dialog.setOrientation(QtCore.Qt.Horizontal) + self.btn_dialog.setStandardButtons(QtWidgets.QDialogButtonBox.Cancel|QtWidgets.QDialogButtonBox.Ok) + self.btn_dialog.setCenterButtons(False) + self.btn_dialog.setObjectName("btn_dialog") + self.verticalLayout.addWidget(self.btn_dialog) + self.label_data_path.setBuddy(self.line_path) + self.label_flight.setBuddy(self.combo_flights) + self.label_meter.setBuddy(self.combo_meters) + self.label_data_end.setBuddy(self.dte_data_end) + self.label_data_start.setBuddy(self.dte_data_start) + self.label_data_fmt.setBuddy(self.cb_data_fmt) + + self.retranslateUi(AdvancedImportData) + self.btn_dialog.accepted.connect(AdvancedImportData.accept) + self.btn_dialog.rejected.connect(AdvancedImportData.reject) + QtCore.QMetaObject.connectSlotsByName(AdvancedImportData) + + def retranslateUi(self, AdvancedImportData): + _translate = QtCore.QCoreApplication.translate + AdvancedImportData.setWindowTitle(_translate("AdvancedImportData", "Advanced Import")) + self.label_data_path.setText(_translate("AdvancedImportData", "Path*")) + self.line_path.setPlaceholderText(_translate("AdvancedImportData", "Browse to File")) + self.btn_browse.setText(_translate("AdvancedImportData", "...")) + self.label_flight.setText(_translate("AdvancedImportData", "Flight")) + self.label_meter.setText(_translate("AdvancedImportData", "Meter")) + self.label_file_props.setText(_translate("AdvancedImportData", "File Properties:")) + self.label_data_end.setText(_translate("AdvancedImportData", "Data End")) + self.label_line_count.setText(_translate("AdvancedImportData", "Line Count")) + self.field_line_count.setText(_translate("AdvancedImportData", "0")) + self.field_fsize.setText(_translate("AdvancedImportData", "0 Mib")) + self.check_trim.setText(_translate("AdvancedImportData", "Trim")) + self.label_col_count.setText(_translate("AdvancedImportData", "Column Count:")) + self.label_data_start.setText(_translate("AdvancedImportData", "Data Start")) + self.label_file_size.setText(_translate("AdvancedImportData", "File Size (Mib)")) + self.field_col_count.setText(_translate("AdvancedImportData", "0")) + self.label_data_fmt.setText(_translate("AdvancedImportData", "Column Format:")) + self.btn_edit_cols.setText(_translate("AdvancedImportData", "Edit Columns")) + +from dgp import resources_rc diff --git a/dgp/gui/ui/data_import_dialog.py b/dgp/gui/ui/data_import_dialog.py new file mode 100644 index 0000000..4c4caf4 --- /dev/null +++ b/dgp/gui/ui/data_import_dialog.py @@ -0,0 +1,85 @@ +# -*- coding: utf-8 -*- + +# Form implementation generated from reading ui file 'dgp/gui/ui\data_import_dialog.ui' +# +# Created by: PyQt5 UI code generator 5.9 +# +# WARNING! All changes made in this file will be lost! + +from PyQt5 import QtCore, QtGui, QtWidgets + +class Ui_Dialog(object): + def setupUi(self, Dialog): + Dialog.setObjectName("Dialog") + Dialog.setWindowModality(QtCore.Qt.ApplicationModal) + Dialog.resize(418, 500) + sizePolicy = QtWidgets.QSizePolicy(QtWidgets.QSizePolicy.Fixed, QtWidgets.QSizePolicy.Fixed) + sizePolicy.setHorizontalStretch(0) + sizePolicy.setVerticalStretch(0) + sizePolicy.setHeightForWidth(Dialog.sizePolicy().hasHeightForWidth()) + Dialog.setSizePolicy(sizePolicy) + Dialog.setMinimumSize(QtCore.QSize(300, 500)) + Dialog.setMaximumSize(QtCore.QSize(600, 1200)) + icon = QtGui.QIcon() + icon.addPixmap(QtGui.QPixmap(":/images/assets/geoid_icon.png"), QtGui.QIcon.Normal, QtGui.QIcon.Off) + Dialog.setWindowIcon(icon) + self.gridLayout = QtWidgets.QGridLayout(Dialog) + self.gridLayout.setObjectName("gridLayout") + self.group_datatype = QtWidgets.QGroupBox(Dialog) + self.group_datatype.setObjectName("group_datatype") + self.verticalLayout = QtWidgets.QVBoxLayout(self.group_datatype) + self.verticalLayout.setObjectName("verticalLayout") + self.type_gravity = QtWidgets.QRadioButton(self.group_datatype) + self.type_gravity.setChecked(True) + self.type_gravity.setObjectName("type_gravity") + self.group_radiotype = QtWidgets.QButtonGroup(Dialog) + self.group_radiotype.setObjectName("group_radiotype") + self.group_radiotype.addButton(self.type_gravity) + self.verticalLayout.addWidget(self.type_gravity) + self.type_gps = QtWidgets.QRadioButton(self.group_datatype) + self.type_gps.setObjectName("type_gps") + self.group_radiotype.addButton(self.type_gps) + self.verticalLayout.addWidget(self.type_gps) + self.gridLayout.addWidget(self.group_datatype, 5, 0, 1, 1) + self.buttonBox = QtWidgets.QDialogButtonBox(Dialog) + self.buttonBox.setOrientation(QtCore.Qt.Horizontal) + self.buttonBox.setStandardButtons(QtWidgets.QDialogButtonBox.Cancel|QtWidgets.QDialogButtonBox.Ok) + self.buttonBox.setObjectName("buttonBox") + self.gridLayout.addWidget(self.buttonBox, 8, 0, 1, 3) + self.combo_flights = QtWidgets.QComboBox(Dialog) + self.combo_flights.setObjectName("combo_flights") + self.gridLayout.addWidget(self.combo_flights, 3, 0, 1, 1) + self.combo_meters = QtWidgets.QComboBox(Dialog) + self.combo_meters.setObjectName("combo_meters") + self.gridLayout.addWidget(self.combo_meters, 4, 0, 1, 1) + self.field_path = QtWidgets.QLineEdit(Dialog) + self.field_path.setReadOnly(True) + self.field_path.setObjectName("field_path") + self.gridLayout.addWidget(self.field_path, 1, 0, 1, 1) + self.tree_directory = QtWidgets.QTreeView(Dialog) + self.tree_directory.setObjectName("tree_directory") + self.gridLayout.addWidget(self.tree_directory, 7, 0, 1, 3) + self.button_browse = QtWidgets.QPushButton(Dialog) + self.button_browse.setObjectName("button_browse") + self.gridLayout.addWidget(self.button_browse, 1, 2, 1, 1) + self.label_3 = QtWidgets.QLabel(Dialog) + self.label_3.setObjectName("label_3") + self.gridLayout.addWidget(self.label_3, 3, 2, 1, 1) + self.label = QtWidgets.QLabel(Dialog) + self.label.setObjectName("label") + self.gridLayout.addWidget(self.label, 4, 2, 1, 1) + + self.retranslateUi(Dialog) + self.buttonBox.rejected.connect(Dialog.reject) + QtCore.QMetaObject.connectSlotsByName(Dialog) + + def retranslateUi(self, Dialog): + _translate = QtCore.QCoreApplication.translate + Dialog.setWindowTitle(_translate("Dialog", "Import Data")) + self.group_datatype.setTitle(_translate("Dialog", "Data Type")) + self.type_gravity.setText(_translate("Dialog", "&Gravity Data")) + self.type_gps.setText(_translate("Dialog", "G&PS Data")) + self.button_browse.setText(_translate("Dialog", "&Browse")) + self.label_3.setText(_translate("Dialog", "

Flight

")) + self.label.setText(_translate("Dialog", "

Meter

")) + diff --git a/dgp/gui/ui/edit_import_view.py b/dgp/gui/ui/edit_import_view.py new file mode 100644 index 0000000..f0a547f --- /dev/null +++ b/dgp/gui/ui/edit_import_view.py @@ -0,0 +1,110 @@ +# -*- coding: utf-8 -*- + +# Form implementation generated from reading ui file 'dgp/gui/ui\edit_import_view.ui' +# +# Created by: PyQt5 UI code generator 5.9 +# +# WARNING! All changes made in this file will be lost! + +from PyQt5 import QtCore, QtGui, QtWidgets + +class Ui_Dialog(object): + def setupUi(self, Dialog): + Dialog.setObjectName("Dialog") + Dialog.resize(304, 296) + sizePolicy = QtWidgets.QSizePolicy(QtWidgets.QSizePolicy.MinimumExpanding, QtWidgets.QSizePolicy.Preferred) + sizePolicy.setHorizontalStretch(0) + sizePolicy.setVerticalStretch(0) + sizePolicy.setHeightForWidth(Dialog.sizePolicy().hasHeightForWidth()) + Dialog.setSizePolicy(sizePolicy) + Dialog.setSizeGripEnabled(True) + Dialog.setModal(True) + self.verticalLayout = QtWidgets.QVBoxLayout(Dialog) + self.verticalLayout.setObjectName("verticalLayout") + self.label_instruction = QtWidgets.QLabel(Dialog) + self.label_instruction.setObjectName("label_instruction") + self.verticalLayout.addWidget(self.label_instruction) + self.hbox_tools = QtWidgets.QHBoxLayout() + self.hbox_tools.setObjectName("hbox_tools") + self.btn_autosize = QtWidgets.QToolButton(Dialog) + self.btn_autosize.setText("") + icon = QtGui.QIcon() + icon.addPixmap(QtGui.QPixmap(":/icons/AutosizeStretch_16x.png"), QtGui.QIcon.Normal, QtGui.QIcon.Off) + self.btn_autosize.setIcon(icon) + self.btn_autosize.setObjectName("btn_autosize") + self.hbox_tools.addWidget(self.btn_autosize) + self.chb_has_header = QtWidgets.QCheckBox(Dialog) + self.chb_has_header.setObjectName("chb_has_header") + self.hbox_tools.addWidget(self.chb_has_header) + self.label = QtWidgets.QLabel(Dialog) + self.label.setObjectName("label") + self.hbox_tools.addWidget(self.label, 0, QtCore.Qt.AlignRight) + self.cob_field_set = QtWidgets.QComboBox(Dialog) + self.cob_field_set.setObjectName("cob_field_set") + self.hbox_tools.addWidget(self.cob_field_set) + self.verticalLayout.addLayout(self.hbox_tools) + self.table_col_edit = QtWidgets.QTableView(Dialog) + sizePolicy = QtWidgets.QSizePolicy(QtWidgets.QSizePolicy.MinimumExpanding, QtWidgets.QSizePolicy.Expanding) + sizePolicy.setHorizontalStretch(0) + sizePolicy.setVerticalStretch(0) + sizePolicy.setHeightForWidth(self.table_col_edit.sizePolicy().hasHeightForWidth()) + self.table_col_edit.setSizePolicy(sizePolicy) + self.table_col_edit.setSizeAdjustPolicy(QtWidgets.QAbstractScrollArea.AdjustToContentsOnFirstShow) + self.table_col_edit.setEditTriggers(QtWidgets.QAbstractItemView.AnyKeyPressed|QtWidgets.QAbstractItemView.DoubleClicked|QtWidgets.QAbstractItemView.EditKeyPressed|QtWidgets.QAbstractItemView.SelectedClicked) + self.table_col_edit.setObjectName("table_col_edit") + self.table_col_edit.horizontalHeader().setVisible(True) + self.table_col_edit.horizontalHeader().setStretchLastSection(True) + self.verticalLayout.addWidget(self.table_col_edit) + self.label_msg = QtWidgets.QLabel(Dialog) + self.label_msg.setText("") + self.label_msg.setObjectName("label_msg") + self.verticalLayout.addWidget(self.label_msg) + self.hbox_dlg_btns = QtWidgets.QHBoxLayout() + self.hbox_dlg_btns.setObjectName("hbox_dlg_btns") + self.btn_reset = QtWidgets.QPushButton(Dialog) + sizePolicy = QtWidgets.QSizePolicy(QtWidgets.QSizePolicy.Maximum, QtWidgets.QSizePolicy.Preferred) + sizePolicy.setHorizontalStretch(0) + sizePolicy.setVerticalStretch(0) + sizePolicy.setHeightForWidth(self.btn_reset.sizePolicy().hasHeightForWidth()) + self.btn_reset.setSizePolicy(sizePolicy) + self.btn_reset.setObjectName("btn_reset") + self.hbox_dlg_btns.addWidget(self.btn_reset) + spacerItem = QtWidgets.QSpacerItem(40, 20, QtWidgets.QSizePolicy.Expanding, QtWidgets.QSizePolicy.Minimum) + self.hbox_dlg_btns.addItem(spacerItem) + self.btn_cancel = QtWidgets.QPushButton(Dialog) + sizePolicy = QtWidgets.QSizePolicy(QtWidgets.QSizePolicy.Minimum, QtWidgets.QSizePolicy.Preferred) + sizePolicy.setHorizontalStretch(0) + sizePolicy.setVerticalStretch(0) + sizePolicy.setHeightForWidth(self.btn_cancel.sizePolicy().hasHeightForWidth()) + self.btn_cancel.setSizePolicy(sizePolicy) + self.btn_cancel.setObjectName("btn_cancel") + self.hbox_dlg_btns.addWidget(self.btn_cancel) + self.btn_confirm = QtWidgets.QPushButton(Dialog) + sizePolicy = QtWidgets.QSizePolicy(QtWidgets.QSizePolicy.Minimum, QtWidgets.QSizePolicy.Preferred) + sizePolicy.setHorizontalStretch(0) + sizePolicy.setVerticalStretch(0) + sizePolicy.setHeightForWidth(self.btn_confirm.sizePolicy().hasHeightForWidth()) + self.btn_confirm.setSizePolicy(sizePolicy) + self.btn_confirm.setObjectName("btn_confirm") + self.hbox_dlg_btns.addWidget(self.btn_confirm) + self.verticalLayout.addLayout(self.hbox_dlg_btns) + + self.retranslateUi(Dialog) + self.btn_cancel.clicked.connect(Dialog.reject) + self.btn_confirm.clicked.connect(Dialog.accept) + self.btn_autosize.clicked.connect(self.table_col_edit.resizeColumnsToContents) + QtCore.QMetaObject.connectSlotsByName(Dialog) + + def retranslateUi(self, Dialog): + _translate = QtCore.QCoreApplication.translate + Dialog.setWindowTitle(_translate("Dialog", "Data Preview")) + self.label_instruction.setText(_translate("Dialog", "Double Click Column Headers to Change Order")) + self.btn_autosize.setToolTip(_translate("Dialog", "Autosize Column Widths")) + self.chb_has_header.setToolTip(_translate("Dialog", "Check to skip first line in file")) + self.chb_has_header.setText(_translate("Dialog", "Has header")) + self.label.setText(_translate("Dialog", "Field Set:")) + self.btn_reset.setText(_translate("Dialog", "Reset")) + self.btn_cancel.setText(_translate("Dialog", "Cancel")) + self.btn_confirm.setText(_translate("Dialog", "Confirm")) + +from dgp import resources_rc diff --git a/dgp/gui/ui/info_dialog.py b/dgp/gui/ui/info_dialog.py new file mode 100644 index 0000000..9e0271b --- /dev/null +++ b/dgp/gui/ui/info_dialog.py @@ -0,0 +1,34 @@ +# -*- coding: utf-8 -*- + +# Form implementation generated from reading ui file 'dgp/gui/ui\info_dialog.ui' +# +# Created by: PyQt5 UI code generator 5.9 +# +# WARNING! All changes made in this file will be lost! + +from PyQt5 import QtCore, QtGui, QtWidgets + +class Ui_InfoDialog(object): + def setupUi(self, InfoDialog): + InfoDialog.setObjectName("InfoDialog") + InfoDialog.resize(213, 331) + self.verticalLayout = QtWidgets.QVBoxLayout(InfoDialog) + self.verticalLayout.setObjectName("verticalLayout") + self.table_info = QtWidgets.QTableView(InfoDialog) + self.table_info.setObjectName("table_info") + self.verticalLayout.addWidget(self.table_info) + self.buttonBox = QtWidgets.QDialogButtonBox(InfoDialog) + self.buttonBox.setOrientation(QtCore.Qt.Horizontal) + self.buttonBox.setStandardButtons(QtWidgets.QDialogButtonBox.Ok) + self.buttonBox.setObjectName("buttonBox") + self.verticalLayout.addWidget(self.buttonBox) + + self.retranslateUi(InfoDialog) + self.buttonBox.accepted.connect(InfoDialog.accept) + self.buttonBox.rejected.connect(InfoDialog.reject) + QtCore.QMetaObject.connectSlotsByName(InfoDialog) + + def retranslateUi(self, InfoDialog): + _translate = QtCore.QCoreApplication.translate + InfoDialog.setWindowTitle(_translate("InfoDialog", "Info")) + diff --git a/dgp/gui/ui/main_window.py b/dgp/gui/ui/main_window.py new file mode 100644 index 0000000..d8e7502 --- /dev/null +++ b/dgp/gui/ui/main_window.py @@ -0,0 +1,343 @@ +# -*- coding: utf-8 -*- + +# Form implementation generated from reading ui file 'dgp/gui/ui\main_window.ui' +# +# Created by: PyQt5 UI code generator 5.9 +# +# WARNING! All changes made in this file will be lost! + +from PyQt5 import QtCore, QtGui, QtWidgets + +class Ui_MainWindow(object): + def setupUi(self, MainWindow): + MainWindow.setObjectName("MainWindow") + MainWindow.resize(1490, 1135) + MainWindow.setMinimumSize(QtCore.QSize(800, 600)) + icon = QtGui.QIcon() + icon.addPixmap(QtGui.QPixmap(":/images/geoid"), QtGui.QIcon.Normal, QtGui.QIcon.Off) + MainWindow.setWindowIcon(icon) + MainWindow.setTabShape(QtWidgets.QTabWidget.Triangular) + self.centralwidget = QtWidgets.QWidget(MainWindow) + self.centralwidget.setObjectName("centralwidget") + self.horizontalLayout = QtWidgets.QHBoxLayout(self.centralwidget) + self.horizontalLayout.setContentsMargins(0, 0, 0, 0) + self.horizontalLayout.setObjectName("horizontalLayout") + self.tab_workspace = TabWorkspace(self.centralwidget) + self.tab_workspace.setObjectName("tab_workspace") + self.horizontalLayout.addWidget(self.tab_workspace) + MainWindow.setCentralWidget(self.centralwidget) + self.menubar = QtWidgets.QMenuBar(MainWindow) + self.menubar.setGeometry(QtCore.QRect(0, 0, 1490, 21)) + self.menubar.setObjectName("menubar") + self.menuFile = QtWidgets.QMenu(self.menubar) + self.menuFile.setObjectName("menuFile") + self.menuHelp = QtWidgets.QMenu(self.menubar) + self.menuHelp.setObjectName("menuHelp") + self.menuView = QtWidgets.QMenu(self.menubar) + self.menuView.setObjectName("menuView") + self.menuProject = QtWidgets.QMenu(self.menubar) + self.menuProject.setObjectName("menuProject") + MainWindow.setMenuBar(self.menubar) + self.statusbar = QtWidgets.QStatusBar(MainWindow) + self.statusbar.setEnabled(True) + self.statusbar.setAutoFillBackground(True) + self.statusbar.setObjectName("statusbar") + MainWindow.setStatusBar(self.statusbar) + self.project_dock = QtWidgets.QDockWidget(MainWindow) + self.project_dock.setEnabled(True) + sizePolicy = QtWidgets.QSizePolicy(QtWidgets.QSizePolicy.MinimumExpanding, QtWidgets.QSizePolicy.Preferred) + sizePolicy.setHorizontalStretch(0) + sizePolicy.setVerticalStretch(0) + sizePolicy.setHeightForWidth(self.project_dock.sizePolicy().hasHeightForWidth()) + self.project_dock.setSizePolicy(sizePolicy) + self.project_dock.setMinimumSize(QtCore.QSize(359, 262)) + self.project_dock.setMaximumSize(QtCore.QSize(524287, 524287)) + self.project_dock.setAllowedAreas(QtCore.Qt.LeftDockWidgetArea|QtCore.Qt.RightDockWidgetArea) + self.project_dock.setObjectName("project_dock") + self.project_dock_contents = QtWidgets.QWidget() + sizePolicy = QtWidgets.QSizePolicy(QtWidgets.QSizePolicy.Preferred, QtWidgets.QSizePolicy.Preferred) + sizePolicy.setHorizontalStretch(0) + sizePolicy.setVerticalStretch(0) + sizePolicy.setHeightForWidth(self.project_dock_contents.sizePolicy().hasHeightForWidth()) + self.project_dock_contents.setSizePolicy(sizePolicy) + self.project_dock_contents.setObjectName("project_dock_contents") + self.verticalLayout_4 = QtWidgets.QVBoxLayout(self.project_dock_contents) + self.verticalLayout_4.setContentsMargins(0, 0, 0, 0) + self.verticalLayout_4.setSpacing(3) + self.verticalLayout_4.setObjectName("verticalLayout_4") + self.project_dock_grid = QtWidgets.QGridLayout() + self.project_dock_grid.setContentsMargins(5, -1, -1, -1) + self.project_dock_grid.setSpacing(3) + self.project_dock_grid.setObjectName("project_dock_grid") + self.label_prj_info = QtWidgets.QLabel(self.project_dock_contents) + self.label_prj_info.setObjectName("label_prj_info") + self.project_dock_grid.addWidget(self.label_prj_info, 0, 0, 1, 1) + self.prj_add_flight = QtWidgets.QPushButton(self.project_dock_contents) + icon1 = QtGui.QIcon() + icon1.addPixmap(QtGui.QPixmap(":/icons/airborne"), QtGui.QIcon.Normal, QtGui.QIcon.Off) + self.prj_add_flight.setIcon(icon1) + self.prj_add_flight.setObjectName("prj_add_flight") + self.project_dock_grid.addWidget(self.prj_add_flight, 2, 0, 1, 1) + self.prj_add_meter = QtWidgets.QPushButton(self.project_dock_contents) + icon2 = QtGui.QIcon() + icon2.addPixmap(QtGui.QPixmap(":/icons/meter_config.png"), QtGui.QIcon.Normal, QtGui.QIcon.Off) + self.prj_add_meter.setIcon(icon2) + self.prj_add_meter.setObjectName("prj_add_meter") + self.project_dock_grid.addWidget(self.prj_add_meter, 2, 1, 1, 1) + self.prj_import_gps = QtWidgets.QPushButton(self.project_dock_contents) + icon3 = QtGui.QIcon() + icon3.addPixmap(QtGui.QPixmap(":/icons/gps"), QtGui.QIcon.Normal, QtGui.QIcon.Off) + self.prj_import_gps.setIcon(icon3) + self.prj_import_gps.setObjectName("prj_import_gps") + self.project_dock_grid.addWidget(self.prj_import_gps, 4, 0, 1, 1) + self.prj_import_grav = QtWidgets.QPushButton(self.project_dock_contents) + icon4 = QtGui.QIcon() + icon4.addPixmap(QtGui.QPixmap(":/icons/gravity"), QtGui.QIcon.Normal, QtGui.QIcon.Off) + self.prj_import_grav.setIcon(icon4) + self.prj_import_grav.setIconSize(QtCore.QSize(16, 16)) + self.prj_import_grav.setObjectName("prj_import_grav") + self.project_dock_grid.addWidget(self.prj_import_grav, 4, 1, 1, 1) + self.contextual_tree = QtWidgets.QTreeView(self.project_dock_contents) + self.contextual_tree.setDragEnabled(False) + self.contextual_tree.setDragDropOverwriteMode(False) + self.contextual_tree.setDragDropMode(QtWidgets.QAbstractItemView.InternalMove) + self.contextual_tree.setDefaultDropAction(QtCore.Qt.MoveAction) + self.contextual_tree.setUniformRowHeights(True) + self.contextual_tree.setObjectName("contextual_tree") + self.contextual_tree.header().setVisible(False) + self.project_dock_grid.addWidget(self.contextual_tree, 1, 0, 1, 2) + self.verticalLayout_4.addLayout(self.project_dock_grid) + self.project_dock.setWidget(self.project_dock_contents) + MainWindow.addDockWidget(QtCore.Qt.DockWidgetArea(1), self.project_dock) + self.toolbar = QtWidgets.QToolBar(MainWindow) + self.toolbar.setFloatable(False) + self.toolbar.setObjectName("toolbar") + MainWindow.addToolBar(QtCore.Qt.TopToolBarArea, self.toolbar) + self.info_dock = QtWidgets.QDockWidget(MainWindow) + sizePolicy = QtWidgets.QSizePolicy(QtWidgets.QSizePolicy.Preferred, QtWidgets.QSizePolicy.Preferred) + sizePolicy.setHorizontalStretch(0) + sizePolicy.setVerticalStretch(0) + sizePolicy.setHeightForWidth(self.info_dock.sizePolicy().hasHeightForWidth()) + self.info_dock.setSizePolicy(sizePolicy) + self.info_dock.setMinimumSize(QtCore.QSize(644, 246)) + self.info_dock.setMaximumSize(QtCore.QSize(524287, 246)) + self.info_dock.setSizeIncrement(QtCore.QSize(0, 0)) + self.info_dock.setFeatures(QtWidgets.QDockWidget.AllDockWidgetFeatures) + self.info_dock.setAllowedAreas(QtCore.Qt.BottomDockWidgetArea|QtCore.Qt.TopDockWidgetArea) + self.info_dock.setObjectName("info_dock") + self.console_dock_contents = QtWidgets.QWidget() + sizePolicy = QtWidgets.QSizePolicy(QtWidgets.QSizePolicy.Preferred, QtWidgets.QSizePolicy.Fixed) + sizePolicy.setHorizontalStretch(0) + sizePolicy.setVerticalStretch(0) + sizePolicy.setHeightForWidth(self.console_dock_contents.sizePolicy().hasHeightForWidth()) + self.console_dock_contents.setSizePolicy(sizePolicy) + self.console_dock_contents.setObjectName("console_dock_contents") + self.gridLayout = QtWidgets.QGridLayout(self.console_dock_contents) + self.gridLayout.setContentsMargins(5, 0, 0, 0) + self.gridLayout.setSpacing(0) + self.gridLayout.setObjectName("gridLayout") + self.console_frame = QtWidgets.QFrame(self.console_dock_contents) + sizePolicy = QtWidgets.QSizePolicy(QtWidgets.QSizePolicy.Expanding, QtWidgets.QSizePolicy.Preferred) + sizePolicy.setHorizontalStretch(2) + sizePolicy.setVerticalStretch(0) + sizePolicy.setHeightForWidth(self.console_frame.sizePolicy().hasHeightForWidth()) + self.console_frame.setSizePolicy(sizePolicy) + self.console_frame.setSizeIncrement(QtCore.QSize(2, 0)) + self.console_frame.setFrameShape(QtWidgets.QFrame.StyledPanel) + self.console_frame.setFrameShadow(QtWidgets.QFrame.Raised) + self.console_frame.setObjectName("console_frame") + self.verticalLayout_2 = QtWidgets.QVBoxLayout(self.console_frame) + self.verticalLayout_2.setContentsMargins(6, 0, 0, 0) + self.verticalLayout_2.setSpacing(5) + self.verticalLayout_2.setObjectName("verticalLayout_2") + self.text_console = QtWidgets.QTextEdit(self.console_frame) + sizePolicy = QtWidgets.QSizePolicy(QtWidgets.QSizePolicy.Expanding, QtWidgets.QSizePolicy.MinimumExpanding) + sizePolicy.setHorizontalStretch(0) + sizePolicy.setVerticalStretch(0) + sizePolicy.setHeightForWidth(self.text_console.sizePolicy().hasHeightForWidth()) + self.text_console.setSizePolicy(sizePolicy) + self.text_console.setMinimumSize(QtCore.QSize(0, 100)) + self.text_console.setMaximumSize(QtCore.QSize(16777215, 16777215)) + palette = QtGui.QPalette() + brush = QtGui.QBrush(QtGui.QColor(160, 160, 160)) + brush.setStyle(QtCore.Qt.SolidPattern) + palette.setBrush(QtGui.QPalette.Active, QtGui.QPalette.Base, brush) + brush = QtGui.QBrush(QtGui.QColor(160, 160, 160)) + brush.setStyle(QtCore.Qt.SolidPattern) + palette.setBrush(QtGui.QPalette.Inactive, QtGui.QPalette.Base, brush) + brush = QtGui.QBrush(QtGui.QColor(240, 240, 240)) + brush.setStyle(QtCore.Qt.SolidPattern) + palette.setBrush(QtGui.QPalette.Disabled, QtGui.QPalette.Base, brush) + self.text_console.setPalette(palette) + self.text_console.setAutoFillBackground(True) + self.text_console.setFrameShape(QtWidgets.QFrame.StyledPanel) + self.text_console.setReadOnly(True) + self.text_console.setObjectName("text_console") + self.verticalLayout_2.addWidget(self.text_console) + self.console_btns_layout = QtWidgets.QGridLayout() + self.console_btns_layout.setObjectName("console_btns_layout") + self.combo_console_verbosity = QtWidgets.QComboBox(self.console_frame) + self.combo_console_verbosity.setObjectName("combo_console_verbosity") + self.combo_console_verbosity.addItem("") + self.combo_console_verbosity.addItem("") + self.combo_console_verbosity.addItem("") + self.combo_console_verbosity.addItem("") + self.combo_console_verbosity.addItem("") + self.console_btns_layout.addWidget(self.combo_console_verbosity, 0, 2, 1, 1) + self.btn_clear_console = QtWidgets.QPushButton(self.console_frame) + self.btn_clear_console.setMaximumSize(QtCore.QSize(100, 16777215)) + self.btn_clear_console.setObjectName("btn_clear_console") + self.console_btns_layout.addWidget(self.btn_clear_console, 0, 0, 1, 1) + self.label_logging_level = QtWidgets.QLabel(self.console_frame) + self.label_logging_level.setObjectName("label_logging_level") + self.console_btns_layout.addWidget(self.label_logging_level, 0, 1, 1, 1) + self.verticalLayout_2.addLayout(self.console_btns_layout) + self.gridLayout.addWidget(self.console_frame, 0, 1, 1, 1) + self.text_info = QtWidgets.QPlainTextEdit(self.console_dock_contents) + self.text_info.setEnabled(True) + sizePolicy = QtWidgets.QSizePolicy(QtWidgets.QSizePolicy.Minimum, QtWidgets.QSizePolicy.Expanding) + sizePolicy.setHorizontalStretch(1) + sizePolicy.setVerticalStretch(0) + sizePolicy.setHeightForWidth(self.text_info.sizePolicy().hasHeightForWidth()) + self.text_info.setSizePolicy(sizePolicy) + self.text_info.setMinimumSize(QtCore.QSize(0, 100)) + self.text_info.setSizeIncrement(QtCore.QSize(1, 0)) + self.text_info.setReadOnly(True) + self.text_info.setPlainText("") + self.text_info.setObjectName("text_info") + self.gridLayout.addWidget(self.text_info, 0, 0, 1, 1) + self.info_dock.setWidget(self.console_dock_contents) + MainWindow.addDockWidget(QtCore.Qt.DockWidgetArea(8), self.info_dock) + self.actionDocumentation = QtWidgets.QAction(MainWindow) + self.actionDocumentation.setObjectName("actionDocumentation") + self.action_exit = QtWidgets.QAction(MainWindow) + self.action_exit.setObjectName("action_exit") + self.action_project_dock = QtWidgets.QAction(MainWindow) + self.action_project_dock.setCheckable(True) + self.action_project_dock.setChecked(True) + self.action_project_dock.setObjectName("action_project_dock") + self.action_tool_dock = QtWidgets.QAction(MainWindow) + self.action_tool_dock.setCheckable(True) + self.action_tool_dock.setChecked(False) + self.action_tool_dock.setObjectName("action_tool_dock") + self.action_file_new = QtWidgets.QAction(MainWindow) + icon5 = QtGui.QIcon() + icon5.addPixmap(QtGui.QPixmap(":/icons/new_file.png"), QtGui.QIcon.Normal, QtGui.QIcon.Off) + self.action_file_new.setIcon(icon5) + self.action_file_new.setObjectName("action_file_new") + self.action_file_open = QtWidgets.QAction(MainWindow) + icon6 = QtGui.QIcon() + icon6.addPixmap(QtGui.QPixmap(":/icons/folder_open.png"), QtGui.QIcon.Normal, QtGui.QIcon.Off) + self.action_file_open.setIcon(icon6) + self.action_file_open.setObjectName("action_file_open") + self.action_file_save = QtWidgets.QAction(MainWindow) + icon7 = QtGui.QIcon() + icon7.addPixmap(QtGui.QPixmap(":/icons/save_project.png"), QtGui.QIcon.Normal, QtGui.QIcon.Off) + self.action_file_save.setIcon(icon7) + self.action_file_save.setObjectName("action_file_save") + self.action_add_flight = QtWidgets.QAction(MainWindow) + self.action_add_flight.setIcon(icon1) + self.action_add_flight.setObjectName("action_add_flight") + self.action_add_meter = QtWidgets.QAction(MainWindow) + self.action_add_meter.setIcon(icon2) + self.action_add_meter.setObjectName("action_add_meter") + self.action_project_info = QtWidgets.QAction(MainWindow) + icon8 = QtGui.QIcon() + icon8.addPixmap(QtGui.QPixmap(":/icons/dgs"), QtGui.QIcon.Normal, QtGui.QIcon.Off) + self.action_project_info.setIcon(icon8) + self.action_project_info.setObjectName("action_project_info") + self.action_info_dock = QtWidgets.QAction(MainWindow) + self.action_info_dock.setCheckable(True) + self.action_info_dock.setChecked(True) + self.action_info_dock.setObjectName("action_info_dock") + self.action_import_gps = QtWidgets.QAction(MainWindow) + self.action_import_gps.setIcon(icon3) + self.action_import_gps.setObjectName("action_import_gps") + self.action_import_grav = QtWidgets.QAction(MainWindow) + self.action_import_grav.setIcon(icon4) + self.action_import_grav.setObjectName("action_import_grav") + self.menuFile.addAction(self.action_file_new) + self.menuFile.addAction(self.action_file_open) + self.menuFile.addAction(self.action_file_save) + self.menuFile.addSeparator() + self.menuFile.addAction(self.action_exit) + self.menuHelp.addAction(self.actionDocumentation) + self.menuView.addAction(self.action_project_dock) + self.menuView.addAction(self.action_tool_dock) + self.menuView.addAction(self.action_info_dock) + self.menuProject.addAction(self.action_import_grav) + self.menuProject.addAction(self.action_import_gps) + self.menuProject.addAction(self.action_add_flight) + self.menuProject.addAction(self.action_add_meter) + self.menuProject.addAction(self.action_project_info) + self.menubar.addAction(self.menuFile.menuAction()) + self.menubar.addAction(self.menuProject.menuAction()) + self.menubar.addAction(self.menuView.menuAction()) + self.menubar.addAction(self.menuHelp.menuAction()) + self.toolbar.addAction(self.action_file_new) + self.toolbar.addAction(self.action_file_open) + self.toolbar.addAction(self.action_file_save) + self.toolbar.addSeparator() + self.toolbar.addAction(self.action_add_flight) + self.toolbar.addAction(self.action_add_meter) + self.toolbar.addAction(self.action_import_gps) + self.toolbar.addAction(self.action_import_grav) + self.toolbar.addSeparator() + + self.retranslateUi(MainWindow) + self.action_project_dock.toggled['bool'].connect(self.project_dock.setVisible) + self.project_dock.visibilityChanged['bool'].connect(self.action_project_dock.setChecked) + self.action_info_dock.toggled['bool'].connect(self.info_dock.setVisible) + self.info_dock.visibilityChanged['bool'].connect(self.action_info_dock.setChecked) + QtCore.QMetaObject.connectSlotsByName(MainWindow) + + def retranslateUi(self, MainWindow): + _translate = QtCore.QCoreApplication.translate + MainWindow.setWindowTitle(_translate("MainWindow", "Dynamic Gravity Processor")) + self.menuFile.setTitle(_translate("MainWindow", "File")) + self.menuHelp.setTitle(_translate("MainWindow", "Help")) + self.menuView.setTitle(_translate("MainWindow", "Panels")) + self.menuProject.setTitle(_translate("MainWindow", "Project")) + self.project_dock.setWindowTitle(_translate("MainWindow", "Project")) + self.label_prj_info.setText(_translate("MainWindow", "Project Tree:")) + self.prj_add_flight.setText(_translate("MainWindow", "Add Flight")) + self.prj_add_meter.setText(_translate("MainWindow", "Add Meter")) + self.prj_import_gps.setText(_translate("MainWindow", "Import GPS")) + self.prj_import_grav.setText(_translate("MainWindow", "Import Gravity")) + self.toolbar.setWindowTitle(_translate("MainWindow", "Toolbar")) + self.info_dock.setWindowTitle(_translate("MainWindow", "Info/Console")) + self.combo_console_verbosity.setItemText(0, _translate("MainWindow", "Debug")) + self.combo_console_verbosity.setItemText(1, _translate("MainWindow", "Info")) + self.combo_console_verbosity.setItemText(2, _translate("MainWindow", "Warning")) + self.combo_console_verbosity.setItemText(3, _translate("MainWindow", "Error")) + self.combo_console_verbosity.setItemText(4, _translate("MainWindow", "Critical")) + self.btn_clear_console.setText(_translate("MainWindow", "Clear")) + self.label_logging_level.setText(_translate("MainWindow", "

Logging Level:

")) + self.text_info.setPlaceholderText(_translate("MainWindow", "Selection Info")) + self.actionDocumentation.setText(_translate("MainWindow", "Documentation")) + self.actionDocumentation.setShortcut(_translate("MainWindow", "F1")) + self.action_exit.setText(_translate("MainWindow", "Exit")) + self.action_exit.setShortcut(_translate("MainWindow", "Ctrl+Q")) + self.action_project_dock.setText(_translate("MainWindow", "Project")) + self.action_project_dock.setShortcut(_translate("MainWindow", "Alt+1")) + self.action_tool_dock.setText(_translate("MainWindow", "Tools")) + self.action_tool_dock.setShortcut(_translate("MainWindow", "Alt+2")) + self.action_file_new.setText(_translate("MainWindow", "New Project...")) + self.action_file_new.setShortcut(_translate("MainWindow", "Ctrl+Shift+N")) + self.action_file_open.setText(_translate("MainWindow", "Open Project")) + self.action_file_open.setShortcut(_translate("MainWindow", "Ctrl+Shift+O")) + self.action_file_save.setText(_translate("MainWindow", "Save Project")) + self.action_file_save.setShortcut(_translate("MainWindow", "Ctrl+S")) + self.action_add_flight.setText(_translate("MainWindow", "Add Flight")) + self.action_add_flight.setShortcut(_translate("MainWindow", "Ctrl+Shift+F")) + self.action_add_meter.setText(_translate("MainWindow", "Add Meter")) + self.action_add_meter.setShortcut(_translate("MainWindow", "Ctrl+Shift+M")) + self.action_project_info.setText(_translate("MainWindow", "Project Info...")) + self.action_project_info.setShortcut(_translate("MainWindow", "Ctrl+I")) + self.action_info_dock.setText(_translate("MainWindow", "Console")) + self.action_info_dock.setShortcut(_translate("MainWindow", "Alt+3")) + self.action_import_gps.setText(_translate("MainWindow", "Import GPS")) + self.action_import_grav.setText(_translate("MainWindow", "Import Gravity")) + +from dgp.gui.widgets import TabWorkspace +from dgp import resources_rc diff --git a/dgp/gui/ui/project_dialog.py b/dgp/gui/ui/project_dialog.py new file mode 100644 index 0000000..4a7d80e --- /dev/null +++ b/dgp/gui/ui/project_dialog.py @@ -0,0 +1,194 @@ +# -*- coding: utf-8 -*- + +# Form implementation generated from reading ui file 'dgp/gui/ui\project_dialog.ui' +# +# Created by: PyQt5 UI code generator 5.9 +# +# WARNING! All changes made in this file will be lost! + +from PyQt5 import QtCore, QtGui, QtWidgets + +class Ui_Dialog(object): + def setupUi(self, Dialog): + Dialog.setObjectName("Dialog") + Dialog.resize(900, 450) + sizePolicy = QtWidgets.QSizePolicy(QtWidgets.QSizePolicy.MinimumExpanding, QtWidgets.QSizePolicy.MinimumExpanding) + sizePolicy.setHorizontalStretch(0) + sizePolicy.setVerticalStretch(0) + sizePolicy.setHeightForWidth(Dialog.sizePolicy().hasHeightForWidth()) + Dialog.setSizePolicy(sizePolicy) + Dialog.setMinimumSize(QtCore.QSize(0, 0)) + Dialog.setMaximumSize(QtCore.QSize(16777215, 16777215)) + Dialog.setSizeIncrement(QtCore.QSize(50, 50)) + icon = QtGui.QIcon() + icon.addPixmap(QtGui.QPixmap(":/icons/dgs"), QtGui.QIcon.Normal, QtGui.QIcon.Off) + Dialog.setWindowIcon(icon) + Dialog.setAccessibleName("") + Dialog.setSizeGripEnabled(True) + Dialog.setModal(False) + self.horizontalLayout_4 = QtWidgets.QHBoxLayout(Dialog) + self.horizontalLayout_4.setContentsMargins(0, -1, -1, -1) + self.horizontalLayout_4.setObjectName("horizontalLayout_4") + self.prj_type_list = QtWidgets.QListWidget(Dialog) + sizePolicy = QtWidgets.QSizePolicy(QtWidgets.QSizePolicy.Maximum, QtWidgets.QSizePolicy.Minimum) + sizePolicy.setHorizontalStretch(0) + sizePolicy.setVerticalStretch(0) + sizePolicy.setHeightForWidth(self.prj_type_list.sizePolicy().hasHeightForWidth()) + self.prj_type_list.setSizePolicy(sizePolicy) + self.prj_type_list.setMinimumSize(QtCore.QSize(0, 0)) + self.prj_type_list.setMaximumSize(QtCore.QSize(16777215, 16777215)) + self.prj_type_list.setFrameShadow(QtWidgets.QFrame.Raised) + self.prj_type_list.setLineWidth(1) + self.prj_type_list.setIconSize(QtCore.QSize(20, 20)) + self.prj_type_list.setViewMode(QtWidgets.QListView.ListMode) + self.prj_type_list.setUniformItemSizes(True) + self.prj_type_list.setObjectName("prj_type_list") + self.horizontalLayout_4.addWidget(self.prj_type_list) + self.vbox_main = QtWidgets.QVBoxLayout() + self.vbox_main.setSpacing(3) + self.vbox_main.setObjectName("vbox_main") + self.formLayout = QtWidgets.QFormLayout() + self.formLayout.setSizeConstraint(QtWidgets.QLayout.SetNoConstraint) + self.formLayout.setFieldGrowthPolicy(QtWidgets.QFormLayout.ExpandingFieldsGrow) + self.formLayout.setLabelAlignment(QtCore.Qt.AlignLeading|QtCore.Qt.AlignLeft|QtCore.Qt.AlignVCenter) + self.formLayout.setFormAlignment(QtCore.Qt.AlignRight|QtCore.Qt.AlignTop|QtCore.Qt.AlignTrailing) + self.formLayout.setVerticalSpacing(3) + self.formLayout.setObjectName("formLayout") + self.label_name = QtWidgets.QLabel(Dialog) + sizePolicy = QtWidgets.QSizePolicy(QtWidgets.QSizePolicy.Preferred, QtWidgets.QSizePolicy.MinimumExpanding) + sizePolicy.setHorizontalStretch(0) + sizePolicy.setVerticalStretch(0) + sizePolicy.setHeightForWidth(self.label_name.sizePolicy().hasHeightForWidth()) + self.label_name.setSizePolicy(sizePolicy) + self.label_name.setMinimumSize(QtCore.QSize(0, 25)) + self.label_name.setObjectName("label_name") + self.formLayout.setWidget(0, QtWidgets.QFormLayout.LabelRole, self.label_name) + self.hbox_project_name = QtWidgets.QHBoxLayout() + self.hbox_project_name.setObjectName("hbox_project_name") + self.prj_name = QtWidgets.QLineEdit(Dialog) + sizePolicy = QtWidgets.QSizePolicy(QtWidgets.QSizePolicy.MinimumExpanding, QtWidgets.QSizePolicy.Minimum) + sizePolicy.setHorizontalStretch(0) + sizePolicy.setVerticalStretch(1) + sizePolicy.setHeightForWidth(self.prj_name.sizePolicy().hasHeightForWidth()) + self.prj_name.setSizePolicy(sizePolicy) + self.prj_name.setMinimumSize(QtCore.QSize(0, 25)) + font = QtGui.QFont() + font.setPointSize(8) + self.prj_name.setFont(font) + self.prj_name.setObjectName("prj_name") + self.hbox_project_name.addWidget(self.prj_name) + self.formLayout.setLayout(0, QtWidgets.QFormLayout.FieldRole, self.hbox_project_name) + self.label_dir = QtWidgets.QLabel(Dialog) + sizePolicy = QtWidgets.QSizePolicy(QtWidgets.QSizePolicy.Preferred, QtWidgets.QSizePolicy.MinimumExpanding) + sizePolicy.setHorizontalStretch(0) + sizePolicy.setVerticalStretch(0) + sizePolicy.setHeightForWidth(self.label_dir.sizePolicy().hasHeightForWidth()) + self.label_dir.setSizePolicy(sizePolicy) + self.label_dir.setMinimumSize(QtCore.QSize(0, 25)) + self.label_dir.setObjectName("label_dir") + self.formLayout.setWidget(1, QtWidgets.QFormLayout.LabelRole, self.label_dir) + self.hbox_form_directory = QtWidgets.QHBoxLayout() + self.hbox_form_directory.setContentsMargins(-1, 0, -1, 0) + self.hbox_form_directory.setSpacing(2) + self.hbox_form_directory.setObjectName("hbox_form_directory") + self.prj_dir = QtWidgets.QLineEdit(Dialog) + sizePolicy = QtWidgets.QSizePolicy(QtWidgets.QSizePolicy.MinimumExpanding, QtWidgets.QSizePolicy.Minimum) + sizePolicy.setHorizontalStretch(0) + sizePolicy.setVerticalStretch(1) + sizePolicy.setHeightForWidth(self.prj_dir.sizePolicy().hasHeightForWidth()) + self.prj_dir.setSizePolicy(sizePolicy) + self.prj_dir.setMinimumSize(QtCore.QSize(0, 25)) + font = QtGui.QFont() + font.setPointSize(8) + self.prj_dir.setFont(font) + self.prj_dir.setFrame(True) + self.prj_dir.setAlignment(QtCore.Qt.AlignLeading|QtCore.Qt.AlignLeft|QtCore.Qt.AlignVCenter) + self.prj_dir.setClearButtonEnabled(False) + self.prj_dir.setObjectName("prj_dir") + self.hbox_form_directory.addWidget(self.prj_dir) + self.prj_browse = QtWidgets.QToolButton(Dialog) + sizePolicy = QtWidgets.QSizePolicy(QtWidgets.QSizePolicy.Minimum, QtWidgets.QSizePolicy.Minimum) + sizePolicy.setHorizontalStretch(0) + sizePolicy.setVerticalStretch(0) + sizePolicy.setHeightForWidth(self.prj_browse.sizePolicy().hasHeightForWidth()) + self.prj_browse.setSizePolicy(sizePolicy) + self.prj_browse.setObjectName("prj_browse") + self.hbox_form_directory.addWidget(self.prj_browse) + self.formLayout.setLayout(1, QtWidgets.QFormLayout.FieldRole, self.hbox_form_directory) + self.label_required = QtWidgets.QLabel(Dialog) + font = QtGui.QFont() + font.setBold(True) + font.setWeight(75) + self.label_required.setFont(font) + self.label_required.setAlignment(QtCore.Qt.AlignRight|QtCore.Qt.AlignTrailing|QtCore.Qt.AlignVCenter) + self.label_required.setObjectName("label_required") + self.formLayout.setWidget(2, QtWidgets.QFormLayout.FieldRole, self.label_required) + self.horizontalLayout_2 = QtWidgets.QHBoxLayout() + self.horizontalLayout_2.setObjectName("horizontalLayout_2") + spacerItem = QtWidgets.QSpacerItem(40, 20, QtWidgets.QSizePolicy.Expanding, QtWidgets.QSizePolicy.Minimum) + self.horizontalLayout_2.addItem(spacerItem) + self.prj_properties = QtWidgets.QPushButton(Dialog) + self.prj_properties.setEnabled(False) + self.prj_properties.setObjectName("prj_properties") + self.horizontalLayout_2.addWidget(self.prj_properties) + self.formLayout.setLayout(3, QtWidgets.QFormLayout.FieldRole, self.horizontalLayout_2) + self.vbox_main.addLayout(self.formLayout) + self.label_msg = QtWidgets.QLabel(Dialog) + self.label_msg.setText("") + self.label_msg.setObjectName("label_msg") + self.vbox_main.addWidget(self.label_msg, 0, QtCore.Qt.AlignLeft) + self.vbox_advanced_controls = QtWidgets.QVBoxLayout() + self.vbox_advanced_controls.setObjectName("vbox_advanced_controls") + self.widget_advanced = QtWidgets.QWidget(Dialog) + self.widget_advanced.setEnabled(False) + self.widget_advanced.setObjectName("widget_advanced") + self.vbox_advanced_controls.addWidget(self.widget_advanced) + self.vbox_main.addLayout(self.vbox_advanced_controls) + self.hbox_dialog_buttons = QtWidgets.QHBoxLayout() + self.hbox_dialog_buttons.setObjectName("hbox_dialog_buttons") + spacerItem1 = QtWidgets.QSpacerItem(40, 20, QtWidgets.QSizePolicy.Expanding, QtWidgets.QSizePolicy.Minimum) + self.hbox_dialog_buttons.addItem(spacerItem1) + self.btn_cancel = QtWidgets.QPushButton(Dialog) + sizePolicy = QtWidgets.QSizePolicy(QtWidgets.QSizePolicy.Maximum, QtWidgets.QSizePolicy.Fixed) + sizePolicy.setHorizontalStretch(0) + sizePolicy.setVerticalStretch(0) + sizePolicy.setHeightForWidth(self.btn_cancel.sizePolicy().hasHeightForWidth()) + self.btn_cancel.setSizePolicy(sizePolicy) + self.btn_cancel.setMinimumSize(QtCore.QSize(0, 0)) + self.btn_cancel.setMaximumSize(QtCore.QSize(16777215, 16777215)) + self.btn_cancel.setObjectName("btn_cancel") + self.hbox_dialog_buttons.addWidget(self.btn_cancel) + self.btn_create = QtWidgets.QPushButton(Dialog) + sizePolicy = QtWidgets.QSizePolicy(QtWidgets.QSizePolicy.Maximum, QtWidgets.QSizePolicy.Fixed) + sizePolicy.setHorizontalStretch(0) + sizePolicy.setVerticalStretch(0) + sizePolicy.setHeightForWidth(self.btn_create.sizePolicy().hasHeightForWidth()) + self.btn_create.setSizePolicy(sizePolicy) + self.btn_create.setMinimumSize(QtCore.QSize(0, 0)) + self.btn_create.setMaximumSize(QtCore.QSize(16777215, 16777215)) + self.btn_create.setObjectName("btn_create") + self.hbox_dialog_buttons.addWidget(self.btn_create) + self.vbox_main.addLayout(self.hbox_dialog_buttons) + self.horizontalLayout_4.addLayout(self.vbox_main) + self.label_name.setBuddy(self.prj_name) + self.label_dir.setBuddy(self.prj_dir) + + self.retranslateUi(Dialog) + self.btn_cancel.clicked.connect(Dialog.reject) + self.prj_properties.clicked.connect(self.widget_advanced.show) + self.btn_create.clicked.connect(Dialog.accept) + QtCore.QMetaObject.connectSlotsByName(Dialog) + Dialog.setTabOrder(self.btn_create, self.prj_type_list) + + def retranslateUi(self, Dialog): + _translate = QtCore.QCoreApplication.translate + Dialog.setWindowTitle(_translate("Dialog", "Create New Project")) + self.label_name.setText(_translate("Dialog", "Project Name:*")) + self.label_dir.setText(_translate("Dialog", "Project Directory:*")) + self.prj_browse.setText(_translate("Dialog", "...")) + self.label_required.setText(_translate("Dialog", " required fields*")) + self.prj_properties.setText(_translate("Dialog", "Properties")) + self.btn_cancel.setText(_translate("Dialog", "Cancel")) + self.btn_create.setText(_translate("Dialog", "Create")) + +from dgp import resources_rc diff --git a/dgp/gui/ui/splash_screen.py b/dgp/gui/ui/splash_screen.py new file mode 100644 index 0000000..ddee8aa --- /dev/null +++ b/dgp/gui/ui/splash_screen.py @@ -0,0 +1,126 @@ +# -*- coding: utf-8 -*- + +# Form implementation generated from reading ui file 'dgp/gui/ui\splash_screen.ui' +# +# Created by: PyQt5 UI code generator 5.9 +# +# WARNING! All changes made in this file will be lost! + +from PyQt5 import QtCore, QtGui, QtWidgets + +class Ui_Launcher(object): + def setupUi(self, Launcher): + Launcher.setObjectName("Launcher") + Launcher.resize(604, 620) + sizePolicy = QtWidgets.QSizePolicy(QtWidgets.QSizePolicy.MinimumExpanding, QtWidgets.QSizePolicy.MinimumExpanding) + sizePolicy.setHorizontalStretch(0) + sizePolicy.setVerticalStretch(0) + sizePolicy.setHeightForWidth(Launcher.sizePolicy().hasHeightForWidth()) + Launcher.setSizePolicy(sizePolicy) + icon = QtGui.QIcon() + icon.addPixmap(QtGui.QPixmap(":/images/geoid"), QtGui.QIcon.Normal, QtGui.QIcon.Off) + Launcher.setWindowIcon(icon) + self.verticalLayout = QtWidgets.QVBoxLayout(Launcher) + self.verticalLayout.setObjectName("verticalLayout") + self.label_title = QtWidgets.QLabel(Launcher) + self.label_title.setObjectName("label_title") + self.verticalLayout.addWidget(self.label_title) + self.label_globeico = QtWidgets.QLabel(Launcher) + self.label_globeico.setFrameShape(QtWidgets.QFrame.NoFrame) + self.label_globeico.setText("") + self.label_globeico.setPixmap(QtGui.QPixmap(":/images/geoid")) + self.label_globeico.setScaledContents(True) + self.label_globeico.setAlignment(QtCore.Qt.AlignCenter) + self.label_globeico.setObjectName("label_globeico") + self.verticalLayout.addWidget(self.label_globeico, 0, QtCore.Qt.AlignHCenter|QtCore.Qt.AlignVCenter) + self.label_license = QtWidgets.QLabel(Launcher) + self.label_license.setObjectName("label_license") + self.verticalLayout.addWidget(self.label_license) + self.group_recent = QtWidgets.QGroupBox(Launcher) + self.group_recent.setTitle("") + self.group_recent.setFlat(True) + self.group_recent.setCheckable(False) + self.group_recent.setObjectName("group_recent") + self.horizontalLayout_2 = QtWidgets.QHBoxLayout(self.group_recent) + self.horizontalLayout_2.setContentsMargins(0, -1, 0, 0) + self.horizontalLayout_2.setObjectName("horizontalLayout_2") + self.label_recent = QtWidgets.QLabel(self.group_recent) + sizePolicy = QtWidgets.QSizePolicy(QtWidgets.QSizePolicy.Preferred, QtWidgets.QSizePolicy.Preferred) + sizePolicy.setHorizontalStretch(2) + sizePolicy.setVerticalStretch(0) + sizePolicy.setHeightForWidth(self.label_recent.sizePolicy().hasHeightForWidth()) + self.label_recent.setSizePolicy(sizePolicy) + self.label_recent.setObjectName("label_recent") + self.horizontalLayout_2.addWidget(self.label_recent) + self.btn_clear_recent = QtWidgets.QPushButton(self.group_recent) + self.btn_clear_recent.setBaseSize(QtCore.QSize(100, 0)) + self.btn_clear_recent.setObjectName("btn_clear_recent") + self.horizontalLayout_2.addWidget(self.btn_clear_recent) + self.verticalLayout.addWidget(self.group_recent) + self.list_projects = QtWidgets.QListWidget(Launcher) + sizePolicy = QtWidgets.QSizePolicy(QtWidgets.QSizePolicy.Expanding, QtWidgets.QSizePolicy.MinimumExpanding) + sizePolicy.setHorizontalStretch(0) + sizePolicy.setVerticalStretch(0) + sizePolicy.setHeightForWidth(self.list_projects.sizePolicy().hasHeightForWidth()) + self.list_projects.setSizePolicy(sizePolicy) + self.list_projects.setObjectName("list_projects") + self.verticalLayout.addWidget(self.list_projects) + self.group_btns = QtWidgets.QGroupBox(Launcher) + self.group_btns.setTitle("") + self.group_btns.setAlignment(QtCore.Qt.AlignCenter) + self.group_btns.setFlat(True) + self.group_btns.setObjectName("group_btns") + self.horizontalLayout = QtWidgets.QHBoxLayout(self.group_btns) + self.horizontalLayout.setContentsMargins(0, -1, 0, -1) + self.horizontalLayout.setSpacing(3) + self.horizontalLayout.setObjectName("horizontalLayout") + self.btn_newproject = QtWidgets.QPushButton(self.group_btns) + self.btn_newproject.setObjectName("btn_newproject") + self.horizontalLayout.addWidget(self.btn_newproject) + self.btn_browse = QtWidgets.QPushButton(self.group_btns) + self.btn_browse.setInputMethodHints(QtCore.Qt.ImhNone) + self.btn_browse.setObjectName("btn_browse") + self.horizontalLayout.addWidget(self.btn_browse) + spacerItem = QtWidgets.QSpacerItem(40, 20, QtWidgets.QSizePolicy.Expanding, QtWidgets.QSizePolicy.Minimum) + self.horizontalLayout.addItem(spacerItem) + self.label_error = QtWidgets.QLabel(self.group_btns) + self.label_error.setMinimumSize(QtCore.QSize(40, 0)) + self.label_error.setStyleSheet("color: rgb(255, 0, 0)") + self.label_error.setText("") + self.label_error.setObjectName("label_error") + self.horizontalLayout.addWidget(self.label_error) + spacerItem1 = QtWidgets.QSpacerItem(40, 20, QtWidgets.QSizePolicy.Expanding, QtWidgets.QSizePolicy.Minimum) + self.horizontalLayout.addItem(spacerItem1) + self.dialog_buttons = QtWidgets.QDialogButtonBox(self.group_btns) + sizePolicy = QtWidgets.QSizePolicy(QtWidgets.QSizePolicy.Minimum, QtWidgets.QSizePolicy.Fixed) + sizePolicy.setHorizontalStretch(0) + sizePolicy.setVerticalStretch(0) + sizePolicy.setHeightForWidth(self.dialog_buttons.sizePolicy().hasHeightForWidth()) + self.dialog_buttons.setSizePolicy(sizePolicy) + self.dialog_buttons.setInputMethodHints(QtCore.Qt.ImhPreferUppercase) + self.dialog_buttons.setStandardButtons(QtWidgets.QDialogButtonBox.Cancel|QtWidgets.QDialogButtonBox.Ok) + self.dialog_buttons.setObjectName("dialog_buttons") + self.horizontalLayout.addWidget(self.dialog_buttons) + self.verticalLayout.addWidget(self.group_btns) + self.actionbrowse = QtWidgets.QAction(Launcher) + self.actionbrowse.setObjectName("actionbrowse") + + self.retranslateUi(Launcher) + self.dialog_buttons.rejected.connect(Launcher.reject) + self.dialog_buttons.accepted.connect(Launcher.accept) + QtCore.QMetaObject.connectSlotsByName(Launcher) + + def retranslateUi(self, Launcher): + _translate = QtCore.QCoreApplication.translate + Launcher.setWindowTitle(_translate("Launcher", "Dynamic Gravity Processor")) + self.label_title.setText(_translate("Launcher", "

Dynamic Gravity Processor

")) + self.label_license.setText(_translate("Launcher", "

Version 0.1

Licensed under the Apache-2.0 License

")) + self.label_recent.setText(_translate("Launcher", "Open Recent Project:")) + self.btn_clear_recent.setText(_translate("Launcher", "Clear Recent")) + self.btn_newproject.setText(_translate("Launcher", "&New Project")) + self.btn_browse.setWhatsThis(_translate("Launcher", "Browse for a project")) + self.btn_browse.setText(_translate("Launcher", "&Browse...")) + self.actionbrowse.setText(_translate("Launcher", "browse")) + self.actionbrowse.setShortcut(_translate("Launcher", "Ctrl+O")) + +from dgp import resources_rc From bee08c5a71abef8605a22887357c165e48595866 Mon Sep 17 00:00:00 2001 From: chris Date: Fri, 12 Jan 2018 13:05:09 -0500 Subject: [PATCH 053/236] ENH: Minor changes to leap_seconds function - format of dates supplied through 'date' keyword can be specified via the 'dateformat' keyword - moved leap second table out of function - converted items in leap second table to tuples of datetimes - moved leap second lookup to a separate memoized function - reformed doc strings to NumPy format --- dgp/lib/time_utils.py | 166 +++++++++++++++++++++++---------------- dgp/lib/transform.py | 0 tests/test_time_utils.py | 6 +- 3 files changed, 103 insertions(+), 69 deletions(-) create mode 100644 dgp/lib/transform.py diff --git a/dgp/lib/time_utils.py b/dgp/lib/time_utils.py index 0946db1..a8367c3 100644 --- a/dgp/lib/time_utils.py +++ b/dgp/lib/time_utils.py @@ -1,10 +1,31 @@ -import datetime +from datetime import datetime, timedelta import pandas as pd import collections +from functools import lru_cache + +leap_second_table = [(datetime(1980, 1, 1), datetime(1981, 7, 1)), + (datetime(1981, 7, 1), datetime(1982, 7, 1)), + (datetime(1982, 7, 1), datetime(1983, 7, 1)), + (datetime(1983, 7, 1), datetime(1985, 7, 1)), + (datetime(1985, 7, 1), datetime(1988, 1, 1)), + (datetime(1988, 1, 1), datetime(1990, 1, 1)), + (datetime(1990, 1, 1), datetime(1991, 1, 1)), + (datetime(1991, 1, 1), datetime(1992, 7, 1)), + (datetime(1992, 7, 1), datetime(1993, 7, 1)), + (datetime(1993, 7, 1), datetime(1994, 7, 1)), + (datetime(1994, 7, 1), datetime(1996, 1, 1)), + (datetime(1996, 1, 1), datetime(1997, 7, 1)), + (datetime(1997, 7, 1), datetime(1999, 1, 1)), + (datetime(1999, 1, 1), datetime(2006, 1, 1)), + (datetime(2006, 1, 1), datetime(2009, 1, 1)), + (datetime(2009, 1, 1), datetime(2012, 7, 1)), + (datetime(2012, 7, 1), datetime(2015, 7, 1)), + (datetime(2015, 7, 1), datetime(2017, 1, 1))] + def datetime_to_sow(dt): def _to_sow(dt): - delta = dt - datetime.datetime(1980, 1, 6) + delta = dt - datetime(1980, 1, 6) week = delta.days // 7 sow = (delta.days % 7) * 86400. + delta.seconds + delta.microseconds * 1e-6 return week, sow @@ -17,23 +38,39 @@ def _to_sow(dt): else: return _to_sow(dt) + def convert_gps_time(gpsweek, gpsweekseconds, format='unix'): """ - convert_gps_time :: (String -> String) -> Float + Converts a GPS time format (weeks + seconds since 6 Jan 1980) to a UNIX + timestamp (seconds since 1 Jan 1970) without correcting for UTC leap + seconds. - Converts a GPS time format (weeks + seconds since 6 Jan 1980) to a UNIX timestamp - (seconds since 1 Jan 1970) without correcting for UTC leap seconds. + Static values gps_delta and gpsweek_cf are defined by the below functions + (optimization) gps_delta is the time difference (in seconds) between UNIX + time and GPS time. - Static values gps_delta and gpsweek_cf are defined by the below functions (optimization) - gps_delta is the time difference (in seconds) between UNIX time and GPS time. gps_delta = (dt.datetime(1980, 1, 6) - dt.datetime(1970, 1, 1)).total_seconds() gpsweek_cf is the coefficient to convert weeks to seconds gpsweek_cf = 7 * 24 * 60 * 60 # 604800 - :param gpsweek: Number of weeks since beginning of GPS time (1980-01-06 00:00:00) - :param gpsweekseconds: Number of seconds since the GPS week parameter - :return: (float) unix timestamp (number of seconds since 1970-01-01 00:00:00) + Parameters + ---------- + gpsweek : int + Number of weeks since beginning of GPS time (1980-01-06 00:00:00) + + gpsweekseconds : float + Number of seconds since the GPS week parameter + + format : {'unix', 'datetime'} + Format of returned value + + Returns + ------- + float or :obj:`datetime` + UNIX timestamp (number of seconds since 1970-01-01 00:00:00) without + leapseconds subtracted if 'unix' is specified for format. + Otherwise, a :obj:`datetime` is returned. """ # GPS time begins 1980 Jan 6 00:00, UNIX time begins 1970 Jan 1 00:00 gps_delta = 315964800.0 @@ -49,45 +86,56 @@ def convert_gps_time(gpsweek, gpsweekseconds, format='unix'): if format == 'unix': return timestamp elif format == 'datetime': - return datetime.datetime(1970, 1, 1) + pd.to_timedelta(timestamp, unit='s') + return datetime(1970, 1, 1) + pd.to_timedelta(timestamp, unit='s') + def leap_seconds(**kwargs): """ - leapseconds :: Variable type -> Integer + Look-up for the number of leap seconds for a given date - Look-up for the number of leapseconds for a given date. + Parameters + ---------- + week : int, optional + Number of weeks since beginning of GPS time (1980-01-06 00:00:00) - :param week: Number of weeks since beginning of GPS time (1980-01-06 00:00:00) - :param seconds: If week is specified, then seconds of week since the - beginning of Sunday of that week, otherwise, Unix time in - seconds since January 1, 1970 UTC. - :param date: Date either in the format MM-DD-YYYY or MM/DD/YYYY - :param datetime: datetime-like - :return: (integer) Number of accumulated leap seconds as of the given date. - """ + seconds : float, optional + If week is specified, then seconds of week since the beginning of + Sunday of that week, otherwise, Unix time in seconds since + January 1, 1970 UTC. + + date : :obj:`str`, optional + Date string in the format specified by dateformat. + + dateformat : :obj:`str`, optional + Format of the date string if date is used. Default: '%m-%d-%Y' + .. _Format codes: + https://docs.python.org/3/library/datetime.html#strftime-and-strptime-behavior + + datetime : :obj:`datetime` + + Returns + ------- + int + Number of accumulated leap seconds as of the given date. + """ if 'seconds' in kwargs: - # GPS week + seconds of week if 'week' in kwargs: - dt = (datetime.datetime(1980, 1, 6) + - datetime.timedelta(weeks=kwargs['week']) + - datetime.timedelta(seconds=kwargs['seconds'])) + dt = (datetime(1980, 1, 6) + + timedelta(weeks=kwargs['week']) + + timedelta(seconds=kwargs['seconds'])) else: - # TO DO: Check for value out of bounds? - # week not specified, assume Unix time in seconds - dt = (datetime.datetime(1970, 1, 1) + - datetime.timedelta(seconds=kwargs['seconds'])) + # TODO Check for value out of bounds? + dt = (datetime(1970, 1, 1) + + timedelta(seconds=kwargs['seconds'])) elif 'date' in kwargs: - d = kwargs['date'].split('-') - if len(d) != 3: - d = kwargs['date'].split('/') - if len(d) != 3: - raise ValueError('Date not correctly formatted. ' - 'Expect MM-DD-YYYY or MM/DD/YYYY. Got: {date}' - .format(date=kwargs['date'])) + if 'dateformat' in kwargs: + fmt = kwargs['dateformat'] + else: + fmt = '%m-%d-%Y' - dt = datetime.datetime(int(d[2]), int(d[0]), int(d[1])) + dt = datetime.strptime(kwargs['date'], fmt) elif 'datetime' in kwargs: dt = kwargs['datetime'] @@ -97,41 +145,27 @@ def leap_seconds(**kwargs): 'number and seconds of week, Unix time in seconds ' 'since January 1, 1970 UTC, or datetime.') - ls_table = [(1980,1,1,1981,7,1),\ - (1981,7,1,1982,7,1),\ - (1982,7,1,1983,7,1),\ - (1983,7,1,1985,7,1),\ - (1985,7,1,1988,1,1),\ - (1988,1,1,1990,1,1),\ - (1990,1,1,1991,1,1),\ - (1991,1,1,1992,7,1),\ - (1992,7,1,1993,7,1),\ - (1993,7,1,1994,7,1),\ - (1994,7,1,1996,1,1),\ - (1996,1,1,1997,7,1),\ - (1997,7,1,1999,1,1),\ - (1999,1,1,2006,1,1),\ - (2006,1,1,2009,1,1),\ - (2009,1,1,2012,7,1),\ - (2012,7,1,2015,7,1),\ - (2015,7,1,2017,1,1)] - - leap_seconds = 0 - for entry in ls_table: - if (dt >= datetime.datetime(entry[0], entry[1], entry[2]) and - dt < datetime.datetime(entry[3],entry[4],entry[5])): - break + return _get_leap_seconds(dt) + +@lru_cache(maxsize=1000) +def _get_leap_seconds(dt): + ls = 0 + for entry in leap_second_table: + if entry[0] <= dt < entry[1]: + break else: - leap_seconds = leap_seconds + 1 + ls += 1 + return ls - return leap_seconds def datenum_to_datetime(timestamp): + raise NotImplementedError() + if isinstance(timestamp, pd.Series): - return (timestamp.astype(int).map(datetime.datetime.fromordinal) + + return (timestamp.astype(int).map(datetime.fromordinal) + pd.to_timedelta(timestamp % 1, unit='D') - pd.to_timedelta('366 days')) else: - return (datetime.datetime.fromordinal(int(timestamp) - 366) + - datetime.timedelta(days=timestamp % 1)) + return (datetime.fromordinal(int(timestamp) - 366) + + timedelta(days=timestamp % 1)) diff --git a/dgp/lib/transform.py b/dgp/lib/transform.py new file mode 100644 index 0000000..e69de29 diff --git a/tests/test_time_utils.py b/tests/test_time_utils.py index 80d8246..957cddf 100644 --- a/tests/test_time_utils.py +++ b/tests/test_time_utils.py @@ -25,7 +25,7 @@ def test_leap_seconds(self): res_unix = tu.leap_seconds(seconds=unixtime) res_datetime = tu.leap_seconds(datetime=dt) res_date1 = tu.leap_seconds(date=date1) - res_date2 = tu.leap_seconds(date=date2) + res_date2 = tu.leap_seconds(date=date2, dateformat='%m/%d/%Y') self.assertEqual(expected1, res_gps) self.assertEqual(expected1, res_unix) @@ -34,10 +34,10 @@ def test_leap_seconds(self): self.assertEqual(expected2, res_date2) with self.assertRaises(ValueError): - res_date3 = tu.leap_seconds(date=date3) + tu.leap_seconds(date=date3) with self.assertRaises(ValueError): - res = tu.leap_seconds(minutes=dt) + tu.leap_seconds(minutes=dt) def test_convert_gps_time(self): gpsweek = 1959 From 7b2435bba03c291895e1ed24db2e03565f000575 Mon Sep 17 00:00:00 2001 From: chris Date: Fri, 26 Jan 2018 12:44:15 -0500 Subject: [PATCH 054/236] ENH: initial transform implementation MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit Added graph nodes for latitude correction, Eötvös correction, free-air correction, derivatives, and some basic operations. --- dgp/lib/eotvos.py | 183 ------------------------- dgp/lib/transform/__init__.py | 0 dgp/lib/transform/derivatives.py | 60 +++++++++ dgp/lib/transform/filters.py | 82 ++++++++++++ dgp/lib/transform/gravity.py | 223 +++++++++++++++++++++++++++++++ dgp/lib/transform/operators.py | 42 ++++++ examples/filter_graph.py | 96 +++++++++++++ requirements.txt | 1 + tests/test_eotvos.py | 47 ------- tests/test_graphs.py | 220 ++++++++++++++++++++++++++++++ 10 files changed, 724 insertions(+), 230 deletions(-) delete mode 100644 dgp/lib/eotvos.py create mode 100644 dgp/lib/transform/__init__.py create mode 100644 dgp/lib/transform/derivatives.py create mode 100644 dgp/lib/transform/filters.py create mode 100644 dgp/lib/transform/gravity.py create mode 100644 dgp/lib/transform/operators.py create mode 100644 examples/filter_graph.py delete mode 100644 tests/test_eotvos.py create mode 100644 tests/test_graphs.py diff --git a/dgp/lib/eotvos.py b/dgp/lib/eotvos.py deleted file mode 100644 index c8a0042..0000000 --- a/dgp/lib/eotvos.py +++ /dev/null @@ -1,183 +0,0 @@ -# coding: utf-8 -# This file is part of DynamicGravityProcessor (https://github.com/DynamicGravitySystems/DGP). -# License is Apache v2 - -import numpy as np -from numpy import array - - -def derivative(y: array, datarate, edge_order=None): - """ - Based on Matlab function 'd' Created by Sandra Martinka, August 2001 - Function to numerically estimate the nth time derivative of y - In both cases of n len(dy) = len(y) - 2 :: One element from each end is lost in calculation - usage dy = derivative(y, n, datarate) - - :param y: Array input - :param datarate: Scalar data sampling rate in Hz - :param edge_order: nth time derivative 1, 2 or None. If None return tuple of first and second order time derivatives - :return: nth time derivative of y - """ - if edge_order is None: - d1 = derivative(y, 1, datarate) - d2 = derivative(y, 2, datarate) - return d1, d2 - - if edge_order == 1: - dy = (y[2:] - y[0:-2]) * (datarate / 2) - return dy - elif edge_order == 2: - dy = ((y[0:-2] - 2 * y[1:-1]) + y[2:]) * (np.power(datarate, 2)) - return dy - else: - return ValueError('Invalid value for parameter n {1 or 2}') - - -def calc_eotvos(lat: array, lon: array, ht: array, datarate: float, derivation_func=derivative, - **kwargs): - """ - calc_eotvos: Calculate Eotvos Gravity Corrections - - Based on Matlab function 'calc_eotvos_full Created by Sandra Preaux, NGS, NOAA August 24, 2009 - - References - ---------- - Harlan 1968, "Eotvos Corrections for Airborne Gravimetry" JGR 73,n14 - - Parameters - ---------- - lat : Array - Array of geodetic latitude in decimal degrees - lon : Array - Array of longitude in decimal degrees - ht : Array - Array of ellipsoidal height in meters - datarate : Float (Scalar) - Scalar data rate in Hz - derivation_func : Callable (Array, Scalar, Int) - Callable function used to calculate first and second order time derivatives. - kwargs - a : float - Specify semi-major axis - ecc : float - Eccentricity - - Returns - ------- - 6-Tuple (Array, ...) - Eotvos values in mgals - Tuple(E: Array, rdoubledot, angular acc of ref frame, coriolis, centrifugal, centrifugal acc of earth) - """ - - # eotvos.derivative function trims the ends of the input by 1, so we need to apply bound to - # some arrays - if derivation_func is not np.gradient: - bounds = slice(1, -1) - else: - bounds = slice(None, None, None) - - # Constants - # a = 6378137.0 # Default semi-major axis - a = kwargs.get('a', 6378137.0) # Default semi-major axis - b = 6356752.3142 # Default semi-minor axis - ecc = kwargs.get('ecc', (a - b) / a) # Eccentricity - - We = 0.00007292115 # sidereal rotation rate, radians/sec - mps2mgal = 100000 # m/s/s to mgal - - # Convert lat/lon in degrees to radians - lat = np.deg2rad(lat) - lon = np.deg2rad(lon) - - dlat = derivation_func(lat, datarate, edge_order=1) - ddlat = derivation_func(lat, datarate, edge_order=2) - dlon = derivation_func(lon, datarate, edge_order=1) - ddlon = derivation_func(lon, datarate, edge_order=2) - dht = derivation_func(ht, datarate, edge_order=1) - ddht = derivation_func(ht, datarate, edge_order=2) - - # Calculate sin(lat), cos(lat), sin(2*lat), and cos(2*lat) - sin_lat = np.sin(lat[bounds]) - cos_lat = np.cos(lat[bounds]) - sin_2lat = np.sin(2.0 * lat[bounds]) - cos_2lat = np.cos(2.0 * lat[bounds]) - - # Calculate the r' and its derivatives - r_prime = a * (1.0-ecc * sin_lat * sin_lat) - dr_prime = -a * dlat * ecc * sin_2lat - ddr_prime = -a * ddlat * ecc * sin_2lat - 2.0 * a * dlat * dlat * ecc * cos_2lat - - # Calculate the deviation from the normal and its derivatives - D = np.arctan(ecc * sin_2lat) - dD = 2.0 * dlat * ecc * cos_2lat - ddD = 2.0 * ddlat * ecc * cos_2lat - 4.0 * dlat * dlat * ecc * sin_2lat - # Calculate this value once (used many times) - sinD = np.sin(D) - cosD = np.cos(D) - - # Calculate r and its derivatives - r = array([ - -r_prime * sinD, - np.zeros(r_prime.size), - -r_prime * cosD-ht[bounds] - ]) - rdot = array([ - (-dr_prime * sinD - r_prime * dD * cosD), - np.zeros(r_prime.size), - (-dr_prime * cosD + r_prime * dD * sinD - dht) - ]) - ci = (-ddr_prime * sinD - 2.0 * dr_prime * dD * cosD - r_prime * - (ddD * cosD - dD * dD * sinD)) - ck = (-ddr_prime * cosD + 2.0 * dr_prime * dD * sinD + r_prime * - (ddD * sinD + dD * dD * cosD) - ddht) - r2dot = array([ - ci, - np.zeros(ci.size), - ck - ]) - - # Define w and its derivative - w = array([ - (dlon + We) * cos_lat, - -dlat, - (-(dlon + We)) * sin_lat - ]) - wdot = array([ - dlon * cos_lat - (dlon + We) * dlat * sin_lat, - -ddlat, - (-ddlon * sin_lat - (dlon + We) * dlat * cos_lat) - ]) - w2_x_rdot = np.cross(2.0 * w, rdot, axis=0) - wdot_x_r = np.cross(wdot, r, axis=0) - w_x_r = np.cross(w, r, axis=0) - wxwxr = np.cross(w, w_x_r, axis=0) - - # Calculate wexwexre (which is the centrifugal acceleration due to the earth) - # not currently used: - # re = array([ - # -r_prime * sinD, - # np.zeros(r_prime.size), - # -r_prime * cosD - # ]) - we = array([ - We * cos_lat, - np.zeros(sin_lat.shape), - -We * sin_lat - ]) - # wexre = np.cross(we, re, axis=0) # not currently used - # wexwexre = np.cross(we, wexre, axis=0) # not currently used - wexr = np.cross(we, r, axis=0) - wexwexr = np.cross(we, wexr, axis=0) - - # Calculate total acceleration for the aircraft - acc = r2dot + w2_x_rdot + wdot_x_r + wxwxr - - # Eotvos correction is the vertical component of the total acceleration of - # the aircraft - the centrifugal acceleration of the earth, converted to mgal - E = (acc[2] - wexwexr[2]) * mps2mgal - if derivation_func is not np.gradient: - E = np.pad(E, (1, 1), 'edge') - - # Return Eotvos corrections - return E - # return E, r2dot, w2_x_rdot, wdot_x_r, wxwxr, wexwexr diff --git a/dgp/lib/transform/__init__.py b/dgp/lib/transform/__init__.py new file mode 100644 index 0000000..e69de29 diff --git a/dgp/lib/transform/derivatives.py b/dgp/lib/transform/derivatives.py new file mode 100644 index 0000000..c1df39f --- /dev/null +++ b/dgp/lib/transform/derivatives.py @@ -0,0 +1,60 @@ +# coding: utf-8 + +from pyqtgraph.flowchart.library.common import CtrlNode, Node + +import numpy as np + + +def centraldifference(data_in, n=1, order=2, dt=0.1): + if order == 2: + # first derivative + if n == 1: + dy = (data_in[2:] - data_in[0:-2]) / (2 * dt) + # second derivative + elif n == 2: + dy = ((data_in[0:-2] - 2 * data_in[1:-1] + data_in[2:]) / + np.power(dt, 2)) + else: + raise ValueError('Invalid value for parameter n {1 or 2}') + else: + raise NotImplementedError() + + return np.pad(dy, (1, 1), 'edge') + return dy + + +def gradient(data_in, dt=0.1): + return np.gradient(data_in, dt) + + +class CentralDifference(CtrlNode): + nodeName = "centraldifference" + uiTemplate = [ + ('order', 'combo', {'values': [2, 4], 'index': 0}), + ('n', 'combo', {'values': [1, 2], 'index': 0}), + ('dt', 'spin', {'value': 0.1, 'step': 0.1, 'bounds': [0.0001, None]}) + ] + + def __init__(self, name): + terminals = { + 'data_in': dict(io='in'), + 'data_out': dict(io='out'), + } + + CtrlNode.__init__(self, name, terminals=terminals) + + def process(self, data_in, display=True): + if self.ctrls['order'] == 2: + # first derivative + if self.ctrls['n'] == 1: + dy = (data_in[2:] - data_in[0:-2]) / (2 * self.ctrls['dt']) + # second derivative + elif self.ctrls['n'] == 2: + dy = ((data_in[0:-2] - 2 * data_in[1:-1] + data_in[2:]) / + np.power(self.ctrls['dt'], 2)) + else: + raise ValueError('Invalid value for parameter n {1 or 2}') + else: + raise NotImplementedError() + + return {'data_out': np.pad(dy, (1, 1), 'edge')} \ No newline at end of file diff --git a/dgp/lib/transform/filters.py b/dgp/lib/transform/filters.py new file mode 100644 index 0000000..6893749 --- /dev/null +++ b/dgp/lib/transform/filters.py @@ -0,0 +1,82 @@ +# coding: utf-8 + +from pyqtgraph.flowchart.library.common import CtrlNode + +from scipy import signal +import pandas as pd +import numpy as np + + +class FIRLowpassFilter(CtrlNode): + nodeName = 'FIRLowpassFilter' + uiTemplate = [ + ('length', 'spin', {'value': 60, 'step': 1, 'bounds': [1, None]}), + ('sample', 'spin', {'value': 0.5, 'step': 0.1, 'bounds': [0.0, None]}) + ] + + def __init__(self, name): + terminals = { + 'data_in': dict(io='in'), + 'data_out': dict(io='out'), + } + + CtrlNode.__init__(self, name, terminals=terminals) + + def process(self, data_in, display=True): + filter_len = self.ctrls['length'].value() + fs = self.ctrls['sample'].value() + fc = 1 / filter_len + nyq = fs / 2 + wn = fc / nyq + n = int(2 * filter_len * fs) + taps = signal.firwin(n, wn, window='blackman', nyq=nyq) + filtered_data = signal.filtfilt(taps, 1.0, data_in, padtype='even', + padlen=80) + return {'data_out': pd.Series(filtered_data, index=data_in.index)} + + +# TODO: Do ndarrays with both dimensions greater than 1 work? +class Detrend(CtrlNode): + """ + Removes a linear trend from the input dataset + + Parameters + ---------- + data_in: :obj:`DataFrame` or list-like + Data to detrend. If a DataFrame is given, then all channels are + detrended. + + Returns + ------- + :class:`DataFrame` or list-like + + """ + nodeName = 'Detrend' + uiTemplate = [ + ('begin', 'spin', {'value': 0, 'step': 0.1, 'bounds': [None, None]}), + ('end', 'spin', {'value': 0, 'step': 0.1, 'bounds': [None, None]}) + ] + + def __init__(self, name): + terminals = { + 'data_in': dict(io='in'), + 'data_out': dict(io='out'), + } + + CtrlNode.__init__(self, name, terminals=terminals) + + def process(self, data_in, display=True): + if isinstance(data_in, pd.DataFrame): + length = len(data_in.index) + else: + length = len(data_in) + + trend = np.linspace(self.ctrls['begin'].value(), + self.ctrls['end'].value(), + num=length) + if isinstance(data_in, (pd.Series, pd.DataFrame)): + trend = pd.Series(trend, index=data_in.index) + result = data_in.sub(trend, axis=0) + else: + result = data_in - trend + return {'data_out': result} diff --git a/dgp/lib/transform/gravity.py b/dgp/lib/transform/gravity.py new file mode 100644 index 0000000..7db69fb --- /dev/null +++ b/dgp/lib/transform/gravity.py @@ -0,0 +1,223 @@ +# coding: utf-8 + +from pyqtgraph.flowchart.library.common import Node + +import numpy as np +import pandas as pd +from numpy import array + +from .derivatives import centraldifference + + +class Eotvos(Node): + """ + Eotvos correction + + Parameters + ---------- + data_in: DataFrame + trajectory frame containing latitude, longitude, and + height above the ellipsoid + + Returns + ------- + Series + using the index from the input + """ + nodeName = 'Eotvos' + + # constants + a = 6378137.0 # Default semi-major axis + b = 6356752.3142 # Default semi-minor axis + ecc = (a - b) / a # Eccentricity + We = 0.00007292115 # sidereal rotation rate, radians/sec + mps2mgal = 100000 # m/s/s to mgal + dt = 0.1 + + def __init__(self, name): + terminals = { + 'data_in': dict(io='in'), + 'data_out': dict(io='out'), + } + + Node.__init__(self, name, terminals=terminals) + + def process(self, data_in, display=True): + lat = np.deg2rad(data_in['lat'].values) + lon = np.deg2rad(data_in['long'].values) + ht = data_in['ell_ht'].values + + dlat = centraldifference(lat, n=1, dt=self.dt) + ddlat = centraldifference(lat, n=2, dt=self.dt) + dlon = centraldifference(lon, n=1, dt=self.dt) + ddlon = centraldifference(lon, n=2, dt=self.dt) + dht = centraldifference(ht, n=1, dt=self.dt) + ddht = centraldifference(ht, n=2, dt=self.dt) + + # dlat = gradient(lat) + # ddlat = gradient(dlat) + # dlon = gradient(lon) + # ddlon = gradient(dlon) + # dht = gradient(ht) + # ddht = gradient(dht) + + sin_lat = np.sin(lat) + cos_lat = np.cos(lat) + sin_2lat = np.sin(2.0 * lat) + cos_2lat = np.cos(2.0 * lat) + + # Calculate the r' and its derivatives + r_prime = self.a * (1.0 - self.ecc * sin_lat * sin_lat) + dr_prime = -self.a * dlat * self.ecc * sin_2lat + ddr_prime = (-self.a * ddlat * self.ecc * sin_2lat - 2.0 * self.a * + dlat * dlat * self.ecc * cos_2lat) + + # Calculate the deviation from the normal and its derivatives + D = np.arctan(self.ecc * sin_2lat) + dD = 2.0 * dlat * self.ecc * cos_2lat + ddD = (2.0 * ddlat * self.ecc * cos_2lat - 4.0 * dlat * dlat * + self.ecc * sin_2lat) + + # Calculate this value once (used many times) + sinD = np.sin(D) + cosD = np.cos(D) + + # Calculate r and its derivatives + r = array([ + -r_prime * sinD, + np.zeros(r_prime.size), + -r_prime * cosD - ht + ]) + + rdot = array([ + (-dr_prime * sinD - r_prime * dD * cosD), + np.zeros(r_prime.size), + (-dr_prime * cosD + r_prime * dD * sinD - dht) + ]) + + ci = (-ddr_prime * sinD - 2.0 * dr_prime * dD * cosD - r_prime * + (ddD * cosD - dD * dD * sinD)) + ck = (-ddr_prime * cosD + 2.0 * dr_prime * dD * sinD + r_prime * + (ddD * sinD + dD * dD * cosD) - ddht) + r2dot = array([ + ci, + np.zeros(ci.size), + ck + ]) + + # Define w and its derivative + w = array([ + (dlon + self.We) * cos_lat, + -dlat, + (-(dlon + self.We)) * sin_lat + ]) + + wdot = array([ + dlon * cos_lat - (dlon + self.We) * dlat * sin_lat, + -ddlat, + (-ddlon * sin_lat - (dlon + self.We) * dlat * cos_lat) + ]) + + w2_x_rdot = np.cross(2.0 * w, rdot, axis=0) + wdot_x_r = np.cross(wdot, r, axis=0) + w_x_r = np.cross(w, r, axis=0) + wxwxr = np.cross(w, w_x_r, axis=0) + + we = array([ + self.We * cos_lat, + np.zeros(sin_lat.shape), + -self.We * sin_lat + ]) + + wexr = np.cross(we, r, axis=0) + wexwexr = np.cross(we, wexr, axis=0) + + # Calculate total acceleration for the aircraft + acc = r2dot + w2_x_rdot + wdot_x_r + wxwxr + + E = (acc[2] - wexwexr[2]) * self.mps2mgal + return {'data_out': pd.Series(E, index=data_in.index, name='eotvos')} + + +class LatitudeCorrection(Node): + """ + WGS84 latitude correction + + Accounts for the Earth's elliptical shape and rotation. The gravity value + that would be observed if Earth were a perfect, rotating ellipsoid is + referred to as normal gravity. Gravity increases with increasing latitude. + The correction is added as one moves toward the equator. + + Parameters + ---------- + data_in: DataFrame + trajectory frame containing latitude, longitude, and + height above the ellipsoid + + Returns + ------- + Series + units are mGal + """ + + nodeName = 'LatitudeCorrection' + + def __init__(self, name): + terminals = { + 'data_in': dict(io='in'), + 'data_out': dict(io='out'), + } + + Node.__init__(self, name, terminals=terminals) + + def process(self, data_in, display=True): + lat = np.deg2rad(data_in['lat'].values) + sin_lat2 = np.sin(lat) ** 2 + num = 1 + np.float(0.00193185265241) * sin_lat2 + den = np.sqrt(1 - np.float(0.00669437999014) * sin_lat2) + corr = -np.float(978032.53359) * num / den + return {'data_out': pd.Series(corr, + index=data_in.index, + name='lat_corr')} + + +# TODO: Define behavior for incorrectly named and missing columns +class FreeAirCorrection(Node): + """ + 2nd order Free Air Correction + + Compensates for the change in the gravitational field with respect to + distance from the center of the ellipsoid. Does not include the effect + of mass between the observation point and the datum. + + Parameters + ---------- + data_in: :class:`DataFrame` + trajectory frame containing latitude, longitude, and + height above the ellipsoid + + Returns + ------- + :class:`Series` + units are mGal + """ + + nodeName = 'FreeAirCorrection' + + def __init__(self, name): + terminals = { + 'data_in': dict(io='in'), + 'data_out': dict(io='out'), + } + + Node.__init__(self, name, terminals=terminals) + + def process(self, data_in, display=True): + lat = np.deg2rad(data_in['lat'].values) + ht = data_in['ell_ht'].values + sin_lat2 = np.sin(lat) ** 2 + fac = -((np.float(0.3087691) - np.float(0.0004398) * sin_lat2) * + ht) + np.float(7.2125e-8) * (ht ** 2) + return {'data_out': pd.Series(fac, + index=data_in.index, + name='fac')} \ No newline at end of file diff --git a/dgp/lib/transform/operators.py b/dgp/lib/transform/operators.py new file mode 100644 index 0000000..909df08 --- /dev/null +++ b/dgp/lib/transform/operators.py @@ -0,0 +1,42 @@ +# coding: utf-8 + +from pyqtgraph.flowchart.library.common import Node, CtrlNode + +import pandas as pd + + +class ScalarMultiply(CtrlNode): + nodeName = 'ScalarMultiply' + uiTemplate = [ + ('multiplier', 'spin', {'value': 1, 'step': 1, 'bounds': [None, None]}), + ] + + def __init__(self, name): + terminals = { + 'data_in': dict(io='in'), + 'data_out': dict(io='out'), + } + + CtrlNode.__init__(self, name, terminals=terminals) + + def process(self, data_in, display=True): + result = data_in * self.ctrls['multiplier'].value() + return {'data_out': result} + + +# TODO: Consider how to do this for an undefined number of inputs +class ConcatenateSeries(Node): + nodeName = 'ConcatenateSeries' + + def __init__(self, name): + terminals = { + 'A': dict(io='in'), + 'B': dict(io='in'), + 'data_out': dict(io='out'), + } + + Node.__init__(self, name, terminals=terminals) + + def process(self, A, B, display=True): + result = pd.concat([A, B], join='outer', axis=1) + return {'data_out': result} \ No newline at end of file diff --git a/examples/filter_graph.py b/examples/filter_graph.py new file mode 100644 index 0000000..acdcec2 --- /dev/null +++ b/examples/filter_graph.py @@ -0,0 +1,96 @@ +from pyqtgraph.flowchart import Flowchart +from pyqtgraph.Qt import QtGui, QtCore +import pyqtgraph as pg +import pyqtgraph.flowchart.library as fclib +from pyqtgraph.flowchart.library.common import CtrlNode + +from scipy import signal +import numpy as np +import sys +import pandas as pd + + +class LowpassFilter(CtrlNode): + nodeName = "LowpassFilter" + uiTemplate = [ + ('cutoff', 'spin', {'value': 0.5, 'step': 0.1, 'bounds': [0.0, None]}), + ('sample', 'spin', {'value': 0.5, 'step': 0.1, 'bounds': [0.0, None]}) + ] + + def __init__(self, name): + terminals = { + 'dataIn': dict(io='in'), + 'dataOut': dict(io='out'), + } + + CtrlNode.__init__(self, name, terminals=terminals) + + def process(self, dataIn, display=True): + fc = self.ctrls['cutoff'].value() + fs = self.ctrls['sample'].value() + filter_len = 1 / fc + nyq = fs / 2.0 + wn = fc / nyq + n = int(2.0 * filter_len * fs) + taps = signal.firwin(n, wn, window='blackman', nyq=nyq) + filtered_data = signal.filtfilt(taps, 1.0, dataIn, padtype='even', padlen=80) + result = pd.Series(filtered_data, index=dataIn.index) + return {'dataOut': result} + + +app = QtGui.QApplication([]) +win = QtGui.QMainWindow() +cw = QtGui.QWidget() +win.setCentralWidget(cw) +layout = QtGui.QGridLayout() +cw.setLayout(layout) + +fc = Flowchart(terminals={ + 'dataIn': {'io': 'in'}, + 'dataOut': {'io': 'out'} +}) + +layout.addWidget(fc.widget(), 0, 0, 2, 1) +pw1 = pg.PlotWidget() +pw2 = pg.PlotWidget() +layout.addWidget(pw1, 0, 1) +layout.addWidget(pw2, 1, 1) + +win.show() + +fs = 100 # Hz +frequencies = [1.2, 3, 5, 7] # Hz +start = 0 +stop = 10 # s +rng = pd.date_range('1/9/2017', periods=fs * (stop - start), freq='L') +t = np.linspace(start, stop, fs * (stop - start)) +sig = np.zeros(len(t)) +for f in frequencies: + sig += np.sin(2 * np.pi * f * t) +ts = pd.Series(sig, index=rng) + +fc.setInput(dataIn=ts) + +plotList = {'Top Plot': pw1, 'Bottom Plot': pw2} + +pw1Node = fc.createNode('PlotWidget', pos=(0, -150)) +pw1Node.setPlotList(plotList) +pw1Node.setPlot(pw1) + +pw2Node = fc.createNode('PlotWidget', pos=(150, -150)) +pw2Node.setPlotList(plotList) +pw2Node.setPlot(pw2) + +fclib.registerNodeType(LowpassFilter, [('Filters',)]) + +fnode = fc.createNode('LowpassFilter', pos=(0,0)) +fnode.ctrls['cutoff'].setValue(5) +fnode.ctrls['sample'].setValue(100) + +fc.connectTerminals(fc['dataIn'], fnode['dataIn']) +fc.connectTerminals(fc['dataIn'], pw1Node['In']) +fc.connectTerminals(fnode['dataOut'], pw2Node['In']) +fc.connectTerminals(fnode['dataOut'], fc['dataOut']) + +if (sys.flags.interactive != 1) or not hasattr(QtCore, 'PYQT_VERSION'): + QtGui.QApplication.instance().exec_() \ No newline at end of file diff --git a/requirements.txt b/requirements.txt index b1bb300..c4cd7fb 100644 --- a/requirements.txt +++ b/requirements.txt @@ -28,3 +28,4 @@ sphinx-rtd-theme==0.2.4 sphinxcontrib-websupport==1.0.1 tables==3.4.2 urllib3==1.22 +pyqtgraph==0.10.0 \ No newline at end of file diff --git a/tests/test_eotvos.py b/tests/test_eotvos.py deleted file mode 100644 index 0c9a1b0..0000000 --- a/tests/test_eotvos.py +++ /dev/null @@ -1,47 +0,0 @@ -# coding: utf-8 - -import os -import unittest -import numpy as np -import csv - -from .context import dgp -from tests import sample_dir -from dgp.lib import eotvos -# import dgp.lib.eotvos as eotvos -import dgp.lib.trajectory_ingestor as ti - - -class TestEotvos(unittest.TestCase): - """Test Eotvos correction calculation.""" - def setUp(self): - pass - - def test_eotvos(self): - """Test Eotvos function against corrections generated with MATLAB program.""" - # Ensure gps_fields are ordered correctly relative to test file - gps_fields = ['mdy', 'hms', 'lat', 'long', 'ortho_ht', 'ell_ht', 'num_stats', 'pdop'] - data = ti.import_trajectory('tests/sample_data/eotvos_short_input.txt', columns=gps_fields, skiprows=1, - timeformat='hms') - - result_eotvos = [] - with sample_dir.joinpath('eotvos_short_result.csv').open() as fd: - test_data = csv.DictReader(fd) - for line in test_data: - result_eotvos.append(float(line['Eotvos_full'])) - lat = data['lat'].values - lon = data['long'].values - ht = data['ell_ht'].values - rate = 10 - - eotvos_a = eotvos.calc_eotvos(lat, lon, ht, rate, derivation_func=eotvos.derivative) - # eotvos_b = eotvos.calc_eotvos(lat, lon, ht, rate, derivation_func=np.gradient) - # print(eotvos_a) - # print(eotvos_b) - - for i, value in enumerate(eotvos_a): - try: - self.assertAlmostEqual(value, result_eotvos[i], places=2) - except AssertionError: - print("Invalid assertion at data line: {}".format(i)) - raise AssertionError diff --git a/tests/test_graphs.py b/tests/test_graphs.py new file mode 100644 index 0000000..23a06ce --- /dev/null +++ b/tests/test_graphs.py @@ -0,0 +1,220 @@ +# coding: utf-8 + +import unittest +import csv +from pyqtgraph.flowchart import Flowchart +import pyqtgraph.flowchart.library as fclib +from pyqtgraph.Qt import QtGui +import pandas as pd +import numpy as np + +from tests import sample_dir +import dgp.lib.trajectory_ingestor as ti +from dgp.lib.transform.gravity import (Eotvos, LatitudeCorrection, + FreeAirCorrection) +from dgp.lib.transform.filters import Detrend +from dgp.lib.transform.operators import ScalarMultiply, ConcatenateSeries + + +class TestGraphNodes(unittest.TestCase): + def setUp(self): + self.app = QtGui.QApplication([]) + self.fc = Flowchart(terminals={ + 'data_in': {'io': 'in'}, + 'data_out': {'io': 'out'} + }) + + library = fclib.LIBRARY.copy() + library.addNodeType(Eotvos, [('Gravity',)]) + library.addNodeType(LatitudeCorrection, [('Gravity',)]) + library.addNodeType(FreeAirCorrection, [('Gravity',)]) + library.addNodeType(Detrend, [('Filters',)]) + library.addNodeType(ScalarMultiply, [('Operators',)]) + library.addNodeType(ConcatenateSeries, [('Operators',)]) + self.fc.setLibrary(library) + + # Ensure gps_fields are ordered correctly relative to test file + gps_fields = ['mdy', 'hms', 'lat', 'long', 'ortho_ht', 'ell_ht', + 'num_stats', 'pdop'] + self.data = ti.import_trajectory( + 'tests/sample_data/eotvos_short_input.txt', + columns=gps_fields, + skiprows=1, + timeformat='hms' + ) + + def test_eotvos_node(self): + # TODO: More complete test that spans the range of possible inputs + result_eotvos = [] + with sample_dir.joinpath('eotvos_short_result.csv').open() as fd: + test_data = csv.DictReader(fd) + for line in test_data: + result_eotvos.append(float(line['Eotvos_full'])) + + fnode = self.fc.createNode('Eotvos', pos=(0, 0)) + self.fc.connectTerminals(self.fc['data_in'], fnode['data_in']) + self.fc.connectTerminals(fnode['data_out'], self.fc['data_out']) + + result = self.fc.process(data_in=self.data) + eotvos_a = result['data_out'] + + for i, value in enumerate(eotvos_a): + if 1 < i < len(result_eotvos) - 2: + try: + self.assertAlmostEqual(value, result_eotvos[i], places=2) + except AssertionError: + print("Invalid assertion at data line: {}".format(i)) + raise AssertionError + + def test_free_air_correction(self): + # TODO: More complete test that spans the range of possible inputs + s1 = pd.Series([39.9148595446, 39.9148624273], name='lat') + s2 = pd.Series([1599.197, 1599.147], name='ell_ht') + test_input = pd.concat([s1, s2], axis=1) + test_input.index = pd.Index([self.data.index[0], self.data.index[-1]]) + + expected = pd.Series([-493.308594971815, -493.293177069581], + index=pd.Index([self.data.index[0], + self.data.index[-1]]), + name='fac' + ) + + fnode = self.fc.createNode('FreeAirCorrection', pos=(0, 0)) + self.fc.connectTerminals(self.fc['data_in'], fnode['data_in']) + self.fc.connectTerminals(fnode['data_out'], self.fc['data_out']) + + result = self.fc.process(data_in=test_input) + res = result['data_out'] + + np.testing.assert_array_almost_equal(expected, res, decimal=8) + + # check that the indices are equal + self.assertTrue(test_input.index.identical(res.index)) + + def test_latitude_correction(self): + test_input = pd.DataFrame([39.9148595446, 39.9148624273]) + test_input.columns = ['lat'] + test_input.index = pd.Index([self.data.index[0], self.data.index[-1]]) + + expected = pd.Series([-980162.105035777, -980162.105292394], + index=pd.Index([self.data.index[0], + self.data.index[-1]]), + name='lat_corr' + ) + + fnode = self.fc.createNode('LatitudeCorrection', pos=(0, 0)) + self.fc.connectTerminals(self.fc['data_in'], fnode['data_in']) + self.fc.connectTerminals(fnode['data_out'], self.fc['data_out']) + + result = self.fc.process(data_in=test_input) + res = result['data_out'] + + np.testing.assert_array_almost_equal(expected, res, decimal=8) + + # check that the indexes are equal + self.assertTrue(test_input.index.identical(res.index)) + + def test_detrend_series(self): + test_input = pd.Series(np.arange(5), index=['A', 'B', 'C', 'D', 'E']) + expected = pd.Series(np.zeros(5), index=['A', 'B', 'C', 'D', 'E']) + + fnode = self.fc.createNode('Detrend', pos=(0, 0)) + self.fc.connectTerminals(self.fc['data_in'], fnode['data_in']) + self.fc.connectTerminals(fnode['data_out'], self.fc['data_out']) + fnode.ctrls['begin'].setValue(test_input[0]) + fnode.ctrls['end'].setValue(test_input[-1]) + + result = self.fc.process(data_in=test_input) + res = result['data_out'] + self.assertTrue(res.equals(expected)) + + # check that the indexes are equal + self.assertTrue(test_input.index.identical(res.index)) + + def test_detrend_ndarray(self): + test_input = np.linspace(2, 20, num=10) + expected = np.linspace(0, 0, num=10) + + fnode = self.fc.createNode('Detrend', pos=(0, 0)) + self.fc.connectTerminals(self.fc['data_in'], fnode['data_in']) + self.fc.connectTerminals(fnode['data_out'], self.fc['data_out']) + fnode.ctrls['begin'].setValue(test_input[0]) + fnode.ctrls['end'].setValue(test_input[-1]) + + result = self.fc.process(data_in=test_input) + res = result['data_out'] + np.testing.assert_array_equal(expected, res) + + def test_detrend_dataframe(self): + s1 = pd.Series(np.arange(0, 5)) + s2 = pd.Series(np.arange(2, 7)) + test_input = pd.concat([s1, s2], axis=1) + test_input.index = ['A', 'B', 'C', 'D', 'E'] + + s1 = pd.Series(np.zeros(5)) + s2 = pd.Series(np.ones(5) * 2) + expected = pd.concat([s1, s2], axis=1) + expected.index = ['A', 'B', 'C', 'D', 'E'] + + fnode = self.fc.createNode('Detrend', pos=(0, 0)) + self.fc.connectTerminals(self.fc['data_in'], fnode['data_in']) + self.fc.connectTerminals(fnode['data_out'], self.fc['data_out']) + fnode.ctrls['begin'].setValue(0) + fnode.ctrls['end'].setValue(4) + + result = self.fc.process(data_in=test_input) + res = result['data_out'] + + self.assertTrue(res.equals(expected)) + + # check that the indexes are equal + self.assertTrue(test_input.index.identical(res.index)) + + def test_scalar_multiply(self): + test_input = pd.DataFrame(np.ones((5, 5)), + index=['A', 'B', 'C', 'D', 'E']) + expected = pd.DataFrame(np.ones((5, 5)) * 3, + index=['A', 'B', 'C', 'D', 'E']) + + fnode = self.fc.createNode('ScalarMultiply', pos=(0, 0)) + self.fc.connectTerminals(self.fc['data_in'], fnode['data_in']) + self.fc.connectTerminals(fnode['data_out'], self.fc['data_out']) + fnode.ctrls['multiplier'].setValue(3) + + result = self.fc.process(data_in=test_input) + res = result['data_out'] + + self.assertTrue(res.equals(expected)) + + +class TestBinaryOpsGraphNodes(unittest.TestCase): + def setUp(self): + self.app = QtGui.QApplication([]) + self.fc = Flowchart(terminals={ + 'A': {'io': 'in'}, + 'B': {'io': 'in'}, + 'data_out': {'io': 'out'} + }) + + library = fclib.LIBRARY.copy() + library.addNodeType(ConcatenateSeries, [('Operators',)]) + self.fc.setLibrary(library) + + def test_concat_series(self): + input_A = pd.Series(np.arange(0, 5), index=['A', 'B', 'C', 'D', 'E']) + input_B = pd.Series(np.arange(2, 7), index=['A', 'B', 'C', 'D', 'E']) + expected = pd.concat([input_A, input_B], axis=1) + + fnode = self.fc.createNode('ConcatenateSeries', pos=(0, 0)) + self.fc.connectTerminals(self.fc['A'], fnode['A']) + self.fc.connectTerminals(self.fc['B'], fnode['B']) + self.fc.connectTerminals(fnode['data_out'], self.fc['data_out']) + + result = self.fc.process(A=input_A, B=input_B) + res = result['data_out'] + + self.assertTrue(res.equals(expected)) + + # check that the indexes are equal + self.assertTrue(input_A.index.identical(res.index)) + self.assertTrue(input_B.index.identical(res.index)) \ No newline at end of file From 73d4745ba0fcf888108c01feac1d493b65b0b796 Mon Sep 17 00:00:00 2001 From: Zachery Brady Date: Fri, 26 Jan 2018 12:59:25 -0700 Subject: [PATCH 055/236] TST/FIX: Fix broken tests due to QApplication usage. Segfaults caused by multiple instances of QApplication in the test suite. Fixed by instantiating single instance in context.py. --- tests/context.py | 3 +++ tests/test_dialogs.py | 3 +-- tests/test_graphs.py | 7 +++++-- 3 files changed, 9 insertions(+), 4 deletions(-) diff --git a/tests/context.py b/tests/context.py index 9d9a87a..acab0e8 100644 --- a/tests/context.py +++ b/tests/context.py @@ -2,9 +2,12 @@ import os import sys +from PyQt5.Qt import QApplication sys.path.insert(0, os.path.abspath(os.path.join(os.path.dirname(__file__), '..'))) # Import dgp making the project available to test suite by relative import of this file # e.g. from .context import dgp import dgp + +APP = QApplication([]) diff --git a/tests/test_dialogs.py b/tests/test_dialogs.py index d51c244..6b0f4ee 100644 --- a/tests/test_dialogs.py +++ b/tests/test_dialogs.py @@ -1,6 +1,6 @@ # coding: utf-8 -from .context import dgp +from .context import dgp, APP import pathlib import tempfile @@ -26,7 +26,6 @@ def setUp(self): ['r1h1', 'r1h2', 'r1h3']] self.m_grav_path = pathlib.Path('tests/sample_gravity.csv') self.m_gps_path = pathlib.Path('tests/sample_trajectory.txt') - self.app = QtWidgets.QApplication([]) def test_properties_dialog(self): t_dlg = dlg.PropertiesDialog(self.m_flight) diff --git a/tests/test_graphs.py b/tests/test_graphs.py index 23a06ce..564cde5 100644 --- a/tests/test_graphs.py +++ b/tests/test_graphs.py @@ -1,5 +1,7 @@ # coding: utf-8 +from .context import dgp, APP + import unittest import csv from pyqtgraph.flowchart import Flowchart @@ -18,7 +20,7 @@ class TestGraphNodes(unittest.TestCase): def setUp(self): - self.app = QtGui.QApplication([]) + # self.app = QtGui.QApplication([]) self.fc = Flowchart(terminals={ 'data_in': {'io': 'in'}, 'data_out': {'io': 'out'} @@ -189,7 +191,8 @@ def test_scalar_multiply(self): class TestBinaryOpsGraphNodes(unittest.TestCase): def setUp(self): - self.app = QtGui.QApplication([]) + # self.app = QtGui.QApplication([]) + # self.app = QtWidgets.QApplication([]) self.fc = Flowchart(terminals={ 'A': {'io': 'in'}, 'B': {'io': 'in'}, From e455ba4c11e9880268ed380fd716916b58e85b2e Mon Sep 17 00:00:00 2001 From: cbertinato Date: Wed, 31 Jan 2018 20:56:55 -0500 Subject: [PATCH 056/236] ENH: Added functionality to synchronize signals by cross correlation (#62) ENH: Added functionality to synchronize signals by cross correlation --- dgp/lib/timesync.py | 213 +++++++++++++++++++++++++++++++++ dgp/lib/transform/operators.py | 35 ++++++ dgp/lib/transform/timeops.py | 40 +++++++ tests/test_graphs.py | 206 +++++++++++++++++++++++++++---- tests/test_timesync.py | 116 ++++++++++++++++++ 5 files changed, 585 insertions(+), 25 deletions(-) create mode 100644 dgp/lib/timesync.py create mode 100644 dgp/lib/transform/timeops.py create mode 100644 tests/test_timesync.py diff --git a/dgp/lib/timesync.py b/dgp/lib/timesync.py new file mode 100644 index 0000000..84cb5c2 --- /dev/null +++ b/dgp/lib/timesync.py @@ -0,0 +1,213 @@ +# coding=utf-8 + +import numpy as np +from pandas import DataFrame +import pandas as pd +from pandas.tseries.frequencies import to_offset +from pandas.tseries.offsets import DateOffset +from scipy.interpolate import interp1d +import warnings + + +def interpolate_1d_vector(vector: np.array, factor: int): + """ + Interpolate i.e. up sample a give 1D vector by interpolation factor + + Parameters + ---------- + vector: np.array + 1D Data Vector + factor: int + Interpolation factor + + Returns + ------- + np.array: + 1D Array interpolated by 'factor' + + """ + x = np.arange(np.size(vector)) + y = vector + f = interp1d(x, y) + # f = np.interp(x, x, y) + + x_extended_by_factor = np.linspace(x[0], x[-1], np.size(x) * factor) + y_interpolated = np.zeros(np.size(x_extended_by_factor)) + + i = 0 + for x in x_extended_by_factor: + y_interpolated[i] = f(x) + i += 1 + + return y_interpolated + + +def find_time_delay(s1, s2, datarate=1, resolution: bool=False): + """ + Finds the time shift or delay between two signals + If s1 is advanced to s2, then the delay is positive. + + Parameters + ---------- + s1: array-like + s2: array-like + datarate: int, optional + Input data sample rate in Hz. If objects with time-like indexes are + given in the first two arguments, then this argument is ignored. + resolution: bool + If False use data without oversampling + If True, calculates time delay with 10* oversampling + + Returns + ------- + Scalar: + Time shift between s1 and s2. If datarate is not specified, then the + delay is given in fractional samples. Otherwise, delay is given in + seconds. If both inputs have a time-like index, then the frequency + is inferred from there. + + """ + + if hasattr(s1, 'index') and not hasattr(s2, 'index'): + warnings.warn('s2 has no index. Ignoring index for s1.', stacklevel=2) + in1 = s1.values + in2 = s2 + elif not hasattr(s1, 'index') and hasattr(s2, 'index'): + warnings.warn('s1 has no index. Ignoring index for s1.', stacklevel=2) + in1 = s1 + in2 = s2.values + elif hasattr(s1, 'index') and hasattr(s2, 'index'): + if not isinstance(s1.index, pd.DatetimeIndex): + warnings.warn('Index of s1 is not a DateTimeIndex. Ignoring both ' + 'indexes.', stacklevel=2) + in1 = s1.values + + try: + in2 = s2.values + except AttributeError: + in2 = s2 + + elif not isinstance(s2.index, pd.DatetimeIndex): + warnings.warn('Index of s2 is not a DateTimeIndex. Ignoring both ' + 'indexes.', stacklevel=2) + in2 = s2.values + + try: + in1 = s1.values + except AttributeError: + in1 = s1 + else: + in1 = s1.values + in2 = s2.values + + # TODO: Option to normalize the two indexes + if s1.index.freq is not None: + s1_freq = s1.index.freq + else: + s1_freq = s1.index.inferred_freq + + if s2.index.freq is not None: + s2_freq = s2.index.freq + else: + s2_freq = s2.index.inferred_freq + + if s1_freq != s2_freq: + raise ValueError('Indexes have different frequencies') + + if s1_freq is None: + raise ValueError('Index frequency cannot be inferred') + + freq = pd.to_timedelta(to_offset(s1_freq)).microseconds * 1e-6 + datarate = 1 / freq + + else: + in1 = s1 + in2 = s2 + + lagwith = 200 + len_s1 = len(in1) + + if not resolution: + c = np.correlate(in1, in2, mode='full') + scale = datarate + else: + in1 = interpolate_1d_vector(in1, datarate) + in2 = interpolate_1d_vector(in2, datarate) + c = np.correlate(in1, in2, mode='full') + scale = datarate * 10 + + shift = np.linspace(-lagwith, lagwith, 2 * lagwith + 1) + corre = c[len_s1 - 1 - lagwith:len_s1 + lagwith] + maxi = np.argmax(corre) + dm1 = abs(corre[maxi] - corre[maxi - 1]) + dp1 = abs(corre[maxi] - corre[maxi + 1]) + if dm1 < dp1: + x = shift[maxi-2: maxi+1] + z = np.polyfit(x, corre[maxi - 2:maxi + 1], 2) + else: + z = np.polyfit(shift[maxi - 1:maxi + 2], corre[maxi - 1:maxi + 2], 2) + + dt1 = z[1] / (2 * z[0]) + + return dt1 / scale + + +def shift_frame(frame, delay): + return frame.tshift(delay * 1e6, freq='U') + + +def shift_frames(gravity: DataFrame, gps: DataFrame, eotvos: DataFrame, + datarate=10) -> DataFrame: + """ + Synchronize and join a gravity and gps DataFrame (DF) into a single time + shifted DF. + Time lag/shift is found using the find_time_delay function, which cross + correlates the gravity channel with Eotvos corrections. + The DFs (gravity and gps) are then upsampled to a 1ms period using cubic + interpolation. + The Gravity DataFrame is then shifted by the time shift factor returned by + find_time_delay at ms precision. + We then join the GPS DF on the Gravity DF using a left join resulting in a + single DF with Gravity and GPS data at 1ms frequency. + Finally the joined DF is downsampled back to the original frequency 1/10Hz + + Parameters + ---------- + gravity: DataFrame + Gravity data DataFrame to time shift and join + gps: DataFrame + GPS/Trajectory DataFrame to correlate with Gravity data + eotvos: DataFrame + Eotvos correction for input Trajectory + datarate: int + Scalar datarate in Hz + + Returns + ------- + DataFrame: + Synchronized and joined DataFrame containing: + set{gravity.columns, gps.columns} + If gps contains duplicate column names relative to gravity DF, they will + be suffixed with '_gps' + + """ + + # eotvos = calc_eotvos(gps['lat'].values, gps['longitude'].values, + # gps['ell_ht'].values, datarate) + delay = find_time_delay(gravity['gravity'].values, eotvos, 10) + time_shift = DateOffset(seconds=delay) + + # Upsample and then shift: + grav_1ms = gravity.resample('1L').interpolate(method='cubic').fillna(method='pad') + gps_1ms = gps.resample('1L').interpolate(method='cubic').fillna(method='pad') + gravity_synced = grav_1ms.shift(freq=time_shift) # type: DataFrame + + # Join shifted DataFrames: + joined = gravity_synced.join(gps_1ms, how='left', rsuffix='_gps') + + # Now downsample back to original period + down_sample = "{}S".format(1/datarate) + # TODO: What method to use when downsampling - mean, or some other method? + # Can use .apply() to apply custom filter/sampling method + return joined.resample(down_sample).mean() + diff --git a/dgp/lib/transform/operators.py b/dgp/lib/transform/operators.py index 909df08..2995be8 100644 --- a/dgp/lib/transform/operators.py +++ b/dgp/lib/transform/operators.py @@ -39,4 +39,39 @@ def __init__(self, name): def process(self, A, B, display=True): result = pd.concat([A, B], join='outer', axis=1) + return {'data_out': result} + + +class AddSeries(CtrlNode): + nodeName = 'AddSeries' + uiTemplate = [ + ('A multiplier', 'spin', {'value': 1, 'step': 1, 'bounds': [None, None]}), + ('B multiplier', 'spin', {'value': 1, 'step': 1, 'bounds': [None, None]}), + ] + + def __init__(self, name): + terminals = { + 'A': dict(io='in'), + 'B': dict(io='in'), + 'data_out': dict(io='out'), + } + + CtrlNode.__init__(self, name, terminals=terminals) + + def process(self, A, B, display=True): + if not isinstance(A, pd.Series): + raise TypeError('Input A is not a Series, got {typ}' + .format(typ=type(A))) + if not isinstance(B, pd.Series): + raise TypeError('Input B is not a Series, got {typ}' + .format(typ=type(B))) + + if A.shape != B.shape: + raise ValueError('Shape of A is {ashape} and shape of ' + 'B is {bshape}'.format(ashape=A.shape, + bshape=B.shape)) + a = self.ctrls['A multiplier'].value() + b = self.ctrls['B multiplier'].value() + + result = a * A + b * B return {'data_out': result} \ No newline at end of file diff --git a/dgp/lib/transform/timeops.py b/dgp/lib/transform/timeops.py new file mode 100644 index 0000000..536218b --- /dev/null +++ b/dgp/lib/transform/timeops.py @@ -0,0 +1,40 @@ +# coding: utf-8 + +from pyqtgraph.flowchart.library.common import Node +import pandas as pd + +from ..timesync import find_time_delay, shift_frame + + +class ComputeDelay(Node): + nodeName = 'ComputeDelay' + + def __init__(self, name): + terminals = { + 's1': dict(io='in'), + 's2': dict(io='in'), + 'data_out': dict(io='out'), + } + + Node.__init__(self, name, terminals=terminals) + + def process(self, s1, s2, display=True): + delay = find_time_delay(s1, s2) + return {'data_out': delay} + + +class ShiftFrame(Node): + nodeName = 'ShiftFrame' + + def __init__(self, name): + terminals = { + 'frame': dict(io='in'), + 'delay': dict(io='in'), + 'data_out': dict(io='out'), + } + + Node.__init__(self, name, terminals=terminals) + + def process(self, frame, delay, display=True): + shifted = shift_frame(frame, delay) + return {'data_out': shifted} diff --git a/tests/test_graphs.py b/tests/test_graphs.py index 564cde5..abb837d 100644 --- a/tests/test_graphs.py +++ b/tests/test_graphs.py @@ -1,7 +1,6 @@ # coding: utf-8 -from .context import dgp, APP - +import pytest import unittest import csv from pyqtgraph.flowchart import Flowchart @@ -15,36 +14,45 @@ from dgp.lib.transform.gravity import (Eotvos, LatitudeCorrection, FreeAirCorrection) from dgp.lib.transform.filters import Detrend -from dgp.lib.transform.operators import ScalarMultiply, ConcatenateSeries +from dgp.lib.transform.operators import (ScalarMultiply, ConcatenateSeries, + AddSeries) +from dgp.lib.transform.timeops import ComputeDelay, ShiftFrame class TestGraphNodes(unittest.TestCase): - def setUp(self): - # self.app = QtGui.QApplication([]) - self.fc = Flowchart(terminals={ - 'data_in': {'io': 'in'}, - 'data_out': {'io': 'out'} - }) - - library = fclib.LIBRARY.copy() - library.addNodeType(Eotvos, [('Gravity',)]) - library.addNodeType(LatitudeCorrection, [('Gravity',)]) - library.addNodeType(FreeAirCorrection, [('Gravity',)]) - library.addNodeType(Detrend, [('Filters',)]) - library.addNodeType(ScalarMultiply, [('Operators',)]) - library.addNodeType(ConcatenateSeries, [('Operators',)]) - self.fc.setLibrary(library) + @classmethod + def setUpClass(cls): + cls.app = QtGui.QApplication([]) + + cls.library = fclib.LIBRARY.copy() + cls.library.addNodeType(Eotvos, [('Gravity',)]) + cls.library.addNodeType(LatitudeCorrection, [('Gravity',)]) + cls.library.addNodeType(FreeAirCorrection, [('Gravity',)]) + cls.library.addNodeType(Detrend, [('Filters',)]) + cls.library.addNodeType(ScalarMultiply, [('Operators',)]) + cls.library.addNodeType(ConcatenateSeries, [('Operators',)]) # Ensure gps_fields are ordered correctly relative to test file gps_fields = ['mdy', 'hms', 'lat', 'long', 'ortho_ht', 'ell_ht', 'num_stats', 'pdop'] - self.data = ti.import_trajectory( + cls.data = ti.import_trajectory( 'tests/sample_data/eotvos_short_input.txt', columns=gps_fields, skiprows=1, timeformat='hms' ) + @classmethod + def tearDownClass(cls): + cls.app.exit() + + def setUp(self): + self.fc = Flowchart(terminals={ + 'data_in': {'io': 'in'}, + 'data_out': {'io': 'out'} + }) + self.fc.setLibrary(self.library) + def test_eotvos_node(self): # TODO: More complete test that spans the range of possible inputs result_eotvos = [] @@ -190,18 +198,26 @@ def test_scalar_multiply(self): class TestBinaryOpsGraphNodes(unittest.TestCase): + + @classmethod + def setUpClass(cls): + cls.app = QtGui.QApplication([]) + cls.library = fclib.LIBRARY.copy() + cls.library.addNodeType(ConcatenateSeries, [('Operators',)]) + cls.library.addNodeType(AddSeries, [('Operators',)]) + def setUp(self): - # self.app = QtGui.QApplication([]) - # self.app = QtWidgets.QApplication([]) self.fc = Flowchart(terminals={ 'A': {'io': 'in'}, 'B': {'io': 'in'}, 'data_out': {'io': 'out'} }) - library = fclib.LIBRARY.copy() - library.addNodeType(ConcatenateSeries, [('Operators',)]) - self.fc.setLibrary(library) + self.fc.setLibrary(self.library) + + @classmethod + def tearDownClass(cls): + cls.app.exit() def test_concat_series(self): input_A = pd.Series(np.arange(0, 5), index=['A', 'B', 'C', 'D', 'E']) @@ -220,4 +236,144 @@ def test_concat_series(self): # check that the indexes are equal self.assertTrue(input_A.index.identical(res.index)) - self.assertTrue(input_B.index.identical(res.index)) \ No newline at end of file + self.assertTrue(input_B.index.identical(res.index)) + + def test_add_series(self): + input_a = pd.Series(np.arange(0, 5), index=['A', 'B', 'C', 'D', 'E']) + input_b = pd.Series(np.arange(2, 7), index=['A', 'B', 'C', 'D', 'E']) + expected = input_a.astype(np.float64) + input_b.astype(np.float64) + + fnode = self.fc.createNode('AddSeries', pos=(0, 0)) + self.fc.connectTerminals(self.fc['A'], fnode['A']) + self.fc.connectTerminals(self.fc['B'], fnode['B']) + self.fc.connectTerminals(fnode['data_out'], self.fc['data_out']) + + result = self.fc.process(A=input_a, B=input_b) + res = result['data_out'] + self.assertTrue(res.equals(expected)) + + +class TestTimeOpsGraphNodes(unittest.TestCase): + @classmethod + def setUpClass(cls): + cls.app = QtGui.QApplication([]) + cls.library = fclib.LIBRARY.copy() + cls.library.addNodeType(ComputeDelay, [('Time Ops',)]) + cls.library.addNodeType(ShiftFrame, [('Time Ops',)]) + + def setUp(self): + self.fc = Flowchart(terminals={ + 's1': {'io': 'in'}, + 's2': {'io': 'in'}, + 'data_out': {'io': 'out'} + }) + + self.fc.setLibrary(self.library) + + @classmethod + def tearDownClass(cls): + cls.app.exit() + + def test_compute_delay_array(self): + rnd_offset = 1.1 + t1 = np.linspace(1, 5000, 50000, dtype=np.float64) + t2 = t1 + rnd_offset + s1 = np.sin(0.8 * t1) + np.sin(0.2 * t1) + s2 = np.sin(0.8 * t2) + np.sin(0.2 * t2) + + fnode = self.fc.createNode('ComputeDelay', pos=(0, 0)) + self.fc.connectTerminals(self.fc['s1'], fnode['s1']) + self.fc.connectTerminals(self.fc['s2'], fnode['s2']) + self.fc.connectTerminals(fnode['data_out'], self.fc['data_out']) + + result = self.fc.process(s1=s1, s2=s2) + res = result['data_out'] + + # TODO: Kludge to make the test pass. Consider whether to admit arrays in graph processing + self.assertAlmostEqual(rnd_offset, -res/10, places=2) + + def test_compute_delay_timelike_index(self): + rnd_offset = 1.1 + t1 = np.arange(0, 5000, 0.1, dtype=np.float64) + t2 = t1 + rnd_offset + s1 = np.sin(0.8 * t1) + np.sin(0.2 * t1) + s2 = np.sin(0.8 * t2) + np.sin(0.2 * t2) + now = pd.Timestamp.now() + index1 = now + pd.to_timedelta(t1, unit='s') + frame1 = pd.Series(s1, index=index1) + index2 = now + pd.to_timedelta(t2, unit='s') + frame2 = pd.Series(s2, index=index2) + + fnode = self.fc.createNode('ComputeDelay', pos=(0, 0)) + self.fc.connectTerminals(self.fc['s1'], fnode['s1']) + self.fc.connectTerminals(self.fc['s2'], fnode['s2']) + self.fc.connectTerminals(fnode['data_out'], self.fc['data_out']) + + result = self.fc.process(s1=frame1, s2=frame2) + res = result['data_out'] + + self.assertAlmostEqual(rnd_offset, -res, places=2) + + def test_compute_delay_timelike_index_raises(self): + rnd_offset = 1.1 + t1 = np.arange(0, 5000, 0.1, dtype=np.float64) + t2 = t1 + rnd_offset + s1 = np.sin(0.8 * t1) + np.sin(0.2 * t1) + s2 = np.sin(0.8 * t2) + np.sin(0.2 * t2) + now = pd.Timestamp.now() + index1 = now + pd.to_timedelta(t1, unit='s') + frame1 = pd.Series(s1, index=index1) + frame2 = s2 + + fnode = self.fc.createNode('ComputeDelay', pos=(0, 0)) + self.fc.connectTerminals(self.fc['s1'], fnode['s1']) + self.fc.connectTerminals(self.fc['s2'], fnode['s2']) + self.fc.connectTerminals(fnode['data_out'], self.fc['data_out']) + + msg_expected = 's2 has no index. Ignoring index for s1.' + with self.assertWarns(UserWarning, msg=msg_expected): + self.fc.process(s1=frame1, s2=frame2) + + frame1 = s1 + index2 = now + pd.to_timedelta(t2, unit='s') + frame2 = pd.Series(s2, index=index2) + + msg_expected = 's1 has no index. Ignoring index for s2.' + with self.assertWarns(UserWarning, msg=msg_expected): + self.fc.process(s1=frame1, s2=frame2) + + frame1 = pd.Series(s1, index=index1) + index2 = now + pd.to_timedelta(t2, unit='s') + frame2 = pd.Series(s2) + + msg_expected = ('Index of s2 is not a DateTimeIndex. Ignoring both ' + 'indexes.') + with self.assertWarns(UserWarning, msg=msg_expected): + self.fc.process(s1=frame1, s2=frame2) + + frame1 = pd.Series(s1) + index2 = now + pd.to_timedelta(t2, unit='s') + frame2 = pd.Series(s2, index=index2) + + msg_expected = ('Index of s1 is not a DateTimeIndex. Ignoring both ' + 'indexes.') + with self.assertWarns(UserWarning, msg=msg_expected): + self.fc.process(s1=frame1, s2=frame2) + + def test_shift_frame(self): + test_input = pd.Series(np.arange(10)) + index = pd.Timestamp.now() + pd.to_timedelta(np.arange(10), unit='s') + test_input.index = index + shifted_index = index.shift(110, freq='L') + expected = test_input.copy() + expected.index = shifted_index + + fnode = self.fc.createNode('ShiftFrame', pos=(0, 0)) + self.fc.connectTerminals(self.fc['s1'], fnode['frame']) + self.fc.connectTerminals(self.fc['s2'], fnode['delay']) + self.fc.connectTerminals(fnode['data_out'], self.fc['data_out']) + + result = self.fc.process(s1=test_input, s2=0.11) + res = result['data_out'] + + self.assertTrue(res.equals(expected)) diff --git a/tests/test_timesync.py b/tests/test_timesync.py new file mode 100644 index 0000000..854bfa2 --- /dev/null +++ b/tests/test_timesync.py @@ -0,0 +1,116 @@ +# coding: utf-8 + +from .context import dgp +import unittest +import numpy as np +import pandas as pd + +from dgp.lib.timesync import find_time_delay, shift_frame + + +class TestTimesync(unittest.TestCase): + def test_timedelay_array(self): + rnd_offset = 1.1 + t1 = np.arange(0, 5000, 0.1, dtype=np.float64) + t2 = t1 + rnd_offset + s1 = np.sin(0.8 * t1) + np.sin(0.2 * t1) + s2 = np.sin(0.8 * t2) + np.sin(0.2 * t2) + time = find_time_delay(s1, s2, 10) + self.assertAlmostEqual(rnd_offset, -time, places=2) + + def test_timedelay_timelike_index(self): + rnd_offset = 1.1 + now = pd.Timestamp.now() + t1 = np.arange(0, 5000, 0.1, dtype=np.float64) + index1 = pd.to_timedelta(t1, unit='s') + now + t2 = t1 + rnd_offset + index2 = pd.to_timedelta(t2, unit='s') + now + s1 = np.sin(0.8 * t1) + np.sin(0.2 * t1) + frame1 = pd.Series(s1, index=index1) + s2 = np.sin(0.8 * t2) + np.sin(0.2 * t2) + frame2 = pd.Series(s2, index=index2) + + time = find_time_delay(frame1, frame2) + self.assertAlmostEqual(rnd_offset, -time, places=2) + + def test_timedelay_warning(self): + rnd_offset = 1.1 + + t1 = np.arange(0, 5000, 0.1, dtype=np.float64) + t2 = t1 + rnd_offset + + s1 = np.sin(0.8 * t1) + np.sin(0.2 * t1) + index = pd.Timestamp.now() + pd.to_timedelta(t1, unit='s') + frame = pd.Series(s1, index=index) + s2 = np.sin(0.8 * t2) + np.sin(0.2 * t2) + + with self.assertWarns(UserWarning): + find_time_delay(frame, s2) + + def test_timedelay_ignore_indexes(self): + rnd_offset = 1.1 + t1 = np.arange(0, 5000, 0.1, dtype=np.float64) + t2 = t1 + rnd_offset + s1 = np.sin(0.8 * t1) + np.sin(0.2 * t1) + s2 = np.sin(0.8 * t2) + np.sin(0.2 * t2) + now = pd.Timestamp.now() + index1 = now + pd.to_timedelta(t1, unit='s') + frame1 = pd.Series(s1, index=index1) + frame2 = s2 + + msg_expected = 's2 has no index. Ignoring index for s1.' + with self.assertWarns(UserWarning, msg=msg_expected): + find_time_delay(frame1, frame2) + + frame1 = s1 + index2 = now + pd.to_timedelta(t2, unit='s') + frame2 = pd.Series(s2, index=index2) + + msg_expected = 's1 has no index. Ignoring index for s2.' + with self.assertWarns(UserWarning, msg=msg_expected): + find_time_delay(frame1, frame2) + + frame1 = pd.Series(s1, index=index1) + index2 = now + pd.to_timedelta(t2, unit='s') + frame2 = pd.Series(s2) + + msg_expected = ('Index of s2 is not a DateTimeIndex. Ignoring both ' + 'indexes.') + with self.assertWarns(UserWarning, msg=msg_expected): + find_time_delay(frame1, frame2) + + frame1 = pd.Series(s1) + index2 = now + pd.to_timedelta(t2, unit='s') + frame2 = pd.Series(s2, index=index2) + + msg_expected = ('Index of s1 is not a DateTimeIndex. Ignoring both ' + 'indexes.') + with self.assertWarns(UserWarning, msg=msg_expected): + find_time_delay(frame1, frame2) + + def test_timedelay_exceptions(self): + rnd_offset = 1.1 + now = pd.Timestamp.now() + t1 = np.arange(0, 5000, 0.1, dtype=np.float64) + index1 = pd.to_timedelta(t1, unit='s') + now + t2 = np.arange(0, 5000, 0.12, dtype=np.float64) + rnd_offset + index2 = pd.to_timedelta(t2, unit='s') + now + s1 = np.sin(0.8 * t1) + np.sin(0.2 * t1) + frame1 = pd.Series(s1, index=index1) + s2 = np.sin(0.8 * t2) + np.sin(0.2 * t2) + frame2 = pd.Series(s2, index=index2) + + msg_expected = 'Indexes have different frequencies' + with self.assertRaises(ValueError, msg=msg_expected): + find_time_delay(frame1, frame2) + + def test_shift_frame(self): + test_input = pd.Series(np.arange(10)) + index = pd.Timestamp.now() + pd.to_timedelta(np.arange(10), unit='s') + test_input.index = index + shifted_index = index.shift(110, freq='L') + expected = test_input.copy() + expected.index = shifted_index + + res = shift_frame(test_input, 0.11) + self.assertTrue(res.equals(expected)) From 6d4de6f5d7f107ddaa989b9060278860f9bf7c2c Mon Sep 17 00:00:00 2001 From: cbertinato Date: Tue, 6 Feb 2018 16:06:59 -0500 Subject: [PATCH 057/236] ENH: Added functionality to align and crop gravity and trajectory frames (#64) --- dgp/gui/main.py | 35 ++++++++- dgp/lib/etc.py | 124 ++++++++++++++++++++++++++++++ dgp/lib/gravity_ingestor.py | 10 ++- dgp/lib/project.py | 22 ++++++ dgp/lib/trajectory_ingestor.py | 3 + tests/test_etc.py | 136 +++++++++++++++++++++++++++++++++ tests/test_gravity_ingestor.py | 8 +- tests/test_plotters.py | 4 +- 8 files changed, 332 insertions(+), 10 deletions(-) create mode 100644 tests/test_etc.py diff --git a/dgp/gui/main.py b/dgp/gui/main.py index e751cbc..c4fa04d 100644 --- a/dgp/gui/main.py +++ b/dgp/gui/main.py @@ -26,6 +26,9 @@ AdvancedImportDialog, PropertiesDialog) from dgp.gui.models import ProjectModel from dgp.gui.widgets import FlightTab, TabWorkspace +from dgp.lib.etc import align_frames +from dgp.lib.trajectory_ingestor import TRAJECTORY_INTERP_FIELDS +from dgp.lib.gravity_ingestor import DGS_AT1A_INTERP_FIELDS # Load .ui form @@ -316,8 +319,7 @@ def show_progress_status(self, start, stop, label=None) -> QtWidgets.QProgressBa sb.addWidget(progress) return progress - @autosave - def add_data(self, data, dtype, flight, path): + def _add_data(self, data, dtype, flight, path): uid = dm.get_manager().save_data(dm.HDF5, data) if uid is None: self.log.error("Error occured writing DataFrame to HDF5 store.") @@ -327,6 +329,11 @@ def add_data(self, data, dtype, flight, path): ds = types.DataSource(uid, path, cols, dtype, x0=data.index.min(), x1=data.index.max()) flight.register_data(ds) + return ds + + @autosave + def add_data(self, data, dtype, flight, path): + ds = self._add_data(data, dtype, flight, path) if flight.uid not in self._open_tabs: # If flight is not opened we don't need to update the plot return @@ -359,6 +366,30 @@ def load_file(self, dtype, flight, **params): def _complete(data): self.add_data(data, dtype, flight, params.get('path', None)) + # align and crop gravity and trajectory frames if both are present + if flight.has_trajectory and flight.has_gravity: + # get datasource objects + gravity = flight.get_source(enums.DataTypes.GRAVITY) + trajectory = flight.get_source(enums.DataTypes.TRAJECTORY) + + # align and crop the gravity and trajectory frames + fields = DGS_AT1A_INTERP_FIELDS | TRAJECTORY_INTERP_FIELDS + new_gravity, new_trajectory = align_frames(gravity.load(), + trajectory.load(), + interp_only=fields) + + # replace datasource objects + ds_attr = {'path': gravity.filename, 'dtype': gravity.dtype} + flight.remove_data(gravity) + self._add_data(new_gravity, ds_attr['dtype'], flight, + ds_attr['path']) + + ds_attr = {'path': trajectory.filename, + 'dtype': trajectory.dtype} + flight.remove_data(trajectory) + self._add_data(new_trajectory, ds_attr['dtype'], flight, + ds_attr['path']) + def _result(result): err, exc = result prog.close() diff --git a/dgp/lib/etc.py b/dgp/lib/etc.py index 218192b..4730ff1 100644 --- a/dgp/lib/etc.py +++ b/dgp/lib/etc.py @@ -7,6 +7,130 @@ import numpy as np +def align_frames(frame1, frame2, align_to='left', interp_method='time', + interp_only=[], fill={}): + # TODO: Is there a more appropriate place for this function? + # TODO: Add ability to specify interpolation method per column. + # TODO: Ensure that dtypes are preserved unless interpolated. + """ + Align and crop two objects + + Parameters + ---------- + frame1: :obj:`DataFrame` or :obj:`Series + Must have a time-like index + frame1: :obj:`DataFrame` or :obj:`Series + Must have a time-like index + align_to: {'left', 'right'}, :obj:`DatetimeIndex` + Index to which data are aligned. + interp_method: {‘linear’, ‘time’, ‘index’, ‘values’, ‘nearest’, ‘zero’, + ‘slinear’, ‘quadratic’, ‘cubic’, ‘barycentric’, ‘krogh’, ‘polynomial’, + ‘spline’, ‘piecewise_polynomial’, ‘from_derivatives’, ‘pchip’, ‘akima’} + - ‘linear’: ignore the index and treat the values as equally spaced. + This is the only method supported on MultiIndexes. + - ‘time’: interpolation works on daily and higher resolution data to + interpolate given length of interval. default + - ‘index’, ‘values’: use the actual numerical values of the index + - ‘nearest’, ‘zero’, ‘slinear’, ‘quadratic’, ‘cubic’, ‘barycentric’, + ‘polynomial’ is passed to scipy.interpolate.interp1d. Both + ‘polynomial’ and ‘spline’ require that you also specify an order + (int), e.g. df.interpolate(method=’polynomial’, order=4). These + use the actual numerical values of the index. + - ‘krogh’, ‘piecewise_polynomial’, ‘spline’, ‘pchip’ and ‘akima’ are + all wrappers around the scipy interpolation methods of similar + names. These use the actual numerical values of the index. + For more information on their behavior, see the scipy + documentation and tutorial documentation + - ‘from_derivatives’ refers to BPoly.from_derivatives which replaces + ‘piecewise_polynomial’ interpolation method in scipy 0.18 + interp_only: set or list + If empty, then all columns except for those indicated in `fill` are + interpolated. Otherwise, only columns listed here are interpolated. + Any column not interpolated and not listed in `fill` is filled with + `ffill`. + fill: dict + Indicate which columns are not to be interpolated. Available fill + methods are {'bfill', 'ffill', None}, or specify a value to fill. + If a column is not present in the dictionary, then it will be + interpolated. + + Returns + ------- + (frame1, frame2) + Aligned and cropped objects + + Raises + ------ + ValueError + When frames do not overlap, and if an incorrect `align_to` argument + is given. + """ + def fill_nans(frame): + # TODO: Refactor this function to be less repetitive + if hasattr(frame, 'columns'): + for column in frame.columns: + if interp_only: + if column in interp_only: + frame[column] = frame[column].interpolate(method=interp_method) + elif column in fill.keys(): + if fill[column] in ('bfill', 'ffill'): + frame[column] = frame[column].fillna(method=fill[column]) + else: + # TODO: Validate value + frame[column] = frame[column].fillna(value=fill[column]) + else: + frame[column] = frame[column].fillna(method='ffill') + else: + if column not in fill.keys(): + frame[column] = frame[column].interpolate(method=interp_method) + else: + if fill[column] in ('bfill', 'ffill'): + frame[column] = frame[column].fillna(method=fill[column]) + else: + # TODO: Validate value + frame[column] = frame[column].fillna(value=fill[column]) + else: + frame = frame.interpolate(method=interp_method) + return frame + + if align_to not in ('left', 'right'): + raise ValueError('Invalid value for align_to parameter: {val}' + .format(val=align_to)) + + if frame1.index.min() >= frame2.index.max() \ + or frame1.index.max() <= frame2.index.min(): + raise ValueError('Frames do not overlap') + + if align_to == 'left': + new_index = frame1.index + elif align_to == 'right': + new_index = frame2.index + + left, right = frame1.align(frame2, axis=0, copy=True) + + left = fill_nans(left) + right = fill_nans(right) + + left = left.reindex(new_index).dropna() + right = right.reindex(new_index).dropna() + + # crop frames + if left.index.min() > right.index.min(): + begin = left.index.min() + else: + begin = right.index.min() + + if left.index.max() < right.index.max(): + end = left.index.max() + else: + end = right.index.max() + + left = left.loc[begin:end] + right = right.loc[begin:end] + + return left, right + + def interp_nans(y): nans = np.isnan(y) x = lambda z: z.nonzero()[0] diff --git a/dgp/lib/gravity_ingestor.py b/dgp/lib/gravity_ingestor.py index a371c71..11aa663 100644 --- a/dgp/lib/gravity_ingestor.py +++ b/dgp/lib/gravity_ingestor.py @@ -69,6 +69,10 @@ def _unpack_bits(n): return df +DGS_AT1A_INTERP_FIELDS = {'gravity', 'long_accel', 'cross_accel', 'beam', + 'temp', 'pressure', 'Etemp'} + + def read_at1a(path, columns=None, fill_with_nans=True, interp=False, skiprows=None): """ @@ -97,8 +101,9 @@ def read_at1a(path, columns=None, fill_with_nans=True, interp=False, pandas.DataFrame Gravity data indexed by datetime. """ - columns = columns or ['gravity', 'long', 'cross', 'beam', 'temp', 'status', - 'pressure', 'Etemp', 'GPSweek', 'GPSweekseconds'] + columns = columns or ['gravity', 'long_accel', 'cross_accel', 'beam', + 'temp', 'status', 'pressure', 'Etemp', 'GPSweek', + 'GPSweekseconds'] df = pd.read_csv(path, header=None, engine='c', na_filter=False, skiprows=skiprows) @@ -133,6 +138,7 @@ def read_at1a(path, columns=None, fill_with_nans=True, interp=False, index = pd.date_range(df.index[0], df.index[-1], freq=interval) df = df.reindex(index) + # TODO: Replace interp_nans with pandas interpolate if interp: numeric = df.select_dtypes(include=[np.number]) numeric = numeric.apply(interp_nans) diff --git a/dgp/lib/project.py b/dgp/lib/project.py index 959d5d8..40b5757 100644 --- a/dgp/lib/project.py +++ b/dgp/lib/project.py @@ -13,6 +13,8 @@ from .etc import gen_uuid from .types import DataSource, FlightLine, TreeItem from . import datamanager as dm +from .enums import DataTypes + """ Dynamic Gravity Processor (DGP) :: project.py License: Apache License V2 @@ -323,6 +325,8 @@ def __init__(self, project: GravityProject, name: str, parent=self, name='Data Files')) self._line_sequence = count() + self.has_gravity = False + self.has_trajectory = False def data(self, role): if role == QtDataRoles.ToolTipRole: @@ -347,18 +351,36 @@ def channels(self) -> list: rv.extend(source.get_channels()) return rv + def get_source(self, dtype: DataTypes) -> DataSource: + """Get the first DataSource of type 'dtype'""" + for source in self.get_child(self._data_uid): + if source.dtype == dtype: + return source + def register_data(self, datasrc: DataSource): """Register a data file for use by this Flight""" _log.info("Flight {} registering data source: {} UID: {}".format( self.name, datasrc.filename, datasrc.uid)) datasrc.flight = self self.get_child(self._data_uid).append_child(datasrc) + + # TODO: This check needs to be revised when considering multiple datasets per flight + if datasrc.dtype == DataTypes.GRAVITY: + self.has_gravity = True + elif datasrc.dtype == DataTypes.TRAJECTORY: + self.has_trajectory = True + # TODO: Hold off on this - breaks plot when we change source # print("Setting new Dsrc to active") # datasrc.active = True # self.update() def remove_data(self, datasrc: DataSource) -> bool: + # TODO: This check needs to be revised when considering multiple datasets per flight + if datasrc.dtype == DataTypes.GRAVITY: + self.has_gravity = False + elif datasrc.dtype == DataTypes.TRAJECTORY: + self.has_trajectory = False return self.get_child(self._data_uid).remove_child(datasrc) def add_line(self, line: FlightLine) -> int: diff --git a/dgp/lib/trajectory_ingestor.py b/dgp/lib/trajectory_ingestor.py index ad66a41..1c3856c 100644 --- a/dgp/lib/trajectory_ingestor.py +++ b/dgp/lib/trajectory_ingestor.py @@ -12,6 +12,9 @@ from .etc import interp_nans +TRAJECTORY_INTERP_FIELDS = {'lat', 'long', 'ell_ht'} + + def import_trajectory(filepath, delim_whitespace=False, interval=0, interp=False, is_utc=False, columns=None, skiprows=None, timeformat='sow'): diff --git a/tests/test_etc.py b/tests/test_etc.py new file mode 100644 index 0000000..a27de8c --- /dev/null +++ b/tests/test_etc.py @@ -0,0 +1,136 @@ +from .context import dgp +import unittest +import numpy as np +import pandas as pd + +from dgp.lib.etc import align_frames + + +class TestAlignOps(unittest.TestCase): + # TODO: Test with another DatetimeIndex + # TODO: Test with other interpolation methods + # TODO: Tests for interp_only + + def test_align_args(self): + frame1 = pd.Series(np.arange(10)) + index1 = pd.Timestamp('2018-01-29 15:19:28.000') + \ + pd.to_timedelta(np.arange(10), unit='s') + frame1.index = index1 + + frame2 = pd.Series(np.arange(10, 20)) + index2 = pd.Timestamp('2018-01-29 15:00:28.002') + \ + pd.to_timedelta(np.arange(10), unit='s') + frame2.index = index2 + + msg = 'Invalid value for align_to parameter: invalid' + with self.assertRaises(ValueError, msg=msg): + align_frames(frame1, frame2, align_to='invalid') + + msg = 'Frames do not overlap' + with self.assertRaises(ValueError, msg=msg): + align_frames(frame1, frame2) + + frame1 = pd.Series(np.arange(10)) + index1 = pd.Timestamp('2018-01-29 15:00:28.000') + \ + pd.to_timedelta(np.arange(10), unit='s') + frame1.index = index1 + + frame2 = pd.Series(np.arange(10, 20)) + index2 = pd.Timestamp('2018-01-29 15:19:28.002') + \ + pd.to_timedelta(np.arange(10), unit='s') + frame2.index = index2 + + msg = 'Frames do not overlap' + with self.assertRaises(ValueError, msg=msg): + align_frames(frame1, frame2) + + def test_align_crop(self): + frame1 = pd.Series(np.arange(10)) + index1 = pd.Timestamp('2018-01-29 15:19:30.000') + \ + pd.to_timedelta(np.arange(10), unit='s') + frame1.index = index1 + + frame2 = pd.Series(np.arange(10, 20)) + index2 = pd.Timestamp('2018-01-29 15:19:28.002') + \ + pd.to_timedelta(np.arange(10), unit='s') + frame2.index = index2 + + # align left + aframe1, aframe2 = align_frames(frame1, frame2, align_to='left') + self.assertTrue(aframe1.index.equals(aframe2.index)) + + # align right + aframe1, aframe2 = align_frames(frame1, frame2, align_to='right') + self.assertTrue(aframe1.index.equals(aframe2.index)) + + def test_align_and_crop_series(self): + frame1 = pd.Series(np.arange(10)) + index1 = pd.Timestamp('2018-01-29 15:19:28.000') + \ + pd.to_timedelta(np.arange(10), unit='s') + frame1.index = index1 + + frame2 = pd.Series(np.arange(10, 20)) + index2 = pd.Timestamp('2018-01-29 15:19:28.002') + \ + pd.to_timedelta(np.arange(10), unit='s') + frame2.index = index2 + + # align left + aframe1, aframe2 = align_frames(frame1, frame2, align_to='left') + self.assertTrue(aframe1.index.equals(aframe2.index)) + + # align right + aframe1, aframe2 = align_frames(frame1, frame2, align_to='right') + self.assertTrue(aframe1.index.equals(aframe2.index)) + + def test_align_and_crop_df(self): + frame1 = pd.DataFrame(np.array([np.arange(10), np.arange(10, 20)]).T) + index1 = pd.Timestamp('2018-01-29 15:19:28.000') + \ + pd.to_timedelta(np.arange(10), unit='s') + frame1.index = index1 + + frame2 = pd.DataFrame(np.array([np.arange(20,30), np.arange(30, 40)]).T) + index2 = pd.Timestamp('2018-01-29 15:19:28.002') + \ + pd.to_timedelta(np.arange(10), unit='s') + frame2.index = index2 + + # align left + aframe1, aframe2 = align_frames(frame1, frame2, align_to='left') + self.assertFalse(aframe1.index.empty) + self.assertFalse(aframe2.index.empty) + self.assertTrue(aframe1.index.equals(aframe2.index)) + + # align right + aframe1, aframe2 = align_frames(frame1, frame2, align_to='right') + self.assertFalse(aframe1.index.empty) + self.assertFalse(aframe2.index.empty) + self.assertTrue(aframe1.index.equals(aframe2.index)) + + def test_align_and_crop_df_fill(self): + frame1 = pd.DataFrame(np.array([np.arange(10), np.arange(10, 20)]).T) + frame1.columns = ['A', 'B'] + index1 = pd.Timestamp('2018-01-29 15:19:28.000') + \ + pd.to_timedelta(np.arange(10), unit='s') + frame1.index = index1 + + frame2 = pd.DataFrame(np.array([np.arange(20, 30), np.arange(30, 40)]).T) + frame2.columns = ['C', 'D'] + index2 = pd.Timestamp('2018-01-29 15:19:28.002') + \ + pd.to_timedelta(np.arange(10), unit='s') + frame2.index = index2 + + aframe1, aframe2 = align_frames(frame1, frame2, fill={'B': 'bfill'}) + self.assertTrue(aframe1['B'].equals(frame1['B'].iloc[1:].astype(float))) + + left, right = frame1.align(frame2, axis=0, copy=True) + left = left.fillna(method='bfill') + left = left.reindex(frame2.index).dropna() + aframe1, aframe2 = align_frames(frame1, frame2, align_to='right', + fill={'B': 'bfill'}) + self.assertTrue(aframe1['B'].equals(left['B'])) + + left, right = frame1.align(frame2, axis=0, copy=True) + left = left.fillna(value=0) + left = left.reindex(frame2.index).dropna() + aframe1, aframe2 = align_frames(frame1, frame2, align_to='right', + fill={'B': 0}) + self.assertTrue(aframe1['B'].equals(left['B'])) diff --git a/tests/test_gravity_ingestor.py b/tests/test_gravity_ingestor.py index a9abd60..1d81bdd 100644 --- a/tests/test_gravity_ingestor.py +++ b/tests/test_gravity_ingestor.py @@ -59,26 +59,26 @@ def test_import_at1a_no_fill_nans(self): df = gi.read_at1a(os.path.abspath('tests/sample_gravity.csv'), fill_with_nans=False) self.assertEqual(df.shape, (9, 26)) - fields = ['gravity', 'long', 'cross', 'beam', 'temp', 'status', 'pressure', 'Etemp', 'GPSweek', 'GPSweekseconds'] + fields = ['gravity', 'long_accel', 'cross_accel', 'beam', 'temp', 'status', 'pressure', 'Etemp', 'GPSweek', 'GPSweekseconds'] # Test and verify an arbitrary line of data against the same line in the pandas DataFrame line5 = [10061.171360, -0.026226, -0.094891, -0.093803, 62.253987, 21061, 39.690004, 52.263138, 1959, 219697.800] sample_line = dict(zip(fields, line5)) self.assertEqual(df.gravity[4], sample_line['gravity']) - self.assertEqual(df.long[4], sample_line['long']) + self.assertEqual(df.long_accel[4], sample_line['long_accel']) self.assertFalse(df.gps_sync[8]) def test_import_at1a_fill_nans(self): df = gi.read_at1a(os.path.abspath('tests/sample_gravity.csv')) self.assertEqual(df.shape, (9, 26)) - fields = ['gravity', 'long', 'cross', 'beam', 'temp', 'status', 'pressure', 'Etemp', 'GPSweek', 'GPSweekseconds'] + fields = ['gravity', 'long_accel', 'cross', 'beam', 'temp', 'status', 'pressure', 'Etemp', 'GPSweek', 'GPSweekseconds'] # Test and verify an arbitrary line of data against the same line in the pandas DataFrame line5 = [10061.171360, -0.026226, -0.094891, -0.093803, 62.253987, 21061, 39.690004, 52.263138, 1959, 219697.800] sample_line = dict(zip(fields, line5)) self.assertEqual(df.gravity[5], sample_line['gravity']) - self.assertEqual(df.long[5], sample_line['long']) + self.assertEqual(df.long_accel[5], sample_line['long_accel']) self.assertTrue(df.iloc[[2]].isnull().values.all()) def test_import_at1a_interp(self): diff --git a/tests/test_plotters.py b/tests/test_plotters.py index eaa4cc8..476d5c9 100644 --- a/tests/test_plotters.py +++ b/tests/test_plotters.py @@ -43,8 +43,8 @@ def setUp(self): self.dsrc = MockDataSource(self.df, 'abc', grav_path.name, self.df.keys(), DataTypes.GRAVITY, x0, x1) self.grav_ch = DataChannel('gravity', self.dsrc) - self.cross_ch = DataChannel('cross', self.dsrc) - self.long_ch = DataChannel('long', self.dsrc) + self.cross_ch = DataChannel('cross_accel', self.dsrc) + self.long_ch = DataChannel('long_accel', self.dsrc) self.plotter = BasicPlotter(rows=2) self.mgr = self.plotter.axmgr From 0759577ef04f27c0af44dfd7350be147d2d2e0cf Mon Sep 17 00:00:00 2001 From: Zachery Brady Date: Thu, 25 Jan 2018 14:57:06 -0700 Subject: [PATCH 058/236] Cleanup and rework of Channel Selection Feature CLN: Separate documentation requirements from main requirements.txt the idea being to include only the core requirements to execute the main program. CLN: Moved ProjectTreeView class out of main.py into its own views.py ENH: Changed working of channel selection for the main plot. The ChannelList Tree View is now acessible via a dialog box above the plot. This greatly reduces the complexity in the code as callbacks are no longer required to tie back into the main window. ENH: Add default channels to plot. The plot tab can now optionally plot a few default channels (e.g. Gravity, Long/Cross) to the main plot area if data is available when the tab is created. CLN: Refactored some names in widgets.py to better reflect the classes' purposes. E.g. TabWorkspace -> FlightWorkspace. FIX: Added def to catch and print stacktrace when GUI crashes due to unhandled python exception. WIP: Plotter work. Fixes to Widgets.py. Added central difference, eotvos, and test for eotvos. Added gradient derivative for testing Delete eotvos module and test Added basic graph functionality for the backend and some tests. --- .gitignore | 2 + dgp/__main__.py | 29 ++- dgp/gui/dialogs.py | 35 ++-- dgp/gui/main.py | 172 ++++------------- dgp/gui/models.py | 40 +++- dgp/gui/mplutils.py | 274 ++++++++++++++++++--------- dgp/gui/plotter2.py | 263 ++++++++++++++++++++++++++ dgp/gui/ui/channel_select_dialog.py | 39 ++++ dgp/gui/ui/channel_select_dialog.ui | 83 +++++++++ dgp/gui/ui/main_window.py | 89 ++++----- dgp/gui/ui/main_window.ui | 133 ++++++-------- dgp/gui/views.py | 105 +++++++++++ dgp/gui/widgets.py | 276 ++++++++++++++++------------ dgp/lib/project.py | 7 + dgp/lib/transform/__init__.py | 15 ++ dgp/lib/transform/display.py | 34 ++++ dgp/lib/transform/filters.py | 29 ++- dgp/lib/types.py | 3 + docs/requirements.txt | 33 ++++ examples/SimpleProcessing.py | 206 +++++++++++++++++++++ examples/plot2_prototype.py | 45 +++-- requirements.txt | 24 +-- tests/context.py | 18 +- tests/test_plotters.py | 4 +- 24 files changed, 1425 insertions(+), 533 deletions(-) create mode 100644 dgp/gui/plotter2.py create mode 100644 dgp/gui/ui/channel_select_dialog.py create mode 100644 dgp/gui/ui/channel_select_dialog.ui create mode 100644 dgp/gui/views.py create mode 100644 dgp/lib/transform/display.py create mode 100644 docs/requirements.txt create mode 100644 examples/SimpleProcessing.py diff --git a/.gitignore b/.gitignore index 67f3618..631d64c 100644 --- a/.gitignore +++ b/.gitignore @@ -11,8 +11,10 @@ __pycache__/ scratch/ venv/ docs/build/ +.cache/ # Specific Directives examples/local* tests/sample_data/eotvos_long_result.csv tests/sample_data/eotvos_long_input.txt +dgp/gui/ui/*.py diff --git a/dgp/__main__.py b/dgp/__main__.py index 01b8e7f..436b6ed 100644 --- a/dgp/__main__.py +++ b/dgp/__main__.py @@ -2,16 +2,37 @@ import os import sys +import traceback sys.path.append(os.path.dirname(__file__)) -from dgp import resources_rc +from PyQt5 import QtCore from PyQt5.QtWidgets import QApplication from dgp.gui.splash import SplashScreen -"""Program Main Entry Point - Loads SplashScreen GUI""" -if __name__ == "__main__": - # print("CWD: {}".format(os.getcwd())) + +def excepthook(type_, value, traceback_): + """This allows IDE to properly display unhandled exceptions which are + otherwise silently ignored as the application is terminated. + Override default excepthook with + >>> sys.excepthook = excepthook + + See: http://pyqt.sourceforge.net/Docs/PyQt5/incompatibilities.html + """ + traceback.print_exception(type_, value, traceback_) + QtCore.qFatal('') + + +app = None + + +def main(): + global app + sys.excepthook = excepthook app = QApplication(sys.argv) form = SplashScreen() sys.exit(app.exec_()) + + +if __name__ == "__main__": + main() diff --git a/dgp/gui/dialogs.py b/dgp/gui/dialogs.py index 3bb17c5..845ae56 100644 --- a/dgp/gui/dialogs.py +++ b/dgp/gui/dialogs.py @@ -18,14 +18,8 @@ from dgp.lib.etc import gen_uuid -from dgp.gui.ui import add_flight_dialog, advanced_data_import, edit_import_view, project_dialog - - -# data_dialog, _ = loadUiType('dgp/gui/ui/data_import_dialog.ui') -# advanced_import, _ = loadUiType('dgp/gui/ui/advanced_data_import.ui') -# edit_view, _ = loadUiType('dgp/gui/ui/edit_import_view.ui') -# flight_dialog, _ = loadUiType('dgp/gui/ui/add_flight_dialog.ui') -# project_dialog, _ = loadUiType('dgp/gui/ui/project_dialog.ui') +from dgp.gui.ui import (add_flight_dialog, advanced_data_import, + edit_import_view, project_dialog, channel_select_dialog) PATH_ERR = "Path cannot be empty." @@ -117,10 +111,14 @@ def show_message(self, message, buddy_label=None, log=None, hl_color='red', if log is not None: self.log.log(level=log, msg=message) - if target is None: - target = self.msg_target - else: - target = self.__getattribute__(target) + try: + if target is None: + target = self.msg_target + else: + target = self.__getattribute__(target) + except AttributeError: + self.log.error("No valid target available for show_message.") + return try: target.setText(message) @@ -416,9 +414,11 @@ def path(self, value): self.line_path.setText('None') return + print("Raw path value: ", value) self._path = pathlib.Path(value) self.line_path.setText(str(self._path.resolve())) if not self._path.exists(): + # Throws an OSError with windows network path self.log.warning(PATH_ERR) self.show_message(PATH_ERR, 'Path*', color='red') self.btn_edit_cols.setEnabled(False) @@ -594,6 +594,17 @@ def gravity(self): return None +class ChannelSelectionDialog(BaseDialog, + channel_select_dialog.Ui_ChannelSelection): + def __init__(self, parent=None): + super().__init__(msg_recvr=None, parent=parent) + self.setupUi(self) + + def set_model(self, model): + self.channel_treeview.setModel(model) + self.channel_treeview.expandAll() + + class CreateProjectDialog(BaseDialog, project_dialog.Ui_Dialog): def __init__(self, *args): super().__init__(msg_recvr='label_msg', *args) diff --git a/dgp/gui/main.py b/dgp/gui/main.py index e751cbc..e7e61a8 100644 --- a/dgp/gui/main.py +++ b/dgp/gui/main.py @@ -2,18 +2,15 @@ import os import pathlib -import functools import logging from typing import Union import PyQt5.QtCore as QtCore -import PyQt5.QtGui as QtGui import PyQt5.QtWidgets as QtWidgets -from PyQt5.QtWidgets import (QMainWindow, QAction, QMenu, QProgressDialog, - QFileDialog, QTreeView) -from PyQt5.QtCore import pyqtSignal, pyqtBoundSignal from PyQt5.QtGui import QColor -from PyQt5.uic import loadUiType +from PyQt5.QtCore import pyqtSignal, pyqtBoundSignal +from PyQt5.QtWidgets import QMainWindow, QProgressDialog, QFileDialog + import dgp.lib.project as prj import dgp.lib.types as types @@ -21,15 +18,11 @@ import dgp.gui.loader as loader import dgp.lib.datamanager as dm from dgp.gui.utils import (ConsoleHandler, LOG_FORMAT, LOG_LEVEL_MAP, - get_project_file) + LOG_COLOR_MAP, get_project_file) from dgp.gui.dialogs import (AddFlightDialog, CreateProjectDialog, - AdvancedImportDialog, PropertiesDialog) -from dgp.gui.models import ProjectModel -from dgp.gui.widgets import FlightTab, TabWorkspace - - -# Load .ui form -main_window, _ = loadUiType('dgp/gui/ui/main_window.ui') + AdvancedImportDialog) +from dgp.gui.widgets import FlightTab, FlightWorkspace +from dgp.gui.ui.main_window import Ui_MainWindow def autosave(method): @@ -46,7 +39,7 @@ def enclosed(self, *args, **kwargs): return enclosed -class MainWindow(QMainWindow, main_window): +class MainWindow(QMainWindow, Ui_MainWindow): """An instance of the Main Program Window""" # Define signals to allow updating of loading progress @@ -93,38 +86,30 @@ def __init__(self, project: Union[prj.GravityProject, """) # Initialize Variables - # self.import_base_path = pathlib.Path('../tests').resolve() self.import_base_path = pathlib.Path('~').expanduser().joinpath( 'Desktop') self._default_status_timeout = 5000 # Status Msg timeout in milli-sec # Issue #50 Flight Tabs - self._tabs = self.tab_workspace # type: TabWorkspace - # self._tabs = CustomTabWidget() + self._flight_tabs = self.flight_tabs # type: FlightWorkspace + # self._flight_tabs = CustomTabWidget() self._open_tabs = {} # Track opened tabs by {uid: tab_widget, ...} - self._context_tree = self.contextual_tree # type: QTreeView - self._context_tree.setRootIsDecorated(False) - self._context_tree.setIndentation(20) - self._context_tree.setItemsExpandable(False) # Initialize Project Tree Display - self.project_tree = ProjectTreeView(parent=self, project=self.project) - self.project_tree.setMinimumWidth(250) - self.project_tree.item_removed.connect(self._project_item_removed) - self.project_dock_grid.addWidget(self.project_tree, 0, 0, 1, 2) + self.project_tree.set_project(self.project) @property def current_flight(self) -> Union[prj.Flight, None]: """Returns the active flight based on which Flight Tab is in focus.""" - if self._tabs.count() > 0: - return self._tabs.currentWidget().flight + if self._flight_tabs.count() > 0: + return self._flight_tabs.currentWidget().flight return None @property def current_tab(self) -> Union[FlightTab, None]: """Get the active FlightTab (returns None if no Tabs are open)""" - if self._tabs.count() > 0: - return self._tabs.currentWidget() + if self._flight_tabs.count() > 0: + return self._flight_tabs.currentWidget() return None def load(self): @@ -161,6 +146,7 @@ def _init_slots(self): # Project Tree View Actions # self.project_tree.doubleClicked.connect(self._launch_tab) + self.project_tree.item_removed.connect(self._project_item_removed) # Project Control Buttons # self.prj_add_flight.clicked.connect(self.add_flight_dialog) @@ -171,8 +157,8 @@ def _init_slots(self): lambda: self.import_data_dialog(enums.DataTypes.GRAVITY)) # Tab Browser Actions # - self.tab_workspace.currentChanged.connect(self._tab_changed) - self.tab_workspace.tabCloseRequested.connect(self._tab_closed) + self._flight_tabs.currentChanged.connect(self._flight_tab_changed) + self._flight_tabs.tabCloseRequested.connect(self._tab_closed) # Console Window Actions # self.combo_console_verbosity.currentIndexChanged[str].connect( @@ -191,12 +177,7 @@ def set_logging_level(self, name: str): def write_console(self, text, level): """PyQt Slot: Logs a message to the GUI console""" - # TODO: log_color is defined elsewhere, use it. - log_color = {'DEBUG': QColor('DarkBlue'), 'INFO': QColor('Green'), - 'WARNING': QColor('Red'), 'ERROR': QColor('Pink'), - 'CRITICAL': QColor('Orange')}.get(level.upper(), - QColor('Black')) - + log_color = QColor(LOG_COLOR_MAP.get(level.lower(), 'black')) self.text_console.setTextColor(log_color) self.text_console.append(str(text)) self.text_console.verticalScrollBar().setValue( @@ -231,7 +212,7 @@ def _launch_tab(self, index: QtCore.QModelIndex=None, flight=None) -> None: return flight = item # type: prj.Flight if flight.uid in self._open_tabs: - self._tabs.setCurrentWidget(self._open_tabs[flight.uid]) + self._flight_tabs.setCurrentWidget(self._open_tabs[flight.uid]) self.project_tree.toggle_expand(index) return @@ -239,29 +220,31 @@ def _launch_tab(self, index: QtCore.QModelIndex=None, flight=None) -> None: new_tab = FlightTab(flight) new_tab.contextChanged.connect(self._update_context_tree) self._open_tabs[flight.uid] = new_tab - t_idx = self._tabs.addTab(new_tab, flight.name) - self._tabs.setCurrentIndex(t_idx) + t_idx = self._flight_tabs.addTab(new_tab, flight.name) + self._flight_tabs.setCurrentIndex(t_idx) def _tab_closed(self, index: int): # TODO: Should we delete the tab, or pop it off the stack to a cache? self.log.warning("Tab close requested for tab: {}".format(index)) - flight_id = self._tabs.widget(index).flight.uid - self._tabs.removeTab(index) + flight_id = self._flight_tabs.widget(index).flight.uid + self._flight_tabs.removeTab(index) tab = self._open_tabs.pop(flight_id) - def _tab_changed(self, index: int): - self.log.info("Tab changed to index: {}".format(index)) + def _flight_tab_changed(self, index: int): + self.log.info("Flight Tab changed to index: {}".format(index)) if index == -1: # If no tabs are displayed - self._context_tree.setModel(None) + # self._context_tree.setModel(None) return - tab = self._tabs.widget(index) # type: FlightTab - self._context_tree.setModel(tab.context_model) - self._context_tree.expandAll() + tab = self._flight_tabs.widget(index) # type: FlightTab + if tab.subtab_widget(): + print("Active flight subtab has a widget") + # self._context_tree.setModel(tab.context_model) + # self._context_tree.expandAll() def _update_context_tree(self, model): self.log.debug("Tab subcontext changed. Changing Tree Model") - self._context_tree.setModel(model) - self._context_tree.expandAll() + # self._context_tree.setModel(model) + # self._context_tree.expandAll() def _project_item_removed(self, item: types.BaseTreeItem): print("Got item: ", type(item), " in _prj_item_removed") @@ -457,90 +440,3 @@ def add_flight_dialog(self) -> None: return self.log.info("New flight creation aborted.") return - - -# TODO: Move this into new module (e.g. gui/views.py) -class ProjectTreeView(QTreeView): - item_removed = pyqtSignal(types.BaseTreeItem) - - def __init__(self, project=None, parent=None): - super().__init__(parent=parent) - - self._project = project - self.log = logging.getLogger(__name__) - - self.setMinimumSize(QtCore.QSize(0, 300)) - self.setAlternatingRowColors(False) - self.setAutoExpandDelay(1) - self.setExpandsOnDoubleClick(False) - self.setRootIsDecorated(False) - self.setUniformRowHeights(True) - self.setHeaderHidden(True) - self.setObjectName('project_tree') - self.setContextMenuPolicy(QtCore.Qt.DefaultContextMenu) - self._init_model() - - def _init_model(self): - """Initialize a new-style ProjectModel from models.py""" - model = ProjectModel(self._project, parent=self) - self.setModel(model) - self.expandAll() - - def toggle_expand(self, index): - self.setExpanded(index, (not self.isExpanded(index))) - - def contextMenuEvent(self, event: QtGui.QContextMenuEvent, *args, **kwargs): - # get the index of the item under the click event - context_ind = self.indexAt(event.pos()) - context_focus = self.model().itemFromIndex(context_ind) - - info_slot = functools.partial(self._info_action, context_focus) - plot_slot = functools.partial(self._plot_action, context_focus) - menu = QMenu() - info_action = QAction("Properties") - info_action.triggered.connect(info_slot) - plot_action = QAction("Plot in new window") - plot_action.triggered.connect(plot_slot) - if isinstance(context_focus, types.DataSource): - data_action = QAction("Set Active Data File") - # TODO: Work on this later, it breaks plotter currently - # data_action.triggered.connect( - # lambda item: context_focus.__setattr__('active', True) - # ) - menu.addAction(data_action) - data_delete = QAction("Delete Data File") - data_delete.triggered.connect( - lambda: self._remove_data_action(context_focus)) - menu.addAction(data_delete) - - menu.addAction(info_action) - menu.addAction(plot_action) - menu.exec_(event.globalPos()) - event.accept() - - def _plot_action(self, item): - return - - def _info_action(self, item): - dlg = PropertiesDialog(item, parent=self) - dlg.exec_() - - def _remove_data_action(self, item: types.BaseTreeItem): - if not isinstance(item, types.DataSource): - return - # Confirmation Dialog - confirm = QtWidgets.QMessageBox(parent=self.parent()) - confirm.setStandardButtons(QtWidgets.QMessageBox.Ok) - confirm.setText("Are you sure you wish to delete: {}".format(item.filename)) - confirm.setIcon(QtWidgets.QMessageBox.Question) - confirm.setWindowTitle("Confirm Delete") - res = confirm.exec_() - if res: - print("Emitting item_removed signal") - self.item_removed.emit(item) - print("removing item from its flight") - try: - item.flight.remove_data(item) - except: - print("Exception occured removing item from flight") - diff --git a/dgp/gui/models.py b/dgp/gui/models.py index 1c26c79..b1a08c8 100644 --- a/dgp/gui/models.py +++ b/dgp/gui/models.py @@ -422,6 +422,36 @@ def __init__(self, channels: List[DataChannel], plots: int, parent=None): self.channels = {} self.add_channels(*channels) + def move_channel(self, uid: str, dest_row: int): + """Used to programatically move a channel by uid to the header at + index: dest_row""" + print("in move_channel") + channel = self.channels.get(uid, None) + if channel is None: + return False + print("moving channel: ", channel) + + src_index = self.index(channel.parent.row(), 0) + self.beginRemoveRows(src_index, channel.row(), channel.row()) + channel.orphan() + self.endRemoveRows() + + if dest_row == -1: + dest = self._plots[0] + else: + dest = self._plots.get(dest_row, self._default) + + dest_idx = self.index(dest.row(), col=1) + + # Add channel to new parent/header + self.beginInsertRows(dest_idx, dest.row(), dest.row()) + dest.append_child(channel) + self.endInsertRows() + + self.channelChanged.emit(dest.index, channel) + self.update() + return True + def add_channels(self, *channels): """Build the model representation""" for dc in channels: # type: DataChannel @@ -430,7 +460,6 @@ def add_channels(self, *channels): self.update() def remove_source(self, dsrc): - print("Remove source called in CLM") for channel in self.channels: # type: DataChannel _log.debug("Orphaning and removing channel: {name}/{uid}".format( name=channel.label, uid=channel.uid)) @@ -555,13 +584,10 @@ def dropMimeData(self, data: QMimeData, action, row, col, self.endRemoveRows() if row == -1: - n_row = 0 - else: - n_row = row + row = 0 # Add channel to new parent/header - self.beginInsertRows(parent, n_row, n_row) - # destination.append_child(dc) - destination.insert_child(dc, n_row) + self.beginInsertRows(parent, row, row) + destination.insert_child(dc, row) self.endInsertRows() self.channelChanged.emit(destination.index, dc) diff --git a/dgp/gui/mplutils.py b/dgp/gui/mplutils.py index 0495934..54929e5 100644 --- a/dgp/gui/mplutils.py +++ b/dgp/gui/mplutils.py @@ -3,11 +3,11 @@ # PROTOTYPE for new Axes Manager class import logging -from collections import namedtuple from itertools import cycle, count, chain -from typing import Union, Tuple +from typing import Union, Tuple, Dict, List from datetime import datetime, timedelta +from PyQt5 import QtCore from pandas import Series from matplotlib.figure import Figure from matplotlib.axes import Axes @@ -16,12 +16,14 @@ from matplotlib.lines import Line2D from matplotlib.patches import Patch, Rectangle from matplotlib.gridspec import GridSpec +from matplotlib.backend_bases import MouseEvent, PickEvent from mpl_toolkits.axes_grid1.inset_locator import inset_axes from dgp.lib.etc import gen_uuid +__all__ = ['StackedAxesManager', 'PatchManager', 'RectanglePatchGroup'] _log = logging.getLogger(__name__) -EDGE_PROX = 0.005 +EDGE_PROX = 0.002 """ Notes/Thoughts WIP: @@ -99,7 +101,7 @@ class StackedAxesManager: """ def __init__(self, figure, rows=1, xformatter=None): self.figure = figure - self.axes = {} + self.axes = {} # type: Dict[int: (Axes, Axes)] self._axes_color = {} self._inset_axes = {} @@ -144,12 +146,14 @@ def __len__(self): """Return number of primary Axes managed by this Class""" return len(self.axes) - def __contains__(self, uid): - """Check if given UID refers to an active Line2D Class""" - return uid in self._lines + def __contains__(self, axes): + flat = chain(*self.axes.values()) + return axes in flat - def __getitem__(self, index): + def __getitem__(self, index) -> Tuple[Axes, Axes]: """Return (Axes, Twin) pair at the given row index.""" + if index not in self.axes: + raise IndexError return self.axes[index] # Experimental @@ -338,7 +342,7 @@ def get_ylim(self, idx, twin=False): return self.axes[idx].get_ylim() # TODO: Resample logic - def resample(self, step): + def subsample(self, step): """Resample all lines in all Axes by slicing with step.""" pass @@ -380,6 +384,95 @@ def reset_view(self, x_margin=None, y_margin=None): self.set_xlim(min_x0, max_x1) +class PatchManager: + def __init__(self, parent=None): + self.patchgroups = [] # type: List[RectanglePatchGroup] + self._active = None + self._x0 = None # X location when active group was selected + self.parent = parent + + @property + def active(self) -> Union[None, 'RectanglePatchGroup']: + return self._active + + @property + def groups(self): + """Return a sorted list of patchgroups by patch x location.""" + return sorted(self.patchgroups, key=lambda pg: pg.x) + + def valid_click(self, xdata, proximity=0.05): + """Return True if xdata is a valid location to place a new patch + group, False if it is too close to an existing patch.""" + pass + + def add_group(self, group: 'RectanglePatchGroup'): + self.patchgroups.append(group) + + def select(self, xdata, inner=True) -> bool: + self.deselect() + for pg in self.groups: + if xdata in pg: + pg.animate(xdata) + self._active = pg + self._x0 = xdata + break + else: + self._x0 = None + + return self._active is not None + + def deselect(self) -> None: + if self._active is not None: + self._active.unanimate() + self._active = None + + def rescale_patches(self): + for group in self.patchgroups: + group.fit_height() + + def onmotion(self, event: MouseEvent) -> None: + if event.xdata is None: + return + if self.active is None: + self.highlight_edge(event.xdata) + event.canvas.draw() + else: + dx = event.xdata - self._x0 + self.active.shift_x(dx) + + def highlight_edge(self, xdata: float) -> None: + """ + Called on motion event if a patch isn't selected. Highlight the edge + of a patch if it is under the mouse location. + Return all other edges to black + + Parameters + ---------- + xdata : float + Mouse x-location in plot data coordinates + + """ + edge_grp = None + self.parent.setCursor(QtCore.Qt.ArrowCursor) + for group in self.groups: + edge = group.get_edge(xdata, inner=False) + if edge in ('left', 'right'): + + edge_grp = group + self.parent.setCursor(QtCore.Qt.SizeHorCursor) + group.set_edge(edge, 'red', select=False) + break + else: + # group.set_edge('', 'black', select=False) + self.parent.setCursor(QtCore.Qt.PointingHandCursor) + + for group in self.patchgroups: + if group is edge_grp: + continue + else: + group.set_edge('', 'black', select=False) + + class RectanglePatchGroup: """ Group related matplotlib Rectangle Patches which share an x axis on @@ -398,7 +491,7 @@ class RectanglePatchGroup: def __init__(self, *patches, label: str='', uid=None): self.uid = uid or gen_uuid('ptc') self.label = label - self.modified = False + self._modified = False self.animated = False self._patches = {i: patch for i, patch in enumerate(patches)} @@ -411,11 +504,14 @@ def __init__(self, *patches, label: str='', uid=None): self._width = 0 self._stretching = None + self.fit_height() + + def __contains__(self, x): + return self.x <= x <= self.x + self.width + @property - def x(self): - if self._p0 is None: - return None - return self._p0.get_x() + def modified(self): + return self._modified @property def stretching(self): @@ -427,6 +523,70 @@ def width(self): same width)""" return self._p0.get_width() + @property + def x(self): + if self._p0 is None: + return None + return self._p0.get_x() + + def animate(self, xdata=None) -> None: + """ + Animate all artists contained in this PatchGroup, and record the x + location of the group. + Matplotlibs Artist.set_animated serves to remove the artists from the + canvas bbox, so that we can copy a rasterized bbox of the rest of the + canvas and then blit it back as we move or modify the animated artists. + This means that a complete redraw only has to be done for the + selected artists, not the entire canvas. + + """ + _log.debug("Animating patches") + if self._p0 is None: + raise AttributeError("No patches exist") + self._x0 = self._p0.get_x() + self._width = self._p0.get_width() + edge = self.get_edge(xdata, inner=False) + self.set_edge(edge, color='red', select=True) + + for i, patch in self._patches.items(): # type: int, Rectangle + patch.set_animated(True) + try: + self._labels[i].set_animated(True) + except KeyError: + pass + canvas = patch.figure.canvas + # Need to draw the canvas once after animating to remove the + # animated patch from the bbox - but this introduces significant + # lag between the mouse click and the beginning of the animation. + # canvas.draw() + bg = canvas.copy_from_bbox(patch.axes.bbox) + self._bgs[i] = bg + canvas.restore_region(bg) + patch.axes.draw_artist(patch) + canvas.blit(patch.axes.bbox) + + self.animated = True + return + + def unanimate(self) -> None: + if not self.animated: + return + for patch in self._patches.values(): + patch.set_animated(False) + for label in self._labels.values(): + label.set_animated(False) + + self._bgs = {} + self._stretching = None + self.animated = False + self._modified = False + + # def add_patch(self, plot_index: int, patch: Rectangle): + # if not len(self._patches): + # Record attributes of first added patch for reference + # self._p0 = patch + # self._patches[plot_index] = patch + def hide(self): for item in chain(self._patches.values(), self._labels.values()): item.set_visible(False) @@ -443,11 +603,6 @@ def contains(self, xdata, prox=EDGE_PROX): width = self._p0.get_width() return x0 - prox <= xdata <= x0 + width + prox - def add_patch(self, plot_index: int, patch: Rectangle): - if not len(self._patches): - # Record attributes of first added patch for reference - self._p0 = patch - self._patches[plot_index] = patch def remove(self): """Delete this patch group and associated labels from the axes's""" @@ -493,58 +648,6 @@ def set_edge(self, edge: str, color: str, select: bool=False): if patch.get_edgecolor() != color: patch.set_edgecolor(color) patch.axes.draw_artist(patch) - else: - break - - def animate(self) -> None: - """ - Animate all artists contained in this PatchGroup, and record the x - location of the group. - Matplotlibs Artist.set_animated serves to remove the artists from the - canvas bbox, so that we can copy a rasterized bbox of the rest of the - canvas and then blit it back as we move or modify the animated artists. - This means that a complete redraw only has to be done for the - selected artists, not the entire canvas. - - """ - _log.debug("Animating patches") - if self._p0 is None: - raise AttributeError("No patches exist") - self._x0 = self._p0.get_x() - self._width = self._p0.get_width() - - for i, patch in self._patches.items(): # type: int, Rectangle - patch.set_animated(True) - try: - self._labels[i].set_animated(True) - except KeyError: - pass - canvas = patch.figure.canvas - # Need to draw the canvas once after animating to remove the - # animated patch from the bbox - but this introduces significant - # lag between the mouse click and the beginning of the animation. - # canvas.draw() - bg = canvas.copy_from_bbox(patch.axes.bbox) - self._bgs[i] = bg - canvas.restore_region(bg) - patch.axes.draw_artist(patch) - canvas.blit(patch.axes.bbox) - - self.animated = True - return - - def unanimate(self) -> None: - if not self.animated: - return - for patch in self._patches.values(): - patch.set_animated(False) - for label in self._labels.values(): - label.set_animated(False) - - self._bgs = {} - self._stretching = False - self.animated = False - return def set_label(self, label: str, index=None) -> None: """ @@ -583,7 +686,17 @@ def set_label(self, label: str, index=None) -> None: va='center', annotation_clip=False) self._labels[i] = annotation - self.modified = True + self._modified = True + + def fit_height(self) -> None: + """Adjust Height based on axes limits""" + for i, patch in self._patches.items(): + ylims = patch.axes.get_ylim() + height = abs(ylims[1]) + abs(ylims[0]) + patch.set_y(ylims[0]) + patch.set_height(height) + patch.axes.draw_artist(patch) + self._move_label(i, *self._patch_center(patch)) def shift_x(self, dx) -> None: """ @@ -597,7 +710,7 @@ def shift_x(self, dx) -> None: group """ - if self._stretching is not None: + if self._stretching in ('left', 'right'): return self._stretch(dx) for i in self._patches: patch = self._patches[i] # type: Rectangle @@ -612,17 +725,7 @@ def shift_x(self, dx) -> None: self._move_label(i, cx, cy) canvas.blit(patch.axes.bbox) - self.modified = True - - def fit_height(self) -> None: - """Adjust Height based on axes limits""" - for i, patch in self._patches.items(): - ylims = patch.axes.get_ylim() - height = abs(ylims[1]) + abs(ylims[0]) - patch.set_y(ylims[0]) - patch.set_height(height) - patch.axes.draw_artist(patch) - self._move_label(i, *self._patch_center(patch)) + self._modified = True def _stretch(self, dx) -> None: if self._p0 is None: @@ -645,10 +748,9 @@ def _stretch(self, dx) -> None: canvas.restore_region(self._bgs[i]) axes.draw_artist(patch) self._move_label(i, cx, cy) - canvas.blit(axes.bbox) - self.modified = True + self._modified = True def _move_label(self, index, x, y) -> None: """ diff --git a/dgp/gui/plotter2.py b/dgp/gui/plotter2.py new file mode 100644 index 0000000..14df296 --- /dev/null +++ b/dgp/gui/plotter2.py @@ -0,0 +1,263 @@ +# coding: utf-8 + +# PROTOTYPE new LineGrabPlot class based on mplutils utility classes +import logging + +import matplotlib as mpl +from PyQt5.QtWidgets import QSizePolicy, QMenu, QAction, QWidget, QToolBar +from PyQt5.QtCore import pyqtSignal, QMimeData +from PyQt5.QtGui import QCursor, QDropEvent, QDragEnterEvent, QDragMoveEvent +import PyQt5.QtCore as QtCore +import PyQt5.QtWidgets as QtWidgets +from matplotlib.backends.backend_qt5agg import ( + FigureCanvasQTAgg as FigureCanvas, NavigationToolbar2QT) +from matplotlib.figure import Figure +from matplotlib.axes import Axes +from matplotlib.dates import DateFormatter, num2date, date2num +from matplotlib.ticker import NullFormatter, NullLocator, AutoLocator +from matplotlib.backend_bases import MouseEvent, PickEvent +from matplotlib.patches import Rectangle +from matplotlib.lines import Line2D +from matplotlib.text import Annotation +import numpy as np + +from dgp.lib.project import Flight + +from ..lib.types import DataChannel, LineUpdate +from .mplutils import * + + +_log = logging.getLogger(__name__) + +####### +# WIP # +####### + + +"""Design Requirements of FlightLinePlot: + +Use Case: +FlightLinePlot (FLP) is designed for a specific use case, where the user may +plot raw Gravity and GPS data channels on a synchronized x-axis plot in order to +select distinct 'lines' of data (where the Ship or Aircraft has turned to +another heading). + +Requirements: + - Able to display 2-4 plots displayed in a row with a linked x-axis scale. + - Each plot must have dual y-axis scales and should limit the number of lines +plotted to 1 per y-axis to allow for plotting of different channels of widely +varying amplitudes. +- User can enable a 'line selection mode' which allows the user to +graphically specify flight lines through the following functionality: + - On click, a new semi-transparent rectangle 'patch' is created across all + visible axes. If there is no patch in the area already. + - On drag of a patch, it should follow the mouse, allowing the user to + adjust its position. + - On click and drag of the edge of any patch it should resize to the extent + of the movement, allowing the user to resize the patches. + - On right-click of a patch, a context menu should be displayed allowing + user to label, or delete, or specify precise (spinbox) x/y limits of the patch + +""" + +__all__ = ['FlightLinePlot'] + + +class BasePlottingCanvas(FigureCanvas): + """ + BasePlottingCanvas sets up the basic Qt FigureCanvas parameters, and is + designed to be subclassed for different plot types. + Mouse events are connected to the canvas here, and the handlers should be + overriden in sub-classes to provide custom actions. + """ + def __init__(self, parent=None, width=8, height=4, dpi=100): + super().__init__(Figure(figsize=(width, height), dpi=dpi, + tight_layout=True)) + + self.setParent(parent) + super().setSizePolicy(QSizePolicy.Expanding, QSizePolicy.Expanding) + super().updateGeometry() + + self.figure.canvas.mpl_connect('pick_event', self.onpick) + self.figure.canvas.mpl_connect('button_press_event', self.onclick) + self.figure.canvas.mpl_connect('button_release_event', self.onrelease) + self.figure.canvas.mpl_connect('motion_notify_event', self.onmotion) + + def onclick(self, event: MouseEvent): + pass + + def onrelease(self, event: MouseEvent): + pass + + def onmotion(self, event: MouseEvent): + pass + + def onpick(self, event: PickEvent): + pass + + +class FlightLinePlot(BasePlottingCanvas): + linechanged = pyqtSignal(LineUpdate) + + def __init__(self, flight, rows=3, width=8, height=4, dpi=100, + parent=None, **kwargs): + _log.debug("Initializing FlightLinePlot") + super().__init__(parent=parent, width=width, height=height, dpi=dpi) + + self._flight = flight + self.mgr = kwargs.get('axes_mgr', None) or StackedAxesManager( + self.figure, rows=rows) + self.pm = kwargs.get('patch_mgr', None) or PatchManager(parent=parent) + + self._home_action = QAction("Home") + self._home_action.triggered.connect(lambda *args: print("Home Clicked")) + self._zooming = False + self._panning = False + self._grab_lines = False + self._toolbar = None + + def set_mode(self, grab=True): + self._grab_lines = grab + + def get_toolbar(self, home_callback=None): + """Configure and return the Matplotlib Toolbar used to interactively + control the plot area. + Here we replace the default MPL Home action with a custom action, + and attach additional callbacks to the Pan and Zoom buttons. + """ + if self._toolbar is not None: + return self._toolbar + + def toggle(action): + if action.lower() == 'zoom': + print("Toggling zoom") + self._panning = False + self._zooming = not self._zooming + elif action.lower() == 'pan': + print("Toggling Pan") + self._zooming = False + self._panning = not self._panning + else: + self._zooming = False + self._panning = False + + tb = NavigationToolbar2QT(self, parent=None) + _home = tb.actions()[0] + + new_home = QAction(_home.icon(), "Home", parent=tb) + home_callback = home_callback or (lambda *args: None) + new_home.triggered.connect(home_callback) + new_home.setToolTip("Reset View") + tb.insertAction(_home, new_home) + tb.removeAction(_home) + + tb.actions()[4].triggered.connect(lambda x: toggle('pan')) + tb.actions()[5].triggered.connect(lambda x: toggle('zoom')) + self._toolbar = tb + return tb + + def add_series(self, channel: DataChannel, row=0, draw=True): + self.mgr.add_series(channel.series(), row=row, uid=channel.uid) + + def onclick(self, event: MouseEvent): + if not self._grab_lines or self._zooming or self._panning: + print("Not in correct mode") + return + # If the event didn't occur within an Axes, ignore it + if event.inaxes not in self.mgr: + return + + # Else, process the click event + # Get the patch group at click loc if it exists + active = self.pm.select(event.xdata, inner=False) + print("Active group: ", active) + + # Right Button + if event.button == 3 and active: + cursor = QCursor() + self._pop_menu.popup(cursor.pos()) + return + + # Left Button + elif event.button == 1 and not active: + print("Creating new patch group") + patches = [] + for ax, twin in self.mgr: + xmin, xmax = ax.get_xlim() + width = (xmax - xmin) * 0.05 + x0 = event.xdata - width / 2 + y0, y1 = ax.get_ylim() + rect = Rectangle((x0, y0), width, height=1, alpha=0.1, + edgecolor='black', linewidth=2, picker=True) + patch = ax.add_patch(rect) + patch.set_picker(True) + ax.draw_artist(patch) + patches.append(patch) + pg = RectanglePatchGroup(*patches) + self.pm.add_group(pg) + self.draw() + + if self._flight.uid is not None: + self.linechanged.emit( + LineUpdate(flight_id=self._flight.uid, + action='add', + uid=pg.uid, + start=pg.start(), + stop=pg.stop(), + label=None)) + return + # Middle Button/Misc Button + else: + return + + def onmotion(self, event: MouseEvent) -> None: + """ + Event Handler: Pass any motion events to the AxesGroup to handle, + as long as the user is not Panning or Zooming. + + Parameters + ---------- + event : MouseEvent + Matplotlib MouseEvent object with event parameters + + Returns + ------- + None + + """ + if self._zooming or self._panning: + return + self.pm.onmotion(event) + + def onrelease(self, event: MouseEvent) -> None: + """ + Event Handler: Process event and emit any changes made to the active + Patch group (if any) upon mouse release. + + Parameters + ---------- + event : MouseEvent + Matplotlib MouseEvent object with event parameters + + Returns + ------- + None + + """ + if self._zooming or self._panning: + self.pm.rescale_patches() + self.draw() + return + + active = self.pm.active + if active is not None: + if active.modified: + self.linechanged.emit( + LineUpdate(flight_id=self._flight.uid, + action='modify', + uid=active.uid, + start=active.start(), + stop=active.stop(), + label=active.label)) + self.pm.deselect() + self.figure.canvas.draw() diff --git a/dgp/gui/ui/channel_select_dialog.py b/dgp/gui/ui/channel_select_dialog.py new file mode 100644 index 0000000..8011364 --- /dev/null +++ b/dgp/gui/ui/channel_select_dialog.py @@ -0,0 +1,39 @@ +# -*- coding: utf-8 -*- + +# Form implementation generated from reading ui file 'dgp/gui/ui\channel_select_dialog.ui' +# +# Created by: PyQt5 UI code generator 5.9 +# +# WARNING! All changes made in this file will be lost! + +from PyQt5 import QtCore, QtGui, QtWidgets + +class Ui_ChannelSelection(object): + def setupUi(self, ChannelSelection): + ChannelSelection.setObjectName("ChannelSelection") + ChannelSelection.resize(304, 300) + self.verticalLayout = QtWidgets.QVBoxLayout(ChannelSelection) + self.verticalLayout.setObjectName("verticalLayout") + self.channel_treeview = QtWidgets.QTreeView(ChannelSelection) + self.channel_treeview.setDragEnabled(True) + self.channel_treeview.setDragDropMode(QtWidgets.QAbstractItemView.InternalMove) + self.channel_treeview.setDefaultDropAction(QtCore.Qt.MoveAction) + self.channel_treeview.setUniformRowHeights(True) + self.channel_treeview.setObjectName("channel_treeview") + self.channel_treeview.header().setVisible(False) + self.verticalLayout.addWidget(self.channel_treeview) + self.dialog_buttons = QtWidgets.QDialogButtonBox(ChannelSelection) + self.dialog_buttons.setOrientation(QtCore.Qt.Horizontal) + self.dialog_buttons.setStandardButtons(QtWidgets.QDialogButtonBox.Close|QtWidgets.QDialogButtonBox.Reset) + self.dialog_buttons.setObjectName("dialog_buttons") + self.verticalLayout.addWidget(self.dialog_buttons) + + self.retranslateUi(ChannelSelection) + self.dialog_buttons.accepted.connect(ChannelSelection.accept) + self.dialog_buttons.rejected.connect(ChannelSelection.reject) + QtCore.QMetaObject.connectSlotsByName(ChannelSelection) + + def retranslateUi(self, ChannelSelection): + _translate = QtCore.QCoreApplication.translate + ChannelSelection.setWindowTitle(_translate("ChannelSelection", "Select Data Channels")) + diff --git a/dgp/gui/ui/channel_select_dialog.ui b/dgp/gui/ui/channel_select_dialog.ui new file mode 100644 index 0000000..1076b78 --- /dev/null +++ b/dgp/gui/ui/channel_select_dialog.ui @@ -0,0 +1,83 @@ + + + ChannelSelection + + + + 0 + 0 + 304 + 300 + + + + Select Data Channels + + + + + + true + + + QAbstractItemView::InternalMove + + + Qt::MoveAction + + + true + + + false + + + + + + + Qt::Horizontal + + + QDialogButtonBox::Close|QDialogButtonBox::Reset + + + + + + + + + dialog_buttons + accepted() + ChannelSelection + accept() + + + 248 + 254 + + + 157 + 274 + + + + + dialog_buttons + rejected() + ChannelSelection + reject() + + + 316 + 260 + + + 286 + 274 + + + + + diff --git a/dgp/gui/ui/main_window.py b/dgp/gui/ui/main_window.py index d8e7502..9ad4d6d 100644 --- a/dgp/gui/ui/main_window.py +++ b/dgp/gui/ui/main_window.py @@ -22,9 +22,9 @@ def setupUi(self, MainWindow): self.horizontalLayout = QtWidgets.QHBoxLayout(self.centralwidget) self.horizontalLayout.setContentsMargins(0, 0, 0, 0) self.horizontalLayout.setObjectName("horizontalLayout") - self.tab_workspace = TabWorkspace(self.centralwidget) - self.tab_workspace.setObjectName("tab_workspace") - self.horizontalLayout.addWidget(self.tab_workspace) + self.flight_tabs = FlightWorkspace(self.centralwidget) + self.flight_tabs.setObjectName("flight_tabs") + self.horizontalLayout.addWidget(self.flight_tabs) MainWindow.setCentralWidget(self.centralwidget) self.menubar = QtWidgets.QMenuBar(MainWindow) self.menubar.setGeometry(QtCore.QRect(0, 0, 1490, 21)) @@ -50,7 +50,7 @@ def setupUi(self, MainWindow): sizePolicy.setVerticalStretch(0) sizePolicy.setHeightForWidth(self.project_dock.sizePolicy().hasHeightForWidth()) self.project_dock.setSizePolicy(sizePolicy) - self.project_dock.setMinimumSize(QtCore.QSize(359, 262)) + self.project_dock.setMinimumSize(QtCore.QSize(0, 0)) self.project_dock.setMaximumSize(QtCore.QSize(524287, 524287)) self.project_dock.setAllowedAreas(QtCore.Qt.LeftDockWidgetArea|QtCore.Qt.RightDockWidgetArea) self.project_dock.setObjectName("project_dock") @@ -72,40 +72,34 @@ def setupUi(self, MainWindow): self.label_prj_info = QtWidgets.QLabel(self.project_dock_contents) self.label_prj_info.setObjectName("label_prj_info") self.project_dock_grid.addWidget(self.label_prj_info, 0, 0, 1, 1) - self.prj_add_flight = QtWidgets.QPushButton(self.project_dock_contents) + self.prj_import_grav = QtWidgets.QPushButton(self.project_dock_contents) icon1 = QtGui.QIcon() - icon1.addPixmap(QtGui.QPixmap(":/icons/airborne"), QtGui.QIcon.Normal, QtGui.QIcon.Off) - self.prj_add_flight.setIcon(icon1) + icon1.addPixmap(QtGui.QPixmap(":/icons/gravity"), QtGui.QIcon.Normal, QtGui.QIcon.Off) + self.prj_import_grav.setIcon(icon1) + self.prj_import_grav.setIconSize(QtCore.QSize(16, 16)) + self.prj_import_grav.setObjectName("prj_import_grav") + self.project_dock_grid.addWidget(self.prj_import_grav, 4, 1, 1, 1) + self.prj_add_flight = QtWidgets.QPushButton(self.project_dock_contents) + icon2 = QtGui.QIcon() + icon2.addPixmap(QtGui.QPixmap(":/icons/airborne"), QtGui.QIcon.Normal, QtGui.QIcon.Off) + self.prj_add_flight.setIcon(icon2) self.prj_add_flight.setObjectName("prj_add_flight") self.project_dock_grid.addWidget(self.prj_add_flight, 2, 0, 1, 1) - self.prj_add_meter = QtWidgets.QPushButton(self.project_dock_contents) - icon2 = QtGui.QIcon() - icon2.addPixmap(QtGui.QPixmap(":/icons/meter_config.png"), QtGui.QIcon.Normal, QtGui.QIcon.Off) - self.prj_add_meter.setIcon(icon2) - self.prj_add_meter.setObjectName("prj_add_meter") - self.project_dock_grid.addWidget(self.prj_add_meter, 2, 1, 1, 1) self.prj_import_gps = QtWidgets.QPushButton(self.project_dock_contents) icon3 = QtGui.QIcon() icon3.addPixmap(QtGui.QPixmap(":/icons/gps"), QtGui.QIcon.Normal, QtGui.QIcon.Off) self.prj_import_gps.setIcon(icon3) self.prj_import_gps.setObjectName("prj_import_gps") self.project_dock_grid.addWidget(self.prj_import_gps, 4, 0, 1, 1) - self.prj_import_grav = QtWidgets.QPushButton(self.project_dock_contents) + self.prj_add_meter = QtWidgets.QPushButton(self.project_dock_contents) icon4 = QtGui.QIcon() - icon4.addPixmap(QtGui.QPixmap(":/icons/gravity"), QtGui.QIcon.Normal, QtGui.QIcon.Off) - self.prj_import_grav.setIcon(icon4) - self.prj_import_grav.setIconSize(QtCore.QSize(16, 16)) - self.prj_import_grav.setObjectName("prj_import_grav") - self.project_dock_grid.addWidget(self.prj_import_grav, 4, 1, 1, 1) - self.contextual_tree = QtWidgets.QTreeView(self.project_dock_contents) - self.contextual_tree.setDragEnabled(False) - self.contextual_tree.setDragDropOverwriteMode(False) - self.contextual_tree.setDragDropMode(QtWidgets.QAbstractItemView.InternalMove) - self.contextual_tree.setDefaultDropAction(QtCore.Qt.MoveAction) - self.contextual_tree.setUniformRowHeights(True) - self.contextual_tree.setObjectName("contextual_tree") - self.contextual_tree.header().setVisible(False) - self.project_dock_grid.addWidget(self.contextual_tree, 1, 0, 1, 2) + icon4.addPixmap(QtGui.QPixmap(":/icons/meter_config.png"), QtGui.QIcon.Normal, QtGui.QIcon.Off) + self.prj_add_meter.setIcon(icon4) + self.prj_add_meter.setObjectName("prj_add_meter") + self.project_dock_grid.addWidget(self.prj_add_meter, 2, 1, 1, 1) + self.project_tree = ProjectTreeView(self.project_dock_contents) + self.project_tree.setObjectName("project_tree") + self.project_dock_grid.addWidget(self.project_tree, 1, 0, 1, 2) self.verticalLayout_4.addLayout(self.project_dock_grid) self.project_dock.setWidget(self.project_dock_contents) MainWindow.addDockWidget(QtCore.Qt.DockWidgetArea(1), self.project_dock) @@ -119,9 +113,10 @@ def setupUi(self, MainWindow): sizePolicy.setVerticalStretch(0) sizePolicy.setHeightForWidth(self.info_dock.sizePolicy().hasHeightForWidth()) self.info_dock.setSizePolicy(sizePolicy) - self.info_dock.setMinimumSize(QtCore.QSize(644, 246)) + self.info_dock.setMinimumSize(QtCore.QSize(242, 246)) self.info_dock.setMaximumSize(QtCore.QSize(524287, 246)) self.info_dock.setSizeIncrement(QtCore.QSize(0, 0)) + self.info_dock.setFloating(False) self.info_dock.setFeatures(QtWidgets.QDockWidget.AllDockWidgetFeatures) self.info_dock.setAllowedAreas(QtCore.Qt.BottomDockWidgetArea|QtCore.Qt.TopDockWidgetArea) self.info_dock.setObjectName("info_dock") @@ -133,7 +128,7 @@ def setupUi(self, MainWindow): self.console_dock_contents.setSizePolicy(sizePolicy) self.console_dock_contents.setObjectName("console_dock_contents") self.gridLayout = QtWidgets.QGridLayout(self.console_dock_contents) - self.gridLayout.setContentsMargins(5, 0, 0, 0) + self.gridLayout.setContentsMargins(5, 0, 5, 0) self.gridLayout.setSpacing(0) self.gridLayout.setObjectName("gridLayout") self.console_frame = QtWidgets.QFrame(self.console_dock_contents) @@ -156,7 +151,7 @@ def setupUi(self, MainWindow): sizePolicy.setVerticalStretch(0) sizePolicy.setHeightForWidth(self.text_console.sizePolicy().hasHeightForWidth()) self.text_console.setSizePolicy(sizePolicy) - self.text_console.setMinimumSize(QtCore.QSize(0, 100)) + self.text_console.setMinimumSize(QtCore.QSize(0, 0)) self.text_console.setMaximumSize(QtCore.QSize(16777215, 16777215)) palette = QtGui.QPalette() brush = QtGui.QBrush(QtGui.QColor(160, 160, 160)) @@ -192,20 +187,7 @@ def setupUi(self, MainWindow): self.label_logging_level.setObjectName("label_logging_level") self.console_btns_layout.addWidget(self.label_logging_level, 0, 1, 1, 1) self.verticalLayout_2.addLayout(self.console_btns_layout) - self.gridLayout.addWidget(self.console_frame, 0, 1, 1, 1) - self.text_info = QtWidgets.QPlainTextEdit(self.console_dock_contents) - self.text_info.setEnabled(True) - sizePolicy = QtWidgets.QSizePolicy(QtWidgets.QSizePolicy.Minimum, QtWidgets.QSizePolicy.Expanding) - sizePolicy.setHorizontalStretch(1) - sizePolicy.setVerticalStretch(0) - sizePolicy.setHeightForWidth(self.text_info.sizePolicy().hasHeightForWidth()) - self.text_info.setSizePolicy(sizePolicy) - self.text_info.setMinimumSize(QtCore.QSize(0, 100)) - self.text_info.setSizeIncrement(QtCore.QSize(1, 0)) - self.text_info.setReadOnly(True) - self.text_info.setPlainText("") - self.text_info.setObjectName("text_info") - self.gridLayout.addWidget(self.text_info, 0, 0, 1, 1) + self.gridLayout.addWidget(self.console_frame, 0, 0, 1, 1) self.info_dock.setWidget(self.console_dock_contents) MainWindow.addDockWidget(QtCore.Qt.DockWidgetArea(8), self.info_dock) self.actionDocumentation = QtWidgets.QAction(MainWindow) @@ -236,10 +218,10 @@ def setupUi(self, MainWindow): self.action_file_save.setIcon(icon7) self.action_file_save.setObjectName("action_file_save") self.action_add_flight = QtWidgets.QAction(MainWindow) - self.action_add_flight.setIcon(icon1) + self.action_add_flight.setIcon(icon2) self.action_add_flight.setObjectName("action_add_flight") self.action_add_meter = QtWidgets.QAction(MainWindow) - self.action_add_meter.setIcon(icon2) + self.action_add_meter.setIcon(icon4) self.action_add_meter.setObjectName("action_add_meter") self.action_project_info = QtWidgets.QAction(MainWindow) icon8 = QtGui.QIcon() @@ -254,7 +236,7 @@ def setupUi(self, MainWindow): self.action_import_gps.setIcon(icon3) self.action_import_gps.setObjectName("action_import_gps") self.action_import_grav = QtWidgets.QAction(MainWindow) - self.action_import_grav.setIcon(icon4) + self.action_import_grav.setIcon(icon1) self.action_import_grav.setObjectName("action_import_grav") self.menuFile.addAction(self.action_file_new) self.menuFile.addAction(self.action_file_open) @@ -289,6 +271,7 @@ def setupUi(self, MainWindow): self.project_dock.visibilityChanged['bool'].connect(self.action_project_dock.setChecked) self.action_info_dock.toggled['bool'].connect(self.info_dock.setVisible) self.info_dock.visibilityChanged['bool'].connect(self.action_info_dock.setChecked) + self.btn_clear_console.clicked.connect(self.text_console.clear) QtCore.QMetaObject.connectSlotsByName(MainWindow) def retranslateUi(self, MainWindow): @@ -300,12 +283,12 @@ def retranslateUi(self, MainWindow): self.menuProject.setTitle(_translate("MainWindow", "Project")) self.project_dock.setWindowTitle(_translate("MainWindow", "Project")) self.label_prj_info.setText(_translate("MainWindow", "Project Tree:")) + self.prj_import_grav.setText(_translate("MainWindow", "Import Gravity")) self.prj_add_flight.setText(_translate("MainWindow", "Add Flight")) - self.prj_add_meter.setText(_translate("MainWindow", "Add Meter")) self.prj_import_gps.setText(_translate("MainWindow", "Import GPS")) - self.prj_import_grav.setText(_translate("MainWindow", "Import Gravity")) + self.prj_add_meter.setText(_translate("MainWindow", "Add Meter")) self.toolbar.setWindowTitle(_translate("MainWindow", "Toolbar")) - self.info_dock.setWindowTitle(_translate("MainWindow", "Info/Console")) + self.info_dock.setWindowTitle(_translate("MainWindow", "Console")) self.combo_console_verbosity.setItemText(0, _translate("MainWindow", "Debug")) self.combo_console_verbosity.setItemText(1, _translate("MainWindow", "Info")) self.combo_console_verbosity.setItemText(2, _translate("MainWindow", "Warning")) @@ -313,7 +296,6 @@ def retranslateUi(self, MainWindow): self.combo_console_verbosity.setItemText(4, _translate("MainWindow", "Critical")) self.btn_clear_console.setText(_translate("MainWindow", "Clear")) self.label_logging_level.setText(_translate("MainWindow", "

Logging Level:

")) - self.text_info.setPlaceholderText(_translate("MainWindow", "Selection Info")) self.actionDocumentation.setText(_translate("MainWindow", "Documentation")) self.actionDocumentation.setShortcut(_translate("MainWindow", "F1")) self.action_exit.setText(_translate("MainWindow", "Exit")) @@ -339,5 +321,6 @@ def retranslateUi(self, MainWindow): self.action_import_gps.setText(_translate("MainWindow", "Import GPS")) self.action_import_grav.setText(_translate("MainWindow", "Import Gravity")) -from dgp.gui.widgets import TabWorkspace +from dgp.gui.views import ProjectTreeView +from dgp.gui.widgets import FlightWorkspace from dgp import resources_rc diff --git a/dgp/gui/ui/main_window.ui b/dgp/gui/ui/main_window.ui index 98c84b3..64c199b 100644 --- a/dgp/gui/ui/main_window.ui +++ b/dgp/gui/ui/main_window.ui @@ -41,7 +41,7 @@ 0 - + @@ -113,8 +113,8 @@ - 359 - 262 + 0 + 0 @@ -167,25 +167,31 @@ - - + + - Add Flight + Import Gravity - :/icons/airborne:/icons/airborne + :/icons/gravity:/icons/gravity + + + + 16 + 16 + - - + + - Add Meter + Add Flight - :/icons/meter_config.png:/icons/meter_config.png + :/icons/airborne:/icons/airborne @@ -200,44 +206,19 @@ - - + + - Import Gravity + Add Meter - :/icons/gravity:/icons/gravity - - - - 16 - 16 - + :/icons/meter_config.png:/icons/meter_config.png - - - false - - - false - - - QAbstractItemView::InternalMove - - - Qt::MoveAction - - - true - - - false - - + @@ -276,7 +257,7 @@ - 644 + 242 246 @@ -292,6 +273,9 @@ 0 + + false + QDockWidget::AllDockWidgetFeatures @@ -299,7 +283,7 @@ Qt::BottomDockWidgetArea|Qt::TopDockWidgetArea - Info/Console + Console 8 @@ -319,7 +303,7 @@ 0 - 0 + 5 0 @@ -327,7 +311,7 @@ 0 - + @@ -374,7 +358,7 @@ 0 - 100 + 0 @@ -487,40 +471,6 @@ - - - - true - - - - 1 - 0 - - - - - 0 - 100 - - - - - 1 - 0 - - - - true - - - - - - Selection Info - - - @@ -675,11 +625,16 @@ - TabWorkspace + FlightWorkspace QTabWidget
dgp.gui.widgets
1 + + ProjectTreeView + QTreeView +
dgp.gui.views
+ prj_add_flight @@ -752,5 +707,21 @@ + + btn_clear_console + clicked() + text_console + clear() + + + 62 + 1101 + + + 750 + 987 + + + diff --git a/dgp/gui/views.py b/dgp/gui/views.py new file mode 100644 index 0000000..fca96c9 --- /dev/null +++ b/dgp/gui/views.py @@ -0,0 +1,105 @@ +# coding: utf-8 + +import logging +import functools + +import PyQt5.QtCore as QtCore +import PyQt5.QtGui as QtGui +import PyQt5.QtWidgets as QtWidgets +from PyQt5.QtCore import pyqtSignal +from PyQt5.QtWidgets import QAction, QMenu, QTreeView + +from dgp.lib import types +from dgp.gui.models import ProjectModel +from dgp.gui.dialogs import PropertiesDialog + + +class ProjectTreeView(QTreeView): + item_removed = pyqtSignal(types.BaseTreeItem) + + def __init__(self, parent=None): + super().__init__(parent=parent) + + self._project = None + self.log = logging.getLogger(__name__) + + self.setMinimumSize(QtCore.QSize(0, 300)) + self.setAlternatingRowColors(False) + self.setAutoExpandDelay(1) + self.setExpandsOnDoubleClick(False) + self.setRootIsDecorated(False) + self.setUniformRowHeights(True) + self.setHeaderHidden(True) + self.setObjectName('project_tree') + self.setContextMenuPolicy(QtCore.Qt.DefaultContextMenu) + # self._init_model() + + def set_project(self, project): + self._project = project + self._init_model() + + def _init_model(self): + """Initialize a new-style ProjectModel from models.py""" + model = ProjectModel(self._project, parent=self) + self.setModel(model) + self.expandAll() + + def toggle_expand(self, index): + self.setExpanded(index, (not self.isExpanded(index))) + + def contextMenuEvent(self, event: QtGui.QContextMenuEvent, *args, **kwargs): + # get the index of the item under the click event + context_ind = self.indexAt(event.pos()) + context_focus = self.model().itemFromIndex(context_ind) + + info_slot = functools.partial(self._info_action, context_focus) + plot_slot = functools.partial(self._plot_action, context_focus) + menu = QMenu() + info_action = QAction("Properties") + info_action.triggered.connect(info_slot) + plot_action = QAction("Plot in new window") + plot_action.triggered.connect(plot_slot) + if isinstance(context_focus, types.DataSource): + data_action = QAction("Set Active Data File") + # TODO: Work on this later, it breaks plotter currently + # data_action.triggered.connect( + # lambda item: context_focus.__setattr__('active', True) + # ) + menu.addAction(data_action) + data_delete = QAction("Delete Data File") + data_delete.triggered.connect( + lambda: self._remove_data_action(context_focus)) + menu.addAction(data_delete) + + menu.addAction(info_action) + menu.addAction(plot_action) + menu.exec_(event.globalPos()) + event.accept() + + def _plot_action(self, item): + return + + def _info_action(self, item): + dlg = PropertiesDialog(item, parent=self) + dlg.exec_() + + def _remove_data_action(self, item: types.BaseTreeItem): + if not isinstance(item, types.DataSource): + return + raise NotImplementedError("Remove data not yet implemented.") + # Confirmation Dialog + confirm = QtWidgets.QMessageBox(parent=self.parent()) + confirm.setStandardButtons(QtWidgets.QMessageBox.Ok) + confirm.setText("Are you sure you wish to delete: {}".format(item.filename)) + confirm.setIcon(QtWidgets.QMessageBox.Question) + confirm.setWindowTitle("Confirm Delete") + res = confirm.exec_() + if res: + print("Emitting item_removed signal") + self.item_removed.emit(item) + print("removing item from its flight") + try: + item.flight.remove_data(item) + except: + print("Exception occured removing item from flight") + diff --git a/dgp/gui/widgets.py b/dgp/gui/widgets.py index 5ffde5b..ecc98d5 100644 --- a/dgp/gui/widgets.py +++ b/dgp/gui/widgets.py @@ -7,17 +7,21 @@ from PyQt5.QtGui import (QDropEvent, QDragEnterEvent, QDragMoveEvent, QContextMenuEvent) from PyQt5.QtCore import Qt, pyqtSignal, pyqtBoundSignal -from PyQt5.QtWidgets import (QWidget, QVBoxLayout, QGridLayout, QTabWidget, - QTreeView, QSizePolicy) +from PyQt5.QtWidgets import (QWidget, QVBoxLayout, QHBoxLayout, QGridLayout, + QTabWidget, QTreeView, QSizePolicy) import PyQt5.QtWidgets as QtWidgets import PyQt5.QtGui as QtGui +import pyqtgraph as pg +from pyqtgraph.flowchart import Flowchart - -from .plotter import LineGrabPlot, LineUpdate -from dgp.lib.project import Flight import dgp.gui.models as models import dgp.lib.types as types +from dgp.lib.enums import DataTypes +from .plotter import LineGrabPlot, LineUpdate +from dgp.lib.project import Flight from dgp.lib.etc import gen_uuid +from dgp.gui.dialogs import ChannelSelectionDialog +from dgp.lib.transform import * # Experimenting with drag-n-drop and custom widgets @@ -37,13 +41,20 @@ def dropEvent(self, e: QDropEvent): class WorkspaceWidget(QWidget): """Base Workspace Tab Widget - Subclass to specialize function""" - def __init__(self, label: str, parent=None, **kwargs): + def __init__(self, label: str, flight: Flight, parent=None, **kwargs): super().__init__(parent, **kwargs) self.label = label + self._flight = flight self._uid = gen_uuid('ww') - self._context_model = None self._plot = None + def widget(self): + return None + + @property + def flight(self) -> Flight: + return self._flight + @property def plot(self) -> LineGrabPlot: return self._plot @@ -52,18 +63,9 @@ def plot(self) -> LineGrabPlot: def plot(self, value): self._plot = value - def data_modified(self, action: str, uid: str): + def data_modified(self, action: str, dsrc: types.DataSource): pass - @property - def model(self): - return self._context_model - - @model.setter - def model(self, value): - assert isinstance(value, models.BaseTreeModel) - self._context_model = value - @property def uid(self): return self._uid @@ -72,46 +74,80 @@ def uid(self): class PlotTab(WorkspaceWidget): """Sub-tab displayed within Flight tab interface. Displays canvas for plotting data series.""" - def __init__(self, flight: Flight, label: str, axes: int, **kwargs): - super().__init__(label, **kwargs) + defaults = {'gravity': 0, 'long': 1, 'cross': 1} + + def __init__(self, label: str, flight: Flight, axes: int, + plot_default=True, **kwargs): + super().__init__(label, flight, **kwargs) self.log = logging.getLogger('PlotTab') + self.model = None + self._ctrl_widget = None + self._axes_count = axes + self._setup_ui() + self._init_model(plot_default) + def _setup_ui(self): vlayout = QVBoxLayout() - self.plot = LineGrabPlot(flight, axes) - for line in flight.lines: + top_button_hlayout = QHBoxLayout() + self._select_channels = QtWidgets.QPushButton("Select Channels") + self._select_channels.clicked.connect(self._show_select_dialog) + top_button_hlayout.addWidget(self._select_channels, + alignment=Qt.AlignLeft) + + self._enter_line_selection = QtWidgets.QPushButton("Enter Line " + "Selection Mode") + top_button_hlayout.addWidget(self._enter_line_selection, + alignment=Qt.AlignRight) + vlayout.addLayout(top_button_hlayout) + + self.plot = LineGrabPlot(self.flight, self._axes_count) + for line in self.flight.lines: self.plot.add_patch(line.start, line.stop, line.uid, line.label) self.plot.line_changed.connect(self._on_modified_line) - self._flight = flight vlayout.addWidget(self.plot) vlayout.addWidget(self.plot.get_toolbar(), alignment=Qt.AlignBottom) self.setLayout(vlayout) - self._init_model() - def _init_model(self): - channels = self._flight.channels + def _init_model(self, default_state=False): + channels = self.flight.channels plot_model = models.ChannelListModel(channels, len(self.plot)) plot_model.plotOverflow.connect(self._too_many_children) plot_model.channelChanged.connect(self._on_channel_changed) - # plot_model.update() self.model = plot_model - # TODO: Candidate to move into base WorkspaceWidget + if default_state: + self.set_defaults(channels) + + def set_defaults(self, channels): + for name, plot in self.defaults.items(): + for channel in channels: + if channel.field == name.lower(): + self.model.move_channel(channel.uid, plot) + + def _show_select_dialog(self): + dlg = ChannelSelectionDialog(parent=self) + if self.model is not None: + dlg.set_model(self.model) + dlg.show() + def data_modified(self, action: str, dsrc: types.DataSource): if action.lower() == 'add': self.log.info("Adding channels to model.") - self.model.add_channels(*dsrc.get_channels()) + n_channels = dsrc.get_channels() + self.model.add_channels(*n_channels) + self.set_defaults(n_channels) elif action.lower() == 'remove': self.log.info("Removing channels from model.") - self.model.remove_source(dsrc) + # Re-initialize model - source must be removed from flight first + self._init_model() else: - print("Unexpected action received") + return def _on_modified_line(self, info: LineUpdate): - flight = self._flight - if info.uid in [x.uid for x in flight.lines]: + if info.uid in [x.uid for x in self.flight.lines]: if info.action == 'modify': - line = flight.get_line(info.uid) + line = self.flight.get_line(info.uid) line.start = info.start line.stop = info.stop line.label = info.label @@ -120,17 +156,17 @@ def _on_modified_line(self, info: LineUpdate): .format(start=info.start, stop=info.stop, label=info.label)) elif info.action == 'remove': - flight.remove_line(info.uid) + self.flight.remove_line(info.uid) self.log.debug("Removed line: start={start}, " "stop={stop}, label={label}" .format(start=info.start, stop=info.stop, label=info.label)) else: line = types.FlightLine(info.start, info.stop, uid=info.uid) - flight.add_line(line) + self.flight.add_line(line) self.log.debug("Added line to flight {flt}: start={start}, " "stop={stop}, label={label}" - .format(flt=flight.name, start=info.start, + .format(flt=self.flight.name, start=info.start, stop=info.stop, label=info.label)) def _on_channel_changed(self, new: int, channel: types.DataChannel): @@ -147,64 +183,74 @@ def _too_many_children(self, uid): class TransformTab(WorkspaceWidget): - def __init__(self, flight, label, *args, **kwargs): - super().__init__(label) - self._flight = flight - self._elements = {} - - self._setupUi() - self._init_model() - - def _setupUi(self) -> None: - """ - Initialize the UI Components of the Transform Tab. - Major components (plot, transform view, info panel) are added to the - instance _elements dict. - - """ - grid = QGridLayout() - transform = QTreeView() - transform.setSizePolicy(QSizePolicy.Minimum, - QSizePolicy.Expanding) - info = QtWidgets.QTextEdit() - info.setSizePolicy(QSizePolicy.Minimum, QSizePolicy.Minimum) - - plot = LineGrabPlot(self._flight, 2) - plot.setSizePolicy(QSizePolicy.Expanding, QSizePolicy.Expanding) - plot_toolbar = plot.get_toolbar() - - # Testing layout - btn = QtWidgets.QPushButton("Add") - btn.setSizePolicy(QSizePolicy.Maximum, QSizePolicy.Maximum) - btn.pressed.connect(lambda: info.show()) - - btn2 = QtWidgets.QPushButton("Remove") - btn2.setSizePolicy(QSizePolicy.Maximum, QSizePolicy.Maximum) - btn2.pressed.connect(lambda: info.hide()) - - grid.addWidget(transform, 0, 0) - grid.addWidget(btn, 2, 0) - grid.addWidget(btn2, 3, 0) - grid.addWidget(info, 1, 0) - grid.addWidget(plot, 0, 1, 3, 1) - grid.addWidget(plot_toolbar, 3, 1) - - self.setLayout(grid) - - elements = {'transform': transform, - 'plot': plot, - 'toolbar': plot_toolbar, - 'info': info} - self._elements.update(elements) - - def _init_model(self): - channels = self._flight.channels - plot_model = models.ChannelListModel(channels, len(self._elements[ - 'plot'])) - # plot_model.plotOverflow.connect(self._too_many_children) - # plot_model.channelChanged.connect(self._on_channel_changed) - plot_model.update() - self.model = plot_model + def __init__(self, label: str, flight: Flight): + super().__init__(label, flight) + self._layout = QGridLayout() + self.setLayout(self._layout) + + self.fc = None + self.plots = [] + self._init_flowchart() + self.populate_flowchart() + + def _init_flowchart(self): + fc_terminals = {"Gravity": dict(io='in'), + "Trajectory": dict(io='in'), + "Output": dict(io='out')} + fc = Flowchart(library=LIBRARY, terminals=fc_terminals) + fc_ctrl_widget = fc.widget() + chart_window = fc_ctrl_widget.cwWin + # Force the Flowchart pop-out window to close when the main app exits + chart_window.setAttribute(Qt.WA_QuitOnClose, False) + + fc_ctrl_widget.ui.reloadBtn.setEnabled(False) + self._layout.addWidget(fc_ctrl_widget, 0, 0, 2, 1) + + plot_1 = pg.PlotWidget() + self._layout.addWidget(plot_1, 0, 1) + plot_2 = pg.PlotWidget() + self._layout.addWidget(plot_2, 1, 1) + plot_list = {'Top Plot': plot_1, 'Bottom Plot': plot_2} + + plotnode_1 = fc.createNode('PlotWidget', pos=(0, -150)) + plotnode_1.setPlotList(plot_list) + plotnode_1.setPlot(plot_1) + plotnode_2 = fc.createNode('PlotWidget', pos=(150, -150)) + plotnode_2.setPlotList(plot_list) + plotnode_2.setPlot(plot_2) + + self.plots.append(plotnode_1) + self.plots.append(plotnode_2) + self.fc = fc + + def populate_flowchart(self): + """Populate the flowchart/Transform interface with a default + 'example'/base network of Nodes dependent on available data.""" + if self.fc is None: + return + else: + fc = self.fc + grav = self.flight.get_source(DataTypes.GRAVITY) + gps = self.flight.get_source(DataTypes.TRAJECTORY) + if grav is not None: + fc.setInput(Gravity=grav.load()) + demux = LIBRARY.getNodeType('LineDemux')('Demux', self.flight) + fc.addNode(demux, 'Demux') + + if gps is not None: + fc.setInput(Trajectory=gps.load()) + eotvos = fc.createNode('Eotvos', pos=(0, 0)) + fc.connectTerminals(fc['Trajectory'], eotvos['data_in']) + fc.connectTerminals(eotvos['data_out'], self.plots[0]['In']) + + def data_modified(self, action: str, dsrc: types.DataSource): + """Slot: Called when a DataSource has been added/removed from the + Flight this tab/workspace is associated with.""" + if action.lower() == 'add': + if dsrc.dtype == DataTypes.TRAJECTORY: + self.fc.setInput(Trajectory=dsrc.load()) + elif dsrc.dtype == DataTypes.GRAVITY: + self.fc.setInput(Gravity=dsrc.load()) class MapTab(WorkspaceWidget): @@ -212,6 +258,7 @@ class MapTab(WorkspaceWidget): class FlightTab(QWidget): + """Top Level Tab created for each Flight object open in the workspace""" contextChanged = pyqtSignal(models.BaseTreeModel) # type: pyqtBoundSignal @@ -221,41 +268,41 @@ def __init__(self, flight: Flight, parent=None, flags=0, **kwargs): self._flight = flight self._layout = QVBoxLayout(self) + # _workspace is the inner QTabWidget containing the WorkspaceWidgets self._workspace = QTabWidget() self._workspace.setTabPosition(QTabWidget.West) self._workspace.currentChanged.connect(self._on_changed_context) self._layout.addWidget(self._workspace) # Define Sub-Tabs within Flight space e.g. Plot, Transform, Maps - self._plot_tab = PlotTab(flight, "Plot", 3) - - # self._transform_tab = WorkspaceWidget("Transforms") - self._transform_tab = TransformTab(flight, "Transforms") - self._map_tab = WorkspaceWidget("Map") - + self._plot_tab = PlotTab(label="Plot", flight=flight, axes=3) self._workspace.addTab(self._plot_tab, "Plot") + + self._transform_tab = TransformTab("Transforms", flight) self._workspace.addTab(self._transform_tab, "Transforms") - self._workspace.addTab(self._map_tab, "Map") + + # self._map_tab = WorkspaceWidget("Map") + # self._workspace.addTab(self._map_tab, "Map") self._context_models = {} self._workspace.setCurrentIndex(0) self._plot_tab.update() - def _init_transform_tab(self): - pass - - def _init_map_tab(self): - pass + def subtab_widget(self): + return self._workspace.currentWidget().widget() def _on_changed_context(self, index: int): self.log.debug("Flight {} sub-tab changed to index: {}".format( self.flight.name, index)) - model = self._workspace.currentWidget().model - self.contextChanged.emit(model) + try: + model = self._workspace.currentWidget().model + self.contextChanged.emit(model) + except AttributeError: + pass def new_data(self, dsrc: types.DataSource): - for tab in [self._plot_tab, self._transform_tab, self._map_tab]: + for tab in [self._plot_tab, self._transform_tab]: tab.data_modified('add', dsrc) def data_deleted(self, dsrc): @@ -281,7 +328,7 @@ def context_model(self): return current_tab.model -class CustomTabBar(QtWidgets.QTabBar): +class _FlightTabBar(QtWidgets.QTabBar): """Custom Tab Bar to allow us to implement a custom Context Menu to handle right-click events.""" def __init__(self, parent=None): @@ -313,9 +360,10 @@ def contextMenuEvent(self, event: QContextMenuEvent, *args, **kwargs): event.accept() -class TabWorkspace(QtWidgets.QTabWidget): +class FlightWorkspace(QtWidgets.QTabWidget): + """Custom QTabWidget promoted in main_window.ui supporting a custom + TabBar which enables the attachment of custom event actions e.g. right + click context-menus for the tab bar buttons.""" def __init__(self, parent=None): super().__init__(parent=parent) - - bar = CustomTabBar() - self.setTabBar(bar) + self.setTabBar(_FlightTabBar()) diff --git a/dgp/lib/project.py b/dgp/lib/project.py index 959d5d8..f3211f7 100644 --- a/dgp/lib/project.py +++ b/dgp/lib/project.py @@ -12,6 +12,7 @@ from .meterconfig import MeterConfig, AT1Meter from .etc import gen_uuid from .types import DataSource, FlightLine, TreeItem +from .enums import DataTypes from . import datamanager as dm """ Dynamic Gravity Processor (DGP) :: project.py @@ -347,6 +348,12 @@ def channels(self) -> list: rv.extend(source.get_channels()) return rv + def get_source(self, dtype: DataTypes) -> DataSource: + """Get the first DataSource of type 'dtype'""" + for source in self.get_child(self._data_uid): + if source.dtype == dtype: + return source + def register_data(self, datasrc: DataSource): """Register a data file for use by this Flight""" _log.info("Flight {} registering data source: {} UID: {}".format( diff --git a/dgp/lib/transform/__init__.py b/dgp/lib/transform/__init__.py index e69de29..5c7993a 100644 --- a/dgp/lib/transform/__init__.py +++ b/dgp/lib/transform/__init__.py @@ -0,0 +1,15 @@ +# coding: utf-8 + +from pyqtgraph.flowchart.NodeLibrary import NodeLibrary, isNodeClass +from pyqtgraph.flowchart.library import Display, Data + +__all__ = ['derivatives', 'filters', 'gravity', 'operators', 'LIBRARY'] + +from . import operators, gravity, derivatives, filters + +LIBRARY = NodeLibrary() +for mod in [operators, gravity, derivatives, filters, Display, Data]: + nodes = [getattr(mod, name) for name in dir(mod) + if isNodeClass(getattr(mod, name))] + for node in nodes: + LIBRARY.addNodeType(node, [(mod.__name__.split('.')[-1],)]) diff --git a/dgp/lib/transform/display.py b/dgp/lib/transform/display.py new file mode 100644 index 0000000..0061ac3 --- /dev/null +++ b/dgp/lib/transform/display.py @@ -0,0 +1,34 @@ +# coding: utf-8 + +from typing import Dict + +from matplotlib.axes import Axes +from pyqtgraph.flowchart import Node, Terminal + +"""Containing display Nodes to translate between pyqtgraph Flowchart and an +MPL plot""" + + +class MPLPlotNode(Node): + nodeName = 'MPLPlotNode' + + def __init__(self, name, axes=None): + terminals = {'In': dict(io='in', multi=True)} + super().__init__(name=name, terminals=terminals) + self.plot = axes + + def disconnected(self, localTerm, remoteTerm): + """Called when connection is removed""" + if localTerm is self['In']: + pass + + def process(self, In: Dict, display=True) -> None: + if display and self.plot is not None: + for name, val in In.items(): + print("Plotter has:") + print("Name: ", name, "\nValue: ", val) + if val is None: + continue + + + diff --git a/dgp/lib/transform/filters.py b/dgp/lib/transform/filters.py index 6893749..d371e7d 100644 --- a/dgp/lib/transform/filters.py +++ b/dgp/lib/transform/filters.py @@ -1,5 +1,6 @@ # coding: utf-8 +from pyqtgraph.Qt import QtWidgets from pyqtgraph.flowchart.library.common import CtrlNode from scipy import signal @@ -11,7 +12,8 @@ class FIRLowpassFilter(CtrlNode): nodeName = 'FIRLowpassFilter' uiTemplate = [ ('length', 'spin', {'value': 60, 'step': 1, 'bounds': [1, None]}), - ('sample', 'spin', {'value': 0.5, 'step': 0.1, 'bounds': [0.0, None]}) + ('sample', 'spin', {'value': 0.5, 'step': 0.1, 'bounds': [0.0, None]}), + ('channel', 'combo', {'values': []}) ] def __init__(self, name): @@ -23,6 +25,13 @@ def __init__(self, name): CtrlNode.__init__(self, name, terminals=terminals) def process(self, data_in, display=True): + if display: + self.updateList(data_in) + + channel = self.ctrls['channel'].currentText() + if channel is not '': + data_in = data_in[channel] + filter_len = self.ctrls['length'].value() fs = self.ctrls['sample'].value() fc = 1 / filter_len @@ -34,6 +43,24 @@ def process(self, data_in, display=True): padlen=80) return {'data_out': pd.Series(filtered_data, index=data_in.index)} + def updateList(self, data): + # TODO: Work on better update algo + if isinstance(data, pd.DataFrame): + ctrl = self.ctrls['channel'] # type: QtWidgets.QComboBox + + count = ctrl.count() + items = [ctrl.itemText(i) for i in range(count)] + opts = [col for col in data if col not in items] + if opts: + print("updating cbox with: ", opts) + ctrl.addItems(opts) + + # def ctrlWidget(self): + # widget = super().ctrlWidget() + # widget.layout().addWidget(self.selection) + # return widget + + # TODO: Do ndarrays with both dimensions greater than 1 work? class Detrend(CtrlNode): diff --git a/dgp/lib/types.py b/dgp/lib/types.py index 0558449..bb36dcf 100644 --- a/dgp/lib/types.py +++ b/dgp/lib/types.py @@ -35,6 +35,9 @@ DataCurve = namedtuple('DataCurve', ['channel', 'data']) +LineUpdate = namedtuple('LineUpdate', ['flight_id', 'action', 'uid', 'start', + 'stop', 'label']) + class AbstractTreeItem(metaclass=ABCMeta): """ diff --git a/docs/requirements.txt b/docs/requirements.txt new file mode 100644 index 0000000..7002124 --- /dev/null +++ b/docs/requirements.txt @@ -0,0 +1,33 @@ +alabaster==0.7.10 +Babel==2.5.0 +certifi==2017.7.27.1 +chardet==3.0.4 +cycler==0.10.0 +docutils==0.14 +idna==2.6 +imagesize==0.7.1 +Jinja2==2.9.6 +MarkupSafe==1.0 +numexpr==2.6.2 +Pygments==2.2.0 +pyparsing==2.2.0 +python-dateutil==2.6.1 +pytz==2017.2 +requests==2.18.4 +snowballstemmer==1.2.1 +Sphinx==1.6.3 +sphinx-rtd-theme==0.2.4 +sphinxcontrib-websupport==1.0.1 +urllib3==1.22 + +coverage==4.4.1 +matplotlib==2.0.2 +numpy==1.13.1 +pandas==0.20.3 +PyQt5==5.9 +pyqtgraph==0.10.0 +requests==2.18.4 +scipy==0.19.1 +sip==4.19.3 +six==1.10.0 +tables==3.4.2 diff --git a/examples/SimpleProcessing.py b/examples/SimpleProcessing.py new file mode 100644 index 0000000..4bcf3df --- /dev/null +++ b/examples/SimpleProcessing.py @@ -0,0 +1,206 @@ +import numpy as np +import matplotlib.pyplot as plt +from scipy import signal +from scipy.signal import correlate, filtfilt, firwin, freqz +import easygui +from tempfile import TemporaryFile +import os + +from ..dgp.lib.eotvos import calc_eotvos +from ..dgp.lib.timesync import find_time_delay, time_Shift_array +from lib.trajectory_ingestor import import_trajectory +from lib.gravity_ingestor import read_at1a + +os.getcwd() + +MeterGain = 1.0 + +plt.interactive(True) +# was sept7.dat +path = easygui.fileopenbox() +# meter=read_at1a('tests\january10vant2st.dat') +meter = read_at1a(path) +fields = ['mdy', 'hms', 'lat', 'long', 'ortho_ht', 'ell_ht', 'num_sats', 'pdop'] +# was Possept7.txt +path = easygui.fileopenbox() +gpsdata = import_trajectory(path, columns=fields, skiprows=1, timeformat='hms') + + +def find_nearest(array, value): + idx = (np.abs(array - value)).argmin() + return idx + + +# newindex = meter.index.union(gpsdata.index) +# meter= meter.reindex(newindex) +# gpsdata = gpsdata.reindex(newindex) + +if meter.index[0] >= gpsdata.index[0]: + start = meter.index[0] +else: + start = gpsdata.index[0] + +if meter.index[-1] >= gpsdata.index[-1]: + end = gpsdata.index[-1] +else: + end = meter.index[-1] + +meter = meter[start: end] +gpsdata = gpsdata[start: end] +Eotvos = calc_eotvos(gpsdata.lat.values, gpsdata.long.values, + gpsdata.ell_ht.values, 10) + +# filter design for time sync +fs = 10 # sampling frequency +nyq_rate = fs / 2 +numtaps = 2001 +fc = 0.01 # frequecy stop +Nfc = fc / nyq_rate # normaliced cutt of frequency +a = 1.0 +b = signal.firwin(numtaps, Nfc, window='blackman') +fgv = signal.filtfilt(b, a, meter.gravity) +fet = signal.filtfilt(b, a, Eotvos) +timef = find_time_delay(fet, -fgv, 10) +print('time shift filtered', timef) +# + + +# Use this for big lag determination +# corr = correlate(ref, target) +# lag = len(ref) - 1 - np.argmax(corr) + +time = find_time_delay(Eotvos, -meter.gravity, 10) +print('time shift', time) +# time= 0.763 # overwrite here +gravitys = time_Shift_array(meter.gravity, -time, 10) +time = find_time_delay(Eotvos, -gravitys, 10) +print('time shift fixed', time) +Total = MeterGain * gravitys + Eotvos + +# select the lines using eotvos no vertical acce +h = np.zeros(len(gpsdata.ell_ht)) +Eot_simple = calc_eotvos(gpsdata.lat.values, gpsdata.long.values, h, 10) +plt.figure(figsize=(14, 9)) +# plt.figure() +plt.title('Eotvos_simple') +plt.plot(Eot_simple) +plt.show() + +# easygui.msgbox('continue') +nlines = int(easygui.enterbox('Select numbe of lines')) +clicks = 2 * nlines + +x = plt.ginput(clicks, timeout=100) +print("clicked", x) +np.save('lines', x) + +# filter design +fs = 10 # sampling frequency +nyq_rate = fs / 2 +numtaps = 2001 +fc = 0.008 # frequecy stop +Nfc = fc / nyq_rate # normaliced cutt of frequency +a = 1.0 +b = signal.firwin(numtaps, Nfc, window='blackman') + +""" +w, h = freqz(b,worN=8000) +plt.plot((w/np.pi)*nyq_rate, np.absolute(h), linewidth=1) +plt.xlabel('Frequency (Hz)') +plt.ylabel('Gain') +plt.title('Frequency Response') +plt.ylim(-0.1,1.1) +plt.xlim(0,0.1) +plt.grid(True) +""" + +fGrav = signal.filtfilt(b, a, Total) +# fGrav=signal.filtfilt(b,a,fGrav1) +flong = signal.filtfilt(b, a, gpsdata.long) +flat = signal.filtfilt(b, a, gpsdata.lat) + +# cut the data in lines +# llong = {} +# lgrav = {} +plt.interactive(False) +plt.figure() +plt.title('Corrected Gravity stack') + +longmin = 10000 +longmax = -10000 + +for n in range(0, nlines): + a = int(x[2 * n][0]) + b = int(x[2 * n + 1][0]) + plt.plot(flong[a:b], fGrav[a:b], label=n) + minl = min(flong[a:b]) + maxl = max(flong[a:b]) + if minl < longmin: + longmin = minl + if maxl > longmax: + longmax = maxl +plt.legend() +plt.show() + +# calculate repeats +a = int(x[0][0]) +b = int(x[1][0]) + +longrange = flong[a + 1000:b - 1000] +latrange = flat[a + 100:b - 100] + +# longrange=np.linspace(longmin,longmax,len(flong)) + + +# built the lonfitude to generate the test points + +Avg = [] +Inter = [] +foravgg = [] +foravglo = [] + +plt.figure() + +sumg = 0 +for l in range(0, nlines): + a = int(x[2 * l][0]) + b = int(x[2 * l + 1][0]) + lo = flong[a:b] + la = flat[a:b] + g = fGrav[a:b] + Inter = [] + dr = 0.001 + for n in range(0, len(longrange), 10): + indices = np.where( + np.logical_and(lo >= longrange[n] - dr, lo <= longrange[n] + dr)) + point = np.array(indices) + Inter.append(point.item(0)) + + # plt.plot(lo[point.item(0)],g[point.item(0)]) + print('number of intersections', len(Inter)) + plt.plot(lo[Inter], g[Inter]) + foravglo.append(lo[Inter]) + foravgg.append(g[Inter]) +# find average line +avg = np.sum(foravgg, axis=0) +avg = avg / nlines +plt.plot(lo[Inter], avg, 'r--') +plt.show() + +# calculate sigma mean error +meanerror = [] +meanabs = 0 +plt.figure() +plt.title('Error to to the mean') +for l in range(0, nlines): + error = foravgg[l] - avg + meanabs = meanabs + np.mean(np.absolute(error)) + meanerror.append(error) + plt.plot(error) + +meanabserror = meanabs / nlines +print('mean absolute error', meanabserror) + +print(np.std(meanerror, axis=1)) +stdev = np.std(meanerror, axis=1) +print(np.sum(stdev, axis=0) / nlines) diff --git a/examples/plot2_prototype.py b/examples/plot2_prototype.py index d5dae97..4bf9ee7 100644 --- a/examples/plot2_prototype.py +++ b/examples/plot2_prototype.py @@ -3,7 +3,9 @@ import uuid import logging import datetime +import traceback +from PyQt5 import QtCore import PyQt5.QtWidgets as QtWidgets import PyQt5.Qt as Qt import numpy as np @@ -11,12 +13,10 @@ from matplotlib.axes import Axes from matplotlib.patches import Rectangle from matplotlib.dates import date2num -from matplotlib.backends.backend_qt5 import NavigationToolbar2QT as NavToolbar os.chdir('..') import dgp.lib.project as project -import dgp.gui.plotter as plotter -from dgp.gui.mplutils import StackedAxesManager +from dgp.gui.plotter2 import FlightLinePlot class MockDataChannel: @@ -39,18 +39,22 @@ def __init__(self): self.setBaseSize(Qt.QSize(600, 600)) self._flight = project.Flight(None, 'test') - self.plot = plotter.BasePlottingCanvas(parent=self) - self.plot.figure.canvas.mpl_connect('pick_event', lambda x: print( - "Pick event handled")) - self.plot.mgr = StackedAxesManager(self.plot.figure, rows=2) - self._toolbar = NavToolbar(self.plot, parent=self) - self._toolbar.actions()[0] = QtWidgets.QAction("Reset View") - self._toolbar.actions()[0].triggered.connect(lambda x: print( - "Action 0 triggered")) + self._plot = FlightLinePlot(self._flight, parent=self) + self._plot.set_mode(grab=True) + print("Plot: ", self._plot) + # self.plot.figure.canvas.mpl_connect('pick_event', lambda x: print( + # "Pick event handled")) + # self.plot.mgr = StackedAxesManager(self.plot.figure, rows=2) + # self._toolbar = NavToolbar(self.plot, parent=self) + # self._toolbar.actions()[0] = QtWidgets.QAction("Reset View") + # self._toolbar.actions()[0].triggered.connect(lambda x: print( + # "Action 0 triggered")) + + self.tb = self._plot.get_toolbar() plot_layout = QtWidgets.QVBoxLayout() - plot_layout.addWidget(self.plot) - plot_layout.addWidget(self._toolbar) + plot_layout.addWidget(self._plot) + plot_layout.addWidget(self.tb) c_widget = QtWidgets.QWidget() c_widget.setLayout(plot_layout) @@ -101,13 +105,26 @@ def update_rect(ax: Axes): ins_1 = self.plot.mgr.add_inset_axes(1) +def excepthook(type_, value, traceback_): + """This allows IDE to properly display unhandled exceptions which are + otherwise silently ignored as the application is terminated. + Override default excepthook with + >>> sys.excepthook = excepthook + + See: http://pyqt.sourceforge.net/Docs/PyQt5/incompatibilities.html + """ + traceback.print_exception(type_, value, traceback_) + QtCore.qFatal('') + + if __name__ == '__main__': + sys.excepthook = excepthook app = QtWidgets.QApplication(sys.argv) _log = logging.getLogger() _log.addHandler(logging.StreamHandler(sys.stdout)) _log.setLevel(logging.DEBUG) window = PlotExample() - window.plot_sin() + # window.plot_sin() sys.exit(app.exec_()) diff --git a/requirements.txt b/requirements.txt index c4cd7fb..af7f5f1 100644 --- a/requirements.txt +++ b/requirements.txt @@ -1,31 +1,13 @@ -alabaster==0.7.10 -Babel==2.5.0 -certifi==2017.7.27.1 -chardet==3.0.4 coverage==4.4.1 -cycler==0.10.0 -docutils==0.14 -idna==2.6 -imagesize==0.7.1 -Jinja2==2.9.6 -MarkupSafe==1.0 matplotlib==2.0.2 -numexpr==2.6.2 numpy==1.13.1 pandas==0.20.3 -Pygments==2.2.0 -pyparsing==2.2.0 PyQt5==5.9 -python-dateutil==2.6.1 -pytz==2017.2 requests==2.18.4 scipy==0.19.1 sip==4.19.3 six==1.10.0 -snowballstemmer==1.2.1 -Sphinx==1.6.3 -sphinx-rtd-theme==0.2.4 -sphinxcontrib-websupport==1.0.1 tables==3.4.2 -urllib3==1.22 -pyqtgraph==0.10.0 \ No newline at end of file +pyqtgraph==0.10.0 + +pytest>=3.3.2 diff --git a/tests/context.py b/tests/context.py index acab0e8..8af9328 100644 --- a/tests/context.py +++ b/tests/context.py @@ -2,12 +2,28 @@ import os import sys +import traceback +import pytest +from PyQt5 import QtCore from PyQt5.Qt import QApplication sys.path.insert(0, os.path.abspath(os.path.join(os.path.dirname(__file__), '..'))) # Import dgp making the project available to test suite by relative import of this file # e.g. from .context import dgp - import dgp + +def excepthook(type_, value, traceback_): + """This allows IDE to properly display unhandled exceptions which are + otherwise silently ignored as the application is terminated. + Override default excepthook with + >>> sys.excepthook = excepthook + + See: http://pyqt.sourceforge.net/Docs/PyQt5/incompatibilities.html + """ + traceback.print_exception(type_, value, traceback_) + QtCore.qFatal('') + + +sys.excepthook = excepthook APP = QApplication([]) diff --git a/tests/test_plotters.py b/tests/test_plotters.py index eaa4cc8..edae73f 100644 --- a/tests/test_plotters.py +++ b/tests/test_plotters.py @@ -1,5 +1,6 @@ # coding: utf-8 +import pytest import unittest from pathlib import Path from datetime import datetime @@ -53,8 +54,9 @@ def test_magic_methods(self): # Test count of Axes self.assertEqual(2, len(self.mgr)) + # TODO: __contains__ in mgr changed to check Axes grav_uid = self.mgr.add_series(self.grav_ch.series(), row=0) - self.assertIn(grav_uid, self.mgr) + # self.assertIn(grav_uid, self.mgr) # Be aware that the __getitem__ returns a tuple of (Axes, Axes) self.assertEqual(self.mgr.get_axes(0, twin=False), self.mgr[0][0]) From 93dc1975913982f1497c160977532b96654859f7 Mon Sep 17 00:00:00 2001 From: bradyzp Date: Sun, 28 Jan 2018 12:19:21 -0700 Subject: [PATCH 059/236] ENH: Added functionality to Pyqtgraph for transform node Implemented basic DateFormatter for Pyqtgraph tick lines. Added TransformPlot class to handle creation of PyQtgraph Plot Widgets for transform interface - sets plots with DateAxis and links the x-axis scales. Change Node Library initialization - add module parameter that determines whether to present Nodes for use by the user, or to hide them as is the case for the Display/Plot nodes - which require special instantiation. Updated FIRLowpassFilter to include the Series name in its output (for use with plot legend) ENH: Further refinements to Pyqtgraph date formatter. Improvements to Pyqtgraph formatter for transform plot interface. Working on common Plot API for MPL/PG plots. Improvements to Plotting backend, refactoring of GUI Tab Code. Refactored dgp/gui/widgets.py and extracted individual Sub-Tab class definitions into their own class file. This should ease the future addition of different tabs, each as their own self contained classes that can then be assembled within a workspace. ENH: Added second flight-line selection plot using pyqtgraph. Added improved Flight Line selection plot based on PyQtGraph library, for better interactive performance. Added line-selection toggle mode - user can click on/off to enter/exit line selection/editing mode. --- dgp/gui/main.py | 4 +- dgp/gui/models.py | 2 - dgp/gui/plotter2.py | 263 ----------- dgp/gui/plotting/__init__.py | 0 dgp/gui/plotting/backends.py | 462 +++++++++++++++++++ dgp/gui/plotting/flightregion.py | 37 ++ dgp/gui/{ => plotting}/mplutils.py | 10 +- dgp/gui/{plotter.py => plotting/plotters.py} | 321 +++++++++++-- dgp/gui/ui/main_window.py | 6 +- dgp/gui/ui/main_window.ui | 10 +- dgp/gui/widgets.py | 369 --------------- dgp/gui/workspace.py | 131 ++++++ dgp/gui/workspaces/BaseTab.py | 48 ++ dgp/gui/workspaces/LineTab.py | 20 + dgp/gui/workspaces/MapTab.py | 7 + dgp/gui/workspaces/PlotTab.py | 142 ++++++ dgp/gui/workspaces/TransformTab.py | 124 +++++ dgp/gui/workspaces/__init__.py | 23 + dgp/lib/transform/__init__.py | 26 +- dgp/lib/transform/display.py | 86 +++- dgp/lib/transform/filters.py | 3 +- examples/plot2_prototype.py | 2 +- examples/plot_example.py | 2 +- tests/test_plotters.py | 10 +- 24 files changed, 1412 insertions(+), 696 deletions(-) delete mode 100644 dgp/gui/plotter2.py create mode 100644 dgp/gui/plotting/__init__.py create mode 100644 dgp/gui/plotting/backends.py create mode 100644 dgp/gui/plotting/flightregion.py rename dgp/gui/{ => plotting}/mplutils.py (98%) rename dgp/gui/{plotter.py => plotting/plotters.py} (80%) delete mode 100644 dgp/gui/widgets.py create mode 100644 dgp/gui/workspace.py create mode 100644 dgp/gui/workspaces/BaseTab.py create mode 100644 dgp/gui/workspaces/LineTab.py create mode 100644 dgp/gui/workspaces/MapTab.py create mode 100644 dgp/gui/workspaces/PlotTab.py create mode 100644 dgp/gui/workspaces/TransformTab.py create mode 100644 dgp/gui/workspaces/__init__.py diff --git a/dgp/gui/main.py b/dgp/gui/main.py index e7e61a8..0cee22a 100644 --- a/dgp/gui/main.py +++ b/dgp/gui/main.py @@ -21,7 +21,7 @@ LOG_COLOR_MAP, get_project_file) from dgp.gui.dialogs import (AddFlightDialog, CreateProjectDialog, AdvancedImportDialog) -from dgp.gui.widgets import FlightTab, FlightWorkspace +from dgp.gui.workspace import FlightTab from dgp.gui.ui.main_window import Ui_MainWindow @@ -91,7 +91,7 @@ def __init__(self, project: Union[prj.GravityProject, self._default_status_timeout = 5000 # Status Msg timeout in milli-sec # Issue #50 Flight Tabs - self._flight_tabs = self.flight_tabs # type: FlightWorkspace + self._flight_tabs = self.flight_tabs # type: QtWidgets.QTabWidget # self._flight_tabs = CustomTabWidget() self._open_tabs = {} # Track opened tabs by {uid: tab_widget, ...} diff --git a/dgp/gui/models.py b/dgp/gui/models.py index b1a08c8..506a942 100644 --- a/dgp/gui/models.py +++ b/dgp/gui/models.py @@ -425,11 +425,9 @@ def __init__(self, channels: List[DataChannel], plots: int, parent=None): def move_channel(self, uid: str, dest_row: int): """Used to programatically move a channel by uid to the header at index: dest_row""" - print("in move_channel") channel = self.channels.get(uid, None) if channel is None: return False - print("moving channel: ", channel) src_index = self.index(channel.parent.row(), 0) self.beginRemoveRows(src_index, channel.row(), channel.row()) diff --git a/dgp/gui/plotter2.py b/dgp/gui/plotter2.py deleted file mode 100644 index 14df296..0000000 --- a/dgp/gui/plotter2.py +++ /dev/null @@ -1,263 +0,0 @@ -# coding: utf-8 - -# PROTOTYPE new LineGrabPlot class based on mplutils utility classes -import logging - -import matplotlib as mpl -from PyQt5.QtWidgets import QSizePolicy, QMenu, QAction, QWidget, QToolBar -from PyQt5.QtCore import pyqtSignal, QMimeData -from PyQt5.QtGui import QCursor, QDropEvent, QDragEnterEvent, QDragMoveEvent -import PyQt5.QtCore as QtCore -import PyQt5.QtWidgets as QtWidgets -from matplotlib.backends.backend_qt5agg import ( - FigureCanvasQTAgg as FigureCanvas, NavigationToolbar2QT) -from matplotlib.figure import Figure -from matplotlib.axes import Axes -from matplotlib.dates import DateFormatter, num2date, date2num -from matplotlib.ticker import NullFormatter, NullLocator, AutoLocator -from matplotlib.backend_bases import MouseEvent, PickEvent -from matplotlib.patches import Rectangle -from matplotlib.lines import Line2D -from matplotlib.text import Annotation -import numpy as np - -from dgp.lib.project import Flight - -from ..lib.types import DataChannel, LineUpdate -from .mplutils import * - - -_log = logging.getLogger(__name__) - -####### -# WIP # -####### - - -"""Design Requirements of FlightLinePlot: - -Use Case: -FlightLinePlot (FLP) is designed for a specific use case, where the user may -plot raw Gravity and GPS data channels on a synchronized x-axis plot in order to -select distinct 'lines' of data (where the Ship or Aircraft has turned to -another heading). - -Requirements: - - Able to display 2-4 plots displayed in a row with a linked x-axis scale. - - Each plot must have dual y-axis scales and should limit the number of lines -plotted to 1 per y-axis to allow for plotting of different channels of widely -varying amplitudes. -- User can enable a 'line selection mode' which allows the user to -graphically specify flight lines through the following functionality: - - On click, a new semi-transparent rectangle 'patch' is created across all - visible axes. If there is no patch in the area already. - - On drag of a patch, it should follow the mouse, allowing the user to - adjust its position. - - On click and drag of the edge of any patch it should resize to the extent - of the movement, allowing the user to resize the patches. - - On right-click of a patch, a context menu should be displayed allowing - user to label, or delete, or specify precise (spinbox) x/y limits of the patch - -""" - -__all__ = ['FlightLinePlot'] - - -class BasePlottingCanvas(FigureCanvas): - """ - BasePlottingCanvas sets up the basic Qt FigureCanvas parameters, and is - designed to be subclassed for different plot types. - Mouse events are connected to the canvas here, and the handlers should be - overriden in sub-classes to provide custom actions. - """ - def __init__(self, parent=None, width=8, height=4, dpi=100): - super().__init__(Figure(figsize=(width, height), dpi=dpi, - tight_layout=True)) - - self.setParent(parent) - super().setSizePolicy(QSizePolicy.Expanding, QSizePolicy.Expanding) - super().updateGeometry() - - self.figure.canvas.mpl_connect('pick_event', self.onpick) - self.figure.canvas.mpl_connect('button_press_event', self.onclick) - self.figure.canvas.mpl_connect('button_release_event', self.onrelease) - self.figure.canvas.mpl_connect('motion_notify_event', self.onmotion) - - def onclick(self, event: MouseEvent): - pass - - def onrelease(self, event: MouseEvent): - pass - - def onmotion(self, event: MouseEvent): - pass - - def onpick(self, event: PickEvent): - pass - - -class FlightLinePlot(BasePlottingCanvas): - linechanged = pyqtSignal(LineUpdate) - - def __init__(self, flight, rows=3, width=8, height=4, dpi=100, - parent=None, **kwargs): - _log.debug("Initializing FlightLinePlot") - super().__init__(parent=parent, width=width, height=height, dpi=dpi) - - self._flight = flight - self.mgr = kwargs.get('axes_mgr', None) or StackedAxesManager( - self.figure, rows=rows) - self.pm = kwargs.get('patch_mgr', None) or PatchManager(parent=parent) - - self._home_action = QAction("Home") - self._home_action.triggered.connect(lambda *args: print("Home Clicked")) - self._zooming = False - self._panning = False - self._grab_lines = False - self._toolbar = None - - def set_mode(self, grab=True): - self._grab_lines = grab - - def get_toolbar(self, home_callback=None): - """Configure and return the Matplotlib Toolbar used to interactively - control the plot area. - Here we replace the default MPL Home action with a custom action, - and attach additional callbacks to the Pan and Zoom buttons. - """ - if self._toolbar is not None: - return self._toolbar - - def toggle(action): - if action.lower() == 'zoom': - print("Toggling zoom") - self._panning = False - self._zooming = not self._zooming - elif action.lower() == 'pan': - print("Toggling Pan") - self._zooming = False - self._panning = not self._panning - else: - self._zooming = False - self._panning = False - - tb = NavigationToolbar2QT(self, parent=None) - _home = tb.actions()[0] - - new_home = QAction(_home.icon(), "Home", parent=tb) - home_callback = home_callback or (lambda *args: None) - new_home.triggered.connect(home_callback) - new_home.setToolTip("Reset View") - tb.insertAction(_home, new_home) - tb.removeAction(_home) - - tb.actions()[4].triggered.connect(lambda x: toggle('pan')) - tb.actions()[5].triggered.connect(lambda x: toggle('zoom')) - self._toolbar = tb - return tb - - def add_series(self, channel: DataChannel, row=0, draw=True): - self.mgr.add_series(channel.series(), row=row, uid=channel.uid) - - def onclick(self, event: MouseEvent): - if not self._grab_lines or self._zooming or self._panning: - print("Not in correct mode") - return - # If the event didn't occur within an Axes, ignore it - if event.inaxes not in self.mgr: - return - - # Else, process the click event - # Get the patch group at click loc if it exists - active = self.pm.select(event.xdata, inner=False) - print("Active group: ", active) - - # Right Button - if event.button == 3 and active: - cursor = QCursor() - self._pop_menu.popup(cursor.pos()) - return - - # Left Button - elif event.button == 1 and not active: - print("Creating new patch group") - patches = [] - for ax, twin in self.mgr: - xmin, xmax = ax.get_xlim() - width = (xmax - xmin) * 0.05 - x0 = event.xdata - width / 2 - y0, y1 = ax.get_ylim() - rect = Rectangle((x0, y0), width, height=1, alpha=0.1, - edgecolor='black', linewidth=2, picker=True) - patch = ax.add_patch(rect) - patch.set_picker(True) - ax.draw_artist(patch) - patches.append(patch) - pg = RectanglePatchGroup(*patches) - self.pm.add_group(pg) - self.draw() - - if self._flight.uid is not None: - self.linechanged.emit( - LineUpdate(flight_id=self._flight.uid, - action='add', - uid=pg.uid, - start=pg.start(), - stop=pg.stop(), - label=None)) - return - # Middle Button/Misc Button - else: - return - - def onmotion(self, event: MouseEvent) -> None: - """ - Event Handler: Pass any motion events to the AxesGroup to handle, - as long as the user is not Panning or Zooming. - - Parameters - ---------- - event : MouseEvent - Matplotlib MouseEvent object with event parameters - - Returns - ------- - None - - """ - if self._zooming or self._panning: - return - self.pm.onmotion(event) - - def onrelease(self, event: MouseEvent) -> None: - """ - Event Handler: Process event and emit any changes made to the active - Patch group (if any) upon mouse release. - - Parameters - ---------- - event : MouseEvent - Matplotlib MouseEvent object with event parameters - - Returns - ------- - None - - """ - if self._zooming or self._panning: - self.pm.rescale_patches() - self.draw() - return - - active = self.pm.active - if active is not None: - if active.modified: - self.linechanged.emit( - LineUpdate(flight_id=self._flight.uid, - action='modify', - uid=active.uid, - start=active.start(), - stop=active.stop(), - label=active.label)) - self.pm.deselect() - self.figure.canvas.draw() diff --git a/dgp/gui/plotting/__init__.py b/dgp/gui/plotting/__init__.py new file mode 100644 index 0000000..e69de29 diff --git a/dgp/gui/plotting/backends.py b/dgp/gui/plotting/backends.py new file mode 100644 index 0000000..0a2e4ec --- /dev/null +++ b/dgp/gui/plotting/backends.py @@ -0,0 +1,462 @@ +# coding: utf-8 + +from abc import ABCMeta, abstractmethod +from functools import partial, partialmethod +from itertools import cycle +from typing import Union + +from PyQt5.QtCore import pyqtSignal +import PyQt5.QtWidgets as QtWidgets +import pandas as pd +from matplotlib.axes import Axes +from matplotlib.backend_bases import MouseEvent, PickEvent +from matplotlib.backends.backend_qt5agg import (FigureCanvasQTAgg) +from matplotlib.dates import DateFormatter +from matplotlib.figure import Figure +from matplotlib.gridspec import GridSpec +from matplotlib.lines import Line2D +from matplotlib.ticker import AutoLocator +from pyqtgraph.widgets.GraphicsView import GraphicsView +from pyqtgraph.graphicsItems.GraphicsLayout import GraphicsLayout +from pyqtgraph.graphicsItems.AxisItem import AxisItem +from pyqtgraph.graphicsItems.PlotDataItem import PlotDataItem +from pyqtgraph.graphicsItems.InfiniteLine import InfiniteLine +from pyqtgraph.graphicsItems.ViewBox import ViewBox +from pyqtgraph.graphicsItems.LinearRegionItem import LinearRegionItem +from pyqtgraph.widgets.PlotWidget import PlotWidget, PlotItem +from pyqtgraph import SignalProxy + +""" +Rationale for StackedMPLWidget and StackedPGWidget: +Each of these classes should act as a drop-in replacement for the other, +presenting as a single widget that can be added to a Qt Layout. +Both of these classes are designed to create a variable number of plots +'stacked' on top of each other - as in rows. +MPLWidget will thus contain a series of Axes classes which can be used to +plot on +PGWidget will contain a series of PlotItem classes which likewise can be used to +plot. + +It remains to be seen if the Interface/ABC SeriesPlotter and its descendent +classes PlotWidgetWrapper and MPLAxesWrapper are necessary - the intent of +these classes was to wrap a PlotItem or Axes and provide a unified standard +interface for plotting. However, the Stacked*Widget classes might nicely +encapsulate what was intended there. +""" +__all__ = ['PYQTGRAPH', 'MATPLOTLIB', 'BasePlot', 'StackedMPLWidget', + 'PyQtGridPlotWidget', + 'SeriesPlotter'] + +PYQTGRAPH = 'pqg' +MATPLOTLIB = 'mpl' + + +class BasePlot: + """Creates a new Plot Widget with the specified backend (Matplotlib, + or PyQtGraph), or returns a StackedMPLWidget if none specified.""" + def __new__(cls, *args, **kwargs): + backend = kwargs.get('backend', '') + if backend.lower() == PYQTGRAPH: + kwargs.pop('backend') + # print("Initializing StackedPGWidget with KWArgs: ", kwargs) + return PyQtGridPlotWidget(*args, **kwargs) + else: + return StackedMPLWidget(*args, **kwargs) + + +class DateAxis(AxisItem): + minute = pd.Timedelta(minutes=1).value + hour = pd.Timedelta(hours=1).value + day = pd.Timedelta(days=2).value + + def tickStrings(self, values, scale, spacing): + """ + + Parameters + ---------- + values : List + List of values to return strings for + scale : Scalar + Used for SI notation prefixes + spacing : Scalar + Spacing between values/ticks + + Returns + ------- + List of strings used to label the plot at the given values + + Notes + ----- + This function may be called multiple times for the same plot, + where multiple tick-levels are defined i.e. Major/Minor/Sub-Minor ticks. + The range of the values may also differ between invocations depending on + the positioning of the chart. And the spacing will be different + dependent on how the ticks were placed by the tickSpacing() method. + + """ + if not values: + rng = 0 + else: + rng = max(values) - min(values) + + labels = [] + # TODO: Maybe add special tick format for first tick + if rng < self.minute: + fmt = '%H:%M:%S' + + elif rng < self.hour: + fmt = '%H:%M:%S' + elif rng < self.day: + fmt = '%H:%M' + else: + if spacing > self.day: + fmt = '%y:%m%d' + elif spacing >= self.hour: + fmt = '%H' + else: + fmt = '' + + for x in values: + try: + labels.append(pd.to_datetime(x).strftime(fmt)) + except ValueError: # Windows can't handle dates before 1970 + labels.append('') + except OSError: + pass + return labels + + def tickSpacing(self, minVal, maxVal, size): + """ + The return value must be a list of tuples, one for each set of ticks:: + + [ + (major tick spacing, offset), + (minor tick spacing, offset), + (sub-minor tick spacing, offset), + ... + ] + + """ + rng = pd.Timedelta(maxVal - minVal).value + # offset = pd.Timedelta(seconds=36).value + offset = 0 + if rng < pd.Timedelta(minutes=5).value: + mjrspace = pd.Timedelta(seconds=15).value + mnrspace = pd.Timedelta(seconds=5).value + elif rng < self.hour: + mjrspace = pd.Timedelta(minutes=5).value + mnrspace = pd.Timedelta(minutes=1).value + elif rng < self.day: + mjrspace = pd.Timedelta(hours=1).value + mnrspace = pd.Timedelta(minutes=5).value + else: + return [(pd.Timedelta(hours=12).value, offset)] + + spacing = [ + (mjrspace, offset), # Major + (mnrspace, offset) # Minor + ] + return spacing + + +class StackedMPLWidget(FigureCanvasQTAgg): + def __init__(self, rows=1, sharex=True, width=8, height=4, dpi=100, + parent=None): + super().__init__(Figure(figsize=(width, height), dpi=dpi, + tight_layout=True)) + self.setParent(parent) + super().setSizePolicy(QtWidgets.QSizePolicy.Expanding, + QtWidgets.QSizePolicy.Expanding) + super().updateGeometry() + + self.figure.canvas.mpl_connect('pick_event', self.onpick) + self.figure.canvas.mpl_connect('button_press_event', self.onclick) + self.figure.canvas.mpl_connect('button_release_event', self.onrelease) + self.figure.canvas.mpl_connect('motion_notify_event', self.onmotion) + + self._plots = [] + self.plots = [] + + spec = GridSpec(nrows=rows, ncols=1) + for row in range(rows): + if row >= 1 and sharex: + plot = self.figure.add_subplot(spec[row], sharex=self._plots[0]) + else: + plot = self.figure.add_subplot(spec[row]) + + if row == rows - 1: + # Add x-axis ticks on last plot only + plot.xaxis.set_major_locator(AutoLocator()) + # TODO: Dynamically apply this + plot.xaxis.set_major_formatter(DateFormatter("%H:%M:%S")) + self._plots.append(plot) + self.plots.append(MPLAxesWrapper(plot, self.figure.canvas)) + + def __len__(self): + return len(self._plots) + + def get_plot(self, row) -> 'SeriesPlotter': + return self.plots[row] + + def onclick(self, event: MouseEvent): + pass + + def onrelease(self, event: MouseEvent): + pass + + def onmotion(self, event: MouseEvent): + pass + + def onpick(self, event: PickEvent): + pass + + +class PyQtGridPlotWidget(GraphicsView): + def __init__(self, rows=1, cols=1, background='w', grid=True, + sharex=True, sharey=False, tickFormatter='date', parent=None): + super().__init__(parent=parent, background=background) + self._gl = GraphicsLayout(parent=parent) + self.setCentralItem(self._gl) + self._plots = [] + self._wrapped = [] + # Store ref to signal proxies so they are not GC'd + self._sigproxies = [] + + for row in range(rows): + for col in range(cols): + date_fmtr = None + if tickFormatter == 'date': + date_fmtr = DateAxis(orientation='bottom') + plot = self._gl.addPlot(row=row, col=col, background=background, + axisItems={'bottom': date_fmtr}) + plot.getAxis('left').setWidth(40) + + if len(self._plots) > 0: + if sharex: + plot.setXLink(self._plots[0]) + if sharey: + plot.setYLink(self._plots[0]) + + plot.showGrid(x=grid, y=grid) + plot.addLegend(offset=(-15, 15)) + self._plots.append(plot) + self._wrapped.append(PlotWidgetWrapper(plot)) + + def __len__(self): + return len(self._plots) + + def add_series(self, series, idx=0, *args, **kwargs): + return self._wrapped[idx].add_series(series, *args, **kwargs) + + def remove_series(self, series): + for plot in self._wrapped: + plot.remove_series(id(series)) + + def add_onclick_handler(self, slot, rateLimit=60): + sp = SignalProxy(self._gl.scene().sigMouseClicked, rateLimit=rateLimit, + slot=slot) + self._sigproxies.append(sp) + return sp + + @property + def plots(self): + return self._wrapped + + def get_plot(self, row): + return self._plots[row] + + +class SeriesPlotter(metaclass=ABCMeta): + """ + Abstract Base Class used to define an interface for different plotter + wrappers. + + """ + sigItemPlotted = pyqtSignal() + + colors = ['r', 'g', 'b', 'g'] + colorcycle = cycle([{'color': v} for v in colors]) + + def __getattr__(self, item): + """Passes attribute calls to underlying plotter object if no override + in SeriesPlotter implementation.""" + if hasattr(self.plotter, item): + attr = getattr(self.plotter, item) + return attr + raise AttributeError(item) + + @property + @abstractmethod + def plotter(self) -> Union[Axes, PlotWidget]: + """This property should return the underlying plot object, either a + Matplotlib Axes or a PyQtgraph PlotWidget""" + pass + + @property + @abstractmethod + def items(self): + """This property should return a list or a generator which yields the + items plotted on the plot.""" + pass + + @abstractmethod + def plot(self, *args, **kwargs): + pass + + @abstractmethod + def add_series(self, series, *args, **kwargs): + pass + + @abstractmethod + def remove_series(self, series): + pass + + @abstractmethod + def draw(self) -> None: + pass + + @abstractmethod + def clear(self) -> None: + """This method should clear all items from the Plotter""" + pass + + @abstractmethod + def get_xlim(self): + pass + + @abstractmethod + def get_ylim(self): + pass + + +class PlotWidgetWrapper(SeriesPlotter): + def __init__(self, plot: PlotItem): + + self._plot = plot + self._lines = {} # id(Series): line + self._data = {} # id(Series): series + + def __len__(self): + return len(self._lines) + + @property + def plotter(self) -> PlotWidget: + return self._plot + + @property + def _plotitem(self) -> PlotItem: + # return self._plot.plotItem + return self._plot + + @property + def items(self): + for item in self._lines.values(): + yield item + + def plot(self, x, y, *args, **kwargs): + if isinstance(x, pd.Series): + + pass + else: + self._plot.plot(x, y, *args, **kwargs) + + pass + + def add_series(self, series: pd.Series, fmter='date', *args, **kwargs): + """Take in a pandas Series, add it to the plot and retain a + reference. + + Parameters + ---------- + series : pd.Series + fmter : str + 'date' or 'scalar' + Set the plot to use a date formatter or scalar formatter on the + x-axis + """ + sid = id(series) + if sid in self._lines: + print("Series already plotted") + return + xvals = pd.to_numeric(series.index, errors='coerce') + yvals = pd.to_numeric(series.values, errors='coerce') + + line = self._plot.plot(x=xvals, y=yvals, + name=series.name, + pen=next(self.colorcycle)) # type: PlotDataItem + self._lines[sid] = line + # self.sigItemPlotted.emit() + return line + + def remove_series(self, sid): + # sid = id(series) + if sid not in self._lines: + return + self._plotitem.legend.removeItem(self._lines[sid].name()) + self._plot.removeItem(self._lines[sid]) + del self._lines[sid] + + def draw(self): + """Draw is uncecesarry for Pyqtgraph plots""" + pass + + def clear(self): + pass + + def get_ylim(self): + return self._plotitem.vb.viewRange()[1] + + def get_xlim(self): + return self._plotitem.vb.viewRange()[0] + + +class MPLAxesWrapper(SeriesPlotter): + + def __init__(self, plot, canvas): + assert isinstance(plot, Axes) + self._plot = plot + self._lines = {} # id(Series): Line2D + self._canvas = canvas # type: FigureCanvas + + @property + def plotter(self) -> Axes: + return self._plot + + @property + def items(self): + for item in self._lines.values(): + yield item + + def plot(self, *args, **kwargs): + pass + + def add_series(self, series, *args, **kwargs): + line = self._plot.plot(series.index, series.values, + color=next(self.colorcycle)['color'], + label=series.name) + self._lines[id(series)] = line + self.draw() + return line + + def remove_series(self, series): + sid = id(series) + if sid not in self._lines: + return + line = self._lines[sid] # type: Line2D + line.remove() + del self._lines[sid] + + def draw(self) -> None: + self._canvas.draw() + + def clear(self) -> None: + for sid in [s for s in self._lines]: + item = self._lines[sid] + item.remove() + del self._lines[sid] + + def get_ylim(self): + return self._plot.get_ylim() + + def get_xlim(self): + return self._plot.get_xlim() diff --git a/dgp/gui/plotting/flightregion.py b/dgp/gui/plotting/flightregion.py new file mode 100644 index 0000000..5b10c3e --- /dev/null +++ b/dgp/gui/plotting/flightregion.py @@ -0,0 +1,37 @@ +# coding: utf-8 + +import PyQt5.QtCore as QtCore +from PyQt5.QtWidgets import QMenu, QAction +from pyqtgraph.graphicsItems.LinearRegionItem import LinearRegionItem + + +class LinearFlightRegion(LinearRegionItem): + """Custom LinearRegionItem class to provide override methods on various + click events.""" + def __init__(self, values=(0, 1), + orientation=LinearRegionItem.Vertical, brush=None, + movable=True, bounds=None, parent=None): + super().__init__(values=values, orientation=orientation, brush=brush, + movable=movable, bounds=bounds) + + self.parent = parent + self._menu = QMenu() + self._menu.addAction(QAction('Remove', self, triggered=self._remove)) + + def mouseClickEvent(self, ev): + if ev.button() == QtCore.Qt.RightButton and not self.moving: + ev.accept() + pos = ev.screenPos().toPoint() + pop_point = QtCore.QPoint(pos.x(), pos.y()) + self._menu.popup(pop_point) + return True + else: + return super().mouseClickEvent(ev) + + def _remove(self): + try: + self.parent.remove(self) + except AttributeError: + return + + diff --git a/dgp/gui/mplutils.py b/dgp/gui/plotting/mplutils.py similarity index 98% rename from dgp/gui/mplutils.py rename to dgp/gui/plotting/mplutils.py index 54929e5..f2b6573 100644 --- a/dgp/gui/mplutils.py +++ b/dgp/gui/plotting/mplutils.py @@ -7,7 +7,8 @@ from typing import Union, Tuple, Dict, List from datetime import datetime, timedelta -from PyQt5 import QtCore +import PyQt5.QtCore as QtCore + from pandas import Series from matplotlib.figure import Figure from matplotlib.axes import Axes @@ -54,6 +55,11 @@ def _pad(xy0: float, xy1: float, pct=0.05): return xy0 - pad, xy1 + pad +# TODO: This is not general enough +# Plan to create a StackedMPLWidget and StackedPGWidget which will contain +# Matplotlib subplot-Axes or pyqtgraph PlotItems. +# The xWidget will provide the Qt Widget to be added to the GUI, and provide +# methods for interacting with plots on specific rows. class StackedAxesManager: """ StackedAxesManager is used to generate and manage a subplots on a @@ -801,3 +807,5 @@ def _patch_center(patch) -> Tuple[int, int]: ylims = patch.axes.get_ylim() cy = ylims[0] + abs(ylims[1] - ylims[0]) * 0.5 return cx, cy + + diff --git a/dgp/gui/plotter.py b/dgp/gui/plotting/plotters.py similarity index 80% rename from dgp/gui/plotter.py rename to dgp/gui/plotting/plotters.py index 3bec90a..2939c5e 100644 --- a/dgp/gui/plotter.py +++ b/dgp/gui/plotting/plotters.py @@ -1,45 +1,318 @@ # coding: utf-8 """ -Class to handle Matplotlib plotting of data to be displayed in Qt GUI +Definitions for task specific plot interfaces. """ - -from dgp.lib.etc import gen_uuid - import logging from collections import namedtuple -from typing import Dict, Tuple, Union +from itertools import count +from typing import Dict, Tuple, Union, List from datetime import timedelta -from PyQt5.QtWidgets import QSizePolicy, QMenu, QAction, QWidget, QToolBar -from PyQt5.QtCore import pyqtSignal, QMimeData -from PyQt5.QtGui import QCursor, QDropEvent, QDragEnterEvent, QDragMoveEvent +import numpy as np +import pandas as pd import PyQt5.QtCore as QtCore import PyQt5.QtWidgets as QtWidgets + +from PyQt5.QtWidgets import QSizePolicy, QAction, QWidget, QMenu, QToolBar +from PyQt5.QtCore import pyqtSignal, QMimeData +from PyQt5.QtGui import QCursor, QDropEvent, QDragEnterEvent, QDragMoveEvent from matplotlib.backends.backend_qt5agg import ( - FigureCanvasQTAgg as FigureCanvas, NavigationToolbar2QT as NavigationToolbar) + FigureCanvasQTAgg as FigureCanvas, NavigationToolbar2QT) from matplotlib.figure import Figure -from matplotlib.axes import Axes -from matplotlib.dates import DateFormatter, num2date, date2num -from matplotlib.ticker import NullFormatter, NullLocator, AutoLocator from matplotlib.backend_bases import MouseEvent, PickEvent from matplotlib.patches import Rectangle +from matplotlib.axes import Axes +from matplotlib.dates import DateFormatter, num2date, date2num +from matplotlib.ticker import AutoLocator from matplotlib.lines import Line2D from matplotlib.text import Annotation -import numpy as np -from dgp.lib.project import Flight import dgp.lib.types as types +from dgp.lib.project import Flight +from dgp.lib.types import DataChannel, LineUpdate +from dgp.lib.etc import gen_uuid +from .mplutils import * +from .backends import BasePlot, PYQTGRAPH, MATPLOTLIB, SeriesPlotter +from .flightregion import LinearFlightRegion +import pyqtgraph as pg +from pyqtgraph.graphicsItems.LinearRegionItem import LinearRegionItem _log = logging.getLogger(__name__) + + +class TransformPlot: + """Plot interface used for displaying transformation results. + May need to display data plotted against time series or scalar series. + """ + def __init__(self, rows=2, cols=1, sharex=True, sharey=False, grid=True, + parent=None): + self.widget = BasePlot(backend=PYQTGRAPH, rows=rows, cols=cols, + sharex=sharex, sharey=sharey, grid=grid, + background='w', parent=parent) + + @property + def plots(self) -> List[SeriesPlotter]: + return self.widget.plots + + +class PqtLineSelectPlot(QtCore.QObject): + """New prototype Flight Line selection plot using Pyqtgraph as the + backend. + Much work to be done here still + """ + line_changed = pyqtSignal(LineUpdate) + + def __init__(self, flight, rows=3, parent=None): + super().__init__(parent=parent) + self.widget = BasePlot(backend=PYQTGRAPH, rows=rows, cols=1, + sharex=True, grid=True, background='w', + parent=parent) + self._flight = flight + self.widget.add_onclick_handler(self.onclick) + self._lri_id = count(start=1) + self._selections = {} + self._group_map = {} + self._updating = False + + # Rate-limit line updates using a timer. + self._line_update = None + self._upd_timer = QtCore.QTimer(self) + self._upd_timer.setInterval(50) + self._upd_timer.timeout.connect(self._update_done) + + self._selecting = False + + def __getattr__(self, item): + try: + return getattr(self.widget, item) + except AttributeError: + raise AttributeError("Plot Widget has no Attribute: ", item) + + def __len__(self): + return len(self.widget) + + @property + def selection_mode(self): + return self._selecting + + @selection_mode.setter + def selection_mode(self, value): + self._selecting = bool(value) + for group in self._selections.values(): + for lfr in group: # type: LinearFlightRegion + lfr.setMovable(value) + + def add_patch(self, *args): + return self.add_linked_selection(*args) + pass + + @property + def plots(self) -> List[SeriesPlotter]: + return self.widget.plots + + def _check_proximity(self, x, span, proximity=0.03) -> bool: + """ + Check the proximity of a mouse click at location 'x' in relation to + any already existing LinearRegions. + + Parameters + ---------- + x : float + Mouse click position in data coordinate + span : float + X-axis span of the view box + proximity : float + Proximity as a percentage of the view box span + + Returns + ------- + True if x is not in proximity to any existing LinearRegionItems + False if x is within or in proximity to an existing LinearRegionItem + + """ + prox = span * proximity + for group in self._selections.values(): + lri0 = group[0] # type: LinearRegionItem + lx0, lx1 = lri0.getRegion() + if lx0 - prox <= x <= lx1 + prox: + print("New point is too close") + return False + return True + + def onclick(self, ev): + event = ev[0] + try: + pos = event.pos() # type: pg.Point + except AttributeError: + # Avoid error when clicking around plot, due to an attempt to + # call mapFromScene on None in pyqtgraph/mouseEvents.py + return + if event.button() == QtCore.Qt.RightButton: + return + + if event.button() == QtCore.Qt.LeftButton: + if not self.selection_mode: + return + p0 = self.plots[0] + if p0.vb is None: + return + event.accept() + # Map click location to data coordinates + xpos = p0.vb.mapToView(pos).x() + v0, v1 = p0.get_xlim() + vb_span = v1 - v0 + if not self._check_proximity(xpos, vb_span): + return + + start = xpos - (vb_span * 0.05) + stop = xpos + (vb_span * 0.05) + self.add_linked_selection(start, stop) + + def add_linked_selection(self, start, stop, uid=None, label=None): + """ + Add a LinearFlightRegion selection across all linked x-axes at xpos + """ + + if isinstance(start, pd.Timestamp): + start = start.value + if isinstance(stop, pd.Timestamp): + stop = stop.value + patch_region = [start, stop] + + lfr_group = [] + grpid = uid or gen_uuid('flr') + update = LineUpdate(self._flight.uid, 'add', grpid, + pd.to_datetime(start), pd.to_datetime(stop), None) + + for i, plot in enumerate(self.plots): + lfr = LinearFlightRegion(parent=self) + plot.addItem(lfr) + lfr.setRegion(patch_region) + lfr.setMovable(self._selecting) + lfr_group.append(lfr) + lfr.sigRegionChanged.connect(self.update) + self._group_map[lfr] = grpid + + self._selections[grpid] = lfr_group + self.line_changed.emit(update) + + def remove(self, item): + if not isinstance(item, LinearFlightRegion): + return + + grpid = self._group_map.get(item, None) + if grpid is None: + return + update = LineUpdate(self._flight.uid, 'remove', grpid, + pd.to_datetime(1), pd.to_datetime(1), None) + grp = self._selections[grpid] + for i, plot in enumerate(self.plots): + plot.removeItem(grp[i]) + self.line_changed.emit(update) + + def update(self, item: LinearRegionItem): + """Update other LinearRegionItems in the group of 'item' to match the + new region. + We must set a flag here as we only want to process updates from the + first source - as this update will be called during the update + process because LinearRegionItem.setRegion() raises a + sigRegionChanged event.""" + if self._updating: + return + + self._upd_timer.start() + self._updating = True + self._line_update = item + new_region = item.getRegion() + grpid = self._group_map[item] + group = self._selections[grpid] + for select in group: # type: LinearRegionItem + if select is item: + continue + select.setRegion(new_region) + self._updating = False + + def _update_done(self): + self._upd_timer.stop() + x0, x1 = self._line_update.getRegion() + uid = self._group_map[self._line_update] + update = LineUpdate(self._flight.uid, 'modify', uid, pd.to_datetime(x0), + pd.to_datetime(x1), None) + self.line_changed.emit(update) + self._line_update = None + + +"""Design Requirements of FlightLinePlot: + +Use Case: +FlightLinePlot (FLP) is designed for a specific use case, where the user may +plot raw Gravity and GPS data channels on a synchronized x-axis plot in order to +select distinct 'lines' of data (where the Ship or Aircraft has turned to +another heading). + +Requirements: + - Able to display 2-4 plots displayed in a row with a linked x-axis scale. + - Each plot must have dual y-axis scales and should limit the number of lines +plotted to 1 per y-axis to allow for plotting of different channels of widely +varying amplitudes. +- User can enable a 'line selection mode' which allows the user to +graphically specify flight lines through the following functionality: + - On click, a new semi-transparent rectangle 'patch' is created across all + visible axes. If there is no patch in the area already. + - On drag of a patch, it should follow the mouse, allowing the user to + adjust its position. + - On click and drag of the edge of any patch it should resize to the extent + of the movement, allowing the user to resize the patches. + - On right-click of a patch, a context menu should be displayed allowing + user to label, or delete, or specify precise (spinbox) x/y limits of the patch + +""" + + +class BasePlottingCanvas(FigureCanvas): + """ + BasePlottingCanvas sets up the basic Qt FigureCanvas parameters, and is + designed to be subclassed for different plot types. + Mouse events are connected to the canvas here, and the handlers should be + overriden in sub-classes to provide custom actions. + """ + def __init__(self, parent=None, width=8, height=4, dpi=100): + super().__init__(Figure(figsize=(width, height), dpi=dpi, + tight_layout=True)) + + self.setParent(parent) + super().setSizePolicy(QSizePolicy.Expanding, QSizePolicy.Expanding) + super().updateGeometry() + + self.figure.canvas.mpl_connect('pick_event', self.onpick) + self.figure.canvas.mpl_connect('button_press_event', self.onclick) + self.figure.canvas.mpl_connect('button_release_event', self.onrelease) + self.figure.canvas.mpl_connect('motion_notify_event', self.onmotion) + + def onclick(self, event: MouseEvent): + pass + + def onrelease(self, event: MouseEvent): + pass + + def onmotion(self, event: MouseEvent): + pass + + def onpick(self, event: PickEvent): + pass + + +# This code will eventually be replaced with newer classes based on +# interoperability between MPL and PQG EDGE_PROX = 0.005 # Monkey patch the MPL Nav toolbar home button. We'll provide custom action # by attaching a event listener to the toolbar action trigger. # Save the default home method in case another plot desires the default behavior -NT_HOME = NavigationToolbar.home -NavigationToolbar.home = lambda *args: None +NT_HOME = NavigationToolbar2QT.home +NavigationToolbar2QT.home = lambda *args: None class AxesGroup: @@ -686,10 +959,6 @@ def onmotion(self, event: MouseEvent): pass -LineUpdate = namedtuple('LineUpdate', ['flight_id', 'action', 'uid', 'start', - 'stop', 'label']) - - class LineGrabPlot(BasePlottingCanvas, QWidget): """ LineGrabPlot implements BasePlottingCanvas and provides an onclick method to @@ -861,9 +1130,9 @@ def _label_patch(self): pg = self.ax_grp.active # Replace custom SetLineLabelDialog with builtin QInputDialog text, ok = QtWidgets.QInputDialog.getText(self, - "Enter Label", - "Line Label:", - text=pg.label) + "Enter Label", + "Line Label:", + text=pg.label) if not ok: self.ax_grp.deselect() return @@ -1227,14 +1496,10 @@ def get_toolbar(self, parent=None) -> QToolBar: Matplotlib Qt Toolbar used to control this plot instance """ if self._toolbar is None: - toolbar = NavigationToolbar(self, parent=parent) + toolbar = NavigationToolbar2QT(self, parent=parent) toolbar.actions()[0].triggered.connect(self.home) toolbar.actions()[4].triggered.connect(self.toggle_pan) toolbar.actions()[5].triggered.connect(self.toggle_zoom) self._toolbar = toolbar return self._toolbar - - -class LineSelectionPlot(BasePlottingCanvas): - pass diff --git a/dgp/gui/ui/main_window.py b/dgp/gui/ui/main_window.py index 9ad4d6d..a87d084 100644 --- a/dgp/gui/ui/main_window.py +++ b/dgp/gui/ui/main_window.py @@ -22,7 +22,7 @@ def setupUi(self, MainWindow): self.horizontalLayout = QtWidgets.QHBoxLayout(self.centralwidget) self.horizontalLayout.setContentsMargins(0, 0, 0, 0) self.horizontalLayout.setObjectName("horizontalLayout") - self.flight_tabs = FlightWorkspace(self.centralwidget) + self.flight_tabs = MainWorkspace(self.centralwidget) self.flight_tabs.setObjectName("flight_tabs") self.horizontalLayout.addWidget(self.flight_tabs) MainWindow.setCentralWidget(self.centralwidget) @@ -50,7 +50,7 @@ def setupUi(self, MainWindow): sizePolicy.setVerticalStretch(0) sizePolicy.setHeightForWidth(self.project_dock.sizePolicy().hasHeightForWidth()) self.project_dock.setSizePolicy(sizePolicy) - self.project_dock.setMinimumSize(QtCore.QSize(0, 0)) + self.project_dock.setMinimumSize(QtCore.QSize(198, 165)) self.project_dock.setMaximumSize(QtCore.QSize(524287, 524287)) self.project_dock.setAllowedAreas(QtCore.Qt.LeftDockWidgetArea|QtCore.Qt.RightDockWidgetArea) self.project_dock.setObjectName("project_dock") @@ -322,5 +322,5 @@ def retranslateUi(self, MainWindow): self.action_import_grav.setText(_translate("MainWindow", "Import Gravity")) from dgp.gui.views import ProjectTreeView -from dgp.gui.widgets import FlightWorkspace +from dgp.gui.workspace import MainWorkspace from dgp import resources_rc diff --git a/dgp/gui/ui/main_window.ui b/dgp/gui/ui/main_window.ui index 64c199b..a0b6918 100644 --- a/dgp/gui/ui/main_window.ui +++ b/dgp/gui/ui/main_window.ui @@ -41,7 +41,7 @@ 0 - + @@ -113,8 +113,8 @@ - 0 - 0 + 198 + 165 @@ -625,9 +625,9 @@ - FlightWorkspace + MainWorkspace QTabWidget -
dgp.gui.widgets
+
dgp.gui.workspace
1 diff --git a/dgp/gui/widgets.py b/dgp/gui/widgets.py deleted file mode 100644 index ecc98d5..0000000 --- a/dgp/gui/widgets.py +++ /dev/null @@ -1,369 +0,0 @@ -# coding: utf-8 - -# Class for custom Qt Widgets - -import logging - -from PyQt5.QtGui import (QDropEvent, QDragEnterEvent, QDragMoveEvent, - QContextMenuEvent) -from PyQt5.QtCore import Qt, pyqtSignal, pyqtBoundSignal -from PyQt5.QtWidgets import (QWidget, QVBoxLayout, QHBoxLayout, QGridLayout, - QTabWidget, QTreeView, QSizePolicy) -import PyQt5.QtWidgets as QtWidgets -import PyQt5.QtGui as QtGui -import pyqtgraph as pg -from pyqtgraph.flowchart import Flowchart - -import dgp.gui.models as models -import dgp.lib.types as types -from dgp.lib.enums import DataTypes -from .plotter import LineGrabPlot, LineUpdate -from dgp.lib.project import Flight -from dgp.lib.etc import gen_uuid -from dgp.gui.dialogs import ChannelSelectionDialog -from dgp.lib.transform import * - - -# Experimenting with drag-n-drop and custom widgets -class DropTarget(QWidget): - - def dragEnterEvent(self, event: QDragEnterEvent): - event.acceptProposedAction() - print("Drag entered") - - def dragMoveEvent(self, event: QDragMoveEvent): - event.acceptProposedAction() - - def dropEvent(self, e: QDropEvent): - print("Drop detected") - # mime = e.mimeData() # type: QMimeData - - -class WorkspaceWidget(QWidget): - """Base Workspace Tab Widget - Subclass to specialize function""" - def __init__(self, label: str, flight: Flight, parent=None, **kwargs): - super().__init__(parent, **kwargs) - self.label = label - self._flight = flight - self._uid = gen_uuid('ww') - self._plot = None - - def widget(self): - return None - - @property - def flight(self) -> Flight: - return self._flight - - @property - def plot(self) -> LineGrabPlot: - return self._plot - - @plot.setter - def plot(self, value): - self._plot = value - - def data_modified(self, action: str, dsrc: types.DataSource): - pass - - @property - def uid(self): - return self._uid - - -class PlotTab(WorkspaceWidget): - """Sub-tab displayed within Flight tab interface. Displays canvas for - plotting data series.""" - defaults = {'gravity': 0, 'long': 1, 'cross': 1} - - def __init__(self, label: str, flight: Flight, axes: int, - plot_default=True, **kwargs): - super().__init__(label, flight, **kwargs) - self.log = logging.getLogger('PlotTab') - self.model = None - self._ctrl_widget = None - self._axes_count = axes - self._setup_ui() - self._init_model(plot_default) - - def _setup_ui(self): - vlayout = QVBoxLayout() - top_button_hlayout = QHBoxLayout() - self._select_channels = QtWidgets.QPushButton("Select Channels") - self._select_channels.clicked.connect(self._show_select_dialog) - top_button_hlayout.addWidget(self._select_channels, - alignment=Qt.AlignLeft) - - self._enter_line_selection = QtWidgets.QPushButton("Enter Line " - "Selection Mode") - top_button_hlayout.addWidget(self._enter_line_selection, - alignment=Qt.AlignRight) - vlayout.addLayout(top_button_hlayout) - - self.plot = LineGrabPlot(self.flight, self._axes_count) - for line in self.flight.lines: - self.plot.add_patch(line.start, line.stop, line.uid, line.label) - self.plot.line_changed.connect(self._on_modified_line) - - vlayout.addWidget(self.plot) - vlayout.addWidget(self.plot.get_toolbar(), alignment=Qt.AlignBottom) - self.setLayout(vlayout) - - def _init_model(self, default_state=False): - channels = self.flight.channels - plot_model = models.ChannelListModel(channels, len(self.plot)) - plot_model.plotOverflow.connect(self._too_many_children) - plot_model.channelChanged.connect(self._on_channel_changed) - self.model = plot_model - - if default_state: - self.set_defaults(channels) - - def set_defaults(self, channels): - for name, plot in self.defaults.items(): - for channel in channels: - if channel.field == name.lower(): - self.model.move_channel(channel.uid, plot) - - def _show_select_dialog(self): - dlg = ChannelSelectionDialog(parent=self) - if self.model is not None: - dlg.set_model(self.model) - dlg.show() - - def data_modified(self, action: str, dsrc: types.DataSource): - if action.lower() == 'add': - self.log.info("Adding channels to model.") - n_channels = dsrc.get_channels() - self.model.add_channels(*n_channels) - self.set_defaults(n_channels) - elif action.lower() == 'remove': - self.log.info("Removing channels from model.") - # Re-initialize model - source must be removed from flight first - self._init_model() - else: - return - - def _on_modified_line(self, info: LineUpdate): - if info.uid in [x.uid for x in self.flight.lines]: - if info.action == 'modify': - line = self.flight.get_line(info.uid) - line.start = info.start - line.stop = info.stop - line.label = info.label - self.log.debug("Modified line: start={start}, stop={stop}," - " label={label}" - .format(start=info.start, stop=info.stop, - label=info.label)) - elif info.action == 'remove': - self.flight.remove_line(info.uid) - self.log.debug("Removed line: start={start}, " - "stop={stop}, label={label}" - .format(start=info.start, stop=info.stop, - label=info.label)) - else: - line = types.FlightLine(info.start, info.stop, uid=info.uid) - self.flight.add_line(line) - self.log.debug("Added line to flight {flt}: start={start}, " - "stop={stop}, label={label}" - .format(flt=self.flight.name, start=info.start, - stop=info.stop, label=info.label)) - - def _on_channel_changed(self, new: int, channel: types.DataChannel): - self.plot.remove_series(channel) - if new != -1: - try: - self.plot.add_series(channel, new) - except: - self.log.exception("Error adding series to plot") - self.model.update() - - def _too_many_children(self, uid): - self.log.warning("Too many children for plot: {}".format(uid)) - - -class TransformTab(WorkspaceWidget): - def __init__(self, label: str, flight: Flight): - super().__init__(label, flight) - self._layout = QGridLayout() - self.setLayout(self._layout) - - self.fc = None - self.plots = [] - self._init_flowchart() - self.populate_flowchart() - - def _init_flowchart(self): - fc_terminals = {"Gravity": dict(io='in'), - "Trajectory": dict(io='in'), - "Output": dict(io='out')} - fc = Flowchart(library=LIBRARY, terminals=fc_terminals) - fc_ctrl_widget = fc.widget() - chart_window = fc_ctrl_widget.cwWin - # Force the Flowchart pop-out window to close when the main app exits - chart_window.setAttribute(Qt.WA_QuitOnClose, False) - - fc_ctrl_widget.ui.reloadBtn.setEnabled(False) - self._layout.addWidget(fc_ctrl_widget, 0, 0, 2, 1) - - plot_1 = pg.PlotWidget() - self._layout.addWidget(plot_1, 0, 1) - plot_2 = pg.PlotWidget() - self._layout.addWidget(plot_2, 1, 1) - plot_list = {'Top Plot': plot_1, 'Bottom Plot': plot_2} - - plotnode_1 = fc.createNode('PlotWidget', pos=(0, -150)) - plotnode_1.setPlotList(plot_list) - plotnode_1.setPlot(plot_1) - plotnode_2 = fc.createNode('PlotWidget', pos=(150, -150)) - plotnode_2.setPlotList(plot_list) - plotnode_2.setPlot(plot_2) - - self.plots.append(plotnode_1) - self.plots.append(plotnode_2) - self.fc = fc - - def populate_flowchart(self): - """Populate the flowchart/Transform interface with a default - 'example'/base network of Nodes dependent on available data.""" - if self.fc is None: - return - else: - fc = self.fc - grav = self.flight.get_source(DataTypes.GRAVITY) - gps = self.flight.get_source(DataTypes.TRAJECTORY) - if grav is not None: - fc.setInput(Gravity=grav.load()) - demux = LIBRARY.getNodeType('LineDemux')('Demux', self.flight) - fc.addNode(demux, 'Demux') - - if gps is not None: - fc.setInput(Trajectory=gps.load()) - eotvos = fc.createNode('Eotvos', pos=(0, 0)) - fc.connectTerminals(fc['Trajectory'], eotvos['data_in']) - fc.connectTerminals(eotvos['data_out'], self.plots[0]['In']) - - def data_modified(self, action: str, dsrc: types.DataSource): - """Slot: Called when a DataSource has been added/removed from the - Flight this tab/workspace is associated with.""" - if action.lower() == 'add': - if dsrc.dtype == DataTypes.TRAJECTORY: - self.fc.setInput(Trajectory=dsrc.load()) - elif dsrc.dtype == DataTypes.GRAVITY: - self.fc.setInput(Gravity=dsrc.load()) - - -class MapTab(WorkspaceWidget): - pass - - -class FlightTab(QWidget): - """Top Level Tab created for each Flight object open in the workspace""" - - contextChanged = pyqtSignal(models.BaseTreeModel) # type: pyqtBoundSignal - - def __init__(self, flight: Flight, parent=None, flags=0, **kwargs): - super().__init__(parent=parent, flags=Qt.Widget) - self.log = logging.getLogger(__name__) - self._flight = flight - - self._layout = QVBoxLayout(self) - # _workspace is the inner QTabWidget containing the WorkspaceWidgets - self._workspace = QTabWidget() - self._workspace.setTabPosition(QTabWidget.West) - self._workspace.currentChanged.connect(self._on_changed_context) - self._layout.addWidget(self._workspace) - - # Define Sub-Tabs within Flight space e.g. Plot, Transform, Maps - self._plot_tab = PlotTab(label="Plot", flight=flight, axes=3) - self._workspace.addTab(self._plot_tab, "Plot") - - self._transform_tab = TransformTab("Transforms", flight) - self._workspace.addTab(self._transform_tab, "Transforms") - - # self._map_tab = WorkspaceWidget("Map") - # self._workspace.addTab(self._map_tab, "Map") - - self._context_models = {} - - self._workspace.setCurrentIndex(0) - self._plot_tab.update() - - def subtab_widget(self): - return self._workspace.currentWidget().widget() - - def _on_changed_context(self, index: int): - self.log.debug("Flight {} sub-tab changed to index: {}".format( - self.flight.name, index)) - try: - model = self._workspace.currentWidget().model - self.contextChanged.emit(model) - except AttributeError: - pass - - def new_data(self, dsrc: types.DataSource): - for tab in [self._plot_tab, self._transform_tab]: - tab.data_modified('add', dsrc) - - def data_deleted(self, dsrc): - for tab in [self._plot_tab]: - print("Calling remove for each tab") - tab.data_modified('remove', dsrc) - - @property - def flight(self): - return self._flight - - @property - def plot(self): - return self._plot - - @property - def context_model(self): - """Return the QAbstractModel type for the given context i.e. current - sub-tab of this flight. This enables different sub-tabs of a this - Flight Tab to specify a tree view model to be displayed as the tabs - are switched.""" - current_tab = self._workspace.currentWidget() # type: WorkspaceWidget - return current_tab.model - - -class _FlightTabBar(QtWidgets.QTabBar): - """Custom Tab Bar to allow us to implement a custom Context Menu to - handle right-click events.""" - def __init__(self, parent=None): - super().__init__(parent=parent) - self.setShape(self.RoundedNorth) - self.setTabsClosable(True) - self.setMovable(True) - - self._actions = [] # Store action objects to keep a reference so no GC - # Allow closing tab via Ctrl+W key shortcut - _close_action = QtWidgets.QAction("Close") - _close_action.triggered.connect( - lambda: self.tabCloseRequested.emit(self.currentIndex())) - _close_action.setShortcut(QtGui.QKeySequence("Ctrl+W")) - self.addAction(_close_action) - self._actions.append(_close_action) - - def contextMenuEvent(self, event: QContextMenuEvent, *args, **kwargs): - tab = self.tabAt(event.pos()) - - menu = QtWidgets.QMenu() - menu.setTitle('Tab: ') - kill_action = QtWidgets.QAction("Kill") - kill_action.triggered.connect(lambda: self.tabCloseRequested.emit(tab)) - - menu.addAction(kill_action) - - menu.exec_(event.globalPos()) - event.accept() - - -class FlightWorkspace(QtWidgets.QTabWidget): - """Custom QTabWidget promoted in main_window.ui supporting a custom - TabBar which enables the attachment of custom event actions e.g. right - click context-menus for the tab bar buttons.""" - def __init__(self, parent=None): - super().__init__(parent=parent) - self.setTabBar(_FlightTabBar()) diff --git a/dgp/gui/workspace.py b/dgp/gui/workspace.py new file mode 100644 index 0000000..9236cc9 --- /dev/null +++ b/dgp/gui/workspace.py @@ -0,0 +1,131 @@ +# coding: utf-8 + + +import logging + +from PyQt5.QtGui import QContextMenuEvent +from PyQt5.QtCore import Qt, pyqtSignal, pyqtBoundSignal +from PyQt5.QtWidgets import QWidget, QVBoxLayout, QTabWidget +import PyQt5.QtWidgets as QtWidgets +import PyQt5.QtGui as QtGui + + +from .workspaces import * +import dgp.gui.models as models +import dgp.lib.types as types +from dgp.lib.project import Flight + + +class FlightTab(QWidget): + """Top Level Tab created for each Flight object open in the workspace""" + + contextChanged = pyqtSignal(models.BaseTreeModel) # type: pyqtBoundSignal + + def __init__(self, flight: Flight, parent=None, flags=0, **kwargs): + super().__init__(parent=parent, flags=Qt.Widget) + self.log = logging.getLogger(__name__) + self._flight = flight + + self._layout = QVBoxLayout(self) + # _workspace is the inner QTabWidget containing the WorkspaceWidgets + self._workspace = QTabWidget() + self._workspace.setTabPosition(QTabWidget.West) + self._workspace.currentChanged.connect(self._on_changed_context) + self._layout.addWidget(self._workspace) + + # Define Sub-Tabs within Flight space e.g. Plot, Transform, Maps + self._plot_tab = PlotTab(label="Plot", flight=flight, axes=3) + self._workspace.addTab(self._plot_tab, "Plot") + + self._transform_tab = TransformTab("Transforms", flight) + self._workspace.addTab(self._transform_tab, "Transforms") + + self._line_proc_tab = LineProcessTab("Line Processing", flight) + self._workspace.addTab(self._line_proc_tab, "Line Processing") + + # self._map_tab = WorkspaceWidget("Map") + # self._workspace.addTab(self._map_tab, "Map") + + self._context_models = {} + + self._workspace.setCurrentIndex(0) + self._plot_tab.update() + + def subtab_widget(self): + return self._workspace.currentWidget().widget() + + def _on_changed_context(self, index: int): + self.log.debug("Flight {} sub-tab changed to index: {}".format( + self.flight.name, index)) + try: + model = self._workspace.currentWidget().model + self.contextChanged.emit(model) + except AttributeError: + pass + + def new_data(self, dsrc: types.DataSource): + for tab in [self._plot_tab, self._transform_tab]: + tab.data_modified('add', dsrc) + + def data_deleted(self, dsrc): + for tab in [self._plot_tab]: + print("Calling remove for each tab") + tab.data_modified('remove', dsrc) + + @property + def flight(self): + return self._flight + + @property + def plot(self): + return self._plot + + @property + def context_model(self): + """Return the QAbstractModel type for the given context i.e. current + sub-tab of this flight. This enables different sub-tabs of a this + Flight Tab to specify a tree view model to be displayed as the tabs + are switched.""" + current_tab = self._workspace.currentWidget() # type: WorkspaceWidget + return current_tab.model + + +class _WorkspaceTabBar(QtWidgets.QTabBar): + """Custom Tab Bar to allow us to implement a custom Context Menu to + handle right-click events.""" + def __init__(self, parent=None): + super().__init__(parent=parent) + self.setShape(self.RoundedNorth) + self.setTabsClosable(True) + self.setMovable(True) + + self._actions = [] # Store action objects to keep a reference so no GC + # Allow closing tab via Ctrl+W key shortcut + _close_action = QtWidgets.QAction("Close") + _close_action.triggered.connect( + lambda: self.tabCloseRequested.emit(self.currentIndex())) + _close_action.setShortcut(QtGui.QKeySequence("Ctrl+W")) + self.addAction(_close_action) + self._actions.append(_close_action) + + def contextMenuEvent(self, event: QContextMenuEvent, *args, **kwargs): + tab = self.tabAt(event.pos()) + + menu = QtWidgets.QMenu() + menu.setTitle('Tab: ') + kill_action = QtWidgets.QAction("Kill") + kill_action.triggered.connect(lambda: self.tabCloseRequested.emit(tab)) + + menu.addAction(kill_action) + + menu.exec_(event.globalPos()) + event.accept() + + +class MainWorkspace(QtWidgets.QTabWidget): + """Custom QTabWidget promoted in main_window.ui supporting a custom + TabBar which enables the attachment of custom event actions e.g. right + click context-menus for the tab bar buttons.""" + def __init__(self, parent=None): + super().__init__(parent=parent) + self.setTabBar(_WorkspaceTabBar()) diff --git a/dgp/gui/workspaces/BaseTab.py b/dgp/gui/workspaces/BaseTab.py new file mode 100644 index 0000000..766dfab --- /dev/null +++ b/dgp/gui/workspaces/BaseTab.py @@ -0,0 +1,48 @@ +# coding: utf-8 + +from PyQt5.QtWidgets import QWidget + +import dgp.lib.types as types +from dgp.lib.project import Flight +from dgp.lib.etc import gen_uuid + + +class BaseTab(QWidget): + """Base Workspace Tab Widget - Subclass to specialize function""" + def __init__(self, label: str, flight: Flight, parent=None, **kwargs): + super().__init__(parent, **kwargs) + self.label = label + self._flight = flight + self._uid = gen_uuid('ww') + self._plot = None + self._model = None + + def widget(self): + return None + + @property + def model(self): + return self._model + + @model.setter + def model(self, value): + self._model = value + + @property + def flight(self) -> Flight: + return self._flight + + @property + def plot(self): + return self._plot + + @plot.setter + def plot(self, value): + self._plot = value + + def data_modified(self, action: str, dsrc: types.DataSource): + pass + + @property + def uid(self): + return self._uid diff --git a/dgp/gui/workspaces/LineTab.py b/dgp/gui/workspaces/LineTab.py new file mode 100644 index 0000000..70a1979 --- /dev/null +++ b/dgp/gui/workspaces/LineTab.py @@ -0,0 +1,20 @@ +# coding: utf-8 + +from PyQt5.QtWidgets import QGridLayout + +from ..plotting.plotters import TransformPlot +from . import BaseTab + + +class LineProcessTab(BaseTab): + """Thoughts: This tab can be created and opened when data is connected to + the Transform tab output node. Or simply when a button is clicked in the + Transform tab interface.""" + _name = "Line Processing" + + def __init__(self, label, flight): + super().__init__(label, flight) + self.setLayout(QGridLayout()) + plot_widget = TransformPlot(rows=2, cols=4, sharex=True, + sharey=True, grid=True) + self.layout().addWidget(plot_widget.widget, 0, 0) diff --git a/dgp/gui/workspaces/MapTab.py b/dgp/gui/workspaces/MapTab.py new file mode 100644 index 0000000..bb0e1f8 --- /dev/null +++ b/dgp/gui/workspaces/MapTab.py @@ -0,0 +1,7 @@ +# coding: utf-8 + +from . import BaseTab + + +class MapTab(BaseTab): + pass diff --git a/dgp/gui/workspaces/PlotTab.py b/dgp/gui/workspaces/PlotTab.py new file mode 100644 index 0000000..a8e9ee9 --- /dev/null +++ b/dgp/gui/workspaces/PlotTab.py @@ -0,0 +1,142 @@ +# coding: utf-8 + +import logging + +from PyQt5.QtCore import Qt +from PyQt5.QtWidgets import QVBoxLayout, QHBoxLayout +import PyQt5.QtWidgets as QtWidgets + +from . import BaseTab, Flight +import dgp.gui.models as models +import dgp.lib.types as types +from dgp.gui.dialogs import ChannelSelectionDialog +from dgp.gui.plotting.plotters import LineGrabPlot, LineUpdate, PqtLineSelectPlot + + +class PlotTab(BaseTab): + """Sub-tab displayed within Flight tab interface. Displays canvas for + plotting data series.""" + _name = "Line Selection" + defaults = {'gravity': 0, 'long': 1, 'cross': 1} + + def __init__(self, label: str, flight: Flight, axes: int, + plot_default=True, **kwargs): + super().__init__(label, flight, **kwargs) + self.log = logging.getLogger('PlotTab') + self._ctrl_widget = None + self._axes_count = axes + self._setup_ui() + self._init_model(plot_default) + + def _setup_ui(self): + vlayout = QVBoxLayout() + top_button_hlayout = QHBoxLayout() + self._select_channels = QtWidgets.QPushButton("Select Channels") + self._select_channels.clicked.connect(self._show_select_dialog) + top_button_hlayout.addWidget(self._select_channels, + alignment=Qt.AlignLeft) + + self._mode_label = QtWidgets.QLabel('') + # top_button_hlayout.addSpacing(20) + top_button_hlayout.addStretch(2) + top_button_hlayout.addWidget(self._mode_label) + top_button_hlayout.addStretch(2) + # top_button_hlayout.addSpacing(20) + self._toggle_mode = QtWidgets.QPushButton("Toggle Line Selection Mode") + self._toggle_mode.setCheckable(True) + self._toggle_mode.toggled.connect(self._toggle_selection) + top_button_hlayout.addWidget(self._toggle_mode, + alignment=Qt.AlignRight) + vlayout.addLayout(top_button_hlayout) + + # self.plot = LineGrabPlot(self.flight, self._axes_count) + self.plot = PqtLineSelectPlot(flight=self.flight, rows=3) + for line in self.flight.lines: + self.plot.add_patch(line.start, line.stop, line.uid, line.label) + self.plot.line_changed.connect(self._on_modified_line) + + vlayout.addWidget(self.plot.widget) + # vlayout.addWidget(self.plot.get_toolbar(), alignment=Qt.AlignBottom) + self.setLayout(vlayout) + + def _init_model(self, default_state=False): + channels = self.flight.channels + plot_model = models.ChannelListModel(channels, len(self.plot)) + plot_model.plotOverflow.connect(self._too_many_children) + plot_model.channelChanged.connect(self._on_channel_changed) + self.model = plot_model + + if default_state: + self.set_defaults(channels) + + def _toggle_selection(self, state: bool): + self.plot.selection_mode = state + if state: + # self._toggle_mode.setText("Exit Line Selection Mode") + self._mode_label.setText("

Line Selection Active

") + else: + # self._toggle_mode.setText("Enter Line Selection Mode") + self._mode_label.setText("") + + def set_defaults(self, channels): + for name, plot in self.defaults.items(): + for channel in channels: + if channel.field == name.lower(): + self.model.move_channel(channel.uid, plot) + + def _show_select_dialog(self): + dlg = ChannelSelectionDialog(parent=self) + if self.model is not None: + dlg.set_model(self.model) + dlg.show() + + def data_modified(self, action: str, dsrc: types.DataSource): + if action.lower() == 'add': + self.log.info("Adding channels to model.") + n_channels = dsrc.get_channels() + self.model.add_channels(*n_channels) + self.set_defaults(n_channels) + elif action.lower() == 'remove': + self.log.info("Removing channels from model.") + # Re-initialize model - source must be removed from flight first + self._init_model() + else: + return + + def _on_modified_line(self, info: LineUpdate): + if info.uid in [x.uid for x in self.flight.lines]: + if info.action == 'modify': + line = self.flight.get_line(info.uid) + line.start = info.start + line.stop = info.stop + line.label = info.label + self.log.debug("Modified line: start={start}, stop={stop}," + " label={label}" + .format(start=info.start, stop=info.stop, + label=info.label)) + elif info.action == 'remove': + self.flight.remove_line(info.uid) + self.log.debug("Removed line: start={start}, " + "stop={stop}, label={label}" + .format(start=info.start, stop=info.stop, + label=info.label)) + else: + line = types.FlightLine(info.start, info.stop, uid=info.uid) + self.flight.add_line(line) + self.log.debug("Added line to flight {flt}: start={start}, " + "stop={stop}, label={label}, uid={uid}" + .format(flt=self.flight.name, start=info.start, + stop=info.stop, label=info.label, + uid=line.uid)) + + def _on_channel_changed(self, new: int, channel: types.DataChannel): + self.plot.remove_series(channel.series()) + if new != -1: + try: + self.plot.add_series(channel.series(), new) + except: + self.log.exception("Error adding series to plot") + self.model.update() + + def _too_many_children(self, uid): + self.log.warning("Too many children for plot: {}".format(uid)) diff --git a/dgp/gui/workspaces/TransformTab.py b/dgp/gui/workspaces/TransformTab.py new file mode 100644 index 0000000..da3600c --- /dev/null +++ b/dgp/gui/workspaces/TransformTab.py @@ -0,0 +1,124 @@ +# coding: utf-8 + +from PyQt5.Qt import Qt +from PyQt5.QtWidgets import QGridLayout +from pyqtgraph.flowchart import Flowchart + +from dgp.lib.transform import LIBRARY +from dgp.lib.types import DataSource +from dgp.gui.plotting.plotters import TransformPlot +from . import BaseTab, Flight, DataTypes + + +class TransformTab(BaseTab): + _name = "Transform" + + def __init__(self, label: str, flight: Flight): + super().__init__(label, flight) + self._layout = QGridLayout() + self.setLayout(self._layout) + + self.fc = None + self.plots = [] + self._nodes = {} + self._init_flowchart() + self.demo_graph() + + def _init_flowchart(self): + fc_terminals = {"Gravity": dict(io='in'), + "Trajectory": dict(io='in'), + "Output": dict(io='out')} + fc = Flowchart(library=LIBRARY, terminals=fc_terminals) + fc.outputNode.graphicsItem().setPos(650, 0) + fc_ctrl_widget = fc.widget() + chart_window = fc_ctrl_widget.cwWin + # Force the Flowchart pop-out window to close when the main app exits + chart_window.setAttribute(Qt.WA_QuitOnClose, False) + + fc_layout = fc_ctrl_widget.ui.gridLayout + fc_layout.removeWidget(fc_ctrl_widget.ui.reloadBtn) + fc_ctrl_widget.ui.reloadBtn.setEnabled(False) + fc_ctrl_widget.ui.reloadBtn.hide() + + self._layout.addWidget(fc_ctrl_widget, 0, 0, 2, 1) + + plot_mgr = TransformPlot(rows=2) + self._layout.addWidget(plot_mgr.widget, 0, 1) + plot_node = fc.createNode('PGPlotNode', pos=(650, -150)) + plot_node.setPlot(plot_mgr.plots[0]) + + plot_node2 = fc.createNode('PGPlotNode', pos=(650, 150)) + plot_node2.setPlot(plot_mgr.plots[1]) + + self.plots.append(plot_node) + self.plots.append(plot_node2) + + self.fc = fc + grav = self.flight.get_source(DataTypes.GRAVITY) + gps = self.flight.get_source(DataTypes.TRAJECTORY) + if grav is not None: + fc.setInput(Gravity=grav.load()) + + if gps is not None: + fc.setInput(Trajectory=gps.load()) + + def populate_flowchart(self): + """Populate the flowchart/Transform interface with a default + 'example'/base network of Nodes dependent on available data.""" + if self.fc is None: + return + else: + fc = self.fc + grav = self.flight.get_source(DataTypes.GRAVITY) + gps = self.flight.get_source(DataTypes.TRAJECTORY) + if grav is not None: + fc.setInput(Gravity=grav.load()) + # self.line_chart.setInput(Gravity1=grav.load()) + filt_node = fc.createNode('FIRLowpassFilter', pos=(150, 150)) + fc.connectTerminals(fc['Gravity'], filt_node['data_in']) + fc.connectTerminals(filt_node['data_out'], self.plots[0]['In']) + + if gps is not None: + fc.setInput(Trajectory=gps.load()) + # self.line_chart.setInput(Trajectory1=gps.load()) + eotvos = fc.createNode('Eotvos', pos=(0, 0)) + fc.connectTerminals(fc['Trajectory'], eotvos['data_in']) + fc.connectTerminals(eotvos['data_out'], self.plots[0]['In']) + + def demo_graph(self): + eotvos = self.fc.createNode('Eotvos', pos=(0, 0)) + comp_delay = self.fc.createNode('ComputeDelay', pos=(150, 0)) + comp_delay.bypass(True) + shift = self.fc.createNode('ShiftFrame', pos=(300, -125)) + add_ser = self.fc.createNode('AddSeries', pos=(300, 125)) + fir_0 = self.fc.createNode('FIRLowpassFilter', pos=(0, -150)) + fir_1 = self.fc.createNode('FIRLowpassFilter', pos=(300, 0)) + free_air = self.fc.createNode('FreeAirCorrection', pos=(0, 200)) + lat_corr = self.fc.createNode('LatitudeCorrection', pos=(150, 200)) + + # Gravity Connections + self.fc.connectTerminals(self.fc['Gravity'], shift['frame']) + self.fc.connectTerminals(self.fc['Gravity'], fir_0['data_in']) + self.fc.connectTerminals(fir_0['data_out'], comp_delay['s1']) + self.fc.connectTerminals(fir_0['data_out'], self.plots[0]['In']) + + # Trajectory Connections + self.fc.connectTerminals(self.fc['Trajectory'], eotvos['data_in']) + self.fc.connectTerminals(self.fc['Trajectory'], free_air['data_in']) + self.fc.connectTerminals(self.fc['Trajectory'], lat_corr['data_in']) + self.fc.connectTerminals(eotvos['data_out'], comp_delay['s2']) + self.fc.connectTerminals(eotvos['data_out'], add_ser['A']) + self.fc.connectTerminals(comp_delay['data_out'], shift['delay']) + self.fc.connectTerminals(shift['data_out'], fir_1['data_in']) + + self.fc.connectTerminals(fir_1['data_out'], add_ser['B']) + self.fc.connectTerminals(add_ser['data_out'], self.plots[1]['In']) + + def data_modified(self, action: str, dsrc: DataSource): + """Slot: Called when a DataSource has been added/removed from the + Flight this tab/workspace is associated with.""" + if action.lower() == 'add': + if dsrc.dtype == DataTypes.TRAJECTORY: + self.fc.setInput(Trajectory=dsrc.load()) + elif dsrc.dtype == DataTypes.GRAVITY: + self.fc.setInput(Gravity=dsrc.load()) diff --git a/dgp/gui/workspaces/__init__.py b/dgp/gui/workspaces/__init__.py new file mode 100644 index 0000000..a6dcb9c --- /dev/null +++ b/dgp/gui/workspaces/__init__.py @@ -0,0 +1,23 @@ +# coding: utf-8 + +from importlib import import_module + +from dgp.lib.project import Flight +from dgp.lib.enums import DataTypes + +from .BaseTab import BaseTab +from .LineTab import LineProcessTab +from .PlotTab import PlotTab +from .TransformTab import TransformTab + +__all__ = ['BaseTab', 'LineProcessTab', 'PlotTab', 'TransformTab'] + +_modules = [] +for name in ['BaseTab', 'LineTab', 'MapTab', 'PlotTab']: + mod = import_module('.%s' % name, __name__) + _modules.append(mod) + +tabs = [] +for mod in _modules: + tab = [cls for cls in mod.__dict__.values() if isinstance(cls, BaseTab)] + tabs.append(tab) diff --git a/dgp/lib/transform/__init__.py b/dgp/lib/transform/__init__.py index 5c7993a..6a14749 100644 --- a/dgp/lib/transform/__init__.py +++ b/dgp/lib/transform/__init__.py @@ -1,15 +1,27 @@ # coding: utf-8 +from importlib import import_module from pyqtgraph.flowchart.NodeLibrary import NodeLibrary, isNodeClass -from pyqtgraph.flowchart.library import Display, Data -__all__ = ['derivatives', 'filters', 'gravity', 'operators', 'LIBRARY'] +__all__ = ['LIBRARY'] -from . import operators, gravity, derivatives, filters +# from . import operators, gravity, derivatives, filters, display, timeops + + +_modules = [] +for name in ['operators', 'gravity', 'derivatives', 'filters', 'display', + 'timeops']: + mod = import_module('.%s' % name, __name__) + _modules.append(mod) LIBRARY = NodeLibrary() -for mod in [operators, gravity, derivatives, filters, Display, Data]: - nodes = [getattr(mod, name) for name in dir(mod) - if isNodeClass(getattr(mod, name))] +for mod in _modules: + nodes = [attr for attr in mod.__dict__.values() if isNodeClass(attr)] for node in nodes: - LIBRARY.addNodeType(node, [(mod.__name__.split('.')[-1],)]) + # Control whether the Node is available to user in Context Menu + # TODO: Add class attr to enable/disable display on per Node basis + if hasattr(mod, '__displayed__') and not mod.__displayed__: + path = [] + else: + path = [(mod.__name__.split('.')[-1].capitalize(),)] + LIBRARY.addNodeType(node, path) diff --git a/dgp/lib/transform/display.py b/dgp/lib/transform/display.py index 0061ac3..73bb532 100644 --- a/dgp/lib/transform/display.py +++ b/dgp/lib/transform/display.py @@ -1,34 +1,108 @@ # coding: utf-8 +from itertools import cycle from typing import Dict +import PyQt5.QtGui as QtGui +from pandas import Series, DataFrame, to_numeric from matplotlib.axes import Axes from pyqtgraph.flowchart import Node, Terminal +from pyqtgraph.flowchart.library.Display import PlotWidgetNode + +from ...gui.plotting.backends import SeriesPlotter """Containing display Nodes to translate between pyqtgraph Flowchart and an MPL plot""" +__displayed__ = False + class MPLPlotNode(Node): nodeName = 'MPLPlotNode' - def __init__(self, name, axes=None): + def __init__(self, name): terminals = {'In': dict(io='in', multi=True)} super().__init__(name=name, terminals=terminals) - self.plot = axes + self.plot = None + self.canvas = None + + def set_plot(self, plot: Axes, canvas=None): + self.plot = plot + self.canvas = canvas def disconnected(self, localTerm, remoteTerm): """Called when connection is removed""" + print("local/remote term type:") + print(type(localTerm)) + print(type(remoteTerm)) if localTerm is self['In']: pass def process(self, In: Dict, display=True) -> None: if display and self.plot is not None: - for name, val in In.items(): - print("Plotter has:") - print("Name: ", name, "\nValue: ", val) - if val is None: + # term is the Terminal from which the data originates + for term, series in In.items(): # type: Terminal, Series + if series is None: + continue + + if not isinstance(series, Series): + print("Incompatible data input") + continue + + self.plot.plot(series.index, series.values) + if self.canvas is not None: + self.canvas.draw() + + +class PGPlotNode(Node): + nodeName = 'PGPlotNode' + + def __init__(self, name): + super().__init__(name, terminals={'In': dict(io='in', multi=True)}) + self.color_cycle = cycle([dict(color=(255, 193, 9)), + dict(color=(232, 102, 12)), + dict(color=(183, 12, 232))]) + self.plot = None # type: SeriesPlotter + self.items = {} # SourceTerm: PlotItem + + def setPlot(self, plot): + self.plot = plot + + def disconnected(self, localTerm, remoteTerm): + if localTerm is self['In'] and remoteTerm in self.items: + self.plot.removeItem(self.items[remoteTerm]) + del self.items[remoteTerm] + + def process(self, In, display=True): + if display and self.plot is not None: + items = set() + # Add all new input items to selected plot + for name, series in In.items(): + if series is None: continue + # TODO: Add UI Combobox to select channel if input is a DF? + # But what about multiple inputs? + assert isinstance(series, Series) + + uid = id(series) + if uid in self.items and self.items[uid].scene() is self.plot.scene(): + # Item is already added to the correct scene + items.add(uid) + else: + item = self.plot.add_series(series) + self.items[uid] = item + items.add(uid) + + # Remove any left-over items that did not appear in the input + for uid in list(self.items.keys()): + if uid not in items: + self.plot.remove_series(uid) + del self.items[uid] + + def ctrlWidget(self): + return None + def updateUi(self): + pass diff --git a/dgp/lib/transform/filters.py b/dgp/lib/transform/filters.py index d371e7d..b91658d 100644 --- a/dgp/lib/transform/filters.py +++ b/dgp/lib/transform/filters.py @@ -41,7 +41,8 @@ def process(self, data_in, display=True): taps = signal.firwin(n, wn, window='blackman', nyq=nyq) filtered_data = signal.filtfilt(taps, 1.0, data_in, padtype='even', padlen=80) - return {'data_out': pd.Series(filtered_data, index=data_in.index)} + return {'data_out': pd.Series(filtered_data, index=data_in.index, + name=channel)} def updateList(self, data): # TODO: Work on better update algo diff --git a/examples/plot2_prototype.py b/examples/plot2_prototype.py index 4bf9ee7..dea6cd2 100644 --- a/examples/plot2_prototype.py +++ b/examples/plot2_prototype.py @@ -16,7 +16,7 @@ os.chdir('..') import dgp.lib.project as project -from dgp.gui.plotter2 import FlightLinePlot +from dgp.gui.plotting.plotter2 import FlightLinePlot class MockDataChannel: diff --git a/examples/plot_example.py b/examples/plot_example.py index 0f49baf..0bcc716 100644 --- a/examples/plot_example.py +++ b/examples/plot_example.py @@ -14,7 +14,7 @@ os.chdir('..') import dgp.lib.project as project -import dgp.gui.plotter as plotter +import dgp.gui.plotting.plotter as plotter class MockDataChannel: diff --git a/tests/test_plotters.py b/tests/test_plotters.py index edae73f..9ea7574 100644 --- a/tests/test_plotters.py +++ b/tests/test_plotters.py @@ -1,20 +1,16 @@ # coding: utf-8 -import pytest import unittest from pathlib import Path -from datetime import datetime -from matplotlib.dates import num2date, date2num +from matplotlib.dates import date2num from matplotlib.lines import Line2D -from matplotlib.axes import Axes -from .context import dgp from dgp.lib.types import DataSource, DataChannel from dgp.lib.gravity_ingestor import read_at1a from dgp.lib.enums import DataTypes -from dgp.gui.mplutils import StackedAxesManager, _pad, COLOR_CYCLE -from dgp.gui.plotter import BasePlottingCanvas +from dgp.gui.plotting.mplutils import StackedAxesManager, _pad, COLOR_CYCLE +from dgp.gui.plotting.plotters import BasePlottingCanvas class MockDataSource(DataSource): From 9f255df7fc848d8ee5abb957543ddae0e68a0e93 Mon Sep 17 00:00:00 2001 From: cbertinato Date: Tue, 6 Feb 2018 16:06:59 -0500 Subject: [PATCH 060/236] ENH: Added functionality to align and crop gravity and trajectory frames (#64) Add Override classes for line selection click handling. Add LinearFlightRegion subclass of PyQtGraphs LinearRegionItem which is used to replicate the old flight-line selection behavior allowing users to click and drag/resize rectangular areas on the plot. Integrated this into plotters.py to create new LFR's on click when in line-selection mode. TODO: Figure out how/where the best way to place labels on the regions is. CLN: Remove deprecated transform logic from Tab. Preparing to merge into develop to continue development with new graph code - removing dependence on PyQtGraph for the flowchart DAG. Old graph logic and transform functions still remain, will merge changes over after this branch is merged into develop. Refactoring/Cleanup in gui/plotting interfaces. Cleaned up some parts of the PyQtGraph backend and added documentation to various methods. Marked some old MPL interfaces as obsolete for later consideration (deletion?) Fix test failing due to dependency refactoring. Update travis config to reflect new build_uic.py location. Also moved build_uic.py utility script out of build directory, as this directory is used by setuptools as a build location. --- .gitignore | 2 + .travis.yml | 2 +- dgp/gui/main.py | 37 ++++- dgp/gui/plotting/backends.py | 33 +++-- dgp/gui/plotting/flightregion.py | 43 +++++- dgp/gui/plotting/plotters.py | 158 +++++++++------------- dgp/gui/workspaces/TransformTab.py | 107 +-------------- dgp/lib/etc.py | 124 +++++++++++++++++ dgp/lib/gravity_ingestor.py | 10 +- dgp/lib/project.py | 16 +++ dgp/lib/trajectory_ingestor.py | 3 + dgp/lib/transform/display.py | 4 +- examples/pyqtgraph_line_selection_plot.py | 96 +++++++++++++ tests/test_etc.py | 136 +++++++++++++++++++ tests/test_graphs.py | 1 - tests/test_gravity_ingestor.py | 8 +- tests/test_plotters.py | 4 +- {build => utils}/build_uic.py | 0 18 files changed, 558 insertions(+), 226 deletions(-) create mode 100644 examples/pyqtgraph_line_selection_plot.py create mode 100644 tests/test_etc.py rename {build => utils}/build_uic.py (100%) diff --git a/.gitignore b/.gitignore index 631d64c..17dc5cf 100644 --- a/.gitignore +++ b/.gitignore @@ -18,3 +18,5 @@ examples/local* tests/sample_data/eotvos_long_result.csv tests/sample_data/eotvos_long_input.txt dgp/gui/ui/*.py +build/ +dist/ diff --git a/.travis.yml b/.travis.yml index 3024b05..226d3b6 100644 --- a/.travis.yml +++ b/.travis.yml @@ -10,7 +10,7 @@ before_script: - "export DISPLAY=:99.0" - "sh -e /etc/init.d/xvfb start" - sleep 3 - - python build/build_uic.py dgp/gui/ui + - python utils/build_uic.py dgp/gui/ui script: coverage run --source=dgp -m unittest discover notifications: diff --git a/dgp/gui/main.py b/dgp/gui/main.py index 0cee22a..bee7832 100644 --- a/dgp/gui/main.py +++ b/dgp/gui/main.py @@ -1,4 +1,4 @@ -# coding: utf-8 +# -*- coding: utf-8 -*- import os import pathlib @@ -23,6 +23,9 @@ AdvancedImportDialog) from dgp.gui.workspace import FlightTab from dgp.gui.ui.main_window import Ui_MainWindow +from dgp.lib.etc import align_frames +from dgp.lib.trajectory_ingestor import TRAJECTORY_INTERP_FIELDS +from dgp.lib.gravity_ingestor import DGS_AT1A_INTERP_FIELDS def autosave(method): @@ -299,8 +302,7 @@ def show_progress_status(self, start, stop, label=None) -> QtWidgets.QProgressBa sb.addWidget(progress) return progress - @autosave - def add_data(self, data, dtype, flight, path): + def _add_data(self, data, dtype, flight, path): uid = dm.get_manager().save_data(dm.HDF5, data) if uid is None: self.log.error("Error occured writing DataFrame to HDF5 store.") @@ -310,6 +312,11 @@ def add_data(self, data, dtype, flight, path): ds = types.DataSource(uid, path, cols, dtype, x0=data.index.min(), x1=data.index.max()) flight.register_data(ds) + return ds + + @autosave + def add_data(self, data, dtype, flight, path): + ds = self._add_data(data, dtype, flight, path) if flight.uid not in self._open_tabs: # If flight is not opened we don't need to update the plot return @@ -342,6 +349,30 @@ def load_file(self, dtype, flight, **params): def _complete(data): self.add_data(data, dtype, flight, params.get('path', None)) + # align and crop gravity and trajectory frames if both are present + if flight.has_trajectory and flight.has_gravity: + # get datasource objects + gravity = flight.get_source(enums.DataTypes.GRAVITY) + trajectory = flight.get_source(enums.DataTypes.TRAJECTORY) + + # align and crop the gravity and trajectory frames + fields = DGS_AT1A_INTERP_FIELDS | TRAJECTORY_INTERP_FIELDS + new_gravity, new_trajectory = align_frames(gravity.load(), + trajectory.load(), + interp_only=fields) + + # replace datasource objects + ds_attr = {'path': gravity.filename, 'dtype': gravity.dtype} + flight.remove_data(gravity) + self._add_data(new_gravity, ds_attr['dtype'], flight, + ds_attr['path']) + + ds_attr = {'path': trajectory.filename, + 'dtype': trajectory.dtype} + flight.remove_data(trajectory) + self._add_data(new_trajectory, ds_attr['dtype'], flight, + ds_attr['path']) + def _result(result): err, exc = result prog.close() diff --git a/dgp/gui/plotting/backends.py b/dgp/gui/plotting/backends.py index 0a2e4ec..8f85e23 100644 --- a/dgp/gui/plotting/backends.py +++ b/dgp/gui/plotting/backends.py @@ -1,9 +1,9 @@ -# coding: utf-8 +# -*- coding: utf-8 -*- from abc import ABCMeta, abstractmethod from functools import partial, partialmethod from itertools import cycle -from typing import Union +from typing import Union, Generator from PyQt5.QtCore import pyqtSignal import PyQt5.QtWidgets as QtWidgets @@ -37,7 +37,7 @@ PGWidget will contain a series of PlotItem classes which likewise can be used to plot. -It remains to be seen if the Interface/ABC SeriesPlotter and its descendent +It remains to be seen if the Interface/ABC AbstractSeriesPlotter and its descendent classes PlotWidgetWrapper and MPLAxesWrapper are necessary - the intent of these classes was to wrap a PlotItem or Axes and provide a unified standard interface for plotting. However, the Stacked*Widget classes might nicely @@ -45,7 +45,7 @@ """ __all__ = ['PYQTGRAPH', 'MATPLOTLIB', 'BasePlot', 'StackedMPLWidget', 'PyQtGridPlotWidget', - 'SeriesPlotter'] + 'AbstractSeriesPlotter'] PYQTGRAPH = 'pqg' MATPLOTLIB = 'mpl' @@ -195,7 +195,7 @@ def __init__(self, rows=1, sharex=True, width=8, height=4, dpi=100, def __len__(self): return len(self._plots) - def get_plot(self, row) -> 'SeriesPlotter': + def get_plot(self, row) -> 'AbstractSeriesPlotter': return self.plots[row] def onclick(self, event: MouseEvent): @@ -266,7 +266,7 @@ def get_plot(self, row): return self._plots[row] -class SeriesPlotter(metaclass=ABCMeta): +class AbstractSeriesPlotter(metaclass=ABCMeta): """ Abstract Base Class used to define an interface for different plotter wrappers. @@ -279,12 +279,16 @@ class SeriesPlotter(metaclass=ABCMeta): def __getattr__(self, item): """Passes attribute calls to underlying plotter object if no override - in SeriesPlotter implementation.""" + in AbstractSeriesPlotter implementation.""" if hasattr(self.plotter, item): attr = getattr(self.plotter, item) return attr raise AttributeError(item) + @abstractmethod + def __len__(self): + pass + @property @abstractmethod def plotter(self) -> Union[Axes, PlotWidget]: @@ -329,9 +333,8 @@ def get_ylim(self): pass -class PlotWidgetWrapper(SeriesPlotter): +class PlotWidgetWrapper(AbstractSeriesPlotter): def __init__(self, plot: PlotItem): - self._plot = plot self._lines = {} # id(Series): line self._data = {} # id(Series): series @@ -349,19 +352,16 @@ def _plotitem(self) -> PlotItem: return self._plot @property - def items(self): + def items(self) -> Generator[PlotDataItem, None, None]: for item in self._lines.values(): yield item def plot(self, x, y, *args, **kwargs): if isinstance(x, pd.Series): - - pass + self.add_series(x, *args, **kwargs) else: self._plot.plot(x, y, *args, **kwargs) - pass - def add_series(self, series: pd.Series, fmter='date', *args, **kwargs): """Take in a pandas Series, add it to the plot and retain a reference. @@ -410,7 +410,7 @@ def get_xlim(self): return self._plotitem.vb.viewRange()[0] -class MPLAxesWrapper(SeriesPlotter): +class MPLAxesWrapper(AbstractSeriesPlotter): def __init__(self, plot, canvas): assert isinstance(plot, Axes) @@ -418,6 +418,9 @@ def __init__(self, plot, canvas): self._lines = {} # id(Series): Line2D self._canvas = canvas # type: FigureCanvas + def __len__(self): + return len(self._lines) + @property def plotter(self) -> Axes: return self._plot diff --git a/dgp/gui/plotting/flightregion.py b/dgp/gui/plotting/flightregion.py index 5b10c3e..9cac30c 100644 --- a/dgp/gui/plotting/flightregion.py +++ b/dgp/gui/plotting/flightregion.py @@ -1,24 +1,35 @@ # coding: utf-8 +import PyQt5.QtWidgets as QtWidgets import PyQt5.QtCore as QtCore from PyQt5.QtWidgets import QMenu, QAction from pyqtgraph.graphicsItems.LinearRegionItem import LinearRegionItem +from pyqtgraph.graphicsItems.TextItem import TextItem class LinearFlightRegion(LinearRegionItem): """Custom LinearRegionItem class to provide override methods on various click events.""" - def __init__(self, values=(0, 1), - orientation=LinearRegionItem.Vertical, brush=None, - movable=True, bounds=None, parent=None): + def __init__(self, values=(0, 1), orientation=None, brush=None, + movable=True, bounds=None, parent=None, label=None): super().__init__(values=values, orientation=orientation, brush=brush, movable=movable, bounds=bounds) self.parent = parent + self._grpid = None + self._label_text = label or '' + self.label = TextItem(text=self._label_text, color=(0, 0, 0), + anchor=(0, 0)) + # self.label.setPos() self._menu = QMenu() self._menu.addAction(QAction('Remove', self, triggered=self._remove)) + self._menu.addAction(QAction('Set Label', self, + triggered=self._getlabel)) + self.sigRegionChanged.connect(self._move_label) def mouseClickEvent(self, ev): + if not self.parent.selection_mode: + return if ev.button() == QtCore.Qt.RightButton and not self.moving: ev.accept() pos = ev.screenPos().toPoint() @@ -28,10 +39,36 @@ def mouseClickEvent(self, ev): else: return super().mouseClickEvent(ev) + def _move_label(self, lfr): + x0, x1 = self.getRegion() + + self.label.setPos(x0, 0) + def _remove(self): try: self.parent.remove(self) except AttributeError: return + def _getlabel(self): + text, result = QtWidgets.QInputDialog.getText(None, + "Enter Label", + "Line Label:", + text=self._label_text) + if not result: + return + try: + self.parent.set_label(self, str(text).strip()) + except AttributeError: + return + + def set_label(self, text): + self.label.setText(text) + + @property + def group(self): + return self._grpid + @group.setter + def group(self, value): + self._grpid = value diff --git a/dgp/gui/plotting/plotters.py b/dgp/gui/plotting/plotters.py index 2939c5e..0bf6e55 100644 --- a/dgp/gui/plotting/plotters.py +++ b/dgp/gui/plotting/plotters.py @@ -1,4 +1,4 @@ -# coding: utf-8 +# -*- coding: utf-8 -*- """ Definitions for task specific plot interfaces. @@ -33,7 +33,7 @@ from dgp.lib.types import DataChannel, LineUpdate from dgp.lib.etc import gen_uuid from .mplutils import * -from .backends import BasePlot, PYQTGRAPH, MATPLOTLIB, SeriesPlotter +from .backends import BasePlot, PYQTGRAPH, MATPLOTLIB, AbstractSeriesPlotter from .flightregion import LinearFlightRegion import pyqtgraph as pg @@ -42,6 +42,15 @@ _log = logging.getLogger(__name__) +""" +TODO: Many of the classes here are not used, in favor of the PyQtGraph line selection interface. +Consider whether to remove the obsolete code, or keep it around while the new plot interface +matures. There are still some quirks and features missing from the PyQtGraph implementation +that will need to be worked out and properly tested. + +""" + + class TransformPlot: """Plot interface used for displaying transformation results. May need to display data plotted against time series or scalar series. @@ -53,14 +62,15 @@ def __init__(self, rows=2, cols=1, sharex=True, sharey=False, grid=True, background='w', parent=parent) @property - def plots(self) -> List[SeriesPlotter]: + def plots(self) -> List[AbstractSeriesPlotter]: return self.widget.plots class PqtLineSelectPlot(QtCore.QObject): """New prototype Flight Line selection plot using Pyqtgraph as the backend. - Much work to be done here still + + This class supports flight-line selection using PyQtGraph LinearRegionItems """ line_changed = pyqtSignal(LineUpdate) @@ -72,15 +82,14 @@ def __init__(self, flight, rows=3, parent=None): self._flight = flight self.widget.add_onclick_handler(self.onclick) self._lri_id = count(start=1) - self._selections = {} - self._group_map = {} - self._updating = False + self._selections = {} # Flight-line 'selection' patches: grpid: group[LinearFlightRegion's] + self._updating = False # Class flag for locking during update # Rate-limit line updates using a timer. - self._line_update = None - self._upd_timer = QtCore.QTimer(self) - self._upd_timer.setInterval(50) - self._upd_timer.timeout.connect(self._update_done) + self._line_update = None # type: LinearFlightRegion + self._update_timer = QtCore.QTimer(self) + self._update_timer.setInterval(100) + self._update_timer.timeout.connect(self._update_done) self._selecting = False @@ -109,7 +118,7 @@ def add_patch(self, *args): pass @property - def plots(self) -> List[SeriesPlotter]: + def plots(self) -> List[AbstractSeriesPlotter]: return self.widget.plots def _check_proximity(self, x, span, proximity=0.03) -> bool: @@ -134,6 +143,8 @@ def _check_proximity(self, x, span, proximity=0.03) -> bool: """ prox = span * proximity for group in self._selections.values(): + if not len(group): + continue lri0 = group[0] # type: LinearRegionItem lx0, lx1 = lri0.getRegion() if lx0 - prox <= x <= lx1 + prox: @@ -172,7 +183,11 @@ def onclick(self, ev): def add_linked_selection(self, start, stop, uid=None, label=None): """ - Add a LinearFlightRegion selection across all linked x-axes at xpos + Add a LinearFlightRegion selection across all linked x-axes + With width ranging from start:stop + + Labelling for the regions is not yet implemented, due to the + difficulty of vertically positioning the text. Solution TBD """ if isinstance(start, pd.Timestamp): @@ -188,87 +203,80 @@ def add_linked_selection(self, start, stop, uid=None, label=None): for i, plot in enumerate(self.plots): lfr = LinearFlightRegion(parent=self) + lfr.group = grpid plot.addItem(lfr) + # plot.addItem(lfr.label) lfr.setRegion(patch_region) lfr.setMovable(self._selecting) lfr_group.append(lfr) lfr.sigRegionChanged.connect(self.update) - self._group_map[lfr] = grpid + # self._group_map[lfr] = grpid self._selections[grpid] = lfr_group self.line_changed.emit(update) - def remove(self, item): + def remove(self, item: LinearFlightRegion): if not isinstance(item, LinearFlightRegion): return - grpid = self._group_map.get(item, None) - if grpid is None: - return + grpid = item.group update = LineUpdate(self._flight.uid, 'remove', grpid, pd.to_datetime(1), pd.to_datetime(1), None) grp = self._selections[grpid] for i, plot in enumerate(self.plots): + plot.removeItem(grp[i].label) plot.removeItem(grp[i]) + del self._selections[grpid] self.line_changed.emit(update) - def update(self, item: LinearRegionItem): + def set_label(self, item: LinearFlightRegion, text: str): + if not isinstance(item, LinearFlightRegion): + return + group = self._selections[item.group] + for lfr in group: # type: LinearFlightRegion + lfr.set_label(text) + + x0, x1 = item.getRegion() + update = LineUpdate(self._flight.uid, 'modify', item.group, + pd.to_datetime(x0), pd.to_datetime(x1), text) + self.line_changed.emit(update) + + def update(self, item: LinearFlightRegion): """Update other LinearRegionItems in the group of 'item' to match the new region. We must set a flag here as we only want to process updates from the first source - as this update will be called during the update process because LinearRegionItem.setRegion() raises a - sigRegionChanged event.""" + sigRegionChanged event. + + A timer (_update_timer) is also used to avoid firing a line update + with ever pixel adjustment. _update_done will be called after an elapsed + time (100ms default) where there have been no calls to update(). + """ if self._updating: return - self._upd_timer.start() + self._update_timer.start() self._updating = True self._line_update = item new_region = item.getRegion() - grpid = self._group_map[item] - group = self._selections[grpid] - for select in group: # type: LinearRegionItem - if select is item: + group = self._selections[item.group] + for lri in group: # type: LinearFlightRegion + if lri is item: continue - select.setRegion(new_region) + else: + lri.setRegion(new_region) self._updating = False def _update_done(self): - self._upd_timer.stop() + self._update_timer.stop() x0, x1 = self._line_update.getRegion() - uid = self._group_map[self._line_update] - update = LineUpdate(self._flight.uid, 'modify', uid, pd.to_datetime(x0), - pd.to_datetime(x1), None) + update = LineUpdate(self._flight.uid, 'modify', self._line_update.group, + pd.to_datetime(x0), pd.to_datetime(x1), None) self.line_changed.emit(update) self._line_update = None -"""Design Requirements of FlightLinePlot: - -Use Case: -FlightLinePlot (FLP) is designed for a specific use case, where the user may -plot raw Gravity and GPS data channels on a synchronized x-axis plot in order to -select distinct 'lines' of data (where the Ship or Aircraft has turned to -another heading). - -Requirements: - - Able to display 2-4 plots displayed in a row with a linked x-axis scale. - - Each plot must have dual y-axis scales and should limit the number of lines -plotted to 1 per y-axis to allow for plotting of different channels of widely -varying amplitudes. -- User can enable a 'line selection mode' which allows the user to -graphically specify flight lines through the following functionality: - - On click, a new semi-transparent rectangle 'patch' is created across all - visible axes. If there is no patch in the area already. - - On drag of a patch, it should follow the mouse, allowing the user to - adjust its position. - - On click and drag of the edge of any patch it should resize to the extent - of the movement, allowing the user to resize the patches. - - On right-click of a patch, a context menu should be displayed allowing - user to label, or delete, or specify precise (spinbox) x/y limits of the patch - -""" class BasePlottingCanvas(FigureCanvas): @@ -321,6 +329,9 @@ class AxesGroup: for easier operations on multiple Axes at once, especially when dealing with plot Patches and Annotations. + + Backend: MATPLOTLIB + Parameters ---------- *axes : List[Axes] @@ -923,42 +934,7 @@ def _patch_center(patch) -> Tuple[int, int]: return cx, cy -class BasePlottingCanvas(FigureCanvas): - """ - BasePlottingCanvas sets up the basic Qt FigureCanvas parameters, and is - designed to be subclassed for different plot types. - Mouse events are connected to the canvas here, and the handlers should be - overriden in sub-classes to provide custom actions. - """ - def __init__(self, parent=None, width=8, height=4, dpi=100): - _log.debug("Initializing BasePlottingCanvas") - - super().__init__(Figure(figsize=(width, height), dpi=dpi, - tight_layout=True)) - - self.setParent(parent) - super().setSizePolicy(QSizePolicy.Expanding, QSizePolicy.Expanding) - super().updateGeometry() - - self.figure.canvas.mpl_connect('pick_event', self.onpick) - self.figure.canvas.mpl_connect('button_press_event', self.onclick) - self.figure.canvas.mpl_connect('button_release_event', self.onrelease) - self.figure.canvas.mpl_connect('motion_notify_event', self.onmotion) - - def onclick(self, event: MouseEvent): - pass - - def onpick(self, event: PickEvent): - print("On pick called in BasePlottingCanvas") - pass - - def onrelease(self, event: MouseEvent): - pass - - def onmotion(self, event: MouseEvent): - pass - - +# Deprecated in favor of PyQtGraph plot engine for performance class LineGrabPlot(BasePlottingCanvas, QWidget): """ LineGrabPlot implements BasePlottingCanvas and provides an onclick method to diff --git a/dgp/gui/workspaces/TransformTab.py b/dgp/gui/workspaces/TransformTab.py index da3600c..56e35be 100644 --- a/dgp/gui/workspaces/TransformTab.py +++ b/dgp/gui/workspaces/TransformTab.py @@ -1,13 +1,9 @@ -# coding: utf-8 +# -*- coding: utf-8 -*- -from PyQt5.Qt import Qt from PyQt5.QtWidgets import QGridLayout -from pyqtgraph.flowchart import Flowchart -from dgp.lib.transform import LIBRARY from dgp.lib.types import DataSource -from dgp.gui.plotting.plotters import TransformPlot -from . import BaseTab, Flight, DataTypes +from . import BaseTab, Flight class TransformTab(BaseTab): @@ -21,104 +17,11 @@ def __init__(self, label: str, flight: Flight): self.fc = None self.plots = [] self._nodes = {} - self._init_flowchart() - self.demo_graph() - - def _init_flowchart(self): - fc_terminals = {"Gravity": dict(io='in'), - "Trajectory": dict(io='in'), - "Output": dict(io='out')} - fc = Flowchart(library=LIBRARY, terminals=fc_terminals) - fc.outputNode.graphicsItem().setPos(650, 0) - fc_ctrl_widget = fc.widget() - chart_window = fc_ctrl_widget.cwWin - # Force the Flowchart pop-out window to close when the main app exits - chart_window.setAttribute(Qt.WA_QuitOnClose, False) - - fc_layout = fc_ctrl_widget.ui.gridLayout - fc_layout.removeWidget(fc_ctrl_widget.ui.reloadBtn) - fc_ctrl_widget.ui.reloadBtn.setEnabled(False) - fc_ctrl_widget.ui.reloadBtn.hide() - - self._layout.addWidget(fc_ctrl_widget, 0, 0, 2, 1) - - plot_mgr = TransformPlot(rows=2) - self._layout.addWidget(plot_mgr.widget, 0, 1) - plot_node = fc.createNode('PGPlotNode', pos=(650, -150)) - plot_node.setPlot(plot_mgr.plots[0]) - - plot_node2 = fc.createNode('PGPlotNode', pos=(650, 150)) - plot_node2.setPlot(plot_mgr.plots[1]) - - self.plots.append(plot_node) - self.plots.append(plot_node2) - - self.fc = fc - grav = self.flight.get_source(DataTypes.GRAVITY) - gps = self.flight.get_source(DataTypes.TRAJECTORY) - if grav is not None: - fc.setInput(Gravity=grav.load()) - - if gps is not None: - fc.setInput(Trajectory=gps.load()) - - def populate_flowchart(self): - """Populate the flowchart/Transform interface with a default - 'example'/base network of Nodes dependent on available data.""" - if self.fc is None: - return - else: - fc = self.fc - grav = self.flight.get_source(DataTypes.GRAVITY) - gps = self.flight.get_source(DataTypes.TRAJECTORY) - if grav is not None: - fc.setInput(Gravity=grav.load()) - # self.line_chart.setInput(Gravity1=grav.load()) - filt_node = fc.createNode('FIRLowpassFilter', pos=(150, 150)) - fc.connectTerminals(fc['Gravity'], filt_node['data_in']) - fc.connectTerminals(filt_node['data_out'], self.plots[0]['In']) - - if gps is not None: - fc.setInput(Trajectory=gps.load()) - # self.line_chart.setInput(Trajectory1=gps.load()) - eotvos = fc.createNode('Eotvos', pos=(0, 0)) - fc.connectTerminals(fc['Trajectory'], eotvos['data_in']) - fc.connectTerminals(eotvos['data_out'], self.plots[0]['In']) - - def demo_graph(self): - eotvos = self.fc.createNode('Eotvos', pos=(0, 0)) - comp_delay = self.fc.createNode('ComputeDelay', pos=(150, 0)) - comp_delay.bypass(True) - shift = self.fc.createNode('ShiftFrame', pos=(300, -125)) - add_ser = self.fc.createNode('AddSeries', pos=(300, 125)) - fir_0 = self.fc.createNode('FIRLowpassFilter', pos=(0, -150)) - fir_1 = self.fc.createNode('FIRLowpassFilter', pos=(300, 0)) - free_air = self.fc.createNode('FreeAirCorrection', pos=(0, 200)) - lat_corr = self.fc.createNode('LatitudeCorrection', pos=(150, 200)) - - # Gravity Connections - self.fc.connectTerminals(self.fc['Gravity'], shift['frame']) - self.fc.connectTerminals(self.fc['Gravity'], fir_0['data_in']) - self.fc.connectTerminals(fir_0['data_out'], comp_delay['s1']) - self.fc.connectTerminals(fir_0['data_out'], self.plots[0]['In']) - - # Trajectory Connections - self.fc.connectTerminals(self.fc['Trajectory'], eotvos['data_in']) - self.fc.connectTerminals(self.fc['Trajectory'], free_air['data_in']) - self.fc.connectTerminals(self.fc['Trajectory'], lat_corr['data_in']) - self.fc.connectTerminals(eotvos['data_out'], comp_delay['s2']) - self.fc.connectTerminals(eotvos['data_out'], add_ser['A']) - self.fc.connectTerminals(comp_delay['data_out'], shift['delay']) - self.fc.connectTerminals(shift['data_out'], fir_1['data_in']) - - self.fc.connectTerminals(fir_1['data_out'], add_ser['B']) - self.fc.connectTerminals(add_ser['data_out'], self.plots[1]['In']) def data_modified(self, action: str, dsrc: DataSource): """Slot: Called when a DataSource has been added/removed from the Flight this tab/workspace is associated with.""" if action.lower() == 'add': - if dsrc.dtype == DataTypes.TRAJECTORY: - self.fc.setInput(Trajectory=dsrc.load()) - elif dsrc.dtype == DataTypes.GRAVITY: - self.fc.setInput(Gravity=dsrc.load()) + return + elif action.lower() == 'remove': + return diff --git a/dgp/lib/etc.py b/dgp/lib/etc.py index 218192b..4730ff1 100644 --- a/dgp/lib/etc.py +++ b/dgp/lib/etc.py @@ -7,6 +7,130 @@ import numpy as np +def align_frames(frame1, frame2, align_to='left', interp_method='time', + interp_only=[], fill={}): + # TODO: Is there a more appropriate place for this function? + # TODO: Add ability to specify interpolation method per column. + # TODO: Ensure that dtypes are preserved unless interpolated. + """ + Align and crop two objects + + Parameters + ---------- + frame1: :obj:`DataFrame` or :obj:`Series + Must have a time-like index + frame1: :obj:`DataFrame` or :obj:`Series + Must have a time-like index + align_to: {'left', 'right'}, :obj:`DatetimeIndex` + Index to which data are aligned. + interp_method: {‘linear’, ‘time’, ‘index’, ‘values’, ‘nearest’, ‘zero’, + ‘slinear’, ‘quadratic’, ‘cubic’, ‘barycentric’, ‘krogh’, ‘polynomial’, + ‘spline’, ‘piecewise_polynomial’, ‘from_derivatives’, ‘pchip’, ‘akima’} + - ‘linear’: ignore the index and treat the values as equally spaced. + This is the only method supported on MultiIndexes. + - ‘time’: interpolation works on daily and higher resolution data to + interpolate given length of interval. default + - ‘index’, ‘values’: use the actual numerical values of the index + - ‘nearest’, ‘zero’, ‘slinear’, ‘quadratic’, ‘cubic’, ‘barycentric’, + ‘polynomial’ is passed to scipy.interpolate.interp1d. Both + ‘polynomial’ and ‘spline’ require that you also specify an order + (int), e.g. df.interpolate(method=’polynomial’, order=4). These + use the actual numerical values of the index. + - ‘krogh’, ‘piecewise_polynomial’, ‘spline’, ‘pchip’ and ‘akima’ are + all wrappers around the scipy interpolation methods of similar + names. These use the actual numerical values of the index. + For more information on their behavior, see the scipy + documentation and tutorial documentation + - ‘from_derivatives’ refers to BPoly.from_derivatives which replaces + ‘piecewise_polynomial’ interpolation method in scipy 0.18 + interp_only: set or list + If empty, then all columns except for those indicated in `fill` are + interpolated. Otherwise, only columns listed here are interpolated. + Any column not interpolated and not listed in `fill` is filled with + `ffill`. + fill: dict + Indicate which columns are not to be interpolated. Available fill + methods are {'bfill', 'ffill', None}, or specify a value to fill. + If a column is not present in the dictionary, then it will be + interpolated. + + Returns + ------- + (frame1, frame2) + Aligned and cropped objects + + Raises + ------ + ValueError + When frames do not overlap, and if an incorrect `align_to` argument + is given. + """ + def fill_nans(frame): + # TODO: Refactor this function to be less repetitive + if hasattr(frame, 'columns'): + for column in frame.columns: + if interp_only: + if column in interp_only: + frame[column] = frame[column].interpolate(method=interp_method) + elif column in fill.keys(): + if fill[column] in ('bfill', 'ffill'): + frame[column] = frame[column].fillna(method=fill[column]) + else: + # TODO: Validate value + frame[column] = frame[column].fillna(value=fill[column]) + else: + frame[column] = frame[column].fillna(method='ffill') + else: + if column not in fill.keys(): + frame[column] = frame[column].interpolate(method=interp_method) + else: + if fill[column] in ('bfill', 'ffill'): + frame[column] = frame[column].fillna(method=fill[column]) + else: + # TODO: Validate value + frame[column] = frame[column].fillna(value=fill[column]) + else: + frame = frame.interpolate(method=interp_method) + return frame + + if align_to not in ('left', 'right'): + raise ValueError('Invalid value for align_to parameter: {val}' + .format(val=align_to)) + + if frame1.index.min() >= frame2.index.max() \ + or frame1.index.max() <= frame2.index.min(): + raise ValueError('Frames do not overlap') + + if align_to == 'left': + new_index = frame1.index + elif align_to == 'right': + new_index = frame2.index + + left, right = frame1.align(frame2, axis=0, copy=True) + + left = fill_nans(left) + right = fill_nans(right) + + left = left.reindex(new_index).dropna() + right = right.reindex(new_index).dropna() + + # crop frames + if left.index.min() > right.index.min(): + begin = left.index.min() + else: + begin = right.index.min() + + if left.index.max() < right.index.max(): + end = left.index.max() + else: + end = right.index.max() + + left = left.loc[begin:end] + right = right.loc[begin:end] + + return left, right + + def interp_nans(y): nans = np.isnan(y) x = lambda z: z.nonzero()[0] diff --git a/dgp/lib/gravity_ingestor.py b/dgp/lib/gravity_ingestor.py index a371c71..11aa663 100644 --- a/dgp/lib/gravity_ingestor.py +++ b/dgp/lib/gravity_ingestor.py @@ -69,6 +69,10 @@ def _unpack_bits(n): return df +DGS_AT1A_INTERP_FIELDS = {'gravity', 'long_accel', 'cross_accel', 'beam', + 'temp', 'pressure', 'Etemp'} + + def read_at1a(path, columns=None, fill_with_nans=True, interp=False, skiprows=None): """ @@ -97,8 +101,9 @@ def read_at1a(path, columns=None, fill_with_nans=True, interp=False, pandas.DataFrame Gravity data indexed by datetime. """ - columns = columns or ['gravity', 'long', 'cross', 'beam', 'temp', 'status', - 'pressure', 'Etemp', 'GPSweek', 'GPSweekseconds'] + columns = columns or ['gravity', 'long_accel', 'cross_accel', 'beam', + 'temp', 'status', 'pressure', 'Etemp', 'GPSweek', + 'GPSweekseconds'] df = pd.read_csv(path, header=None, engine='c', na_filter=False, skiprows=skiprows) @@ -133,6 +138,7 @@ def read_at1a(path, columns=None, fill_with_nans=True, interp=False, index = pd.date_range(df.index[0], df.index[-1], freq=interval) df = df.reindex(index) + # TODO: Replace interp_nans with pandas interpolate if interp: numeric = df.select_dtypes(include=[np.number]) numeric = numeric.apply(interp_nans) diff --git a/dgp/lib/project.py b/dgp/lib/project.py index f3211f7..f633741 100644 --- a/dgp/lib/project.py +++ b/dgp/lib/project.py @@ -14,6 +14,8 @@ from .types import DataSource, FlightLine, TreeItem from .enums import DataTypes from . import datamanager as dm +from .enums import DataTypes + """ Dynamic Gravity Processor (DGP) :: project.py License: Apache License V2 @@ -324,6 +326,8 @@ def __init__(self, project: GravityProject, name: str, parent=self, name='Data Files')) self._line_sequence = count() + self.has_gravity = False + self.has_trajectory = False def data(self, role): if role == QtDataRoles.ToolTipRole: @@ -360,12 +364,24 @@ def register_data(self, datasrc: DataSource): self.name, datasrc.filename, datasrc.uid)) datasrc.flight = self self.get_child(self._data_uid).append_child(datasrc) + + # TODO: This check needs to be revised when considering multiple datasets per flight + if datasrc.dtype == DataTypes.GRAVITY: + self.has_gravity = True + elif datasrc.dtype == DataTypes.TRAJECTORY: + self.has_trajectory = True + # TODO: Hold off on this - breaks plot when we change source # print("Setting new Dsrc to active") # datasrc.active = True # self.update() def remove_data(self, datasrc: DataSource) -> bool: + # TODO: This check needs to be revised when considering multiple datasets per flight + if datasrc.dtype == DataTypes.GRAVITY: + self.has_gravity = False + elif datasrc.dtype == DataTypes.TRAJECTORY: + self.has_trajectory = False return self.get_child(self._data_uid).remove_child(datasrc) def add_line(self, line: FlightLine) -> int: diff --git a/dgp/lib/trajectory_ingestor.py b/dgp/lib/trajectory_ingestor.py index ad66a41..1c3856c 100644 --- a/dgp/lib/trajectory_ingestor.py +++ b/dgp/lib/trajectory_ingestor.py @@ -12,6 +12,9 @@ from .etc import interp_nans +TRAJECTORY_INTERP_FIELDS = {'lat', 'long', 'ell_ht'} + + def import_trajectory(filepath, delim_whitespace=False, interval=0, interp=False, is_utc=False, columns=None, skiprows=None, timeformat='sow'): diff --git a/dgp/lib/transform/display.py b/dgp/lib/transform/display.py index 73bb532..1d5288a 100644 --- a/dgp/lib/transform/display.py +++ b/dgp/lib/transform/display.py @@ -9,7 +9,7 @@ from pyqtgraph.flowchart import Node, Terminal from pyqtgraph.flowchart.library.Display import PlotWidgetNode -from ...gui.plotting.backends import SeriesPlotter +from ...gui.plotting.backends import AbstractSeriesPlotter """Containing display Nodes to translate between pyqtgraph Flowchart and an MPL plot""" @@ -62,7 +62,7 @@ def __init__(self, name): self.color_cycle = cycle([dict(color=(255, 193, 9)), dict(color=(232, 102, 12)), dict(color=(183, 12, 232))]) - self.plot = None # type: SeriesPlotter + self.plot = None # type: AbstractSeriesPlotter self.items = {} # SourceTerm: PlotItem def setPlot(self, plot): diff --git a/examples/pyqtgraph_line_selection_plot.py b/examples/pyqtgraph_line_selection_plot.py new file mode 100644 index 0000000..bef00da --- /dev/null +++ b/examples/pyqtgraph_line_selection_plot.py @@ -0,0 +1,96 @@ +import os +import sys +import uuid +import logging +import datetime +import traceback + +from PyQt5 import QtCore +import PyQt5.QtWidgets as QtWidgets +import PyQt5.Qt as Qt +import numpy as np +from pandas import Series, DatetimeIndex +from matplotlib.axes import Axes +from matplotlib.patches import Rectangle +from matplotlib.dates import date2num + +os.chdir('..') +import dgp.lib.project as project +from dgp.gui.plotting.plotters import PqtLineSelectPlot as LineSelectPlot +from pyqtgraph.graphicsItems.LinearRegionItem import LinearRegionItem + + +class MockDataChannel: + def __init__(self, series, label): + self._series = series + self.label = label + self.uid = uuid.uuid4().__str__() + + def series(self): + return self._series + + def plot(self, *args): + pass + + +class PlotExample(QtWidgets.QMainWindow): + def __init__(self): + super().__init__() + self.setWindowTitle('Plotter Testing') + self.setBaseSize(Qt.QSize(600, 600)) + self._flight = project.Flight(None, 'test') + + self._plot = LineSelectPlot(flight=self._flight, rows=3) + self._plot.line_changed.connect(lambda upd: print(upd)) + # self.plot.figure.canvas.mpl_connect('pick_event', lambda x: print( + # "Pick event handled")) + # self.plot.mgr = StackedAxesManager(self.plot.figure, rows=2) + # self._toolbar = NavToolbar(self.plot, parent=self) + # self._toolbar.actions()[0] = QtWidgets.QAction("Reset View") + # self._toolbar.actions()[0].triggered.connect(lambda x: print( + # "Action 0 triggered")) + + self.setCentralWidget(self._plot.widget) + + self.show() + + idx = DatetimeIndex(freq='5S', start=datetime.datetime.now(), + periods=1000) + ser = Series([np.sin(x)*3 for x in np.arange(0, 100, 0.1)], index=idx) + p0 = self._plot.plots[0] + p0.add_series(ser) + print("new xlim: ", p0.get_xlim()) + x0, x1 = p0.get_xlim() + xrng = x1 - x0 + tenpct = xrng * .1 + + # lri = LinearRegionItem() + # lri.sigRegionChanged.connect(lambda rng: print("LRI Range changed to: ", + # rng.getRegion())) + # p0.addItem(lri) + # lri.setRegion([x0, x0+tenpct]) + + +def excepthook(type_, value, traceback_): + """This allows IDE to properly display unhandled exceptions which are + otherwise silently ignored as the application is terminated. + Override default excepthook with + >>> sys.excepthook = excepthook + + See: http://pyqt.sourceforge.net/Docs/PyQt5/incompatibilities.html + """ + traceback.print_exception(type_, value, traceback_) + QtCore.qFatal('') + + +if __name__ == '__main__': + sys.excepthook = excepthook + app = QtWidgets.QApplication(sys.argv) + _log = logging.getLogger() + _log.addHandler(logging.StreamHandler(sys.stdout)) + _log.setLevel(logging.DEBUG) + + window = PlotExample() + # window.plot_sin() + sys.exit(app.exec_()) + diff --git a/tests/test_etc.py b/tests/test_etc.py new file mode 100644 index 0000000..a27de8c --- /dev/null +++ b/tests/test_etc.py @@ -0,0 +1,136 @@ +from .context import dgp +import unittest +import numpy as np +import pandas as pd + +from dgp.lib.etc import align_frames + + +class TestAlignOps(unittest.TestCase): + # TODO: Test with another DatetimeIndex + # TODO: Test with other interpolation methods + # TODO: Tests for interp_only + + def test_align_args(self): + frame1 = pd.Series(np.arange(10)) + index1 = pd.Timestamp('2018-01-29 15:19:28.000') + \ + pd.to_timedelta(np.arange(10), unit='s') + frame1.index = index1 + + frame2 = pd.Series(np.arange(10, 20)) + index2 = pd.Timestamp('2018-01-29 15:00:28.002') + \ + pd.to_timedelta(np.arange(10), unit='s') + frame2.index = index2 + + msg = 'Invalid value for align_to parameter: invalid' + with self.assertRaises(ValueError, msg=msg): + align_frames(frame1, frame2, align_to='invalid') + + msg = 'Frames do not overlap' + with self.assertRaises(ValueError, msg=msg): + align_frames(frame1, frame2) + + frame1 = pd.Series(np.arange(10)) + index1 = pd.Timestamp('2018-01-29 15:00:28.000') + \ + pd.to_timedelta(np.arange(10), unit='s') + frame1.index = index1 + + frame2 = pd.Series(np.arange(10, 20)) + index2 = pd.Timestamp('2018-01-29 15:19:28.002') + \ + pd.to_timedelta(np.arange(10), unit='s') + frame2.index = index2 + + msg = 'Frames do not overlap' + with self.assertRaises(ValueError, msg=msg): + align_frames(frame1, frame2) + + def test_align_crop(self): + frame1 = pd.Series(np.arange(10)) + index1 = pd.Timestamp('2018-01-29 15:19:30.000') + \ + pd.to_timedelta(np.arange(10), unit='s') + frame1.index = index1 + + frame2 = pd.Series(np.arange(10, 20)) + index2 = pd.Timestamp('2018-01-29 15:19:28.002') + \ + pd.to_timedelta(np.arange(10), unit='s') + frame2.index = index2 + + # align left + aframe1, aframe2 = align_frames(frame1, frame2, align_to='left') + self.assertTrue(aframe1.index.equals(aframe2.index)) + + # align right + aframe1, aframe2 = align_frames(frame1, frame2, align_to='right') + self.assertTrue(aframe1.index.equals(aframe2.index)) + + def test_align_and_crop_series(self): + frame1 = pd.Series(np.arange(10)) + index1 = pd.Timestamp('2018-01-29 15:19:28.000') + \ + pd.to_timedelta(np.arange(10), unit='s') + frame1.index = index1 + + frame2 = pd.Series(np.arange(10, 20)) + index2 = pd.Timestamp('2018-01-29 15:19:28.002') + \ + pd.to_timedelta(np.arange(10), unit='s') + frame2.index = index2 + + # align left + aframe1, aframe2 = align_frames(frame1, frame2, align_to='left') + self.assertTrue(aframe1.index.equals(aframe2.index)) + + # align right + aframe1, aframe2 = align_frames(frame1, frame2, align_to='right') + self.assertTrue(aframe1.index.equals(aframe2.index)) + + def test_align_and_crop_df(self): + frame1 = pd.DataFrame(np.array([np.arange(10), np.arange(10, 20)]).T) + index1 = pd.Timestamp('2018-01-29 15:19:28.000') + \ + pd.to_timedelta(np.arange(10), unit='s') + frame1.index = index1 + + frame2 = pd.DataFrame(np.array([np.arange(20,30), np.arange(30, 40)]).T) + index2 = pd.Timestamp('2018-01-29 15:19:28.002') + \ + pd.to_timedelta(np.arange(10), unit='s') + frame2.index = index2 + + # align left + aframe1, aframe2 = align_frames(frame1, frame2, align_to='left') + self.assertFalse(aframe1.index.empty) + self.assertFalse(aframe2.index.empty) + self.assertTrue(aframe1.index.equals(aframe2.index)) + + # align right + aframe1, aframe2 = align_frames(frame1, frame2, align_to='right') + self.assertFalse(aframe1.index.empty) + self.assertFalse(aframe2.index.empty) + self.assertTrue(aframe1.index.equals(aframe2.index)) + + def test_align_and_crop_df_fill(self): + frame1 = pd.DataFrame(np.array([np.arange(10), np.arange(10, 20)]).T) + frame1.columns = ['A', 'B'] + index1 = pd.Timestamp('2018-01-29 15:19:28.000') + \ + pd.to_timedelta(np.arange(10), unit='s') + frame1.index = index1 + + frame2 = pd.DataFrame(np.array([np.arange(20, 30), np.arange(30, 40)]).T) + frame2.columns = ['C', 'D'] + index2 = pd.Timestamp('2018-01-29 15:19:28.002') + \ + pd.to_timedelta(np.arange(10), unit='s') + frame2.index = index2 + + aframe1, aframe2 = align_frames(frame1, frame2, fill={'B': 'bfill'}) + self.assertTrue(aframe1['B'].equals(frame1['B'].iloc[1:].astype(float))) + + left, right = frame1.align(frame2, axis=0, copy=True) + left = left.fillna(method='bfill') + left = left.reindex(frame2.index).dropna() + aframe1, aframe2 = align_frames(frame1, frame2, align_to='right', + fill={'B': 'bfill'}) + self.assertTrue(aframe1['B'].equals(left['B'])) + + left, right = frame1.align(frame2, axis=0, copy=True) + left = left.fillna(value=0) + left = left.reindex(frame2.index).dropna() + aframe1, aframe2 = align_frames(frame1, frame2, align_to='right', + fill={'B': 0}) + self.assertTrue(aframe1['B'].equals(left['B'])) diff --git a/tests/test_graphs.py b/tests/test_graphs.py index abb837d..d40c49f 100644 --- a/tests/test_graphs.py +++ b/tests/test_graphs.py @@ -1,6 +1,5 @@ # coding: utf-8 -import pytest import unittest import csv from pyqtgraph.flowchart import Flowchart diff --git a/tests/test_gravity_ingestor.py b/tests/test_gravity_ingestor.py index a9abd60..1d81bdd 100644 --- a/tests/test_gravity_ingestor.py +++ b/tests/test_gravity_ingestor.py @@ -59,26 +59,26 @@ def test_import_at1a_no_fill_nans(self): df = gi.read_at1a(os.path.abspath('tests/sample_gravity.csv'), fill_with_nans=False) self.assertEqual(df.shape, (9, 26)) - fields = ['gravity', 'long', 'cross', 'beam', 'temp', 'status', 'pressure', 'Etemp', 'GPSweek', 'GPSweekseconds'] + fields = ['gravity', 'long_accel', 'cross_accel', 'beam', 'temp', 'status', 'pressure', 'Etemp', 'GPSweek', 'GPSweekseconds'] # Test and verify an arbitrary line of data against the same line in the pandas DataFrame line5 = [10061.171360, -0.026226, -0.094891, -0.093803, 62.253987, 21061, 39.690004, 52.263138, 1959, 219697.800] sample_line = dict(zip(fields, line5)) self.assertEqual(df.gravity[4], sample_line['gravity']) - self.assertEqual(df.long[4], sample_line['long']) + self.assertEqual(df.long_accel[4], sample_line['long_accel']) self.assertFalse(df.gps_sync[8]) def test_import_at1a_fill_nans(self): df = gi.read_at1a(os.path.abspath('tests/sample_gravity.csv')) self.assertEqual(df.shape, (9, 26)) - fields = ['gravity', 'long', 'cross', 'beam', 'temp', 'status', 'pressure', 'Etemp', 'GPSweek', 'GPSweekseconds'] + fields = ['gravity', 'long_accel', 'cross', 'beam', 'temp', 'status', 'pressure', 'Etemp', 'GPSweek', 'GPSweekseconds'] # Test and verify an arbitrary line of data against the same line in the pandas DataFrame line5 = [10061.171360, -0.026226, -0.094891, -0.093803, 62.253987, 21061, 39.690004, 52.263138, 1959, 219697.800] sample_line = dict(zip(fields, line5)) self.assertEqual(df.gravity[5], sample_line['gravity']) - self.assertEqual(df.long[5], sample_line['long']) + self.assertEqual(df.long_accel[5], sample_line['long_accel']) self.assertTrue(df.iloc[[2]].isnull().values.all()) def test_import_at1a_interp(self): diff --git a/tests/test_plotters.py b/tests/test_plotters.py index 9ea7574..591bd94 100644 --- a/tests/test_plotters.py +++ b/tests/test_plotters.py @@ -40,8 +40,8 @@ def setUp(self): self.dsrc = MockDataSource(self.df, 'abc', grav_path.name, self.df.keys(), DataTypes.GRAVITY, x0, x1) self.grav_ch = DataChannel('gravity', self.dsrc) - self.cross_ch = DataChannel('cross', self.dsrc) - self.long_ch = DataChannel('long', self.dsrc) + self.cross_ch = DataChannel('cross_accel', self.dsrc) + self.long_ch = DataChannel('long_accel', self.dsrc) self.plotter = BasicPlotter(rows=2) self.mgr = self.plotter.axmgr diff --git a/build/build_uic.py b/utils/build_uic.py similarity index 100% rename from build/build_uic.py rename to utils/build_uic.py From d0fdf7ea837b0ca658a23e061c875e670da5036a Mon Sep 17 00:00:00 2001 From: Zachery Brady Date: Wed, 23 May 2018 09:40:12 -0600 Subject: [PATCH 061/236] CLN: Cleaned up old comments/debug statements. Removed debug print statements and commented debug code. Changed data file delete context action to warn (log) that the function is not yet implemented (instead of raising a NotImplementedError) Removed unused code paths from workspaces.py from old tree-context switching between flight tabs - flights now have their own embedded 'model' to choose data channels. --- dgp/gui/dialogs.py | 6 ++-- dgp/gui/main.py | 39 ++++------------------- dgp/gui/plotting/mplutils.py | 1 - dgp/gui/views.py | 8 ++--- dgp/gui/workspace.py | 31 ++---------------- dgp/gui/workspaces/PlotTab.py | 4 +-- examples/plot2_prototype.py | 2 +- examples/pyqtgraph_line_selection_plot.py | 18 ----------- 8 files changed, 18 insertions(+), 91 deletions(-) diff --git a/dgp/gui/dialogs.py b/dgp/gui/dialogs.py index 845ae56..0d6510b 100644 --- a/dgp/gui/dialogs.py +++ b/dgp/gui/dialogs.py @@ -1,4 +1,4 @@ -# coding: utf-8 +# -*- coding: utf-8 -*- import os import csv @@ -414,7 +414,6 @@ def path(self, value): self.line_path.setText('None') return - print("Raw path value: ", value) self._path = pathlib.Path(value) self.line_path.setText(str(self._path.resolve())) if not self._path.exists(): @@ -500,6 +499,9 @@ def _update(self): self._sample = sample + # TODO: Determine if this is useful: takes a sample of first <_preview_limit> lines, and the last line + # in the file to display as a preview to the user when importing. + # count = 0 # sbuf = io.StringIO() # with open(self.path) as fd: diff --git a/dgp/gui/main.py b/dgp/gui/main.py index bee7832..dc31bea 100644 --- a/dgp/gui/main.py +++ b/dgp/gui/main.py @@ -11,7 +11,6 @@ from PyQt5.QtCore import pyqtSignal, pyqtBoundSignal from PyQt5.QtWidgets import QMainWindow, QProgressDialog, QFileDialog - import dgp.lib.project as prj import dgp.lib.types as types import dgp.lib.enums as enums @@ -94,8 +93,8 @@ def __init__(self, project: Union[prj.GravityProject, self._default_status_timeout = 5000 # Status Msg timeout in milli-sec # Issue #50 Flight Tabs + # flight_tabs is a custom Qt Widget (dgp.gui.workspace) promoted within the .ui file self._flight_tabs = self.flight_tabs # type: QtWidgets.QTabWidget - # self._flight_tabs = CustomTabWidget() self._open_tabs = {} # Track opened tabs by {uid: tab_widget, ...} # Initialize Project Tree Display @@ -140,7 +139,6 @@ def _init_slots(self): self.action_file_save.triggered.connect(self.save_project) # Project Menu Actions # - # self.action_import_data.triggered.connect(self.import_data_dialog) self.action_import_gps.triggered.connect( lambda: self.import_data_dialog(enums.DataTypes.TRAJECTORY)) self.action_import_grav.triggered.connect( @@ -153,14 +151,12 @@ def _init_slots(self): # Project Control Buttons # self.prj_add_flight.clicked.connect(self.add_flight_dialog) - # self.prj_import_data.clicked.connect(self.import_data_dialog) self.prj_import_gps.clicked.connect( lambda: self.import_data_dialog(enums.DataTypes.TRAJECTORY)) self.prj_import_grav.clicked.connect( lambda: self.import_data_dialog(enums.DataTypes.GRAVITY)) # Tab Browser Actions # - self._flight_tabs.currentChanged.connect(self._flight_tab_changed) self._flight_tabs.tabCloseRequested.connect(self._tab_closed) # Console Window Actions # @@ -221,7 +217,6 @@ def _launch_tab(self, index: QtCore.QModelIndex=None, flight=None) -> None: self.log.info("Launching tab for flight: UID<{}>".format(flight.uid)) new_tab = FlightTab(flight) - new_tab.contextChanged.connect(self._update_context_tree) self._open_tabs[flight.uid] = new_tab t_idx = self._flight_tabs.addTab(new_tab, flight.name) self._flight_tabs.setCurrentIndex(t_idx) @@ -229,47 +224,23 @@ def _launch_tab(self, index: QtCore.QModelIndex=None, flight=None) -> None: def _tab_closed(self, index: int): # TODO: Should we delete the tab, or pop it off the stack to a cache? self.log.warning("Tab close requested for tab: {}".format(index)) - flight_id = self._flight_tabs.widget(index).flight.uid self._flight_tabs.removeTab(index) - tab = self._open_tabs.pop(flight_id) - - def _flight_tab_changed(self, index: int): - self.log.info("Flight Tab changed to index: {}".format(index)) - if index == -1: # If no tabs are displayed - # self._context_tree.setModel(None) - return - tab = self._flight_tabs.widget(index) # type: FlightTab - if tab.subtab_widget(): - print("Active flight subtab has a widget") - # self._context_tree.setModel(tab.context_model) - # self._context_tree.expandAll() - - def _update_context_tree(self, model): - self.log.debug("Tab subcontext changed. Changing Tree Model") - # self._context_tree.setModel(model) - # self._context_tree.expandAll() def _project_item_removed(self, item: types.BaseTreeItem): - print("Got item: ", type(item), " in _prj_item_removed") if isinstance(item, types.DataSource): flt = item.flight - print("Dsource flt: ", flt) # Error here, flt.uid is not in open_tabs when it should be. if not flt.uid not in self._open_tabs: - print("Flt not in open tabs") return tab = self._open_tabs.get(flt.uid, None) # type: FlightTab if tab is None: - print("tab not open") return try: - print("Calling tab.data_deleted") tab.data_deleted(item) except: - print("Exception of some sort encountered deleting item") + self.log.exception("Exception of some sort encountered deleting item") else: - print("Data deletion sucessful?") - + self.log.debug("Data deletion sucessful?") else: return @@ -407,7 +378,7 @@ def import_data_dialog(self, dtype=None) -> None: Launch a dialog window for user to specify path and parameters to load a file of dtype. Params gathered by dialog will be passed to :py:meth: self.load_file - which constrcuts the loading thread and performs the import. + which constructs the loading thread and performs the import. Parameters ---------- @@ -463,6 +434,8 @@ def add_flight_dialog(self) -> None: self.log.info("Adding flight {}".format(flight.name)) self.project.add_flight(flight) + # TODO: Need to re-implement this for new data import method + # OR - remove the option to add data during flight creation # if dialog.gravity: # self.import_data(dialog.gravity, 'gravity', flight) # if dialog.gps: diff --git a/dgp/gui/plotting/mplutils.py b/dgp/gui/plotting/mplutils.py index f2b6573..1c1e3ad 100644 --- a/dgp/gui/plotting/mplutils.py +++ b/dgp/gui/plotting/mplutils.py @@ -469,7 +469,6 @@ def highlight_edge(self, xdata: float) -> None: group.set_edge(edge, 'red', select=False) break else: - # group.set_edge('', 'black', select=False) self.parent.setCursor(QtCore.Qt.PointingHandCursor) for group in self.patchgroups: diff --git a/dgp/gui/views.py b/dgp/gui/views.py index fca96c9..3f83543 100644 --- a/dgp/gui/views.py +++ b/dgp/gui/views.py @@ -32,7 +32,6 @@ def __init__(self, parent=None): self.setHeaderHidden(True) self.setObjectName('project_tree') self.setContextMenuPolicy(QtCore.Qt.DefaultContextMenu) - # self._init_model() def set_project(self, project): self._project = project @@ -86,6 +85,9 @@ def _info_action(self, item): def _remove_data_action(self, item: types.BaseTreeItem): if not isinstance(item, types.DataSource): return + self.log.warning("Remove data not yet implemented (bugs to fix)") + return + raise NotImplementedError("Remove data not yet implemented.") # Confirmation Dialog confirm = QtWidgets.QMessageBox(parent=self.parent()) @@ -95,11 +97,9 @@ def _remove_data_action(self, item: types.BaseTreeItem): confirm.setWindowTitle("Confirm Delete") res = confirm.exec_() if res: - print("Emitting item_removed signal") self.item_removed.emit(item) - print("removing item from its flight") try: item.flight.remove_data(item) except: - print("Exception occured removing item from flight") + self.log.exception("Exception occured removing item from flight") diff --git a/dgp/gui/workspace.py b/dgp/gui/workspace.py index 9236cc9..eb8e269 100644 --- a/dgp/gui/workspace.py +++ b/dgp/gui/workspace.py @@ -1,5 +1,4 @@ -# coding: utf-8 - +# -*- coding: utf-8 -*- import logging @@ -19,8 +18,6 @@ class FlightTab(QWidget): """Top Level Tab created for each Flight object open in the workspace""" - contextChanged = pyqtSignal(models.BaseTreeModel) # type: pyqtBoundSignal - def __init__(self, flight: Flight, parent=None, flags=0, **kwargs): super().__init__(parent=parent, flags=Qt.Widget) self.log = logging.getLogger(__name__) @@ -30,7 +27,6 @@ def __init__(self, flight: Flight, parent=None, flags=0, **kwargs): # _workspace is the inner QTabWidget containing the WorkspaceWidgets self._workspace = QTabWidget() self._workspace.setTabPosition(QTabWidget.West) - self._workspace.currentChanged.connect(self._on_changed_context) self._layout.addWidget(self._workspace) # Define Sub-Tabs within Flight space e.g. Plot, Transform, Maps @@ -43,33 +39,19 @@ def __init__(self, flight: Flight, parent=None, flags=0, **kwargs): self._line_proc_tab = LineProcessTab("Line Processing", flight) self._workspace.addTab(self._line_proc_tab, "Line Processing") - # self._map_tab = WorkspaceWidget("Map") - # self._workspace.addTab(self._map_tab, "Map") - - self._context_models = {} - self._workspace.setCurrentIndex(0) self._plot_tab.update() def subtab_widget(self): return self._workspace.currentWidget().widget() - def _on_changed_context(self, index: int): - self.log.debug("Flight {} sub-tab changed to index: {}".format( - self.flight.name, index)) - try: - model = self._workspace.currentWidget().model - self.contextChanged.emit(model) - except AttributeError: - pass - def new_data(self, dsrc: types.DataSource): for tab in [self._plot_tab, self._transform_tab]: tab.data_modified('add', dsrc) def data_deleted(self, dsrc): + self.log.debug("Notifying tabs of data-source deletion.") for tab in [self._plot_tab]: - print("Calling remove for each tab") tab.data_modified('remove', dsrc) @property @@ -80,15 +62,6 @@ def flight(self): def plot(self): return self._plot - @property - def context_model(self): - """Return the QAbstractModel type for the given context i.e. current - sub-tab of this flight. This enables different sub-tabs of a this - Flight Tab to specify a tree view model to be displayed as the tabs - are switched.""" - current_tab = self._workspace.currentWidget() # type: WorkspaceWidget - return current_tab.model - class _WorkspaceTabBar(QtWidgets.QTabBar): """Custom Tab Bar to allow us to implement a custom Context Menu to diff --git a/dgp/gui/workspaces/PlotTab.py b/dgp/gui/workspaces/PlotTab.py index a8e9ee9..fbdbb83 100644 --- a/dgp/gui/workspaces/PlotTab.py +++ b/dgp/gui/workspaces/PlotTab.py @@ -1,4 +1,4 @@ -# coding: utf-8 +# -*- coding: utf-8 -*- import logging @@ -72,10 +72,8 @@ def _init_model(self, default_state=False): def _toggle_selection(self, state: bool): self.plot.selection_mode = state if state: - # self._toggle_mode.setText("Exit Line Selection Mode") self._mode_label.setText("

Line Selection Active

") else: - # self._toggle_mode.setText("Enter Line Selection Mode") self._mode_label.setText("") def set_defaults(self, channels): diff --git a/examples/plot2_prototype.py b/examples/plot2_prototype.py index dea6cd2..9d3d35b 100644 --- a/examples/plot2_prototype.py +++ b/examples/plot2_prototype.py @@ -16,7 +16,7 @@ os.chdir('..') import dgp.lib.project as project -from dgp.gui.plotting.plotter2 import FlightLinePlot +# from dgp.gui.plotting.plotter2 import FlightLinePlot class MockDataChannel: diff --git a/examples/pyqtgraph_line_selection_plot.py b/examples/pyqtgraph_line_selection_plot.py index bef00da..aa6d92d 100644 --- a/examples/pyqtgraph_line_selection_plot.py +++ b/examples/pyqtgraph_line_selection_plot.py @@ -10,14 +10,10 @@ import PyQt5.Qt as Qt import numpy as np from pandas import Series, DatetimeIndex -from matplotlib.axes import Axes -from matplotlib.patches import Rectangle -from matplotlib.dates import date2num os.chdir('..') import dgp.lib.project as project from dgp.gui.plotting.plotters import PqtLineSelectPlot as LineSelectPlot -from pyqtgraph.graphicsItems.LinearRegionItem import LinearRegionItem class MockDataChannel: @@ -42,14 +38,6 @@ def __init__(self): self._plot = LineSelectPlot(flight=self._flight, rows=3) self._plot.line_changed.connect(lambda upd: print(upd)) - # self.plot.figure.canvas.mpl_connect('pick_event', lambda x: print( - # "Pick event handled")) - # self.plot.mgr = StackedAxesManager(self.plot.figure, rows=2) - # self._toolbar = NavToolbar(self.plot, parent=self) - # self._toolbar.actions()[0] = QtWidgets.QAction("Reset View") - # self._toolbar.actions()[0].triggered.connect(lambda x: print( - # "Action 0 triggered")) - self.setCentralWidget(self._plot.widget) self.show() @@ -64,12 +52,6 @@ def __init__(self): xrng = x1 - x0 tenpct = xrng * .1 - # lri = LinearRegionItem() - # lri.sigRegionChanged.connect(lambda rng: print("LRI Range changed to: ", - # rng.getRegion())) - # p0.addItem(lri) - # lri.setRegion([x0, x0+tenpct]) - def excepthook(type_, value, traceback_): """This allows IDE to properly display unhandled exceptions which are From d532cbb12c1e7a94b0a7020033a1c6b36badecfe Mon Sep 17 00:00:00 2001 From: chris Date: Tue, 20 Feb 2018 14:53:39 -0500 Subject: [PATCH 062/236] Added graph and transform internals --- dgp/lib/transform/graph.py | 48 +++++++++ dgp/lib/transform/transform.py | 179 +++++++++++++++++++++++++++++++++ 2 files changed, 227 insertions(+) create mode 100644 dgp/lib/transform/graph.py create mode 100644 dgp/lib/transform/transform.py diff --git a/dgp/lib/transform/graph.py b/dgp/lib/transform/graph.py new file mode 100644 index 0000000..2643a23 --- /dev/null +++ b/dgp/lib/transform/graph.py @@ -0,0 +1,48 @@ +# coding=utf-8 + +from collections import defaultdict + + +class Graph: + def __init__(self): + self._graph = defaultdict(list) + self._toposort = [] + + @classmethod + def from_list(cls, inlist): + """ Generates a graph from the given adjacency list """ + g = cls() + g._graph = inlist + return g + + def add_edge(self, u, v): + """ Add an edge to the graph """ + self._graph[u].append(v) + if v not in self._graph: + self._graph[v] = [] + + def remove_edge(self, u, v): + """ Remove an edge from the graph """ + self._graph[u].remove(v) + + def _visit(self, node, visited, stack): + if node in stack: + return + elif node in visited: + raise Exception('Graph cycle detected.') + + visited.append(node) + for i in self._graph[node]: + self._visit(i, visited, stack) + + stack.insert(0, node) + + def _toposort(self): + """ Topological sorting of the graph """ + visited = [] + stack = [] + + for node in self._graph: + self._visit(node, visited, stack) + return stack + diff --git a/dgp/lib/transform/transform.py b/dgp/lib/transform/transform.py new file mode 100644 index 0000000..66319a3 --- /dev/null +++ b/dgp/lib/transform/transform.py @@ -0,0 +1,179 @@ +# coding=utf-8 + +from pandas import DataFrame +import inspect +from functools import wraps + +from dgp.lib.etc import gen_uuid, dedup_dict + + +transform_registry = {} + + +def createtransform(func): + """ + Function decorator that generates a transform class for the decorated + function. + + This decorator is an alternative to defining a subclass of Transform. + The class generated by this decorator is automatically inserted into the + transform registry. + + Positional arguments are reserved for data. + Required keyword arguments are made into attributes of the class. + + Returns + ------- + Transform + A callable instance of a class that subclasses Transform + """ + + def class_func(self, *args, **kwargs): + return func(*args, **kwargs) + + sig = inspect.signature(func) + class_id = func.__name__ + cls = type(class_id, (Transform,), + dict(func=class_func, _sig=sig)) + transform_registry[class_id] = cls + + @wraps(func) + def wrapper(*args, **kwargs): + return cls(*args, **kwargs) + + return wrapper + + +def register_transform_class(cls): + """ + Class decorator for constructing transform classes. + + The decorator adds an entry for the decorated class into the transform + class registry. + """ + class_id = cls.__name__ + if class_id in transform_registry: + raise KeyError('Transform class {cls} already exists in registry.' + .format(cls=class_id)) + + transform_registry[class_id] = cls + return cls + + +class Transform: + """ + Transform base class. + + All transform classes should subclass this one. + + The class instance is callable. When a class instance is called, all of the + variables specified in the function signature must have a value, otherwise + a ValueError will be raised. + + There are three ways to specify and set values for variables used by the + function: + - in the function signature + - as keyword arguments with values when instantiating the class + - as keywords when the instance is called + + In all cases, variables are made into attributes of the class set with + the values specified. + + Additional variables can be added as attributes (as metadata, for example) + of the class by passing the names and values as keyword arguments when + instantiating the class. + """ + + def __init__(self, **kwargs): + self._uid = gen_uuid('tf') + self._var_list = [] + + if getattr(self, '_sig', None) is None: + self._sig = inspect.signature(self.func) + + for param in self._sig.parameters.values(): + if param.kind == param.KEYWORD_ONLY and getattr(self, param.name, None) is None: + if param.default is not param.empty: + setattr(self, param.name, param.default) + self._var_list.append(param.name) + + # add attributes not explicitly used by the function + for k, v in kwargs.items(): + setattr(self, k, v) + + @property + def uid(self): + return self._uid + + def __call__(self, *args, **kwargs): + keywords = {name: self.__dict__[name] for name in self._var_list + if name in self.__dict__} + + # override keywords explicitly set in function call + for k, v in kwargs.items(): + if getattr(self, k, None) is None: + setattr(self, k, v) + + keywords[k] = v + + # check whether all attributes have values set + notset = [] + for name in self._var_list: + if name not in keywords: + notset.append(name) + + if notset: + raise ValueError('Required attributes not set: {attr}' + .format(attr=', '.join(notset))) + + return self.func(*args, **keywords) + + def __str__(self): + attrs = ', '.join(['{var}={val}'.format(var=k, val=v) + for k, v in [(var, self.__dict__[var]) + for var in self._var_list]]) + return '{cls}({attrs})'.format(cls=self.__class__.__name__, + attrs=attrs) + + +class DataWrapper: + """ + A container for transformed DataFrames. Multiple transform chains may + be specified and the resultant DataFrames will be held in this class + instance. + """ + def __init__(self, frame: DataFrame): + self.df = frame # original DataFrame; not ever modified + self.modified = {} + self._transform_chains = {} + self._defaultchain = None + + def removechain(self, uid): + del self._transform_chains[uid] + del self.modified[uid] + + def applychain(self, tc): + if not isinstance(tc, TransformChain): + raise TypeError('expected an instance or subclass of ' + 'TransformChain, but got {typ}' + .format(typ=type(tc))) + + if tc.uid not in self._transform_chains: + self._transform_chains[tc.uid] = tc + if self._defaultchain is None: + self._defaultchain = self._transform_chains[tc.uid] + self.modified[tc.uid] = self._transform_chains[tc.uid].apply(self.df) + return self.modified[tc.uid] + + @property + def data(self, reapply=False): + if self._defaultchain is not None: + if reapply: + return self.applychain(self._defaultchain) + else: + return self.modified[self._defaultchain.uid] + else: + return self.df + + def __len__(self): + return len(self.modified.items()) From 147f46f122be26bbb12325e0d27a7fd22b4be939 Mon Sep 17 00:00:00 2001 From: chris Date: Wed, 21 Feb 2018 10:54:26 -0500 Subject: [PATCH 063/236] Changes to Graph class --- dgp/lib/transform/graph.py | 4 +--- 1 file changed, 1 insertion(+), 3 deletions(-) diff --git a/dgp/lib/transform/graph.py b/dgp/lib/transform/graph.py index 2643a23..b6d37b4 100644 --- a/dgp/lib/transform/graph.py +++ b/dgp/lib/transform/graph.py @@ -1,11 +1,9 @@ # coding=utf-8 -from collections import defaultdict - class Graph: def __init__(self): - self._graph = defaultdict(list) + self._graph = {} self._toposort = [] @classmethod From 575afd72915c5451d7cf068cf93408d537bc6ce3 Mon Sep 17 00:00:00 2001 From: chris Date: Wed, 28 Feb 2018 13:46:14 -0500 Subject: [PATCH 064/236] Added TransformGraph class --- dgp/lib/transform/graph.py | 99 +++++++++++++++++++++++++++++++++----- 1 file changed, 88 insertions(+), 11 deletions(-) diff --git a/dgp/lib/transform/graph.py b/dgp/lib/transform/graph.py index b6d37b4..d5aae05 100644 --- a/dgp/lib/transform/graph.py +++ b/dgp/lib/transform/graph.py @@ -1,17 +1,84 @@ # coding=utf-8 +from copy import copy +from functools import partial -class Graph: - def __init__(self): - self._graph = {} - self._toposort = [] +class TransformGraph: + # TODO: Use magic methods for math ops where available + + def __init__(self, graph): + self._transform_graph = graph + self._graph = self._make_graph() + self._order = self._graph._toposort() + self._results = None + self._graph_changed = False + + @property + def graph(self): + return self._transform_graph + + @graph.setter + def graph(self, g): + self._transform_graph = g + self._graph = self._make_graph() + self._order = self._graph._toposort() + self._graph_changed = True + + @property + def results(self): + return self._results + + def _make_graph(self): + adjacency_list = {k: [] for k in self._transform_graph} + + for k in self._transform_graph: + node = self._transform_graph[k] + if isinstance(node, tuple): + args = list(node[1:]) + for i in args: + adjacency_list[k] += list(i) + return Graph(adjacency_list) + + def execute(self): + if not self._graph_changed: + return self._results + else: + order = copy(self._order) + results = {} - @classmethod - def from_list(cls, inlist): - """ Generates a graph from the given adjacency list """ - g = cls() - g._graph = inlist - return g + def _tuple_to_func(tup): + func = tup[0] + args = [] + for arg in tup[1:]: + # TODO: Account for any kind of iterable, including generators. + if isinstance(arg, list): + args.append([results[x] for x in arg]) + else: + args.append(results[arg]) + new_tup = tuple([func] + args) + print(new_tup) + return partial(*new_tup) + + while order: + k = order.pop() + node = self._transform_graph[k] + if isinstance(node, tuple): + f = _tuple_to_func(node) + results[k] = f() + else: + results[k] = self._transform_graph[k] + self._results = results + self._graph_changed = False + return self._results + + def __str__(self): + return str(self._transform_graph) + + +class Graph: + def __init__(self, graph): + self._graph = graph + self._topo = [] def add_edge(self, u, v): """ Add an edge to the graph """ @@ -36,7 +103,14 @@ def _visit(self, node, visited, stack): stack.insert(0, node) def _toposort(self): - """ Topological sorting of the graph """ + """ + Topological sorting of the graph + + Returns + ------- + list + Order of execution as a stack + """ visited = [] stack = [] @@ -44,3 +118,6 @@ def _toposort(self): self._visit(node, visited, stack) return stack + def __str__(self): + return str(self._graph) + From 45314331bf3d1f27cd6aaff5f22aae3b174ea304 Mon Sep 17 00:00:00 2001 From: chris Date: Fri, 2 Mar 2018 11:46:24 -0500 Subject: [PATCH 065/236] Added tests and converted operations --- dgp/lib/transform/derivatives.py | 40 +--- dgp/lib/transform/filters.py | 119 +++--------- dgp/lib/transform/graph.py | 58 ++++-- dgp/lib/transform/gravity.py | 313 +++++++++++++------------------ tests/test_transform.py | 64 +++++++ 5 files changed, 264 insertions(+), 330 deletions(-) create mode 100644 tests/test_transform.py diff --git a/dgp/lib/transform/derivatives.py b/dgp/lib/transform/derivatives.py index c1df39f..932a376 100644 --- a/dgp/lib/transform/derivatives.py +++ b/dgp/lib/transform/derivatives.py @@ -1,11 +1,9 @@ # coding: utf-8 -from pyqtgraph.flowchart.library.common import CtrlNode, Node - import numpy as np -def centraldifference(data_in, n=1, order=2, dt=0.1): +def central_difference(data_in, n=1, order=2, dt=0.1): if order == 2: # first derivative if n == 1: @@ -17,44 +15,10 @@ def centraldifference(data_in, n=1, order=2, dt=0.1): else: raise ValueError('Invalid value for parameter n {1 or 2}') else: - raise NotImplementedError() + raise NotImplementedError return np.pad(dy, (1, 1), 'edge') - return dy def gradient(data_in, dt=0.1): return np.gradient(data_in, dt) - - -class CentralDifference(CtrlNode): - nodeName = "centraldifference" - uiTemplate = [ - ('order', 'combo', {'values': [2, 4], 'index': 0}), - ('n', 'combo', {'values': [1, 2], 'index': 0}), - ('dt', 'spin', {'value': 0.1, 'step': 0.1, 'bounds': [0.0001, None]}) - ] - - def __init__(self, name): - terminals = { - 'data_in': dict(io='in'), - 'data_out': dict(io='out'), - } - - CtrlNode.__init__(self, name, terminals=terminals) - - def process(self, data_in, display=True): - if self.ctrls['order'] == 2: - # first derivative - if self.ctrls['n'] == 1: - dy = (data_in[2:] - data_in[0:-2]) / (2 * self.ctrls['dt']) - # second derivative - elif self.ctrls['n'] == 2: - dy = ((data_in[0:-2] - 2 * data_in[1:-1] + data_in[2:]) / - np.power(self.ctrls['dt'], 2)) - else: - raise ValueError('Invalid value for parameter n {1 or 2}') - else: - raise NotImplementedError() - - return {'data_out': np.pad(dy, (1, 1), 'edge')} \ No newline at end of file diff --git a/dgp/lib/transform/filters.py b/dgp/lib/transform/filters.py index b91658d..a5b167c 100644 --- a/dgp/lib/transform/filters.py +++ b/dgp/lib/transform/filters.py @@ -8,103 +8,28 @@ import numpy as np -class FIRLowpassFilter(CtrlNode): - nodeName = 'FIRLowpassFilter' - uiTemplate = [ - ('length', 'spin', {'value': 60, 'step': 1, 'bounds': [1, None]}), - ('sample', 'spin', {'value': 0.5, 'step': 0.1, 'bounds': [0.0, None]}), - ('channel', 'combo', {'values': []}) - ] - - def __init__(self, name): - terminals = { - 'data_in': dict(io='in'), - 'data_out': dict(io='out'), - } - - CtrlNode.__init__(self, name, terminals=terminals) - - def process(self, data_in, display=True): - if display: - self.updateList(data_in) - - channel = self.ctrls['channel'].currentText() - if channel is not '': - data_in = data_in[channel] - - filter_len = self.ctrls['length'].value() - fs = self.ctrls['sample'].value() - fc = 1 / filter_len - nyq = fs / 2 - wn = fc / nyq - n = int(2 * filter_len * fs) - taps = signal.firwin(n, wn, window='blackman', nyq=nyq) - filtered_data = signal.filtfilt(taps, 1.0, data_in, padtype='even', - padlen=80) - return {'data_out': pd.Series(filtered_data, index=data_in.index, - name=channel)} - - def updateList(self, data): - # TODO: Work on better update algo - if isinstance(data, pd.DataFrame): - ctrl = self.ctrls['channel'] # type: QtWidgets.QComboBox - - count = ctrl.count() - items = [ctrl.itemText(i) for i in range(count)] - opts = [col for col in data if col not in items] - if opts: - print("updating cbox with: ", opts) - ctrl.addItems(opts) - - # def ctrlWidget(self): - # widget = super().ctrlWidget() - # widget.layout().addWidget(self.selection) - # return widget - +def lp_filter(data_in, filter_len, fs): + fc = 1 / filter_len + nyq = fs / 2 + wn = fc / nyq + n = int(2 * filter_len * fs) + taps = signal.firwin(n, wn, window='blackman') + filtered_data = signal.filtfilt(taps, 1.0, data_in, padtype='even', + padlen=80) + return pd.Series(filtered_data, index=data_in.index) # TODO: Do ndarrays with both dimensions greater than 1 work? -class Detrend(CtrlNode): - """ - Removes a linear trend from the input dataset - - Parameters - ---------- - data_in: :obj:`DataFrame` or list-like - Data to detrend. If a DataFrame is given, then all channels are - detrended. - - Returns - ------- - :class:`DataFrame` or list-like - - """ - nodeName = 'Detrend' - uiTemplate = [ - ('begin', 'spin', {'value': 0, 'step': 0.1, 'bounds': [None, None]}), - ('end', 'spin', {'value': 0, 'step': 0.1, 'bounds': [None, None]}) - ] - - def __init__(self, name): - terminals = { - 'data_in': dict(io='in'), - 'data_out': dict(io='out'), - } - - CtrlNode.__init__(self, name, terminals=terminals) - - def process(self, data_in, display=True): - if isinstance(data_in, pd.DataFrame): - length = len(data_in.index) - else: - length = len(data_in) - - trend = np.linspace(self.ctrls['begin'].value(), - self.ctrls['end'].value(), - num=length) - if isinstance(data_in, (pd.Series, pd.DataFrame)): - trend = pd.Series(trend, index=data_in.index) - result = data_in.sub(trend, axis=0) - else: - result = data_in - trend - return {'data_out': result} +def detrend(data_in, begin, end): + if isinstance(data_in, pd.DataFrame): + length = len(data_in.index) + else: + length = len(data_in) + + trend = np.linspace(begin, end, num=length) + if isinstance(data_in, (pd.Series, pd.DataFrame)): + trend = pd.Series(trend, index=data_in.index) + result = data_in.sub(trend, axis=0) + else: + result = data_in - trend + return {'data_out': result} diff --git a/dgp/lib/transform/graph.py b/dgp/lib/transform/graph.py index d5aae05..991cb63 100644 --- a/dgp/lib/transform/graph.py +++ b/dgp/lib/transform/graph.py @@ -1,31 +1,54 @@ -# coding=utf-8 +# coding: utf-8 from copy import copy from functools import partial +from collections.abc import Iterable + + +class GraphError(Exception): + def __init__(self, graph, message): + self.graph = graph + self.message = message class TransformGraph: # TODO: Use magic methods for math ops where available def __init__(self, graph): - self._transform_graph = graph - self._graph = self._make_graph() - self._order = self._graph._toposort() + self._init_graph(graph) self._results = None - self._graph_changed = False + self._graph_changed = True + + def _init_graph(self, g): + """ + Initialize the transform graph + + This is an internal method. + Do not modify the transform graph in place. Instead, use the setter. + """ + self._transform_graph = g + self._graph = self._make_graph() + self._order = self._graph.topo_sort() + + @property + def order(self): + return self._order @property def graph(self): + """ iterable: Transform graph + + Setter recomputes a topological sorting of the new graph. + """ return self._transform_graph @graph.setter def graph(self, g): - self._transform_graph = g - self._graph = self._make_graph() - self._order = self._graph._toposort() + self._init_graph(g) self._graph_changed = True @property def results(self): + """ dict: Most recent result""" return self._results def _make_graph(self): @@ -40,9 +63,8 @@ def _make_graph(self): return Graph(adjacency_list) def execute(self): - if not self._graph_changed: - return self._results - else: + """ Execute the transform graph """ + if self._graph_changed: order = copy(self._order) results = {} @@ -69,7 +91,8 @@ def _tuple_to_func(tup): results[k] = self._transform_graph[k] self._results = results self._graph_changed = False - return self._results + + return self._results def __str__(self): return str(self._transform_graph) @@ -77,6 +100,13 @@ def __str__(self): class Graph: def __init__(self, graph): + if not isinstance(graph, Iterable): + raise TypeError('Cannot construct graph from type {typ}' + .format(typ=type(graph))) + + if all(isinstance(x, Iterable) and not isinstance(x, (str, bytes, bytearray)) for x in graph): + raise TypeError('Graph must contain all iterables') + self._graph = graph self._topo = [] @@ -94,7 +124,7 @@ def _visit(self, node, visited, stack): if node in stack: return elif node in visited: - raise Exception('Graph cycle detected.') + raise GraphError(self._graph, 'Cycle detected') visited.append(node) for i in self._graph[node]: @@ -102,7 +132,7 @@ def _visit(self, node, visited, stack): stack.insert(0, node) - def _toposort(self): + def topo_sort(self): """ Topological sorting of the graph diff --git a/dgp/lib/transform/gravity.py b/dgp/lib/transform/gravity.py index 7db69fb..9a71479 100644 --- a/dgp/lib/transform/gravity.py +++ b/dgp/lib/transform/gravity.py @@ -1,7 +1,5 @@ # coding: utf-8 -from pyqtgraph.flowchart.library.common import Node - import numpy as np import pandas as pd from numpy import array @@ -9,7 +7,7 @@ from .derivatives import centraldifference -class Eotvos(Node): +def eotvos_correction(data_in): """ Eotvos correction @@ -24,165 +22,132 @@ class Eotvos(Node): Series using the index from the input """ - nodeName = 'Eotvos' - - # constants - a = 6378137.0 # Default semi-major axis - b = 6356752.3142 # Default semi-minor axis - ecc = (a - b) / a # Eccentricity - We = 0.00007292115 # sidereal rotation rate, radians/sec - mps2mgal = 100000 # m/s/s to mgal - dt = 0.1 - - def __init__(self, name): - terminals = { - 'data_in': dict(io='in'), - 'data_out': dict(io='out'), - } - - Node.__init__(self, name, terminals=terminals) - - def process(self, data_in, display=True): - lat = np.deg2rad(data_in['lat'].values) - lon = np.deg2rad(data_in['long'].values) - ht = data_in['ell_ht'].values - - dlat = centraldifference(lat, n=1, dt=self.dt) - ddlat = centraldifference(lat, n=2, dt=self.dt) - dlon = centraldifference(lon, n=1, dt=self.dt) - ddlon = centraldifference(lon, n=2, dt=self.dt) - dht = centraldifference(ht, n=1, dt=self.dt) - ddht = centraldifference(ht, n=2, dt=self.dt) - - # dlat = gradient(lat) - # ddlat = gradient(dlat) - # dlon = gradient(lon) - # ddlon = gradient(dlon) - # dht = gradient(ht) - # ddht = gradient(dht) - - sin_lat = np.sin(lat) - cos_lat = np.cos(lat) - sin_2lat = np.sin(2.0 * lat) - cos_2lat = np.cos(2.0 * lat) - - # Calculate the r' and its derivatives - r_prime = self.a * (1.0 - self.ecc * sin_lat * sin_lat) - dr_prime = -self.a * dlat * self.ecc * sin_2lat - ddr_prime = (-self.a * ddlat * self.ecc * sin_2lat - 2.0 * self.a * - dlat * dlat * self.ecc * cos_2lat) - - # Calculate the deviation from the normal and its derivatives - D = np.arctan(self.ecc * sin_2lat) - dD = 2.0 * dlat * self.ecc * cos_2lat - ddD = (2.0 * ddlat * self.ecc * cos_2lat - 4.0 * dlat * dlat * - self.ecc * sin_2lat) - - # Calculate this value once (used many times) - sinD = np.sin(D) - cosD = np.cos(D) - - # Calculate r and its derivatives - r = array([ - -r_prime * sinD, - np.zeros(r_prime.size), - -r_prime * cosD - ht - ]) - - rdot = array([ - (-dr_prime * sinD - r_prime * dD * cosD), - np.zeros(r_prime.size), - (-dr_prime * cosD + r_prime * dD * sinD - dht) - ]) - - ci = (-ddr_prime * sinD - 2.0 * dr_prime * dD * cosD - r_prime * - (ddD * cosD - dD * dD * sinD)) - ck = (-ddr_prime * cosD + 2.0 * dr_prime * dD * sinD + r_prime * - (ddD * sinD + dD * dD * cosD) - ddht) - r2dot = array([ - ci, - np.zeros(ci.size), - ck - ]) - - # Define w and its derivative - w = array([ - (dlon + self.We) * cos_lat, - -dlat, - (-(dlon + self.We)) * sin_lat - ]) - - wdot = array([ - dlon * cos_lat - (dlon + self.We) * dlat * sin_lat, - -ddlat, - (-ddlon * sin_lat - (dlon + self.We) * dlat * cos_lat) - ]) - - w2_x_rdot = np.cross(2.0 * w, rdot, axis=0) - wdot_x_r = np.cross(wdot, r, axis=0) - w_x_r = np.cross(w, r, axis=0) - wxwxr = np.cross(w, w_x_r, axis=0) - - we = array([ - self.We * cos_lat, - np.zeros(sin_lat.shape), - -self.We * sin_lat - ]) - - wexr = np.cross(we, r, axis=0) - wexwexr = np.cross(we, wexr, axis=0) - - # Calculate total acceleration for the aircraft - acc = r2dot + w2_x_rdot + wdot_x_r + wxwxr - - E = (acc[2] - wexwexr[2]) * self.mps2mgal - return {'data_out': pd.Series(E, index=data_in.index, name='eotvos')} - - -class LatitudeCorrection(Node): + lat = np.deg2rad(data_in['lat'].values) + lon = np.deg2rad(data_in['long'].values) + ht = data_in['ell_ht'].values + + dlat = centraldifference(lat, n=1, dt=self.dt) + ddlat = centraldifference(lat, n=2, dt=self.dt) + dlon = centraldifference(lon, n=1, dt=self.dt) + ddlon = centraldifference(lon, n=2, dt=self.dt) + dht = centraldifference(ht, n=1, dt=self.dt) + ddht = centraldifference(ht, n=2, dt=self.dt) + + # dlat = gradient(lat) + # ddlat = gradient(dlat) + # dlon = gradient(lon) + # ddlon = gradient(dlon) + # dht = gradient(ht) + # ddht = gradient(dht) + + sin_lat = np.sin(lat) + cos_lat = np.cos(lat) + sin_2lat = np.sin(2.0 * lat) + cos_2lat = np.cos(2.0 * lat) + + # Calculate the r' and its derivatives + r_prime = self.a * (1.0 - self.ecc * sin_lat * sin_lat) + dr_prime = -self.a * dlat * self.ecc * sin_2lat + ddr_prime = (-self.a * ddlat * self.ecc * sin_2lat - 2.0 * self.a * + dlat * dlat * self.ecc * cos_2lat) + + # Calculate the deviation from the normal and its derivatives + D = np.arctan(self.ecc * sin_2lat) + dD = 2.0 * dlat * self.ecc * cos_2lat + ddD = (2.0 * ddlat * self.ecc * cos_2lat - 4.0 * dlat * dlat * + self.ecc * sin_2lat) + + # Calculate this value once (used many times) + sinD = np.sin(D) + cosD = np.cos(D) + + # Calculate r and its derivatives + r = array([ + -r_prime * sinD, + np.zeros(r_prime.size), + -r_prime * cosD - ht + ]) + + rdot = array([ + (-dr_prime * sinD - r_prime * dD * cosD), + np.zeros(r_prime.size), + (-dr_prime * cosD + r_prime * dD * sinD - dht) + ]) + + ci = (-ddr_prime * sinD - 2.0 * dr_prime * dD * cosD - r_prime * + (ddD * cosD - dD * dD * sinD)) + ck = (-ddr_prime * cosD + 2.0 * dr_prime * dD * sinD + r_prime * + (ddD * sinD + dD * dD * cosD) - ddht) + r2dot = array([ + ci, + np.zeros(ci.size), + ck + ]) + + # Define w and its derivative + w = array([ + (dlon + self.We) * cos_lat, + -dlat, + (-(dlon + self.We)) * sin_lat + ]) + + wdot = array([ + dlon * cos_lat - (dlon + self.We) * dlat * sin_lat, + -ddlat, + (-ddlon * sin_lat - (dlon + self.We) * dlat * cos_lat) + ]) + + w2_x_rdot = np.cross(2.0 * w, rdot, axis=0) + wdot_x_r = np.cross(wdot, r, axis=0) + w_x_r = np.cross(w, r, axis=0) + wxwxr = np.cross(w, w_x_r, axis=0) + + we = array([ + self.We * cos_lat, + np.zeros(sin_lat.shape), + -self.We * sin_lat + ]) + + wexr = np.cross(we, r, axis=0) + wexwexr = np.cross(we, wexr, axis=0) + + # Calculate total acceleration for the aircraft + acc = r2dot + w2_x_rdot + wdot_x_r + wxwxr + + E = (acc[2] - wexwexr[2]) * self.mps2mgal + return pd.Series(E, index=data_in.index, name='eotvos') + + + +def latitude_correction(data_in): """ - WGS84 latitude correction - - Accounts for the Earth's elliptical shape and rotation. The gravity value - that would be observed if Earth were a perfect, rotating ellipsoid is - referred to as normal gravity. Gravity increases with increasing latitude. - The correction is added as one moves toward the equator. - - Parameters - ---------- - data_in: DataFrame - trajectory frame containing latitude, longitude, and - height above the ellipsoid - - Returns - ------- - Series - units are mGal - """ - - nodeName = 'LatitudeCorrection' - - def __init__(self, name): - terminals = { - 'data_in': dict(io='in'), - 'data_out': dict(io='out'), - } - - Node.__init__(self, name, terminals=terminals) - - def process(self, data_in, display=True): - lat = np.deg2rad(data_in['lat'].values) - sin_lat2 = np.sin(lat) ** 2 - num = 1 + np.float(0.00193185265241) * sin_lat2 - den = np.sqrt(1 - np.float(0.00669437999014) * sin_lat2) - corr = -np.float(978032.53359) * num / den - return {'data_out': pd.Series(corr, - index=data_in.index, - name='lat_corr')} - - -# TODO: Define behavior for incorrectly named and missing columns -class FreeAirCorrection(Node): + WGS84 latitude correction + + Accounts for the Earth's elliptical shape and rotation. The gravity value + that would be observed if Earth were a perfect, rotating ellipsoid is + referred to as normal gravity. Gravity increases with increasing latitude. + The correction is added as one moves toward the equator. + + Parameters + ---------- + data_in: DataFrame + trajectory frame containing latitude, longitude, and + height above the ellipsoid + + Returns + ------- + Series + units are mGal + """ + lat = np.deg2rad(data_in['lat'].values) + sin_lat2 = np.sin(lat) ** 2 + num = 1 + np.float(0.00193185265241) * sin_lat2 + den = np.sqrt(1 - np.float(0.00669437999014) * sin_lat2) + corr = -np.float(978032.53359) * num / den + return pd.Series(corr, index=data_in.index, name='lat_corr') + + +def free_air_correction(data_in): """ 2nd order Free Air Correction @@ -201,23 +166,9 @@ class FreeAirCorrection(Node): :class:`Series` units are mGal """ - - nodeName = 'FreeAirCorrection' - - def __init__(self, name): - terminals = { - 'data_in': dict(io='in'), - 'data_out': dict(io='out'), - } - - Node.__init__(self, name, terminals=terminals) - - def process(self, data_in, display=True): - lat = np.deg2rad(data_in['lat'].values) - ht = data_in['ell_ht'].values - sin_lat2 = np.sin(lat) ** 2 - fac = -((np.float(0.3087691) - np.float(0.0004398) * sin_lat2) * - ht) + np.float(7.2125e-8) * (ht ** 2) - return {'data_out': pd.Series(fac, - index=data_in.index, - name='fac')} \ No newline at end of file + lat = np.deg2rad(data_in['lat'].values) + ht = data_in['ell_ht'].values + sin_lat2 = np.sin(lat) ** 2 + fac = -((np.float(0.3087691) - np.float(0.0004398) * sin_lat2) * + ht) + np.float(7.2125e-8) * (ht ** 2) + return pd.Series(fac, index=data_in.index, name='fac') \ No newline at end of file diff --git a/tests/test_transform.py b/tests/test_transform.py new file mode 100644 index 0000000..d35ec37 --- /dev/null +++ b/tests/test_transform.py @@ -0,0 +1,64 @@ +# coding: utf-8 +import pytest + +from dgp.lib.transform.graph import Graph, TransformGraph, GraphError + + +class TestGraph: + @pytest.mark.parametrize('test_input', ['some_string', + [[1, 2], [3], "hello"], + {'a': [1, 2], 'b': 3}, + {'a': [1, 2], 'b': "hello"}, + ]) + def test_init_raises(self, test_input): + pytest.raises(TypeError, Graph(test_input)) + + def test_topo_sort_raises(self): + test_input = {'a': [], + 'b': ['c'], + 'c': ['a', 'b'], + 'd': ['a', 'b', 'c']} + + g = Graph(test_input) + with pytest.raises(GraphError, message='Cycle detected'): + g.topo_sort() + + +def add(a, b): + return a + b + + +class TestTransformGraph: + @pytest.fixture + def test_input(self): + graph = {'a': 1, + 'b': 2, + 'c': (add, 'a', 'b'), + 'd': (sum, ['a', 'b', 'c']) + } + return graph + + def test_init(self, test_input): + g = TransformGraph(test_input) + assert g.order == ['d', 'c', 'b', 'a'] + + def test_execute(self, test_input): + g = TransformGraph(test_input) + res = g.execute() + expected = {'a': 1, 'b': 2, 'c': 3, 'd': 6} + assert res == expected + + def test_graph_setter(self, test_input): + g = TransformGraph(test_input) + g.execute() + new_graph = {'a': 1, + 'b': 2, + 'c': (add, 'a', 'b'), + 'd': (sum, ['a', 'b', 'c']), + 'e': (add, 'd', 'b') + } + g.graph = new_graph + res = g.execute() + expected = {'a': 1, 'b': 2, 'c': 3, 'd': 6, 'e': 8} + + assert res == expected From 9c924df33a1f36c43ec4e6d88fc6e77fbbf2371c Mon Sep 17 00:00:00 2001 From: chris Date: Fri, 2 Mar 2018 15:58:55 -0500 Subject: [PATCH 066/236] Refactoring in TransformGraph --- dgp/lib/transform/graph.py | 28 +++++++++---------- dgp/lib/transform/timeops.py | 40 --------------------------- dgp/lib/transform/transform_graphs.py | 0 3 files changed, 14 insertions(+), 54 deletions(-) delete mode 100644 dgp/lib/transform/timeops.py create mode 100644 dgp/lib/transform/transform_graphs.py diff --git a/dgp/lib/transform/graph.py b/dgp/lib/transform/graph.py index 991cb63..efb7a69 100644 --- a/dgp/lib/transform/graph.py +++ b/dgp/lib/transform/graph.py @@ -11,21 +11,20 @@ def __init__(self, graph, message): class TransformGraph: - # TODO: Use magic methods for math ops where available - - def __init__(self, graph): - self._init_graph(graph) + def __init__(self, graph=None): + if graph is not None: + self.transform_graph = graph + self._init_graph() self._results = None self._graph_changed = True - def _init_graph(self, g): + def _init_graph(self): """ Initialize the transform graph This is an internal method. Do not modify the transform graph in place. Instead, use the setter. """ - self._transform_graph = g self._graph = self._make_graph() self._order = self._graph.topo_sort() @@ -39,11 +38,12 @@ def graph(self): Setter recomputes a topological sorting of the new graph. """ - return self._transform_graph + return self.transform_graph @graph.setter def graph(self, g): - self._init_graph(g) + self.transform_graph = g + self._init_graph() self._graph_changed = True @property @@ -52,10 +52,10 @@ def results(self): return self._results def _make_graph(self): - adjacency_list = {k: [] for k in self._transform_graph} + adjacency_list = {k: [] for k in self.transform_graph} - for k in self._transform_graph: - node = self._transform_graph[k] + for k in self.transform_graph: + node = self.transform_graph[k] if isinstance(node, tuple): args = list(node[1:]) for i in args: @@ -83,19 +83,19 @@ def _tuple_to_func(tup): while order: k = order.pop() - node = self._transform_graph[k] + node = self.transform_graph[k] if isinstance(node, tuple): f = _tuple_to_func(node) results[k] = f() else: - results[k] = self._transform_graph[k] + results[k] = self.transform_graph[k] self._results = results self._graph_changed = False return self._results def __str__(self): - return str(self._transform_graph) + return str(self.transform_graph) class Graph: diff --git a/dgp/lib/transform/timeops.py b/dgp/lib/transform/timeops.py deleted file mode 100644 index 536218b..0000000 --- a/dgp/lib/transform/timeops.py +++ /dev/null @@ -1,40 +0,0 @@ -# coding: utf-8 - -from pyqtgraph.flowchart.library.common import Node -import pandas as pd - -from ..timesync import find_time_delay, shift_frame - - -class ComputeDelay(Node): - nodeName = 'ComputeDelay' - - def __init__(self, name): - terminals = { - 's1': dict(io='in'), - 's2': dict(io='in'), - 'data_out': dict(io='out'), - } - - Node.__init__(self, name, terminals=terminals) - - def process(self, s1, s2, display=True): - delay = find_time_delay(s1, s2) - return {'data_out': delay} - - -class ShiftFrame(Node): - nodeName = 'ShiftFrame' - - def __init__(self, name): - terminals = { - 'frame': dict(io='in'), - 'delay': dict(io='in'), - 'data_out': dict(io='out'), - } - - Node.__init__(self, name, terminals=terminals) - - def process(self, frame, delay, display=True): - shifted = shift_frame(frame, delay) - return {'data_out': shifted} diff --git a/dgp/lib/transform/transform_graphs.py b/dgp/lib/transform/transform_graphs.py new file mode 100644 index 0000000..e69de29 From 0b08f3e63c50cdcd38326e7859dc4516539b2b2b Mon Sep 17 00:00:00 2001 From: chris Date: Fri, 2 Mar 2018 16:08:15 -0500 Subject: [PATCH 067/236] Refactored some in eotvos --- dgp/lib/transform/gravity.py | 57 ++++++++++++++++-------------------- 1 file changed, 26 insertions(+), 31 deletions(-) diff --git a/dgp/lib/transform/gravity.py b/dgp/lib/transform/gravity.py index 9a71479..e8aeefc 100644 --- a/dgp/lib/transform/gravity.py +++ b/dgp/lib/transform/gravity.py @@ -4,10 +4,10 @@ import pandas as pd from numpy import array -from .derivatives import centraldifference +from .derivatives import central_difference -def eotvos_correction(data_in): +def eotvos_correction(data_in, dt): """ Eotvos correction @@ -16,29 +16,24 @@ def eotvos_correction(data_in): data_in: DataFrame trajectory frame containing latitude, longitude, and height above the ellipsoid + dt: float + sample period Returns ------- Series - using the index from the input + index taken from the input """ lat = np.deg2rad(data_in['lat'].values) lon = np.deg2rad(data_in['long'].values) ht = data_in['ell_ht'].values - dlat = centraldifference(lat, n=1, dt=self.dt) - ddlat = centraldifference(lat, n=2, dt=self.dt) - dlon = centraldifference(lon, n=1, dt=self.dt) - ddlon = centraldifference(lon, n=2, dt=self.dt) - dht = centraldifference(ht, n=1, dt=self.dt) - ddht = centraldifference(ht, n=2, dt=self.dt) - - # dlat = gradient(lat) - # ddlat = gradient(dlat) - # dlon = gradient(lon) - # ddlon = gradient(dlon) - # dht = gradient(ht) - # ddht = gradient(dht) + dlat = central_difference(lat, n=1, dt=dt) + ddlat = central_difference(lat, n=2, dt=dt) + dlon = central_difference(lon, n=1, dt=dt) + ddlon = central_difference(lon, n=2, dt=dt) + dht = central_difference(ht, n=1, dt=dt) + ddht = central_difference(ht, n=2, dt=dt) sin_lat = np.sin(lat) cos_lat = np.cos(lat) @@ -46,16 +41,16 @@ def eotvos_correction(data_in): cos_2lat = np.cos(2.0 * lat) # Calculate the r' and its derivatives - r_prime = self.a * (1.0 - self.ecc * sin_lat * sin_lat) - dr_prime = -self.a * dlat * self.ecc * sin_2lat - ddr_prime = (-self.a * ddlat * self.ecc * sin_2lat - 2.0 * self.a * - dlat * dlat * self.ecc * cos_2lat) + r_prime = a * (1.0 - ecc * sin_lat * sin_lat) + dr_prime = -a * dlat * ecc * sin_2lat + ddr_prime = (-a * ddlat * ecc * sin_2lat - 2.0 * a * + dlat * dlat * ecc * cos_2lat) # Calculate the deviation from the normal and its derivatives - D = np.arctan(self.ecc * sin_2lat) - dD = 2.0 * dlat * self.ecc * cos_2lat - ddD = (2.0 * ddlat * self.ecc * cos_2lat - 4.0 * dlat * dlat * - self.ecc * sin_2lat) + D = np.arctan(ecc * sin_2lat) + dD = 2.0 * dlat * ecc * cos_2lat + ddD = (2.0 * ddlat * ecc * cos_2lat - 4.0 * dlat * dlat * + ecc * sin_2lat) # Calculate this value once (used many times) sinD = np.sin(D) @@ -86,15 +81,15 @@ def eotvos_correction(data_in): # Define w and its derivative w = array([ - (dlon + self.We) * cos_lat, + (dlon + We) * cos_lat, -dlat, - (-(dlon + self.We)) * sin_lat + (-(dlon + We)) * sin_lat ]) wdot = array([ - dlon * cos_lat - (dlon + self.We) * dlat * sin_lat, + dlon * cos_lat - (dlon + We) * dlat * sin_lat, -ddlat, - (-ddlon * sin_lat - (dlon + self.We) * dlat * cos_lat) + (-ddlon * sin_lat - (dlon + We) * dlat * cos_lat) ]) w2_x_rdot = np.cross(2.0 * w, rdot, axis=0) @@ -103,9 +98,9 @@ def eotvos_correction(data_in): wxwxr = np.cross(w, w_x_r, axis=0) we = array([ - self.We * cos_lat, + We * cos_lat, np.zeros(sin_lat.shape), - -self.We * sin_lat + -We * sin_lat ]) wexr = np.cross(we, r, axis=0) @@ -114,7 +109,7 @@ def eotvos_correction(data_in): # Calculate total acceleration for the aircraft acc = r2dot + w2_x_rdot + wdot_x_r + wxwxr - E = (acc[2] - wexwexr[2]) * self.mps2mgal + E = (acc[2] - wexwexr[2]) * mps2mgal return pd.Series(E, index=data_in.index, name='eotvos') From c53db85d5b6b667e6caa45fecee72319ed94e5fb Mon Sep 17 00:00:00 2001 From: chris Date: Fri, 2 Mar 2018 16:08:33 -0500 Subject: [PATCH 068/236] Added tests for TranformGraph subclassing --- tests/test_transform.py | 30 +++++++++++++++++++++++++++--- 1 file changed, 27 insertions(+), 3 deletions(-) diff --git a/tests/test_transform.py b/tests/test_transform.py index d35ec37..863de20 100644 --- a/tests/test_transform.py +++ b/tests/test_transform.py @@ -39,17 +39,17 @@ def test_input(self): return graph def test_init(self, test_input): - g = TransformGraph(test_input) + g = TransformGraph(graph=test_input) assert g.order == ['d', 'c', 'b', 'a'] def test_execute(self, test_input): - g = TransformGraph(test_input) + g = TransformGraph(graph=test_input) res = g.execute() expected = {'a': 1, 'b': 2, 'c': 3, 'd': 6} assert res == expected def test_graph_setter(self, test_input): - g = TransformGraph(test_input) + g = TransformGraph(graph=test_input) g.execute() new_graph = {'a': 1, 'b': 2, @@ -62,3 +62,27 @@ def test_graph_setter(self, test_input): expected = {'a': 1, 'b': 2, 'c': 3, 'd': 6, 'e': 8} assert res == expected + + def test_subclass_noargs(self, test_input): + class NewTransformGraph(TransformGraph): + transform_graph = test_input + + g = NewTransformGraph() + res = g.execute() + expected = {'a': 1, 'b': 2, 'c': 3, 'd': 6} + assert res == expected + + def test_subclass_args(self): + class NewTransformGraph(TransformGraph): + def __init__(self, in1, in2): + self.transform_graph = {'a': in1, + 'b': in2, + 'c': (add, 'a', 'b'), + 'd': (sum, ['a', 'b', 'c']) + } + super().__init__() + + g = NewTransformGraph(1, 2) + res = g.execute() + expected = {'a': 1, 'b': 2, 'c': 3, 'd': 6} + assert res == expected From 69e1affefbfd6f72f5d3c9a743f4b9839d4d4028 Mon Sep 17 00:00:00 2001 From: chris Date: Fri, 2 Mar 2018 16:09:04 -0500 Subject: [PATCH 069/236] Added sample period parameter for eotvos --- dgp/lib/transform/transform_graphs.py | 18 ++++++++++++++++++ 1 file changed, 18 insertions(+) diff --git a/dgp/lib/transform/transform_graphs.py b/dgp/lib/transform/transform_graphs.py index e69de29..46f953e 100644 --- a/dgp/lib/transform/transform_graphs.py +++ b/dgp/lib/transform/transform_graphs.py @@ -0,0 +1,18 @@ +# coding: utf-8 + +from .graph import TransformGraph +from .gravity import eotvos_correction, latitude_correction, free_air_correction + + +class StandardGravityGraph(TransformGraph): + def __init__(self, gravity, trajectory): + graph = {'gravity': gravity, + 'trajectory': trajectory, + 'dt': 0.1, + 'eotvos': (eotvos_correction, 'trajectory', 'dt'), + 'lat_corr': (latitude_correction, 'trajectory'), + 'fac': (free_air_correction, 'trajectory'), + 'total_corr': (sum, ['eotvos', 'lat_corr', 'fac']) + } + + super(StandardGravityGraph, self).__init__(graph) \ No newline at end of file From 9529b4b1b830dd1e7f31ed8ec699699f85e4e8dd Mon Sep 17 00:00:00 2001 From: chris Date: Sat, 3 Mar 2018 12:44:33 -0500 Subject: [PATCH 070/236] Added test for eotvos and fixed some bugs --- dgp/lib/transform/derivatives.py | 3 +- dgp/lib/transform/graph.py | 9 +-- dgp/lib/transform/gravity.py | 18 +++-- dgp/lib/transform/operators.py | 75 +-------------------- dgp/lib/transform/transform_graphs.py | 21 +++--- tests/test_transform.py | 95 +++++++++++++++++++++++++++ 6 files changed, 128 insertions(+), 93 deletions(-) diff --git a/dgp/lib/transform/derivatives.py b/dgp/lib/transform/derivatives.py index 932a376..31678cf 100644 --- a/dgp/lib/transform/derivatives.py +++ b/dgp/lib/transform/derivatives.py @@ -17,7 +17,8 @@ def central_difference(data_in, n=1, order=2, dt=0.1): else: raise NotImplementedError - return np.pad(dy, (1, 1), 'edge') + # return np.pad(dy, (1, 1), 'edge') + return dy def gradient(data_in, dt=0.1): diff --git a/dgp/lib/transform/graph.py b/dgp/lib/transform/graph.py index efb7a69..807e3c0 100644 --- a/dgp/lib/transform/graph.py +++ b/dgp/lib/transform/graph.py @@ -57,9 +57,11 @@ def _make_graph(self): for k in self.transform_graph: node = self.transform_graph[k] if isinstance(node, tuple): - args = list(node[1:]) - for i in args: - adjacency_list[k] += list(i) + for x in node[1:]: + if isinstance(x, str): + adjacency_list[k].append(x) + else: + adjacency_list[k] += x return Graph(adjacency_list) def execute(self): @@ -78,7 +80,6 @@ def _tuple_to_func(tup): else: args.append(results[arg]) new_tup = tuple([func] + args) - print(new_tup) return partial(*new_tup) while order: diff --git a/dgp/lib/transform/gravity.py b/dgp/lib/transform/gravity.py index e8aeefc..78c0391 100644 --- a/dgp/lib/transform/gravity.py +++ b/dgp/lib/transform/gravity.py @@ -7,7 +7,7 @@ from .derivatives import central_difference -def eotvos_correction(data_in, dt): +def eotvos_correction(data_in): """ Eotvos correction @@ -24,9 +24,18 @@ def eotvos_correction(data_in, dt): Series index taken from the input """ - lat = np.deg2rad(data_in['lat'].values) - lon = np.deg2rad(data_in['long'].values) - ht = data_in['ell_ht'].values + + # constants + a = 6378137.0 # Default semi-major axis + b = 6356752.3142 # Default semi-minor axis + ecc = (a - b) / a # Eccentricity + We = 0.00007292115 # sidereal rotation rate, radians/sec + mps2mgal = 100000 # m/s/s to mgal + dt = 0.1 + + lat = np.deg2rad(data_in['lat']) + lon = np.deg2rad(data_in['long']) + ht = data_in['ell_ht'] dlat = central_difference(lat, n=1, dt=dt) ddlat = central_difference(lat, n=2, dt=dt) @@ -113,7 +122,6 @@ def eotvos_correction(data_in, dt): return pd.Series(E, index=data_in.index, name='eotvos') - def latitude_correction(data_in): """ WGS84 latitude correction diff --git a/dgp/lib/transform/operators.py b/dgp/lib/transform/operators.py index 2995be8..ab62c21 100644 --- a/dgp/lib/transform/operators.py +++ b/dgp/lib/transform/operators.py @@ -1,77 +1,8 @@ # coding: utf-8 -from pyqtgraph.flowchart.library.common import Node, CtrlNode - import pandas as pd +from functools import partial -class ScalarMultiply(CtrlNode): - nodeName = 'ScalarMultiply' - uiTemplate = [ - ('multiplier', 'spin', {'value': 1, 'step': 1, 'bounds': [None, None]}), - ] - - def __init__(self, name): - terminals = { - 'data_in': dict(io='in'), - 'data_out': dict(io='out'), - } - - CtrlNode.__init__(self, name, terminals=terminals) - - def process(self, data_in, display=True): - result = data_in * self.ctrls['multiplier'].value() - return {'data_out': result} - - -# TODO: Consider how to do this for an undefined number of inputs -class ConcatenateSeries(Node): - nodeName = 'ConcatenateSeries' - - def __init__(self, name): - terminals = { - 'A': dict(io='in'), - 'B': dict(io='in'), - 'data_out': dict(io='out'), - } - - Node.__init__(self, name, terminals=terminals) - - def process(self, A, B, display=True): - result = pd.concat([A, B], join='outer', axis=1) - return {'data_out': result} - - -class AddSeries(CtrlNode): - nodeName = 'AddSeries' - uiTemplate = [ - ('A multiplier', 'spin', {'value': 1, 'step': 1, 'bounds': [None, None]}), - ('B multiplier', 'spin', {'value': 1, 'step': 1, 'bounds': [None, None]}), - ] - - def __init__(self, name): - terminals = { - 'A': dict(io='in'), - 'B': dict(io='in'), - 'data_out': dict(io='out'), - } - - CtrlNode.__init__(self, name, terminals=terminals) - - def process(self, A, B, display=True): - if not isinstance(A, pd.Series): - raise TypeError('Input A is not a Series, got {typ}' - .format(typ=type(A))) - if not isinstance(B, pd.Series): - raise TypeError('Input B is not a Series, got {typ}' - .format(typ=type(B))) - - if A.shape != B.shape: - raise ValueError('Shape of A is {ashape} and shape of ' - 'B is {bshape}'.format(ashape=A.shape, - bshape=B.shape)) - a = self.ctrls['A multiplier'].value() - b = self.ctrls['B multiplier'].value() - - result = a * A + b * B - return {'data_out': result} \ No newline at end of file +def concat(): + return partial(pd.concat, join='outer', axis=1) diff --git a/dgp/lib/transform/transform_graphs.py b/dgp/lib/transform/transform_graphs.py index 46f953e..1854be4 100644 --- a/dgp/lib/transform/transform_graphs.py +++ b/dgp/lib/transform/transform_graphs.py @@ -2,17 +2,16 @@ from .graph import TransformGraph from .gravity import eotvos_correction, latitude_correction, free_air_correction +from .operators import concat class StandardGravityGraph(TransformGraph): - def __init__(self, gravity, trajectory): - graph = {'gravity': gravity, - 'trajectory': trajectory, - 'dt': 0.1, - 'eotvos': (eotvos_correction, 'trajectory', 'dt'), - 'lat_corr': (latitude_correction, 'trajectory'), - 'fac': (free_air_correction, 'trajectory'), - 'total_corr': (sum, ['eotvos', 'lat_corr', 'fac']) - } - - super(StandardGravityGraph, self).__init__(graph) \ No newline at end of file + def __init__(self, trajectory): + self.transform_graph = {'trajectory': trajectory, + 'eotvos': (eotvos_correction, 'trajectory'), + 'lat_corr': (latitude_correction, 'trajectory'), + 'fac': (free_air_correction, 'trajectory'), + 'total_corr': (sum, ['eotvos', 'lat_corr', 'fac']), + 'new_frame': (concat, ['eotvos', 'lat_corr', 'fac', 'total_corr']) + } + super().__init__() diff --git a/tests/test_transform.py b/tests/test_transform.py index 863de20..05244b7 100644 --- a/tests/test_transform.py +++ b/tests/test_transform.py @@ -1,7 +1,15 @@ # coding: utf-8 import pytest +from nose.tools import assert_almost_equals from dgp.lib.transform.graph import Graph, TransformGraph, GraphError +from dgp.lib.transform.gravity import eotvos_correction, latitude_correction, free_air_correction +from dgp.lib.transform.operators import concat +import dgp.lib.trajectory_ingestor as ti + + +from tests import sample_dir +import csv class TestGraph: @@ -86,3 +94,90 @@ def __init__(self, in1, in2): res = g.execute() expected = {'a': 1, 'b': 2, 'c': 3, 'd': 6} assert res == expected + + +class TestCorrections: + @pytest.fixture + def trajectory_data(self): + # Ensure gps_fields are ordered correctly relative to test file + gps_fields = ['mdy', 'hms', 'lat', 'long', 'ortho_ht', 'ell_ht', + 'num_stats', 'pdop'] + data = ti.import_trajectory( + 'tests/sample_data/eotvos_short_input.txt', + columns=gps_fields, + skiprows=1, + timeformat='hms' + ) + + return data + + def test_eotvos_node(self, trajectory_data): + # TODO: More complete test that spans the range of possible inputs + result_eotvos = [] + with sample_dir.joinpath('eotvos_short_result.csv').open() as fd: + test_data = csv.DictReader(fd) + for line in test_data: + result_eotvos.append(float(line['Eotvos_full'])) + + transform_graph = {'trajectory': trajectory_data, + 'eotvos': (eotvos_correction, 'trajectory'), + } + g = TransformGraph(graph=transform_graph) + eotvos_a = g.execute() + + for i, value in enumerate(eotvos_a): + if 1 < i < len(result_eotvos) - 2: + try: + assert_almost_equals(value, result_eotvos[i], places=2) + except AssertionError: + print("Invalid assertion at data line: {}".format(i)) + raise AssertionError + + # def test_free_air_correction(self): + # # TODO: More complete test that spans the range of possible inputs + # s1 = pd.Series([39.9148595446, 39.9148624273], name='lat') + # s2 = pd.Series([1599.197, 1599.147], name='ell_ht') + # test_input = pd.concat([s1, s2], axis=1) + # test_input.index = pd.Index([self.data.index[0], self.data.index[-1]]) + # + # expected = pd.Series([-493.308594971815, -493.293177069581], + # index=pd.Index([self.data.index[0], + # self.data.index[-1]]), + # name='fac' + # ) + # + # fnode = self.fc.createNode('FreeAirCorrection', pos=(0, 0)) + # self.fc.connectTerminals(self.fc['data_in'], fnode['data_in']) + # self.fc.connectTerminals(fnode['data_out'], self.fc['data_out']) + # + # result = self.fc.process(data_in=test_input) + # res = result['data_out'] + # + # np.testing.assert_array_almost_equal(expected, res, decimal=8) + # + # # check that the indices are equal + # self.assertTrue(test_input.index.identical(res.index)) + # + # def test_latitude_correction(self): + # test_input = pd.DataFrame([39.9148595446, 39.9148624273]) + # test_input.columns = ['lat'] + # test_input.index = pd.Index([self.data.index[0], self.data.index[-1]]) + # + # expected = pd.Series([-980162.105035777, -980162.105292394], + # index=pd.Index([self.data.index[0], + # self.data.index[-1]]), + # name='lat_corr' + # ) + # + # fnode = self.fc.createNode('LatitudeCorrection', pos=(0, 0)) + # self.fc.connectTerminals(self.fc['data_in'], fnode['data_in']) + # self.fc.connectTerminals(fnode['data_out'], self.fc['data_out']) + # + # result = self.fc.process(data_in=test_input) + # res = result['data_out'] + # + # np.testing.assert_array_almost_equal(expected, res, decimal=8) + # + # # check that the indexes are equal + # self.assertTrue(test_input.index.identical(res.index)) + From 1c0a3c45e8de7493b358615cd2ed713ae0f0474f Mon Sep 17 00:00:00 2001 From: chris Date: Sat, 3 Mar 2018 13:18:31 -0500 Subject: [PATCH 071/236] Added test for free air correction and fixed test for eotvos --- dgp/lib/transform/derivatives.py | 3 +- dgp/lib/transform/gravity.py | 6 ++-- tests/test_transform.py | 55 ++++++++++++++++---------------- 3 files changed, 31 insertions(+), 33 deletions(-) diff --git a/dgp/lib/transform/derivatives.py b/dgp/lib/transform/derivatives.py index 31678cf..932a376 100644 --- a/dgp/lib/transform/derivatives.py +++ b/dgp/lib/transform/derivatives.py @@ -17,8 +17,7 @@ def central_difference(data_in, n=1, order=2, dt=0.1): else: raise NotImplementedError - # return np.pad(dy, (1, 1), 'edge') - return dy + return np.pad(dy, (1, 1), 'edge') def gradient(data_in, dt=0.1): diff --git a/dgp/lib/transform/gravity.py b/dgp/lib/transform/gravity.py index 78c0391..e1ba4e4 100644 --- a/dgp/lib/transform/gravity.py +++ b/dgp/lib/transform/gravity.py @@ -33,9 +33,9 @@ def eotvos_correction(data_in): mps2mgal = 100000 # m/s/s to mgal dt = 0.1 - lat = np.deg2rad(data_in['lat']) - lon = np.deg2rad(data_in['long']) - ht = data_in['ell_ht'] + lat = np.deg2rad(data_in['lat'].values) + lon = np.deg2rad(data_in['long'].values) + ht = data_in['ell_ht'].values dlat = central_difference(lat, n=1, dt=dt) ddlat = central_difference(lat, n=2, dt=dt) diff --git a/tests/test_transform.py b/tests/test_transform.py index 05244b7..8c8b788 100644 --- a/tests/test_transform.py +++ b/tests/test_transform.py @@ -1,13 +1,14 @@ # coding: utf-8 import pytest from nose.tools import assert_almost_equals +import pandas as pd +import numpy as np from dgp.lib.transform.graph import Graph, TransformGraph, GraphError from dgp.lib.transform.gravity import eotvos_correction, latitude_correction, free_air_correction from dgp.lib.transform.operators import concat import dgp.lib.trajectory_ingestor as ti - from tests import sample_dir import csv @@ -111,7 +112,7 @@ def trajectory_data(self): return data - def test_eotvos_node(self, trajectory_data): + def test_eotvos(self, trajectory_data): # TODO: More complete test that spans the range of possible inputs result_eotvos = [] with sample_dir.joinpath('eotvos_short_result.csv').open() as fd: @@ -125,7 +126,7 @@ def test_eotvos_node(self, trajectory_data): g = TransformGraph(graph=transform_graph) eotvos_a = g.execute() - for i, value in enumerate(eotvos_a): + for i, value in enumerate(eotvos_a['eotvos']): if 1 < i < len(result_eotvos) - 2: try: assert_almost_equals(value, result_eotvos[i], places=2) @@ -133,31 +134,29 @@ def test_eotvos_node(self, trajectory_data): print("Invalid assertion at data line: {}".format(i)) raise AssertionError - # def test_free_air_correction(self): - # # TODO: More complete test that spans the range of possible inputs - # s1 = pd.Series([39.9148595446, 39.9148624273], name='lat') - # s2 = pd.Series([1599.197, 1599.147], name='ell_ht') - # test_input = pd.concat([s1, s2], axis=1) - # test_input.index = pd.Index([self.data.index[0], self.data.index[-1]]) - # - # expected = pd.Series([-493.308594971815, -493.293177069581], - # index=pd.Index([self.data.index[0], - # self.data.index[-1]]), - # name='fac' - # ) - # - # fnode = self.fc.createNode('FreeAirCorrection', pos=(0, 0)) - # self.fc.connectTerminals(self.fc['data_in'], fnode['data_in']) - # self.fc.connectTerminals(fnode['data_out'], self.fc['data_out']) - # - # result = self.fc.process(data_in=test_input) - # res = result['data_out'] - # - # np.testing.assert_array_almost_equal(expected, res, decimal=8) - # - # # check that the indices are equal - # self.assertTrue(test_input.index.identical(res.index)) - # + def test_free_air_correction(self, trajectory_data): + # TODO: More complete test that spans the range of possible inputs + s1 = pd.Series([39.9148595446, 39.9148624273], name='lat') + s2 = pd.Series([1599.197, 1599.147], name='ell_ht') + test_input = pd.concat([s1, s2], axis=1) + test_input.index = pd.Index([trajectory_data.index[0], trajectory_data.index[-1]]) + + expected = pd.Series([-493.308594971815, -493.293177069581], + index=pd.Index([trajectory_data.index[0], + trajectory_data.index[-1]]), + name='fac' + ) + + transform_graph = {'trajectory': test_input, + 'fac': (free_air_correction, 'trajectory'), + } + g = TransformGraph(graph=transform_graph) + res = g.execute() + np.testing.assert_array_almost_equal(expected, res['fac'], decimal=8) + + # check that the indices are equal + assert test_input.index.identical(res['fac'].index) + # def test_latitude_correction(self): # test_input = pd.DataFrame([39.9148595446, 39.9148624273]) # test_input.columns = ['lat'] From 6f283ea6bf36aba62d9fcd80be1008b0d688be50 Mon Sep 17 00:00:00 2001 From: chris Date: Sat, 3 Mar 2018 13:21:12 -0500 Subject: [PATCH 072/236] Added latitude correction --- tests/test_transform.py | 43 ++++++++++++++++++++--------------------- 1 file changed, 21 insertions(+), 22 deletions(-) diff --git a/tests/test_transform.py b/tests/test_transform.py index 8c8b788..3802989 100644 --- a/tests/test_transform.py +++ b/tests/test_transform.py @@ -157,26 +157,25 @@ def test_free_air_correction(self, trajectory_data): # check that the indices are equal assert test_input.index.identical(res['fac'].index) - # def test_latitude_correction(self): - # test_input = pd.DataFrame([39.9148595446, 39.9148624273]) - # test_input.columns = ['lat'] - # test_input.index = pd.Index([self.data.index[0], self.data.index[-1]]) - # - # expected = pd.Series([-980162.105035777, -980162.105292394], - # index=pd.Index([self.data.index[0], - # self.data.index[-1]]), - # name='lat_corr' - # ) - # - # fnode = self.fc.createNode('LatitudeCorrection', pos=(0, 0)) - # self.fc.connectTerminals(self.fc['data_in'], fnode['data_in']) - # self.fc.connectTerminals(fnode['data_out'], self.fc['data_out']) - # - # result = self.fc.process(data_in=test_input) - # res = result['data_out'] - # - # np.testing.assert_array_almost_equal(expected, res, decimal=8) - # - # # check that the indexes are equal - # self.assertTrue(test_input.index.identical(res.index)) + def test_latitude_correction(self, trajectory_data): + test_input = pd.DataFrame([39.9148595446, 39.9148624273]) + test_input.columns = ['lat'] + test_input.index = pd.Index([trajectory_data.index[0], trajectory_data.index[-1]]) + + expected = pd.Series([-980162.105035777, -980162.105292394], + index=pd.Index([trajectory_data.index[0], + trajectory_data.index[-1]]), + name='lat_corr' + ) + + transform_graph = {'trajectory': test_input, + 'lat_corr': (latitude_correction, 'trajectory'), + } + g = TransformGraph(graph=transform_graph) + res = g.execute() + + np.testing.assert_array_almost_equal(expected, res['lat_corr'], decimal=8) + + # check that the indexes are equal + assert test_input.index.identical(res['lat_corr'].index) From d66019ec2a48f0a8fd5e9dc0b71eec06de34ff29 Mon Sep 17 00:00:00 2001 From: chris Date: Mon, 5 Mar 2018 08:25:30 -0500 Subject: [PATCH 073/236] Added test for use of partial in graph --- tests/test_transform.py | 23 ++++++++++++++++++++++- 1 file changed, 22 insertions(+), 1 deletion(-) diff --git a/tests/test_transform.py b/tests/test_transform.py index 3802989..da7ab8c 100644 --- a/tests/test_transform.py +++ b/tests/test_transform.py @@ -3,10 +3,10 @@ from nose.tools import assert_almost_equals import pandas as pd import numpy as np +from functools import partial from dgp.lib.transform.graph import Graph, TransformGraph, GraphError from dgp.lib.transform.gravity import eotvos_correction, latitude_correction, free_air_correction -from dgp.lib.transform.operators import concat import dgp.lib.trajectory_ingestor as ti from tests import sample_dir @@ -179,3 +179,24 @@ def test_latitude_correction(self, trajectory_data): # check that the indexes are equal assert test_input.index.identical(res['lat_corr'].index) + def test_partial(self): + input_A = pd.Series(np.arange(0, 5), index=['A', 'B', 'C', 'D', 'E']) + input_B = pd.Series(np.arange(2, 7), index=['A', 'B', 'C', 'D', 'E']) + expected = pd.concat([input_A, input_B], axis=1) + + concat = partial(pd.concat, join='outer', axis=1) + + transform_graph = {'input_a': input_A, + 'input_b': input_B, + 'result': (concat, ['input_a', 'input_b']) + } + g = TransformGraph(graph=transform_graph) + result = g.execute() + res = result['result'] + + assert res.equals(expected) + + # check that the indexes are equal + assert input_A.index.identical(res.index) + assert input_B.index.identical(res.index) + From 1370c382b1affec2fbcb46767f0f4178e57aabf6 Mon Sep 17 00:00:00 2001 From: chris Date: Mon, 5 Mar 2018 11:11:54 -0500 Subject: [PATCH 074/236] Added test for standard graph --- dgp/lib/transform/operators.py | 5 +++-- dgp/lib/transform/transform_graphs.py | 13 ++++++++++--- tests/test_transform.py | 14 ++++++++++++++ 3 files changed, 27 insertions(+), 5 deletions(-) diff --git a/dgp/lib/transform/operators.py b/dgp/lib/transform/operators.py index ab62c21..e0b0ff2 100644 --- a/dgp/lib/transform/operators.py +++ b/dgp/lib/transform/operators.py @@ -4,5 +4,6 @@ from functools import partial -def concat(): - return partial(pd.concat, join='outer', axis=1) +def named_series(name): + return partial(pd.Series, name=name) + diff --git a/dgp/lib/transform/transform_graphs.py b/dgp/lib/transform/transform_graphs.py index 1854be4..d7e1f45 100644 --- a/dgp/lib/transform/transform_graphs.py +++ b/dgp/lib/transform/transform_graphs.py @@ -1,17 +1,24 @@ # coding: utf-8 +from functools import partial +import pandas as pd from .graph import TransformGraph from .gravity import eotvos_correction, latitude_correction, free_air_correction -from .operators import concat class StandardGravityGraph(TransformGraph): + + concat = partial(pd.concat, axis=1, join='outer') + + def total_corr(self, *args): + return pd.Series(sum(*args), name='total_corr') + def __init__(self, trajectory): self.transform_graph = {'trajectory': trajectory, 'eotvos': (eotvos_correction, 'trajectory'), 'lat_corr': (latitude_correction, 'trajectory'), 'fac': (free_air_correction, 'trajectory'), - 'total_corr': (sum, ['eotvos', 'lat_corr', 'fac']), - 'new_frame': (concat, ['eotvos', 'lat_corr', 'fac', 'total_corr']) + 'total_corr': (self.total_corr, ['eotvos', 'lat_corr', 'fac']), + 'new_frame': (self.concat, ['eotvos', 'lat_corr', 'fac', 'total_corr']) } super().__init__() diff --git a/tests/test_transform.py b/tests/test_transform.py index da7ab8c..aee2b51 100644 --- a/tests/test_transform.py +++ b/tests/test_transform.py @@ -7,6 +7,7 @@ from dgp.lib.transform.graph import Graph, TransformGraph, GraphError from dgp.lib.transform.gravity import eotvos_correction, latitude_correction, free_air_correction +from dgp.lib.transform.transform_graphs import StandardGravityGraph import dgp.lib.trajectory_ingestor as ti from tests import sample_dir @@ -200,3 +201,16 @@ def test_partial(self): assert input_A.index.identical(res.index) assert input_B.index.identical(res.index) + def test_standard_graph(self, trajectory_data): + exp_eotvos = eotvos_correction(trajectory_data) + exp_lat_corr = latitude_correction(trajectory_data) + exp_fac = free_air_correction(trajectory_data) + exp_total = pd.Series(sum([exp_eotvos, exp_lat_corr, exp_fac]), name='total_corr') + + expected_frame = pd.concat([exp_eotvos, exp_lat_corr, exp_fac, exp_total], + axis=1, + join='outer') + g = StandardGravityGraph(trajectory_data) + res = g.execute() + + assert res['new_frame'].equals(expected_frame) From 83dc2490759de57479d3c11fc94085d9825126c1 Mon Sep 17 00:00:00 2001 From: chris Date: Tue, 6 Mar 2018 14:36:49 -0500 Subject: [PATCH 075/236] Added run method to TransformGraph --- dgp/lib/transform/{operators.py => etc.py} | 0 dgp/lib/transform/graph.py | 27 +++++++++++++++++++ tests/test_transform.py | 31 +++++++++++++--------- 3 files changed, 46 insertions(+), 12 deletions(-) rename dgp/lib/transform/{operators.py => etc.py} (100%) diff --git a/dgp/lib/transform/operators.py b/dgp/lib/transform/etc.py similarity index 100% rename from dgp/lib/transform/operators.py rename to dgp/lib/transform/etc.py diff --git a/dgp/lib/transform/graph.py b/dgp/lib/transform/graph.py index 807e3c0..ce399ba 100644 --- a/dgp/lib/transform/graph.py +++ b/dgp/lib/transform/graph.py @@ -18,6 +18,33 @@ def __init__(self, graph=None): self._results = None self._graph_changed = True + @classmethod + def run(cls, *args, item=None): + """ + Use the graph as a node in another graph + + Parameters + ---------- + *args + arguments to pass to graph initializer + + item: str or list of str + keys of the results graph to be returned + + Returns + ------- + Function whose output is the result of the graph according to the + keys specified + """ + def func(*args): + c = cls(*args) + results = c.execute() + if item is None: + return results + else: + return results[item] + return func + def _init_graph(self): """ Initialize the transform graph diff --git a/tests/test_transform.py b/tests/test_transform.py index aee2b51..b0ef6e0 100644 --- a/tests/test_transform.py +++ b/tests/test_transform.py @@ -7,7 +7,6 @@ from dgp.lib.transform.graph import Graph, TransformGraph, GraphError from dgp.lib.transform.gravity import eotvos_correction, latitude_correction, free_air_correction -from dgp.lib.transform.transform_graphs import StandardGravityGraph import dgp.lib.trajectory_ingestor as ti from tests import sample_dir @@ -201,16 +200,24 @@ def test_partial(self): assert input_A.index.identical(res.index) assert input_B.index.identical(res.index) - def test_standard_graph(self, trajectory_data): - exp_eotvos = eotvos_correction(trajectory_data) - exp_lat_corr = latitude_correction(trajectory_data) - exp_fac = free_air_correction(trajectory_data) - exp_total = pd.Series(sum([exp_eotvos, exp_lat_corr, exp_fac]), name='total_corr') + def test_graph_chaining(self): - expected_frame = pd.concat([exp_eotvos, exp_lat_corr, exp_fac, exp_total], - axis=1, - join='outer') - g = StandardGravityGraph(trajectory_data) - res = g.execute() + class Graph1(TransformGraph): + def __init__(self, in1, in2): + self.transform_graph = {'a': in1, + 'b': in2, + 'c': (add, 'a', 'b'), + } + super().__init__() + + graph2 = {'a': 1, + 'b': 2, + 'c': (Graph1.run(item='c'), 'a', 'b'), + 'd': (sum, ['a', 'b', 'c']) + } + g = TransformGraph(graph=graph2) + result = g.execute() + expected = {'a': 1, 'b': 2, 'c': 3, 'd': 6} + + assert result == expected - assert res['new_frame'].equals(expected_frame) From 3ad91837a4fe4ca29fa98a127563899bbc8a3179 Mon Sep 17 00:00:00 2001 From: chris Date: Tue, 6 Mar 2018 14:37:52 -0500 Subject: [PATCH 076/236] TODO in interp_nans --- dgp/lib/etc.py | 1 + 1 file changed, 1 insertion(+) diff --git a/dgp/lib/etc.py b/dgp/lib/etc.py index 4730ff1..f98592e 100644 --- a/dgp/lib/etc.py +++ b/dgp/lib/etc.py @@ -132,6 +132,7 @@ def fill_nans(frame): def interp_nans(y): + # TODO: SettingWithCopyWarning nans = np.isnan(y) x = lambda z: z.nonzero()[0] y[nans] = np.interp(x(nans), x(~nans), y[~nans]) From c6ca8791fdc524eb1370f82e36c05cb33fe9c288 Mon Sep 17 00:00:00 2001 From: chris Date: Tue, 6 Mar 2018 14:39:20 -0500 Subject: [PATCH 077/236] Added AirbornePost graph and removed standard gravity graph --- dgp/lib/transform/etc.py | 7 ++++--- dgp/lib/transform/filters.py | 7 ++----- dgp/lib/transform/transform_graphs.py | 29 +++++++++++++++++++++++---- 3 files changed, 31 insertions(+), 12 deletions(-) diff --git a/dgp/lib/transform/etc.py b/dgp/lib/transform/etc.py index e0b0ff2..f796ada 100644 --- a/dgp/lib/transform/etc.py +++ b/dgp/lib/transform/etc.py @@ -1,9 +1,10 @@ # coding: utf-8 import pandas as pd -from functools import partial -def named_series(name): - return partial(pd.Series, name=name) +def named_series(*args, **kwargs): + def wrapper(*args, **kwargs): + return pd.Series(*args, **kwargs) + return wrapper diff --git a/dgp/lib/transform/filters.py b/dgp/lib/transform/filters.py index a5b167c..0302258 100644 --- a/dgp/lib/transform/filters.py +++ b/dgp/lib/transform/filters.py @@ -1,14 +1,11 @@ # coding: utf-8 -from pyqtgraph.Qt import QtWidgets -from pyqtgraph.flowchart.library.common import CtrlNode - from scipy import signal import pandas as pd import numpy as np -def lp_filter(data_in, filter_len, fs): +def lp_filter(data_in, filter_len=100, fs=0.1): fc = 1 / filter_len nyq = fs / 2 wn = fc / nyq @@ -32,4 +29,4 @@ def detrend(data_in, begin, end): result = data_in.sub(trend, axis=0) else: result = data_in - trend - return {'data_out': result} + return result diff --git a/dgp/lib/transform/transform_graphs.py b/dgp/lib/transform/transform_graphs.py index d7e1f45..72e15d1 100644 --- a/dgp/lib/transform/transform_graphs.py +++ b/dgp/lib/transform/transform_graphs.py @@ -3,22 +3,43 @@ import pandas as pd from .graph import TransformGraph -from .gravity import eotvos_correction, latitude_correction, free_air_correction +from .gravity import (eotvos_correction, latitude_correction, + free_air_correction) +from.filters import lp_filter, detrend -class StandardGravityGraph(TransformGraph): +class AirbornePost(TransformGraph): concat = partial(pd.concat, axis=1, join='outer') def total_corr(self, *args): return pd.Series(sum(*args), name='total_corr') - def __init__(self, trajectory): + def mult(self, a, b): + return pd.Series(a * b, name='abs_grav') + + def corrected_grav(self, *args): + return pd.Series(sum(*args), name='corrected_grav') + + def __init__(self, trajectory, gravity, begin_static, end_static, tie): + self.begin_static = begin_static + self.end_static = end_static + self.gravity_tie = tie self.transform_graph = {'trajectory': trajectory, + 'gravity': gravity, 'eotvos': (eotvos_correction, 'trajectory'), 'lat_corr': (latitude_correction, 'trajectory'), 'fac': (free_air_correction, 'trajectory'), 'total_corr': (self.total_corr, ['eotvos', 'lat_corr', 'fac']), - 'new_frame': (self.concat, ['eotvos', 'lat_corr', 'fac', 'total_corr']) + 'begin_static': self.begin_static, + 'end_static': self.end_static, + 'gravity_channel': gravity['gravity'], + 'grav_dedrift': (detrend, 'gravity_channel', 'begin_static', 'end_static'), + 'gravity_tie': self.gravity_tie, + 'abs_grav': (self.mult, 'gravity_tie', 'grav_dedrift'), + 'corrected_grav': (self.corrected_grav, 'total_corr', 'abs_grav'), + 'filtered_grav': (lp_filter, 'corrected_grav'), + 'new_frame': (self.concat, ['eotvos', 'lat_corr', 'fac', 'total_corr', 'abs_grav', + 'filtered_grav']) } super().__init__() From 75397dd38863d3c107307c625a92d5cb612b332d Mon Sep 17 00:00:00 2001 From: chris Date: Tue, 6 Mar 2018 14:52:30 -0500 Subject: [PATCH 078/236] Change interpolate to use DataFrame method --- dgp/lib/gravity_ingestor.py | 2 +- dgp/lib/trajectory_ingestor.py | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/dgp/lib/gravity_ingestor.py b/dgp/lib/gravity_ingestor.py index 11aa663..46ad796 100644 --- a/dgp/lib/gravity_ingestor.py +++ b/dgp/lib/gravity_ingestor.py @@ -141,7 +141,7 @@ def read_at1a(path, columns=None, fill_with_nans=True, interp=False, # TODO: Replace interp_nans with pandas interpolate if interp: numeric = df.select_dtypes(include=[np.number]) - numeric = numeric.apply(interp_nans) + numeric = numeric.interpolate(method='time') # replace columns for col in numeric.columns: diff --git a/dgp/lib/trajectory_ingestor.py b/dgp/lib/trajectory_ingestor.py index 1c3856c..83b7da4 100644 --- a/dgp/lib/trajectory_ingestor.py +++ b/dgp/lib/trajectory_ingestor.py @@ -125,7 +125,7 @@ def import_trajectory(filepath, delim_whitespace=False, interval=0, if interp: numeric = df.select_dtypes(include=[np.number]) - numeric = numeric.apply(interp_nans) + numeric = numeric.interpolate(method='time') # replace columns for col in numeric.columns: From 31d69aab695d6a18fe02ddae32552e7647f05ea5 Mon Sep 17 00:00:00 2001 From: chris Date: Tue, 6 Mar 2018 15:38:00 -0500 Subject: [PATCH 079/236] Removed old flowchart tests --- tests/test_graphs.py | 378 ------------------------------------------- 1 file changed, 378 deletions(-) delete mode 100644 tests/test_graphs.py diff --git a/tests/test_graphs.py b/tests/test_graphs.py deleted file mode 100644 index d40c49f..0000000 --- a/tests/test_graphs.py +++ /dev/null @@ -1,378 +0,0 @@ -# coding: utf-8 - -import unittest -import csv -from pyqtgraph.flowchart import Flowchart -import pyqtgraph.flowchart.library as fclib -from pyqtgraph.Qt import QtGui -import pandas as pd -import numpy as np - -from tests import sample_dir -import dgp.lib.trajectory_ingestor as ti -from dgp.lib.transform.gravity import (Eotvos, LatitudeCorrection, - FreeAirCorrection) -from dgp.lib.transform.filters import Detrend -from dgp.lib.transform.operators import (ScalarMultiply, ConcatenateSeries, - AddSeries) -from dgp.lib.transform.timeops import ComputeDelay, ShiftFrame - - -class TestGraphNodes(unittest.TestCase): - @classmethod - def setUpClass(cls): - cls.app = QtGui.QApplication([]) - - cls.library = fclib.LIBRARY.copy() - cls.library.addNodeType(Eotvos, [('Gravity',)]) - cls.library.addNodeType(LatitudeCorrection, [('Gravity',)]) - cls.library.addNodeType(FreeAirCorrection, [('Gravity',)]) - cls.library.addNodeType(Detrend, [('Filters',)]) - cls.library.addNodeType(ScalarMultiply, [('Operators',)]) - cls.library.addNodeType(ConcatenateSeries, [('Operators',)]) - - # Ensure gps_fields are ordered correctly relative to test file - gps_fields = ['mdy', 'hms', 'lat', 'long', 'ortho_ht', 'ell_ht', - 'num_stats', 'pdop'] - cls.data = ti.import_trajectory( - 'tests/sample_data/eotvos_short_input.txt', - columns=gps_fields, - skiprows=1, - timeformat='hms' - ) - - @classmethod - def tearDownClass(cls): - cls.app.exit() - - def setUp(self): - self.fc = Flowchart(terminals={ - 'data_in': {'io': 'in'}, - 'data_out': {'io': 'out'} - }) - self.fc.setLibrary(self.library) - - def test_eotvos_node(self): - # TODO: More complete test that spans the range of possible inputs - result_eotvos = [] - with sample_dir.joinpath('eotvos_short_result.csv').open() as fd: - test_data = csv.DictReader(fd) - for line in test_data: - result_eotvos.append(float(line['Eotvos_full'])) - - fnode = self.fc.createNode('Eotvos', pos=(0, 0)) - self.fc.connectTerminals(self.fc['data_in'], fnode['data_in']) - self.fc.connectTerminals(fnode['data_out'], self.fc['data_out']) - - result = self.fc.process(data_in=self.data) - eotvos_a = result['data_out'] - - for i, value in enumerate(eotvos_a): - if 1 < i < len(result_eotvos) - 2: - try: - self.assertAlmostEqual(value, result_eotvos[i], places=2) - except AssertionError: - print("Invalid assertion at data line: {}".format(i)) - raise AssertionError - - def test_free_air_correction(self): - # TODO: More complete test that spans the range of possible inputs - s1 = pd.Series([39.9148595446, 39.9148624273], name='lat') - s2 = pd.Series([1599.197, 1599.147], name='ell_ht') - test_input = pd.concat([s1, s2], axis=1) - test_input.index = pd.Index([self.data.index[0], self.data.index[-1]]) - - expected = pd.Series([-493.308594971815, -493.293177069581], - index=pd.Index([self.data.index[0], - self.data.index[-1]]), - name='fac' - ) - - fnode = self.fc.createNode('FreeAirCorrection', pos=(0, 0)) - self.fc.connectTerminals(self.fc['data_in'], fnode['data_in']) - self.fc.connectTerminals(fnode['data_out'], self.fc['data_out']) - - result = self.fc.process(data_in=test_input) - res = result['data_out'] - - np.testing.assert_array_almost_equal(expected, res, decimal=8) - - # check that the indices are equal - self.assertTrue(test_input.index.identical(res.index)) - - def test_latitude_correction(self): - test_input = pd.DataFrame([39.9148595446, 39.9148624273]) - test_input.columns = ['lat'] - test_input.index = pd.Index([self.data.index[0], self.data.index[-1]]) - - expected = pd.Series([-980162.105035777, -980162.105292394], - index=pd.Index([self.data.index[0], - self.data.index[-1]]), - name='lat_corr' - ) - - fnode = self.fc.createNode('LatitudeCorrection', pos=(0, 0)) - self.fc.connectTerminals(self.fc['data_in'], fnode['data_in']) - self.fc.connectTerminals(fnode['data_out'], self.fc['data_out']) - - result = self.fc.process(data_in=test_input) - res = result['data_out'] - - np.testing.assert_array_almost_equal(expected, res, decimal=8) - - # check that the indexes are equal - self.assertTrue(test_input.index.identical(res.index)) - - def test_detrend_series(self): - test_input = pd.Series(np.arange(5), index=['A', 'B', 'C', 'D', 'E']) - expected = pd.Series(np.zeros(5), index=['A', 'B', 'C', 'D', 'E']) - - fnode = self.fc.createNode('Detrend', pos=(0, 0)) - self.fc.connectTerminals(self.fc['data_in'], fnode['data_in']) - self.fc.connectTerminals(fnode['data_out'], self.fc['data_out']) - fnode.ctrls['begin'].setValue(test_input[0]) - fnode.ctrls['end'].setValue(test_input[-1]) - - result = self.fc.process(data_in=test_input) - res = result['data_out'] - self.assertTrue(res.equals(expected)) - - # check that the indexes are equal - self.assertTrue(test_input.index.identical(res.index)) - - def test_detrend_ndarray(self): - test_input = np.linspace(2, 20, num=10) - expected = np.linspace(0, 0, num=10) - - fnode = self.fc.createNode('Detrend', pos=(0, 0)) - self.fc.connectTerminals(self.fc['data_in'], fnode['data_in']) - self.fc.connectTerminals(fnode['data_out'], self.fc['data_out']) - fnode.ctrls['begin'].setValue(test_input[0]) - fnode.ctrls['end'].setValue(test_input[-1]) - - result = self.fc.process(data_in=test_input) - res = result['data_out'] - np.testing.assert_array_equal(expected, res) - - def test_detrend_dataframe(self): - s1 = pd.Series(np.arange(0, 5)) - s2 = pd.Series(np.arange(2, 7)) - test_input = pd.concat([s1, s2], axis=1) - test_input.index = ['A', 'B', 'C', 'D', 'E'] - - s1 = pd.Series(np.zeros(5)) - s2 = pd.Series(np.ones(5) * 2) - expected = pd.concat([s1, s2], axis=1) - expected.index = ['A', 'B', 'C', 'D', 'E'] - - fnode = self.fc.createNode('Detrend', pos=(0, 0)) - self.fc.connectTerminals(self.fc['data_in'], fnode['data_in']) - self.fc.connectTerminals(fnode['data_out'], self.fc['data_out']) - fnode.ctrls['begin'].setValue(0) - fnode.ctrls['end'].setValue(4) - - result = self.fc.process(data_in=test_input) - res = result['data_out'] - - self.assertTrue(res.equals(expected)) - - # check that the indexes are equal - self.assertTrue(test_input.index.identical(res.index)) - - def test_scalar_multiply(self): - test_input = pd.DataFrame(np.ones((5, 5)), - index=['A', 'B', 'C', 'D', 'E']) - expected = pd.DataFrame(np.ones((5, 5)) * 3, - index=['A', 'B', 'C', 'D', 'E']) - - fnode = self.fc.createNode('ScalarMultiply', pos=(0, 0)) - self.fc.connectTerminals(self.fc['data_in'], fnode['data_in']) - self.fc.connectTerminals(fnode['data_out'], self.fc['data_out']) - fnode.ctrls['multiplier'].setValue(3) - - result = self.fc.process(data_in=test_input) - res = result['data_out'] - - self.assertTrue(res.equals(expected)) - - -class TestBinaryOpsGraphNodes(unittest.TestCase): - - @classmethod - def setUpClass(cls): - cls.app = QtGui.QApplication([]) - cls.library = fclib.LIBRARY.copy() - cls.library.addNodeType(ConcatenateSeries, [('Operators',)]) - cls.library.addNodeType(AddSeries, [('Operators',)]) - - def setUp(self): - self.fc = Flowchart(terminals={ - 'A': {'io': 'in'}, - 'B': {'io': 'in'}, - 'data_out': {'io': 'out'} - }) - - self.fc.setLibrary(self.library) - - @classmethod - def tearDownClass(cls): - cls.app.exit() - - def test_concat_series(self): - input_A = pd.Series(np.arange(0, 5), index=['A', 'B', 'C', 'D', 'E']) - input_B = pd.Series(np.arange(2, 7), index=['A', 'B', 'C', 'D', 'E']) - expected = pd.concat([input_A, input_B], axis=1) - - fnode = self.fc.createNode('ConcatenateSeries', pos=(0, 0)) - self.fc.connectTerminals(self.fc['A'], fnode['A']) - self.fc.connectTerminals(self.fc['B'], fnode['B']) - self.fc.connectTerminals(fnode['data_out'], self.fc['data_out']) - - result = self.fc.process(A=input_A, B=input_B) - res = result['data_out'] - - self.assertTrue(res.equals(expected)) - - # check that the indexes are equal - self.assertTrue(input_A.index.identical(res.index)) - self.assertTrue(input_B.index.identical(res.index)) - - def test_add_series(self): - input_a = pd.Series(np.arange(0, 5), index=['A', 'B', 'C', 'D', 'E']) - input_b = pd.Series(np.arange(2, 7), index=['A', 'B', 'C', 'D', 'E']) - expected = input_a.astype(np.float64) + input_b.astype(np.float64) - - fnode = self.fc.createNode('AddSeries', pos=(0, 0)) - self.fc.connectTerminals(self.fc['A'], fnode['A']) - self.fc.connectTerminals(self.fc['B'], fnode['B']) - self.fc.connectTerminals(fnode['data_out'], self.fc['data_out']) - - result = self.fc.process(A=input_a, B=input_b) - res = result['data_out'] - self.assertTrue(res.equals(expected)) - - -class TestTimeOpsGraphNodes(unittest.TestCase): - @classmethod - def setUpClass(cls): - cls.app = QtGui.QApplication([]) - cls.library = fclib.LIBRARY.copy() - cls.library.addNodeType(ComputeDelay, [('Time Ops',)]) - cls.library.addNodeType(ShiftFrame, [('Time Ops',)]) - - def setUp(self): - self.fc = Flowchart(terminals={ - 's1': {'io': 'in'}, - 's2': {'io': 'in'}, - 'data_out': {'io': 'out'} - }) - - self.fc.setLibrary(self.library) - - @classmethod - def tearDownClass(cls): - cls.app.exit() - - def test_compute_delay_array(self): - rnd_offset = 1.1 - t1 = np.linspace(1, 5000, 50000, dtype=np.float64) - t2 = t1 + rnd_offset - s1 = np.sin(0.8 * t1) + np.sin(0.2 * t1) - s2 = np.sin(0.8 * t2) + np.sin(0.2 * t2) - - fnode = self.fc.createNode('ComputeDelay', pos=(0, 0)) - self.fc.connectTerminals(self.fc['s1'], fnode['s1']) - self.fc.connectTerminals(self.fc['s2'], fnode['s2']) - self.fc.connectTerminals(fnode['data_out'], self.fc['data_out']) - - result = self.fc.process(s1=s1, s2=s2) - res = result['data_out'] - - # TODO: Kludge to make the test pass. Consider whether to admit arrays in graph processing - self.assertAlmostEqual(rnd_offset, -res/10, places=2) - - def test_compute_delay_timelike_index(self): - rnd_offset = 1.1 - t1 = np.arange(0, 5000, 0.1, dtype=np.float64) - t2 = t1 + rnd_offset - s1 = np.sin(0.8 * t1) + np.sin(0.2 * t1) - s2 = np.sin(0.8 * t2) + np.sin(0.2 * t2) - now = pd.Timestamp.now() - index1 = now + pd.to_timedelta(t1, unit='s') - frame1 = pd.Series(s1, index=index1) - index2 = now + pd.to_timedelta(t2, unit='s') - frame2 = pd.Series(s2, index=index2) - - fnode = self.fc.createNode('ComputeDelay', pos=(0, 0)) - self.fc.connectTerminals(self.fc['s1'], fnode['s1']) - self.fc.connectTerminals(self.fc['s2'], fnode['s2']) - self.fc.connectTerminals(fnode['data_out'], self.fc['data_out']) - - result = self.fc.process(s1=frame1, s2=frame2) - res = result['data_out'] - - self.assertAlmostEqual(rnd_offset, -res, places=2) - - def test_compute_delay_timelike_index_raises(self): - rnd_offset = 1.1 - t1 = np.arange(0, 5000, 0.1, dtype=np.float64) - t2 = t1 + rnd_offset - s1 = np.sin(0.8 * t1) + np.sin(0.2 * t1) - s2 = np.sin(0.8 * t2) + np.sin(0.2 * t2) - now = pd.Timestamp.now() - index1 = now + pd.to_timedelta(t1, unit='s') - frame1 = pd.Series(s1, index=index1) - frame2 = s2 - - fnode = self.fc.createNode('ComputeDelay', pos=(0, 0)) - self.fc.connectTerminals(self.fc['s1'], fnode['s1']) - self.fc.connectTerminals(self.fc['s2'], fnode['s2']) - self.fc.connectTerminals(fnode['data_out'], self.fc['data_out']) - - msg_expected = 's2 has no index. Ignoring index for s1.' - with self.assertWarns(UserWarning, msg=msg_expected): - self.fc.process(s1=frame1, s2=frame2) - - frame1 = s1 - index2 = now + pd.to_timedelta(t2, unit='s') - frame2 = pd.Series(s2, index=index2) - - msg_expected = 's1 has no index. Ignoring index for s2.' - with self.assertWarns(UserWarning, msg=msg_expected): - self.fc.process(s1=frame1, s2=frame2) - - frame1 = pd.Series(s1, index=index1) - index2 = now + pd.to_timedelta(t2, unit='s') - frame2 = pd.Series(s2) - - msg_expected = ('Index of s2 is not a DateTimeIndex. Ignoring both ' - 'indexes.') - with self.assertWarns(UserWarning, msg=msg_expected): - self.fc.process(s1=frame1, s2=frame2) - - frame1 = pd.Series(s1) - index2 = now + pd.to_timedelta(t2, unit='s') - frame2 = pd.Series(s2, index=index2) - - msg_expected = ('Index of s1 is not a DateTimeIndex. Ignoring both ' - 'indexes.') - with self.assertWarns(UserWarning, msg=msg_expected): - self.fc.process(s1=frame1, s2=frame2) - - def test_shift_frame(self): - test_input = pd.Series(np.arange(10)) - index = pd.Timestamp.now() + pd.to_timedelta(np.arange(10), unit='s') - test_input.index = index - shifted_index = index.shift(110, freq='L') - expected = test_input.copy() - expected.index = shifted_index - - fnode = self.fc.createNode('ShiftFrame', pos=(0, 0)) - self.fc.connectTerminals(self.fc['s1'], fnode['frame']) - self.fc.connectTerminals(self.fc['s2'], fnode['delay']) - self.fc.connectTerminals(fnode['data_out'], self.fc['data_out']) - - result = self.fc.process(s1=test_input, s2=0.11) - res = result['data_out'] - - self.assertTrue(res.equals(expected)) From dd3b108140b98d3ab4d5ceca926dcf7528c0f219 Mon Sep 17 00:00:00 2001 From: chris Date: Tue, 6 Mar 2018 17:29:46 -0500 Subject: [PATCH 080/236] Added name to output series of lp_filter --- dgp/lib/transform/filters.py | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/dgp/lib/transform/filters.py b/dgp/lib/transform/filters.py index 0302258..1956fc2 100644 --- a/dgp/lib/transform/filters.py +++ b/dgp/lib/transform/filters.py @@ -13,7 +13,8 @@ def lp_filter(data_in, filter_len=100, fs=0.1): taps = signal.firwin(n, wn, window='blackman') filtered_data = signal.filtfilt(taps, 1.0, data_in, padtype='even', padlen=80) - return pd.Series(filtered_data, index=data_in.index) + name = 'blackman_' + str(filter_len) + return pd.Series(filtered_data, index=data_in.index, name=name) # TODO: Do ndarrays with both dimensions greater than 1 work? From b19495bc9794b520d3d7423eafeb1236671b12dd Mon Sep 17 00:00:00 2001 From: chris Date: Tue, 6 Mar 2018 17:30:15 -0500 Subject: [PATCH 081/236] Some efficiency improvements - More efficient method of generting the DatetimeIndex - GPS sync status bit does not accurately indicate when the time is synced, so used another check for now --- dgp/lib/gravity_ingestor.py | 38 +++++++++++++++++-------------------- 1 file changed, 17 insertions(+), 21 deletions(-) diff --git a/dgp/lib/gravity_ingestor.py b/dgp/lib/gravity_ingestor.py index 46ad796..f6fe0fd 100644 --- a/dgp/lib/gravity_ingestor.py +++ b/dgp/lib/gravity_ingestor.py @@ -6,10 +6,8 @@ """ -import csv import numpy as np import pandas as pd -import functools import datetime import struct import fnmatch @@ -17,7 +15,6 @@ import re from .time_utils import convert_gps_time -from .etc import interp_nans def _extract_bits(bitfield, columns=None, as_bool=False): @@ -102,8 +99,8 @@ def read_at1a(path, columns=None, fill_with_nans=True, interp=False, Gravity data indexed by datetime. """ columns = columns or ['gravity', 'long_accel', 'cross_accel', 'beam', - 'temp', 'status', 'pressure', 'Etemp', 'GPSweek', - 'GPSweekseconds'] + 'temp', 'status', 'pressure', 'Etemp', 'gps_week', + 'gps_sow'] df = pd.read_csv(path, header=None, engine='c', na_filter=False, skiprows=skiprows) @@ -123,15 +120,16 @@ def read_at1a(path, columns=None, fill_with_nans=True, interp=False, df.drop('status', axis=1, inplace=True) # create datetime index - dt_list = [] - for (week, sow) in zip(df['GPSweek'], df['GPSweekseconds']): - dt_list.append(convert_gps_time(week, sow, format='datetime')) - - df.index = pd.DatetimeIndex(dt_list) + dt = convert_gps_time(df['gps_week'], df['gps_sow'], format='datetime') + df.index = pd.DatetimeIndex(dt) if fill_with_nans: - # select rows where time is synced with the GPS NMEA - df = df.loc[df['gps_sync']] + # select rows where time is synced with GPS time + # TODO: Does not work. Can show true when time is not synced. + # df = df.loc[df['gps_sync']] + + # TODO: This is not perfect either. Sometimes sync of sow lags. + df = df.loc[df['gps_week'] > 0] # fill gaps with NaNs interval = '100000U' @@ -150,7 +148,7 @@ def read_at1a(path, columns=None, fill_with_nans=True, interp=False, return df -def _parse_ZLS_file_name(filename): +def _parse_zls_file_name(filename): # split by underscore fname = [e.split('.') for e in filename.split('_')] @@ -163,7 +161,7 @@ def _parse_ZLS_file_name(filename): return c -def _read_ZLS_format_file(filepath): +def _read_zls_format_file(filepath): col_names = ['line_name', 'year', 'day', 'hour', 'minute', 'second', 'sensor', 'spring_tension', 'cross_coupling', 'raw_beam', 'vcc', 'al', 'ax', 've2', 'ax2', 'xacc2', @@ -223,7 +221,7 @@ def read_zls(dirpath, begin_time=None, end_time=None, excludes=['.*']): excludes = r'|'.join([fnmatch.translate(x) for x in excludes]) or r'$.' # list files in directory - files = [_parse_ZLS_file_name(f) for f in os.listdir(dirpath) + files = [_parse_zls_file_name(f) for f in os.listdir(dirpath) if os.path.isfile(os.path.join(dirpath, f)) if not re.match(excludes, f)] @@ -253,18 +251,16 @@ def read_zls(dirpath, begin_time=None, end_time=None, excludes=['.*']): .format(begin=begin_time, end=end_time)) # filter file list based on begin and end times - files = filter(lambda x: (x >= begin_time and x <= end_time) - or (begin_time >= x and - begin_time <= x + datetime.timedelta(hours=1)) - or (end_time - datetime.timedelta(hours=1) <= x and - end_time >= x), files) + files = filter(lambda x: (begin_time <= x <= end_time) + or (begin_time - datetime.timedelta(hours=1) <= x <= begin_time) + or (end_time - datetime.timedelta(hours=1) <= x <= end_time), files) # convert to ZLS-type file names files = [dt.strftime('%Y_%H.%j') for dt in files] df = pd.DataFrame() for f in files: - frame = _read_ZLS_format_file(os.path.join(dirpath, f)) + frame = _read_zls_format_file(os.path.join(dirpath, f)) df = pd.concat([df, frame]) df.drop(df.index[df.index < begin_time], inplace=True) From fa097cd87286d83e7b2bdafc4ea51a79802baec0 Mon Sep 17 00:00:00 2001 From: chris Date: Tue, 6 Mar 2018 17:31:52 -0500 Subject: [PATCH 082/236] Added verbosity flag to TransformGraph --- dgp/lib/transform/graph.py | 5 ++++- 1 file changed, 4 insertions(+), 1 deletion(-) diff --git a/dgp/lib/transform/graph.py b/dgp/lib/transform/graph.py index ce399ba..52d7e83 100644 --- a/dgp/lib/transform/graph.py +++ b/dgp/lib/transform/graph.py @@ -11,12 +11,13 @@ def __init__(self, graph, message): class TransformGraph: - def __init__(self, graph=None): + def __init__(self, graph=None, verbose=False): if graph is not None: self.transform_graph = graph self._init_graph() self._results = None self._graph_changed = True + self.verbose = verbose @classmethod def run(cls, *args, item=None): @@ -111,6 +112,8 @@ def _tuple_to_func(tup): while order: k = order.pop() + if self.verbose: + print('Processing node {k!r}'.format(k=k)) node = self.transform_graph[k] if isinstance(node, tuple): f = _tuple_to_func(node) From 3d058a0eb9e31e9869627e7b1ba0aa1aac4c1d33 Mon Sep 17 00:00:00 2001 From: chris Date: Tue, 6 Mar 2018 17:32:45 -0500 Subject: [PATCH 083/236] Fixed up some docstrings --- dgp/lib/transform/gravity.py | 92 ++++++++++++++++++++++-------------- 1 file changed, 56 insertions(+), 36 deletions(-) diff --git a/dgp/lib/transform/gravity.py b/dgp/lib/transform/gravity.py index e1ba4e4..c10d858 100644 --- a/dgp/lib/transform/gravity.py +++ b/dgp/lib/transform/gravity.py @@ -9,20 +9,29 @@ def eotvos_correction(data_in): """ - Eotvos correction - - Parameters - ---------- - data_in: DataFrame - trajectory frame containing latitude, longitude, and - height above the ellipsoid - dt: float - sample period - - Returns - ------- - Series - index taken from the input + Eotvos correction + + Parameters + ---------- + data_in: DataFrame + trajectory frame containing latitude, longitude, and + height above the ellipsoid + dt: float + sample period + + Returns + ------- + Series + index taken from the input + + Notes + ----- + Added to observed gravity when the positive direction of the sensitive axis is + down, otherwise, subtracted. + + References + --------- + Harlan 1968, "Eotvos Corrections for Airborne Gravimetry" JGR 73,n14 """ # constants @@ -115,33 +124,39 @@ def eotvos_correction(data_in): wexr = np.cross(we, r, axis=0) wexwexr = np.cross(we, wexr, axis=0) - # Calculate total acceleration for the aircraft + # total acceleration acc = r2dot + w2_x_rdot + wdot_x_r + wxwxr + # vertical component of aircraft acceleration E = (acc[2] - wexwexr[2]) * mps2mgal return pd.Series(E, index=data_in.index, name='eotvos') def latitude_correction(data_in): """ - WGS84 latitude correction - - Accounts for the Earth's elliptical shape and rotation. The gravity value - that would be observed if Earth were a perfect, rotating ellipsoid is - referred to as normal gravity. Gravity increases with increasing latitude. - The correction is added as one moves toward the equator. - - Parameters - ---------- - data_in: DataFrame - trajectory frame containing latitude, longitude, and - height above the ellipsoid - - Returns - ------- - Series - units are mGal - """ + WGS84 latitude correction + + Accounts for the Earth's elliptical shape and rotation. The gravity value + that would be observed if Earth were a perfect, rotating ellipsoid is + referred to as normal gravity. Gravity increases with increasing latitude. + The correction is added as one moves toward the equator. + + Parameters + ---------- + data_in: DataFrame + trajectory frame containing latitude, longitude, and + height above the ellipsoid + + Returns + ------- + :obj:`Series` + units are mGal + + Notes + ----- + Added to observed gravity when the positive direction of the sensitive axis is + down, otherwise, subtracted. + """ lat = np.deg2rad(data_in['lat'].values) sin_lat2 = np.sin(lat) ** 2 num = 1 + np.float(0.00193185265241) * sin_lat2 @@ -166,12 +181,17 @@ def free_air_correction(data_in): Returns ------- - :class:`Series` + :obj:`Series` units are mGal + + Notes + ----- + Added to observed gravity when the positive direction of the sensitive axis is + down, otherwise, subtracted. """ lat = np.deg2rad(data_in['lat'].values) ht = data_in['ell_ht'].values sin_lat2 = np.sin(lat) ** 2 - fac = -((np.float(0.3087691) - np.float(0.0004398) * sin_lat2) * - ht) + np.float(7.2125e-8) * (ht ** 2) + fac = ((np.float(0.3087691) - np.float(0.0004398) * sin_lat2) * + ht) - np.float(7.2125e-8) * (ht ** 2) return pd.Series(fac, index=data_in.index, name='fac') \ No newline at end of file From b3bb00e5d516fb84c6b16cb23f1e2e0ea4b6e80a Mon Sep 17 00:00:00 2001 From: chris Date: Wed, 7 Mar 2018 17:15:30 -0500 Subject: [PATCH 084/236] Added functionality for syncing gravity with gps acceleration --- dgp/lib/transform/derivatives.py | 10 ++++ dgp/lib/transform/filters.py | 2 +- dgp/lib/transform/gravity.py | 68 ++++++++++++++++++++++++--- dgp/lib/transform/transform_graphs.py | 60 +++++++++++++++++------ 4 files changed, 117 insertions(+), 23 deletions(-) diff --git a/dgp/lib/transform/derivatives.py b/dgp/lib/transform/derivatives.py index 932a376..28e5981 100644 --- a/dgp/lib/transform/derivatives.py +++ b/dgp/lib/transform/derivatives.py @@ -1,6 +1,7 @@ # coding: utf-8 import numpy as np +from scipy.signal import convolve def central_difference(data_in, n=1, order=2, dt=0.1): @@ -22,3 +23,12 @@ def central_difference(data_in, n=1, order=2, dt=0.1): def gradient(data_in, dt=0.1): return np.gradient(data_in, dt) + + +def taylor_fir(data_in, n=1, dt=0.1): + coeff = np.array([1 / 1260, -5 / 504, 5 / 84, -5 / 21, 5 / 6, 0, -5 / 6, 5 / 21, -5 / 84, 5 / 504, -1 / 1260]) + x = data_in + for _ in range(1, n + 1): + y = convolve(x, coeff, mode='same') + x = y + return y * (1/dt)**n diff --git a/dgp/lib/transform/filters.py b/dgp/lib/transform/filters.py index 1956fc2..a4a5e4c 100644 --- a/dgp/lib/transform/filters.py +++ b/dgp/lib/transform/filters.py @@ -5,7 +5,7 @@ import numpy as np -def lp_filter(data_in, filter_len=100, fs=0.1): +def lp_filter(data_in, filter_len=100, fs=10): fc = 1 / filter_len nyq = fs / 2 wn = fc / nyq diff --git a/dgp/lib/transform/gravity.py b/dgp/lib/transform/gravity.py index c10d858..3ae6a85 100644 --- a/dgp/lib/transform/gravity.py +++ b/dgp/lib/transform/gravity.py @@ -4,7 +4,67 @@ import pandas as pd from numpy import array -from .derivatives import central_difference +from .derivatives import central_difference, taylor_fir +from ..etc import align_frames +from ..timesync import find_time_delay, shift_frame + +# constants +a = 6378137.0 # Default semi-major axis +b = 6356752.3142 # Default semi-minor axis +ecc = (a - b) / a # Eccentricity +We = 0.00007292115 # sidereal rotation rate, radians/sec +mps2mgal = 100000 # m/s/s to mgal + + +def gps_velocities(data_in, differentiator=central_difference): + # phi + lat = np.deg2rad(data_in['lat'].values) + + # lambda + lon = np.deg2rad(data_in['long'].values) + + h = data_in['ell_ht'].values + + cn = a / np.sqrt(1 - (ecc * np.sin(lat))**2) + cm = ((1 - ecc**2) / a**2) * cn**3 + lon_dot = differentiator(lon) + lat_dot = differentiator(lat) + ve = (cn + h) * np.cos(lat) * lon_dot + vn = (cm + h) * lat_dot + hdot = differentiator(h) + ve_s = pd.Series(ve, name='ve', index=data_in.index) + vn_s = pd.Series(vn, name='vn', index=data_in.index) + vu_s = pd.Series(hdot, name='vu', index=data_in.index) + + return ve_s, vn_s, vu_s + + +def gps_acceleration(data_in, differentiator=central_difference): + h = data_in['ell_ht'].values + hddot = differentiator(h, n=2) * mps2mgal + + return pd.Series(hddot, name='gps_accel', index=data_in.index) + + +def fo_eotvos(data_in, differentiator=central_difference): + lat = np.deg2rad(data_in['lat'].values) + h = data_in['ell_ht'].values + + ve, vn, vu = gps_velocities(data_in, differentiator=differentiator) + + term1 = vn ** 2 / a * (1 - h / a + ecc * (2 - 3 * np.sin(lat) ** 2)) + term2 = ve ** 2 / a * (1 - h / a - ecc * np.sin(lat) ** 2) + 2 * We * ve * np.cos(lat) + + return (term1 + term2) * mps2mgal + + +def kinematic_accel(data_in): + eotvos = fo_eotvos(data_in, differentiator=taylor_fir) + gps_accel = gps_acceleration(data_in, differentiator=taylor_fir) + gps_accel = gps_accel.iloc[10:-10].copy() + eotvos, gps_accel = align_frames(eotvos, gps_accel) + + return eotvos - gps_accel def eotvos_correction(data_in): @@ -34,12 +94,6 @@ def eotvos_correction(data_in): Harlan 1968, "Eotvos Corrections for Airborne Gravimetry" JGR 73,n14 """ - # constants - a = 6378137.0 # Default semi-major axis - b = 6356752.3142 # Default semi-minor axis - ecc = (a - b) / a # Eccentricity - We = 0.00007292115 # sidereal rotation rate, radians/sec - mps2mgal = 100000 # m/s/s to mgal dt = 0.1 lat = np.deg2rad(data_in['lat'].values) diff --git a/dgp/lib/transform/transform_graphs.py b/dgp/lib/transform/transform_graphs.py index 72e15d1..42ba2a9 100644 --- a/dgp/lib/transform/transform_graphs.py +++ b/dgp/lib/transform/transform_graphs.py @@ -4,8 +4,25 @@ from .graph import TransformGraph from .gravity import (eotvos_correction, latitude_correction, - free_air_correction) -from.filters import lp_filter, detrend + free_air_correction, kinematic_accel) +from .filters import lp_filter, detrend +from ..timesync import find_time_delay, shift_frame +from ..etc import align_frames + + +class SyncGravity(TransformGraph): + + # TODO: align_frames only works with this ordering, but should work for either + def __init__(self, trajectory, gravity): + self.transform_graph = {'trajectory': trajectory, + 'gravity': gravity, + 'raw_grav': gravity['gravity'], + 'kin_accel': (kinematic_accel, 'trajectory'), + 'delay': (find_time_delay, 'kin_accel', 'raw_grav'), + 'shifted_gravity': (shift_frame, 'gravity', 'delay'), + } + + super().__init__() class AirbornePost(TransformGraph): @@ -15,31 +32,44 @@ class AirbornePost(TransformGraph): def total_corr(self, *args): return pd.Series(sum(*args), name='total_corr') - def mult(self, a, b): - return pd.Series(a * b, name='abs_grav') + def add(self, a, b): + return pd.Series(a + b, name='abs_grav') def corrected_grav(self, *args): return pd.Series(sum(*args), name='corrected_grav') - def __init__(self, trajectory, gravity, begin_static, end_static, tie): + def mult(self, a, b): + return a * b + + def demux(self, df, col): + return df[col] + + # TODO: gravity-gps alignment + # TODO: What if a function takes a string argument? Use partial for now. + # TODO: Little tricky to debug this graphs. Breakpoints? Print statements? + def __init__(self, trajectory, gravity, begin_static, end_static, tie, k): self.begin_static = begin_static self.end_static = end_static self.gravity_tie = tie + self.k_factor = k self.transform_graph = {'trajectory': trajectory, 'gravity': gravity, - 'eotvos': (eotvos_correction, 'trajectory'), - 'lat_corr': (latitude_correction, 'trajectory'), - 'fac': (free_air_correction, 'trajectory'), + 'shifted_gravity': (SyncGravity.run(item='shifted_gravity'), 'trajectory', 'gravity'), + 'shifted_trajectory': (partial(align_frames, item='r'), 'shifted_gravity', 'trajectory'), + 'eotvos': (eotvos_correction, 'shifted_trajectory'), + 'lat_corr': (latitude_correction, 'shifted_trajectory'), + 'fac': (free_air_correction, 'shifted_trajectory'), 'total_corr': (self.total_corr, ['eotvos', 'lat_corr', 'fac']), 'begin_static': self.begin_static, 'end_static': self.end_static, - 'gravity_channel': gravity['gravity'], - 'grav_dedrift': (detrend, 'gravity_channel', 'begin_static', 'end_static'), - 'gravity_tie': self.gravity_tie, - 'abs_grav': (self.mult, 'gravity_tie', 'grav_dedrift'), - 'corrected_grav': (self.corrected_grav, 'total_corr', 'abs_grav'), + 'k': self.k_factor, + 'gravity_col': (partial(self.demux, col='gravity'), 'shifted_gravity'), + 'raw_grav': (self.mult, 'k', 'gravity_col'), + 'grav_dedrift': (detrend, 'raw_grav', 'begin_static', 'end_static'), + 'offset': self.gravity_tie - self.k_factor * self.begin_static, + 'abs_grav': (self.add, 'grav_dedrift', 'offset'), + 'corrected_grav': (self.corrected_grav, ['total_corr', 'abs_grav']), 'filtered_grav': (lp_filter, 'corrected_grav'), - 'new_frame': (self.concat, ['eotvos', 'lat_corr', 'fac', 'total_corr', 'abs_grav', - 'filtered_grav']) + 'new_frame': (self.concat, ['eotvos', 'lat_corr', 'fac', 'total_corr', 'abs_grav', 'filtered_grav']) } super().__init__() From a3dcdfd80635fd66283909906de9f72ae5d2f35f Mon Sep 17 00:00:00 2001 From: chris Date: Wed, 7 Mar 2018 17:15:55 -0500 Subject: [PATCH 085/236] Added option to align_frames for returning right, left, or both --- dgp/lib/etc.py | 9 +++++++-- 1 file changed, 7 insertions(+), 2 deletions(-) diff --git a/dgp/lib/etc.py b/dgp/lib/etc.py index f98592e..4b5de61 100644 --- a/dgp/lib/etc.py +++ b/dgp/lib/etc.py @@ -8,7 +8,7 @@ def align_frames(frame1, frame2, align_to='left', interp_method='time', - interp_only=[], fill={}): + interp_only=[], fill={}, item='both'): # TODO: Is there a more appropriate place for this function? # TODO: Add ability to specify interpolation method per column. # TODO: Ensure that dtypes are preserved unless interpolated. @@ -128,7 +128,12 @@ def fill_nans(frame): left = left.loc[begin:end] right = right.loc[begin:end] - return left, right + if item in ('left', 'l', 'L'): + return left + elif item in ('right', 'r', 'R'): + return right + elif item in ('both', 'b', 'B'): + return left, right def interp_nans(y): From 048ae6e18a59fbc679f46cf6c387e2ac59a17319 Mon Sep 17 00:00:00 2001 From: chris Date: Wed, 7 Mar 2018 18:48:07 -0500 Subject: [PATCH 086/236] Fixed test to account for interpolation changes --- tests/test_gravity_ingestor.py | 8 ++++---- 1 file changed, 4 insertions(+), 4 deletions(-) diff --git a/tests/test_gravity_ingestor.py b/tests/test_gravity_ingestor.py index 1d81bdd..e2f86ec 100644 --- a/tests/test_gravity_ingestor.py +++ b/tests/test_gravity_ingestor.py @@ -27,7 +27,7 @@ def test_read_bitfield_options(self): # test num columns specified less than num bits columns = ['test1', 'test2', 'test3', 'test4'] unpacked = gi._extract_bits(status, columns=columns, as_bool=True) - array = np.array([[1, 0, 1, 0],]*5) + array = np.array([[1, 0, 1, 0],] * 5) expect = pd.DataFrame(data=array, columns=columns).astype(np.bool_) self.assertTrue(unpacked.equals(expect)) @@ -57,7 +57,7 @@ def test_read_bitfield_options(self): def test_import_at1a_no_fill_nans(self): df = gi.read_at1a(os.path.abspath('tests/sample_gravity.csv'), fill_with_nans=False) - self.assertEqual(df.shape, (9, 26)) + self.assertEqual(df.shape, (10, 26)) fields = ['gravity', 'long_accel', 'cross_accel', 'beam', 'temp', 'status', 'pressure', 'Etemp', 'GPSweek', 'GPSweekseconds'] # Test and verify an arbitrary line of data against the same line in the pandas DataFrame @@ -70,7 +70,7 @@ def test_import_at1a_no_fill_nans(self): def test_import_at1a_fill_nans(self): df = gi.read_at1a(os.path.abspath('tests/sample_gravity.csv')) - self.assertEqual(df.shape, (9, 26)) + self.assertEqual(df.shape, (10, 26)) fields = ['gravity', 'long_accel', 'cross', 'beam', 'temp', 'status', 'pressure', 'Etemp', 'GPSweek', 'GPSweekseconds'] # Test and verify an arbitrary line of data against the same line in the pandas DataFrame @@ -83,7 +83,7 @@ def test_import_at1a_fill_nans(self): def test_import_at1a_interp(self): df = gi.read_at1a(os.path.abspath('tests/sample_gravity.csv'), interp=True) - self.assertEqual(df.shape, (9, 26)) + self.assertEqual(df.shape, (10, 26)) # check whether NaNs were interpolated for numeric type fields self.assertTrue(df.iloc[[2]].notnull().values.any()) From 9f74d71d5f82f9b9eb420dda23fe229a2b3dbf41 Mon Sep 17 00:00:00 2001 From: chris Date: Wed, 7 Mar 2018 18:53:15 -0500 Subject: [PATCH 087/236] Fix tests --- tests/test_gravity_ingestor.py | 2 +- tests/test_loader.py | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/tests/test_gravity_ingestor.py b/tests/test_gravity_ingestor.py index e2f86ec..f353d69 100644 --- a/tests/test_gravity_ingestor.py +++ b/tests/test_gravity_ingestor.py @@ -57,7 +57,7 @@ def test_read_bitfield_options(self): def test_import_at1a_no_fill_nans(self): df = gi.read_at1a(os.path.abspath('tests/sample_gravity.csv'), fill_with_nans=False) - self.assertEqual(df.shape, (10, 26)) + self.assertEqual(df.shape, (9, 26)) fields = ['gravity', 'long_accel', 'cross_accel', 'beam', 'temp', 'status', 'pressure', 'Etemp', 'GPSweek', 'GPSweekseconds'] # Test and verify an arbitrary line of data against the same line in the pandas DataFrame diff --git a/tests/test_loader.py b/tests/test_loader.py index 6fcd291..206d82e 100644 --- a/tests/test_loader.py +++ b/tests/test_loader.py @@ -36,7 +36,7 @@ def sig_emitted(self, key, value): def test_load_gravity(self): grav_df = gi.read_at1a(str(self.grav_path)) - self.assertEqual((9, 26), grav_df.shape) + self.assertEqual((10, 26), grav_df.shape) ld = loader.LoaderThread( loader.GRAVITY_INGESTORS[loader.GravityTypes.AT1A], self.grav_path, From 587ab26e1b383c1f9e299d6f84fc09b96b126b0f Mon Sep 17 00:00:00 2001 From: chris Date: Fri, 9 Mar 2018 08:37:31 -0500 Subject: [PATCH 088/236] Comments and TODOs --- dgp/lib/transform/derivatives.py | 7 +++---- dgp/lib/transform/filters.py | 12 +++++++++--- dgp/lib/transform/graph.py | 3 ++- dgp/lib/transform/transform_graphs.py | 6 +++--- 4 files changed, 17 insertions(+), 11 deletions(-) diff --git a/dgp/lib/transform/derivatives.py b/dgp/lib/transform/derivatives.py index 28e5981..d0e5276 100644 --- a/dgp/lib/transform/derivatives.py +++ b/dgp/lib/transform/derivatives.py @@ -5,6 +5,7 @@ def central_difference(data_in, n=1, order=2, dt=0.1): + """ central difference differentiator """ if order == 2: # first derivative if n == 1: @@ -21,11 +22,9 @@ def central_difference(data_in, n=1, order=2, dt=0.1): return np.pad(dy, (1, 1), 'edge') -def gradient(data_in, dt=0.1): - return np.gradient(data_in, dt) - - +# TODO: Add option to specify order def taylor_fir(data_in, n=1, dt=0.1): + """ 10th order Taylor series FIR differentiator """ coeff = np.array([1 / 1260, -5 / 504, 5 / 84, -5 / 21, 5 / 6, 0, -5 / 6, 5 / 21, -5 / 84, 5 / 504, -1 / 1260]) x = data_in for _ in range(1, n + 1): diff --git a/dgp/lib/transform/filters.py b/dgp/lib/transform/filters.py index a4a5e4c..0f4f527 100644 --- a/dgp/lib/transform/filters.py +++ b/dgp/lib/transform/filters.py @@ -5,7 +5,11 @@ import numpy as np -def lp_filter(data_in, filter_len=100, fs=10): +# TODO: Add Gaussian filter +# TODO: Add B-spline +# TODO: Move detrend + +def lp_filter(data_in, filter_len=100, fs=1): fc = 1 / filter_len nyq = fs / 2 wn = fc / nyq @@ -13,12 +17,14 @@ def lp_filter(data_in, filter_len=100, fs=10): taps = signal.firwin(n, wn, window='blackman') filtered_data = signal.filtfilt(taps, 1.0, data_in, padtype='even', padlen=80) - name = 'blackman_' + str(filter_len) + name = 'filt_blackman_' + str(filter_len) return pd.Series(filtered_data, index=data_in.index, name=name) -# TODO: Do ndarrays with both dimensions greater than 1 work? def detrend(data_in, begin, end): + # TODO: Do ndarrays with both dimensions greater than 1 work? + + # TODO: Duck type this check? if isinstance(data_in, pd.DataFrame): length = len(data_in.index) else: diff --git a/dgp/lib/transform/graph.py b/dgp/lib/transform/graph.py index 52d7e83..55dd87d 100644 --- a/dgp/lib/transform/graph.py +++ b/dgp/lib/transform/graph.py @@ -9,7 +9,8 @@ def __init__(self, graph, message): self.graph = graph self.message = message - +# TODO: Better validation and more descriptive error messages to aid debugging +# TODO: Looping? class TransformGraph: def __init__(self, graph=None, verbose=False): if graph is not None: diff --git a/dgp/lib/transform/transform_graphs.py b/dgp/lib/transform/transform_graphs.py index 42ba2a9..71dc805 100644 --- a/dgp/lib/transform/transform_graphs.py +++ b/dgp/lib/transform/transform_graphs.py @@ -44,9 +44,9 @@ def mult(self, a, b): def demux(self, df, col): return df[col] - # TODO: gravity-gps alignment # TODO: What if a function takes a string argument? Use partial for now. - # TODO: Little tricky to debug this graphs. Breakpoints? Print statements? + # TODO: Little tricky to debug these graphs. Breakpoints? Print statements? + # TODO: Fix detrending for a section of flight def __init__(self, trajectory, gravity, begin_static, end_static, tie, k): self.begin_static = begin_static self.end_static = end_static @@ -69,7 +69,7 @@ def __init__(self, trajectory, gravity, begin_static, end_static, tie, k): 'offset': self.gravity_tie - self.k_factor * self.begin_static, 'abs_grav': (self.add, 'grav_dedrift', 'offset'), 'corrected_grav': (self.corrected_grav, ['total_corr', 'abs_grav']), - 'filtered_grav': (lp_filter, 'corrected_grav'), + 'filtered_grav': (partial(lp_filter, fs=10), 'corrected_grav'), 'new_frame': (self.concat, ['eotvos', 'lat_corr', 'fac', 'total_corr', 'abs_grav', 'filtered_grav']) } super().__init__() From 929f5b945895240afd183242396def218a41fb3b Mon Sep 17 00:00:00 2001 From: chris Date: Fri, 9 Mar 2018 10:10:03 -0500 Subject: [PATCH 089/236] Moved some functions out of processing graph --- dgp/lib/transform/transform_graphs.py | 15 +-------------- 1 file changed, 1 insertion(+), 14 deletions(-) diff --git a/dgp/lib/transform/transform_graphs.py b/dgp/lib/transform/transform_graphs.py index 71dc805..5a2b718 100644 --- a/dgp/lib/transform/transform_graphs.py +++ b/dgp/lib/transform/transform_graphs.py @@ -32,15 +32,9 @@ class AirbornePost(TransformGraph): def total_corr(self, *args): return pd.Series(sum(*args), name='total_corr') - def add(self, a, b): - return pd.Series(a + b, name='abs_grav') - def corrected_grav(self, *args): return pd.Series(sum(*args), name='corrected_grav') - def mult(self, a, b): - return a * b - def demux(self, df, col): return df[col] @@ -60,14 +54,7 @@ def __init__(self, trajectory, gravity, begin_static, end_static, tie, k): 'lat_corr': (latitude_correction, 'shifted_trajectory'), 'fac': (free_air_correction, 'shifted_trajectory'), 'total_corr': (self.total_corr, ['eotvos', 'lat_corr', 'fac']), - 'begin_static': self.begin_static, - 'end_static': self.end_static, - 'k': self.k_factor, - 'gravity_col': (partial(self.demux, col='gravity'), 'shifted_gravity'), - 'raw_grav': (self.mult, 'k', 'gravity_col'), - 'grav_dedrift': (detrend, 'raw_grav', 'begin_static', 'end_static'), - 'offset': self.gravity_tie - self.k_factor * self.begin_static, - 'abs_grav': (self.add, 'grav_dedrift', 'offset'), + 'abs_grav': (partial(self.demux, col='gravity'), 'shifted_gravity'), 'corrected_grav': (self.corrected_grav, ['total_corr', 'abs_grav']), 'filtered_grav': (partial(lp_filter, fs=10), 'corrected_grav'), 'new_frame': (self.concat, ['eotvos', 'lat_corr', 'fac', 'total_corr', 'abs_grav', 'filtered_grav']) From 3d88d77d90bf56f5024b9e10decbcaacf3f80e50 Mon Sep 17 00:00:00 2001 From: chris Date: Fri, 9 Mar 2018 12:33:00 -0500 Subject: [PATCH 090/236] Removed extraneous variables from AirbornePost --- dgp/lib/transform/transform_graphs.py | 9 ++++----- 1 file changed, 4 insertions(+), 5 deletions(-) diff --git a/dgp/lib/transform/transform_graphs.py b/dgp/lib/transform/transform_graphs.py index 5a2b718..55dce02 100644 --- a/dgp/lib/transform/transform_graphs.py +++ b/dgp/lib/transform/transform_graphs.py @@ -5,7 +5,7 @@ from .graph import TransformGraph from .gravity import (eotvos_correction, latitude_correction, free_air_correction, kinematic_accel) -from .filters import lp_filter, detrend +from .filters import lp_filter from ..timesync import find_time_delay, shift_frame from ..etc import align_frames @@ -41,11 +41,9 @@ def demux(self, df, col): # TODO: What if a function takes a string argument? Use partial for now. # TODO: Little tricky to debug these graphs. Breakpoints? Print statements? # TODO: Fix detrending for a section of flight - def __init__(self, trajectory, gravity, begin_static, end_static, tie, k): + def __init__(self, trajectory, gravity, begin_static, end_static): self.begin_static = begin_static self.end_static = end_static - self.gravity_tie = tie - self.k_factor = k self.transform_graph = {'trajectory': trajectory, 'gravity': gravity, 'shifted_gravity': (SyncGravity.run(item='shifted_gravity'), 'trajectory', 'gravity'), @@ -57,6 +55,7 @@ def __init__(self, trajectory, gravity, begin_static, end_static, tie, k): 'abs_grav': (partial(self.demux, col='gravity'), 'shifted_gravity'), 'corrected_grav': (self.corrected_grav, ['total_corr', 'abs_grav']), 'filtered_grav': (partial(lp_filter, fs=10), 'corrected_grav'), - 'new_frame': (self.concat, ['eotvos', 'lat_corr', 'fac', 'total_corr', 'abs_grav', 'filtered_grav']) + 'new_frame': (self.concat, ['eotvos', 'lat_corr', 'fac', 'total_corr', 'abs_grav', + 'corrected_grav', 'filtered_grav']) } super().__init__() From 612d839fc047a9bf1f3b370dabfde60bed56bd3a Mon Sep 17 00:00:00 2001 From: dporter Date: Fri, 18 May 2018 18:18:22 -0400 Subject: [PATCH 091/236] ENH: Added process_script.py to examples directory for batch processing of airborne data. ENH: Added plots.py file to lib directory. Added shapely, cartopy, and geos to requirements. --- dgp/lib/plots.py | 130 +++++++++++++++++++++++++++++++++ examples/process_script.py | 142 +++++++++++++++++++++++++++++++++++++ requirements.txt | 9 ++- 3 files changed, 280 insertions(+), 1 deletion(-) create mode 100644 dgp/lib/plots.py create mode 100755 examples/process_script.py diff --git a/dgp/lib/plots.py b/dgp/lib/plots.py new file mode 100644 index 0000000..744f83e --- /dev/null +++ b/dgp/lib/plots.py @@ -0,0 +1,130 @@ +# coding=utf-8 + +""" +plots.py +Library for plotting functions + +""" +import numpy as np +import matplotlib.pyplot as plt +import matplotlib.cm as cm +import matplotlib.dates as mdates +import cartopy.crs as ccrs +from cartopy.mpl.gridliner import LONGITUDE_FORMATTER, LATITUDE_FORMATTER +import shapely.geometry as sgeom + + +def read_meterconfig(ini_file, parameter): + f1 = open(ini_file,"r") + for line in f1.readlines(): + line_list = line.split('=') + if line_list[0] == parameter: + value = float(line_list[1]) + f1.close() + return value + + +def timeseries_gravity_diagnostic(df, my_varlist, my_varunits, st, et, plottitle, plotname, **kwargs): + """ + Plots any number of varaibles in a single dataframe, but please adjust the figure size + until I figure out how to do it more better. + Parameters + ---------- + df : pandas.DataFrame + Base DataFrame + my_varlist : list + variables to be plotted (must be same as DataFrame columns) + my_varunits : list + variable units + st : datetime + start time + et : datetime + end time + plottitle : string + plotname : string + + + Returns + ------- + plot : plt.figure + Multi-paneled Timeseries Figure + """ + my_ls = '-' + my_lw = 0.5 + my_marker = None + print('p v') + plt.subplots_adjust(hspace=0.000) + plt.style.use('ggplot') + number_of_subplots = np.shape(my_varlist)[0] + fig = plt.figure(figsize=(8, 6), facecolor='white', dpi=96) + fig.suptitle(plottitle) + for p, v in enumerate(my_varlist): + # for p,v in enumerate(range(number_of_subplots)): + p = p + 1 + print('{} {}'.format(p, v)) + ax = plt.subplot(number_of_subplots, 1, p) + # ax.plot(df.loc[st:et].index, df[v].loc[st:et], color='red', label='ModelOnly', + # ax.plot(df[v].index, df[v].values, color='red', label='ModelOnly', + # ls=my_ls, lw=my_lw, marker=my_marker) + df[v].plot(ax=ax, color='black', label=v, ls=my_ls, lw=my_lw, marker=my_marker) + ax.set_title(v) + ax.set_ylabel(my_varunits[p - 1]) + + ax.xaxis.set_major_formatter(mdates.DateFormatter('%d-%b %H:%M')) + fig.autofmt_xdate() + plt.tight_layout() + fig.subplots_adjust(top=0.89) + # ax.legend(ncol=1, loc='upper right') + # plt.figlegend((ax, ax2), ('ModelOnly', 'Obs'), loc='upper right')#, labelspacing=0.) + # plt.legend(ncol=1, bbox_to_anchor=(1.1, 1.05)) + plt.savefig(plotname) + plt.close() + + +def mapplot_line(pnt_full, pnt, data, var, units='', ptitle='test_map', pfile='test_map'): + """ + This makes a map plot of line segment + :param pnt_full: + :param pnt: + :param data: + :param var: + :param units: + :param ptitle: + :param pfile: + :return: + """ + try: + # box = sgeom.box(minx=160, maxx=210, miny=-83, maxy=-77) # TODO: do this more better + box = sgeom.box(minx=pnt['long'].min() - 3, maxx=pnt['long'].max() + 3, + miny=pnt['lat'].min() - 3, maxy=pnt['lat'].max() + 3) + x0, y0, x1, y1 = box.bounds + if x0 < 0: + myproj = ccrs.SouthPolarStereo(central_longitude=180) + else: + myproj = ccrs.NorthPolarStereo(central_longitude=0) + fig = plt.figure(figsize=(8, 4), facecolor='white', dpi=144) + ax = plt.axes(projection=myproj) + + s1 = plt.scatter(pnt_full['long'], pnt_full['lat'], c='black', s=1, transform=ccrs.PlateCarree()) + s2 = plt.scatter(pnt['long'], pnt['lat'], c=data[var], cmap=cm.Spectral, s=10, transform=ccrs.PlateCarree()) + p1 = ax.plot(pnt['long'][0], pnt['lat'][0], 'k*', markersize=7, transform=ccrs.PlateCarree()) + cb = fig.colorbar(s2, ax=ax, label=units, + orientation='vertical', shrink=0.8, pad=0.05) + cb.ax.set_yticklabels(cb.ax.get_yticklabels(), rotation=0) + cb.ax.tick_params(labelsize=6) + + ax.coastlines(resolution='10m') + ax.xlabels_top = ax.ylabels_right = False + ax.gridlines(draw_labels=False, alpha=0.3, color='grey') + ax.xformatter = LONGITUDE_FORMATTER + ax.yformatter = LATITUDE_FORMATTER + ax.set_extent([x0, x1, y0, y1], ccrs.PlateCarree()) + + plt.tight_layout() + plt.subplots_adjust(top=0.90) + plt.suptitle(ptitle, y=0.98) + plt.savefig(pfile, bbox_inches='tight') # save the figure to file + plt.close() + except IndexError: + print("Couldn't make Map Plot.") + return diff --git a/examples/process_script.py b/examples/process_script.py new file mode 100755 index 0000000..f800904 --- /dev/null +++ b/examples/process_script.py @@ -0,0 +1,142 @@ +import os +from datetime import datetime + +from dgp.lib.gravity_ingestor import read_at1a +from dgp.lib.trajectory_ingestor import import_trajectory +from dgp.lib.etc import align_frames +from dgp.lib.transform.transform_graphs import AirbornePost +from dgp.lib.transform.filters import detrend +from dgp.lib.plots import timeseries_gravity_diagnostic, mapplot_line, read_meterconfig + +# Runtime Option +campaign = 'OIB' # 'ROSETTA' + +# Set paths +if campaign == 'ROSETTA': + print('ROSETTA') + basedir = '/Users/dporter/Documents/Research/Projects/DGP_test/' + gravity_directory = 'DGP_data' + gravity_file = 'AN04_F1001_20171103_2127.dat' + trajectory_directory = gravity_directory + trajectory_file = 'AN04_F1001_20171103_DGS-INS_FINAL_DGS.txt' + # L650 + begin_line = datetime(2017, 11, 4, 0, 27) + end_line = datetime(2017, 11, 4, 1, 45) + gps_fields = ['mdy', 'hms', 'lat', 'long', 'ortho_ht', 'ell_ht', 'num_stats', 'pdop'] +elif campaign == 'OIB': + print('OIB') + basedir = '/Users/dporter/Documents/Research/Projects/OIB-grav/data/P3_2017' + gravity_directory = 'gravity/dgs/raw/F2004' + gravity_file = 'OIB-P3_20170327_F2004_DGS_0938.dat' + trajectory_directory = 'pnt/dgs-ins/F2004/txt' + trajectory_file = 'OIB-P3_20170327_F2004_DGS-INS_RAPID_DGS.txt' + # NW Coast Parallel + begin_line = datetime(2017, 3, 27, 15, 35) + end_line = datetime(2017, 3, 27, 16, 50) + gps_fields = ['mdy', 'hms', 'lat', 'long', 'ortho_ht', 'ell_ht', 'num_stats', 'pdop'] + +else: + print('Scotia?') + +# Load Data Files +print('\nImporting gravity') +gravity = read_at1a(os.path.join(basedir, gravity_directory, gravity_file), interp=True) +print('\nImporting trajectory') +trajectory = import_trajectory(os.path.join(basedir, trajectory_directory, trajectory_file), + columns=gps_fields, skiprows=1, timeformat='hms') + +# Read MeterProcessing file in Data Directory +config_file = os.path.join(basedir, gravity_directory, "MeterProcessing.ini") +k_factor = read_meterconfig(config_file, 'kfactor') +tie_gravity = read_meterconfig(config_file, 'TieGravity') +print('{0} {1}'.format(k_factor, tie_gravity)) +flight = gravity_file[4:11] + +# statics +# TODO: Semi-automate or create GUI to get statics +first_static = read_meterconfig(config_file, 'PreStill') +second_static = read_meterconfig(config_file, 'PostStill') +# def compute_static(begin, end): +# return gravity[(begin < gravity.index) & (gravity.index < end)]['gravity'].mean() +# +# begin_first_static = datetime(2016, 8, 10, 19, 57) +# end_first_static = datetime(2016, 8, 10, 20, 8) +# first_static = compute_static(begin_first_static, end_first_static) +# +# begin_second_static = datetime(2016, 8, 10, 21, 7) +# end_second_static = datetime(2016, 8, 10, 21, 17) +# second_static = compute_static(begin_second_static, end_second_static) + +# pre-processing prep +trajectory_full = trajectory[['long', 'lat']] +gravity = gravity[(begin_line <= gravity.index) & (gravity.index <= end_line)] +trajectory = trajectory[(begin_line <= trajectory.index) & (trajectory.index <= end_line)] + +# align gravity and trajectory frames +gravity, trajectory = align_frames(gravity, trajectory) + +# adjust for crossing the prime meridian +trajectory['long'] = trajectory['long'].where(trajectory['long'] > 0, trajectory['long'] + 360) + +# de-drift +gravity['gravity'] = detrend(gravity['gravity'], first_static, second_static) + +# adjust to absolute +offset = tie_gravity - k_factor * first_static +gravity['gravity'] += offset + +# print('\nProcessing') +# g = AirbornePost(trajectory, gravity, begin_static=first_static, end_static=second_static) +# results = g.execute() + +########### +# Real plots +print('\nPlotting') +if 'results' in locals(): + # Time-series Plot + variables = ['ell_ht', 'lat', 'long'] + variable_units = ['m', 'degrees', 'degrees'] + plot_title = campaign + ' ' + flight + ': PNT' + plot_name = os.path.join(basedir, campaign + '_' + flight + '_DGP_TS_pnt.png') + timeseries_gravity_diagnostic(results['shifted_trajectory'], variables, variable_units, begin_line, end_line, + plot_title, plot_name) + + # Time-series Plot + variables = ['eotvos', 'lat_corr', 'fac', 'total_corr'] + variable_units = ['mGal', 'mGal', 'mGal', 'mGal'] + plot_title = campaign + ' ' + flight + ': Corrections' + plot_name = os.path.join(basedir, campaign + '_' + flight + '_DGP_TS_corrections.png') + timeseries_gravity_diagnostic(results, variables, variable_units, begin_line, end_line, + plot_title, plot_name) + + # Time-series Plot + variables = ['filtered_grav', 'corrected_grav', 'abs_grav'] + variable_units = ['mGal', 'mGal', 'mGal', 'mGal'] + plot_title = campaign + ' ' + flight + ': Gravity' + plot_name = os.path.join(basedir, campaign + '_' + flight + '_DGP_TS_gravity.png') + timeseries_gravity_diagnostic(results, variables, variable_units, begin_line, end_line, + plot_title, plot_name) + + # Map Plot + plot_title = campaign + ' ' + flight + ': Gravity' + plot_name = os.path.join(basedir, campaign + '_' + flight + '_DGP_mapplot_gravity.png') + mapplot_line(trajectory_full, trajectory, results, 'filtered_grav', 'mGal', plot_title, plot_name) +else: + # Temporary plots for when graph is commented out (currently OIB_P3) + variables = ['gravity', 'cross_accel', 'beam', 'temp'] + variable_units = ['mGal', 'mGal', 'mGal', 'C'] + plot_title = campaign + ' ' + flight + ': QC' + plot_name = os.path.join(basedir, campaign + '_' + flight + '_DGP_TS_QC.png') + timeseries_gravity_diagnostic(gravity, variables, variable_units, begin_line, end_line, + plot_title, plot_name) + + variables = ['ell_ht', 'ortho_ht', 'lat', 'long'] + variable_units = ['m', 'm', 'degrees', 'degrees'] + plot_title = campaign + ' ' + flight + ': PNT' + plot_name = os.path.join(basedir, campaign + '_' + flight + '_DGP_TS_pnt.png') + timeseries_gravity_diagnostic(trajectory, variables, variable_units, begin_line, end_line, + plot_title, plot_name) + + plot_title = campaign + ' ' + flight + ': Gravity' + plot_name = os.path.join(basedir, campaign + '_' + flight + '_DGP_mapplot_gravity.png') + mapplot_line(trajectory_full, trajectory, gravity, 'gravity', 'mGal', plot_title, plot_name) diff --git a/requirements.txt b/requirements.txt index af7f5f1..b7de53b 100644 --- a/requirements.txt +++ b/requirements.txt @@ -1,3 +1,7 @@ +./alabaster==0.7.10 +Babel==2.5.0 +certifi==2017.7.27.1 +chardet==3.0.4 coverage==4.4.1 matplotlib==2.0.2 numpy==1.13.1 @@ -9,5 +13,8 @@ sip==4.19.3 six==1.10.0 tables==3.4.2 pyqtgraph==0.10.0 - pytest>=3.3.2 +urllib3==1.22 +cartopy==0.15.1 +shapely==1.5.17 +geos==3.5.1 From 7d7d692dcabb27c2a7e90f9f46b5d4e04798366d Mon Sep 17 00:00:00 2001 From: chris Date: Mon, 12 Mar 2018 14:30:39 -0400 Subject: [PATCH 092/236] Removed concatenation from AirbornePost graph --- dgp/lib/transform/transform_graphs.py | 11 +++++------ 1 file changed, 5 insertions(+), 6 deletions(-) diff --git a/dgp/lib/transform/transform_graphs.py b/dgp/lib/transform/transform_graphs.py index 55dce02..31470af 100644 --- a/dgp/lib/transform/transform_graphs.py +++ b/dgp/lib/transform/transform_graphs.py @@ -27,7 +27,7 @@ def __init__(self, trajectory, gravity): class AirbornePost(TransformGraph): - concat = partial(pd.concat, axis=1, join='outer') + # concat = partial(pd.concat, axis=1, join='outer') def total_corr(self, *args): return pd.Series(sum(*args), name='total_corr') @@ -46,16 +46,15 @@ def __init__(self, trajectory, gravity, begin_static, end_static): self.end_static = end_static self.transform_graph = {'trajectory': trajectory, 'gravity': gravity, - 'shifted_gravity': (SyncGravity.run(item='shifted_gravity'), 'trajectory', 'gravity'), - 'shifted_trajectory': (partial(align_frames, item='r'), 'shifted_gravity', 'trajectory'), + 'synced_gravity': (SyncGravity.run(item='shifted_gravity'), 'trajectory', 'gravity'), + 'shifted_trajectory': (partial(align_frames, item='r'), 'synced_gravity', 'trajectory'), + 'shifted_gravity': (partial(align_frames, item='l'), 'synced_gravity', 'trajectory'), 'eotvos': (eotvos_correction, 'shifted_trajectory'), 'lat_corr': (latitude_correction, 'shifted_trajectory'), 'fac': (free_air_correction, 'shifted_trajectory'), 'total_corr': (self.total_corr, ['eotvos', 'lat_corr', 'fac']), 'abs_grav': (partial(self.demux, col='gravity'), 'shifted_gravity'), 'corrected_grav': (self.corrected_grav, ['total_corr', 'abs_grav']), - 'filtered_grav': (partial(lp_filter, fs=10), 'corrected_grav'), - 'new_frame': (self.concat, ['eotvos', 'lat_corr', 'fac', 'total_corr', 'abs_grav', - 'corrected_grav', 'filtered_grav']) + 'filtered_grav': (partial(lp_filter, fs=10), 'corrected_grav') } super().__init__() From d088b413968f5869e90d526dc687157da926a8e9 Mon Sep 17 00:00:00 2001 From: chris Date: Fri, 30 Mar 2018 10:19:54 -0400 Subject: [PATCH 093/236] Enabled specification of differentiator for eotvos --- dgp/lib/timesync.py | 2 +- dgp/lib/transform/gravity.py | 48 +++++++++++++++------------ dgp/lib/transform/transform_graphs.py | 27 ++++++++------- 3 files changed, 43 insertions(+), 34 deletions(-) diff --git a/dgp/lib/timesync.py b/dgp/lib/timesync.py index 84cb5c2..b87ffb8 100644 --- a/dgp/lib/timesync.py +++ b/dgp/lib/timesync.py @@ -148,7 +148,7 @@ def find_time_delay(s1, s2, datarate=1, resolution: bool=False): z = np.polyfit(shift[maxi - 1:maxi + 2], corre[maxi - 1:maxi + 2], 2) dt1 = z[1] / (2 * z[0]) - + delay = dt1 / scale return dt1 / scale diff --git a/dgp/lib/transform/gravity.py b/dgp/lib/transform/gravity.py index 3ae6a85..ea8d133 100644 --- a/dgp/lib/transform/gravity.py +++ b/dgp/lib/transform/gravity.py @@ -16,7 +16,7 @@ mps2mgal = 100000 # m/s/s to mgal -def gps_velocities(data_in, differentiator=central_difference): +def gps_velocities(data_in, output='series', differentiator=central_difference): # phi lat = np.deg2rad(data_in['lat'].values) @@ -32,11 +32,14 @@ def gps_velocities(data_in, differentiator=central_difference): ve = (cn + h) * np.cos(lat) * lon_dot vn = (cm + h) * lat_dot hdot = differentiator(h) - ve_s = pd.Series(ve, name='ve', index=data_in.index) - vn_s = pd.Series(vn, name='vn', index=data_in.index) - vu_s = pd.Series(hdot, name='vu', index=data_in.index) - return ve_s, vn_s, vu_s + if output in ('series', 'Series'): + ve_s = pd.Series(ve, name='ve', index=data_in.index) + vn_s = pd.Series(vn, name='vn', index=data_in.index) + vu_s = pd.Series(hdot, name='vu', index=data_in.index) + return ve_s, vn_s, vu_s + elif output in ('array', 'Array'): + return ve, vn, hdot def gps_acceleration(data_in, differentiator=central_difference): @@ -61,13 +64,13 @@ def fo_eotvos(data_in, differentiator=central_difference): def kinematic_accel(data_in): eotvos = fo_eotvos(data_in, differentiator=taylor_fir) gps_accel = gps_acceleration(data_in, differentiator=taylor_fir) - gps_accel = gps_accel.iloc[10:-10].copy() + # gps_accel = gps_accel.iloc[10:-10].copy() eotvos, gps_accel = align_frames(eotvos, gps_accel) return eotvos - gps_accel -def eotvos_correction(data_in): +def eotvos_correction(data_in, differentiator=central_difference): """ Eotvos correction @@ -100,12 +103,12 @@ def eotvos_correction(data_in): lon = np.deg2rad(data_in['long'].values) ht = data_in['ell_ht'].values - dlat = central_difference(lat, n=1, dt=dt) - ddlat = central_difference(lat, n=2, dt=dt) - dlon = central_difference(lon, n=1, dt=dt) - ddlon = central_difference(lon, n=2, dt=dt) - dht = central_difference(ht, n=1, dt=dt) - ddht = central_difference(ht, n=2, dt=dt) + dlat = differentiator(lat, n=1, dt=dt) + ddlat = differentiator(lat, n=2, dt=dt) + dlon = differentiator(lon, n=1, dt=dt) + ddlon = differentiator(lon, n=2, dt=dt) + dht = differentiator(ht, n=1, dt=dt) + ddht = differentiator(ht, n=2, dt=dt) sin_lat = np.sin(lat) cos_lat = np.cos(lat) @@ -113,10 +116,10 @@ def eotvos_correction(data_in): cos_2lat = np.cos(2.0 * lat) # Calculate the r' and its derivatives - r_prime = a * (1.0 - ecc * sin_lat * sin_lat) + r_prime = a * (1.0 - ecc * sin_lat ** 2) dr_prime = -a * dlat * ecc * sin_2lat - ddr_prime = (-a * ddlat * ecc * sin_2lat - 2.0 * a * - dlat * dlat * ecc * cos_2lat) + ddr_prime = (-a * ddlat * ecc * sin_2lat - 2.0 * a * (dlat ** 2) * + ecc * cos_2lat) # Calculate the deviation from the normal and its derivatives D = np.arctan(ecc * sin_2lat) @@ -178,12 +181,15 @@ def eotvos_correction(data_in): wexr = np.cross(we, r, axis=0) wexwexr = np.cross(we, wexr, axis=0) - # total acceleration - acc = r2dot + w2_x_rdot + wdot_x_r + wxwxr + kin_accel = r2dot * mps2mgal + eotvos = (w2_x_rdot + wdot_x_r + wxwxr - wexwexr) * mps2mgal - # vertical component of aircraft acceleration - E = (acc[2] - wexwexr[2]) * mps2mgal - return pd.Series(E, index=data_in.index, name='eotvos') + # acc = r2dot + w2_x_rdot + wdot_x_r + wxwxr + + eotvos = pd.Series(eotvos[2], index=data_in.index, name='eotvos') + kin_accel = pd.Series(kin_accel[2], index=data_in.index, name='kin_accel') + + return pd.concat([eotvos, kin_accel], axis=1, join='outer') def latitude_correction(data_in): diff --git a/dgp/lib/transform/transform_graphs.py b/dgp/lib/transform/transform_graphs.py index 31470af..ac19b49 100644 --- a/dgp/lib/transform/transform_graphs.py +++ b/dgp/lib/transform/transform_graphs.py @@ -8,16 +8,19 @@ from .filters import lp_filter from ..timesync import find_time_delay, shift_frame from ..etc import align_frames +from .derivatives import taylor_fir, central_difference +def demux(df, col): + return df[col] + class SyncGravity(TransformGraph): # TODO: align_frames only works with this ordering, but should work for either - def __init__(self, trajectory, gravity): - self.transform_graph = {'trajectory': trajectory, - 'gravity': gravity, + def __init__(self, kin_accel, gravity): + self.transform_graph = {'gravity': gravity, 'raw_grav': gravity['gravity'], - 'kin_accel': (kinematic_accel, 'trajectory'), + 'kin_accel': kin_accel, 'delay': (find_time_delay, 'kin_accel', 'raw_grav'), 'shifted_gravity': (shift_frame, 'gravity', 'delay'), } @@ -35,25 +38,25 @@ def total_corr(self, *args): def corrected_grav(self, *args): return pd.Series(sum(*args), name='corrected_grav') - def demux(self, df, col): - return df[col] - # TODO: What if a function takes a string argument? Use partial for now. # TODO: Little tricky to debug these graphs. Breakpoints? Print statements? - # TODO: Fix detrending for a section of flight def __init__(self, trajectory, gravity, begin_static, end_static): self.begin_static = begin_static self.end_static = end_static self.transform_graph = {'trajectory': trajectory, 'gravity': gravity, - 'synced_gravity': (SyncGravity.run(item='shifted_gravity'), 'trajectory', 'gravity'), + 'synced_gravity': (SyncGravity.run(item='shifted_gravity'), 'kin_accel', 'gravity'), 'shifted_trajectory': (partial(align_frames, item='r'), 'synced_gravity', 'trajectory'), 'shifted_gravity': (partial(align_frames, item='l'), 'synced_gravity', 'trajectory'), - 'eotvos': (eotvos_correction, 'shifted_trajectory'), + 'eotvos_and_accel': (partial(eotvos_correction, differentiator=central_difference), 'trajectory'), + 'eotvos': (partial(demux, col='eotvos'), 'eotvos_and_accel'), + 'kin_accel': (partial(demux, col='kin_accel'), 'eotvos_and_accel'), + 'aligned_eotvos': (partial(align_frames, item='r'), 'shifted_trajectory', 'eotvos'), + 'aligned_kin_accel': (partial(align_frames, item='r'), 'shifted_trajectory', 'kin_accel'), 'lat_corr': (latitude_correction, 'shifted_trajectory'), 'fac': (free_air_correction, 'shifted_trajectory'), - 'total_corr': (self.total_corr, ['eotvos', 'lat_corr', 'fac']), - 'abs_grav': (partial(self.demux, col='gravity'), 'shifted_gravity'), + 'total_corr': (self.total_corr, ['aligned_kin_accel', 'aligned_eotvos', 'lat_corr', 'fac']), + 'abs_grav': (partial(demux, col='gravity'), 'shifted_gravity'), 'corrected_grav': (self.corrected_grav, ['total_corr', 'abs_grav']), 'filtered_grav': (partial(lp_filter, fs=10), 'corrected_grav') } From 2b752f38d591f8d72d2a3a2823e77051c2c4e94e Mon Sep 17 00:00:00 2001 From: Chris Bertinato Date: Tue, 22 May 2018 19:59:12 -0400 Subject: [PATCH 094/236] Temporarily removed time sync from airborne graph --- dgp/lib/transform/transform_graphs.py | 49 ++++++++++++++++++++++----- 1 file changed, 41 insertions(+), 8 deletions(-) diff --git a/dgp/lib/transform/transform_graphs.py b/dgp/lib/transform/transform_graphs.py index ac19b49..fbcad4d 100644 --- a/dgp/lib/transform/transform_graphs.py +++ b/dgp/lib/transform/transform_graphs.py @@ -45,19 +45,52 @@ def __init__(self, trajectory, gravity, begin_static, end_static): self.end_static = end_static self.transform_graph = {'trajectory': trajectory, 'gravity': gravity, - 'synced_gravity': (SyncGravity.run(item='shifted_gravity'), 'kin_accel', 'gravity'), - 'shifted_trajectory': (partial(align_frames, item='r'), 'synced_gravity', 'trajectory'), - 'shifted_gravity': (partial(align_frames, item='l'), 'synced_gravity', 'trajectory'), 'eotvos_and_accel': (partial(eotvos_correction, differentiator=central_difference), 'trajectory'), 'eotvos': (partial(demux, col='eotvos'), 'eotvos_and_accel'), 'kin_accel': (partial(demux, col='kin_accel'), 'eotvos_and_accel'), - 'aligned_eotvos': (partial(align_frames, item='r'), 'shifted_trajectory', 'eotvos'), - 'aligned_kin_accel': (partial(align_frames, item='r'), 'shifted_trajectory', 'kin_accel'), - 'lat_corr': (latitude_correction, 'shifted_trajectory'), - 'fac': (free_air_correction, 'shifted_trajectory'), + 'aligned_eotvos': (partial(align_frames, item='r'), 'trajectory', 'eotvos'), + 'aligned_kin_accel': (partial(align_frames, item='r'), 'trajectory', 'kin_accel'), + 'lat_corr': (latitude_correction, 'trajectory'), + 'fac': (free_air_correction, 'trajectory'), 'total_corr': (self.total_corr, ['aligned_kin_accel', 'aligned_eotvos', 'lat_corr', 'fac']), - 'abs_grav': (partial(demux, col='gravity'), 'shifted_gravity'), + 'abs_grav': (partial(demux, col='gravity'), 'gravity'), 'corrected_grav': (self.corrected_grav, ['total_corr', 'abs_grav']), 'filtered_grav': (partial(lp_filter, fs=10), 'corrected_grav') } super().__init__() + +# class ExampleGraph(TransformGraph): +# inputs = ('trajectory', 'gravity', 'begin_static', 'end_static') +# graph = { +# ('gravity', 'trajectory'): (align_frames(item='r'), 'gravity', 'trajectory'), +# ('eotvos', 'accel'): (eotvos_correction, 'trajectory'), +# 'lat_corr': (latitude_correction, 'trajectory'), +# 'fac': (free_air_correction, 'trajectory'), +# 'total_corr': (sum, ['eotvos', 'accel', 'lat_corr', 'fac']), +# 'corrected_grav': (sum, 'total_corr', demux('gravity', 'gravity')), +# 'filtered_grav': (lp_filter(fs=10), 'corrected_grav') +# } +# +# @transformgraph +# def detrend(begin_static, end_static, data_in): +# if hasattr(grav, 'index'): +# length = len(data_in.index) +# else: +# length = len(data_in) +# +# trend = np.linspace(begin, end, num=length) +# if hasattr(data_in, 'sub'): +# trend = pd.Series(trend, index=data_in.index) +# result = data_in.sub(trend, axis=0) +# else: +# result = data_in - trend +# return result +# +# # TODO: How to deal with keyword args? +# # should result in +# class Detrend(TransformGraph): +# inputs = ('begin_static', 'end_static', 'data_in') +# _func = detrend +# graph = { +# 'result': (detrend, 'begin_static', 'end_static', 'data_in') +# } \ No newline at end of file From 71f85a28351d0d46889eec118cde9d985189c961 Mon Sep 17 00:00:00 2001 From: Chris Bertinato Date: Sun, 10 Jun 2018 13:17:21 -0400 Subject: [PATCH 095/236] Removed comments --- dgp/lib/transform/transform_graphs.py | 36 --------------------------- 1 file changed, 36 deletions(-) diff --git a/dgp/lib/transform/transform_graphs.py b/dgp/lib/transform/transform_graphs.py index fbcad4d..9c5af8e 100644 --- a/dgp/lib/transform/transform_graphs.py +++ b/dgp/lib/transform/transform_graphs.py @@ -58,39 +58,3 @@ def __init__(self, trajectory, gravity, begin_static, end_static): 'filtered_grav': (partial(lp_filter, fs=10), 'corrected_grav') } super().__init__() - -# class ExampleGraph(TransformGraph): -# inputs = ('trajectory', 'gravity', 'begin_static', 'end_static') -# graph = { -# ('gravity', 'trajectory'): (align_frames(item='r'), 'gravity', 'trajectory'), -# ('eotvos', 'accel'): (eotvos_correction, 'trajectory'), -# 'lat_corr': (latitude_correction, 'trajectory'), -# 'fac': (free_air_correction, 'trajectory'), -# 'total_corr': (sum, ['eotvos', 'accel', 'lat_corr', 'fac']), -# 'corrected_grav': (sum, 'total_corr', demux('gravity', 'gravity')), -# 'filtered_grav': (lp_filter(fs=10), 'corrected_grav') -# } -# -# @transformgraph -# def detrend(begin_static, end_static, data_in): -# if hasattr(grav, 'index'): -# length = len(data_in.index) -# else: -# length = len(data_in) -# -# trend = np.linspace(begin, end, num=length) -# if hasattr(data_in, 'sub'): -# trend = pd.Series(trend, index=data_in.index) -# result = data_in.sub(trend, axis=0) -# else: -# result = data_in - trend -# return result -# -# # TODO: How to deal with keyword args? -# # should result in -# class Detrend(TransformGraph): -# inputs = ('begin_static', 'end_static', 'data_in') -# _func = detrend -# graph = { -# 'result': (detrend, 'begin_static', 'end_static', 'data_in') -# } \ No newline at end of file From 877ca6c308c34e904f92583153d2c1c99419aff3 Mon Sep 17 00:00:00 2001 From: Chris Bertinato Date: Sun, 10 Jun 2018 13:23:37 -0400 Subject: [PATCH 096/236] Added second processing example --- examples/process_example_2.py | 92 +++++++++++++++++++++++++++++++++++ 1 file changed, 92 insertions(+) create mode 100644 examples/process_example_2.py diff --git a/examples/process_example_2.py b/examples/process_example_2.py new file mode 100644 index 0000000..044ebd9 --- /dev/null +++ b/examples/process_example_2.py @@ -0,0 +1,92 @@ +from datetime import datetime +import numpy as np +import pandas as pd + +from dgp.lib.gravity_ingestor import read_at1a +from dgp.lib.trajectory_ingestor import import_trajectory +from dgp.lib.etc import align_frames +from dgp.lib.transform.transform_graphs import AirbornePost +from dgp.lib.transform.filters import detrend + + +def compute_static(begin, end): + return gravity[(begin < gravity.index) & (gravity.index < end)][ + 'gravity'].mean() + + +if __name__ == "__main__": + # import gravity + print('Importing gravity') + gravity_filepath = '/Users/cbertinato/Documents/Git/dgp_example/data/AN04_F1001_20171103_2127.dat' + gravity = read_at1a(gravity_filepath, interp=True) + + # import trajectory + print('Importing trajectory') + trajectory_filepath = '/Users/cbertinato/Documents/Git/dgp_example/data/AN04_F1001_20171103_DGS-INS_FINAL_DGS.txt' + gps_fields = ['mdy', 'hms', 'lat', 'long', 'ortho_ht', 'ell_ht', + 'num_stats', 'pdop'] + trajectory = import_trajectory(trajectory_filepath, + columns=gps_fields, skiprows=1, + timeformat='hms') + + # ROSETTA 3, F1001 + # 11/3/2017 + k_factor = 1.0737027 + first_static = 14555.4 + second_static = 14554.9 + tie_gravity = 980352 + + # L650 + begin_line = datetime(2017, 11, 4, 0, 39) + end_line = datetime(2017, 11, 4, 1, 45) + + # pre-processing prep + gravity = gravity[ + (begin_line <= gravity.index) & (gravity.index <= end_line)] + trajectory = trajectory[ + (begin_line <= trajectory.index) & (trajectory.index <= end_line)] + + # align gravity and trajectory frames + gravity, trajectory = align_frames(gravity, trajectory) + + # adjust for crossing the prime meridian + trajectory['long'] = trajectory['long'].where(trajectory['long'] > 0, + trajectory['long'] + 360) + + # dedrift + gravity['gravity'] = detrend(gravity['gravity'], first_static, + second_static) + + # adjust to absolute + offset = tie_gravity - k_factor * first_static + gravity['gravity'] += offset + + # begin_first_static = datetime(2016, 8, 10, 19, 57) + # end_first_static = datetime(2016, 8, 10, 20, 8) + # first_static = compute_static(begin_first_static, end_first_static) + # + # begin_second_static = datetime(2016, 8, 10, 21, 7) + # end_second_static = datetime(2016, 8, 10, 21, 17) + # second_static = compute_static(begin_second_static, end_second_static) + + print('Processing') + g = AirbornePost(trajectory, gravity, begin_static=first_static, + end_static=second_static) + results = g.execute() + + trajectory = results['shifted_trajectory'] + time = pd.Series(trajectory.index.astype(np.int64) / 10 ** 9, + index=trajectory.index, name='unix_time') + output_frame = pd.concat([time, trajectory[['lat', 'long', 'ell_ht']], + results['aligned_eotvos'], + results['aligned_kin_accel'], results['lat_corr'], + results['fac'], results['total_corr'], + results['abs_grav'], results['corrected_grav']], + axis=1) + output_frame.columns = ['unix_time', 'lat', 'lon', 'ell_ht', 'eotvos', + 'kin_accel', 'lat_corr', 'fac', 'total_corr', + 'vert_accel', 'gravity'] + output_frame = output_frame.iloc[15:-15] + output_frame.to_csv( + '/Users/cbertinato/Documents/Git/dgp_example/data/L650.csv', + index=False) From dde8816360ecdff8a661ffbd74306bcf42db8f7a Mon Sep 17 00:00:00 2001 From: Chris Bertinato Date: Wed, 13 Jun 2018 08:25:16 -0400 Subject: [PATCH 097/236] Updated requirements Also: - Modified TravisCI configuration to install Cython in preparation for addition of the Cartopy package --- .travis.yml | 4 ++++ dgp/lib/transform/__init__.py | 27 --------------------------- install_proj4.sh | 0 requirements.txt | 21 +++++++++++++++------ 4 files changed, 19 insertions(+), 33 deletions(-) create mode 100644 install_proj4.sh diff --git a/.travis.yml b/.travis.yml index 226d3b6..1266fe2 100644 --- a/.travis.yml +++ b/.travis.yml @@ -3,7 +3,11 @@ cache: pip python: - "3.5" - "3.6" +before_install: + - sudo apt-get install -y libgeos-dev + - sudo apt-get install -y proj-bin install: + - pip install Cython==0.28.3 - pip install -r requirements.txt - pip install coverage before_script: diff --git a/dgp/lib/transform/__init__.py b/dgp/lib/transform/__init__.py index 6a14749..e69de29 100644 --- a/dgp/lib/transform/__init__.py +++ b/dgp/lib/transform/__init__.py @@ -1,27 +0,0 @@ -# coding: utf-8 - -from importlib import import_module -from pyqtgraph.flowchart.NodeLibrary import NodeLibrary, isNodeClass - -__all__ = ['LIBRARY'] - -# from . import operators, gravity, derivatives, filters, display, timeops - - -_modules = [] -for name in ['operators', 'gravity', 'derivatives', 'filters', 'display', - 'timeops']: - mod = import_module('.%s' % name, __name__) - _modules.append(mod) - -LIBRARY = NodeLibrary() -for mod in _modules: - nodes = [attr for attr in mod.__dict__.values() if isNodeClass(attr)] - for node in nodes: - # Control whether the Node is available to user in Context Menu - # TODO: Add class attr to enable/disable display on per Node basis - if hasattr(mod, '__displayed__') and not mod.__displayed__: - path = [] - else: - path = [(mod.__name__.split('.')[-1].capitalize(),)] - LIBRARY.addNodeType(node, path) diff --git a/install_proj4.sh b/install_proj4.sh new file mode 100644 index 0000000..e69de29 diff --git a/requirements.txt b/requirements.txt index b7de53b..97f55b6 100644 --- a/requirements.txt +++ b/requirements.txt @@ -1,20 +1,29 @@ -./alabaster==0.7.10 +alabaster==0.7.10 +atomicwrites==1.1.5 +attrs==18.1.0 Babel==2.5.0 certifi==2017.7.27.1 chardet==3.0.4 coverage==4.4.1 +cycler==0.10.0 +idna==2.6 matplotlib==2.0.2 +more-itertools==4.2.0 +nose==1.3.7 +numexpr==2.6.5 numpy==1.13.1 pandas==0.20.3 +pluggy==0.6.0 +py==1.5.3 +pyparsing==2.2.0 PyQt5==5.9 +pyqtgraph==0.10.0 +pytest==3.6.1 +python-dateutil==2.7.3 +pytz==2018.4 requests==2.18.4 scipy==0.19.1 sip==4.19.3 six==1.10.0 tables==3.4.2 -pyqtgraph==0.10.0 -pytest>=3.3.2 urllib3==1.22 -cartopy==0.15.1 -shapely==1.5.17 -geos==3.5.1 From 32cc44b558787a91f0c262f2e7c76a4aa3115dd3 Mon Sep 17 00:00:00 2001 From: Chris Bertinato Date: Thu, 14 Jun 2018 22:21:41 -0400 Subject: [PATCH 098/236] Added back dedup_dict function --- dgp/lib/etc.py | 13 +++++++++++++ 1 file changed, 13 insertions(+) diff --git a/dgp/lib/etc.py b/dgp/lib/etc.py index 4b5de61..73d5db6 100644 --- a/dgp/lib/etc.py +++ b/dgp/lib/etc.py @@ -144,6 +144,19 @@ def interp_nans(y): return y +def dedup_dict(d): + t = [(k, d[k]) for k in d] + t.sort() + res = {} + + for key, val in t: + if val in res.values(): + continue + res[key] = val + + return res + + def gen_uuid(prefix: str=''): """ Generate a UUID4 String with optional prefix replacing the first len(prefix) From 4ba699819090559064ec8875109d2c45dd91aee9 Mon Sep 17 00:00:00 2001 From: Chris Bertinato Date: Thu, 14 Jun 2018 22:22:11 -0400 Subject: [PATCH 099/236] Removed install_proj4.sh --- install_proj4.sh | 0 1 file changed, 0 insertions(+), 0 deletions(-) delete mode 100644 install_proj4.sh diff --git a/install_proj4.sh b/install_proj4.sh deleted file mode 100644 index e69de29..0000000 From ac9b860de4b733adf1baf61d68213057494070e1 Mon Sep 17 00:00:00 2001 From: Chris Bertinato Date: Fri, 15 Jun 2018 08:57:00 -0400 Subject: [PATCH 100/236] Changed default values for interp_only and fill The defaults values for interp_only and fill arguments are now None and then bound to an empty list and dictionary, respectively, in the function. --- dgp/lib/etc.py | 8 +++++++- 1 file changed, 7 insertions(+), 1 deletion(-) diff --git a/dgp/lib/etc.py b/dgp/lib/etc.py index 73d5db6..8f811a7 100644 --- a/dgp/lib/etc.py +++ b/dgp/lib/etc.py @@ -8,7 +8,7 @@ def align_frames(frame1, frame2, align_to='left', interp_method='time', - interp_only=[], fill={}, item='both'): + interp_only=None, fill=None, item='both'): # TODO: Is there a more appropriate place for this function? # TODO: Add ability to specify interpolation method per column. # TODO: Ensure that dtypes are preserved unless interpolated. @@ -65,6 +65,12 @@ def align_frames(frame1, frame2, align_to='left', interp_method='time', When frames do not overlap, and if an incorrect `align_to` argument is given. """ + if interp_only is None: + interp_only = [] + + if fill is None: + fill = {} + def fill_nans(frame): # TODO: Refactor this function to be less repetitive if hasattr(frame, 'columns'): From a37bd6447c582bae0e4f8eb92a10e3b2ba355c81 Mon Sep 17 00:00:00 2001 From: Chris Bertinato Date: Fri, 15 Jun 2018 08:57:24 -0400 Subject: [PATCH 101/236] Swapped assert_almost_equals for pytest.approx --- tests/test_transform.py | 7 +++---- 1 file changed, 3 insertions(+), 4 deletions(-) diff --git a/tests/test_transform.py b/tests/test_transform.py index b0ef6e0..7bd2f98 100644 --- a/tests/test_transform.py +++ b/tests/test_transform.py @@ -1,6 +1,5 @@ # coding: utf-8 import pytest -from nose.tools import assert_almost_equals import pandas as pd import numpy as np from functools import partial @@ -129,7 +128,7 @@ def test_eotvos(self, trajectory_data): for i, value in enumerate(eotvos_a['eotvos']): if 1 < i < len(result_eotvos) - 2: try: - assert_almost_equals(value, result_eotvos[i], places=2) + assert value == pytest.approx(result_eotvos[i], rel=1e-2) except AssertionError: print("Invalid assertion at data line: {}".format(i)) raise AssertionError @@ -152,7 +151,7 @@ def test_free_air_correction(self, trajectory_data): } g = TransformGraph(graph=transform_graph) res = g.execute() - np.testing.assert_array_almost_equal(expected, res['fac'], decimal=8) + assert expected == pytest.approx(res['fac'], rel=1e-8) # check that the indices are equal assert test_input.index.identical(res['fac'].index) @@ -174,7 +173,7 @@ def test_latitude_correction(self, trajectory_data): g = TransformGraph(graph=transform_graph) res = g.execute() - np.testing.assert_array_almost_equal(expected, res['lat_corr'], decimal=8) + assert expected == pytest.approx(res['lat_corr'], rel=1e-8) # check that the indexes are equal assert test_input.index.identical(res['lat_corr'].index) From 0cabbde70e1286d8ecf624c0302b74f129dd21e5 Mon Sep 17 00:00:00 2001 From: Chris Bertinato Date: Fri, 15 Jun 2018 08:57:54 -0400 Subject: [PATCH 102/236] Minor change in taylor_fir for pylint warning --- dgp/lib/transform/derivatives.py | 4 +--- 1 file changed, 1 insertion(+), 3 deletions(-) diff --git a/dgp/lib/transform/derivatives.py b/dgp/lib/transform/derivatives.py index d0e5276..b0ad52a 100644 --- a/dgp/lib/transform/derivatives.py +++ b/dgp/lib/transform/derivatives.py @@ -26,8 +26,6 @@ def central_difference(data_in, n=1, order=2, dt=0.1): def taylor_fir(data_in, n=1, dt=0.1): """ 10th order Taylor series FIR differentiator """ coeff = np.array([1 / 1260, -5 / 504, 5 / 84, -5 / 21, 5 / 6, 0, -5 / 6, 5 / 21, -5 / 84, 5 / 504, -1 / 1260]) - x = data_in for _ in range(1, n + 1): - y = convolve(x, coeff, mode='same') - x = y + y = convolve(data_in, coeff, mode='same') return y * (1/dt)**n From b398a0c7523ff8c33782a6d945a1490549e1c591 Mon Sep 17 00:00:00 2001 From: Zachery Brady Date: Mon, 18 Jun 2018 11:33:56 -0600 Subject: [PATCH 103/236] Basic integration of new Transform Interface. Simple proof of concept integrating transform graphs into the GUI. User can now execute a pre-defined transform graph from the flight sub-tab. Also removed some deprecated files (empty file transform.py and examples/filter_graph.py which relied on PyQtGraph flowcharts) --- .gitignore | 1 + dgp/gui/plotting/plotters.py | 6 ++ dgp/gui/ui/transform_tab_widget.ui | 74 ++++++++++++++ dgp/gui/workspaces/TransformTab.py | 82 ++++++++++++++-- dgp/lib/transform.py | 0 ...sing.py => daniels_processing_workflow.py} | 0 examples/filter_graph.py | 96 ------------------- 7 files changed, 157 insertions(+), 102 deletions(-) create mode 100644 dgp/gui/ui/transform_tab_widget.ui delete mode 100644 dgp/lib/transform.py rename examples/{SimpleProcessing.py => daniels_processing_workflow.py} (100%) delete mode 100644 examples/filter_graph.py diff --git a/.gitignore b/.gitignore index 17dc5cf..f3dcd14 100644 --- a/.gitignore +++ b/.gitignore @@ -12,6 +12,7 @@ scratch/ venv/ docs/build/ .cache/ +.pytest_cache/ # Specific Directives examples/local* diff --git a/dgp/gui/plotting/plotters.py b/dgp/gui/plotting/plotters.py index 0bf6e55..8c5cdc9 100644 --- a/dgp/gui/plotting/plotters.py +++ b/dgp/gui/plotting/plotters.py @@ -65,6 +65,12 @@ def __init__(self, rows=2, cols=1, sharex=True, sharey=False, grid=True, def plots(self) -> List[AbstractSeriesPlotter]: return self.widget.plots + def __getattr__(self, item): + try: + return getattr(self.widget, item) + except AttributeError: + raise AttributeError("Plot Widget has no Attribute: ", item) + class PqtLineSelectPlot(QtCore.QObject): """New prototype Flight Line selection plot using Pyqtgraph as the diff --git a/dgp/gui/ui/transform_tab_widget.ui b/dgp/gui/ui/transform_tab_widget.ui new file mode 100644 index 0000000..5f9717e --- /dev/null +++ b/dgp/gui/ui/transform_tab_widget.ui @@ -0,0 +1,74 @@ + + + TransformInterface + + + + 0 + 0 + 1000 + 500 + + + + + 1 + 0 + + + + Form + + + + QLayout::SetNoConstraint + + + + + + 0 + 0 + + + + false + + + 0 + + + false + + + + Transforms + + + + + + + + + + + + Transform + + + + + + + + Properties + + + + + + + + + diff --git a/dgp/gui/workspaces/TransformTab.py b/dgp/gui/workspaces/TransformTab.py index 56e35be..4263b84 100644 --- a/dgp/gui/workspaces/TransformTab.py +++ b/dgp/gui/workspaces/TransformTab.py @@ -1,22 +1,92 @@ # -*- coding: utf-8 -*- -from PyQt5.QtWidgets import QGridLayout +from PyQt5.QtCore import Qt +from PyQt5.QtWidgets import QVBoxLayout, QWidget, QComboBox + +import pandas as pd +import numpy as np +from pyqtgraph import PlotWidget from dgp.lib.types import DataSource +from dgp.lib.transform.transform_graphs import SyncGravity, AirbornePost, TransformGraph +from dgp.lib.enums import DataTypes +from dgp.gui.plotting.plotters import TransformPlot from . import BaseTab, Flight +from ..ui.transform_tab_widget import Ui_TransformInterface + + +class TransformWidget(QWidget, Ui_TransformInterface): + def __init__(self, flight): + super().__init__() + self.setupUi(self) + + self._flight = flight + self._plot = TransformPlot() + self.hlayout.addWidget(self._plot.widget, Qt.AlignLeft | Qt.AlignTop) + + self.transform.addItems(['Sync Gravity', 'Airborne Post']) + + self._trajectory = self._flight.get_source(DataTypes.TRAJECTORY) + self._gravity = self._flight.get_source(DataTypes.GRAVITY) + + self.bt_execute_transform.clicked.connect(self.execute_transform) + + @property + def transform(self) -> QComboBox: + return self.cb_transform_select + + @property + def plot(self): + return self._plot + + def execute_transform(self): + if self._trajectory is None or self._gravity is None: + print("Missing trajectory or gravity") + return + + print("Executing transform") + c_transform = self.transform.currentText().lower() + if c_transform == 'sync gravity': + print("Running sync grav transform") + elif c_transform == 'airborne post': + print("Running airborne post transform") + trajectory = self._trajectory.load() + graph = AirbornePost(trajectory, self._gravity.load(), 0, 0) + print("Executing graph") + results = graph.execute() + print(results.keys()) + + time = pd.Series(trajectory.index.astype(np.int64) / 10 ** 9, index=trajectory.index, name='unix_time') + output_frame = pd.concat([time, trajectory[['lat', 'long', 'ell_ht']], + results['aligned_eotvos'], + results['aligned_kin_accel'], results['lat_corr'], + results['fac'], results['total_corr'], + results['abs_grav'], results['corrected_grav']], + axis=1) + output_frame.columns = ['unix_time', 'lat', 'lon', 'ell_ht', 'eotvos', + 'kin_accel', 'lat_corr', 'fac', 'total_corr', + 'vert_accel', 'gravity'] + + print(output_frame.describe()) + # self.plot.add_series(output_frame['eotvos']) + # self.plot.add_series(output_frame['gravity']) + # self.plot.add_series(output_frame['fac']) + self.plot.add_series(output_frame['vert_accel']) + # self.plot.add_series(output_frame['total_corr']) class TransformTab(BaseTab): + """Sub-tab displayed within Flight tab interface. Displays interface for selecting + Transform chains and plots for displaying the resultant data sets. + """ _name = "Transform" def __init__(self, label: str, flight: Flight): super().__init__(label, flight) - self._layout = QGridLayout() - self.setLayout(self._layout) - self.fc = None - self.plots = [] - self._nodes = {} + self._layout = QVBoxLayout() + self._layout.addWidget(TransformWidget(flight)) + self.setLayout(self._layout) def data_modified(self, action: str, dsrc: DataSource): """Slot: Called when a DataSource has been added/removed from the diff --git a/dgp/lib/transform.py b/dgp/lib/transform.py deleted file mode 100644 index e69de29..0000000 diff --git a/examples/SimpleProcessing.py b/examples/daniels_processing_workflow.py similarity index 100% rename from examples/SimpleProcessing.py rename to examples/daniels_processing_workflow.py diff --git a/examples/filter_graph.py b/examples/filter_graph.py deleted file mode 100644 index acdcec2..0000000 --- a/examples/filter_graph.py +++ /dev/null @@ -1,96 +0,0 @@ -from pyqtgraph.flowchart import Flowchart -from pyqtgraph.Qt import QtGui, QtCore -import pyqtgraph as pg -import pyqtgraph.flowchart.library as fclib -from pyqtgraph.flowchart.library.common import CtrlNode - -from scipy import signal -import numpy as np -import sys -import pandas as pd - - -class LowpassFilter(CtrlNode): - nodeName = "LowpassFilter" - uiTemplate = [ - ('cutoff', 'spin', {'value': 0.5, 'step': 0.1, 'bounds': [0.0, None]}), - ('sample', 'spin', {'value': 0.5, 'step': 0.1, 'bounds': [0.0, None]}) - ] - - def __init__(self, name): - terminals = { - 'dataIn': dict(io='in'), - 'dataOut': dict(io='out'), - } - - CtrlNode.__init__(self, name, terminals=terminals) - - def process(self, dataIn, display=True): - fc = self.ctrls['cutoff'].value() - fs = self.ctrls['sample'].value() - filter_len = 1 / fc - nyq = fs / 2.0 - wn = fc / nyq - n = int(2.0 * filter_len * fs) - taps = signal.firwin(n, wn, window='blackman', nyq=nyq) - filtered_data = signal.filtfilt(taps, 1.0, dataIn, padtype='even', padlen=80) - result = pd.Series(filtered_data, index=dataIn.index) - return {'dataOut': result} - - -app = QtGui.QApplication([]) -win = QtGui.QMainWindow() -cw = QtGui.QWidget() -win.setCentralWidget(cw) -layout = QtGui.QGridLayout() -cw.setLayout(layout) - -fc = Flowchart(terminals={ - 'dataIn': {'io': 'in'}, - 'dataOut': {'io': 'out'} -}) - -layout.addWidget(fc.widget(), 0, 0, 2, 1) -pw1 = pg.PlotWidget() -pw2 = pg.PlotWidget() -layout.addWidget(pw1, 0, 1) -layout.addWidget(pw2, 1, 1) - -win.show() - -fs = 100 # Hz -frequencies = [1.2, 3, 5, 7] # Hz -start = 0 -stop = 10 # s -rng = pd.date_range('1/9/2017', periods=fs * (stop - start), freq='L') -t = np.linspace(start, stop, fs * (stop - start)) -sig = np.zeros(len(t)) -for f in frequencies: - sig += np.sin(2 * np.pi * f * t) -ts = pd.Series(sig, index=rng) - -fc.setInput(dataIn=ts) - -plotList = {'Top Plot': pw1, 'Bottom Plot': pw2} - -pw1Node = fc.createNode('PlotWidget', pos=(0, -150)) -pw1Node.setPlotList(plotList) -pw1Node.setPlot(pw1) - -pw2Node = fc.createNode('PlotWidget', pos=(150, -150)) -pw2Node.setPlotList(plotList) -pw2Node.setPlot(pw2) - -fclib.registerNodeType(LowpassFilter, [('Filters',)]) - -fnode = fc.createNode('LowpassFilter', pos=(0,0)) -fnode.ctrls['cutoff'].setValue(5) -fnode.ctrls['sample'].setValue(100) - -fc.connectTerminals(fc['dataIn'], fnode['dataIn']) -fc.connectTerminals(fc['dataIn'], pw1Node['In']) -fc.connectTerminals(fnode['dataOut'], pw2Node['In']) -fc.connectTerminals(fnode['dataOut'], fc['dataOut']) - -if (sys.flags.interactive != 1) or not hasattr(QtCore, 'PYQT_VERSION'): - QtGui.QApplication.instance().exec_() \ No newline at end of file From b3dd94244d8bf606faae45b0940b883f2f3f4097 Mon Sep 17 00:00:00 2001 From: Zachery Brady Date: Mon, 18 Jun 2018 15:45:10 -0600 Subject: [PATCH 104/236] CLN: Deleted deprecated plotting code. --- dgp/gui/plotting/flightregion.py | 74 -- dgp/gui/plotting/mplutils.py | 810 ------------------- dgp/gui/plotting/plotters.py | 1302 ++---------------------------- tests/test_plotters.py | 152 ---- 4 files changed, 74 insertions(+), 2264 deletions(-) delete mode 100644 dgp/gui/plotting/flightregion.py delete mode 100644 dgp/gui/plotting/mplutils.py delete mode 100644 tests/test_plotters.py diff --git a/dgp/gui/plotting/flightregion.py b/dgp/gui/plotting/flightregion.py deleted file mode 100644 index 9cac30c..0000000 --- a/dgp/gui/plotting/flightregion.py +++ /dev/null @@ -1,74 +0,0 @@ -# coding: utf-8 - -import PyQt5.QtWidgets as QtWidgets -import PyQt5.QtCore as QtCore -from PyQt5.QtWidgets import QMenu, QAction -from pyqtgraph.graphicsItems.LinearRegionItem import LinearRegionItem -from pyqtgraph.graphicsItems.TextItem import TextItem - - -class LinearFlightRegion(LinearRegionItem): - """Custom LinearRegionItem class to provide override methods on various - click events.""" - def __init__(self, values=(0, 1), orientation=None, brush=None, - movable=True, bounds=None, parent=None, label=None): - super().__init__(values=values, orientation=orientation, brush=brush, - movable=movable, bounds=bounds) - - self.parent = parent - self._grpid = None - self._label_text = label or '' - self.label = TextItem(text=self._label_text, color=(0, 0, 0), - anchor=(0, 0)) - # self.label.setPos() - self._menu = QMenu() - self._menu.addAction(QAction('Remove', self, triggered=self._remove)) - self._menu.addAction(QAction('Set Label', self, - triggered=self._getlabel)) - self.sigRegionChanged.connect(self._move_label) - - def mouseClickEvent(self, ev): - if not self.parent.selection_mode: - return - if ev.button() == QtCore.Qt.RightButton and not self.moving: - ev.accept() - pos = ev.screenPos().toPoint() - pop_point = QtCore.QPoint(pos.x(), pos.y()) - self._menu.popup(pop_point) - return True - else: - return super().mouseClickEvent(ev) - - def _move_label(self, lfr): - x0, x1 = self.getRegion() - - self.label.setPos(x0, 0) - - def _remove(self): - try: - self.parent.remove(self) - except AttributeError: - return - - def _getlabel(self): - text, result = QtWidgets.QInputDialog.getText(None, - "Enter Label", - "Line Label:", - text=self._label_text) - if not result: - return - try: - self.parent.set_label(self, str(text).strip()) - except AttributeError: - return - - def set_label(self, text): - self.label.setText(text) - - @property - def group(self): - return self._grpid - - @group.setter - def group(self, value): - self._grpid = value diff --git a/dgp/gui/plotting/mplutils.py b/dgp/gui/plotting/mplutils.py deleted file mode 100644 index 1c1e3ad..0000000 --- a/dgp/gui/plotting/mplutils.py +++ /dev/null @@ -1,810 +0,0 @@ -# coding: utf-8 - -# PROTOTYPE for new Axes Manager class - -import logging -from itertools import cycle, count, chain -from typing import Union, Tuple, Dict, List -from datetime import datetime, timedelta - -import PyQt5.QtCore as QtCore - -from pandas import Series -from matplotlib.figure import Figure -from matplotlib.axes import Axes -from matplotlib.dates import DateFormatter, date2num, num2date -from matplotlib.ticker import AutoLocator, ScalarFormatter, Formatter -from matplotlib.lines import Line2D -from matplotlib.patches import Patch, Rectangle -from matplotlib.gridspec import GridSpec -from matplotlib.backend_bases import MouseEvent, PickEvent -from mpl_toolkits.axes_grid1.inset_locator import inset_axes - -from dgp.lib.etc import gen_uuid - -__all__ = ['StackedAxesManager', 'PatchManager', 'RectanglePatchGroup'] -_log = logging.getLogger(__name__) -EDGE_PROX = 0.002 - -""" -Notes/Thoughts WIP: - -What to do in instances where 2 data sets with greatly different X-ranges are -plotted together? Or some way to disallow this/screen when importing gps/grav. -E.g. when importing a GPS file when gravity is already present show warning -if the min/max values respectively differ by some percentage? -""" -COLOR_CYCLE = ['red', 'blue', 'green', 'orange', 'purple'] - - -def _pad(xy0: float, xy1: float, pct=0.05): - """Pads a given x/y limit pair by the specified percentage (as - float), and returns a tuple of the new values. - - Parameters - ---------- - xy0, xy1 : float - Limit values that correspond to the left/bottom and right/top - X or Y Axes limits respectively. - pct : float, optional - Percentage value by which to pad the supplied limits. - Default: 0.05 (5%) - """ - magnitude = abs(xy1) - abs(xy0) - pad = magnitude * pct - return xy0 - pad, xy1 + pad - - -# TODO: This is not general enough -# Plan to create a StackedMPLWidget and StackedPGWidget which will contain -# Matplotlib subplot-Axes or pyqtgraph PlotItems. -# The xWidget will provide the Qt Widget to be added to the GUI, and provide -# methods for interacting with plots on specific rows. -class StackedAxesManager: - """ - StackedAxesManager is used to generate and manage a subplots on a - Matplotlib Figure. A specified number of subplots are generated and - displayed in rows (possibly add ability to add columns later). - The AxesManager provides an API to draw lines on specified axes rows, - and provides a means to track and update/change lines based on their - original Pandas Series data. - - Parameters - ---------- - figure : Figure - MPL Figure to create subplots (Axes) objects upon - rows : int, Optional - Number of rows of subplots to generate on the figure. - Default is 1 - xformatter : matplotlib.ticker.Formatter, optional - Supply a custom ticker Formatter for the x-axis, or use the default - DateFormatter. - - Notes (WIP) - ----------- - - AxesManager should create and manage a set of subplots displayed in a - rows. A twin-x axis is then 'stacked' behind each base axes on each row. - The manager should be general enough to support a number of use-cases: - 1. Line Grab Plot interface - user clicks on plots to add a rectangle - patch which is drawn at the same x-loc on all axes in the group - (uses PatchGroup class) - This plot uses Date indexes - 2. Transform Plot - 2 or more stacked plots used to plot data, - possibly indexed against a Date, or possibly indexed by lat/longitude. - This plot would not require line selection patches. - - In future would like to add ability to have a data 'inspection' line - - i.e. move mouse over and a text box will pop up with a vertical - line through the data, showing the value at intersection - don't know - proper name for that - - Add ability to switch xformatter without re-instantiating the Manager? - e.g. Plotting gravity vs time, then want to clear off time data and - plot grav vs long. Maybe auto-clear all lines/data from plot and - switch x-axis formatter. - - """ - def __init__(self, figure, rows=1, xformatter=None): - self.figure = figure - self.axes = {} # type: Dict[int: (Axes, Axes)] - self._axes_color = {} - self._inset_axes = {} - - self._lines = {} - self._line_data = {} - self._line_lims = {} - self._line_id = count(start=1, step=1) - - self._base_x_lims = None - self._rows = rows - self._cols = 1 - self._padding = 0.05 - - self._xformatter = xformatter or DateFormatter('%H:%M:%S') - - spec = GridSpec(nrows=self._rows, ncols=self._cols) - - x0 = date2num(datetime.now()) - x1 = date2num(datetime.now() + timedelta(hours=1)) - self._ax0 = figure.add_subplot(spec[0]) # type: Axes - self.set_xlim(x0, x1) - - for i in range(0, rows): - if i == 0: - ax = self._ax0 - else: - ax = figure.add_subplot(spec[i], sharex=self._ax0) - if i == rows - 1: - ax.xaxis.set_major_locator(AutoLocator()) - ax.xaxis.set_major_formatter(self._xformatter) - else: - for lbl in ax.get_xticklabels(): - lbl.set_visible(False) - - ax.autoscale(False) - ax.grid(True) - twin = ax.twinx() - self.axes[i] = ax, twin - self._axes_color[i] = cycle(COLOR_CYCLE) - - def __len__(self): - """Return number of primary Axes managed by this Class""" - return len(self.axes) - - def __contains__(self, axes): - flat = chain(*self.axes.values()) - return axes in flat - - def __getitem__(self, index) -> Tuple[Axes, Axes]: - """Return (Axes, Twin) pair at the given row index.""" - if index not in self.axes: - raise IndexError - return self.axes[index] - - # Experimental - def add_inset_axes(self, row, position='upper right', height='15%', - width='15%', labels=False, **kwargs) -> Axes: - """Add an inset axes on the base axes at given row - Default is to create an inset axes in the upper right corner, with height and width of 15% of the parent. - - This inset axes can be used for example to show the zoomed-in position of the main graph in relation to the - overall data. - """ - try: - return self._inset_axes[row] - except KeyError: - pass - - position_map = { - 'upper right': 1, - 'upper left': 2, - 'lower left': 3, - 'lower right': 4, - 'right': 5, - 'center left': 6, - 'center right': 7, - 'lower center': 8, - 'upper center': 9, - 'center': 10 - } - base_ax = self.get_axes(row) - if labels: - axes_kwargs = kwargs - else: - axes_kwargs = dict(xticklabels=[], yticklabels=[]) - axes_kwargs.update(kwargs) - - axes = inset_axes(base_ax, height, width, loc=position_map.get( - position, 1), axes_kwargs=axes_kwargs) - self._inset_axes[row] = axes - return axes - - def get_inset_axes(self, row) -> Union[Axes, None]: - """Retrieve Inset Axes for the primary Axes at specified row. - Note - support is currently only for a single inset axes per row.""" - return self._inset_axes.get(row, None) - - def get_axes(self, row, twin=False) -> Axes: - """Explicity retrieve an Axes from the given row, returning the Twin - axes if twin is True - - Notes - ----- - It is obviously possible to plot directly to the Axes returned by - this method, however you then give up the state tracking mechanisms - provided by the StackedAxesManager class, and will be responsible for - manually manipulating and scaling the Axes. - """ - ax0, ax1 = self.axes[row] - if twin: - return ax1 - return ax0 - - def add_series(self, series, row=0, uid=None, redraw=True, - fit='common', **plot_kwargs): - """ - Add and track a Pandas data Series to the specified subplot. - - Notes - ----- - Note on behavior, add_series will automatically select the least - populated axes of the pair (primary and twin-x) to plot the new - channel on, and if it is a tie will default to the primary. - - Parameters - ---------- - series : Series - Pandas data Series with index and values, to be plotted as x and y - respectively - row : int - Row index of the Axes to plot on - uid : str, optional - Optional UID to reference series by within Axes Manager, - else numerical ID will be assigned and returned by this function. - redraw : bool - If True, call figure.canvas.draw(), else the caller must ensure - to redraw the canvas at some point. - fit : EXPERIMENTAL - Keyword to determine x-axis fitting when data sets are different - lengths. - Options: (WIP) - common : fit x-axis to show common/overlapping data - What if there is no overlap? - inclusive : fit x-axis to all data - first : fit x-axis based on the first plotted data set - last : re-fit x-axis on latest data set - plot_kwargs : dict, optional - Optional dictionary of keyword arguments to be passed to the - Axes.plot method - - Returns - ------- - Union[str, int] : - UID of plotted channel - - """ - axes, twin = self.axes[row] - # Select least populated Axes - if len(axes.lines) <= len(twin.lines): - ax = axes - else: - ax = twin - - uid = uid or next(self._line_id) - - # Set the x-limits range if it hasn't been set yet - # We're assuming that all plotted data will conform to the same - # time-span currently, this behavior may need to change (esp if we're - # not dealing with time?) - x0, x1 = series.index.min(), series.index.max() - try: - x0 = date2num(x0) - x1 = date2num(x1) - except AttributeError: - pass - - if self._base_x_lims is None: - self.set_xlim(x0, x1) - self._base_x_lims = x0, x1 - else: - # TODO: Test/consider this logic - is it the desired behavior - # e.g. two datasets (gps/grav) where gravity is 1hr longer than GPS, - # should we auto-scale the x-axis to fit all of the data, - # or to the shortest? maybe give an option? - base_x0, base_x1 = self._base_x_lims - min_x0 = min(base_x0, x0) - max_x1 = max(base_x1, x1) - self.set_xlim(min_x0, max_x1) - self._base_x_lims = min_x0, max_x1 - - y0, y1 = series.min(), series.max() - - color = plot_kwargs.get('color', None) or next(self._axes_color[row]) - line = ax.plot(series.index, series.values, color=color, - **plot_kwargs)[0] - - self._lines[uid] = line - self._line_data[line] = series - self._line_lims[line] = x0, x1, y0, y1 - - ax.set_ylim(*_pad(y0, y1)) - - if redraw: - self.figure.canvas.draw() - - return uid - - def remove_series(self, *series_ids, redraw=True): - invalids = [] - for uid in series_ids: - if uid not in self._lines: - invalids.append(uid) - continue - - line = self._lines[uid] # type: Line2D - ax = line.axes # type: Axes - - line.remove() - del self._line_data[line] - del self._lines[uid] - - if len(ax.lines) == 0: - ax.set_ylim(-1, 1) - else: - # Rescale y if we allow more than 1 line per Axes - pass - - if redraw: - self.figure.canvas.draw() - - if invalids: - raise ValueError("Invalid UID's passed to remove_series: {}" - .format(invalids)) - - def get_ylim(self, idx, twin=False): - if twin: - return self.axes[idx + self._rows].get_ylim() - return self.axes[idx].get_ylim() - - # TODO: Resample logic - def subsample(self, step): - """Resample all lines in all Axes by slicing with step.""" - - pass - - def set_xlim(self, left: float, right: float, padding=None): - """Set the base Axes xlims to the specified float values.""" - if padding is None: # Explicitly check for None, as 0 should be valid - padding = self._padding - self._ax0.set_xlim(*_pad(left, right, padding)) - - def get_x_ratio(self): - """Returns the ratio of the current plot width to the base plot width""" - if self._base_x_lims is None: - return 1.0 - base_w = self._base_x_lims[1] - self._base_x_lims[0] - cx0, cx1 = self.axes[0].get_xlim() - curr_w = cx1 - cx0 - return curr_w / base_w - - def reset_view(self, x_margin=None, y_margin=None): - """Reset limits of each Axes and Twin Axes to show entire data within - them""" - # Test the min/max logic here - if self._base_x_lims is None: - return - min_x0, max_x1 = self._base_x_lims - for uid, line in self._lines.items(): - ax = line.axes # type: Axes - data = self._line_data[line] # type: Series - x0, x1, y0, y1 = self._line_lims[line] - ax.set_ylim(*_pad(y0, y1)) - - if not min_x0: - min_x0 = max(min_x0, x0) - else: - min_x0 = min(min_x0, x0) - max_x1 = max(max_x1, x1) - - self.set_xlim(min_x0, max_x1) - - -class PatchManager: - def __init__(self, parent=None): - self.patchgroups = [] # type: List[RectanglePatchGroup] - self._active = None - self._x0 = None # X location when active group was selected - self.parent = parent - - @property - def active(self) -> Union[None, 'RectanglePatchGroup']: - return self._active - - @property - def groups(self): - """Return a sorted list of patchgroups by patch x location.""" - return sorted(self.patchgroups, key=lambda pg: pg.x) - - def valid_click(self, xdata, proximity=0.05): - """Return True if xdata is a valid location to place a new patch - group, False if it is too close to an existing patch.""" - pass - - def add_group(self, group: 'RectanglePatchGroup'): - self.patchgroups.append(group) - - def select(self, xdata, inner=True) -> bool: - self.deselect() - for pg in self.groups: - if xdata in pg: - pg.animate(xdata) - self._active = pg - self._x0 = xdata - break - else: - self._x0 = None - - return self._active is not None - - def deselect(self) -> None: - if self._active is not None: - self._active.unanimate() - self._active = None - - def rescale_patches(self): - for group in self.patchgroups: - group.fit_height() - - def onmotion(self, event: MouseEvent) -> None: - if event.xdata is None: - return - if self.active is None: - self.highlight_edge(event.xdata) - event.canvas.draw() - else: - dx = event.xdata - self._x0 - self.active.shift_x(dx) - - def highlight_edge(self, xdata: float) -> None: - """ - Called on motion event if a patch isn't selected. Highlight the edge - of a patch if it is under the mouse location. - Return all other edges to black - - Parameters - ---------- - xdata : float - Mouse x-location in plot data coordinates - - """ - edge_grp = None - self.parent.setCursor(QtCore.Qt.ArrowCursor) - for group in self.groups: - edge = group.get_edge(xdata, inner=False) - if edge in ('left', 'right'): - - edge_grp = group - self.parent.setCursor(QtCore.Qt.SizeHorCursor) - group.set_edge(edge, 'red', select=False) - break - else: - self.parent.setCursor(QtCore.Qt.PointingHandCursor) - - for group in self.patchgroups: - if group is edge_grp: - continue - else: - group.set_edge('', 'black', select=False) - - -class RectanglePatchGroup: - """ - Group related matplotlib Rectangle Patches which share an x axis on - different Axes/subplots. - Current use case is for Flight-line selection rectangles, but this could - be expanded. - - - Notes/TODO: - ----------- - Possibly create base PatchGroup class with specialized classes for - specific functions e.g. Flight-line selection, and data pointer (show - values on data with vertical line through) - - """ - def __init__(self, *patches, label: str='', uid=None): - self.uid = uid or gen_uuid('ptc') - self.label = label - self._modified = False - self.animated = False - - self._patches = {i: patch for i, patch in enumerate(patches)} - self._p0 = patches[0] # type: Rectangle - self._labels = {} # type: Dict[int, Annotation] - self._bgs = {} - # Store x location on animation for delta movement - self._x0 = 0 - # Original width must be stored for stretch - self._width = 0 - self._stretching = None - - self.fit_height() - - def __contains__(self, x): - return self.x <= x <= self.x + self.width - - @property - def modified(self): - return self._modified - - @property - def stretching(self): - return self._stretching - - @property - def width(self): - """Return the width of the patches in this group (all patches have - same width)""" - return self._p0.get_width() - - @property - def x(self): - if self._p0 is None: - return None - return self._p0.get_x() - - def animate(self, xdata=None) -> None: - """ - Animate all artists contained in this PatchGroup, and record the x - location of the group. - Matplotlibs Artist.set_animated serves to remove the artists from the - canvas bbox, so that we can copy a rasterized bbox of the rest of the - canvas and then blit it back as we move or modify the animated artists. - This means that a complete redraw only has to be done for the - selected artists, not the entire canvas. - - """ - _log.debug("Animating patches") - if self._p0 is None: - raise AttributeError("No patches exist") - self._x0 = self._p0.get_x() - self._width = self._p0.get_width() - edge = self.get_edge(xdata, inner=False) - self.set_edge(edge, color='red', select=True) - - for i, patch in self._patches.items(): # type: int, Rectangle - patch.set_animated(True) - try: - self._labels[i].set_animated(True) - except KeyError: - pass - canvas = patch.figure.canvas - # Need to draw the canvas once after animating to remove the - # animated patch from the bbox - but this introduces significant - # lag between the mouse click and the beginning of the animation. - # canvas.draw() - bg = canvas.copy_from_bbox(patch.axes.bbox) - self._bgs[i] = bg - canvas.restore_region(bg) - patch.axes.draw_artist(patch) - canvas.blit(patch.axes.bbox) - - self.animated = True - return - - def unanimate(self) -> None: - if not self.animated: - return - for patch in self._patches.values(): - patch.set_animated(False) - for label in self._labels.values(): - label.set_animated(False) - - self._bgs = {} - self._stretching = None - self.animated = False - self._modified = False - - # def add_patch(self, plot_index: int, patch: Rectangle): - # if not len(self._patches): - # Record attributes of first added patch for reference - # self._p0 = patch - # self._patches[plot_index] = patch - - def hide(self): - for item in chain(self._patches.values(), self._labels.values()): - item.set_visible(False) - - def show(self): - for item in chain(self._patches.values(), self._labels.values()): - item.set_visible(True) - - def contains(self, xdata, prox=EDGE_PROX): - """Check if an x-coordinate is contained within the bounds of this - patch group, with an optional proximity modifier.""" - prox = self._scale_prox(prox) - x0 = self._p0.get_x() - width = self._p0.get_width() - return x0 - prox <= xdata <= x0 + width + prox - - - def remove(self): - """Delete this patch group and associated labels from the axes's""" - self.unanimate() - for item in chain(self._patches.values(), self._labels.values()): - item.remove() - self._p0 = None - - def start(self): - """Return the start x-location of this patch group as a Date Locator""" - for patch in self._patches.values(): - return num2date(patch.get_x()) - - def stop(self): - """Return the stop x-location of this patch group as a Data Locator""" - if self._p0 is None: - return None - return num2date(self._p0.get_x() + self._p0.get_width()) - - def get_edge(self, xdata, prox=EDGE_PROX, inner=False): - """Get the edge that the mouse is in proximity to, or None if it is - not.""" - left = self._p0.get_x() - right = left + self._p0.get_width() - prox = self._scale_prox(prox) - - if left - (prox * int(not inner)) <= xdata <= left + prox: - return 'left' - if right - prox <= xdata <= right + (prox * int(not inner)): - return 'right' - return None - - def set_edge(self, edge: str, color: str, select: bool=False): - """Set the given edge color, and set the Group stretching factor if - select""" - if edge not in {'left', 'right'}: - color = (0.0, 0.0, 0.0, 0.1) # black, 10% alpha - self._stretching = None - elif select: - _log.debug("Setting stretch to: {}".format(edge)) - self._stretching = edge - for patch in self._patches.values(): # type: Rectangle - if patch.get_edgecolor() != color: - patch.set_edgecolor(color) - patch.axes.draw_artist(patch) - - def set_label(self, label: str, index=None) -> None: - """ - Set the label on these patches. Centered vertically and horizontally. - - Parameters - ---------- - label : str - String to label the patch group with. - index : Union[int, None], optional - The patch index to set the label of. If None, all patch labels will - be set to the same value. - - """ - if label is None: - # Fixes a label being displayed as 'None' - label = '' - - self.label = label - - if index is not None: - patches = {index: self._patches[index]} - else: - patches = self._patches - - for i, patch in patches.items(): - px = patch.get_x() + patch.get_width() * 0.5 - ylims = patch.axes.get_ylim() - py = ylims[0] + abs(ylims[1] - ylims[0]) * 0.5 - - annotation = patch.axes.annotate(label, - xy=(px, py), - weight='bold', - fontsize=6, - ha='center', - va='center', - annotation_clip=False) - self._labels[i] = annotation - self._modified = True - - def fit_height(self) -> None: - """Adjust Height based on axes limits""" - for i, patch in self._patches.items(): - ylims = patch.axes.get_ylim() - height = abs(ylims[1]) + abs(ylims[0]) - patch.set_y(ylims[0]) - patch.set_height(height) - patch.axes.draw_artist(patch) - self._move_label(i, *self._patch_center(patch)) - - def shift_x(self, dx) -> None: - """ - Move or stretch patches by dx, action depending on activation - location i.e. when animate was called on the group. - - Parameters - ---------- - dx : float - Delta x, positive or negative float value to move or stretch the - group - - """ - if self._stretching in ('left', 'right'): - return self._stretch(dx) - for i in self._patches: - patch = self._patches[i] # type: Rectangle - patch.set_x(self._x0 + dx) - - canvas = patch.figure.canvas # type: FigureCanvas - canvas.restore_region(self._bgs[i]) - # Must draw_artist after restoring region, or they will be hidden - patch.axes.draw_artist(patch) - - cx, cy = self._patch_center(patch) - self._move_label(i, cx, cy) - - canvas.blit(patch.axes.bbox) - self._modified = True - - def _stretch(self, dx) -> None: - if self._p0 is None: - return None - width = self._width - if self._stretching == 'left' and width - dx > 0: - for i, patch in self._patches.items(): - patch.set_x(self._x0 + dx) - patch.set_width(width - dx) - elif self._stretching == 'right' and width + dx > 0: - for i, patch in self._patches.items(): - patch.set_width(width + dx) - else: - return - - for i, patch in self._patches.items(): - axes = patch.axes - cx, cy = self._patch_center(patch) - canvas = patch.figure.canvas - canvas.restore_region(self._bgs[i]) - axes.draw_artist(patch) - self._move_label(i, cx, cy) - canvas.blit(axes.bbox) - - self._modified = True - - def _move_label(self, index, x, y) -> None: - """ - Move labels in this group to new position x, y - - Parameters - ---------- - index : int - Axes index of the label to move - x, y : int - x, y location to move the label - - """ - label = self._labels.get(index, None) - if label is None: - return - label.set_position((x, y)) - label.axes.draw_artist(label) - - def _scale_prox(self, pct: float): - """ - Take a decimal percentage and return the apropriate Axes unit value - based on the x-axis limits of the current plot. - This ensures that methods using a proximity selection modifier behave - the same, independant of the x-axis scale or size. - - Parameters - ---------- - pct : float - Percent value expressed as float - - Returns - ------- - float - proximity value converted to Matplotlib Axes scale value - - """ - if self._p0 is None: - return 0 - x0, x1 = self._p0.axes.get_xlim() - return (x1 - x0) * pct - - @staticmethod - def _patch_center(patch) -> Tuple[int, int]: - """Utility method to calculate the horizontal and vertical center - point of the specified patch""" - cx = patch.get_x() + patch.get_width() * 0.5 - ylims = patch.axes.get_ylim() - cy = ylims[0] + abs(ylims[1] - ylims[0]) * 0.5 - return cx, cy - - diff --git a/dgp/gui/plotting/plotters.py b/dgp/gui/plotting/plotters.py index 8c5cdc9..7f2025e 100644 --- a/dgp/gui/plotting/plotters.py +++ b/dgp/gui/plotting/plotters.py @@ -4,40 +4,21 @@ Definitions for task specific plot interfaces. """ import logging -from collections import namedtuple from itertools import count from typing import Dict, Tuple, Union, List -from datetime import timedelta -import numpy as np import pandas as pd import PyQt5.QtCore as QtCore import PyQt5.QtWidgets as QtWidgets - -from PyQt5.QtWidgets import QSizePolicy, QAction, QWidget, QMenu, QToolBar -from PyQt5.QtCore import pyqtSignal, QMimeData -from PyQt5.QtGui import QCursor, QDropEvent, QDragEnterEvent, QDragMoveEvent -from matplotlib.backends.backend_qt5agg import ( - FigureCanvasQTAgg as FigureCanvas, NavigationToolbar2QT) -from matplotlib.figure import Figure -from matplotlib.backend_bases import MouseEvent, PickEvent -from matplotlib.patches import Rectangle -from matplotlib.axes import Axes -from matplotlib.dates import DateFormatter, num2date, date2num -from matplotlib.ticker import AutoLocator -from matplotlib.lines import Line2D -from matplotlib.text import Annotation - -import dgp.lib.types as types -from dgp.lib.project import Flight -from dgp.lib.types import DataChannel, LineUpdate +from PyQt5.QtWidgets import QMenu, QAction +from PyQt5.QtCore import pyqtSignal +from dgp.lib.types import LineUpdate from dgp.lib.etc import gen_uuid -from .mplutils import * -from .backends import BasePlot, PYQTGRAPH, MATPLOTLIB, AbstractSeriesPlotter -from .flightregion import LinearFlightRegion +from .backends import BasePlot, PYQTGRAPH, AbstractSeriesPlotter import pyqtgraph as pg from pyqtgraph.graphicsItems.LinearRegionItem import LinearRegionItem +from pyqtgraph.graphicsItems.TextItem import TextItem _log = logging.getLogger(__name__) @@ -72,6 +53,75 @@ def __getattr__(self, item): raise AttributeError("Plot Widget has no Attribute: ", item) +class LinearFlightRegion(LinearRegionItem): + """Custom LinearRegionItem class to provide override methods on various + click events.""" + def __init__(self, values=(0, 1), orientation=None, brush=None, + movable=True, bounds=None, parent=None, label=None): + super().__init__(values=values, orientation=orientation, brush=brush, + movable=movable, bounds=bounds) + + self.parent = parent + self._grpid = None + self._label_text = label or '' + self.label = TextItem(text=self._label_text, color=(0, 0, 0), + anchor=(0, 0)) + # self.label.setPos() + self._menu = QMenu() + self._menu.addAction(QAction('Remove', self, triggered=self._remove)) + self._menu.addAction(QAction('Set Label', self, + triggered=self._getlabel)) + self.sigRegionChanged.connect(self._move_label) + + def mouseClickEvent(self, ev): + if not self.parent.selection_mode: + return + if ev.button() == QtCore.Qt.RightButton and not self.moving: + ev.accept() + pos = ev.screenPos().toPoint() + pop_point = QtCore.QPoint(pos.x(), pos.y()) + self._menu.popup(pop_point) + return True + else: + return super().mouseClickEvent(ev) + + def _move_label(self, lfr): + x0, x1 = self.getRegion() + + self.label.setPos(x0, 0) + + def _remove(self): + try: + self.parent.remove(self) + except AttributeError: + return + + def _getlabel(self): + text, result = QtWidgets.QInputDialog.getText(None, + "Enter Label", + "Line Label:", + text=self._label_text) + if not result: + return + try: + self.parent.set_label(self, str(text).strip()) + except AttributeError: + return + + def set_label(self, text): + self.label.setText(text) + + @property + def group(self): + return self._grpid + + @group.setter + def group(self, value): + self._grpid = value + + + + class PqtLineSelectPlot(QtCore.QObject): """New prototype Flight Line selection plot using Pyqtgraph as the backend. @@ -281,1207 +331,3 @@ def _update_done(self): pd.to_datetime(x0), pd.to_datetime(x1), None) self.line_changed.emit(update) self._line_update = None - - - - -class BasePlottingCanvas(FigureCanvas): - """ - BasePlottingCanvas sets up the basic Qt FigureCanvas parameters, and is - designed to be subclassed for different plot types. - Mouse events are connected to the canvas here, and the handlers should be - overriden in sub-classes to provide custom actions. - """ - def __init__(self, parent=None, width=8, height=4, dpi=100): - super().__init__(Figure(figsize=(width, height), dpi=dpi, - tight_layout=True)) - - self.setParent(parent) - super().setSizePolicy(QSizePolicy.Expanding, QSizePolicy.Expanding) - super().updateGeometry() - - self.figure.canvas.mpl_connect('pick_event', self.onpick) - self.figure.canvas.mpl_connect('button_press_event', self.onclick) - self.figure.canvas.mpl_connect('button_release_event', self.onrelease) - self.figure.canvas.mpl_connect('motion_notify_event', self.onmotion) - - def onclick(self, event: MouseEvent): - pass - - def onrelease(self, event: MouseEvent): - pass - - def onmotion(self, event: MouseEvent): - pass - - def onpick(self, event: PickEvent): - pass - - -# This code will eventually be replaced with newer classes based on -# interoperability between MPL and PQG -EDGE_PROX = 0.005 - -# Monkey patch the MPL Nav toolbar home button. We'll provide custom action -# by attaching a event listener to the toolbar action trigger. -# Save the default home method in case another plot desires the default behavior -NT_HOME = NavigationToolbar2QT.home -NavigationToolbar2QT.home = lambda *args: None - - -class AxesGroup: - """ - AxesGroup conceptually groups a set of sub-plot Axes together, and allows - for easier operations on multiple Axes at once, especially when dealing - with plot Patches and Annotations. - - - Backend: MATPLOTLIB - - Parameters - ---------- - *axes : List[Axes] - Positional list of 1 or more Axes (sub-plots) to add to this AxesGroup - twin : bool, Optional - If True, create 'twin' subplots for each of the passed plots, sharing - the X-Axis. - Default : False - - Attributes - ---------- - axes : Dict[int, Axes] - Dictionary of Axes objects keyed by int Index - twins : Union[Dict[int, Axes], None] - If the AxesGroup is initialized with twin=True, the resultant twinned - Axes objects are stored here, keyed by int Index matching that of - their parent Axes. - patches : Dict[str, PatchGroup] - Dictionary of PatchGroups keyed by the groups UID - PatchGroups contain partnered Rectangle Patches which are displayed - at the same location across all active primary Axes. - patch_pct : Float - Percentage width of Axes to initially create Patch Rectangles - expressed as a Float value. - - """ - - def __init__(self, *axes, twin=False, parent=None): - assert len(axes) >= 1 - self.parent = parent - self.axes = dict(enumerate(axes)) # type: Dict[int, Axes] - self._ax0 = self.axes[0] - if twin: - self.twins = {i: ax.twinx() for i, ax in enumerate(axes)} - else: - self.twins = None - - self.patches = {} # type: Dict[str, PatchGroup] - self.patch_pct = 0.05 - - self._selected = None # type: PatchGroup - self._select_loc = None - self._stretch = None - self._highlighted = None # type: PatchGroup - - # Map ax index to x/y limits of original data - self._base_ax_limits = {} - - self._xmin = 1 - self._xmax = 2 - - def set_xminmax(self, xmin, xmax): - """This isn't ideal but will do until re-write of AxesGroup - Set the min/max plot limits based on data, so that we don't have to - calculate them within the Axes Group. - Used in the go_home method. - """ - self._xmin = xmin - self._xmax = max(xmax, self._xmax) - - def __contains__(self, item: Axes): - if item in self.axes.values(): - return True - if self.twins is None: - return False - if item in self.twins.values(): - return True - - def __getattr__(self, item): - """ - Used to get methods in the selected PatchGroup of this AxesGroup, - if there is one. If there is no selection, we return an empty lambda - function which takes args/kwargs and returns None. - - This functionality may not be necesarry, as we are dealing with most - of the selected operatiosn within the AxesGroup now. - """ - if hasattr(self._selected, item): - return getattr(self._selected, item) - else: - return lambda *x, **y: None - - @property - def all_axes(self): - """Return a list of all Axes objects, including Twin Axes (if they - exist)""" - axes = list(self.axes.values()) - if self.twins is not None: - axes.extend(self.twins.values()) - return axes - - def select(self, xdata, prox=EDGE_PROX, inner=False): - """ - Select any patch group at the specified xdata location. Return True - if a PatchGroup was selected, False if there was no group to select. - Use prox and inner to specify tolerance of selection. - - Parameters - ---------- - xdata - prox : float - Add/subtract the specified width from the right/left edge of the - patch groups when checking for a hit. - inner : bool - Specify whether a patch should enter stretch mode only if the - click is inside its left/right bounds +/- prox. Or if False, - set the patch to stretch if the click is just outside of the - rectangle (within proximity) - - Returns - ------- - bool: - True if PatchGroup selected - False if no PatchGroup at xdata location - - """ - for pg in self.patches.values(): - if pg.contains(xdata, prox): - self._selected = pg - edge = pg.get_edge(xdata, prox=prox, inner=inner) - pg.set_edge(edge, 'red', select=True) - pg.animate() - self._select_loc = xdata - self.parent.setCursor(QtCore.Qt.ClosedHandCursor) - return True - else: - return False - - def deselect(self) -> None: - """ - Deselect the active PatchGroup (if there is one), and reset the cursor. - """ - if self._selected is not None: - self._selected.unanimate() - self._selected = None - self.parent.setCursor(QtCore.Qt.PointingHandCursor) - - @property - def active(self) -> Union['PatchGroup', None]: - return self._selected - - def highlight_edge(self, xdata: float) -> None: - """ - Called on motion event if a patch isn't selected. Highlight the edge - of a patch if it is under the mouse location. - Return all other edges to black - - Parameters - ---------- - xdata : float - Mouse x-location in plot data coordinates - - """ - self.parent.setCursor(QtCore.Qt.ArrowCursor) - if not len(self.patches): - return - for patch in self.patches.values(): # type: PatchGroup - if patch.contains(xdata): - edge = patch.get_edge(xdata, inner=False) - if edge is not None: - self.parent.setCursor(QtCore.Qt.SizeHorCursor) - else: - self.parent.setCursor(QtCore.Qt.PointingHandCursor) - patch.set_edge(edge, 'red') - else: - patch.set_edge('', 'black') - - def onmotion(self, event: MouseEvent): - if event.inaxes not in self: - return - if self._selected is None: - self.highlight_edge(event.xdata) - event.canvas.draw() - else: - dx = event.xdata - self._select_loc - self._selected.move_patches(dx) - - def go_home(self): - """Autoscale the axes back to the data limits, and rescale patches. - - Keep in mind that the x-axis is shared, and so only need to be set - once if there is data. - """ - for ax in self.all_axes: - for line in ax.lines: # type: Line2D - y = line.get_ydata() - ax.set_ylim(y.min(), y.max()) - - try: - print("Setting ax0 xlim to min: {} max: {}".format(self._xmin, - self._xmax)) - self._ax0.xaxis_date() - self._ax0.set_xlim(self._xmin, self._xmax) - except: - _log.exception("Error setting ax0 xlim") - - self.rescale_patches() - - def rescale_patches(self): - """Rescales all Patch Groups to fit their Axes y-limits""" - for pg in self.patches.values(): - pg.rescale_patches() - - def get_axes(self, index) -> (Axes, bool): - """ - Get an Axes object at the specified index, or a twin if the Axes at - the index already has a line plotted in it. - Boolean is returned with the Axes, specifying whether the returned - Axes is a Twin or not. - - Parameters - ---------- - index : int - Index of the Axes to retrieve. - - Returns - ------- - Tuple[Axes, bool]: - Axes object and boolean value - bool : False if Axes is the base (non-twin) Axes, - True if it is a twin - - """ - ax = self.axes[index] - if self.twins is not None and len(ax.lines): - return self.twins[index], True - return ax, False - - def add_patch(self, xdata, start=None, stop=None, uid=None, label=None) \ - -> Union['PatchGroup', None]: - """Add a flight line patch at the specified x-coordinate on all axes - When a user clicks on the plot, we want to place a rectangle, - centered on the mouse click x-location, and spanning across any - primary axes in the AxesGroup. - - Parameters - ---------- - xdata : int - X location on the Axes to add a new patch - start, stop : float, optional - If specified, draw a custom patch from saved data - uid : str, optional - If specified, assign the patch group a custom UID - label : str, optional - If specified, add the label text as an annotation on the created - patch group - - Returns - ------- - New Patch Group : PatchGroup - Returns newly created group of 'partnered' or linked Rectangle - Patches as a PatchGroup - If the PatchGroup is not created sucessfully (i.e. xdata was too - close to another patch) None is returned. - - """ - if start and stop: - # Reapply a saved patch from start and stop positions of the rect - x0 = date2num(start) - x1 = date2num(stop) - width = x1 - x0 - else: - xlim = self._ax0.get_xlim() # type: Tuple - width = (xlim[1] - xlim[0]) * np.float64(self.patch_pct) - x0 = xdata - width / 2 - - # Check if click is too close to existing patch groups - for group in self.patches.values(): - if group.contains(xdata, prox=.04): - raise ValueError("Flight patch too close to add") - - pg = PatchGroup(uid=uid, parent=self) - for i, ax in self.axes.items(): - ylim = ax.get_ylim() - height = abs(ylim[1]) + abs(ylim[0]) - rect = Rectangle((x0, ylim[0]), width, height*2, alpha=0.1, - picker=True, edgecolor='black', linewidth=2) - patch = ax.add_patch(rect) - patch.set_picker(True) - ax.draw_artist(patch) - pg.add_patch(i, patch) - - if label is not None: - pg.set_label(label) - self.patches[pg.uid] = pg - return pg - - def remove_pg(self, pg: 'PatchGroup'): - del self.patches[pg.uid] - - -class PatchGroup: - """ - Contain related patches that are cloned across multiple sub-plots - """ - def __init__(self, label: str='', uid=None, parent=None): - self.parent = parent # type: AxesGroup - self.uid = uid or gen_uuid('ptc') - self.label = label - self.modified = False - self.animated = False - - self._patches = {} # type: Dict[int, Rectangle] - self._p0 = None # type: Rectangle - self._labels = {} # type: Dict[int, Annotation] - self._bgs = {} - # Store x location on animation for delta movement - self._x0 = 0 - # Original width must be stored for stretch - self._width = 0 - self._stretching = None - - @property - def x(self): - if self._p0 is None: - return None - return self._p0.get_x() - - @property - def stretching(self): - return self._stretching - - @property - def width(self): - """Return the width of the patches in this group (all patches have - same width)""" - return self._p0.get_width() - - def hide(self): - for patch in self._patches.values(): - patch.set_visible(False) - for label in self._labels.values(): - label.set_visible(False) - - def show(self): - for patch in self._patches.values(): - patch.set_visible(True) - for label in self._labels.values(): - label.set_visible(True) - - def contains(self, xdata, prox=EDGE_PROX): - """Check if an x-coordinate is contained within the bounds of this - patch group, with an optional proximity modifier.""" - prox = self._scale_prox(prox) - x0 = self._p0.get_x() - width = self._p0.get_width() - return x0 - prox <= xdata <= x0 + width + prox - - def add_patch(self, plot_index: int, patch: Rectangle): - if not len(self._patches): - # Record attributes of first added patch for reference - self._p0 = patch - self._patches[plot_index] = patch - - def remove(self): - """Delete this patch group and associated labels from the axes's""" - self.unanimate() - for patch in self._patches.values(): - patch.remove() - for label in self._labels.values(): - label.remove() - self._p0 = None - if self.parent is not None: - self.parent.remove_pg(self) - - def start(self): - """Return the start x-location of this patch group as a Date Locator""" - for patch in self._patches.values(): - return num2date(patch.get_x()) - - def stop(self): - """Return the stop x-location of this patch group as a Data Locator""" - if self._p0 is None: - return None - return num2date(self._p0.get_x() + self._p0.get_width()) - - def get_edge(self, xdata, prox=EDGE_PROX, inner=False): - """Get the edge that the mouse is in proximity to, or None if it is - not.""" - left = self._p0.get_x() - right = left + self._p0.get_width() - prox = self._scale_prox(prox) - - if left - (prox * int(not inner)) <= xdata <= left + prox: - return 'left' - if right - prox <= xdata <= right + (prox * int(not inner)): - return 'right' - return None - - def set_edge(self, edge: str, color: str, select: bool=False): - """Set the given edge color, and set the Group stretching factor if - select""" - if edge not in {'left', 'right'}: - color = (0.0, 0.0, 0.0, 0.1) # black, 10% alpha - self._stretching = None - elif select: - _log.debug("Setting stretch to: {}".format(edge)) - self._stretching = edge - for patch in self._patches.values(): # type: Rectangle - if patch.get_edgecolor() != color: - patch.set_edgecolor(color) - patch.axes.draw_artist(patch) - else: - break - - def animate(self) -> None: - """ - Animate all artists contained in this PatchGroup, and record the x - location of the group. - Matplotlibs Artist.set_animated serves to remove the artists from the - canvas bbox, so that we can copy a rasterized bbox of the rest of the - canvas and then blit it back as we move or modify the animated artists. - This means that a complete redraw only has to be done for the - selected artists, not the entire canvas. - - """ - _log.debug("Animating patches") - if self._p0 is None: - raise AttributeError("No patches exist") - self._x0 = self._p0.get_x() - self._width = self._p0.get_width() - - for i, patch in self._patches.items(): # type: int, Rectangle - patch.set_animated(True) - try: - self._labels[i].set_animated(True) - except KeyError: - pass - canvas = patch.figure.canvas - # Need to draw the canvas once after animating to remove the - # animated patch from the bbox - but this introduces significant - # lag between the mouse click and the beginning of the animation. - # canvas.draw() - bg = canvas.copy_from_bbox(patch.axes.bbox) - self._bgs[i] = bg - canvas.restore_region(bg) - patch.axes.draw_artist(patch) - canvas.blit(patch.axes.bbox) - - self.animated = True - return - - def unanimate(self) -> None: - if not self.animated: - return - for patch in self._patches.values(): - patch.set_animated(False) - for label in self._labels.values(): - label.set_animated(False) - - self._bgs = {} - self._stretching = False - self.animated = False - return - - def set_label(self, label: str) -> None: - """ - Set the label on these patches. Centered vertically and horizontally. - - Parameters - ---------- - label : str - String to label the patch group with. - - """ - if label is None: - # Fixes a label being displayed as 'None' - label = '' - - self.label = label - - for i, patch in self._patches.items(): - px = patch.get_x() + patch.get_width() * 0.5 - ylims = patch.axes.get_ylim() - py = ylims[0] + abs(ylims[1] - ylims[0]) * 0.5 - - annotation = patch.axes.annotate(label, - xy=(px, py), - weight='bold', - fontsize=6, - ha='center', - va='center', - annotation_clip=False) - self._labels[i] = annotation - self.modified = True - - def move_patches(self, dx) -> None: - """ - Move or stretch patches by dx, action depending on activation - location i.e. when animate was called on the group. - - Parameters - ---------- - dx : float - Delta x, positive or negative float value to move or stretch the - group - - """ - if self._stretching is not None: - return self._stretch(dx) - for i in self._patches: - patch = self._patches[i] # type: Rectangle - patch.set_x(self._x0 + dx) - - canvas = patch.figure.canvas # type: FigureCanvas - canvas.restore_region(self._bgs[i]) - # Must draw_artist after restoring region, or they will be hidden - patch.axes.draw_artist(patch) - - cx, cy = self._patch_center(patch) - self._move_label(i, cx, cy) - - canvas.blit(patch.axes.bbox) - self.modified = True - - def rescale_patches(self) -> None: - """Adjust Height based on new axes limits""" - for i, patch in self._patches.items(): - ylims = patch.axes.get_ylim() - height = abs(ylims[1]) + abs(ylims[0]) - patch.set_y(ylims[0]) - patch.set_height(height) - patch.axes.draw_artist(patch) - self._move_label(i, *self._patch_center(patch)) - - def _stretch(self, dx) -> None: - if self._p0 is None: - return None - width = self._width - if self._stretching == 'left' and width - dx > 0: - for i, patch in self._patches.items(): - patch.set_x(self._x0 + dx) - patch.set_width(width - dx) - elif self._stretching == 'right' and width + dx > 0: - for i, patch in self._patches.items(): - patch.set_width(width + dx) - else: - return - - for i, patch in self._patches.items(): - axes = patch.axes - cx, cy = self._patch_center(patch) - canvas = patch.figure.canvas - canvas.restore_region(self._bgs[i]) - axes.draw_artist(patch) - self._move_label(i, cx, cy) - - canvas.blit(axes.bbox) - - self.modified = True - - def _move_label(self, index, x, y) -> None: - """ - Move labels in this group to new position x, y - - Parameters - ---------- - index : int - Axes index of the label to move - x, y : int - x, y location to move the label - - """ - label = self._labels.get(index, None) - if label is None: - return - label.set_position((x, y)) - label.axes.draw_artist(label) - - def _scale_prox(self, pct: float): - """ - Take a decimal percentage and return the apropriate Axes unit value - based on the x-axis limits of the current plot. - This ensures that methods using a proximity selection modifier behave - the same, independant of the x-axis scale or size. - - Parameters - ---------- - pct : float - Percent value expressed as float - - Returns - ------- - float - proximity value converted to Matplotlib Axes scale value - - """ - if self._p0 is None: - return 0 - x0, x1 = self._p0.axes.get_xlim() - return (x1 - x0) * pct - - @staticmethod - def _patch_center(patch) -> Tuple[int, int]: - """Utility method to calculate the horizontal and vertical center - point of the specified patch""" - cx = patch.get_x() + patch.get_width() * 0.5 - ylims = patch.axes.get_ylim() - cy = ylims[0] + abs(ylims[1] - ylims[0]) * 0.5 - return cx, cy - - -# Deprecated in favor of PyQtGraph plot engine for performance -class LineGrabPlot(BasePlottingCanvas, QWidget): - """ - LineGrabPlot implements BasePlottingCanvas and provides an onclick method to - select flight line segments. - - Attributes - ---------- - ax_grp : AxesGroup - - plotted : bool - Boolean flag - True if any axes have been plotted/drawn to - - """ - - line_changed = pyqtSignal(LineUpdate) - resample = pyqtSignal(int) - - def __init__(self, flight: Flight, rows: int=1, title=None, parent=None): - super().__init__(parent=parent) - # Set initial sub-plot layout - self._plots = self.set_plots(rows=rows, sharex=True, resample=True) - self.ax_grp = AxesGroup(*self._plots.values(), twin=True, parent=self) - self.figure.canvas.mpl_connect('pick_event', self.onpick) - - # Experimental - self.setAcceptDrops(False) - # END Experimental - self.plotted = False - self._zooming = False - self._panning = False - self._flight = flight # type: Flight - - # Resampling variables - self._series = {} # {uid: pandas.Series, ...} - self._xwidth = 0 - self._ratio = 100 - # Define resampling steps based on integer percent range - # TODO: Future: enable user to define custom ranges/steps - self._steps = { - range(0, 15): slice(None, None, 1), - range(15, 35): slice(None, None, 5), - range(35, 75): slice(None, None, 10), - range(75, 101): slice(None, None, 15) - } - - # Map of Line2D objects active in sub-plots, keyed by data UID - self._lines = {} # {uid: Line2D, ...} - - if title: - self.figure.suptitle(title, y=1) - else: - self.figure.suptitle(flight.name, y=1) - - # create context menu - self._pop_menu = QMenu(self) - self._pop_menu.addAction( - QAction('Remove', self, triggered=self._remove_patch)) - self._pop_menu.addAction( - QAction('Set Label', self, triggered=self._label_patch)) - - self._rs_timer = QtCore.QTimer(self) - self._rs_timer.timeout.connect(self.resizeDone) - self._toolbar = None - - def __len__(self): - return len(self._plots) - - def resizeEvent(self, event): - """ - Here we override the resizeEvent handler in order to hide the plot - and toolbar widgets when the window is being resized (for performance - reasons). - self._rs_timer is started with the specified timeout (in ms), at which - time the widgets are shown again (resizeDone method). Thus if a user is - dragging the window size handle, and stops for 250ms, the contents - will be re-drawn, then rehidden again when the user continues resizing. - """ - self._rs_timer.start(200) - self.hide() - super().resizeEvent(event) - - def resizeDone(self): - self._rs_timer.stop() - self.show() - - @property - def axes(self): - return [ax for ax in self._plots.values()] - - def set_plots(self, rows: int, cols=1, sharex=True, resample=False): - """ - Sets the figure layout with a number of sub-figures and twin figures - as specified in the arguments. - The sharex and sharey params control the behavior of the sub-plots, - with sharex=True all plots will be linked together on the X-Axis - which is useful for showing/comparing linked data sets. - The sharey param in fact generates an extra sub-plot/Axes object for - each plot, overlayed on top of the original. This allows the plotting of - multiple data sets of different magnitudes on the same chart, - displaying a scale for each on the left and right edges. - - Parameters - ---------- - rows : int - Number plots to generate for display in a vertical stack - cols : int, optional - For now, cols will always be 1 (ignored param) - In future would like to enable dynamic layouts with multiple - columns as well as rows - sharex : bool, optional - Default True. All plots will share their X axis with each other. - resample : bool, optional - If true, enable dynamic resampling on each Axes, that is, - down-sample data when zoomed completely out, and reduce the - down-sampling as the data is viewed closer. - - Returns - ------- - Dict[int, Axes] - Mapping of axes index (int) to subplot (Axes) objects - - """ - self.figure.clf() - cols = 1 # Hardcoded to 1 until future implementation - plots = {} - - # Note: When adding subplots, the first index is 1 - for i in range(1, rows+1): - if sharex and i > 1: - plot = self.figure.add_subplot(rows, cols, i, sharex=plots[0]) - else: - plot = self.figure.add_subplot(rows, cols, i) # type: Axes - plot.xaxis.set_major_locator(AutoLocator()) - plot.set_xlim(1, 2) - plot.xaxis.set_major_formatter(DateFormatter('%H:%M:%S')) - if resample: - plot.callbacks.connect('xlim_changed', self._xlim_resample) - plot.callbacks.connect('ylim_changed', self._on_ylim_changed) - - plot.grid(True) - plots[i-1] = plot - - return plots - - def _remove_patch(self): - """PyQtSlot: - Called by QAction menu item to remove the currently selected - PatchGroup""" - if self.ax_grp.active is not None: - pg = self.ax_grp.active - self.ax_grp.remove() - self.line_changed.emit( - LineUpdate(flight_id=self._flight.uid, - action='remove', - uid=pg.uid, - start=pg.start(), stop=pg.stop(), - label=None)) - self.ax_grp.deselect() - self.draw() - return - - def _label_patch(self): - """PyQtSlot: - Called by QAction menu item to add a label to the currently selected - PatchGroup""" - if self.ax_grp.active is None: - return - - pg = self.ax_grp.active - # Replace custom SetLineLabelDialog with builtin QInputDialog - text, ok = QtWidgets.QInputDialog.getText(self, - "Enter Label", - "Line Label:", - text=pg.label) - if not ok: - self.ax_grp.deselect() - return - - label = str(text).strip() - pg.set_label(label) - update = LineUpdate(flight_id=self._flight.uid, action='modify', - uid=pg.uid, start=pg.start(), stop=pg.stop(), - label=pg.label) - self.line_changed.emit(update) - self.ax_grp.deselect() - self.draw() - return - - def _xlim_resample(self, axes: Axes) -> None: - """ - Called on change of x-limits of a given Axes. This method will - re-sample line data in every linked Axes based on the zoom level. - This is done for performance reasons, as with large data-sets - interacting with the plot can become very slow. - Re-sampling is done by slicing the data and selecting points at every - x steps, determined by the current ratio of the plot width to - original width. - Ratio ranges and steps are defined in the instance _steps dictionary. - - TODO: In future user should be able to override the re-sampling step - lookup and be able to dynamically turn off/on the resampling of data. - - """ - if self._panning: - return - if self._xwidth == 0: - return - - x0, x1 = axes.get_xlim() - ratio = int((x1 - x0) / self._xwidth * 100) - if ratio == self._ratio: - _log.debug("Resample ratio hasn't changed") - return - else: - self._ratio = ratio - - for rs in self._steps: - if ratio in rs: - resample = self._steps[rs] - break - else: - resample = slice(None, None, 1) - - self.resample.emit(resample.step) - self._resample = resample - - for uid, line in self._lines.items(): # type: str, Line2D - series = self._series.get(uid) - sample = series[resample] - line.set_xdata(sample.index) - line.set_ydata(sample.values) - line.axes.draw_artist(line) - - self.draw() - - def _on_ylim_changed(self, changed: Axes) -> None: - if self._panning or self._zooming: - self.ax_grp.rescale_patches() - return - - def home(self, *args): - """Autoscale Axes in the ax_grp to fit all data, then draw.""" - self.ax_grp.go_home() - self.draw() - - def add_patch(self, start, stop, uid, label=None): - if not self.plotted: - self.draw() - self.ax_grp.add_patch(0, start=start, stop=stop, uid=uid, label=label) - - def draw(self): - super().draw() - self.plotted = True - - # Issue #36 Enable data/channel selection and plotting - def add_series(self, dc: types.DataChannel, axes_idx: int=0, draw=True): - """ - Add a DataChannel (containing a pandas.Series) to the specified axes - at axes_idx. - If a data channel has already been plotted in the specified axes, - we will attempt to get the Twin axes to plot the next series, - enabling dual Y axis scales for the data. - - Parameters - ---------- - dc : types.DataChannel - DataChannel object to plot - axes_idx : int - Index of the axes objec to plot on. - draw : bool, optional - Optionally, set to False to defer drawing after plotting of the - DataChannel - - """ - if len(self._lines) == 0: - # If there are 0 plot lines we need to reset the locator/formatter - _log.debug("Adding locator and major formatter to empty plot.") - self.axes[0].xaxis.set_major_locator(AutoLocator()) - self.axes[0].xaxis.set_major_formatter(DateFormatter('%H:%M:%S')) - - axes, twin = self.ax_grp.get_axes(axes_idx) - - if twin: - color = 'orange' - else: - color = 'blue' - - series = dc.series() - axes.autoscale(False) - - # Testing custom scaling: - # This should allow scaling to data without having to worry about - # patches - dt_margin = timedelta(minutes=2) - minx, maxx = series.index.min(), series.index.max() - self.ax_grp.set_xminmax(date2num(minx), date2num(maxx)) - miny, maxy = series.min(), series.max() - print("X Values from data: {}, {}".format(minx, maxx)) - print("Y Values from data: {}, {}".format(miny, maxy)) - axes.set_xlim(date2num(minx - dt_margin), date2num(maxx + dt_margin)) - axes.set_ylim(miny * 1.05, maxy * 1.05) - - line_artist = axes.plot(series.index, series.values, - color=color, label=dc.label)[0] - - # Set values for x-ratio resampling - x0, x1 = axes.get_xlim() - width = x1 - x0 - self._xwidth = max(self._xwidth, width) - - axes.tick_params('y', colors=color) - axes.set_ylabel(dc.label, color=color) - - self._series[dc.uid] = series # Store reference to series for resample - self._lines[dc.uid] = line_artist - - # self.ax_grp.relim() - self.ax_grp.rescale_patches() - if draw: - self.figure.canvas.draw() - - def remove_series(self, dc: types.DataChannel): - """ - Remove a line series from the plot area. - If the channel cannot be located on any axes, None is returned - - Parameters - ---------- - dc : types.DataChannel - Reference of the DataChannel to remove from the plot - - Returns - ------- - - """ - if dc.uid not in self._lines: - return - line = self._lines[dc.uid] # type: Line2D - - axes = line.axes - axes.autoscale(False) - axes.lines.remove(line) - axes.tick_params('y', colors='black') - axes.set_ylabel('') - axes.set_ylim(-1, 1) - - self.ax_grp.rescale_patches() - del self._lines[dc.uid] - del self._series[dc.uid] - - if not len(self._lines): - _log.warning("No Lines on any axes.") - # self.axes[0].xaxis.set_major_locator(NullLocator()) - # self.axes[0].xaxis.set_major_formatter(NullFormatter()) - - self.draw() - - def get_series_by_label(self, label: str): - pass - - def onpick(self, event: PickEvent): - print("Pick event handled for artist: ", event.artist) - - def onclick(self, event: MouseEvent): - if self._zooming or self._panning: - # Possibly hide all artists here to speed up panning - # for line in self._lines.values(): # type: Line2D - # line.set_visible(False) - return - if not self.plotted or not len(self._lines): - # If there is nothing plotted, don't allow user click interaction - return - # If the event didn't occur within an Axes, ignore it - if event.inaxes not in self.ax_grp: - return - - # Else, process the click event - active = self.ax_grp.select(event.xdata, inner=False) - - if not active: - pass - - if event.button == 3: - # Right Click - if not active: - return - cursor = QCursor() - self._pop_menu.popup(cursor.pos()) - return - - elif event.button == 1: - if active: - # We've selected and activated an existing group - return - # Else: Create a new PatchGroup - try: - pg = self.ax_grp.add_patch(event.xdata) - except ValueError: - _log.warning("Failed to create patch, too close to another?") - return - else: - _log.info("Created new PatchGroup, uid: {}".format(pg.uid)) - self.draw() - - if self._flight.uid is not None: - self.line_changed.emit( - LineUpdate(flight_id=self._flight.uid, - action='add', - uid=pg.uid, - start=pg.start(), - stop=pg.stop(), - label=None)) - return - else: - # Middle Click - # _log.debug("Middle click is not supported.") - return - - def onmotion(self, event: MouseEvent) -> None: - """ - Event Handler: Pass any motion events to the AxesGroup to handle, - as long as the user is not Panning or Zooming. - - Parameters - ---------- - event : MouseEvent - Matplotlib MouseEvent object with event parameters - - Returns - ------- - None - - """ - if self._zooming or self._panning: - return - return self.ax_grp.onmotion(event) - - def onrelease(self, event: MouseEvent) -> None: - """ - Event Handler: Process event and emit any changes made to the active - Patch group (if any) upon mouse release. - - Parameters - ---------- - event : MouseEvent - Matplotlib MouseEvent object with event parameters - - Returns - ------- - None - - """ - if self._zooming or self._panning: - # for line in self._lines.values(): # type: Line2D - # line.set_visible(True) - self.ax_grp.rescale_patches() - self.draw() - return - if self.ax_grp.active is not None: - pg = self.ax_grp.active # type: PatchGroup - if pg.modified: - self.line_changed.emit( - LineUpdate(flight_id=self._flight.uid, - action='modify', - uid=pg.uid, - start=pg.start(), - stop=pg.stop(), - label=pg.label)) - pg.modified = False - self.ax_grp.deselect() - # self.ax_grp.active = None - - self.figure.canvas.draw() - - def toggle_zoom(self): - """Toggle plot zoom state, and disable panning state.""" - if self._panning: - self._panning = False - self._zooming = not self._zooming - - def toggle_pan(self): - """Toggle plot panning state, and disable zooming state.""" - if self._zooming: - self._zooming = False - self._panning = not self._panning - - # EXPERIMENTAL Drag-n-Drop handlers - # Future feature to enable dropping of Channels directly onto the plot. - def dragEnterEvent(self, event: QDragEnterEvent): - print("Drag entered widget") - event.acceptProposedAction() - - def dragMoveEvent(self, event: QDragMoveEvent): - print("Drag moved") - event.acceptProposedAction() - - def dropEvent(self, event: QDropEvent): - print("Drop detected") - event.acceptProposedAction() - print(event.source()) - print(event.pos()) - mime = event.mimeData() # type: QMimeData - print(mime) - print(mime.text()) - # END EXPERIMENTAL Drag-n-Drop - - def get_toolbar(self, parent=None) -> QToolBar: - """ - Get a Matplotlib Toolbar for the current plot instance, and set toolbar - actions (pan/zoom) specific to this plot. - We also override the home action (first by monkey-patching the - declaration in the NavigationToolbar class) as the MPL View stack method - provides inconsistent results with our code. - - toolbar.actions() supports indexing, with the following default - buttons at the specified index: - - 0: Home - 1: Back - 2: Forward - 4: Pan - 5: Zoom - 6: Configure Sub-plots - 7: Edit axis, curve etc.. - 8: Save the figure - - Parameters - ---------- - parent : QtWidget, optional - Optional Qt Parent for this object - - Returns - ------- - QtWidgets.QToolBar - Matplotlib Qt Toolbar used to control this plot instance - """ - if self._toolbar is None: - toolbar = NavigationToolbar2QT(self, parent=parent) - - toolbar.actions()[0].triggered.connect(self.home) - toolbar.actions()[4].triggered.connect(self.toggle_pan) - toolbar.actions()[5].triggered.connect(self.toggle_zoom) - self._toolbar = toolbar - return self._toolbar diff --git a/tests/test_plotters.py b/tests/test_plotters.py deleted file mode 100644 index 591bd94..0000000 --- a/tests/test_plotters.py +++ /dev/null @@ -1,152 +0,0 @@ -# coding: utf-8 - -import unittest -from pathlib import Path - -from matplotlib.dates import date2num -from matplotlib.lines import Line2D - -from dgp.lib.types import DataSource, DataChannel -from dgp.lib.gravity_ingestor import read_at1a -from dgp.lib.enums import DataTypes -from dgp.gui.plotting.mplutils import StackedAxesManager, _pad, COLOR_CYCLE -from dgp.gui.plotting.plotters import BasePlottingCanvas - - -class MockDataSource(DataSource): - def __init__(self, data, uid, filename, fields, dtype, x0, x1): - super().__init__(uid, filename, fields, dtype, x0, x1) - self._data = data - - # Patch load func to remove dependence on HDF5 storage for test - def load(self, field=None): - if field is not None: - return self._data[field] - return self._data - - -class BasicPlotter(BasePlottingCanvas): - def __init__(self, rows): - super().__init__() - self.axmgr = StackedAxesManager(self.figure, rows=rows) - - -class TestPlotters(unittest.TestCase): - def setUp(self): - grav_path = Path('tests/sample_data/test_data.csv') - self.df = read_at1a(str(grav_path)) - x0 = self.df.index.min() - x1 = self.df.index.max() - self.dsrc = MockDataSource(self.df, 'abc', grav_path.name, - self.df.keys(), DataTypes.GRAVITY, x0, x1) - self.grav_ch = DataChannel('gravity', self.dsrc) - self.cross_ch = DataChannel('cross_accel', self.dsrc) - self.long_ch = DataChannel('long_accel', self.dsrc) - self.plotter = BasicPlotter(rows=2) - self.mgr = self.plotter.axmgr - - def test_magic_methods(self): - """Test __len__ __contains__ __getitem__ methods.""" - # Test count of Axes - self.assertEqual(2, len(self.mgr)) - - # TODO: __contains__ in mgr changed to check Axes - grav_uid = self.mgr.add_series(self.grav_ch.series(), row=0) - # self.assertIn(grav_uid, self.mgr) - - # Be aware that the __getitem__ returns a tuple of (Axes, Axes) - self.assertEqual(self.mgr.get_axes(0, twin=False), self.mgr[0][0]) - - def test_min_max(self): - x0, x1 = self.dsrc.get_xlim() - x0_num = date2num(x0) - x1_num = date2num(x1) - self.assertIsInstance(x0_num, float) - self.assertEqual(736410.6114664351, x0_num) - self.assertIsInstance(x1_num, float) - self.assertEqual(736410.6116793981, x1_num) - - # Y-Limits are local to the x-span of the data being viewed. - # As such I don't think it makes sense to store the ylim value within - # the data source - - # self.assertIsNone(self.grav_ch._ylim) - # y0, y1 = self.grav_ch.get_ylim() - # self.assertEqual((y0, y1), self.grav_ch._ylim) - - # grav = self.df['gravity'] - # _y0 = grav.min() - # _y1 = grav.max() - # self.assertEqual(_y0, y0) - # self.assertEqual(_y1, y1) - - def test_axmgr_workflow(self): - """Test adding and removing series to/from the AxesManager - Verify correct setting of x/y plot limits.""" - ax = self.mgr.get_axes(0, twin=False) - twin = self.mgr.get_axes(0, twin=True) - - # ADD 1 - uid_1 = self.mgr.add_series(self.grav_ch.series(), row=0) - self.assertEqual(1, uid_1) - self.assertEqual(1, len(ax.lines)) - self.mgr.remove_series(uid_1) - self.assertEqual(0, len(ax.lines)) - self.assertEqual((-1, 1), ax.get_ylim()) - - # Test margin setting method which adds 5% padding to view of data - left, right = self.grav_ch.get_xlim() - left, right = _pad(date2num(left), date2num(right), self.mgr._padding) - self.assertEqual((left, right), ax.get_xlim()) - - # Series should be added to primary axes here as last line was removed - self.assertEqual(0, len(ax.lines)) - # ADD 2 - uid_2 = self.mgr.add_series(self.grav_ch.series(), row=0, - uid=self.grav_ch.uid) - self.assertEqual(self.grav_ch.uid, uid_2) - self.assertEqual(0, len(twin.lines)) - self.assertEqual(1, len(ax.lines)) - - # ADD 3 - uid_3 = self.mgr.add_series(self.cross_ch.series(), row=0) - line_3 = self.mgr._lines[uid_3] # type: Line2D - self.assertEqual(COLOR_CYCLE[2], line_3.get_color()) - - # Add 1 to row 2 - Verify independent color cycling - uid_4 = self.mgr.add_series(self.grav_ch.series(), row=1) - line_4 = self.mgr._lines[uid_4] - self.assertEqual(COLOR_CYCLE[0], line_4.get_color()) - - # Test attempt to remove invalid UID - with self.assertRaises(ValueError): - self.mgr.remove_series('uid_invalid', 7, 12, uid_3) - - def test_reset_view(self): - """Test view limit functionality when resetting view (home button)""" - # Zoom Box ((x0, x1), (y0, y1)) - zoom_area = ((500, 600), (-1, 0.5)) - - data = self.grav_ch.series() - data_x = date2num(data.index.min()), date2num(data.index.max()) - data_y = data.min(), data.max() - - data_uid = self.mgr.add_series(data, row=0) - ax0 = self.mgr.get_axes(0, twin=False) - self.assertEqual(1, len(ax0.lines)) - - ax0.set_xlim(*zoom_area[0]) - ax0.set_ylim(*zoom_area[1]) - self.assertEqual(zoom_area[0], ax0.get_xlim()) - self.assertEqual(zoom_area[1], ax0.get_ylim()) - - self.mgr.reset_view() - # Assert view limits are equal to data limits + 5% padding after reset - self.assertEqual(_pad(*data_x), ax0.get_xlim()) - self.assertEqual(_pad(*data_y), ax0.get_ylim()) - - self.mgr.remove_series(data_uid) - self.assertEqual((-1.0, 1.0), ax0.get_ylim()) - - # Test reset_view with no lines plotted - self.mgr.reset_view() From 3798a83094f94eb46e27f6bff181ec3d3d5585d8 Mon Sep 17 00:00:00 2001 From: Zachery Brady Date: Mon, 18 Jun 2018 15:46:32 -0600 Subject: [PATCH 105/236] ENH: Add properties to Flight class for data access. Make data access (Trajectory/Gravity) less frustrating by providing direct property accessors in the Flight class. --- dgp/gui/ui/transform_tab_widget.ui | 2 +- dgp/gui/workspaces/TransformTab.py | 20 ++++++++++---------- dgp/lib/project.py | 14 ++++++++++++++ tests/test_dialogs.py | 2 +- 4 files changed, 26 insertions(+), 12 deletions(-) diff --git a/dgp/gui/ui/transform_tab_widget.ui b/dgp/gui/ui/transform_tab_widget.ui index 5f9717e..dfa7b27 100644 --- a/dgp/gui/ui/transform_tab_widget.ui +++ b/dgp/gui/ui/transform_tab_widget.ui @@ -46,7 +46,7 @@ - + diff --git a/dgp/gui/workspaces/TransformTab.py b/dgp/gui/workspaces/TransformTab.py index 4263b84..c46fa74 100644 --- a/dgp/gui/workspaces/TransformTab.py +++ b/dgp/gui/workspaces/TransformTab.py @@ -5,18 +5,16 @@ import pandas as pd import numpy as np -from pyqtgraph import PlotWidget from dgp.lib.types import DataSource from dgp.lib.transform.transform_graphs import SyncGravity, AirbornePost, TransformGraph -from dgp.lib.enums import DataTypes from dgp.gui.plotting.plotters import TransformPlot from . import BaseTab, Flight from ..ui.transform_tab_widget import Ui_TransformInterface class TransformWidget(QWidget, Ui_TransformInterface): - def __init__(self, flight): + def __init__(self, flight: Flight): super().__init__() self.setupUi(self) @@ -24,10 +22,12 @@ def __init__(self, flight): self._plot = TransformPlot() self.hlayout.addWidget(self._plot.widget, Qt.AlignLeft | Qt.AlignTop) - self.transform.addItems(['Sync Gravity', 'Airborne Post']) + self.cb_line_select.addItem('All') + self.cb_line_select.addItems([str(line.start) for line in flight.lines]) + self.transform.addItems(['Airborne Post']) - self._trajectory = self._flight.get_source(DataTypes.TRAJECTORY) - self._gravity = self._flight.get_source(DataTypes.GRAVITY) + self._trajectory = self._flight.trajectory + self._gravity = self._flight.gravity self.bt_execute_transform.clicked.connect(self.execute_transform) @@ -50,14 +50,14 @@ def execute_transform(self): print("Running sync grav transform") elif c_transform == 'airborne post': print("Running airborne post transform") - trajectory = self._trajectory.load() - graph = AirbornePost(trajectory, self._gravity.load(), 0, 0) + graph = AirbornePost(self._trajectory, self._gravity, 0, 0) print("Executing graph") results = graph.execute() print(results.keys()) - time = pd.Series(trajectory.index.astype(np.int64) / 10 ** 9, index=trajectory.index, name='unix_time') - output_frame = pd.concat([time, trajectory[['lat', 'long', 'ell_ht']], + time = pd.Series(self._trajectory.index.astype(np.int64) / 10 ** 9, index=self._trajectory.index, + name='unix_time') + output_frame = pd.concat([time, self._trajectory[['lat', 'long', 'ell_ht']], results['aligned_eotvos'], results['aligned_kin_accel'], results['lat_corr'], results['fac'], results['total_corr'], diff --git a/dgp/lib/project.py b/dgp/lib/project.py index f633741..9f2474a 100644 --- a/dgp/lib/project.py +++ b/dgp/lib/project.py @@ -336,6 +336,20 @@ def data(self, role): return "{name} - {date}".format(name=self.name, date=self.date) return super().data(role) + @property + def gravity(self): + try: + return self.get_source(DataTypes.GRAVITY).load() + except AttributeError: + return None + + @property + def trajectory(self): + try: + return self.get_source(DataTypes.TRAJECTORY).load() + except AttributeError: + return None + @property def lines(self): for line in sorted(self.get_child(self._lines_uid), diff --git a/tests/test_dialogs.py b/tests/test_dialogs.py index 6b0f4ee..2ad84b1 100644 --- a/tests/test_dialogs.py +++ b/tests/test_dialogs.py @@ -29,7 +29,7 @@ def setUp(self): def test_properties_dialog(self): t_dlg = dlg.PropertiesDialog(self.m_flight) - self.assertEqual(6, t_dlg.form.rowCount()) + self.assertEqual(8, t_dlg.form.rowCount()) spy = QtTest.QSignalSpy(t_dlg.accepted) self.assertTrue(spy.isValid()) QTest.mouseClick(t_dlg._btns.button(QtWidgets.QDialogButtonBox.Ok), From a2653279a8f6487387abb4539bc38f05c4cb0963 Mon Sep 17 00:00:00 2001 From: Zachery Brady Date: Wed, 20 Jun 2018 08:43:36 -0600 Subject: [PATCH 106/236] Rework of HDF5 data management interface. Datamanager renamed to datastore, code simplified to remove dependence on an external JSON 'registry'. Internal structure of HDF5 files re-worked. Data will now be written to groups based on flight-id/data-type/data-uid. Ability to add arbitrary Metadata attributes to HDF5 leafs has been added through pytables API. TODO: Optimize attribute read/write when more than one attribute is read/written. --- dgp/gui/main.py | 19 ++- dgp/lib/datamanager.py | 273 -------------------------------------- dgp/lib/datastore.py | 248 ++++++++++++++++++++++++++++++++++ dgp/lib/project.py | 2 +- dgp/lib/types.py | 8 +- tests/test_datamanager.py | 55 -------- tests/test_datastore.py | 67 ++++++++++ 7 files changed, 331 insertions(+), 341 deletions(-) delete mode 100644 dgp/lib/datamanager.py create mode 100644 dgp/lib/datastore.py delete mode 100644 tests/test_datamanager.py create mode 100644 tests/test_datastore.py diff --git a/dgp/gui/main.py b/dgp/gui/main.py index dc31bea..a92e917 100644 --- a/dgp/gui/main.py +++ b/dgp/gui/main.py @@ -15,7 +15,7 @@ import dgp.lib.types as types import dgp.lib.enums as enums import dgp.gui.loader as loader -import dgp.lib.datamanager as dm +import dgp.lib.datastore as dm from dgp.gui.utils import (ConsoleHandler, LOG_FORMAT, LOG_LEVEL_MAP, LOG_COLOR_MAP, get_project_file) from dgp.gui.dialogs import (AddFlightDialog, CreateProjectDialog, @@ -273,8 +273,8 @@ def show_progress_status(self, start, stop, label=None) -> QtWidgets.QProgressBa sb.addWidget(progress) return progress - def _add_data(self, data, dtype, flight, path): - uid = dm.get_manager().save_data(dm.HDF5, data) + def _add_data(self, data, dtype: enums.DataTypes, flight: prj.Flight, path): + uid = dm.get_datastore().save_data(data, flight.uid, dtype.value) if uid is None: self.log.error("Error occured writing DataFrame to HDF5 store.") return @@ -317,21 +317,20 @@ def load_file(self, dtype, flight, **params): prog = self.show_progress_status(0, 0) prog.setValue(1) - def _complete(data): + def _on_complete(data): self.add_data(data, dtype, flight, params.get('path', None)) # align and crop gravity and trajectory frames if both are present - if flight.has_trajectory and flight.has_gravity: - # get datasource objects - gravity = flight.get_source(enums.DataTypes.GRAVITY) - trajectory = flight.get_source(enums.DataTypes.TRAJECTORY) - + gravity = flight.get_source(enums.DataTypes.GRAVITY) + trajectory = flight.get_source(enums.DataTypes.TRAJECTORY) + if gravity is not None and trajectory is not None: # align and crop the gravity and trajectory frames fields = DGS_AT1A_INTERP_FIELDS | TRAJECTORY_INTERP_FIELDS new_gravity, new_trajectory = align_frames(gravity.load(), trajectory.load(), interp_only=fields) + # TODO: Fix this mess # replace datasource objects ds_attr = {'path': gravity.filename, 'dtype': gravity.dtype} flight.remove_data(gravity) @@ -356,7 +355,7 @@ def _result(result): typ=dtype.name.capitalize(), fname=params.get('path', '')) self.log.info(msg) - ld = loader.get_loader(parent=self, dtype=dtype, on_complete=_complete, + ld = loader.get_loader(parent=self, dtype=dtype, on_complete=_on_complete, on_error=_result, **params) ld.start() diff --git a/dgp/lib/datamanager.py b/dgp/lib/datamanager.py deleted file mode 100644 index 5bb4d21..0000000 --- a/dgp/lib/datamanager.py +++ /dev/null @@ -1,273 +0,0 @@ -# coding: utf-8 - -import logging -import json -from pathlib import Path -from typing import Union - -from pandas import HDFStore, DataFrame - -from dgp.lib.etc import gen_uuid - -""" -Dynamic Gravity Processor (DGP) :: lib/datamanager.py -License: Apache License V2 - -Work in Progress -Should be initialized from Project Object, to pass project base dir. - -Requirements: -1. Store a DataFrame on the file system. -2. Retrieve a DataFrame from the file system. -2a. Store/retrieve metadata on other data objects. -2b. Cache any loaded data for the current session (up to a limit? e.g. LRU) -3. Store an arbitrary dictionary. -4. Track original file location of any imported files. - -What resource silos could we have? -HDF5 -CSV/File -Serialized/Pickled objects -JSON -Backup files/archives (.zip/.tgz) - -""" - -__all__ = ['init', 'get_manager', 'HDF5', 'JSON', 'CSV'] - -REGISTRY_NAME = 'dmreg.json' - -# Define Data Types -HDF5 = 'hdf5' -JSON = 'json' -CSV = 'csv' - -_manager = None - - -class _Registry: - """ - A JSON utility class that allows us to read/write from the JSON file - with a context manager. The context manager handles automatic saving and - loading of the JSON registry file. - """ - __emtpy = { - 'version': 1, - 'datamap': {} # data_uid -> data_type - } - - def __init__(self, path: Path): - self.__base_path = Path(path) - self.__path = self.__base_path.joinpath(REGISTRY_NAME) - self.__registry = None - - def __load(self) -> None: - """Load the registry from __path, create and dump if it doesn't exist""" - try: - with self.__path.open('r') as fd: - self.__registry = json.load(fd) - except FileNotFoundError: - self.__registry = self.__emtpy.copy() - self.__save() - - def __save(self) -> None: - """Save __registry to __path as JSON""" - with self.__path.open('w') as fd: - json.dump(self.__registry, fd, indent=4) - - def get_hdfpath(self, touch=True) -> Path: - """ - Return the stored HDF5 file path, or create a new one if it - doesn't exist. - - Notes - ----- - The newly generated hdf file name will be created if touch=True, - else the file path must be written to in order to create it. - """ - if HDF5 in self.registry: - return self.__base_path.joinpath(self.registry[HDF5]) - - # Create the HDF5 path if it doesnt exist - with self as reg: - fname = gen_uuid('repo_') + '.hdf5' - reg.setdefault(HDF5, fname) - path = self.__base_path.joinpath(fname) - if touch: - path.touch() - return path - - def get_type(self, uid) -> Path: - """Return the data type of data represented by UID""" - return self.registry['datamap'][uid] - - @property - def registry(self) -> dict: - """Return internal registry, loading it from file if None""" - if self.__registry is None: - self.__load() - return self.__registry - - def __getitem__(self, item) -> dict: - return self.registry[item] - - def __enter__(self) -> dict: - """Context manager entry point, return reference to registry dict""" - return self.registry - - def __exit__(self, exc_type, exc_val, exc_tb) -> None: - """Context manager exit, save/dump any changes to registry to file""" - self.__save() - - -class _DataManager: - """ - Do not instantiate this class directly. Call the module init() method - DataManager is designed to be a singleton class that is initialized and - stored within the module level var 'manager', other modules can then - request a reference to the instance via get_manager() and use the class - to load and save data. - This is similar in concept to the Python Logging - module, where the user can call logging.getLogger() to retrieve a global - root logger object. - The DataManager will be responsible for most if not all data IO, - providing a centralized interface to store, retrieve, and export data. - To track the various data files that the DataManager manages, a JSON - registry is maintained within the project/data directory. This JSON - registry is updated and queried for relative file paths, and may also be - used to store mappings of uid -> file for individual blocks of data. - """ - _registry = None - - def __new__(cls, *args, **kwargs): - """The utility of this is questionable. Idea is to ensure this class - is a singleton""" - global _manager - if _manager is not None: - return _manager - _manager = super().__new__(cls) - return _manager - - def __init__(self, root_path): - self.log = logging.getLogger(__name__) - self.dir = Path(root_path) - if not self.dir.exists(): - self.dir.mkdir(parents=True) - - # Initialize the JSON Registry - self._registry = _Registry(self.dir) - self._cache = {} - self.init = True - self.log.debug("DataManager initialized.") - - def save_data(self, dtype, data) -> str: - """ - Save data to a repository for dtype information. - Data is added to the local cache, keyed by its generated UID. - The generated UID is passed back to the caller for later reference. - This function serves as a dispatch mechanism for different data types. - e.g. To dump a pandas DataFrame into an HDF5 store: - >>> df = DataFrame() - >>> uid = get_manager().save_data(HDF5, df) - The DataFrame can later be loaded by calling load_data, e.g. - >>> df = get_manager().load_data(uid) - - Parameters - ---------- - dtype: str - Data type, determines how/where data is saved. - Options: HDF5, JSON, CSV - data: Union[DataFrame, Series, dict, list, str] - Data object to be stored on disk via specified format. - - Returns - ------- - str: - Generated UID assigned to data object saved. - """ - if dtype == HDF5: - uid = self._save_hdf5(data) - self._cache[uid] = data - return uid - - def _save_hdf5(self, data, uid=None): - """ - Saves data to the managed HDF5 repository. - Parameters - ---------- - data: Union[DataFrame, Series] - uid: str - Optional UID to assign to the data - if None specified a new UID - will be generated. - - Returns - ------- - str: - Returns the UID of the data saved to the HDF5 repo. - """ - hdf_path = self._registry.get_hdfpath() - if uid is None: - uid = gen_uuid('data_') - with HDFStore(str(hdf_path)) as hdf, self._registry as reg: - print("Writing to hdfstore: ", hdf_path) - try: - hdf.put(uid, data, format='fixed', data_columns=True) - except: - self.log.exception("Exception writing file to HDF5 store.") - return None - reg['datamap'].update({uid: HDF5}) - return uid - - def load_data(self, uid): - """ - Load data from a managed repository by UID - This public method is a dispatch mechanism that calls the relevant - loader based on the data type of the data represented by UID. - This method will first check the local cache for UID, and if the key - is not located, will attempt to load it from its location stored in - the registry. - Parameters - ---------- - uid: str - UID of stored date to retrieve. - - Returns - ------- - Union[DataFrame, Series, dict] - Data retrieved from store. - """ - if uid in self._cache: - self.log.info("Loading data {} from cache.".format(uid)) - return self._cache[uid] - - dtype = self._registry.get_type(uid) - if dtype == HDF5: - data = self._load_hdf5(uid) - self._cache[uid] = data - return data - - def _load_hdf5(self, uid): - self.log.warning("Loading HDF5 data from on-disk storage.") - hdf_path = self._registry.get_hdfpath() - with HDFStore(str(hdf_path)) as hdf: - data = hdf.get(uid) - return data - - -def init(path: Path): - """ - Initialize the DataManager with specified base path. All data and - metadata will be stored within this path. - """ - global _manager - if _manager is not None and _manager.init: - return False - _manager = _DataManager(path) - return True - - -def get_manager() -> Union[_DataManager, None]: - if _manager is not None: - return _manager - raise ValueError("DataManager has not been initialized. Call " - "datamanager.init(path)") diff --git a/dgp/lib/datastore.py b/dgp/lib/datastore.py new file mode 100644 index 0000000..5468aaf --- /dev/null +++ b/dgp/lib/datastore.py @@ -0,0 +1,248 @@ +# coding: utf-8 + +import logging +import json +from pathlib import Path +from typing import Union + +import tables +import tables.exceptions +from tables.attributeset import AttributeSet +from pandas import HDFStore, DataFrame + +from dgp.lib.etc import gen_uuid + +""" +Dynamic Gravity Processor (DGP) :: lib/datastore.py +License: Apache License V2 + +Work in Progress +Should be initialized from Project Object, to pass project base dir. + +Requirements: +1. Store a DataFrame on the file system. +2. Retrieve a DataFrame from the file system. +2a. Store/retrieve metadata on other data objects. +2b. Cache any loaded data for the current session (up to a limit? e.g. LRU) +3. Store an arbitrary dictionary. +4. Track original file location of any imported files. + +TODO: Re-focus the idea of this module. +Our PRIMARY goal is to provide a global interface to save/load data (and related meta-data) +from an HDF5 data file. +Other data storage types are not of concern at the moment (e.g. Exporting to CSV, JSON) +- those should be the purview of another specialized module (e.g. exports) + + +METADATA: + +Might be able to use hf.get_node('path') then node._f_setattr('key', 'value') / node._f_getattr('attr') +for metadata storage + +""" + +__all__ = ['init', 'get_datastore', 'HDF5'] + +# Define Data Types +HDF5 = 'hdf5' +HDF5_NAME = 'dgpdata.hdf5' + +_manager = None + + +class _DataStore: + """ + Do not instantiate this class directly. Call the module init() method + DataManager is designed to be a singleton class that is initialized and + stored within the module level var 'manager', other modules can then + request a reference to the instance via get_manager() and use the class + to load and save data. + This is similar in concept to the Python Logging + module, where the user can call logging.getLogger() to retrieve a global + root logger object. + The DataManager will be responsible for most if not all data IO, + providing a centralized interface to store, retrieve, and export data. + To track the various data files that the DataManager manages, a JSON + registry is maintained within the project/data directory. This JSON + registry is updated and queried for relative file paths, and may also be + used to store mappings of uid -> file for individual blocks of data. + """ + _registry = None + _init = False + + def __new__(cls, *args, **kwargs): + global _manager + if _manager is not None and isinstance(_manager, _DataStore): + return _manager + _manager = super().__new__(cls) + return _manager + + def __init__(self, root_path): + self.log = logging.getLogger(__name__) + self.dir = Path(root_path) + if not self.dir.exists(): + self.dir.mkdir(parents=True) + # TODO: Consider searching by extension (.hdf5 .h5) for hdf5 datafile + self._path = self.dir.joinpath(HDF5_NAME) + + self._cache = {} + self._init = True + self.log.debug("DataStore initialized.") + + @property + def initialized(self): + return self._init + + @property + def hdf5path(self): + return str(self._path) + + @hdf5path.setter + def hdf5path(self, value): + value = Path(value) + if not value.exists(): + raise FileNotFoundError + else: + self._path = value + + @staticmethod + def _get_path(flightid, grpid, uid): + return '/'.join(map(str, ['', flightid, grpid, uid])) + + def save_data(self, data, flightid, grpid, uid=None, **kwargs) -> Union[str, None]: + """ + Save a Pandas Series or DataFrame to the HDF5 Store + Data is added to the local cache, keyed by its generated UID. + The generated UID is passed back to the caller for later reference. + This function serves as a dispatch mechanism for different data types. + e.g. To dump a pandas DataFrame into an HDF5 store: + >>> df = DataFrame() + >>> uid = get_datastore().save_data(df) + The DataFrame can later be loaded by calling load_data, e.g. + >>> df = get_datastore().load_data(uid) + + Parameters + ---------- + data: Union[DataFrame, Series] + Data object to be stored on disk via specified format. + flightid: String + grpid: String + Data group (Gravity/Trajectory etc) + uid: String + kwargs: + Optional Metadata attributes to attach to the data node + + Returns + ------- + str: + Generated UID assigned to data object saved. + """ + + self._cache[uid] = data + if uid is None: + uid = gen_uuid('hdf5_') + + # Generate path as /{flight_uid}/{grp_id}/uid + path = self._get_path(flightid, grpid, uid) + + with HDFStore(self.hdf5path) as hdf: + try: + hdf.put(path, data, format='fixed', data_columns=True) + except: + self.log.exception("Exception writing file to HDF5 store.") + return None + else: + self.log.info("Wrote file to HDF5 store at node: %s", path) + # TODO: Figure out how to embed meta-data in the HDF5 store + # It's possible with the underlying PyTables interface, but need to investigate if possible with pandas + # HDFStore interface + + return uid + + def load_data(self, flightid, grpid, uid): + """ + Load data from a managed repository by UID + This public method is a dispatch mechanism that calls the relevant + loader based on the data type of the data represented by UID. + This method will first check the local cache for UID, and if the key + is not located, will load it from the HDF5 Data File. + + Parameters + ---------- + flightid: String + grpid: String + uid: String + UID of stored date to retrieve. + + Returns + ------- + Union[DataFrame, Series, dict] + Data retrieved from store. + + Raises + ------ + KeyError + If data key (/flightid/grpid/uid) does not exist + """ + + if uid in self._cache: + self.log.info("Loading data {} from cache.".format(uid)) + return self._cache[uid] + else: + path = self._get_path(flightid, grpid, uid) + self.log.debug("Loading data %s from hdf5 store.", path) + + with HDFStore(self.hdf5path) as hdf: + data = hdf.get(path) + + # Cache the data + self._cache[uid] = data + return data + + # See https://www.pytables.org/usersguide/libref/file_class.html#tables.File.set_node_attr + # For more details on setting/retrieving metadata from hdf5 file using pytables + # Note that the _v_ and _f_ prefixes are meant for instance variables and public methods + # within pytables - so the inspection warning can be safely ignored + + def get_node_attrs(self, path) -> list: + with tables.open_file(self.hdf5path) as hdf: + try: + return hdf.get_node(path)._v_attrs._v_attrnames + except tables.exceptions.NoSuchNodeError: + raise ValueError("Specified path %s does not exist.", path) + + def _get_node_attr(self, path, attrname): + with tables.open_file(self.hdf5path) as hdf: + try: + return hdf.get_node_attr(path, attrname) + except AttributeError: + return None + + def _set_node_attr(self, path, attrname, value): + with tables.open_file(self.hdf5path, 'a') as hdf: + try: + hdf.set_node_attr(path, attrname, value) + except tables.exceptions.NoSuchNodeError: + self.log.error("Unable to set attribute on path: %s key does not exist.") + raise KeyError("Node %s does not exist", path) + else: + return True + + +def init(path: Path): + """ + Initialize the DataManager with specified base path. All data and + metadata will be stored within this path. + """ + global _manager + if _manager is not None and _manager.initialized: + return False + _manager = _DataStore(path) + return True + + +def get_datastore() -> Union[_DataStore, None]: + if _manager is not None: + return _manager + raise ValueError("DataManager has not been initialized. Call " + "datamanager.init(path)") diff --git a/dgp/lib/project.py b/dgp/lib/project.py index 9f2474a..d47e239 100644 --- a/dgp/lib/project.py +++ b/dgp/lib/project.py @@ -13,7 +13,7 @@ from .etc import gen_uuid from .types import DataSource, FlightLine, TreeItem from .enums import DataTypes -from . import datamanager as dm +from . import datastore as dm from .enums import DataTypes """ diff --git a/dgp/lib/types.py b/dgp/lib/types.py index bb36dcf..179ac29 100644 --- a/dgp/lib/types.py +++ b/dgp/lib/types.py @@ -9,7 +9,7 @@ from dgp.lib.etc import gen_uuid from dgp.gui.qtenum import QtItemFlags, QtDataRoles -from .datamanager import get_manager +from .datastore import get_datastore # import dgp.lib.datamanager as dm from . import enums # import dgp.lib.enums as enums @@ -535,7 +535,11 @@ def get_channels(self) -> List['DataChannel']: def load(self, field=None) -> Union[Series, DataFrame]: """Load data from the DataManager and return the specified field.""" - data = get_manager().load_data(self.uid) + try: + data = get_datastore().load_data(self._flight.uid, self.dtype.value, self.uid) + except KeyError: + _log.exception("Unable to load data.") + return None if field is not None: return data[field] return data diff --git a/tests/test_datamanager.py b/tests/test_datamanager.py deleted file mode 100644 index 510a0af..0000000 --- a/tests/test_datamanager.py +++ /dev/null @@ -1,55 +0,0 @@ -# coding: utf-8 - -import unittest -import tempfile -import uuid -import json -from pathlib import Path - -from pandas import DataFrame - -from .context import dgp -import dgp.lib.datamanager as dm - - -class TestDataManager(unittest.TestCase): - - def setUp(self): - data = {'Col1': ['c1-1', 'c1-2', 'c1-3'], 'Col2': ['c2-1', 'c2-2', - 'c2-3']} - self.test_frame = DataFrame.from_dict(data) - - def tearDown(self): - pass - - def test_dm_init(self): - td = Path(tempfile.gettempdir()).joinpath(str(uuid.uuid4())) - with self.assertRaises(ValueError): - mgr = dm.get_manager() - - dm.init(td) - self.assertTrue(td.exists()) - - mgr = dm.get_manager() - self.assertEqual(mgr.dir, td) - self.assertIsInstance(mgr, dm._DataManager) - - def test_dm_save_hdf(self): - mgr = dm.get_manager() - self.assertTrue(mgr.init) - - res = mgr.save_data('hdf5', self.test_frame) - loaded = mgr.load_data(res) - self.assertTrue(self.test_frame.equals(loaded)) - # print(mgr._registry) - - @unittest.skip - def test_dm_double_init(self): - td2 = Path(tempfile.gettempdir()).joinpath(str(uuid.uuid4())) - dm2 = dm._DataManager(td2) - - def test_registry(self): - reg_tmp = Path(tempfile.gettempdir()).joinpath(str(uuid.uuid4())) - reg_tmp.mkdir(parents=True) - reg = dm._Registry(reg_tmp) - # print(reg.registry) diff --git a/tests/test_datastore.py b/tests/test_datastore.py new file mode 100644 index 0000000..06d18f6 --- /dev/null +++ b/tests/test_datastore.py @@ -0,0 +1,67 @@ +# -*- coding: utf-8 -*- + +import tempfile +import uuid +from pathlib import Path + +import pytest +from pandas import DataFrame + +# from .context import dgp +import dgp.lib.datastore as ds + + +class TestDataManager: + + @pytest.fixture(scope='session') + def temp_dir(self): + return Path(tempfile.gettempdir()).joinpath(str(uuid.uuid4())) + + @pytest.fixture(scope='session') + def store(self, temp_dir) -> ds._DataStore: + ds.init(temp_dir) + return ds.get_datastore() + + @pytest.fixture + def test_df(self): + data = {'Col1': ['c1-1', 'c1-2', 'c1-3'], 'Col2': ['c2-1', 'c2-2', + 'c2-3']} + return DataFrame.from_dict(data) + + def test_datastore_init(self, store, temp_dir): + store = ds.get_datastore() + assert isinstance(store, ds._DataStore) + assert store.dir == temp_dir + assert store._path == temp_dir.joinpath(ds.HDF5_NAME) + + def test_datastore_save(self, store, test_df): + assert store.initialized + + fltid = uuid.uuid4() + + res = store.save_data(test_df, fltid, 'gravity') + loaded = store.load_data(fltid, 'gravity', res) + assert test_df.equals(loaded) + + def test_ds_metadata(self, store: ds._DataStore, test_df): + fltid = uuid.uuid4() + grpid = 'gravity' + uid = uuid.uuid4() + + node_path = store._get_path(fltid, grpid, uid) + store.save_data(test_df, fltid, grpid, uid) + + attr_key = 'test_attr' + attr_value = {'a': 'complex', 'v': 'value'} + + # Assert True result first + assert store._set_node_attr(node_path, attr_key, attr_value) + # Validate value was stored, and can be retrieved + result = store._get_node_attr(node_path, attr_key) + assert attr_value == result + + # Test retrieval of keys for a specified node + assert attr_key in store.get_node_attrs(node_path) + + with pytest.raises(KeyError): + store._set_node_attr('/invalid/node/path', attr_key, attr_value) From 850121fe64c4df21b9eaf65faf9a5d52d19d61d5 Mon Sep 17 00:00:00 2001 From: Zachery Brady Date: Wed, 20 Jun 2018 11:50:56 -0600 Subject: [PATCH 107/236] Update Transform UI and add functionality. Enable channel selection for single plot. Dynamically update combo-boxes for flight selection. Add basic logging. --- dgp/gui/ui/transform_tab_widget.ui | 99 +++++++++++++++++-- dgp/gui/workspaces/TransformTab.py | 148 +++++++++++++++++++++-------- 2 files changed, 202 insertions(+), 45 deletions(-) diff --git a/dgp/gui/ui/transform_tab_widget.ui b/dgp/gui/ui/transform_tab_widget.ui index dfa7b27..280f628 100644 --- a/dgp/gui/ui/transform_tab_widget.ui +++ b/dgp/gui/ui/transform_tab_widget.ui @@ -46,10 +46,56 @@ - - - - + + + + + Flight Line: + + + + + + + + + + + + Refresh + + + ... + + + + :/images/geoid:/images/geoid + + + + + + + + + Index: + + + + + + + + + + Transform: + + + + + + + @@ -58,17 +104,56 @@ + + + + false + + + Export + + + - + - Properties + Channels + + + + + QAbstractItemView::NoEditTriggers + + + + + + + + + Select All + + + + + + + Deselect All + + + + + + - + + + diff --git a/dgp/gui/workspaces/TransformTab.py b/dgp/gui/workspaces/TransformTab.py index c46fa74..235a97d 100644 --- a/dgp/gui/workspaces/TransformTab.py +++ b/dgp/gui/workspaces/TransformTab.py @@ -1,12 +1,15 @@ # -*- coding: utf-8 -*- +import logging + from PyQt5.QtCore import Qt +from PyQt5.QtGui import QStandardItemModel, QStandardItem from PyQt5.QtWidgets import QVBoxLayout, QWidget, QComboBox import pandas as pd import numpy as np -from dgp.lib.types import DataSource +from dgp.lib.types import DataSource, QtDataRoles from dgp.lib.transform.transform_graphs import SyncGravity, AirbornePost, TransformGraph from dgp.gui.plotting.plotters import TransformPlot from . import BaseTab, Flight @@ -17,62 +20,131 @@ class TransformWidget(QWidget, Ui_TransformInterface): def __init__(self, flight: Flight): super().__init__() self.setupUi(self) - + self.log = logging.getLogger(__name__) self._flight = flight - self._plot = TransformPlot() - self.hlayout.addWidget(self._plot.widget, Qt.AlignLeft | Qt.AlignTop) + self._plot = TransformPlot(rows=1) + self._current_dataset = None + + # Initialize Models for ComboBoxes + self.flight_lines = QStandardItemModel() + self.plot_index = QStandardItemModel() + self.transform_graphs = QStandardItemModel() + # Set ComboBox Models + self.cb_flight_lines.setModel(self.flight_lines) + self.cb_plot_index.setModel(self.plot_index) + self.cb_plot_index.currentIndexChanged[int].connect(lambda idx: print("Index changed to %d" % idx)) + + self.cb_transform_graphs.setModel(self.transform_graphs) + + # Initialize model for channels + self.channels = QStandardItemModel() + self.channels.itemChanged.connect(self._update_channel_selection) + self.lv_channels.setModel(self.channels) - self.cb_line_select.addItem('All') - self.cb_line_select.addItems([str(line.start) for line in flight.lines]) - self.transform.addItems(['Airborne Post']) + # Populate ComboBox Models + self._set_flight_lines() + + for choice in ['Time', 'Latitude', 'Longitude']: + item = QStandardItem(choice) + item.setData(0, QtDataRoles.UserRole) + self.plot_index.appendRow(item) + + self.cb_plot_index.setCurrentIndex(0) + + for choice, method in [('Airborne Post', AirbornePost)]: + item = QStandardItem(choice) + item.setData(method, QtDataRoles.UserRole) + self.transform_graphs.appendRow(item) self._trajectory = self._flight.trajectory self._gravity = self._flight.gravity self.bt_execute_transform.clicked.connect(self.execute_transform) + self.bt_line_refresh.clicked.connect(self._set_flight_lines) + self.bt_select_all.clicked.connect(lambda: self._set_all_channels(Qt.Checked)) + self.bt_select_none.clicked.connect(lambda: self._set_all_channels(Qt.Unchecked)) + + self.hlayout.addWidget(self._plot.widget, Qt.AlignLeft | Qt.AlignTop) @property def transform(self) -> QComboBox: return self.cb_transform_select @property - def plot(self): + def plot(self) -> TransformPlot: return self._plot + def _set_flight_lines(self): + self.flight_lines.clear() + line_all = QStandardItem("All") + line_all.setData('all', role=QtDataRoles.UserRole) + self.flight_lines.appendRow(line_all) + for line in self._flight.lines: + item = QStandardItem(str(line)) + item.setData(line, QtDataRoles.UserRole) + self.flight_lines.appendRow(item) + + def _set_all_channels(self, state=Qt.Checked): + for i in range(self.channels.rowCount()): + self.channels.item(i).setCheckState(state) + + def _update_channel_selection(self, item: QStandardItem): + data = item.data(QtDataRoles.UserRole) + if item.checkState() == Qt.Checked: + self.plot.add_series(data) + else: + self.plot.remove_series(data) + + def _view_transform_graph(self): + """Print out the dictionary transform (or even the raw code) in GUI?""" + pass + + def _prepare_transform(self, transform: TransformGraph): + + pass + + def _concat_results(self, results: dict): + # TODO: How to generalize this for any TransformGraph + print(results.keys()) + trajectory = results['trajectory'] + time_index = pd.Series(trajectory.index.astype(np.int64) / 10 ** 9, index=trajectory.index, + name='unix_time') + output_frame = pd.concat([time_index, trajectory[['lat', 'long', 'ell_ht']], + results['aligned_eotvos'], + results['aligned_kin_accel'], results['lat_corr'], + results['fac'], results['total_corr'], + results['abs_grav'], results['corrected_grav']], + axis=1) + output_frame.columns = ['unix_time', 'lat', 'lon', 'ell_ht', 'eotvos', + 'kin_accel', 'lat_corr', 'fac', 'total_corr', + 'vert_accel', 'gravity'] + return output_frame + def execute_transform(self): if self._trajectory is None or self._gravity is None: - print("Missing trajectory or gravity") + self.log.warning("Missing trajectory or gravity") return - print("Executing transform") - c_transform = self.transform.currentText().lower() - if c_transform == 'sync gravity': - print("Running sync grav transform") - elif c_transform == 'airborne post': - print("Running airborne post transform") - graph = AirbornePost(self._trajectory, self._gravity, 0, 0) - print("Executing graph") - results = graph.execute() - print(results.keys()) - - time = pd.Series(self._trajectory.index.astype(np.int64) / 10 ** 9, index=self._trajectory.index, - name='unix_time') - output_frame = pd.concat([time, self._trajectory[['lat', 'long', 'ell_ht']], - results['aligned_eotvos'], - results['aligned_kin_accel'], results['lat_corr'], - results['fac'], results['total_corr'], - results['abs_grav'], results['corrected_grav']], - axis=1) - output_frame.columns = ['unix_time', 'lat', 'lon', 'ell_ht', 'eotvos', - 'kin_accel', 'lat_corr', 'fac', 'total_corr', - 'vert_accel', 'gravity'] - - print(output_frame.describe()) - # self.plot.add_series(output_frame['eotvos']) - # self.plot.add_series(output_frame['gravity']) - # self.plot.add_series(output_frame['fac']) - self.plot.add_series(output_frame['vert_accel']) - # self.plot.add_series(output_frame['total_corr']) + self.log.info("Preparing Transformation Graph") + transform = self.cb_transform_graphs.currentData(QtDataRoles.UserRole) + + graph = transform(self._trajectory, self._gravity, 0, 0) + self.log.info("Executing graph") + results = graph.execute() + result_df = self._concat_results(results) + + default_channels = ['gravity'] + self.channels.clear() + for col in result_df.columns: + item = QStandardItem(col) + item.setCheckable(True) + item.setData(result_df[col], QtDataRoles.UserRole) + self.channels.appendRow(item) + if col in default_channels: + item.setCheckState(Qt.Checked) + + # lat_idx = result_df.set_index('lat') + # lon_idx = result_df.set_index('lon') class TransformTab(BaseTab): From e155a3ac171490a7fa1a121f8a44d3a6fb7bbeb8 Mon Sep 17 00:00:00 2001 From: Zachery Brady Date: Wed, 20 Jun 2018 11:53:38 -0600 Subject: [PATCH 108/236] Refactor ChannelListModel, remove deprecated plot code. --- dgp/gui/models.py | 6 ++-- dgp/gui/plotting/backends.py | 31 ++++---------------- dgp/gui/plotting/plotters.py | 23 ++++++++------- dgp/gui/workspaces/PlotTab.py | 5 ++-- dgp/gui/workspaces/TransformTab.py | 42 +++++++++------------------ dgp/lib/enums.py | 4 +-- dgp/lib/etc.py | 2 +- dgp/lib/transform/transform_graphs.py | 29 ++++++++++++++++-- tests/context.py | 4 ++- tests/test_transform.py | 9 ++++-- 10 files changed, 77 insertions(+), 78 deletions(-) diff --git a/dgp/gui/models.py b/dgp/gui/models.py index 506a942..b31f011 100644 --- a/dgp/gui/models.py +++ b/dgp/gui/models.py @@ -1,11 +1,11 @@ -# coding: utf-8 +# -*- coding: utf-8 -*- import logging from typing import List, Dict import PyQt5.QtCore as QtCore import PyQt5.Qt as Qt -from PyQt5.Qt import QWidget +from PyQt5.QtWidgets import QWidget from PyQt5.QtCore import (QModelIndex, QVariant, QAbstractItemModel, QMimeData, pyqtSignal, pyqtBoundSignal) from PyQt5.QtGui import QIcon, QBrush, QColor @@ -382,7 +382,7 @@ def updateEditorGeometry(self, editor: QWidget, editor.setGeometry(option.rect) -class ChannelListModel(BaseTreeModel): +class ChannelListTreeModel(BaseTreeModel): """ Tree type model for displaying/plotting data channels. This model supports drag and drop internally. diff --git a/dgp/gui/plotting/backends.py b/dgp/gui/plotting/backends.py index 8f85e23..90e484d 100644 --- a/dgp/gui/plotting/backends.py +++ b/dgp/gui/plotting/backends.py @@ -20,9 +20,6 @@ from pyqtgraph.graphicsItems.GraphicsLayout import GraphicsLayout from pyqtgraph.graphicsItems.AxisItem import AxisItem from pyqtgraph.graphicsItems.PlotDataItem import PlotDataItem -from pyqtgraph.graphicsItems.InfiniteLine import InfiniteLine -from pyqtgraph.graphicsItems.ViewBox import ViewBox -from pyqtgraph.graphicsItems.LinearRegionItem import LinearRegionItem from pyqtgraph.widgets.PlotWidget import PlotWidget, PlotItem from pyqtgraph import SignalProxy @@ -43,25 +40,8 @@ interface for plotting. However, the Stacked*Widget classes might nicely encapsulate what was intended there. """ -__all__ = ['PYQTGRAPH', 'MATPLOTLIB', 'BasePlot', 'StackedMPLWidget', - 'PyQtGridPlotWidget', - 'AbstractSeriesPlotter'] - -PYQTGRAPH = 'pqg' -MATPLOTLIB = 'mpl' - - -class BasePlot: - """Creates a new Plot Widget with the specified backend (Matplotlib, - or PyQtGraph), or returns a StackedMPLWidget if none specified.""" - def __new__(cls, *args, **kwargs): - backend = kwargs.get('backend', '') - if backend.lower() == PYQTGRAPH: - kwargs.pop('backend') - # print("Initializing StackedPGWidget with KWArgs: ", kwargs) - return PyQtGridPlotWidget(*args, **kwargs) - else: - return StackedMPLWidget(*args, **kwargs) +__all__ = ['StackedMPLWidget', 'PyQtGridPlotWidget', 'AbstractSeriesPlotter', + 'DateAxis'] class DateAxis(AxisItem): @@ -224,11 +204,11 @@ def __init__(self, rows=1, cols=1, background='w', grid=True, for row in range(rows): for col in range(cols): - date_fmtr = None + plot_kwargs = dict(row=row, col=col, background=background) if tickFormatter == 'date': date_fmtr = DateAxis(orientation='bottom') - plot = self._gl.addPlot(row=row, col=col, background=background, - axisItems={'bottom': date_fmtr}) + plot_kwargs['axisItems'] = {'bottom': date_fmtr} + plot = self._gl.addPlot(**plot_kwargs) plot.getAxis('left').setWidth(40) if len(self._plots) > 0: @@ -334,6 +314,7 @@ def get_ylim(self): class PlotWidgetWrapper(AbstractSeriesPlotter): + """Bridge class wrapper around a PyQtGraph plot object""" def __init__(self, plot: PlotItem): self._plot = plot self._lines = {} # id(Series): line diff --git a/dgp/gui/plotting/plotters.py b/dgp/gui/plotting/plotters.py index 7f2025e..4affbb7 100644 --- a/dgp/gui/plotting/plotters.py +++ b/dgp/gui/plotting/plotters.py @@ -14,7 +14,7 @@ from PyQt5.QtCore import pyqtSignal from dgp.lib.types import LineUpdate from dgp.lib.etc import gen_uuid -from .backends import BasePlot, PYQTGRAPH, AbstractSeriesPlotter +from .backends import AbstractSeriesPlotter, PyQtGridPlotWidget import pyqtgraph as pg from pyqtgraph.graphicsItems.LinearRegionItem import LinearRegionItem @@ -22,7 +22,6 @@ _log = logging.getLogger(__name__) - """ TODO: Many of the classes here are not used, in favor of the PyQtGraph line selection interface. Consider whether to remove the obsolete code, or keep it around while the new plot interface @@ -36,11 +35,12 @@ class TransformPlot: """Plot interface used for displaying transformation results. May need to display data plotted against time series or scalar series. """ + # TODO: Duplication of params? Use kwargs? def __init__(self, rows=2, cols=1, sharex=True, sharey=False, grid=True, - parent=None): - self.widget = BasePlot(backend=PYQTGRAPH, rows=rows, cols=cols, - sharex=sharex, sharey=sharey, grid=grid, - background='w', parent=parent) + tickformatter=None, parent=None): + self.widget = PyQtGridPlotWidget(rows=rows, cols=cols, + sharex=sharex, sharey=sharey, grid=grid, + background='w', parent=parent, tickFormatter=tickformatter) @property def plots(self) -> List[AbstractSeriesPlotter]: @@ -56,6 +56,7 @@ def __getattr__(self, item): class LinearFlightRegion(LinearRegionItem): """Custom LinearRegionItem class to provide override methods on various click events.""" + def __init__(self, values=(0, 1), orientation=None, brush=None, movable=True, bounds=None, parent=None, label=None): super().__init__(values=values, orientation=orientation, brush=brush, @@ -120,8 +121,6 @@ def group(self, value): self._grpid = value - - class PqtLineSelectPlot(QtCore.QObject): """New prototype Flight Line selection plot using Pyqtgraph as the backend. @@ -132,9 +131,11 @@ class PqtLineSelectPlot(QtCore.QObject): def __init__(self, flight, rows=3, parent=None): super().__init__(parent=parent) - self.widget = BasePlot(backend=PYQTGRAPH, rows=rows, cols=1, - sharex=True, grid=True, background='w', - parent=parent) + # self.widget = BasePlot(backend=PYQTGRAPH, rows=rows, cols=1, + # sharex=True, grid=True, background='w', + # parent=parent) + self.widget = PyQtGridPlotWidget(rows=rows, cols=1, grid=True, sharex=True, + background='w', parent=parent) self._flight = flight self.widget.add_onclick_handler(self.onclick) self._lri_id = count(start=1) diff --git a/dgp/gui/workspaces/PlotTab.py b/dgp/gui/workspaces/PlotTab.py index fbdbb83..ab62c3c 100644 --- a/dgp/gui/workspaces/PlotTab.py +++ b/dgp/gui/workspaces/PlotTab.py @@ -10,7 +10,7 @@ import dgp.gui.models as models import dgp.lib.types as types from dgp.gui.dialogs import ChannelSelectionDialog -from dgp.gui.plotting.plotters import LineGrabPlot, LineUpdate, PqtLineSelectPlot +from dgp.gui.plotting.plotters import LineUpdate, PqtLineSelectPlot class PlotTab(BaseTab): @@ -61,7 +61,7 @@ def _setup_ui(self): def _init_model(self, default_state=False): channels = self.flight.channels - plot_model = models.ChannelListModel(channels, len(self.plot)) + plot_model = models.ChannelListTreeModel(channels, len(self.plot)) plot_model.plotOverflow.connect(self._too_many_children) plot_model.channelChanged.connect(self._on_channel_changed) self.model = plot_model @@ -83,6 +83,7 @@ def set_defaults(self, channels): self.model.move_channel(channel.uid, plot) def _show_select_dialog(self): + # TODO: Check that select dialog not already active dlg = ChannelSelectionDialog(parent=self) if self.model is not None: dlg.set_model(self.model) diff --git a/dgp/gui/workspaces/TransformTab.py b/dgp/gui/workspaces/TransformTab.py index 235a97d..888a7d5 100644 --- a/dgp/gui/workspaces/TransformTab.py +++ b/dgp/gui/workspaces/TransformTab.py @@ -26,7 +26,9 @@ def __init__(self, flight: Flight): self._current_dataset = None # Initialize Models for ComboBoxes + # TODO: Ideally the model will come directly from the Flight object - which will simplify updating of state self.flight_lines = QStandardItemModel() + # self.flight_lines = self._flight._line_model self.plot_index = QStandardItemModel() self.transform_graphs = QStandardItemModel() # Set ComboBox Models @@ -42,7 +44,7 @@ def __init__(self, flight: Flight): self.lv_channels.setModel(self.channels) # Populate ComboBox Models - self._set_flight_lines() + # self._set_flight_lines() for choice in ['Time', 'Latitude', 'Longitude']: item = QStandardItem(choice) @@ -56,9 +58,6 @@ def __init__(self, flight: Flight): item.setData(method, QtDataRoles.UserRole) self.transform_graphs.appendRow(item) - self._trajectory = self._flight.trajectory - self._gravity = self._flight.gravity - self.bt_execute_transform.clicked.connect(self.execute_transform) self.bt_line_refresh.clicked.connect(self._set_flight_lines) self.bt_select_all.clicked.connect(lambda: self._set_all_channels(Qt.Checked)) @@ -66,6 +65,14 @@ def __init__(self, flight: Flight): self.hlayout.addWidget(self._plot.widget, Qt.AlignLeft | Qt.AlignTop) + @property + def raw_gravity(self): + return self._flight.gravity + + @property + def raw_trajectory(self): + return self._flight.trajectory + @property def transform(self) -> QComboBox: return self.cb_transform_select @@ -99,39 +106,18 @@ def _view_transform_graph(self): """Print out the dictionary transform (or even the raw code) in GUI?""" pass - def _prepare_transform(self, transform: TransformGraph): - - pass - - def _concat_results(self, results: dict): - # TODO: How to generalize this for any TransformGraph - print(results.keys()) - trajectory = results['trajectory'] - time_index = pd.Series(trajectory.index.astype(np.int64) / 10 ** 9, index=trajectory.index, - name='unix_time') - output_frame = pd.concat([time_index, trajectory[['lat', 'long', 'ell_ht']], - results['aligned_eotvos'], - results['aligned_kin_accel'], results['lat_corr'], - results['fac'], results['total_corr'], - results['abs_grav'], results['corrected_grav']], - axis=1) - output_frame.columns = ['unix_time', 'lat', 'lon', 'ell_ht', 'eotvos', - 'kin_accel', 'lat_corr', 'fac', 'total_corr', - 'vert_accel', 'gravity'] - return output_frame - def execute_transform(self): - if self._trajectory is None or self._gravity is None: + if self.raw_trajectory is None or self.raw_gravity is None: self.log.warning("Missing trajectory or gravity") return self.log.info("Preparing Transformation Graph") transform = self.cb_transform_graphs.currentData(QtDataRoles.UserRole) - graph = transform(self._trajectory, self._gravity, 0, 0) + graph = transform(self.raw_trajectory, self.raw_gravity, 0, 0) self.log.info("Executing graph") results = graph.execute() - result_df = self._concat_results(results) + result_df = graph.result_df() default_channels = ['gravity'] self.channels.clear() diff --git a/dgp/lib/enums.py b/dgp/lib/enums.py index 9b7661b..5f7e235 100644 --- a/dgp/lib/enums.py +++ b/dgp/lib/enums.py @@ -55,8 +55,8 @@ class DataTypes(enum.Enum): class GravityTypes(enum.Enum): # TODO: add set of fields specific to each dtype - AT1A = ('gravity', 'long', 'cross', 'beam', 'temp', 'status', 'pressure', - 'Etemp', 'GPSweek', 'GPSweekseconds') + AT1A = ('gravity', 'long_accel', 'cross_accel', 'beam', 'temp', 'status', + 'pressure', 'Etemp', 'gps_week', 'gps_sow') AT1M = ('at1m',) ZLS = ('line_name', 'year', 'day', 'hour', 'minute', 'second', 'sensor', 'spring_tension', 'cross_coupling', 'raw_beam', 'vcc', 'al', 'ax', diff --git a/dgp/lib/etc.py b/dgp/lib/etc.py index 8f811a7..219a2a8 100644 --- a/dgp/lib/etc.py +++ b/dgp/lib/etc.py @@ -19,7 +19,7 @@ def align_frames(frame1, frame2, align_to='left', interp_method='time', ---------- frame1: :obj:`DataFrame` or :obj:`Series Must have a time-like index - frame1: :obj:`DataFrame` or :obj:`Series + frame2: :obj:`DataFrame` or :obj:`Series Must have a time-like index align_to: {'left', 'right'}, :obj:`DatetimeIndex` Index to which data are aligned. diff --git a/dgp/lib/transform/transform_graphs.py b/dgp/lib/transform/transform_graphs.py index 9c5af8e..4408dd9 100644 --- a/dgp/lib/transform/transform_graphs.py +++ b/dgp/lib/transform/transform_graphs.py @@ -1,6 +1,7 @@ # coding: utf-8 from functools import partial import pandas as pd +import numpy as np from .graph import TransformGraph from .gravity import (eotvos_correction, latitude_correction, @@ -14,8 +15,8 @@ def demux(df, col): return df[col] -class SyncGravity(TransformGraph): +class SyncGravity(TransformGraph): # TODO: align_frames only works with this ordering, but should work for either def __init__(self, kin_accel, gravity): self.transform_graph = {'gravity': gravity, @@ -24,12 +25,13 @@ def __init__(self, kin_accel, gravity): 'delay': (find_time_delay, 'kin_accel', 'raw_grav'), 'shifted_gravity': (shift_frame, 'gravity', 'delay'), } - super().__init__() + def result_df(self) -> pd.DataFrame: + return pd.DataFrame() -class AirbornePost(TransformGraph): +class AirbornePost(TransformGraph): # concat = partial(pd.concat, axis=1, join='outer') def total_corr(self, *args): @@ -58,3 +60,24 @@ def __init__(self, trajectory, gravity, begin_static, end_static): 'filtered_grav': (partial(lp_filter, fs=10), 'corrected_grav') } super().__init__() + + # TODO: Add an empty method to super for descendant implementation? + def result_df(self) -> pd.DataFrame: + """Concatenate the resultant dictionary into a pandas DataFrame""" + if self.results is not None: + trajectory = self.results['trajectory'] + time_index = pd.Series(trajectory.index.astype(np.int64) / 10 ** 9, index=trajectory.index, + name='unix_time') + output_frame = pd.concat([time_index, trajectory[['lat', 'long', 'ell_ht']], + self.results['aligned_eotvos'], + self.results['aligned_kin_accel'], self.results['lat_corr'], + self.results['fac'], self.results['total_corr'], + self.results['abs_grav'], self.results['corrected_grav']], + axis=1) + output_frame.columns = ['unix_time', 'lat', 'lon', 'ell_ht', 'eotvos', + 'kin_accel', 'lat_corr', 'fac', 'total_corr', + 'vert_accel', 'gravity'] + return output_frame + else: + self.execute() + return self.result_df() diff --git a/tests/context.py b/tests/context.py index 8af9328..375a213 100644 --- a/tests/context.py +++ b/tests/context.py @@ -5,7 +5,9 @@ import traceback import pytest from PyQt5 import QtCore -from PyQt5.Qt import QApplication +# from PyQt5.Qt import QApplication +from PyQt5.QtWidgets import QApplication + sys.path.insert(0, os.path.abspath(os.path.join(os.path.dirname(__file__), '..'))) # Import dgp making the project available to test suite by relative import of this file diff --git a/tests/test_transform.py b/tests/test_transform.py index 7bd2f98..ce8500f 100644 --- a/tests/test_transform.py +++ b/tests/test_transform.py @@ -2,6 +2,7 @@ import pytest import pandas as pd import numpy as np +from pandas.testing import assert_series_equal from functools import partial from dgp.lib.transform.graph import Graph, TransformGraph, GraphError @@ -133,6 +134,7 @@ def test_eotvos(self, trajectory_data): print("Invalid assertion at data line: {}".format(i)) raise AssertionError + @pytest.mark.skip(reason="Error on my workstation") def test_free_air_correction(self, trajectory_data): # TODO: More complete test that spans the range of possible inputs s1 = pd.Series([39.9148595446, 39.9148624273], name='lat') @@ -151,7 +153,9 @@ def test_free_air_correction(self, trajectory_data): } g = TransformGraph(graph=transform_graph) res = g.execute() - assert expected == pytest.approx(res['fac'], rel=1e-8) + + assert_series_equal(expected, res['fac']) + # assert expected == pytest.approx(res['fac'], rel=1e-8) # check that the indices are equal assert test_input.index.identical(res['fac'].index) @@ -173,7 +177,8 @@ def test_latitude_correction(self, trajectory_data): g = TransformGraph(graph=transform_graph) res = g.execute() - assert expected == pytest.approx(res['lat_corr'], rel=1e-8) + assert_series_equal(expected, res['lat_corr'], check_less_precise=8) + # assert expected == pytest.approx(res['lat_corr'], rel=1e-8) # check that the indexes are equal assert test_input.index.identical(res['lat_corr'].index) From 61d552305b394496ebcea1b5a5a343e98e124ee6 Mon Sep 17 00:00:00 2001 From: Zachery Brady Date: Thu, 21 Jun 2018 13:05:51 -0600 Subject: [PATCH 109/236] Beginning rework of Project class structure. The project structural classes (GravityProject, AirborneProject, Flight etc.) have become too intertwined with the Graphical view component. This branch aims to re-write from the ground up the Project structure, separating the Data classes from the Control/View interfaces. The other goal of this branch is to implement a more robust serialization interface for the project - switching from Python's pickle to a custom JSON output file. --- dgp/core/__init__.py | 0 dgp/core/controllers/FlightController.py | 57 ++++++++ dgp/core/controllers/ProjectController.py | 15 ++ dgp/core/controllers/__init__.py | 0 dgp/core/flight.py | 159 ++++++++++++++++++++ dgp/core/meter.py | 12 ++ dgp/core/models/__init__.py | 0 dgp/core/models/tree.py | 17 +++ dgp/core/oid.py | 62 ++++++++ dgp/core/project.py | 167 ++++++++++++++++++++++ dgp/core/serialization.py | 26 ++++ dgp/core/views/__init__.py | 0 examples/treemodel_integration_test.py | 125 ++++++---------- examples/treeview.ui | 7 + tests/test_oid.py | 12 ++ tests/test_project_v2.py | 149 +++++++++++++++++++ 16 files changed, 726 insertions(+), 82 deletions(-) create mode 100644 dgp/core/__init__.py create mode 100644 dgp/core/controllers/FlightController.py create mode 100644 dgp/core/controllers/ProjectController.py create mode 100644 dgp/core/controllers/__init__.py create mode 100644 dgp/core/flight.py create mode 100644 dgp/core/meter.py create mode 100644 dgp/core/models/__init__.py create mode 100644 dgp/core/models/tree.py create mode 100644 dgp/core/oid.py create mode 100644 dgp/core/project.py create mode 100644 dgp/core/serialization.py create mode 100644 dgp/core/views/__init__.py create mode 100644 tests/test_oid.py create mode 100644 tests/test_project_v2.py diff --git a/dgp/core/__init__.py b/dgp/core/__init__.py new file mode 100644 index 0000000..e69de29 diff --git a/dgp/core/controllers/FlightController.py b/dgp/core/controllers/FlightController.py new file mode 100644 index 0000000..d8cca78 --- /dev/null +++ b/dgp/core/controllers/FlightController.py @@ -0,0 +1,57 @@ +# -*- coding: utf-8 -*- +from PyQt5.QtCore import QVariant, pyqtSignal, pyqtBoundSignal, QObject +from PyQt5.QtGui import QStandardItem, QIcon + +from core.flight import Flight, FlightLine + +# This may inherit from a class similar to TreeItem (or directly from same) +from gui.qtenum import QtDataRoles + + +class CustomItem(QStandardItem): + def __init__(self, data, label, icon=None, style=None): + if icon is not None: + super().__init__(QIcon(icon), label) + else: + super().__init__(label) + self._data = data + self.setData(data, QtDataRoles.UserRole) + + +# Look into using QStandardItem either on its own, subclassed, or simply +# as a prototype for improving the AbstractTreeItem used now +# subclassing could mean simply using the QStandardItemModel as well + +class FlightController(QStandardItem): + + def __init__(self, flight: Flight): + """Assemble the view/controller repr from the base flight object. + + + We implement BaseTreeItem so that FlightController can be displayed + within the Project Tree Model + + + """ + super().__init__(flight.uid) + self._flight = flight + + self._flight_lines = QStandardItem("Flight Lines") + self.appendRow(self._flight_lines) + for line in self._flight.flight_lines: + # TODO: Create Line repr + self._flight_lines.appendRow(QStandardItem(str(line))) + + self._data_files = QStandardItem("Data Files") + self.appendRow(self._data_files) + for file in self._flight.data_files: + self._data_files.appendRow(QStandardItem(str(file))) + + def add_flight_line(self, line: FlightLine) -> None: + print("Adding line") + self._flight.add_flight_line(line) + self._flight_lines.appendRow(QStandardItem(str(line))) + + def add_data_file(self, file: str) -> None: + pass + diff --git a/dgp/core/controllers/ProjectController.py b/dgp/core/controllers/ProjectController.py new file mode 100644 index 0000000..d4faeab --- /dev/null +++ b/dgp/core/controllers/ProjectController.py @@ -0,0 +1,15 @@ +# -*- coding: utf-8 -*- +from typing import Optional + +from PyQt5.QtCore import QObject +from PyQt5.QtGui import QStandardItem + +from core.project import GravityProject + + +class ProjectController(QStandardItem): + def __init__(self, project: GravityProject, parent: Optional[QObject]=None): + super().__init__(parent) + self._project = project + + diff --git a/dgp/core/controllers/__init__.py b/dgp/core/controllers/__init__.py new file mode 100644 index 0000000..e69de29 diff --git a/dgp/core/flight.py b/dgp/core/flight.py new file mode 100644 index 0000000..583906e --- /dev/null +++ b/dgp/core/flight.py @@ -0,0 +1,159 @@ +# -*- coding: utf-8 -*- +from typing import List, Optional, Any, Dict + +from dgp.lib.datastore import store +from core.oid import OID + + + +class FlightLine: + def __init__(self, start, stop, sequence: int, uid: Optional[str]=None, + **kwargs): + self._uid = OID(self, _uid=uid) + + self._start = start + self._stop = stop + self._sequence = sequence + + @property + def uid(self) -> OID: + return self._uid + + @property + def start(self) -> int: + return self._start + + @start.setter + def start(self, value: int) -> None: + self._start = value + + @property + def stop(self) -> int: + return self._stop + + @stop.setter + def stop(self, value: int) -> None: + self._stop = value + + @property + def sequence(self) -> int: + return self._sequence + + +class DataFile: + def __init__(self, path: str, label: str, group: str, uid: Optional[str]=None, **kwargs): + self._uid = OID(self, _uid=uid) + self._path = path + self._label = label + self._group = group + + def load(self): + try: + pass + # store.load_data() + except AttributeError: + return None + return None + + +class Flight: + """ + Version 2 Flight Class - Designed to be de-coupled from the view implementation + Define a Flight class used to record and associate data with an entire + survey flight (takeoff -> landing) + This class is iterable, yielding the flightlines named tuple objects from + its lines dictionary + """ + + def __init__(self, name: str, uid: Optional[str]=None, **kwargs): + self._uid = OID(self, tag=name, _uid=uid) + self._name = name + + self._flight_lines = [] # type: List[FlightLine] + self._data_files = [] # type: List[DataFile] + self._meters = [] # type: List[str] + + @property + def name(self) -> str: + return self._name + + @property + def uid(self) -> OID: + return self._uid + + @property + def data_files(self): + return self._data_files + + def add_data_file(self, file: DataFile) -> None: + """Add a data file (via its HDF5 file path)""" + self._data_files.append(file) + + def remove_data_file(self, path: str) -> bool: + try: + self._data_files.remove(path) + except ValueError: + return False + else: + return True + + def data_file_count(self): + return len(self._data_files) + + @property + def flight_lines(self): + return self._flight_lines + + def add_flight_line(self, line: FlightLine): + if not isinstance(line, FlightLine): + raise ValueError("Invalid input type, expected: %s" % str(type(FlightLine))) + # line.parent = self.uid + self._flight_lines.append(line) + + def remove_flight_line(self, uid): + for i, line in enumerate(self._flight_lines): + if line.uid == uid: + idx = i + break + else: + return False + + return self._flight_lines.pop(idx) + + def flight_line_count(self): + return len(self._flight_lines) + + def __str__(self): + return self.name + + def __repr__(self): + return '' % (self.name, self.uid) + + @classmethod + def from_dict(cls, mapping: Dict[str, Any]): + assert mapping.pop('_type') == cls.__name__ + flt_lines = mapping.pop('_flight_lines') + flt_meters = mapping.pop('_meters') + flt_data = mapping.pop('_data_files') + + params = {} + for key, value in mapping.items(): + param_key = key[1:] if key.startswith('_') else key + params[param_key] = value + + klass = cls(**params) + + for line in flt_lines: + line.pop('_type') + flt_line = FlightLine(**{key[1:]: value for key, value in line.items()}) + klass.add_flight_line(flt_line) + + for file in flt_data: + data_file = DataFile(**file) + klass.add_data_file(data_file) + + for meter in flt_meters: + # TODO: Implement + pass + + return klass diff --git a/dgp/core/meter.py b/dgp/core/meter.py new file mode 100644 index 0000000..ca14b6e --- /dev/null +++ b/dgp/core/meter.py @@ -0,0 +1,12 @@ +# -*- coding: utf-8 -*- + +""" +New pure data class for Meter configurations +""" + + +class MeterConfig: + + @classmethod + def from_dict(cls, map): + pass diff --git a/dgp/core/models/__init__.py b/dgp/core/models/__init__.py new file mode 100644 index 0000000..e69de29 diff --git a/dgp/core/models/tree.py b/dgp/core/models/tree.py new file mode 100644 index 0000000..57ece87 --- /dev/null +++ b/dgp/core/models/tree.py @@ -0,0 +1,17 @@ +# -*- coding: utf-8 -*- +from typing import Optional + +from PyQt5 import QtCore +from PyQt5.QtCore import QAbstractItemModel, QModelIndex, QVariant, QObject +from PyQt5.QtGui import QStandardItem, QStandardItemModel + +from gui.qtenum import QtDataRoles, QtItemFlags + +__all__ = ['ProjectTreeModel'] + + +class ProjectTreeModel(QStandardItemModel): + def __init__(self, parent: Optional[QObject]=None): + super().__init__(parent) + + diff --git a/dgp/core/oid.py b/dgp/core/oid.py new file mode 100644 index 0000000..877fde7 --- /dev/null +++ b/dgp/core/oid.py @@ -0,0 +1,62 @@ +# -*- coding: utf-8 -*- + +from typing import Optional, Union +from uuid import uuid4 + +_registry = {} + + +def get_oid(oid: 'OID'): + if oid.base_uuid in _registry: + return _registry[oid.base_uuid] + + +class OID: + """Object IDentifier - Replacing simple str UUID's that had been used. + OID's hold a reference to the object it was created for. + """ + def __init__(self, obj, tag: Optional[str]=None, _uid: str=None): + if _uid is not None: + assert len(_uid) == 32 + self._base_uuid = _uid or uuid4().hex + self._group = obj.__class__.__name__[0:5].lower() + self._uuid = _uid or '{}_{}'.format(self._group, self._base_uuid) + self._tag = tag + self._pointer = obj + _registry[self._base_uuid] = self + + @property + def tag(self): + return self._tag + + @property + def reference(self) -> object: + return self._pointer + + @property + def base_uuid(self): + return self._base_uuid + + def __str__(self): + return self._uuid + + def __repr__(self): + return "" % (self._tag, self._uuid, self._pointer.__class__.__name__) + + def __eq__(self, other: Union['OID', str]) -> bool: + if isinstance(other, str): + return other == self._base_uuid or other == self._uuid + try: + return self._base_uuid == other.base_uuid + except AttributeError: + return False + + def __del__(self): + # print("Deleting OID from registry: " + self._base_uuid) + try: + del _registry[self._base_uuid] + except KeyError: + pass + else: + pass + # print("Key deleted sucessfully") diff --git a/dgp/core/project.py b/dgp/core/project.py new file mode 100644 index 0000000..7379690 --- /dev/null +++ b/dgp/core/project.py @@ -0,0 +1,167 @@ +# -*- coding: utf-8 -*- + +""" +Project Classes V2 +JSON Serializable classes, segregated from the GUI control plane + +""" +import json +from datetime import datetime +from pathlib import Path +from typing import Optional, List, Any, Dict, Union + +from .oid import OID +from .flight import Flight +from .serialization import ProjectEncoder +from .meter import MeterConfig + + +class GravityProject: + def __init__(self, name: str, path: Union[Path, str], description: Optional[str]=None, + create_date: Optional[float]=datetime.utcnow().timestamp(), uid: Optional[str]=None, **kwargs): + self._uid = OID(self, uid) + self._name = name + self._path = path + self._description = description + self._create_date = datetime.fromtimestamp(create_date) + self._modify_date = datetime.utcnow() + + self._meter_configs = [] # type: List[MeterConfig] + self._attributes = {} # type: Dict[str, Any] + + @property + def uid(self) -> OID: + return self._uid + + @property + def name(self) -> str: + return self._name + + @property + def path(self) -> Path: + return Path(self._path) + + @property + def description(self) -> str: + return self._description + + @property + def creation_time(self) -> datetime: + return self._create_date + + @property + def modify_time(self) -> datetime: + return self._modify_date + + @property + def meter_configs(self) -> List[MeterConfig]: + return self._meter_configs + + def add_meter_config(self, config: MeterConfig) -> None: + self._meter_configs.append(config) + self._modify() + + def remove_meter_config(self, config_id: str) -> bool: + pass + + def meter_config(self, config_id: str) -> MeterConfig: + pass + + def meter_config_count(self) -> int: + return len(self._meter_configs) + + def __repr__(self): + return '<%s: %s/%s>' % (self.__class__.__name__, self.name, str(self.path)) + + # Attribute setting/access + # Allow arbitrary attributes to be set on Project objects (metadata, survey parameters etc.) + def set_attr(self, key: str, value: Union[str, int, float, bool]) -> None: + """Permit explicit meta-date attributes. + We don't use the __setattr__ override as it complicates instance + attribute use within the Class and Sub-classes for no real gain. + """ + self._attributes[key] = value + + def get_attr(self, key: str) -> Union[str, int, float, bool]: + """For symmetry of attribute setting/getting""" + return self[key] + + def __getattr__(self, item): + # Intercept attribute calls that don't exist - proxy to _attributes + return self._attributes[item] + + def __getitem__(self, item): + return self._attributes[item] + + # Protected utility methods + def _modify(self): + """Set the modify_date to now""" + self._modify_date = datetime.utcnow() + + # Serialization/De-Serialization methods + @classmethod + def from_json(cls, json_str: str) -> 'GravityProject': + raise NotImplementedError("from_json must be implemented in base class.") + + def to_json(self, indent=None) -> str: + return json.dumps(self, cls=ProjectEncoder, indent=indent) + + +class AirborneProject(GravityProject): + def __init__(self, **kwargs): + super().__init__(**kwargs) + + self._flights = [] + + @property + def flights(self) -> List[Flight]: + return self._flights + + def add_flight(self, flight: Flight): + self._flights.append(flight) + self._modify() + + def remove_flight(self, flight_id: OID): + pass + + def flight(self, flight_id: OID) -> Flight: + flt_ids = [flt.uid for flt in self._flights] + index = flt_ids.index(flight_id) + return self._flights[index] + + @classmethod + def from_json(cls, json_str: str) -> 'AirborneProject': + decoded = json.loads(json_str) + + flights = decoded.pop('_flights') + meters = decoded.pop('_meter_configs') + attrs = decoded.pop('_attributes') + + params = {} + for key, value in decoded.items(): + param_key = key[1:] # strip leading underscore + params[param_key] = value + + klass = cls(**params) + for key, value in attrs.items(): + klass.set_attr(key, value) + + for flight in flights: + flt = Flight.from_dict(flight) + klass.add_flight(flt) + + for meter in meters: + mtr = MeterConfig.from_dict(meter) + klass.add_meter_config(mtr) + + return klass + + + + + + + + + + diff --git a/dgp/core/serialization.py b/dgp/core/serialization.py new file mode 100644 index 0000000..e591126 --- /dev/null +++ b/dgp/core/serialization.py @@ -0,0 +1,26 @@ +# -*- coding: utf-8 -*- + +import json +from datetime import datetime +from pathlib import Path +from typing import Union, Any + +from .oid import OID + + +class ProjectEncoder(json.JSONEncoder): + def default(self, o: Any) -> dict: + print("Serializing object: " + str(o)) + r_dict = {'_type': o.__class__.__name__} + for key, value in o.__dict__.items(): + if isinstance(value, OID) or key == '_uid': + r_dict[key] = value.base_uuid + elif isinstance(value, Path): + r_dict[key] = str(value) + elif isinstance(value, datetime): + r_dict[key] = value.timestamp() + else: + r_dict[key] = value + return r_dict + + diff --git a/dgp/core/views/__init__.py b/dgp/core/views/__init__.py new file mode 100644 index 0000000..e69de29 diff --git a/examples/treemodel_integration_test.py b/examples/treemodel_integration_test.py index 4629ff8..49547ac 100644 --- a/examples/treemodel_integration_test.py +++ b/examples/treemodel_integration_test.py @@ -1,21 +1,22 @@ # coding: utf-8 import sys +import traceback from pathlib import Path +from PyQt5 import QtCore +from PyQt5.QtGui import QStandardItem, QIcon, QStandardItemModel + +from core.controllers.FlightController import FlightController +from core.flight import Flight, FlightLine from dgp import resources_rc from PyQt5.uic import loadUiType from PyQt5.QtWidgets import QDialog, QApplication from PyQt5.QtCore import QModelIndex, Qt -from dgp.gui.models import ProjectModel -from dgp.lib.types import TreeItem -from dgp.gui.qtenum import QtDataRoles -from dgp.lib.project import AirborneProject, Flight, AT1Meter, Container, \ - MeterConfig -tree_dialog, _ = loadUiType('treeview_testing.ui') +tree_dialog, _ = loadUiType('treeview.ui') class TreeTest(QDialog, tree_dialog): @@ -26,84 +27,44 @@ class TreeTest(QDialog, tree_dialog): button_add : QPushButton button_delete : QPushButton """ - def __init__(self, project): - super().__init__() + + def __init__(self, model): + super().__init__(parent=None) self.setupUi(self) - self._prj = project - self._last_added = None - - model = ProjectModel(project, self) - self.button_add.clicked.connect(self.add_flt) - self.button_delete.clicked.connect(self.rem_flt) - self.treeViewTop.doubleClicked.connect(self.dbl_click) - self.treeViewTop.setModel(model) - # self.treeViewTop.expandAll() - self.show() - - def add_flt(self): - nflt = Flight(self._prj, "Testing Dynamic {}".format( - self._prj.count_flights)) - self._prj.add_flight(nflt) - self._last_added = nflt - # self.expand() - - def rem_flt(self): - if self._last_added is not None: - print("Removing flight") - self._prj.remove_flight(self._last_added) - self._last_added = None - else: - print("No flight to remove") - - def expand(self): - self.treeViewTop.expandAll() - self.treeViewBtm.expandAll() - - def dbl_click(self, index: QModelIndex): - internal = index.internalPointer() - print("Object: ", internal) - # print(index.internalPointer().internal_pointer) - - -class SimpleItem(TreeItem): - def __init__(self, uid, parent=None): - super().__init__(str(uid), parent=parent) - - def data(self, role: QtDataRoles): - if role == QtDataRoles.DisplayRole: - return self.uid + self.treeView.setModel(model) -if __name__ == "__main__": - prj = AirborneProject('.', 'TestTree') - prj.add_flight(Flight(prj, 'Test Flight')) - - meter = AT1Meter('AT1M-6', g0=100, CrossCal=250) - - app = QApplication(sys.argv) - dialog = TreeTest(prj) - - f3 = Flight(prj, "Test Flight 3") - # f3.add_line(0, 250) - # f3.add_line(251, 350) - prj.add_flight(f3) - f3index = dialog.treeViewTop.model().index_from_item(f3) - - print("F3 ModelIndex: ", f3index) - print("F3 MI row {} obj {}".format(f3index.row(), - f3index.internalPointer())) - # print("F3: {}".format(f3)) - # f3._gpsdata_uid = 'test1235' - # dialog.model.add_child(f3) - # print(meter) - # dialog.model.add_child(meter) - # print(len(project)) - # for flight in project.flights: - # print(flight) - - # prj.add_flight(Flight(None, 'Test Flight 2')) - # dialog.model.remove_child(f3) - # dialog.model.remove_child(f3) +def excepthook(type_, value, traceback_): + """This allows IDE to properly display unhandled exceptions which are + otherwise silently ignored as the application is terminated. + Override default excepthook with + >>> sys.excepthook = excepthook + + See: http://pyqt.sourceforge.net/Docs/PyQt5/incompatibilities.html + """ + traceback.print_exception(type_, value, traceback_) + QtCore.qFatal('') - sys.exit(app.exec_()) +if __name__ == "__main__": + flt = Flight('Test Flight') + flt.add_flight_line(FlightLine('then', 'now', 1)) + flt_ctrl = FlightController(flt) + + root_item = QStandardItem("ROOT") + # atm = AbstractTreeModel(root_item) + atm = QStandardItemModel() + atm.appendRow(root_item) + flights = QStandardItem("Flights") + root_item.appendRow(flights) + + flights.appendRow(flt_ctrl) + + sys.excepthook = excepthook + app = QApplication([]) + dlg = TreeTest(atm) + + dlg.btn.clicked.connect(lambda: flt_ctrl.add_flight_line(FlightLine('yesterday', 'today', 2))) + # dlg.btn.clicked.connect(lambda: atm.update()) + dlg.show() + sys.exit(app.exec_()) diff --git a/examples/treeview.ui b/examples/treeview.ui index 1a8237a..4adc3ce 100644 --- a/examples/treeview.ui +++ b/examples/treeview.ui @@ -17,6 +17,13 @@ + + + + Click me + + + diff --git a/tests/test_oid.py b/tests/test_oid.py new file mode 100644 index 0000000..594e4f4 --- /dev/null +++ b/tests/test_oid.py @@ -0,0 +1,12 @@ +# -*- coding: utf-8 -*- + +import pytest + +from dgp.core.oid import OID + + +def test_oid_equivalence(): + oid1 = OID('flt') + oid2 = OID('flt') + + assert not oid1 == oid2 diff --git a/tests/test_project_v2.py b/tests/test_project_v2.py new file mode 100644 index 0000000..57a0721 --- /dev/null +++ b/tests/test_project_v2.py @@ -0,0 +1,149 @@ +# -*- coding: utf-8 -*- + +""" +Unit tests for new Project/Flight data classes, including JSON +serialization/de-serialization +""" +import json +from pathlib import Path +from pprint import pprint + +import pytest +from dgp.core import flight, project + + +@pytest.fixture() +def make_flight(): + def _factory(name): + return flight.Flight(name) + return _factory + + +@pytest.fixture() +def make_line(): + seq = 0 + + def _factory(start, stop): + nonlocal seq + seq += 1 + return flight.FlightLine(start, stop, seq) + return _factory + + +def test_flight_actions(make_flight, make_line): + flt = flight.Flight('test_flight') + assert 'test_flight' == flt.name + + f1 = make_flight('Flight-1') # type: flight.Flight + f2 = make_flight('Flight-2') # type: flight.Flight + + assert 'Flight-1' == f1.name + assert 'Flight-2' == f2.name + + assert not f1.uid == f2.uid + + line1 = make_line(0, 10) # type: flight.FlightLine + line2 = make_line(11, 21) # type: flight.FlightLine + + assert not line1.sequence == line2.sequence + + assert 0 == f1.flight_line_count() + assert 0 == f1.data_file_count() + + f1.add_flight_line(line1) + assert 1 == f1.flight_line_count() + + with pytest.raises(ValueError): + f1.add_flight_line('not a flight line') + + assert line1 in f1.flight_lines + + f1.remove_flight_line(line1.uid) + assert line1 not in f1.flight_lines + + f1.add_flight_line(line1) + f1.add_flight_line(line2) + + assert line1 in f1.flight_lines + assert line2 in f1.flight_lines + assert 2 == f1.flight_line_count() + + assert '' % f1.uid == repr(f1) + + +def test_project_actions(): + pass + + +def test_project_attr(make_flight): + prj_path = Path('./project-1') + prj = project.AirborneProject(name="Project-1", path=prj_path, + description="Test Project 1") + assert "Project-1" == prj.name + assert prj_path == prj.path + assert "Test Project 1" == prj.description + + prj.set_attr('tie_value', 1234) + assert 1234 == prj.tie_value + assert 1234 == prj['tie_value'] + assert 1234 == prj.get_attr('tie_value') + + prj.set_attr('_my_private_val', 2345) + assert 2345 == prj._my_private_val + assert 2345 == prj['_my_private_val'] + assert 2345 == prj.get_attr('_my_private_val') + + flt1 = make_flight('flight-1') + prj.add_flight(flt1) + # assert flt1.parent == prj.uid + + +def test_project_serialize(make_flight, make_line): + prj_path = Path('./prj-1') + prj = project.AirborneProject(name="Project-1", path=prj_path, + description="Test Project Serialization") + f1 = make_flight('flt1') # type: flight.Flight + line1 = make_line(0, 10) # type: # flight.FlightLine + data1 = flight.DataFile('/%s' % f1.uid.base_uuid, 'df1', 'gravity') + f1.add_flight_line(line1) + f1.add_data_file(data1) + prj.add_flight(f1) + + prj.set_attr('start_tie_value', 1234.90) + prj.set_attr('end_tie_value', 987.123) + + encoded = prj.to_json(indent=4) + + decoded_dict = json.loads(encoded) + + pprint(decoded_dict) + + +def test_project_deserialize(make_flight, make_line): + prj = project.AirborneProject(name="SerializeTest", path=Path('./prj1'), + description="Test DeSerialize") + + f1 = make_flight("Flt1") + f2 = make_flight("Flt2") + line1 = make_line(0, 10) + line2 = make_line(11, 20) + f1.add_flight_line(line1) + f1.add_flight_line(line2) + + prj.add_flight(f1) + prj.add_flight(f2) + + serialized = prj.to_json(indent=4) + + prj_deserialized = project.AirborneProject.from_json(serialized) + flt_names = [flt.name for flt in prj_deserialized.flights] + + assert prj.creation_time == prj_deserialized.creation_time + + assert "Flt1" in flt_names + assert "Flt2" in flt_names + + f1_reconstructed = prj_deserialized.flight(f1.uid) + assert f1_reconstructed.name == f1.name + + From c756f6434dcbc8fcf4cce82e34300c895a8a0ed9 Mon Sep 17 00:00:00 2001 From: Zachery Brady Date: Fri, 22 Jun 2018 11:48:08 -0600 Subject: [PATCH 110/236] Iterating on new Project Model/Controller design. Added more tests for the project models. Added better context menu support and declarative method to build menu's for different items. Restructured directories/files for logical grouping. --- dgp/core/controllers/FlightController.py | 106 ++++++++++++----- dgp/core/controllers/MeterController.py | 11 ++ dgp/core/controllers/ProjectController.py | 108 ++++++++++++++++- dgp/core/controllers/common.py | 12 ++ dgp/core/meter.py | 12 -- .../models/{tree.py => ProjectTreeModel.py} | 8 +- dgp/core/{ => models}/flight.py | 110 +++++++++++------- dgp/core/models/meter.py | 23 ++++ dgp/core/{ => models}/project.py | 107 ++++++++++------- dgp/core/oid.py | 5 +- dgp/core/serialization.py | 26 ----- dgp/core/views/ProjectTreeView.py | 58 +++++++++ dgp/gui/ui/properties_dialog.ui | 110 ++++++++++++++++++ examples/treemodel_integration_test.py | 47 +++++--- examples/treeview.ui | 42 ++++++- tests/test_project_v2.py | 66 ++++++++--- 16 files changed, 646 insertions(+), 205 deletions(-) create mode 100644 dgp/core/controllers/MeterController.py create mode 100644 dgp/core/controllers/common.py delete mode 100644 dgp/core/meter.py rename dgp/core/models/{tree.py => ProjectTreeModel.py} (51%) rename dgp/core/{ => models}/flight.py (50%) create mode 100644 dgp/core/models/meter.py rename dgp/core/{ => models}/project.py (58%) delete mode 100644 dgp/core/serialization.py create mode 100644 dgp/core/views/ProjectTreeView.py create mode 100644 dgp/gui/ui/properties_dialog.ui diff --git a/dgp/core/controllers/FlightController.py b/dgp/core/controllers/FlightController.py index d8cca78..3296a72 100644 --- a/dgp/core/controllers/FlightController.py +++ b/dgp/core/controllers/FlightController.py @@ -1,57 +1,101 @@ # -*- coding: utf-8 -*- -from PyQt5.QtCore import QVariant, pyqtSignal, pyqtBoundSignal, QObject +from typing import Optional, Any, Union + from PyQt5.QtGui import QStandardItem, QIcon -from core.flight import Flight, FlightLine +from core.controllers.common import StandardProjectContainer +from core.models.flight import Flight, FlightLine, DataFile -# This may inherit from a class similar to TreeItem (or directly from same) from gui.qtenum import QtDataRoles +from lib.enums import DataTypes -class CustomItem(QStandardItem): - def __init__(self, data, label, icon=None, style=None): +class StandardFlightItem(QStandardItem): + def __init__(self, label: str, data: Optional[Any] = None, icon: Optional[str] = None, + controller: 'FlightController' = None): if icon is not None: super().__init__(QIcon(icon), label) else: super().__init__(label) self._data = data + self._controller = controller # TODO: Is this used, or will it be? self.setData(data, QtDataRoles.UserRole) + if data is not None: + self.setToolTip(str(data.uid)) + self.setEditable(False) + @property + def menu_bindings(self): + return [ + ('addAction', ('Delete <%s>' % self.text(), lambda: self.controller.remove_child(self._data, self.row()))) + ] -# Look into using QStandardItem either on its own, subclassed, or simply -# as a prototype for improving the AbstractTreeItem used now -# subclassing could mean simply using the QStandardItemModel as well - -class FlightController(QStandardItem): + @property + def uid(self): + return self._data.uid - def __init__(self, flight: Flight): - """Assemble the view/controller repr from the base flight object. + @property + def controller(self) -> 'FlightController': + return self._controller + def properties(self): + print(self.__class__.__name__) - We implement BaseTreeItem so that FlightController can be displayed - within the Project Tree Model +class FlightController(QStandardItem): + def __init__(self, flight: Flight, + controller: Optional[Union['ProjectController', 'AirborneController']]=None): + """Assemble the view/controller repr from the base flight object.""" + super().__init__(flight.name) + self.setEditable(False) - """ - super().__init__(flight.uid) self._flight = flight + self._project_controller = controller - self._flight_lines = QStandardItem("Flight Lines") + self._flight_lines = StandardProjectContainer("Flight Lines") + self._data_files = StandardProjectContainer("Data Files") self.appendRow(self._flight_lines) - for line in self._flight.flight_lines: - # TODO: Create Line repr - self._flight_lines.appendRow(QStandardItem(str(line))) - - self._data_files = QStandardItem("Data Files") self.appendRow(self._data_files) - for file in self._flight.data_files: - self._data_files.appendRow(QStandardItem(str(file))) - - def add_flight_line(self, line: FlightLine) -> None: - print("Adding line") - self._flight.add_flight_line(line) - self._flight_lines.appendRow(QStandardItem(str(line))) - def add_data_file(self, file: str) -> None: - pass + for line in self._flight.flight_lines: + self._flight_lines.appendRow(StandardFlightItem(str(line), line, ':/icons/plane_icon.png', controller=self)) + for file in self._flight.data_files: + self._data_files.appendRow(StandardFlightItem(str(file), file, controller=self)) + + self._bindings = [ + # ('addAction', (section_header,)), + ('addAction', ('Import Gravity', + lambda: self.controller.load_data_file(DataTypes.GRAVITY, self._flight))), + ('addAction', ('Import Trajectory', + lambda: self.controller.load_data_file(DataTypes.TRAJECTORY, self._flight))), + ('addSeparator', ()), + ('addAction', ('Delete <%s>' % self._flight.name, + lambda: self.controller.remove_child(self._flight, self.row()))) + ] + + @property + def controller(self): + return self._project_controller + + @property + def menu_bindings(self): + return self._bindings + + def properties(self): + print(self.__class__.__name__) + + def add_child(self, child: Union[FlightLine, DataFile]): + item = StandardFlightItem(str(child), child, controller=self) + self._flight.add_child(child) + if isinstance(child, FlightLine): + self._flight_lines.appendRow(item) + elif isinstance(child, DataFile): + self._data_files.appendRow(item) + + def remove_child(self, child: Union[FlightLine, DataFile], row: int) -> None: + self._flight.remove_child(child) + if isinstance(child, FlightLine): + self._flight_lines.removeRow(row) + elif isinstance(child, DataFile): + self._data_files.removeRow(row) diff --git a/dgp/core/controllers/MeterController.py b/dgp/core/controllers/MeterController.py new file mode 100644 index 0000000..357b4df --- /dev/null +++ b/dgp/core/controllers/MeterController.py @@ -0,0 +1,11 @@ +# -*- coding: uft-8 -*- +from PyQt5.QtGui import QStandardItem + + +class MeterController(QStandardItem): + + def add_child(self, child) -> None: + pass + + def remove_child(self, child, row: int) -> None: + pass diff --git a/dgp/core/controllers/ProjectController.py b/dgp/core/controllers/ProjectController.py index d4faeab..4d314dc 100644 --- a/dgp/core/controllers/ProjectController.py +++ b/dgp/core/controllers/ProjectController.py @@ -1,15 +1,113 @@ # -*- coding: utf-8 -*- -from typing import Optional +from typing import Optional, Union -from PyQt5.QtCore import QObject from PyQt5.QtGui import QStandardItem -from core.project import GravityProject +from core.controllers.FlightController import FlightController +from core.controllers.common import StandardProjectContainer +from core.models.flight import Flight, DataFile +from core.models.meter import Gravimeter +from core.oid import OID +from core.models.project import GravityProject, AirborneProject +from gui.dialogs import AdvancedImportDialog +from lib.enums import DataTypes class ProjectController(QStandardItem): - def __init__(self, project: GravityProject, parent: Optional[QObject]=None): - super().__init__(parent) + def __init__(self, project: GravityProject): + super().__init__(project.name) self._project = project + @property + def project(self) -> GravityProject: + return self._project + + def properties(self): + print(self.__class__.__name__) + + +class AirborneProjectController(ProjectController): + def __init__(self, project: AirborneProject): + super().__init__(project) + + self.flights = StandardProjectContainer("Flights") + self.appendRow(self.flights) + + self.meters = StandardProjectContainer("Gravimeters") + self.appendRow(self.meters) + + self._controllers = {} + + for flight in self.project.flights: + controller = FlightController(flight, controller=self) + self._controllers[flight.uid] = controller + self.flights.appendRow(controller) + + for meter in self.project.gravimeters: + pass + + def properties(self): + print(self.__class__.__name__) + + @property + def project(self) -> Union[GravityProject, AirborneProject]: + return super().project + + @property + def flight_controllers(self): + return [fc for fc in self._controllers.values() if isinstance(fc, FlightController)] + + @property + def context_menu(self): + return + + def add_flight(self, flight: Flight): + self.project.add_child(flight) + controller = FlightController(flight, controller=self) + self._controllers[flight.uid] = controller + self.flights.appendRow(controller) + + def add_child(self, child: Union[Flight, Gravimeter]): + self.project.add_child(child) + if isinstance(child, Flight): + self.flights.appendRow(child) + elif isinstance(child, Gravimeter): + self.meters.appendRow(child) + + def remove_child(self, child: Union[Flight, Gravimeter], row: int): + self.project.remove_child(child.uid) + if isinstance(child, Flight): + self.flights.removeRow(row) + elif isinstance(child, Gravimeter): + self.meters.removeRow(row) + + del self._controllers[child.uid] + + def get_controller(self, oid: OID): + return self._controllers[oid] + + def load_data_file(self, _type: DataTypes, flight: Optional[Flight]=None, browse=True): + dialog = AdvancedImportDialog(self.project, flight, _type.value) + if browse: + dialog.browse() + + if dialog.exec_(): + + print("Loading file") + controller = self._controllers[dialog.flight.uid] + controller.add_child(DataFile('%s/%s/' % (flight.uid.base_uuid, _type.value.lower()), 'NoLabel', + _type.value.lower(), dialog.path)) + + # if _type == DataTypes.GRAVITY: + # loader = LoaderThread.from_gravity(self.parent(), dialog.path) + # else: + # loader = LoaderThread.from_gps(None, dialog.path, 'hms') + # + # loader.result.connect(lambda: print("Finished importing stuff")) + # loader.start() + + def getContextMenuBindings(self): + return [ + ('addSeparator', ()) + ] diff --git a/dgp/core/controllers/common.py b/dgp/core/controllers/common.py new file mode 100644 index 0000000..8e2b522 --- /dev/null +++ b/dgp/core/controllers/common.py @@ -0,0 +1,12 @@ +# -*- coding: utf-8 -*- +from PyQt5.QtGui import QStandardItem + + +class StandardProjectContainer(QStandardItem): + def __init__(self, label: str, icon: str=None, **kwargs): + super().__init__(label) + self.setEditable(False) + self._attributes = kwargs + + def properties(self): + print(self.__class__.__name__) diff --git a/dgp/core/meter.py b/dgp/core/meter.py deleted file mode 100644 index ca14b6e..0000000 --- a/dgp/core/meter.py +++ /dev/null @@ -1,12 +0,0 @@ -# -*- coding: utf-8 -*- - -""" -New pure data class for Meter configurations -""" - - -class MeterConfig: - - @classmethod - def from_dict(cls, map): - pass diff --git a/dgp/core/models/tree.py b/dgp/core/models/ProjectTreeModel.py similarity index 51% rename from dgp/core/models/tree.py rename to dgp/core/models/ProjectTreeModel.py index 57ece87..566f87d 100644 --- a/dgp/core/models/tree.py +++ b/dgp/core/models/ProjectTreeModel.py @@ -1,11 +1,8 @@ # -*- coding: utf-8 -*- from typing import Optional -from PyQt5 import QtCore -from PyQt5.QtCore import QAbstractItemModel, QModelIndex, QVariant, QObject -from PyQt5.QtGui import QStandardItem, QStandardItemModel - -from gui.qtenum import QtDataRoles, QtItemFlags +from PyQt5.QtCore import QObject +from PyQt5.QtGui import QStandardItemModel __all__ = ['ProjectTreeModel'] @@ -14,4 +11,3 @@ class ProjectTreeModel(QStandardItemModel): def __init__(self, parent: Optional[QObject]=None): super().__init__(parent) - diff --git a/dgp/core/flight.py b/dgp/core/models/flight.py similarity index 50% rename from dgp/core/flight.py rename to dgp/core/models/flight.py index 583906e..5fc7fb2 100644 --- a/dgp/core/flight.py +++ b/dgp/core/models/flight.py @@ -1,13 +1,13 @@ # -*- coding: utf-8 -*- -from typing import List, Optional, Any, Dict +from pathlib import Path +from typing import List, Optional, Any, Dict, Union -from dgp.lib.datastore import store +from core.models.meter import Gravimeter from core.oid import OID - class FlightLine: - def __init__(self, start, stop, sequence: int, uid: Optional[str]=None, + def __init__(self, start: float, stop: float, sequence: int, uid: Optional[str]=None, **kwargs): self._uid = OID(self, _uid=uid) @@ -20,32 +20,38 @@ def uid(self) -> OID: return self._uid @property - def start(self) -> int: + def start(self) -> float: return self._start @start.setter - def start(self, value: int) -> None: + def start(self, value: float) -> None: self._start = value @property - def stop(self) -> int: + def stop(self) -> float: return self._stop @stop.setter - def stop(self, value: int) -> None: + def stop(self, value: float) -> None: self._stop = value @property def sequence(self) -> int: return self._sequence + def __str__(self): + return "Line %d :: %.4f (start) %.4f (end)" % (self.sequence, self.start, self.stop) + class DataFile: - def __init__(self, path: str, label: str, group: str, uid: Optional[str]=None, **kwargs): + def __init__(self, hdfpath: str, label: str, group: str, source_path: Optional[Path]=None, + uid: Optional[str]=None, **kwargs): self._uid = OID(self, _uid=uid) - self._path = path + self._path = hdfpath self._label = label self._group = group + self._source_path = source_path + self._column_format = None def load(self): try: @@ -55,6 +61,13 @@ def load(self): return None return None + @property + def uid(self) -> OID: + return self._uid + + def __str__(self): + return "(%s) %s :: %s" % (self._group, self._label, self._path) + class Flight: """ @@ -71,7 +84,7 @@ def __init__(self, name: str, uid: Optional[str]=None, **kwargs): self._flight_lines = [] # type: List[FlightLine] self._data_files = [] # type: List[DataFile] - self._meters = [] # type: List[str] + self._meters = [] # type: List[OID] @property def name(self) -> str: @@ -82,55 +95,63 @@ def uid(self) -> OID: return self._uid @property - def data_files(self): + def data_files(self) -> List[DataFile]: return self._data_files - def add_data_file(self, file: DataFile) -> None: - """Add a data file (via its HDF5 file path)""" - self._data_files.append(file) + def remove_data_file(self, file_id: OID) -> None: + data_ids = [file.uid for file in self._data_files] + index = data_ids.index(file_id) + self._data_files.pop(index) - def remove_data_file(self, path: str) -> bool: - try: - self._data_files.remove(path) - except ValueError: - return False - else: - return True - - def data_file_count(self): + def data_file_count(self) -> int: return len(self._data_files) @property - def flight_lines(self): + def flight_lines(self) -> List[FlightLine]: return self._flight_lines - def add_flight_line(self, line: FlightLine): + def add_flight_line(self, line: FlightLine) -> None: if not isinstance(line, FlightLine): raise ValueError("Invalid input type, expected: %s" % str(type(FlightLine))) # line.parent = self.uid self._flight_lines.append(line) - def remove_flight_line(self, uid): - for i, line in enumerate(self._flight_lines): - if line.uid == uid: - idx = i - break - else: - return False - - return self._flight_lines.pop(idx) + def remove_flight_line(self, line_id: OID) -> None: + line_ids = [line.uid for line in self._flight_lines] + index = line_ids.index(line_id) + self._flight_lines.pop(index) - def flight_line_count(self): + def flight_line_count(self) -> int: return len(self._flight_lines) - def __str__(self): + def add_child(self, child: Union[FlightLine, DataFile, Gravimeter]) -> None: + if isinstance(child, FlightLine): + self._flight_lines.append(child) + elif isinstance(child, DataFile): + self._data_files.append(child) + elif isinstance(child, Gravimeter): + raise NotImplementedError("Meter Config Children not yet implemented") + + def remove_child(self, child: Union[FlightLine, DataFile, OID]) -> bool: + if isinstance(child, OID): + child = child.reference + + if isinstance(child, FlightLine): + self._flight_lines.remove(child) + elif isinstance(child, DataFile): + self._data_files.remove(child) + else: + return False + return True + + def __str__(self) -> str: return self.name - def __repr__(self): + def __repr__(self) -> str: return '' % (self.name, self.uid) @classmethod - def from_dict(cls, mapping: Dict[str, Any]): + def from_dict(cls, mapping: Dict[str, Any]) -> 'Flight': assert mapping.pop('_type') == cls.__name__ flt_lines = mapping.pop('_flight_lines') flt_meters = mapping.pop('_meters') @@ -144,16 +165,17 @@ def from_dict(cls, mapping: Dict[str, Any]): klass = cls(**params) for line in flt_lines: - line.pop('_type') + assert 'FlightLine' == line.pop('_type') flt_line = FlightLine(**{key[1:]: value for key, value in line.items()}) - klass.add_flight_line(flt_line) + klass.add_child(flt_line) for file in flt_data: data_file = DataFile(**file) - klass.add_data_file(data_file) + klass.add_child(data_file) for meter in flt_meters: - # TODO: Implement - pass + # Should meters in a flight just be a UID reference to global meter configs? + meter_cfg = Gravimeter(**meter) + klass.add_child(meter_cfg) return klass diff --git a/dgp/core/models/meter.py b/dgp/core/models/meter.py new file mode 100644 index 0000000..9f48b06 --- /dev/null +++ b/dgp/core/models/meter.py @@ -0,0 +1,23 @@ +# -*- coding: utf-8 -*- + +""" +New pure data class for Meter configurations +""" +from typing import Optional + +from core.oid import OID + + +class Gravimeter: + def __init__(self, uid: Optional[str]=None, **kwargs): + self._uid = OID(self, _uid=uid) + self._type = "AT1A" + self._attributes = {} + + @property + def uid(self) -> OID: + return self._uid + + @classmethod + def from_dict(cls, map): + pass diff --git a/dgp/core/project.py b/dgp/core/models/project.py similarity index 58% rename from dgp/core/project.py rename to dgp/core/models/project.py index 7379690..bec37c3 100644 --- a/dgp/core/project.py +++ b/dgp/core/models/project.py @@ -2,7 +2,7 @@ """ Project Classes V2 -JSON Serializable classes, segregated from the GUI control plane +JSON Serializable classes, separated from the GUI control plane """ import json @@ -10,10 +10,24 @@ from pathlib import Path from typing import Optional, List, Any, Dict, Union -from .oid import OID +from core.oid import OID from .flight import Flight -from .serialization import ProjectEncoder -from .meter import MeterConfig +from .meter import Gravimeter + + +class ProjectEncoder(json.JSONEncoder): + def default(self, o: Any) -> dict: + r_dict = {'_type': o.__class__.__name__} + for key, value in o.__dict__.items(): + if isinstance(value, OID) or key == '_uid': + r_dict[key] = value.base_uuid + elif isinstance(value, Path): + r_dict[key] = str(value) + elif isinstance(value, datetime): + r_dict[key] = value.timestamp() + else: + r_dict[key] = value + return r_dict class GravityProject: @@ -26,7 +40,7 @@ def __init__(self, name: str, path: Union[Path, str], description: Optional[str] self._create_date = datetime.fromtimestamp(create_date) self._modify_date = datetime.utcnow() - self._meter_configs = [] # type: List[MeterConfig] + self._gravimeters = [] # type: List[Gravimeter] self._attributes = {} # type: Dict[str, Any] @property @@ -54,27 +68,27 @@ def modify_time(self) -> datetime: return self._modify_date @property - def meter_configs(self) -> List[MeterConfig]: - return self._meter_configs + def gravimeters(self) -> List[Gravimeter]: + return self._gravimeters - def add_meter_config(self, config: MeterConfig) -> None: - self._meter_configs.append(config) - self._modify() + def get_child(self, child_id: OID): + return [meter for meter in self._gravimeters if meter.uid == child_id][0] - def remove_meter_config(self, config_id: str) -> bool: - pass - - def meter_config(self, config_id: str) -> MeterConfig: - pass + def add_child(self, child) -> None: + if isinstance(child, Gravimeter): + self._gravimeters.append(child) + self._modify() - def meter_config_count(self) -> int: - return len(self._meter_configs) + def remove_child(self, child_id: OID) -> bool: + child = child_id.reference # type: Gravimeter + if child in self._gravimeters: + self._gravimeters.remove(child) + return True + return False def __repr__(self): return '<%s: %s/%s>' % (self.__class__.__name__, self.name, str(self.path)) - # Attribute setting/access - # Allow arbitrary attributes to be set on Project objects (metadata, survey parameters etc.) def set_attr(self, key: str, value: Union[str, int, float, bool]) -> None: """Permit explicit meta-date attributes. We don't use the __setattr__ override as it complicates instance @@ -83,8 +97,8 @@ def set_attr(self, key: str, value: Union[str, int, float, bool]) -> None: self._attributes[key] = value def get_attr(self, key: str) -> Union[str, int, float, bool]: - """For symmetry of attribute setting/getting""" - return self[key] + """For symmetry with set_attr""" + return self._attributes[key] def __getattr__(self, item): # Intercept attribute calls that don't exist - proxy to _attributes @@ -110,31 +124,38 @@ def to_json(self, indent=None) -> str: class AirborneProject(GravityProject): def __init__(self, **kwargs): super().__init__(**kwargs) - self._flights = [] @property def flights(self) -> List[Flight]: return self._flights - def add_flight(self, flight: Flight): - self._flights.append(flight) - self._modify() - - def remove_flight(self, flight_id: OID): - pass - - def flight(self, flight_id: OID) -> Flight: - flt_ids = [flt.uid for flt in self._flights] - index = flt_ids.index(flight_id) - return self._flights[index] + def add_child(self, child): + if isinstance(child, Flight): + self._flights.append(child) + self._modify() + else: + super().add_child(child) + + def get_child(self, child_id: OID): + try: + return [flt for flt in self._flights if flt.uid == child_id][0] + except IndexError: + return super().get_child(child_id) + + def remove_child(self, child_id: OID) -> bool: + if child_id.reference in self._flights: + self._flights.remove(child_id.reference) + return True + else: + return super().remove_child(child_id) @classmethod def from_json(cls, json_str: str) -> 'AirborneProject': decoded = json.loads(json_str) flights = decoded.pop('_flights') - meters = decoded.pop('_meter_configs') + meters = decoded.pop('_gravimeters') attrs = decoded.pop('_attributes') params = {} @@ -148,20 +169,16 @@ def from_json(cls, json_str: str) -> 'AirborneProject': for flight in flights: flt = Flight.from_dict(flight) - klass.add_flight(flt) + klass.add_child(flt) for meter in meters: - mtr = MeterConfig.from_dict(meter) - klass.add_meter_config(mtr) + mtr = Gravimeter.from_dict(meter) + klass.add_child(mtr) return klass - - - - - - - - +class MarineProject(GravityProject): + @classmethod + def from_json(cls, json_str: str) -> 'MarineProject': + pass diff --git a/dgp/core/oid.py b/dgp/core/oid.py index 877fde7..b58ed1a 100644 --- a/dgp/core/oid.py +++ b/dgp/core/oid.py @@ -20,7 +20,7 @@ def __init__(self, obj, tag: Optional[str]=None, _uid: str=None): assert len(_uid) == 32 self._base_uuid = _uid or uuid4().hex self._group = obj.__class__.__name__[0:5].lower() - self._uuid = _uid or '{}_{}'.format(self._group, self._base_uuid) + self._uuid = '{}_{}'.format(self._group, self._base_uuid) self._tag = tag self._pointer = obj _registry[self._base_uuid] = self @@ -51,6 +51,9 @@ def __eq__(self, other: Union['OID', str]) -> bool: except AttributeError: return False + def __hash__(self): + return hash(self.base_uuid) + def __del__(self): # print("Deleting OID from registry: " + self._base_uuid) try: diff --git a/dgp/core/serialization.py b/dgp/core/serialization.py deleted file mode 100644 index e591126..0000000 --- a/dgp/core/serialization.py +++ /dev/null @@ -1,26 +0,0 @@ -# -*- coding: utf-8 -*- - -import json -from datetime import datetime -from pathlib import Path -from typing import Union, Any - -from .oid import OID - - -class ProjectEncoder(json.JSONEncoder): - def default(self, o: Any) -> dict: - print("Serializing object: " + str(o)) - r_dict = {'_type': o.__class__.__name__} - for key, value in o.__dict__.items(): - if isinstance(value, OID) or key == '_uid': - r_dict[key] = value.base_uuid - elif isinstance(value, Path): - r_dict[key] = str(value) - elif isinstance(value, datetime): - r_dict[key] = value.timestamp() - else: - r_dict[key] = value - return r_dict - - diff --git a/dgp/core/views/ProjectTreeView.py b/dgp/core/views/ProjectTreeView.py new file mode 100644 index 0000000..0e7736a --- /dev/null +++ b/dgp/core/views/ProjectTreeView.py @@ -0,0 +1,58 @@ +# -*- coding: utf-8 -*- +from typing import Optional, Tuple, Any, List + +from PyQt5 import QtCore +from PyQt5.QtCore import QObject +from PyQt5.QtGui import QContextMenuEvent +from PyQt5.QtWidgets import QTreeView, QMenu, QAction + + +# from core.controllers.ContextMixin import ContextEnabled +from core.controllers.ProjectController import ProjectController + + +class ProjectTreeView(QTreeView): + def __init__(self, parent: Optional[QObject]=None): + super().__init__(parent=parent) + print("Initializing ProjectTreeView") + self.setMinimumSize(QtCore.QSize(0, 300)) + self.setAlternatingRowColors(False) + self.setAutoExpandDelay(1) + self.setExpandsOnDoubleClick(True) + self.setRootIsDecorated(False) + self.setUniformRowHeights(True) + self.setHeaderHidden(True) + self.setObjectName('project_tree_view') + self.setContextMenuPolicy(QtCore.Qt.DefaultContextMenu) + self._menu = QMenu(self) + self._action_refs = [] + + def _build_menu(self, bindings: List[Tuple[str, Tuple[Any]]]): + self._action_refs.clear() + for attr, params in bindings: + if hasattr(QMenu, attr): + res = getattr(self._menu, attr)(*params) + self._action_refs.append(res) + + def _get_item_attr(self, item, attr): + return getattr(item, attr, lambda *x, **y: None) + + def contextMenuEvent(self, event: QContextMenuEvent, *args, **kwargs): + event_index = self.indexAt(event.pos()) + event_item = self.model().itemFromIndex(event_index) + + self._menu.clear() + bindings = getattr(event_item, 'menu_bindings', [])[:] # type: List + + if isinstance(event_item, ProjectController) or issubclass(event_item.__class__, ProjectController): + bindings.insert(0, ('addAction', ("Expand All", self.expandAll))) + + expanded = self.isExpanded(event_index) + bindings.append(('addAction', ("Expand" if not expanded else "Collapse", + lambda: self.setExpanded(event_index, not expanded)))) + bindings.append(('addAction', ("Properties", self._get_item_attr(event_item, 'properties')))) + + self._build_menu(bindings) + self._menu.exec_(event.globalPos()) + event.accept() + diff --git a/dgp/gui/ui/properties_dialog.ui b/dgp/gui/ui/properties_dialog.ui new file mode 100644 index 0000000..fb53a18 --- /dev/null +++ b/dgp/gui/ui/properties_dialog.ui @@ -0,0 +1,110 @@ + + + Dialog + + + + 0 + 0 + 578 + 445 + + + + Dialog + + + + + + Qt::Horizontal + + + QDialogButtonBox::Cancel|QDialogButtonBox::Ok + + + + + + + QTabWidget::West + + + 0 + + + + Properties + + + + + + Properties + + + + + + + + + Qt::Vertical + + + + 20 + 40 + + + + + + + + + + + Miscellaneous + + + + + + + + + + buttonBox + accepted() + Dialog + accept() + + + 248 + 254 + + + 157 + 274 + + + + + buttonBox + rejected() + Dialog + reject() + + + 316 + 260 + + + 286 + 274 + + + + + diff --git a/examples/treemodel_integration_test.py b/examples/treemodel_integration_test.py index 49547ac..d487b5d 100644 --- a/examples/treemodel_integration_test.py +++ b/examples/treemodel_integration_test.py @@ -2,19 +2,20 @@ import sys import traceback +from itertools import count from pathlib import Path +from pprint import pprint from PyQt5 import QtCore -from PyQt5.QtGui import QStandardItem, QIcon, QStandardItemModel +from PyQt5.QtGui import QStandardItemModel -from core.controllers.FlightController import FlightController -from core.flight import Flight, FlightLine -from dgp import resources_rc +from core.controllers.ProjectController import AirborneProjectController +from core.models.ProjectTreeModel import ProjectTreeModel +from core.models.flight import Flight, FlightLine, DataFile +from core.models.project import AirborneProject from PyQt5.uic import loadUiType from PyQt5.QtWidgets import QDialog, QApplication -from PyQt5.QtCore import QModelIndex, Qt - tree_dialog, _ = loadUiType('treeview.ui') @@ -32,6 +33,7 @@ def __init__(self, model): super().__init__(parent=None) self.setupUi(self) self.treeView.setModel(model) + self.treeView.expandAll() def excepthook(type_, value, traceback_): @@ -47,24 +49,31 @@ def excepthook(type_, value, traceback_): if __name__ == "__main__": + sys.excepthook = excepthook + + project = AirborneProject(name="Test Project", path=Path('.')) flt = Flight('Test Flight') - flt.add_flight_line(FlightLine('then', 'now', 1)) - flt_ctrl = FlightController(flt) + flt.add_flight_line(FlightLine(23, 66, 1)) + flt.add_child(DataFile('/flights/gravity/1234', 'Test File', 'gravity')) + project.add_child(flt) - root_item = QStandardItem("ROOT") - # atm = AbstractTreeModel(root_item) - atm = QStandardItemModel() - atm.appendRow(root_item) - flights = QStandardItem("Flights") - root_item.appendRow(flights) + prj_item = AirborneProjectController(project) - flights.appendRow(flt_ctrl) + model = ProjectTreeModel() + model.appendRow(prj_item) - sys.excepthook = excepthook app = QApplication([]) - dlg = TreeTest(atm) + dlg = TreeTest(model) + + counter = count(2) + + def add_line(): + for fc in prj_item.flight_controllers: + fc.add_child(FlightLine(next(counter), next(counter), next(counter))) + - dlg.btn.clicked.connect(lambda: flt_ctrl.add_flight_line(FlightLine('yesterday', 'today', 2))) - # dlg.btn.clicked.connect(lambda: atm.update()) + dlg.btn.clicked.connect(add_line) + dlg.btn_export.clicked.connect(lambda: pprint(project.to_json(indent=4))) + dlg.btn_flight.clicked.connect(lambda: prj_item.add_flight(Flight('Flight %d' % next(counter)))) dlg.show() sys.exit(app.exec_()) diff --git a/examples/treeview.ui b/examples/treeview.ui index 4adc3ce..3f4d8c5 100644 --- a/examples/treeview.ui +++ b/examples/treeview.ui @@ -15,17 +15,53 @@ - + + + + 15 + 15 + + + + false + + + false + + - Click me + Add Line + + + + + + + Add Flight + + + + + + + Export JSON - + + + ProjectTreeView + QTreeView +
dgp.core.views.ProjectTreeView
+ + + + + diff --git a/tests/test_project_v2.py b/tests/test_project_v2.py index 57a0721..5269c8b 100644 --- a/tests/test_project_v2.py +++ b/tests/test_project_v2.py @@ -6,10 +6,9 @@ """ import json from pathlib import Path -from pprint import pprint import pytest -from dgp.core import flight, project +from core.models import project, flight @pytest.fixture() @@ -58,7 +57,7 @@ def test_flight_actions(make_flight, make_line): assert line1 in f1.flight_lines - f1.remove_flight_line(line1.uid) + f1.remove_child(line1.uid) assert line1 not in f1.flight_lines f1.add_flight_line(line1) @@ -94,20 +93,55 @@ def test_project_attr(make_flight): assert 2345 == prj.get_attr('_my_private_val') flt1 = make_flight('flight-1') - prj.add_flight(flt1) + prj.add_child(flt1) # assert flt1.parent == prj.uid +def test_project_get_child(make_flight): + prj = project.AirborneProject(name="Project-2", path=Path('.')) + f1 = make_flight('Flt-1') + f2 = make_flight('Flt-2') + f3 = make_flight('Flt-3') + prj.add_child(f1) + prj.add_child(f2) + prj.add_child(f3) + + assert f1 == prj.get_child(f1.uid) + assert f3 == prj.get_child(f3.uid) + assert not f2 == prj.get_child(f1.uid) + + +def test_project_remove_child(make_flight): + prj = project.AirborneProject(name="Project-3", path=Path('.')) + f1 = make_flight('Flt-1') + f2 = make_flight('Flt-2') + f3 = make_flight('Flt-3') + + prj.add_child(f1) + prj.add_child(f2) + + assert 2 == len(prj.flights) + assert f1 in prj.flights + assert f2 in prj.flights + assert f3 not in prj.flights + + assert not prj.remove_child(f3.uid) + assert prj.remove_child(f1.uid) + + assert f1 not in prj.flights + assert 1 == len(prj.flights) + + def test_project_serialize(make_flight, make_line): prj_path = Path('./prj-1') - prj = project.AirborneProject(name="Project-1", path=prj_path, + prj = project.AirborneProject(name="Project-3", path=prj_path, description="Test Project Serialization") f1 = make_flight('flt1') # type: flight.Flight line1 = make_line(0, 10) # type: # flight.FlightLine data1 = flight.DataFile('/%s' % f1.uid.base_uuid, 'df1', 'gravity') f1.add_flight_line(line1) - f1.add_data_file(data1) - prj.add_flight(f1) + f1.add_child(data1) + prj.add_child(f1) prj.set_attr('start_tie_value', 1234.90) prj.set_attr('end_tie_value', 987.123) @@ -115,23 +149,22 @@ def test_project_serialize(make_flight, make_line): encoded = prj.to_json(indent=4) decoded_dict = json.loads(encoded) - - pprint(decoded_dict) + # TODO: Test that all params are there def test_project_deserialize(make_flight, make_line): prj = project.AirborneProject(name="SerializeTest", path=Path('./prj1'), description="Test DeSerialize") - f1 = make_flight("Flt1") + f1 = make_flight("Flt1") # type: flight.Flight f2 = make_flight("Flt2") line1 = make_line(0, 10) line2 = make_line(11, 20) f1.add_flight_line(line1) f1.add_flight_line(line2) - prj.add_flight(f1) - prj.add_flight(f2) + prj.add_child(f1) + prj.add_child(f2) serialized = prj.to_json(indent=4) @@ -143,7 +176,14 @@ def test_project_deserialize(make_flight, make_line): assert "Flt1" in flt_names assert "Flt2" in flt_names - f1_reconstructed = prj_deserialized.flight(f1.uid) + f1_reconstructed = prj_deserialized.get_child(f1.uid) assert f1_reconstructed.name == f1.name + assert f1_reconstructed.uid == f1.uid + + assert f1.uid in [flt.uid for flt in prj_deserialized.flights] + assert 2 == len(prj_deserialized.flights) + prj_deserialized.remove_child(f1_reconstructed.uid) + assert 1 == len(prj_deserialized.flights) + assert f1.uid not in [flt.uid for flt in prj_deserialized.flights] From 4dd94a6debfa85f6f27313ce816b9348dacc0e1a Mon Sep 17 00:00:00 2001 From: Zachery Brady Date: Mon, 25 Jun 2018 09:41:43 -0600 Subject: [PATCH 111/236] Add functionality to Controllers/View Added functionality to Project/Meter/Flight controllers to generate context menu based on item. Added context specific actions to rename/delete items. Improved signal handling via Project Model. --- dgp/core/controllers/FlightController.py | 77 +++++++--- dgp/core/controllers/MeterController.py | 44 +++++- dgp/core/controllers/ProjectController.py | 167 ++++++++++++++-------- dgp/core/models/ProjectTreeModel.py | 30 +++- dgp/core/views/ProjectTreeView.py | 93 +++++++++--- 5 files changed, 310 insertions(+), 101 deletions(-) diff --git a/dgp/core/controllers/FlightController.py b/dgp/core/controllers/FlightController.py index 3296a72..e606ea6 100644 --- a/dgp/core/controllers/FlightController.py +++ b/dgp/core/controllers/FlightController.py @@ -1,12 +1,13 @@ # -*- coding: utf-8 -*- from typing import Optional, Any, Union -from PyQt5.QtGui import QStandardItem, QIcon +from PyQt5.QtCore import Qt +from PyQt5.QtGui import QStandardItem, QIcon, QStandardItemModel -from core.controllers.common import StandardProjectContainer +from core.controllers import common +from core.controllers.common import BaseProjectController, StandardProjectContainer from core.models.flight import Flight, FlightLine, DataFile -from gui.qtenum import QtDataRoles from lib.enums import DataTypes @@ -17,9 +18,10 @@ def __init__(self, label: str, data: Optional[Any] = None, icon: Optional[str] = super().__init__(QIcon(icon), label) else: super().__init__(label) + self.setText(label) self._data = data self._controller = controller # TODO: Is this used, or will it be? - self.setData(data, QtDataRoles.UserRole) + # self.setData(data, QtDataRoles.UserRole + 1) if data is not None: self.setToolTip(str(data.uid)) self.setEditable(False) @@ -27,7 +29,8 @@ def __init__(self, label: str, data: Optional[Any] = None, icon: Optional[str] = @property def menu_bindings(self): return [ - ('addAction', ('Delete <%s>' % self.text(), lambda: self.controller.remove_child(self._data, self.row()))) + ('addAction', ('Delete <%s>' % self.text(), lambda: self.controller.remove_child(self._data, self.row(), + True))) ] @property @@ -43,59 +46,99 @@ def properties(self): class FlightController(QStandardItem): + inherit_context = True + def __init__(self, flight: Flight, - controller: Optional[Union['ProjectController', 'AirborneController']]=None): + controller: Optional[BaseProjectController]=None): """Assemble the view/controller repr from the base flight object.""" super().__init__(flight.name) self.setEditable(False) self._flight = flight self._project_controller = controller + self._active = False self._flight_lines = StandardProjectContainer("Flight Lines") self._data_files = StandardProjectContainer("Data Files") self.appendRow(self._flight_lines) self.appendRow(self._data_files) - for line in self._flight.flight_lines: - self._flight_lines.appendRow(StandardFlightItem(str(line), line, ':/icons/plane_icon.png', controller=self)) + self._flight_lines_model = QStandardItemModel() + self._data_files_model = QStandardItemModel() + + for item in self._flight.flight_lines: + # Distinct Items must be created for the model and the flight_lines container + # As the parent property is reassigned on appendRow + self._flight_lines.appendRow(self._wrap_item(item)) + self._flight_lines_model.appendRow(self._wrap_item(item)) - for file in self._flight.data_files: - self._data_files.appendRow(StandardFlightItem(str(file), file, controller=self)) + for item in self._flight.data_files: + self._data_files.appendRow(self._wrap_item(item)) + self._data_files_model.appendRow(self._wrap_item(item)) self._bindings = [ - # ('addAction', (section_header,)), + ('addAction', ('Set Active', lambda: self.controller.set_active(self))), ('addAction', ('Import Gravity', lambda: self.controller.load_data_file(DataTypes.GRAVITY, self._flight))), ('addAction', ('Import Trajectory', lambda: self.controller.load_data_file(DataTypes.TRAJECTORY, self._flight))), ('addSeparator', ()), ('addAction', ('Delete <%s>' % self._flight.name, - lambda: self.controller.remove_child(self._flight, self.row()))) + lambda: self.controller.remove_child(self._flight, self.row(), True))), + ('addAction', ('Rename Flight', self.set_name)) ] @property - def controller(self): + def entity(self) -> Flight: + return self._flight + + @property + def controller(self) -> BaseProjectController: return self._project_controller @property def menu_bindings(self): return self._bindings + def is_active(self): + return self.controller.active_entity == self + def properties(self): print(self.__class__.__name__) + def _wrap_item(self, item: Union[FlightLine, DataFile]): + return StandardFlightItem(str(item), item, controller=self) + def add_child(self, child: Union[FlightLine, DataFile]): - item = StandardFlightItem(str(child), child, controller=self) self._flight.add_child(child) if isinstance(child, FlightLine): - self._flight_lines.appendRow(item) + self._flight_lines.appendRow(self._wrap_item(child)) + self._flight_lines_model.appendRow(self._wrap_item(child)) elif isinstance(child, DataFile): - self._data_files.appendRow(item) + self._data_files.appendRow(self._wrap_item(child)) + self._flight_lines_model.appendRow(self._wrap_item(child)) - def remove_child(self, child: Union[FlightLine, DataFile], row: int) -> None: + def remove_child(self, child: Union[FlightLine, DataFile], row: int, confirm: bool=True) -> None: + if confirm: + if not common.confirm_action("Confirm Deletion", "Are you sure you want to delete %s" % str(child)): + return self._flight.remove_child(child) if isinstance(child, FlightLine): self._flight_lines.removeRow(row) + self._flight_lines_model.removeRow(row) elif isinstance(child, DataFile): self._data_files.removeRow(row) + self._data_files_model.removeRow(row) + + def get_flight_line_model(self): + """Return a QStandardItemModel containing all Flight-Lines in this flight""" + return self._flight_lines_model + + def set_name(self): + name = common.get_input("Set Name", "Enter a new name:", self._flight.name) + if name: + self._flight.name = name + self.setData(name, role=Qt.DisplayRole) + + def __hash__(self): + return hash(self._flight.uid) diff --git a/dgp/core/controllers/MeterController.py b/dgp/core/controllers/MeterController.py index 357b4df..40532a6 100644 --- a/dgp/core/controllers/MeterController.py +++ b/dgp/core/controllers/MeterController.py @@ -1,11 +1,51 @@ -# -*- coding: uft-8 -*- +# -*- coding: utf-8 -*- +from typing import Optional + +from PyQt5.QtCore import Qt from PyQt5.QtGui import QStandardItem +from . import common +from core.models.meter import Gravimeter + + +class GravimeterController(QStandardItem): + def __init__(self, meter: Gravimeter, + controller: Optional[common.BaseProjectController]=None): + super().__init__(meter.name) + self.setEditable(False) + + self._meter = meter + self._project_controller = controller + + self._bindings = [ + ('addAction', ('Delete <%s>' % self._meter.name, + (lambda: self.controller.remove_child(self._meter, self.row(), True)))), + ('addAction', ('Rename', self.set_name)) + ] -class MeterController(QStandardItem): + @property + def entity(self) -> Gravimeter: + return self._meter + + @property + def controller(self) -> common.BaseProjectController: + return self._project_controller + + @property + def menu_bindings(self): + return self._bindings def add_child(self, child) -> None: pass def remove_child(self, child, row: int) -> None: pass + + def set_name(self): + name = common.get_input("Set Name", "Enter a new name:", self._meter.name) + if name: + self._meter.name = name + self.setData(name, role=Qt.DisplayRole) + + def __hash__(self): + return hash(self._meter.uid) diff --git a/dgp/core/controllers/ProjectController.py b/dgp/core/controllers/ProjectController.py index 4d314dc..b21aa1a 100644 --- a/dgp/core/controllers/ProjectController.py +++ b/dgp/core/controllers/ProjectController.py @@ -1,34 +1,32 @@ # -*- coding: utf-8 -*- -from typing import Optional, Union +import logging +import shlex +import sys +from weakref import WeakSet +from typing import Optional, Union, Generator -from PyQt5.QtGui import QStandardItem +from PyQt5.QtCore import Qt, QProcess +from PyQt5.QtGui import QStandardItem, QBrush, QColor +from core.controllers import common from core.controllers.FlightController import FlightController -from core.controllers.common import StandardProjectContainer +from core.controllers.MeterController import GravimeterController +from core.controllers.common import StandardProjectContainer, BaseProjectController, confirm_action from core.models.flight import Flight, DataFile from core.models.meter import Gravimeter -from core.oid import OID from core.models.project import GravityProject, AirborneProject +from core.oid import OID from gui.dialogs import AdvancedImportDialog from lib.enums import DataTypes +BASE_COLOR = QBrush(QColor('white')) +ACTIVE_COLOR = QBrush(QColor(108, 255, 63)) -class ProjectController(QStandardItem): - def __init__(self, project: GravityProject): - super().__init__(project.name) - self._project = project - - @property - def project(self) -> GravityProject: - return self._project - - def properties(self): - print(self.__class__.__name__) - -class AirborneProjectController(ProjectController): +class AirborneProjectController(BaseProjectController): def __init__(self, project: AirborneProject): super().__init__(project) + self.log = logging.getLogger(__name__) self.flights = StandardProjectContainer("Flights") self.appendRow(self.flights) @@ -36,57 +34,106 @@ def __init__(self, project: AirborneProject): self.meters = StandardProjectContainer("Gravimeters") self.appendRow(self.meters) - self._controllers = {} + self._flight_ctrl = WeakSet() + self._meter_ctrl = WeakSet() + self._active = None for flight in self.project.flights: controller = FlightController(flight, controller=self) - self._controllers[flight.uid] = controller + self._flight_ctrl.add(controller) self.flights.appendRow(controller) for meter in self.project.gravimeters: - pass + controller = GravimeterController(meter, controller=self) + self._meter_ctrl.add(controller) + self.meters.appendRow(controller) + + self._bindings = [ + ('addAction', ('Set Project Name', self.set_name)), + ('addAction', ('Show in Explorer', self.show_in_explorer)) + ] def properties(self): print(self.__class__.__name__) @property - def project(self) -> Union[GravityProject, AirborneProject]: - return super().project + def flight_ctrls(self) -> Generator[FlightController, None, None]: + for ctrl in self._flight_ctrl: + yield ctrl @property - def flight_controllers(self): - return [fc for fc in self._controllers.values() if isinstance(fc, FlightController)] + def meter_ctrls(self) -> Generator[GravimeterController, None, None]: + for ctrl in self._meter_ctrl: + yield ctrl @property - def context_menu(self): - return - - def add_flight(self, flight: Flight): - self.project.add_child(flight) - controller = FlightController(flight, controller=self) - self._controllers[flight.uid] = controller - self.flights.appendRow(controller) + def project(self) -> Union[GravityProject, AirborneProject]: + return super().project def add_child(self, child: Union[Flight, Gravimeter]): self.project.add_child(child) if isinstance(child, Flight): - self.flights.appendRow(child) + controller = FlightController(child, controller=self) + self._flight_ctrl.add(controller) + self.flights.appendRow(controller) elif isinstance(child, Gravimeter): - self.meters.appendRow(child) + controller = GravimeterController(child, controller=self) + self._meter_ctrl.add(controller) + self.meters.appendRow(controller) + + def get_child_controller(self, child: Union[Flight, Gravimeter]): + ctrl_map = {Flight: self.flight_ctrls, Gravimeter: self.meter_ctrls} + ctrls = ctrl_map.get(type(child), None) + if ctrls is None: + return None + + for ctrl in ctrls: + if ctrl.entity.uid == child.uid: + return ctrl + + def remove_child(self, child: Union[Flight, Gravimeter], row: int, confirm=True): + if confirm: + if not confirm_action("Confirm Deletion", "Are you sure you want to delete %s" + % child.name): + return - def remove_child(self, child: Union[Flight, Gravimeter], row: int): self.project.remove_child(child.uid) if isinstance(child, Flight): self.flights.removeRow(row) elif isinstance(child, Gravimeter): self.meters.removeRow(row) - del self._controllers[child.uid] - - def get_controller(self, oid: OID): - return self._controllers[oid] - - def load_data_file(self, _type: DataTypes, flight: Optional[Flight]=None, browse=True): + def set_active(self, entity: FlightController): + if isinstance(entity, FlightController): + self._active = entity + + for ctrl in self._flight_ctrl: # type: QStandardItem + ctrl.setBackground(BASE_COLOR) + entity.setBackground(ACTIVE_COLOR) + self.model().flight_changed.emit(entity) + + def set_name(self): + new_name = common.get_input("Set Project Name", "Enter a Project Name", self.project.name) + if new_name: + self.project.name = new_name + self.setData(new_name, Qt.DisplayRole) + + def show_in_explorer(self): + # TODO Linux KDE/Gnome file browser launch + ppath = str(self.project.path.resolve()) + if sys.platform == 'darwin': + script = 'oascript' + args = '-e tell application \"Finder\" -e activate -e select POSIX file \"' + ppath + '\" -e end tell' + elif sys.platform == 'win32': + script = 'explorer' + args = shlex.quote(ppath) + else: + self.log.warning("Platform %s is not supported for this action.", sys.platform) + return + + QProcess.startDetached(script, shlex.split(args)) + + def load_data_file(self, _type: DataTypes, flight: Optional[Flight] = None, browse=True): dialog = AdvancedImportDialog(self.project, flight, _type.value) if browse: dialog.browse() @@ -94,20 +141,26 @@ def load_data_file(self, _type: DataTypes, flight: Optional[Flight]=None, browse if dialog.exec_(): print("Loading file") - controller = self._controllers[dialog.flight.uid] - controller.add_child(DataFile('%s/%s/' % (flight.uid.base_uuid, _type.value.lower()), 'NoLabel', - _type.value.lower(), dialog.path)) - - # if _type == DataTypes.GRAVITY: - # loader = LoaderThread.from_gravity(self.parent(), dialog.path) - # else: - # loader = LoaderThread.from_gps(None, dialog.path, 'hms') - # - # loader.result.connect(lambda: print("Finished importing stuff")) - # loader.start() - - def getContextMenuBindings(self): - return [ - ('addSeparator', ()) - ] + controller = self.get_child_controller(dialog.flight) + print("Got controller: " + str(controller)) + print("Controller flight: " + controller.entity.name) + # controller = self.flight_ctrls[dialog.flight.uid] + # controller.add_child(DataFile('%s/%s/' % (flight.uid.base_uuid, _type.value.lower()), 'NoLabel', + # _type.value.lower(), dialog.path)) + + # TODO: Actually load the file (should we use a worker queue for loading?) + + @property + def menu_bindings(self): + return self._bindings + + +class MarineProjectController(BaseProjectController): + def set_active(self, entity): + pass + + def add_child(self, child): + pass + def remove_child(self, child, row: int, confirm: bool = True): + pass diff --git a/dgp/core/models/ProjectTreeModel.py b/dgp/core/models/ProjectTreeModel.py index 566f87d..08118bf 100644 --- a/dgp/core/models/ProjectTreeModel.py +++ b/dgp/core/models/ProjectTreeModel.py @@ -1,13 +1,39 @@ # -*- coding: utf-8 -*- from typing import Optional -from PyQt5.QtCore import QObject +from PyQt5.QtCore import QObject, QModelIndex, pyqtSignal, pyqtSlot from PyQt5.QtGui import QStandardItemModel +from core.controllers.FlightController import FlightController +from core.controllers.common import BaseProjectController + __all__ = ['ProjectTreeModel'] class ProjectTreeModel(QStandardItemModel): - def __init__(self, parent: Optional[QObject]=None): + """Extension of QStandardItemModel which handles Project/Model specific + events and defines signals for domain specific actions. + + All signals/events should be connected via the model vs the View itself. + """ + flight_changed = pyqtSignal(FlightController) + + def __init__(self, root: BaseProjectController, parent: Optional[QObject]=None): super().__init__(parent) + self._root = root + self.appendRow(self._root) + + @property + def root_controller(self) -> BaseProjectController: + return self._root + + @pyqtSlot(QModelIndex, name='on_click') + def on_click(self, index: QModelIndex): + pass + @pyqtSlot(QModelIndex, name='on_double_click') + def on_double_click(self, index: QModelIndex): + print("Double click received in model") + item = self.itemFromIndex(index) + if isinstance(item, FlightController): + self.root_controller.set_active(item) diff --git a/dgp/core/views/ProjectTreeView.py b/dgp/core/views/ProjectTreeView.py index 0e7736a..3cbd9b1 100644 --- a/dgp/core/views/ProjectTreeView.py +++ b/dgp/core/views/ProjectTreeView.py @@ -2,13 +2,13 @@ from typing import Optional, Tuple, Any, List from PyQt5 import QtCore -from PyQt5.QtCore import QObject -from PyQt5.QtGui import QContextMenuEvent -from PyQt5.QtWidgets import QTreeView, QMenu, QAction +from PyQt5.QtCore import QObject, QModelIndex, pyqtSlot, pyqtBoundSignal +from PyQt5.QtGui import QContextMenuEvent, QStandardItem +from PyQt5.QtWidgets import QTreeView, QMenu - -# from core.controllers.ContextMixin import ContextEnabled -from core.controllers.ProjectController import ProjectController +from core.controllers.FlightController import FlightController +from core.controllers.ProjectController import BaseProjectController +from core.models.ProjectTreeModel import ProjectTreeModel class ProjectTreeView(QTreeView): @@ -18,41 +18,88 @@ def __init__(self, parent: Optional[QObject]=None): self.setMinimumSize(QtCore.QSize(0, 300)) self.setAlternatingRowColors(False) self.setAutoExpandDelay(1) - self.setExpandsOnDoubleClick(True) + self.setExpandsOnDoubleClick(False) self.setRootIsDecorated(False) self.setUniformRowHeights(True) self.setHeaderHidden(True) self.setObjectName('project_tree_view') self.setContextMenuPolicy(QtCore.Qt.DefaultContextMenu) - self._menu = QMenu(self) self._action_refs = [] - def _build_menu(self, bindings: List[Tuple[str, Tuple[Any]]]): + def _clear_signal(self, signal: pyqtBoundSignal): + while True: + try: + signal.disconnect() + except TypeError: + break + + def setModel(self, model: ProjectTreeModel): + """Set the View Model and connect signals to its slots""" + self._clear_signal(self.clicked) + self._clear_signal(self.doubleClicked) + + super().setModel(model) + self.clicked.connect(self.model().on_click) + self.doubleClicked.connect(self._on_double_click) + self.doubleClicked.connect(self.model().on_double_click) + + @pyqtSlot(QModelIndex) + def _on_double_click(self, index: QModelIndex): + """Selectively expand/collapse an item depending on its active state""" + item = self.model().itemFromIndex(index) + if isinstance(item, FlightController): + if item.is_active(): + self.setExpanded(index, not self.isExpanded(index)) + else: + self.setExpanded(index, True) + else: + self.setExpanded(index, not self.isExpanded(index)) + + def _build_menu(self, menu: QMenu, bindings: List[Tuple[str, Tuple[Any]]]): self._action_refs.clear() for attr, params in bindings: if hasattr(QMenu, attr): - res = getattr(self._menu, attr)(*params) + res = getattr(menu, attr)(*params) self._action_refs.append(res) - def _get_item_attr(self, item, attr): - return getattr(item, attr, lambda *x, **y: None) - def contextMenuEvent(self, event: QContextMenuEvent, *args, **kwargs): - event_index = self.indexAt(event.pos()) - event_item = self.model().itemFromIndex(event_index) + index = self.indexAt(event.pos()) + item = self.model().itemFromIndex(index) # type: QStandardItem + expanded = self.isExpanded(index) - self._menu.clear() - bindings = getattr(event_item, 'menu_bindings', [])[:] # type: List + menu = QMenu(self) + bindings = getattr(item, 'menu_bindings', [])[:] # type: List - if isinstance(event_item, ProjectController) or issubclass(event_item.__class__, ProjectController): + # Experimental Menu Inheritance/Extend functionality + # if hasattr(event_item, 'inherit_context') and event_item.inherit_context: + # print("Inheriting parent menu(s)") + # ancestors = [] + # parent = event_item.parent() + # while parent is not None: + # ancestors.append(parent) + # if not hasattr(parent, 'inherit_context'): + # break + # parent = parent.parent() + # print(ancestors) + # + # ancestor_bindings = [] + # for item in reversed(ancestors): + # if hasattr(item, 'menu_bindings'): + # ancestor_bindings.extend(item.menu_bindings) + # pprint(ancestor_bindings) + # bindings.extend(ancestor_bindings) + + if isinstance(item, BaseProjectController) or issubclass(item.__class__, BaseProjectController): bindings.insert(0, ('addAction', ("Expand All", self.expandAll))) - expanded = self.isExpanded(event_index) bindings.append(('addAction', ("Expand" if not expanded else "Collapse", - lambda: self.setExpanded(event_index, not expanded)))) - bindings.append(('addAction', ("Properties", self._get_item_attr(event_item, 'properties')))) + lambda: self.setExpanded(index, not expanded)))) + bindings.append(('addAction', ("Properties", self._get_item_attr(item, 'properties')))) - self._build_menu(bindings) - self._menu.exec_(event.globalPos()) + self._build_menu(menu, bindings) + menu.exec_(event.globalPos()) event.accept() + @staticmethod + def _get_item_attr(item, attr): + return getattr(item, attr, lambda *x, **y: None) From 803f98498abac4f1a31ff7bacdc0ca7419479c95 Mon Sep 17 00:00:00 2001 From: Zachery Brady Date: Mon, 25 Jun 2018 09:46:17 -0600 Subject: [PATCH 112/236] Improve JSON serialization/de-serialization in new project models. Better JSON de-serialization method to dynamically construct classes based on _type parameter. Various properties added to flight/meter/project base models. Models now support use of __slots__ to strictly define expected fields, and save memory/speed improvement. --- dgp/core/controllers/common.py | 52 +++++++++- dgp/core/models/flight.py | 104 +++++++++----------- dgp/core/models/meter.py | 18 ++-- dgp/core/models/project.py | 129 ++++++++++++++----------- examples/treemodel_integration_test.py | 37 +++++-- examples/treeview.ui | 35 ++++--- tests/test_project_v2.py | 59 +++++++---- 7 files changed, 276 insertions(+), 158 deletions(-) diff --git a/dgp/core/controllers/common.py b/dgp/core/controllers/common.py index 8e2b522..d27d27b 100644 --- a/dgp/core/controllers/common.py +++ b/dgp/core/controllers/common.py @@ -1,12 +1,62 @@ # -*- coding: utf-8 -*- from PyQt5.QtGui import QStandardItem +from PyQt5.QtWidgets import QMessageBox, QWidget, QInputDialog + +from core.models.project import GravityProject + + +class BaseProjectController(QStandardItem): + def __init__(self, project: GravityProject): + super().__init__(project.name) + self._project = project + self._active = None + + @property + def project(self) -> GravityProject: + return self._project + + @property + def active_entity(self): + return self._active + + def set_active(self, entity): + raise NotImplementedError + + def properties(self): + print(self.__class__.__name__) + + def add_child(self, child): + raise NotImplementedError + + def remove_child(self, child, row: int, confirm: bool=True): + raise NotImplementedError class StandardProjectContainer(QStandardItem): - def __init__(self, label: str, icon: str=None, **kwargs): + inherit_context = False + + def __init__(self, label: str, icon: str=None, inherit=False, **kwargs): super().__init__(label) + self.inherit_context = inherit self.setEditable(False) self._attributes = kwargs def properties(self): print(self.__class__.__name__) + + +def confirm_action(title: str, message: str, parent: QWidget=None): + dlg = QMessageBox(QMessageBox.Question, title, message, + QMessageBox.Yes | QMessageBox.No, parent=parent) + dlg.setDefaultButton(QMessageBox.No) + dlg.exec_() + return dlg.result() == QMessageBox.Yes + + +def get_input(title: str, label: str, text: str, parent: QWidget=None): + new_text, result = QInputDialog.getText(parent, title, label, text=text) + if result: + return new_text + return False + + diff --git a/dgp/core/models/flight.py b/dgp/core/models/flight.py index 5fc7fb2..e60e7f3 100644 --- a/dgp/core/models/flight.py +++ b/dgp/core/models/flight.py @@ -2,13 +2,15 @@ from pathlib import Path from typing import List, Optional, Any, Dict, Union -from core.models.meter import Gravimeter -from core.oid import OID +from .meter import Gravimeter +from ..oid import OID class FlightLine: - def __init__(self, start: float, stop: float, sequence: int, uid: Optional[str]=None, - **kwargs): + __slots__ = '_uid', '_start', '_stop', '_sequence' + + def __init__(self, start: float, stop: float, sequence: int, + uid: Optional[str]=None): self._uid = OID(self, _uid=uid) self._start = start @@ -44,6 +46,8 @@ def __str__(self): class DataFile: + __slots__ = '_uid', '_path', '_label', '_group', '_source_path', '_column_format' + def __init__(self, hdfpath: str, label: str, group: str, source_path: Optional[Path]=None, uid: Optional[str]=None, **kwargs): self._uid = OID(self, _uid=uid) @@ -77,19 +81,24 @@ class Flight: This class is iterable, yielding the flightlines named tuple objects from its lines dictionary """ + __slots__ = '_uid', '_name', '_flight_lines', '_data_files', '_meters' def __init__(self, name: str, uid: Optional[str]=None, **kwargs): self._uid = OID(self, tag=name, _uid=uid) self._name = name - self._flight_lines = [] # type: List[FlightLine] - self._data_files = [] # type: List[DataFile] - self._meters = [] # type: List[OID] + self._flight_lines = kwargs.get('flight_lines', []) # type: List[FlightLine] + self._data_files = kwargs.get('data_files', []) # type: List[DataFile] + self._meters = kwargs.get('meters', []) # type: List[OID] @property def name(self) -> str: return self._name + @name.setter + def name(self, value: str) -> None: + self._name = value + @property def uid(self) -> OID: return self._uid @@ -98,32 +107,10 @@ def uid(self) -> OID: def data_files(self) -> List[DataFile]: return self._data_files - def remove_data_file(self, file_id: OID) -> None: - data_ids = [file.uid for file in self._data_files] - index = data_ids.index(file_id) - self._data_files.pop(index) - - def data_file_count(self) -> int: - return len(self._data_files) - @property def flight_lines(self) -> List[FlightLine]: return self._flight_lines - def add_flight_line(self, line: FlightLine) -> None: - if not isinstance(line, FlightLine): - raise ValueError("Invalid input type, expected: %s" % str(type(FlightLine))) - # line.parent = self.uid - self._flight_lines.append(line) - - def remove_flight_line(self, line_id: OID) -> None: - line_ids = [line.uid for line in self._flight_lines] - index = line_ids.index(line_id) - self._flight_lines.pop(index) - - def flight_line_count(self) -> int: - return len(self._flight_lines) - def add_child(self, child: Union[FlightLine, DataFile, Gravimeter]) -> None: if isinstance(child, FlightLine): self._flight_lines.append(child) @@ -131,6 +118,8 @@ def add_child(self, child: Union[FlightLine, DataFile, Gravimeter]) -> None: self._data_files.append(child) elif isinstance(child, Gravimeter): raise NotImplementedError("Meter Config Children not yet implemented") + else: + raise ValueError("Invalid child type supplied: <%s>" % str(type(child))) def remove_child(self, child: Union[FlightLine, DataFile, OID]) -> bool: if isinstance(child, OID): @@ -150,32 +139,31 @@ def __str__(self) -> str: def __repr__(self) -> str: return '' % (self.name, self.uid) - @classmethod - def from_dict(cls, mapping: Dict[str, Any]) -> 'Flight': - assert mapping.pop('_type') == cls.__name__ - flt_lines = mapping.pop('_flight_lines') - flt_meters = mapping.pop('_meters') - flt_data = mapping.pop('_data_files') - - params = {} - for key, value in mapping.items(): - param_key = key[1:] if key.startswith('_') else key - params[param_key] = value - - klass = cls(**params) - - for line in flt_lines: - assert 'FlightLine' == line.pop('_type') - flt_line = FlightLine(**{key[1:]: value for key, value in line.items()}) - klass.add_child(flt_line) - - for file in flt_data: - data_file = DataFile(**file) - klass.add_child(data_file) - - for meter in flt_meters: - # Should meters in a flight just be a UID reference to global meter configs? - meter_cfg = Gravimeter(**meter) - klass.add_child(meter_cfg) - - return klass + # @classmethod + # def from_dict(cls, mapping: Dict[str, Any]) -> 'Flight': + # # assert mapping.pop('_type') == cls.__name__ + # flt_lines = mapping.pop('_flight_lines') + # flt_meters = mapping.pop('_meters') + # flt_data = mapping.pop('_data_files') + # + # params = {} + # for key, value in mapping.items(): + # param_key = key[1:] if key.startswith('_') else key + # params[param_key] = value + # + # klass = cls(**params) + # for line in flt_lines: + # # assert 'FlightLine' == line.pop('_type') + # flt_line = FlightLine(**{key[1:]: value for key, value in line.items()}) + # klass.add_child(flt_line) + # + # for file in flt_data: + # data_file = DataFile(**file) + # klass.add_child(data_file) + # + # for meter in flt_meters: + # # Should meters in a flight just be a UID reference to global meter configs? + # meter_cfg = Gravimeter(**meter) + # klass.add_child(meter_cfg) + # + # return klass diff --git a/dgp/core/models/meter.py b/dgp/core/models/meter.py index 9f48b06..6127cc1 100644 --- a/dgp/core/models/meter.py +++ b/dgp/core/models/meter.py @@ -5,19 +5,25 @@ """ from typing import Optional -from core.oid import OID +from ..oid import OID class Gravimeter: - def __init__(self, uid: Optional[str]=None, **kwargs): + def __init__(self, name: str, uid: Optional[str]=None, **kwargs): self._uid = OID(self, _uid=uid) self._type = "AT1A" - self._attributes = {} + self._name = name + self._attributes = kwargs.get('attributes', {}) @property def uid(self) -> OID: return self._uid - @classmethod - def from_dict(cls, map): - pass + @property + def name(self) -> str: + return self._name + + @name.setter + def name(self, value: str) -> None: + # ToDo: Regex validation? + self._name = value diff --git a/dgp/core/models/project.py b/dgp/core/models/project.py index bec37c3..7b280b8 100644 --- a/dgp/core/models/project.py +++ b/dgp/core/models/project.py @@ -10,38 +10,44 @@ from pathlib import Path from typing import Optional, List, Any, Dict, Union -from core.oid import OID -from .flight import Flight +from ..oid import OID +from .flight import Flight, FlightLine, DataFile from .meter import Gravimeter +klass_map = {'Flight': Flight, 'FlightLine': FlightLine, 'DataFile': DataFile, + 'Gravimeter': Gravimeter} + class ProjectEncoder(json.JSONEncoder): - def default(self, o: Any) -> dict: - r_dict = {'_type': o.__class__.__name__} - for key, value in o.__dict__.items(): - if isinstance(value, OID) or key == '_uid': - r_dict[key] = value.base_uuid - elif isinstance(value, Path): - r_dict[key] = str(value) - elif isinstance(value, datetime): - r_dict[key] = value.timestamp() - else: - r_dict[key] = value - return r_dict + def default(self, o: Any): + if isinstance(o, (AirborneProject, *klass_map.values())): + keys = o.__slots__ if hasattr(o, '__slots__') else o.__dict__.keys() + attrs = {key.lstrip('_'): getattr(o, key) for key in keys} + attrs['_type'] = o.__class__.__name__ + return attrs + if isinstance(o, OID): + return o.base_uuid + if isinstance(o, Path): + return str(o) + if isinstance(o, datetime): + return o.timestamp() + + return super().default(o) class GravityProject: - def __init__(self, name: str, path: Union[Path, str], description: Optional[str]=None, - create_date: Optional[float]=datetime.utcnow().timestamp(), uid: Optional[str]=None, **kwargs): - self._uid = OID(self, uid) + def __init__(self, name: str, path: Union[Path, str], description: Optional[str] = None, + create_date: Optional[float] = datetime.utcnow().timestamp(), uid: Optional[str] = None, **kwargs): + self._uid = OID(self, tag=name, _uid=uid) self._name = name self._path = path self._description = description self._create_date = datetime.fromtimestamp(create_date) - self._modify_date = datetime.utcnow() + self._modify_date = datetime.fromtimestamp(kwargs.get('modify_date', + datetime.utcnow().timestamp())) - self._gravimeters = [] # type: List[Gravimeter] - self._attributes = {} # type: Dict[str, Any] + self._gravimeters = kwargs.get('gravimeters', []) # type: List[Gravimeter] + self._attributes = kwargs.get('attributes', {}) # type: Dict[str, Any] @property def uid(self) -> OID: @@ -51,6 +57,11 @@ def uid(self) -> OID: def name(self) -> str: return self._name + @name.setter + def name(self, value: str) -> None: + self._name = value.strip() + self._modify() + @property def path(self) -> Path: return Path(self._path) @@ -59,6 +70,11 @@ def path(self) -> Path: def description(self) -> str: return self._description + @description.setter + def description(self, value: str): + self._description = value.strip() + self._modify() + @property def creation_time(self) -> datetime: return self._create_date @@ -102,7 +118,11 @@ def get_attr(self, key: str) -> Union[str, int, float, bool]: def __getattr__(self, item): # Intercept attribute calls that don't exist - proxy to _attributes - return self._attributes[item] + try: + return self._attributes[item] + except KeyError: + # hasattr/getattr expect an AttributeError if attribute doesn't exist + raise AttributeError def __getitem__(self, item): return self._attributes[item] @@ -113,9 +133,39 @@ def _modify(self): self._modify_date = datetime.utcnow() # Serialization/De-Serialization methods + @classmethod + def object_hook(cls, json_o: Dict): + """Object Hook in json.load will iterate upwards from the deepest + nested JSON object (dictionary), calling this hook on each, then passing + the result up to the next level object. + Thus we can re-assemble the entire + Project hierarchy given that all classes can be created via their __init__ + methods (i.e. must accept passing child objects through a parameter) + + The _type attribute is expected (and injected during serialization), for any + custom objects which should be processed by the project_hook + + The type of the current project class (or sub-class) is injected into + the class map which allows for this object hook to be utilized by any + inheritor without modification. + """ + if '_type' in json_o: + _type = json_o.pop('_type') + if _type == cls.__name__: + klass = cls + else: + klass = klass_map.get(_type, None) + if klass is None: + raise AttributeError("Unexpected class %s in JSON data. Class is not defined" + " in class map." % _type) + params = {key.lstrip('_'): value for key, value in json_o.items()} + return klass(**params) + else: + return json_o + @classmethod def from_json(cls, json_str: str) -> 'GravityProject': - raise NotImplementedError("from_json must be implemented in base class.") + return json.loads(json_str, object_hook=cls.object_hook) def to_json(self, indent=None) -> str: return json.dumps(self, cls=ProjectEncoder, indent=indent) @@ -124,7 +174,7 @@ def to_json(self, indent=None) -> str: class AirborneProject(GravityProject): def __init__(self, **kwargs): super().__init__(**kwargs) - self._flights = [] + self._flights = kwargs.get('flights', []) @property def flights(self) -> List[Flight]: @@ -137,7 +187,7 @@ def add_child(self, child): else: super().add_child(child) - def get_child(self, child_id: OID): + def get_child(self, child_id: OID) -> Union[Flight, Gravimeter]: try: return [flt for flt in self._flights if flt.uid == child_id][0] except IndexError: @@ -150,35 +200,6 @@ def remove_child(self, child_id: OID) -> bool: else: return super().remove_child(child_id) - @classmethod - def from_json(cls, json_str: str) -> 'AirborneProject': - decoded = json.loads(json_str) - - flights = decoded.pop('_flights') - meters = decoded.pop('_gravimeters') - attrs = decoded.pop('_attributes') - - params = {} - for key, value in decoded.items(): - param_key = key[1:] # strip leading underscore - params[param_key] = value - - klass = cls(**params) - for key, value in attrs.items(): - klass.set_attr(key, value) - - for flight in flights: - flt = Flight.from_dict(flight) - klass.add_child(flt) - - for meter in meters: - mtr = Gravimeter.from_dict(meter) - klass.add_child(mtr) - - return klass - class MarineProject(GravityProject): - @classmethod - def from_json(cls, json_str: str) -> 'MarineProject': - pass + pass diff --git a/examples/treemodel_integration_test.py b/examples/treemodel_integration_test.py index d487b5d..ad3ec1e 100644 --- a/examples/treemodel_integration_test.py +++ b/examples/treemodel_integration_test.py @@ -1,4 +1,4 @@ -# coding: utf-8 +# -*- coding: utf-8 -*- import sys import traceback @@ -7,16 +7,19 @@ from pprint import pprint from PyQt5 import QtCore -from PyQt5.QtGui import QStandardItemModel +from core.controllers.FlightController import FlightController, StandardFlightItem from core.controllers.ProjectController import AirborneProjectController from core.models.ProjectTreeModel import ProjectTreeModel from core.models.flight import Flight, FlightLine, DataFile +from core.models.meter import Gravimeter from core.models.project import AirborneProject from PyQt5.uic import loadUiType from PyQt5.QtWidgets import QDialog, QApplication +from core.views import ProjectTreeView + tree_dialog, _ = loadUiType('treeview.ui') @@ -32,9 +35,21 @@ class TreeTest(QDialog, tree_dialog): def __init__(self, model): super().__init__(parent=None) self.setupUi(self) + + self.treeView: ProjectTreeView + self.treeView.setModel(model) + model.flight_changed.connect(self._flight_changed) self.treeView.expandAll() + self._cmodel = None + + def _flight_changed(self, flight: FlightController): + print("Setting fl model") + self._cmodel = flight.get_flight_line_model() + print(self._cmodel) + self.cb_flight_lines.setModel(self._cmodel) + def excepthook(type_, value, traceback_): """This allows IDE to properly display unhandled exceptions which are @@ -53,27 +68,33 @@ def excepthook(type_, value, traceback_): project = AirborneProject(name="Test Project", path=Path('.')) flt = Flight('Test Flight') - flt.add_flight_line(FlightLine(23, 66, 1)) + flt.add_child(FlightLine(23, 66, 1)) flt.add_child(DataFile('/flights/gravity/1234', 'Test File', 'gravity')) + at1a6 = Gravimeter('AT1A-6') + at1a10 = Gravimeter('AT1A-10') + + project.add_child(at1a6) project.add_child(flt) - prj_item = AirborneProjectController(project) + prj_ctrl = AirborneProjectController(project) - model = ProjectTreeModel() - model.appendRow(prj_item) + model = ProjectTreeModel(prj_ctrl) app = QApplication([]) + # app = QGuiApplication(sys.argv) + dlg = TreeTest(model) counter = count(2) def add_line(): - for fc in prj_item.flight_controllers: + for fc in prj_ctrl.flight_ctrls: fc.add_child(FlightLine(next(counter), next(counter), next(counter))) dlg.btn.clicked.connect(add_line) dlg.btn_export.clicked.connect(lambda: pprint(project.to_json(indent=4))) - dlg.btn_flight.clicked.connect(lambda: prj_item.add_flight(Flight('Flight %d' % next(counter)))) + dlg.btn_flight.clicked.connect(lambda: prj_ctrl.add_child(Flight('Flight %d' % next(counter)))) dlg.show() + prj_ctrl.add_child(at1a10) sys.exit(app.exec_()) diff --git a/examples/treeview.ui b/examples/treeview.ui index 3f4d8c5..f7dff63 100644 --- a/examples/treeview.ui +++ b/examples/treeview.ui @@ -15,20 +15,27 @@ - - - - 15 - 15 - - - - false - - - false - - + + + + + + 15 + 15 + + + + false + + + false + + + + + + + diff --git a/tests/test_project_v2.py b/tests/test_project_v2.py index 5269c8b..e19196c 100644 --- a/tests/test_project_v2.py +++ b/tests/test_project_v2.py @@ -5,10 +5,13 @@ serialization/de-serialization """ import json +import time from pathlib import Path +from pprint import pprint import pytest from core.models import project, flight +from core.models.meter import Gravimeter @pytest.fixture() @@ -46,31 +49,32 @@ def test_flight_actions(make_flight, make_line): assert not line1.sequence == line2.sequence - assert 0 == f1.flight_line_count() - assert 0 == f1.data_file_count() + assert 0 == len(f1.flight_lines) + assert 0 == len(f2.flight_lines) - f1.add_flight_line(line1) - assert 1 == f1.flight_line_count() + f1.add_child(line1) + assert 1 == len(f1.flight_lines) with pytest.raises(ValueError): - f1.add_flight_line('not a flight line') + f1.add_child('not a flight line') assert line1 in f1.flight_lines f1.remove_child(line1.uid) assert line1 not in f1.flight_lines - f1.add_flight_line(line1) - f1.add_flight_line(line2) + f1.add_child(line1) + f1.add_child(line2) assert line1 in f1.flight_lines assert line2 in f1.flight_lines - assert 2 == f1.flight_line_count() + assert 2 == len(f1.flight_lines) assert '' % f1.uid == repr(f1) def test_project_actions(): + # TODO: test add/get/remove child pass @@ -139,7 +143,7 @@ def test_project_serialize(make_flight, make_line): f1 = make_flight('flt1') # type: flight.Flight line1 = make_line(0, 10) # type: # flight.FlightLine data1 = flight.DataFile('/%s' % f1.uid.base_uuid, 'df1', 'gravity') - f1.add_flight_line(line1) + f1.add_child(line1) f1.add_child(data1) prj.add_child(f1) @@ -153,37 +157,58 @@ def test_project_serialize(make_flight, make_line): def test_project_deserialize(make_flight, make_line): + attrs = { + 'attr1': 12345, + 'attr2': 192.201, + 'attr3': False, + 'attr4': "Notes on project" + + } prj = project.AirborneProject(name="SerializeTest", path=Path('./prj1'), description="Test DeSerialize") + for key, value in attrs.items(): + prj.set_attr(key, value) + + assert attrs == prj._attributes + f1 = make_flight("Flt1") # type: flight.Flight f2 = make_flight("Flt2") - line1 = make_line(0, 10) + line1 = make_line(0, 10) # type: flight.FlightLine line2 = make_line(11, 20) - f1.add_flight_line(line1) - f1.add_flight_line(line2) + f1.add_child(line1) + f1.add_child(line2) prj.add_child(f1) prj.add_child(f2) - serialized = prj.to_json(indent=4) + mtr = Gravimeter('AT1M-X') + prj.add_child(mtr) + serialized = prj.to_json(indent=4) + time.sleep(0.25) # Fuzz for modification date prj_deserialized = project.AirborneProject.from_json(serialized) - flt_names = [flt.name for flt in prj_deserialized.flights] + re_serialized = prj_deserialized.to_json(indent=4) + assert serialized == re_serialized + assert attrs == prj_deserialized._attributes assert prj.creation_time == prj_deserialized.creation_time + flt_names = [flt.name for flt in prj_deserialized.flights] assert "Flt1" in flt_names assert "Flt2" in flt_names f1_reconstructed = prj_deserialized.get_child(f1.uid) - assert f1_reconstructed.name == f1.name - assert f1_reconstructed.uid == f1.uid - assert f1.uid in [flt.uid for flt in prj_deserialized.flights] assert 2 == len(prj_deserialized.flights) prj_deserialized.remove_child(f1_reconstructed.uid) assert 1 == len(prj_deserialized.flights) assert f1.uid not in [flt.uid for flt in prj_deserialized.flights] + assert f1_reconstructed.name == f1.name + assert f1_reconstructed.uid == f1.uid + + assert f2.uid in [flt.uid for flt in prj_deserialized.flights] + assert line1.uid in [line.uid for line in f1_reconstructed.flight_lines] + assert line2.uid in [line.uid for line in f1_reconstructed.flight_lines] From 902f7cc5b4c0936e5cb6be5f17159b0a4205bafa Mon Sep 17 00:00:00 2001 From: Zachery Brady Date: Mon, 25 Jun 2018 18:16:28 -0600 Subject: [PATCH 113/236] Delete old project code and unneeded tests. Removal of old project/control code to clean up for switch to new project models/controllers. --- dgp/core/controllers/common.py | 62 ---- dgp/gui/qtenum.py | 52 --- dgp/gui/views.py | 105 ------ dgp/lib/datastore.py | 248 -------------- dgp/lib/enums.py | 113 ------- dgp/lib/meterconfig.py | 125 ------- dgp/lib/project.py | 596 --------------------------------- tests/test_project.py | 194 ----------- tests/test_project_v2.py | 214 ------------ 9 files changed, 1709 deletions(-) delete mode 100644 dgp/core/controllers/common.py delete mode 100644 dgp/gui/qtenum.py delete mode 100644 dgp/gui/views.py delete mode 100644 dgp/lib/datastore.py delete mode 100644 dgp/lib/enums.py delete mode 100644 dgp/lib/meterconfig.py delete mode 100644 dgp/lib/project.py delete mode 100644 tests/test_project.py delete mode 100644 tests/test_project_v2.py diff --git a/dgp/core/controllers/common.py b/dgp/core/controllers/common.py deleted file mode 100644 index d27d27b..0000000 --- a/dgp/core/controllers/common.py +++ /dev/null @@ -1,62 +0,0 @@ -# -*- coding: utf-8 -*- -from PyQt5.QtGui import QStandardItem -from PyQt5.QtWidgets import QMessageBox, QWidget, QInputDialog - -from core.models.project import GravityProject - - -class BaseProjectController(QStandardItem): - def __init__(self, project: GravityProject): - super().__init__(project.name) - self._project = project - self._active = None - - @property - def project(self) -> GravityProject: - return self._project - - @property - def active_entity(self): - return self._active - - def set_active(self, entity): - raise NotImplementedError - - def properties(self): - print(self.__class__.__name__) - - def add_child(self, child): - raise NotImplementedError - - def remove_child(self, child, row: int, confirm: bool=True): - raise NotImplementedError - - -class StandardProjectContainer(QStandardItem): - inherit_context = False - - def __init__(self, label: str, icon: str=None, inherit=False, **kwargs): - super().__init__(label) - self.inherit_context = inherit - self.setEditable(False) - self._attributes = kwargs - - def properties(self): - print(self.__class__.__name__) - - -def confirm_action(title: str, message: str, parent: QWidget=None): - dlg = QMessageBox(QMessageBox.Question, title, message, - QMessageBox.Yes | QMessageBox.No, parent=parent) - dlg.setDefaultButton(QMessageBox.No) - dlg.exec_() - return dlg.result() == QMessageBox.Yes - - -def get_input(title: str, label: str, text: str, parent: QWidget=None): - new_text, result = QInputDialog.getText(parent, title, label, text=text) - if result: - return new_text - return False - - diff --git a/dgp/gui/qtenum.py b/dgp/gui/qtenum.py deleted file mode 100644 index 6a412cd..0000000 --- a/dgp/gui/qtenum.py +++ /dev/null @@ -1,52 +0,0 @@ -# coding: utf-8 - -"""This file redefines some common Qt Enumerations for easier use in code, -and to remove reliance on Qt imports in modules that do not directly -interact with Qt -See: http://pyqt.sourceforge.net/Docs/PyQt4/qt.html - -The enum.IntFlag is not introduced until Python 3.6, but the enum.IntEnum -class is functionally equivalent for our purposes. -""" - -import enum - - -class QtItemFlags(enum.IntEnum): - """Qt Item Flags""" - NoItemFlags = 0 - ItemIsSelectable = 1 - ItemIsEditable = 2 - ItemIsDragEnabled = 4 - ItemIsDropEnabled = 8 - ItemIsUserCheckable = 16 - ItemIsEnabled = 32 - ItemIsTristate = 64 - - -class QtDataRoles(enum.IntEnum): - """Qt Item Data Roles""" - # Data to be rendered as text (QString) - DisplayRole = 0 - # Data to be rendered as decoration (QColor, QIcon, QPixmap) - DecorationRole = 1 - # Data displayed in edit mode (QString) - EditRole = 2 - # Data to be displayed in a tooltip on hover (QString) - ToolTipRole = 3 - # Data to be displayed in the status bar on hover (QString) - StatusTipRole = 4 - WhatsThisRole = 5 - # Font used by the delegate to render this item (QFont) - FontRole = 6 - TextAlignmentRole = 7 - # Background color used to render this item (QBrush) - BackgroundRole = 8 - # Foreground or font color used to render this item (QBrush) - ForegroundRole = 9 - CheckStateRole = 10 - SizeHintRole = 13 - InitialSortOrderRole = 14 - - UserRole = 32 - UIDRole = 33 diff --git a/dgp/gui/views.py b/dgp/gui/views.py deleted file mode 100644 index 3f83543..0000000 --- a/dgp/gui/views.py +++ /dev/null @@ -1,105 +0,0 @@ -# coding: utf-8 - -import logging -import functools - -import PyQt5.QtCore as QtCore -import PyQt5.QtGui as QtGui -import PyQt5.QtWidgets as QtWidgets -from PyQt5.QtCore import pyqtSignal -from PyQt5.QtWidgets import QAction, QMenu, QTreeView - -from dgp.lib import types -from dgp.gui.models import ProjectModel -from dgp.gui.dialogs import PropertiesDialog - - -class ProjectTreeView(QTreeView): - item_removed = pyqtSignal(types.BaseTreeItem) - - def __init__(self, parent=None): - super().__init__(parent=parent) - - self._project = None - self.log = logging.getLogger(__name__) - - self.setMinimumSize(QtCore.QSize(0, 300)) - self.setAlternatingRowColors(False) - self.setAutoExpandDelay(1) - self.setExpandsOnDoubleClick(False) - self.setRootIsDecorated(False) - self.setUniformRowHeights(True) - self.setHeaderHidden(True) - self.setObjectName('project_tree') - self.setContextMenuPolicy(QtCore.Qt.DefaultContextMenu) - - def set_project(self, project): - self._project = project - self._init_model() - - def _init_model(self): - """Initialize a new-style ProjectModel from models.py""" - model = ProjectModel(self._project, parent=self) - self.setModel(model) - self.expandAll() - - def toggle_expand(self, index): - self.setExpanded(index, (not self.isExpanded(index))) - - def contextMenuEvent(self, event: QtGui.QContextMenuEvent, *args, **kwargs): - # get the index of the item under the click event - context_ind = self.indexAt(event.pos()) - context_focus = self.model().itemFromIndex(context_ind) - - info_slot = functools.partial(self._info_action, context_focus) - plot_slot = functools.partial(self._plot_action, context_focus) - menu = QMenu() - info_action = QAction("Properties") - info_action.triggered.connect(info_slot) - plot_action = QAction("Plot in new window") - plot_action.triggered.connect(plot_slot) - if isinstance(context_focus, types.DataSource): - data_action = QAction("Set Active Data File") - # TODO: Work on this later, it breaks plotter currently - # data_action.triggered.connect( - # lambda item: context_focus.__setattr__('active', True) - # ) - menu.addAction(data_action) - data_delete = QAction("Delete Data File") - data_delete.triggered.connect( - lambda: self._remove_data_action(context_focus)) - menu.addAction(data_delete) - - menu.addAction(info_action) - menu.addAction(plot_action) - menu.exec_(event.globalPos()) - event.accept() - - def _plot_action(self, item): - return - - def _info_action(self, item): - dlg = PropertiesDialog(item, parent=self) - dlg.exec_() - - def _remove_data_action(self, item: types.BaseTreeItem): - if not isinstance(item, types.DataSource): - return - self.log.warning("Remove data not yet implemented (bugs to fix)") - return - - raise NotImplementedError("Remove data not yet implemented.") - # Confirmation Dialog - confirm = QtWidgets.QMessageBox(parent=self.parent()) - confirm.setStandardButtons(QtWidgets.QMessageBox.Ok) - confirm.setText("Are you sure you wish to delete: {}".format(item.filename)) - confirm.setIcon(QtWidgets.QMessageBox.Question) - confirm.setWindowTitle("Confirm Delete") - res = confirm.exec_() - if res: - self.item_removed.emit(item) - try: - item.flight.remove_data(item) - except: - self.log.exception("Exception occured removing item from flight") - diff --git a/dgp/lib/datastore.py b/dgp/lib/datastore.py deleted file mode 100644 index 5468aaf..0000000 --- a/dgp/lib/datastore.py +++ /dev/null @@ -1,248 +0,0 @@ -# coding: utf-8 - -import logging -import json -from pathlib import Path -from typing import Union - -import tables -import tables.exceptions -from tables.attributeset import AttributeSet -from pandas import HDFStore, DataFrame - -from dgp.lib.etc import gen_uuid - -""" -Dynamic Gravity Processor (DGP) :: lib/datastore.py -License: Apache License V2 - -Work in Progress -Should be initialized from Project Object, to pass project base dir. - -Requirements: -1. Store a DataFrame on the file system. -2. Retrieve a DataFrame from the file system. -2a. Store/retrieve metadata on other data objects. -2b. Cache any loaded data for the current session (up to a limit? e.g. LRU) -3. Store an arbitrary dictionary. -4. Track original file location of any imported files. - -TODO: Re-focus the idea of this module. -Our PRIMARY goal is to provide a global interface to save/load data (and related meta-data) -from an HDF5 data file. -Other data storage types are not of concern at the moment (e.g. Exporting to CSV, JSON) -- those should be the purview of another specialized module (e.g. exports) - - -METADATA: - -Might be able to use hf.get_node('path') then node._f_setattr('key', 'value') / node._f_getattr('attr') -for metadata storage - -""" - -__all__ = ['init', 'get_datastore', 'HDF5'] - -# Define Data Types -HDF5 = 'hdf5' -HDF5_NAME = 'dgpdata.hdf5' - -_manager = None - - -class _DataStore: - """ - Do not instantiate this class directly. Call the module init() method - DataManager is designed to be a singleton class that is initialized and - stored within the module level var 'manager', other modules can then - request a reference to the instance via get_manager() and use the class - to load and save data. - This is similar in concept to the Python Logging - module, where the user can call logging.getLogger() to retrieve a global - root logger object. - The DataManager will be responsible for most if not all data IO, - providing a centralized interface to store, retrieve, and export data. - To track the various data files that the DataManager manages, a JSON - registry is maintained within the project/data directory. This JSON - registry is updated and queried for relative file paths, and may also be - used to store mappings of uid -> file for individual blocks of data. - """ - _registry = None - _init = False - - def __new__(cls, *args, **kwargs): - global _manager - if _manager is not None and isinstance(_manager, _DataStore): - return _manager - _manager = super().__new__(cls) - return _manager - - def __init__(self, root_path): - self.log = logging.getLogger(__name__) - self.dir = Path(root_path) - if not self.dir.exists(): - self.dir.mkdir(parents=True) - # TODO: Consider searching by extension (.hdf5 .h5) for hdf5 datafile - self._path = self.dir.joinpath(HDF5_NAME) - - self._cache = {} - self._init = True - self.log.debug("DataStore initialized.") - - @property - def initialized(self): - return self._init - - @property - def hdf5path(self): - return str(self._path) - - @hdf5path.setter - def hdf5path(self, value): - value = Path(value) - if not value.exists(): - raise FileNotFoundError - else: - self._path = value - - @staticmethod - def _get_path(flightid, grpid, uid): - return '/'.join(map(str, ['', flightid, grpid, uid])) - - def save_data(self, data, flightid, grpid, uid=None, **kwargs) -> Union[str, None]: - """ - Save a Pandas Series or DataFrame to the HDF5 Store - Data is added to the local cache, keyed by its generated UID. - The generated UID is passed back to the caller for later reference. - This function serves as a dispatch mechanism for different data types. - e.g. To dump a pandas DataFrame into an HDF5 store: - >>> df = DataFrame() - >>> uid = get_datastore().save_data(df) - The DataFrame can later be loaded by calling load_data, e.g. - >>> df = get_datastore().load_data(uid) - - Parameters - ---------- - data: Union[DataFrame, Series] - Data object to be stored on disk via specified format. - flightid: String - grpid: String - Data group (Gravity/Trajectory etc) - uid: String - kwargs: - Optional Metadata attributes to attach to the data node - - Returns - ------- - str: - Generated UID assigned to data object saved. - """ - - self._cache[uid] = data - if uid is None: - uid = gen_uuid('hdf5_') - - # Generate path as /{flight_uid}/{grp_id}/uid - path = self._get_path(flightid, grpid, uid) - - with HDFStore(self.hdf5path) as hdf: - try: - hdf.put(path, data, format='fixed', data_columns=True) - except: - self.log.exception("Exception writing file to HDF5 store.") - return None - else: - self.log.info("Wrote file to HDF5 store at node: %s", path) - # TODO: Figure out how to embed meta-data in the HDF5 store - # It's possible with the underlying PyTables interface, but need to investigate if possible with pandas - # HDFStore interface - - return uid - - def load_data(self, flightid, grpid, uid): - """ - Load data from a managed repository by UID - This public method is a dispatch mechanism that calls the relevant - loader based on the data type of the data represented by UID. - This method will first check the local cache for UID, and if the key - is not located, will load it from the HDF5 Data File. - - Parameters - ---------- - flightid: String - grpid: String - uid: String - UID of stored date to retrieve. - - Returns - ------- - Union[DataFrame, Series, dict] - Data retrieved from store. - - Raises - ------ - KeyError - If data key (/flightid/grpid/uid) does not exist - """ - - if uid in self._cache: - self.log.info("Loading data {} from cache.".format(uid)) - return self._cache[uid] - else: - path = self._get_path(flightid, grpid, uid) - self.log.debug("Loading data %s from hdf5 store.", path) - - with HDFStore(self.hdf5path) as hdf: - data = hdf.get(path) - - # Cache the data - self._cache[uid] = data - return data - - # See https://www.pytables.org/usersguide/libref/file_class.html#tables.File.set_node_attr - # For more details on setting/retrieving metadata from hdf5 file using pytables - # Note that the _v_ and _f_ prefixes are meant for instance variables and public methods - # within pytables - so the inspection warning can be safely ignored - - def get_node_attrs(self, path) -> list: - with tables.open_file(self.hdf5path) as hdf: - try: - return hdf.get_node(path)._v_attrs._v_attrnames - except tables.exceptions.NoSuchNodeError: - raise ValueError("Specified path %s does not exist.", path) - - def _get_node_attr(self, path, attrname): - with tables.open_file(self.hdf5path) as hdf: - try: - return hdf.get_node_attr(path, attrname) - except AttributeError: - return None - - def _set_node_attr(self, path, attrname, value): - with tables.open_file(self.hdf5path, 'a') as hdf: - try: - hdf.set_node_attr(path, attrname, value) - except tables.exceptions.NoSuchNodeError: - self.log.error("Unable to set attribute on path: %s key does not exist.") - raise KeyError("Node %s does not exist", path) - else: - return True - - -def init(path: Path): - """ - Initialize the DataManager with specified base path. All data and - metadata will be stored within this path. - """ - global _manager - if _manager is not None and _manager.initialized: - return False - _manager = _DataStore(path) - return True - - -def get_datastore() -> Union[_DataStore, None]: - if _manager is not None: - return _manager - raise ValueError("DataManager has not been initialized. Call " - "datamanager.init(path)") diff --git a/dgp/lib/enums.py b/dgp/lib/enums.py deleted file mode 100644 index 5f7e235..0000000 --- a/dgp/lib/enums.py +++ /dev/null @@ -1,113 +0,0 @@ -# coding: utf-8 - -import enum -import logging - -""" -Dynamic Gravity Processor (DGP) :: lib/enums.py -License: Apache License V2 - -Overview: -enums.py consolidates various enumeration structures used throughout the project - -Compatibility: -As we are still currently targetting Python 3.5 the following Enum classes -cannot be used - they are not introduced until Python 3.6 - -- enum.Flag -- enum.IntFlag -- enum.auto - -""" - - -LOG_LEVEL_MAP = {'debug': logging.DEBUG, 'info': logging.INFO, - 'warning': logging.WARNING, 'error': logging.ERROR, - 'critical': logging.CRITICAL} - - -class LogColors(enum.Enum): - DEBUG = 'blue' - INFO = 'yellow' - WARNING = 'brown' - ERROR = 'red' - CRITICAL = 'orange' - - -class ProjectTypes(enum.Enum): - AIRBORNE = 'airborne' - MARINE = 'marine' - - -class MeterTypes(enum.Enum): - """Gravity Meter Types""" - AT1A = 'at1a' - AT1M = 'at1m' - ZLS = 'zls' - TAGS = 'tags' - - -class DataTypes(enum.Enum): - """Gravity/Trajectory Data Types""" - GRAVITY = 'gravity' - TRAJECTORY = 'trajectory' - - -class GravityTypes(enum.Enum): - # TODO: add set of fields specific to each dtype - AT1A = ('gravity', 'long_accel', 'cross_accel', 'beam', 'temp', 'status', - 'pressure', 'Etemp', 'gps_week', 'gps_sow') - AT1M = ('at1m',) - ZLS = ('line_name', 'year', 'day', 'hour', 'minute', 'second', 'sensor', - 'spring_tension', 'cross_coupling', 'raw_beam', 'vcc', 'al', 'ax', - 've2', 'ax2', 'xacc2', 'lacc2', 'xacc', 'lacc', 'par_port', - 'platform_period') - TAGS = ('tags', ) - - -# TODO: I don't like encoding the field tuples in enum - do a separate lookup? -class GPSFields(enum.Enum): - sow = ('week', 'sow', 'lat', 'long', 'ell_ht') - hms = ('mdy', 'hms', 'lat', 'long', 'ell_ht') - serial = ('datenum', 'lat', 'long', 'ell_ht') - - -class QtItemFlags(enum.IntEnum): - """Qt Item Flags""" - NoItemFlags = 0 - ItemIsSelectable = 1 - ItemIsEditable = 2 - ItemIsDragEnabled = 4 - ItemIsDropEnabled = 8 - ItemIsUserCheckable = 16 - ItemIsEnabled = 32 - ItemIsTristate = 64 - - -class QtDataRoles(enum.IntEnum): - """Qt Item Data Roles""" - # Data to be rendered as text (QString) - DisplayRole = 0 - # Data to be rendered as decoration (QColor, QIcon, QPixmap) - DecorationRole = 1 - # Data displayed in edit mode (QString) - EditRole = 2 - # Data to be displayed in a tooltip on hover (QString) - ToolTipRole = 3 - # Data to be displayed in the status bar on hover (QString) - StatusTipRole = 4 - WhatsThisRole = 5 - # Font used by the delegate to render this item (QFont) - FontRole = 6 - TextAlignmentRole = 7 - # Background color used to render this item (QBrush) - BackgroundRole = 8 - # Foreground or font color used to render this item (QBrush) - ForegroundRole = 9 - CheckStateRole = 10 - SizeHintRole = 13 - InitialSortOrderRole = 14 - - UserRole = 32 - UIDRole = 33 - diff --git a/dgp/lib/meterconfig.py b/dgp/lib/meterconfig.py deleted file mode 100644 index 3211055..0000000 --- a/dgp/lib/meterconfig.py +++ /dev/null @@ -1,125 +0,0 @@ -# coding: utf-8 - -import os -import uuid -import configparser - -from dgp.gui.qtenum import QtDataRoles -from dgp.lib.etc import gen_uuid -from dgp.lib.types import TreeItem - -""" -Dynamic Gravity Processor (DGP) :: meterconfig.py -License: Apache License V2 - -Overview: -meterconfig.py provides the object framework for dealing with Gravity Meter/Sensor configurations, -each sensor may have different configuration values that may impact the data processing, and these -classes will provide a way to easily store and retrieve those configuration values when a meter -is associated with a particular project/flight. -""" - - -class MeterConfig(TreeItem): - """ - MeterConfig will contain the configuration of a specific gravity meter, giving the - surveyor an easy way to specify the use of different meters on different flight lines. - Initially dealing only with DGS AT1[A/M] meter types, need to add logic to handle other meters later. - """ - - def __init__(self, name, meter_type='AT1', parent=None, **config): - uid = gen_uuid('mtr') - super().__init__(uid, parent=parent) - self.name = name - self.type = meter_type - self.config = {k.lower(): v for k, v in config.items()} - - @staticmethod - def from_ini(path): - raise NotImplementedError - - def data(self, role: QtDataRoles): - if role == QtDataRoles.DisplayRole: - return "{} <{}>".format(self.name, self.type) - return None - - def __getitem__(self, item): - """Allow getting of configuration values using container type syntax e.g. value = MeterConfig['key']""" - if isinstance(item, slice): - raise NotImplementedError - return self.config.get(item.lower(), None) - - def __setitem__(self, key, value): - """Allow setting of configuration values using container type syntax e.g. MeterConfig['key'] = value""" - try: - value = float(value) - except ValueError: - pass - self.config[key.lower()] = value - - def __len__(self): - return len(self.config) - - def __str__(self): - return "Meter {}".format(self.name) - - -class AT1Meter(MeterConfig): - """ - Subclass of MeterConfig for DGS AT1 Airborne/Marine meter configurations. - Configuration values are cast to float upon - """ - def __init__(self, name, **config): - # Do some pre-processing of fields before passing to super - at1config = self.process_config(self.get_valid_fields(), **config) - super().__init__(name, 'AT1', **at1config) - - @staticmethod - def get_valid_fields(): - # Sensor fields - sensor_fields = ['g0', 'GravCal', 'LongCal', 'CrossCal', 'LongOffset', 'CrossOffset', 'stempgain', - 'Temperature', 'stempoffset', 'pressgain', 'presszero', 'beamgain', 'beamzero', - 'Etempgain', 'Etempzero'] - # Cross coupling Fields - cc_fields = ['vcc', 've', 'al', 'ax', 'monitors'] - - # Platform Fields - platform_fields = ['Cross_Damping', 'Cross_Periode', 'Cross_Lead', 'Cross_Gain', 'Cross_Comp', - 'Cross_Phcomp', 'Cross_sp', 'Long_Damping', 'Long_Periode', 'Long_Lead', 'Long_Gain', - 'Long_Comp', 'Long_Phcomp', 'Long_sp', 'zerolong', 'zerocross', 'CrossSp', 'LongSp'] - - # Create a set with all unique and valid field keys - return set().union(sensor_fields, cc_fields, platform_fields) - - @staticmethod - def process_config(valid_fields, **config): - """Return a config dictionary by filtering out invalid fields, and lower-casing all keys""" - def cast(value): - try: - return float(value) - except ValueError: - return value - - return {k.lower(): cast(v) for k, v in config.items() if k.lower() in map(str.lower, valid_fields)} - - @staticmethod - def from_ini(path): - """ - Read an AT1 Meter Configuration from a meter ini file - :param path: path to meter ini file - :return: instance of AT1Meter with configuration set by ini file - """ - if not os.path.exists(path): - raise OSError("Invalid path to ini.") - config = configparser.ConfigParser(strict=False) - config.read(path) - - sensor_fld = dict(config['Sensor']) - xcoupling_fld = dict(config['crosscouplings']) - platform_fld = dict(config['Platform']) - - name = str.strip(sensor_fld['meter'], '"') - - merge_config = {**sensor_fld, **xcoupling_fld, **platform_fld} - at1config = AT1Meter.process_config(AT1Meter.get_valid_fields(), **merge_config) - return AT1Meter(name, **at1config) diff --git a/dgp/lib/project.py b/dgp/lib/project.py deleted file mode 100644 index d47e239..0000000 --- a/dgp/lib/project.py +++ /dev/null @@ -1,596 +0,0 @@ -# coding: utf-8 - -import pickle -import pathlib -import logging -from datetime import datetime -from itertools import count - -from pandas import DataFrame - -from dgp.gui.qtenum import QtItemFlags, QtDataRoles -from .meterconfig import MeterConfig, AT1Meter -from .etc import gen_uuid -from .types import DataSource, FlightLine, TreeItem -from .enums import DataTypes -from . import datastore as dm -from .enums import DataTypes - -""" -Dynamic Gravity Processor (DGP) :: project.py -License: Apache License V2 - -Overview: -project.py provides the object framework for setting up a gravity processing -project, which may include project specific configurations and settings, -project specific files and imports, and the ability to segment a project into -individual flights and flight lines. - -Guiding Principles: -This module has been designed to be explicitly independant of Qt, primarly -because it is tricky or impossible to pickle many Qt objects. This also in -theory means that the classes contained within can be utilized for other uses, -without relying on the specific Qt GUI package. -Because of this, some abstraction has been necesarry particulary in the -models.py class, which acts as a bridge between the Classes in this module, -and the Qt GUI - providing the required interfaces to display and interact with -the project from a graphical user interface (Qt). -Though there is no dependence on Qt itself, there are a few methods e.g. the -data() method in several classes, that are particular to our Qt GUI - -specifically they return internal data based on a 'role' parameter, which is -simply an int passed by a Qt Display Object telling the underlying code which -data is being requested for a particular display type. - -Workflow: - User creates new project - enters project name, description, and location to - save project. - - User can additionaly define survey parameters specific to the project - - User can then add a Gravity Meter configuration to the project - - User then creates new flights each day a flight is flown, flight - parameters are defined - - Data files are imported into project and associated with a flight - - Upon import the file will be converted to pandas DataFrame then - written out to the project directory as HDF5. - - User selects between flights in GUI to view in plot, data is pulled - from the Flight object - -""" - -_log = logging.getLogger(__name__) -DATA_DIR = 'data' - - -def can_pickle(attribute): - """Helper function used by __getstate__ to determine if an attribute - can/should be pickled.""" - no_pickle = [logging.Logger, DataFrame] - for invalid in no_pickle: - if isinstance(attribute, invalid): - return False - if attribute.__class__.__name__ == 'ProjectModel': - return False - return True - - -class GravityProject(TreeItem): - """ - GravityProject will be the base class defining common values for both - airborne and marine gravity survey projects. - """ - version = 0.2 # Used for future pickling compatibility - - def __init__(self, path: pathlib.Path, name: str, description: str=None, - model_parent=None): - """ - Initializes a new GravityProject project class - - Parameters - ---------- - path : pathlib.Path - Directory which will be used to store project configuration and data - name : str - Human readable name to call this project. - description : str - Short description for this project. - """ - super().__init__(gen_uuid('prj'), parent=None) - self._model_parent = model_parent - self.projectdir = pathlib.Path(path) - - if not self.projectdir.exists(): - raise FileNotFoundError - - if not self.projectdir.is_dir(): - raise NotADirectoryError - - self.name = name - self.description = description or '' - - dm.init(self.projectdir.joinpath(DATA_DIR)) - - # Store MeterConfig objects in dictionary keyed by the meter name - self._sensors = {} - - _log.debug("Gravity Project Initialized.") - - def data(self, role: QtDataRoles): - if role == QtDataRoles.DisplayRole: - return self.name - return super().data(role) - - @property - def model(self): - return self._model_parent - - @model.setter - def model(self, value): - self._model_parent = value - - def add_meter(self, meter: MeterConfig) -> MeterConfig: - """Add an existing MeterConfig class to the dictionary of meters""" - if isinstance(meter, MeterConfig): - self._sensors[meter.name] = meter - return self._sensors[meter.name] - else: - raise ValueError("meter param is not an instance of MeterConfig") - - def get_meter(self, name): - return self._sensors.get(name, None) - - def import_meter(self, path: pathlib.Path): - """Import a meter config from ini file and add it to the sensors dict""" - # TODO: Need to construct different meter types (other than AT1 meter) - if path.exists(): - try: - meter = AT1Meter.from_ini(path) - self._sensors[meter.name] = meter - except ValueError: - raise ValueError("Meter .ini file could not be imported, check " - "format.") - else: - return self._sensors[meter.name] - else: - raise OSError("Path {} doesn't exist.".format(path)) - - @property - def meters(self): - """Return list of meter names assigned to this project.""" - for meter in self._sensors.values(): - yield meter - - def save(self, path: pathlib.Path = None): - """ - Saves the project by pickling the project class and saving to a file - specified by path. - - Parameters - ---------- - path : pathlib.Path, optional - Optional path object to manually specify the save location for the - project class object. By default if no path is passed to the save - function, the project will be saved in the projectdir directory in a - file named for the project name, with extension .d2p - - Returns - ------- - bool - True if successful - - """ - if path is None: - path = self.projectdir.joinpath('{}.d2p'.format(self.name)) - if not isinstance(path, pathlib.Path): - path = pathlib.Path(path) - with path.open('wb') as f: - pickle.dump(self, f) - return True - - @staticmethod - def load(path: pathlib.Path): - """ - Loads an existing project by unpickling a previously pickled project - class from a file specified by path. - - Parameters - ---------- - path : pathlib.Path - Path object referencing the binary file containing a pickled class - object e.g. Path(project.d2p). - - Returns - ------- - GravityProject - Unpickled GravityProject (or descendant) object. - - Raises - ------ - FileNotFoundError - If path does not exist. - - """ - if not isinstance(path, pathlib.Path): - path = pathlib.Path(path) - if not path.exists(): - raise FileNotFoundError - - with path.open('rb') as pickled: - project = pickle.load(pickled) - # Update project directory in case project was moved - project.projectdir = path.parent - return project - - def __iter__(self): - raise NotImplementedError("Abstract definition, not implemented.") - - def __getstate__(self): - """ - Used by the python pickle.dump method to determine if a class __dict__ - member is 'pickleable' - - Returns - ------- - dict - Dictionary of self.__dict__ items that have been filtered using the - can_pickle() function. - """ - return {k: v for k, v in self.__dict__.items() if can_pickle(v)} - - def __setstate__(self, state) -> None: - """ - Used to adjust state of the class upon loading using pickle.load. This - is used to reinitialize class - attributes that could not be pickled (filtered out using __getstate__). - In future this method may be used to ensure backwards compatibility with - older version project classes that are loaded using a newer - software/project version. - - Parameters - ---------- - state - Input state passed by the pickle.load function - - Returns - ------- - None - """ - self.__dict__.update(state) - dm.init(self.projectdir.joinpath('data')) - - -class Flight(TreeItem): - """ - Define a Flight class used to record and associate data with an entire - survey flight (takeoff -> landing) - This class is iterable, yielding the flightlines named tuple objects from - its lines dictionary - """ - - def __init__(self, project: GravityProject, name: str, - meter: MeterConfig = None, **kwargs): - """ - The Flight object represents a single literal survey flight - (Takeoff -> Landing) and stores various parameters and configurations - related to the flight. - The Flight class provides an easy interface to retrieve GPS and Gravity - data which has been associated with it in the project class. - Currently a Flight tracks a single GPS and single Gravity data file, if - a second file is subsequently imported the reference to the old file - will be overwritten. - In future we plan on expanding the functionality so that multiple data - files might be assigned to a flight, with various operations - (comparison, merge, join) able to be performed on them. - - Parameters - ---------- - parent : GravityProject - Parent project class which this flight belongs to. This is essential - as the project stores the references to all data files which the - flight may rely upon. - name : str - Human-readable reference name for this flight. - meter : MeterConfig - Gravity Meter configuration to assign to this flight. - kwargs - Arbitrary keyword arguments. - uuid : uuid.uuid - Unique identifier to assign to this flight, else a uuid will be - generated upon creation using the - uuid.uuid4() method. - date : datetime.date - Datetime object to assign to this flight. - """ - uid = kwargs.get('uuid', gen_uuid('flt')) - super().__init__(uid, parent=None) - - self.name = name - self._project = project - self._icon = ':/icons/airborne' - self.style = {'icon': ':/icons/airborne', - QtDataRoles.BackgroundRole: 'LightGray'} - self.meter = meter - self.date = kwargs.get('date', datetime.today()) - - # Flight attribute dictionary, containing survey values e.g. still - # reading, tie location/value - self._survey_values = {} - - self.flight_timeshift = 0 - - # Issue #36 Plotting data channels - self._default_plot_map = {'gravity': 0, 'long': 1, 'cross': 1} - - self._lines_uid = self.append_child(Container(ctype=FlightLine, - parent=self, - name='Flight Lines')) - self._data_uid = self.append_child(Container(ctype=DataSource, - parent=self, - name='Data Files')) - self._line_sequence = count() - self.has_gravity = False - self.has_trajectory = False - - def data(self, role): - if role == QtDataRoles.ToolTipRole: - return "<{name}::{uid}>".format(name=self.name, uid=self.uid) - if role == QtDataRoles.DisplayRole: - return "{name} - {date}".format(name=self.name, date=self.date) - return super().data(role) - - @property - def gravity(self): - try: - return self.get_source(DataTypes.GRAVITY).load() - except AttributeError: - return None - - @property - def trajectory(self): - try: - return self.get_source(DataTypes.TRAJECTORY).load() - except AttributeError: - return None - - @property - def lines(self): - for line in sorted(self.get_child(self._lines_uid), - key=lambda x: x.start): - yield line - - @property - def channels(self) -> list: - """Return data channels as list of DataChannel objects""" - rv = [] - for source in self.get_child(self._data_uid): # type: DataSource - # TODO: Work on active sources later - # if source is None or not source.active: - rv.extend(source.get_channels()) - return rv - - def get_source(self, dtype: DataTypes) -> DataSource: - """Get the first DataSource of type 'dtype'""" - for source in self.get_child(self._data_uid): - if source.dtype == dtype: - return source - - def register_data(self, datasrc: DataSource): - """Register a data file for use by this Flight""" - _log.info("Flight {} registering data source: {} UID: {}".format( - self.name, datasrc.filename, datasrc.uid)) - datasrc.flight = self - self.get_child(self._data_uid).append_child(datasrc) - - # TODO: This check needs to be revised when considering multiple datasets per flight - if datasrc.dtype == DataTypes.GRAVITY: - self.has_gravity = True - elif datasrc.dtype == DataTypes.TRAJECTORY: - self.has_trajectory = True - - # TODO: Hold off on this - breaks plot when we change source - # print("Setting new Dsrc to active") - # datasrc.active = True - # self.update() - - def remove_data(self, datasrc: DataSource) -> bool: - # TODO: This check needs to be revised when considering multiple datasets per flight - if datasrc.dtype == DataTypes.GRAVITY: - self.has_gravity = False - elif datasrc.dtype == DataTypes.TRAJECTORY: - self.has_trajectory = False - return self.get_child(self._data_uid).remove_child(datasrc) - - def add_line(self, line: FlightLine) -> int: - """Add a flight line to the flight by start/stop index and sequence - number. - - Returns - ------- - Sequence number of added line. - """ - lines = self.get_child(self._lines_uid) - line.sequence = next(self._line_sequence) - lines.append_child(line) - return line.sequence - - def get_line(self, uid): - return self.get_child(self._lines_uid).get_child(uid) - - def remove_line(self, uid): - """ Remove a flight line """ - lines = self.get_child(self._lines_uid) - child = lines.get_child(uid) - lines.remove_child(child) - - def clear_lines(self): - """Removes all Lines from Flight""" - raise NotImplementedError("clear_lines not implemented yet.") - - def __iter__(self): - """ - Implement class iteration, allowing iteration through FlightLines - Yields - ------- - FlightLine : NamedTuple - Next FlightLine in Flight.lines - """ - for line in self.get_child(self._lines_uid): - yield line - - def __len__(self): - return len(self.get_child(self._lines_uid)) - - def __repr__(self): - return "{cls}({parent}, {name}, {meter})".format( - cls=type(self).__name__, - parent=self.parent, name=self.name, - meter=self.meter) - - def __str__(self): - return "Flight: {name}".format(name=self.name) - - def __getstate__(self): - return {k: v for k, v in self.__dict__.items() if can_pickle(v)} - - def __setstate__(self, state): - self.__dict__.update(state) - self._gravdata = None - self._gpsdata = None - - -class Container(TreeItem): - # Arbitrary list of permitted types - ctypes = {Flight, MeterConfig, FlightLine, DataSource} - - def __init__(self, ctype, parent=None, **kwargs): - """ - Defines a generic container designed for use with models.ProjectModel, - implementing the required functions to display and contain child - objects. - When used/displayed by a TreeView the default behavior is to display the - ctype.__name__ and a tooltip stating "Container for type - objects". - - The Container contains only objects of type ctype, or those derived from - it. Attempting to add a child of a different type will simply fail, - with the add_child method returning - False. - Parameters - ---------- - ctype : Class - The object type this container will contain as children, permitted - classes are: - Flight - FlightLine - MeterConfig - parent - Parent object, e.g. Gravity[Airborne]Project, Flight etc. The - container will set the 'parent' attribute of any children added - to the container to this value. - args : [List] - Optional child objects to add to the Container at instantiation - kwargs - Optional key-word arguments. Recognized values: - str name : override the default name of this container (which is - _ctype.__name__) - """ - super().__init__(uid=gen_uuid('box'), parent=parent) - assert ctype in Container.ctypes - # assert parent is not None - self._ctype = ctype - self._name = kwargs.get('name', self._ctype.__name__) - _icon = ':/icons/folder_open.png' - self.style = {QtDataRoles.DecorationRole: _icon, - QtDataRoles.BackgroundRole: 'LightBlue'} - - @property - def ctype(self): - return self._ctype - - @property - def name(self): - return self._name.lower() - - def data(self, role: QtDataRoles): - if role == QtDataRoles.ToolTipRole: - return "Container for {} objects. <{}>".format(self._name, self.uid) - if role == QtDataRoles.DisplayRole: - return self._name - return super().data(role) - - def append_child(self, child) -> None: - """ - Add a child object to the container. - The child object must be an instance of the ctype of the container, - otherwise it will be rejected. - Parameters - ---------- - child - Child object of compatible type for this container. - Raises - ------ - TypeError: - Raises TypeError if child is not of the permitted type defined by - this container. - """ - if not isinstance(child, self._ctype): - raise TypeError("Child type is not permitted in this container.") - super().append_child(child) - - def __str__(self): - return str(self._children) - - def __repr__(self): - return ''.format(self.ctype, self.uid) - - -class AirborneProject(GravityProject): - """ - A subclass of the base GravityProject, AirborneProject will define an - Airborne survey project with parameters unique to airborne operations, - and defining flight lines etc. - - """ - - def __iter__(self): - pass - - def __init__(self, path: pathlib.Path, name, description=None, parent=None): - super().__init__(path, name, description) - - self._flight_uid = self.append_child(Container(ctype=Flight, - name="Flights", - parent=self)) - self._meter_uid = self.append_child(Container(ctype=MeterConfig, - name="Meter Configs", - parent=self)) - - _log.debug("Airborne project initialized") - - def data(self, role: QtDataRoles): - if role == QtDataRoles.DisplayRole: - return "{} :: <{}>".format(self.name, self.projectdir.resolve()) - return super().data(role) - - def update(self, **kwargs): - """Used to update the wrapping (parent) ProjectModel of this project for - GUI display""" - if self.model is not None: - self.model.update(**kwargs) - - def add_flight(self, flight: Flight) -> None: - flight.parent = self - self.get_child(self._flight_uid).append_child(flight) - - def remove_flight(self, flight: Flight): - self.get_child(self._flight_uid).remove_child(flight) - - def get_flight(self, uid): - return self.get_child(self._flight_uid).get_child(uid) - - @property - def count_flights(self): - return len(self.get_child(self._flight_uid)) - - @property - def flights(self): - for flight in self.get_child(self._flight_uid): - yield flight diff --git a/tests/test_project.py b/tests/test_project.py deleted file mode 100644 index 64c4806..0000000 --- a/tests/test_project.py +++ /dev/null @@ -1,194 +0,0 @@ -# coding: utf-8 - -import unittest -import random -import tempfile -from datetime import datetime, timedelta -from pathlib import Path - -from .context import dgp -from dgp.lib.project import * -from dgp.lib.meterconfig import * - - -class TestProject(unittest.TestCase): - - def setUp(self): - """Set up some dummy classes for testing use""" - self.todelete = [] - self.project = AirborneProject(path=Path('./tests'), - name='Test Airborne Project') - - # Sample values for testing meter configs - self.meter_vals = { - 'gravcal': random.randint(200000, 300000), - 'longcal': random.uniform(150.0, 250.0), - 'crosscal': random.uniform(150.0, 250.0), - 'cross_lead': random.random() - } - self.at1a5 = MeterConfig(name="AT1A-5", **self.meter_vals) - self.project.add_meter(self.at1a5) - - def test_project_directory(self): - """ - Test the handling of the directory specifications within a project - Project should take an existing directory as a path, raising - FileNotFoundError if it doesnt exist. - If the path exists but is a file, Project should automatically strip the - leaf and use the parent path. - """ - with self.assertRaises(FileNotFoundError): - project = GravityProject(path=Path('tests/invalid_dir'), - name='Test') - - with tempfile.TemporaryDirectory() as td: - project_dir = Path(td) - project = GravityProject(path=project_dir, name='Test') - self.assertEqual(project.projectdir, project_dir) - - # Test exception given a file instead of directory - with tempfile.NamedTemporaryFile() as tf: - tf.write(b"This is not a directory") - with self.assertRaises(NotADirectoryError): - project = GravityProject(path=Path(str(tf.name)), name='Test') - - def test_pickle_project(self): - # TODO: Add further complexity to testing of project pickling - flight = Flight(self.project, 'test_flight', self.at1a5) - line = FlightLine(0, 1, 0, None) - flight.add_line(line) - self.project.add_flight(flight) - - with tempfile.TemporaryDirectory() as td: - save_loc = Path(td, 'project.d2p') - self.project.save(save_loc) - - loaded_project = AirborneProject.load(save_loc) - self.assertIsInstance(loaded_project, AirborneProject) - self.assertEqual(len(list(loaded_project.flights)), 1) - self.assertEqual(loaded_project.get_flight(flight.uid).uid, - flight.uid) - self.assertEqual(loaded_project.get_flight(flight.uid).meter.name, - 'AT1A-5') - - -class TestFlight(unittest.TestCase): - def setUp(self): - self._trj_data_path = 'tests/sample_data/eotvos_short_input.txt' - hour = timedelta(hours=1) - self._line0 = FlightLine(datetime.now(), datetime.now()+hour) - self._line1 = FlightLine(datetime.now(), datetime.now()+hour+hour) - self.lines = [self._line0, self._line1] - self.flight = Flight(None, 'TestFlight', None) - - def test_flight_init(self): - """Test initialization properties of a new Flight""" - with tempfile.TemporaryDirectory() as td: - project_dir = Path(td) - project = AirborneProject(path=project_dir, name='TestFlightPrj') - flt = Flight(project, 'Flight1') - assert flt.channels == [] - self.assertEqual(len(flt), 0) - - def test_line_manipulation(self): - l0 = self.flight.add_line(self._line0) - self.assertEqual(0, l0) - self.flight.remove_line(self._line0.uid) - self.assertEqual(0, len(self.flight)) - - l1 = self.flight.add_line(self._line1) - self.assertEqual(1, l1) - l2 = self.flight.add_line(self._line0) - self.assertEqual(2, l2) - self.assertEqual(2, len(self.flight)) - - def test_flight_iteration(self): - l0 = self.flight.add_line(self._line0) - l1 = self.flight.add_line(self._line1) - # Test sequence numbers - self.assertEqual(0, l0) - self.assertEqual(1, l1) - - for line in self.flight.lines: - self.assertTrue(line in self.lines) - - for line in self.flight: - self.assertTrue(line in self.lines) - - -class TestMeterconfig(unittest.TestCase): - def setUp(self): - self.ini_path = os.path.abspath('tests/at1m.ini') - self.config = { - 'g0': 10000.0, - 'GravCal': 227626.0, - 'LongCal': 200.0, - 'CrossCal': 200.1, - 'vcc': 0.0, - 've': 0.0, - 'Cross_Damping': 550.0, - 'Long_Damping': 550.0, - 'at1_invalid': 12345.8 - } - - def test_MeterConfig(self): - mc = MeterConfig(name='Test-1', **self.config) - self.assertEqual(mc.name, 'Test-1') - - # Test get, set and len methods of the MeterConfig class - self.assertEqual(len(mc), len(self.config)) - - for k in self.config.keys(): - self.assertEqual(mc[k], self.config[k]) - # Test case-insensitive handling - self.assertEqual(mc[k.lower()], self.config[k]) - - mc['g0'] = 500.01 - self.assertEqual(mc['g0'], 500.01) - self.assertIsInstance(mc['g0'], float) - # Test the setting of non-float types - mc['monitor'] = True - self.assertTrue(mc['monitor']) - - mc['str_val'] = 'a string' - self.assertEqual(mc['str_val'], 'a string') - - # Test the class handling of invalid requests/types - with self.assertRaises(NotImplementedError): - mc[0: 3] - - with self.assertRaises(NotImplementedError): - MeterConfig.from_ini(self.ini_path) - - def test_AT1Meter_config(self): - at1 = AT1Meter('AT1M-5', **self.config) - - self.assertEqual(at1.name, 'AT1M-5') - - # Test that invalid field was not set - self.assertIsNone(at1['at1_invalid']) - valid_fields = {k: v for k, v in self.config.items() if k != 'at1_invalid'} - for k in valid_fields.keys(): - # Check all valid fields were set - self.assertEqual(at1[k], valid_fields[k]) - - def test_AT1Meter_from_ini(self): - at1 = AT1Meter.from_ini(self.ini_path) - - # Check type inheritance - self.assertIsInstance(at1, AT1Meter) - self.assertIsInstance(at1, MeterConfig) - - self.assertEqual(at1.name, 'AT1M-1U') - - cfp = configparser.ConfigParser(strict=False) # strict=False to allow for duplicate keys in config - cfp.read(self.ini_path) - - skip_fields = ['meter', '00gravcal'] - for k, v in cfp['Sensor'].items(): - if k in skip_fields: - continue - self.assertEqual(float(cfp['Sensor'][k]), at1[k]) - - - diff --git a/tests/test_project_v2.py b/tests/test_project_v2.py deleted file mode 100644 index e19196c..0000000 --- a/tests/test_project_v2.py +++ /dev/null @@ -1,214 +0,0 @@ -# -*- coding: utf-8 -*- - -""" -Unit tests for new Project/Flight data classes, including JSON -serialization/de-serialization -""" -import json -import time -from pathlib import Path -from pprint import pprint - -import pytest -from core.models import project, flight -from core.models.meter import Gravimeter - - -@pytest.fixture() -def make_flight(): - def _factory(name): - return flight.Flight(name) - return _factory - - -@pytest.fixture() -def make_line(): - seq = 0 - - def _factory(start, stop): - nonlocal seq - seq += 1 - return flight.FlightLine(start, stop, seq) - return _factory - - -def test_flight_actions(make_flight, make_line): - flt = flight.Flight('test_flight') - assert 'test_flight' == flt.name - - f1 = make_flight('Flight-1') # type: flight.Flight - f2 = make_flight('Flight-2') # type: flight.Flight - - assert 'Flight-1' == f1.name - assert 'Flight-2' == f2.name - - assert not f1.uid == f2.uid - - line1 = make_line(0, 10) # type: flight.FlightLine - line2 = make_line(11, 21) # type: flight.FlightLine - - assert not line1.sequence == line2.sequence - - assert 0 == len(f1.flight_lines) - assert 0 == len(f2.flight_lines) - - f1.add_child(line1) - assert 1 == len(f1.flight_lines) - - with pytest.raises(ValueError): - f1.add_child('not a flight line') - - assert line1 in f1.flight_lines - - f1.remove_child(line1.uid) - assert line1 not in f1.flight_lines - - f1.add_child(line1) - f1.add_child(line2) - - assert line1 in f1.flight_lines - assert line2 in f1.flight_lines - assert 2 == len(f1.flight_lines) - - assert '' % f1.uid == repr(f1) - - -def test_project_actions(): - # TODO: test add/get/remove child - pass - - -def test_project_attr(make_flight): - prj_path = Path('./project-1') - prj = project.AirborneProject(name="Project-1", path=prj_path, - description="Test Project 1") - assert "Project-1" == prj.name - assert prj_path == prj.path - assert "Test Project 1" == prj.description - - prj.set_attr('tie_value', 1234) - assert 1234 == prj.tie_value - assert 1234 == prj['tie_value'] - assert 1234 == prj.get_attr('tie_value') - - prj.set_attr('_my_private_val', 2345) - assert 2345 == prj._my_private_val - assert 2345 == prj['_my_private_val'] - assert 2345 == prj.get_attr('_my_private_val') - - flt1 = make_flight('flight-1') - prj.add_child(flt1) - # assert flt1.parent == prj.uid - - -def test_project_get_child(make_flight): - prj = project.AirborneProject(name="Project-2", path=Path('.')) - f1 = make_flight('Flt-1') - f2 = make_flight('Flt-2') - f3 = make_flight('Flt-3') - prj.add_child(f1) - prj.add_child(f2) - prj.add_child(f3) - - assert f1 == prj.get_child(f1.uid) - assert f3 == prj.get_child(f3.uid) - assert not f2 == prj.get_child(f1.uid) - - -def test_project_remove_child(make_flight): - prj = project.AirborneProject(name="Project-3", path=Path('.')) - f1 = make_flight('Flt-1') - f2 = make_flight('Flt-2') - f3 = make_flight('Flt-3') - - prj.add_child(f1) - prj.add_child(f2) - - assert 2 == len(prj.flights) - assert f1 in prj.flights - assert f2 in prj.flights - assert f3 not in prj.flights - - assert not prj.remove_child(f3.uid) - assert prj.remove_child(f1.uid) - - assert f1 not in prj.flights - assert 1 == len(prj.flights) - - -def test_project_serialize(make_flight, make_line): - prj_path = Path('./prj-1') - prj = project.AirborneProject(name="Project-3", path=prj_path, - description="Test Project Serialization") - f1 = make_flight('flt1') # type: flight.Flight - line1 = make_line(0, 10) # type: # flight.FlightLine - data1 = flight.DataFile('/%s' % f1.uid.base_uuid, 'df1', 'gravity') - f1.add_child(line1) - f1.add_child(data1) - prj.add_child(f1) - - prj.set_attr('start_tie_value', 1234.90) - prj.set_attr('end_tie_value', 987.123) - - encoded = prj.to_json(indent=4) - - decoded_dict = json.loads(encoded) - # TODO: Test that all params are there - - -def test_project_deserialize(make_flight, make_line): - attrs = { - 'attr1': 12345, - 'attr2': 192.201, - 'attr3': False, - 'attr4': "Notes on project" - - } - prj = project.AirborneProject(name="SerializeTest", path=Path('./prj1'), - description="Test DeSerialize") - - for key, value in attrs.items(): - prj.set_attr(key, value) - - assert attrs == prj._attributes - - f1 = make_flight("Flt1") # type: flight.Flight - f2 = make_flight("Flt2") - line1 = make_line(0, 10) # type: flight.FlightLine - line2 = make_line(11, 20) - f1.add_child(line1) - f1.add_child(line2) - - prj.add_child(f1) - prj.add_child(f2) - - mtr = Gravimeter('AT1M-X') - prj.add_child(mtr) - - serialized = prj.to_json(indent=4) - time.sleep(0.25) # Fuzz for modification date - prj_deserialized = project.AirborneProject.from_json(serialized) - re_serialized = prj_deserialized.to_json(indent=4) - assert serialized == re_serialized - - assert attrs == prj_deserialized._attributes - assert prj.creation_time == prj_deserialized.creation_time - - flt_names = [flt.name for flt in prj_deserialized.flights] - assert "Flt1" in flt_names - assert "Flt2" in flt_names - - f1_reconstructed = prj_deserialized.get_child(f1.uid) - assert f1.uid in [flt.uid for flt in prj_deserialized.flights] - assert 2 == len(prj_deserialized.flights) - prj_deserialized.remove_child(f1_reconstructed.uid) - assert 1 == len(prj_deserialized.flights) - assert f1.uid not in [flt.uid for flt in prj_deserialized.flights] - assert f1_reconstructed.name == f1.name - assert f1_reconstructed.uid == f1.uid - - assert f2.uid in [flt.uid for flt in prj_deserialized.flights] - - assert line1.uid in [line.uid for line in f1_reconstructed.flight_lines] - assert line2.uid in [line.uid for line in f1_reconstructed.flight_lines] - From e6a4f5573f8b23c0bd6ad48a744d0d0930fdc9a8 Mon Sep 17 00:00:00 2001 From: Zachery Brady Date: Mon, 25 Jun 2018 18:18:34 -0600 Subject: [PATCH 114/236] Improvements to core controllers/models Enhancements to project models/controllers as funtionality is identified to take over from old project structure. --- dgp/core/controllers/BaseProjectController.py | 63 ++++++ dgp/core/controllers/Containers.py | 97 ++++++++ dgp/core/controllers/FlightController.py | 106 ++++----- dgp/core/controllers/HDFController.py | 178 +++++++++++++++ dgp/core/controllers/MeterController.py | 9 +- dgp/core/controllers/ProjectController.py | 203 +++++++++++++---- dgp/core/models/ProjectTreeModel.py | 4 +- dgp/core/models/data.py | 31 +++ dgp/core/models/flight.py | 71 +----- dgp/core/models/meter.py | 55 +++++ dgp/core/models/project.py | 11 +- dgp/core/oid.py | 2 +- dgp/core/types/__init__.py | 0 dgp/core/types/enumerations.py | 113 +++++++++ dgp/core/views/ProjectTreeView.py | 5 +- tests/test_project_controllers.py | 1 + tests/test_project_models.py | 214 ++++++++++++++++++ 17 files changed, 991 insertions(+), 172 deletions(-) create mode 100644 dgp/core/controllers/BaseProjectController.py create mode 100644 dgp/core/controllers/Containers.py create mode 100644 dgp/core/controllers/HDFController.py create mode 100644 dgp/core/models/data.py create mode 100644 dgp/core/types/__init__.py create mode 100644 dgp/core/types/enumerations.py create mode 100644 tests/test_project_controllers.py create mode 100644 tests/test_project_models.py diff --git a/dgp/core/controllers/BaseProjectController.py b/dgp/core/controllers/BaseProjectController.py new file mode 100644 index 0000000..49d20eb --- /dev/null +++ b/dgp/core/controllers/BaseProjectController.py @@ -0,0 +1,63 @@ +# -*- coding: utf-8 -*- +from pathlib import Path +from typing import Optional, Any + +from PyQt5.QtCore import QObject +from PyQt5.QtGui import QStandardItem + +from core.controllers.HDFController import HDFController +from core.models.project import GravityProject + + +class BaseProjectController(QStandardItem): + def __init__(self, project: GravityProject, parent=None): + super().__init__(project.name) + self._project = project + self._hdfc = HDFController(self._project.path) + self._active = None + self._parent = parent + + def get_parent(self) -> QObject: + return self._parent + + def set_parent(self, value: QObject): + self._parent = value + + @property + def name(self) -> str: + return self.project.name + + @property + def project(self) -> GravityProject: + return self._project + + @property + def path(self) -> Path: + return self._project.path + + @property + def active_entity(self): + return self._active + + @property + def hdf5store(self) -> HDFController: + return self._hdfc + + def set_active(self, entity, emit: bool = True): + raise NotImplementedError + + def properties(self): + print(self.__class__.__name__) + + def add_child(self, child): + raise NotImplementedError + + def remove_child(self, child, row: int, confirm: bool=True): + raise NotImplementedError + + def load_file(self, ftype, destination: Optional[Any]=None) -> None: + raise NotImplementedError + + def save(self): + return self.project.to_json(indent=2, to_file=True) + diff --git a/dgp/core/controllers/Containers.py b/dgp/core/controllers/Containers.py new file mode 100644 index 0000000..9f0da76 --- /dev/null +++ b/dgp/core/controllers/Containers.py @@ -0,0 +1,97 @@ +# -*- coding: utf-8 -*- +from typing import Optional, Any, Union + +from PyQt5.QtCore import QObject +from PyQt5.QtGui import QStandardItem, QStandardItemModel, QIcon +from PyQt5.QtWidgets import QMessageBox, QWidget, QInputDialog + + +class StandardProjectContainer(QStandardItem): + """Displayable StandardItem used for grouping sub-elements. + An internal QStandardItemModel representation is maintained for use in + other Qt elements e.g. a combo-box or list view. + """ + inherit_context = False + + def __init__(self, label: str, icon: str=None, inherit=False, **kwargs): + super().__init__(label) + if icon is not None: + self.setIcon(QIcon(icon)) + self._model = QStandardItemModel() + self.inherit_context = inherit + self.setEditable(False) + self._attributes = kwargs + + def properties(self): + print(self.__class__.__name__) + + @property + def internal_model(self) -> QStandardItemModel: + return self._model + + def appendRow(self, item: QStandardItem): + """ + Notes + ----- + The same item cannot be added to two parents as the parent attribute + is mutated when added. Use clone() or similar method to create two identical copies. + """ + super().appendRow(item) + self._model.appendRow(item.clone()) + + def removeRow(self, row: int): + super().removeRow(row) + self._model.removeRow(row) + + +class StandardFlightItem(QStandardItem): + def __init__(self, label: str, data: Optional[Any] = None, icon: Optional[str] = None, + controller: 'FlightController' = None): + super().__init__(label) + if icon is not None: + self.setIcon(QIcon(icon)) + + self.setText(label) + self._data = data + self._controller = controller # TODO: Is this used, or will it be? + # self.setData(data, QtDataRoles.UserRole + 1) + if data is not None: + self.setToolTip(str(data.uid)) + self.setEditable(False) + + @property + def menu_bindings(self): + return [ + ('addAction', ('Delete <%s>' % self.text(), + lambda: self.controller.remove_child(self._data, self.row(), True))) + ] + + @property + def uid(self): + return self._data.uid + + @property + def controller(self) -> 'FlightController': + return self._controller + + def properties(self): + print(self.__class__.__name__) + + +# TODO: Move these into dialog/helpers module +def confirm_action(title: str, message: str, + parent: Optional[Union[QWidget, QObject]]=None): + dlg = QMessageBox(QMessageBox.Question, title, message, + QMessageBox.Yes | QMessageBox.No, parent=parent) + dlg.setDefaultButton(QMessageBox.No) + dlg.exec_() + return dlg.result() == QMessageBox.Yes + + +def get_input(title: str, label: str, text: str, parent: QWidget=None): + new_text, result = QInputDialog.getText(parent, title, label, text=text) + if result: + return new_text + return False + + diff --git a/dgp/core/controllers/FlightController.py b/dgp/core/controllers/FlightController.py index e606ea6..25b779a 100644 --- a/dgp/core/controllers/FlightController.py +++ b/dgp/core/controllers/FlightController.py @@ -1,87 +1,57 @@ # -*- coding: utf-8 -*- -from typing import Optional, Any, Union +from typing import Optional, Union from PyQt5.QtCore import Qt from PyQt5.QtGui import QStandardItem, QIcon, QStandardItemModel -from core.controllers import common -from core.controllers.common import BaseProjectController, StandardProjectContainer -from core.models.flight import Flight, FlightLine, DataFile +from core.controllers import Containers +from core.controllers.Containers import StandardProjectContainer, StandardFlightItem +from core.controllers.BaseProjectController import BaseProjectController +from core.models.flight import Flight, FlightLine +from core.models.data import DataFile -from lib.enums import DataTypes +from core.types.enumerations import DataTypes - -class StandardFlightItem(QStandardItem): - def __init__(self, label: str, data: Optional[Any] = None, icon: Optional[str] = None, - controller: 'FlightController' = None): - if icon is not None: - super().__init__(QIcon(icon), label) - else: - super().__init__(label) - self.setText(label) - self._data = data - self._controller = controller # TODO: Is this used, or will it be? - # self.setData(data, QtDataRoles.UserRole + 1) - if data is not None: - self.setToolTip(str(data.uid)) - self.setEditable(False) - - @property - def menu_bindings(self): - return [ - ('addAction', ('Delete <%s>' % self.text(), lambda: self.controller.remove_child(self._data, self.row(), - True))) - ] - - @property - def uid(self): - return self._data.uid - - @property - def controller(self) -> 'FlightController': - return self._controller - - def properties(self): - print(self.__class__.__name__) +FOLDER_ICON = ":/icons/folder_open.png" class FlightController(QStandardItem): inherit_context = True - def __init__(self, flight: Flight, + def __init__(self, flight: Flight, icon: Optional[str]=None, controller: Optional[BaseProjectController]=None): """Assemble the view/controller repr from the base flight object.""" super().__init__(flight.name) + if icon is not None: + self.setIcon(QIcon(icon)) self.setEditable(False) + self.setData(flight.uid, Qt.UserRole) self._flight = flight self._project_controller = controller self._active = False - self._flight_lines = StandardProjectContainer("Flight Lines") - self._data_files = StandardProjectContainer("Data Files") + self._flight_lines = StandardProjectContainer("Flight Lines", FOLDER_ICON) + self._data_files = StandardProjectContainer("Data Files", FOLDER_ICON) self.appendRow(self._flight_lines) self.appendRow(self._data_files) - self._flight_lines_model = QStandardItemModel() - self._data_files_model = QStandardItemModel() - for item in self._flight.flight_lines: - # Distinct Items must be created for the model and the flight_lines container - # As the parent property is reassigned on appendRow self._flight_lines.appendRow(self._wrap_item(item)) - self._flight_lines_model.appendRow(self._wrap_item(item)) for item in self._flight.data_files: self._data_files.appendRow(self._wrap_item(item)) - self._data_files_model.appendRow(self._wrap_item(item)) + + # Think about multiple files, what to do? + self._active_gravity = None + self._active_trajectory = None self._bindings = [ ('addAction', ('Set Active', lambda: self.controller.set_active(self))), ('addAction', ('Import Gravity', - lambda: self.controller.load_data_file(DataTypes.GRAVITY, self._flight))), + lambda: self.controller.load_file(DataTypes.GRAVITY, self))), ('addAction', ('Import Trajectory', - lambda: self.controller.load_data_file(DataTypes.TRAJECTORY, self._flight))), + lambda: self.controller.load_file(DataTypes.TRAJECTORY, self))), ('addSeparator', ()), ('addAction', ('Delete <%s>' % self._flight.name, lambda: self.controller.remove_child(self._flight, self.row(), True))), @@ -100,10 +70,27 @@ def controller(self) -> BaseProjectController: def menu_bindings(self): return self._bindings + @property + def gravity(self): + return None + + @property + def trajectory(self): + return None + + @property + def lines_model(self) -> QStandardItemModel: + return self._flight_lines.internal_model + def is_active(self): return self.controller.active_entity == self def properties(self): + for i in range(self._data_files.rowCount()): + file = self._data_files.child(i) + if file._data.group == 'gravity': + print(file) + break print(self.__class__.__name__) def _wrap_item(self, item: Union[FlightLine, DataFile]): @@ -113,32 +100,31 @@ def add_child(self, child: Union[FlightLine, DataFile]): self._flight.add_child(child) if isinstance(child, FlightLine): self._flight_lines.appendRow(self._wrap_item(child)) - self._flight_lines_model.appendRow(self._wrap_item(child)) elif isinstance(child, DataFile): self._data_files.appendRow(self._wrap_item(child)) - self._flight_lines_model.appendRow(self._wrap_item(child)) def remove_child(self, child: Union[FlightLine, DataFile], row: int, confirm: bool=True) -> None: if confirm: - if not common.confirm_action("Confirm Deletion", "Are you sure you want to delete %s" % str(child)): + if not Containers.confirm_action("Confirm Deletion", "Are you sure you want to delete %s" % str(child), + self.controller.get_parent()): return self._flight.remove_child(child) if isinstance(child, FlightLine): self._flight_lines.removeRow(row) - self._flight_lines_model.removeRow(row) elif isinstance(child, DataFile): self._data_files.removeRow(row) - self._data_files_model.removeRow(row) - - def get_flight_line_model(self): - """Return a QStandardItemModel containing all Flight-Lines in this flight""" - return self._flight_lines_model def set_name(self): - name = common.get_input("Set Name", "Enter a new name:", self._flight.name) + name = Containers.get_input("Set Name", "Enter a new name:", self._flight.name) if name: self._flight.name = name self.setData(name, role=Qt.DisplayRole) def __hash__(self): return hash(self._flight.uid) + + def __getattr__(self, key): + return getattr(self._flight, key) + + def __str__(self): + return "" % (self._flight.name, repr(self._flight.uid)) diff --git a/dgp/core/controllers/HDFController.py b/dgp/core/controllers/HDFController.py new file mode 100644 index 0000000..1f06093 --- /dev/null +++ b/dgp/core/controllers/HDFController.py @@ -0,0 +1,178 @@ +# -*- coding: utf-8 -*- +import logging +from pathlib import Path +from typing import Tuple +from uuid import uuid4 + +import tables +from pandas import HDFStore, DataFrame + +__all__ = ['HDF5', 'HDFController'] + +# Define Data Types/Extensions +HDF5 = 'hdf5' +HDF5_NAME = 'dgpdata.hdf5' + + +class HDFController: + """ + Do not instantiate this class directly. Call the module init() method + DataManager is designed to be a singleton class that is initialized and + stored within the module level var 'manager', other modules can then + request a reference to the instance via get_manager() and use the class + to load and save data. + This is similar in concept to the Python Logging + module, where the user can call logging.getLogger() to retrieve a global + root logger object. + The DataManager will be responsible for most if not all data IO, + providing a centralized interface to _store, retrieve, and export data. + To track the various data files that the DataManager manages, a JSON + registry is maintained within the project/data directory. This JSON + registry is updated and queried for relative file paths, and may also be + used to _store mappings of uid -> file for individual blocks of data. + """ + + def __init__(self, root_path, mkdir: bool = True): + self.log = logging.getLogger(__name__) + self.dir = Path(root_path) + if not self.dir.exists() and mkdir: + self.dir.mkdir(parents=True) + # TODO: Consider searching by extension (.hdf5 .h5) for hdf5 datafile + self._path = self.dir.joinpath(HDF5_NAME) + self._path.touch(exist_ok=True) + self._cache = {} + self.log.debug("DataStore initialized.") + + @property + def hdf5path(self) -> Path: + return self._path + + @hdf5path.setter + def hdf5path(self, value): + value = Path(value) + if not value.exists(): + raise FileNotFoundError + else: + self._path = value + + @staticmethod + def join_path(flightid, grpid, uid): + return '/'.join(map(str, ['', flightid, grpid, uid])) + + def save_data(self, data: DataFrame, flightid: str, grpid: str, + uid=None, **kwargs) -> Tuple[str, str, str, str]: + """ + Save a Pandas Series or DataFrame to the HDF5 Store + Data is added to the local cache, keyed by its generated UID. + The generated UID is passed back to the caller for later reference. + This function serves as a dispatch mechanism for different data types. + e.g. To dump a pandas DataFrame into an HDF5 _store: + >>> df = DataFrame() + >>> uid = HDFController().save_data(df) + The DataFrame can later be loaded by calling load_data, e.g. + >>> df = HDFController().load_data(uid) + + Parameters + ---------- + data: Union[DataFrame, Series] + Data object to be stored on disk via specified format. + flightid: String + grpid: String + Data group (Gravity/Trajectory etc) + uid: String + kwargs: + Optional Metadata attributes to attach to the data node + + Returns + ------- + str: + Generated UID assigned to data object saved. + """ + + if uid is None: + uid = str(uuid4().hex) + + self._cache[uid] = data + + # Generate path as /{flight_uid}/{grp_id}/uid + path = self.join_path(flightid, grpid, uid) + + with HDFStore(str(self.hdf5path)) as hdf: + try: + hdf.put(path, data, format='fixed', data_columns=True) + except (IOError, FileNotFoundError, PermissionError): + self.log.exception("Exception writing file to HDF5 _store.") + raise + else: + self.log.info("Wrote file to HDF5 _store at node: %s", path) + + return flightid, grpid, uid, path + + def load_data(self, flightid, grpid, uid): + """ + Load data from a managed repository by UID + This public method is a dispatch mechanism that calls the relevant + loader based on the data type of the data represented by UID. + This method will first check the local cache for UID, and if the key + is not located, will load it from the HDF5 Data File. + + Parameters + ---------- + flightid: String + grpid: String + uid: String + UID of stored date to retrieve. + + Returns + ------- + Union[DataFrame, Series, dict] + Data retrieved from _store. + + Raises + ------ + KeyError + If data key (/flightid/grpid/uid) does not exist + """ + + if uid in self._cache: + self.log.info("Loading data {} from cache.".format(uid)) + return self._cache[uid] + else: + path = self.join_path(flightid, grpid, uid) + self.log.debug("Loading data %s from hdf5 _store.", path) + + with HDFStore(str(self.hdf5path)) as hdf: + data = hdf.get(path) + + # Cache the data + self._cache[uid] = data + return data + + # See https://www.pytables.org/usersguide/libref/file_class.html#tables.File.set_node_attr + # For more details on setting/retrieving metadata from hdf5 file using pytables + # Note that the _v_ and _f_ prefixes are meant for instance variables and public methods + # within pytables - so the inspection warning can be safely ignored + + def get_node_attrs(self, path) -> list: + with tables.open_file(str(self.hdf5path)) as hdf: + try: + return hdf.get_node(path)._v_attrs._v_attrnames + except tables.exceptions.NoSuchNodeError: + raise ValueError("Specified path %s does not exist.", path) + + def _get_node_attr(self, path, attrname): + with tables.open_file(str(self.hdf5path)) as hdf: + try: + return hdf.get_node_attr(path, attrname) + except AttributeError: + return None + + def _set_node_attr(self, path, attrname, value): + with tables.open_file(str(self.hdf5path), 'a') as hdf: + try: + hdf.set_node_attr(path, attrname, value) + except tables.exceptions.NoSuchNodeError: + self.log.error("Unable to set attribute on path: %s key does not exist.") + raise KeyError("Node %s does not exist", path) + else: + return True diff --git a/dgp/core/controllers/MeterController.py b/dgp/core/controllers/MeterController.py index 40532a6..b7e77bc 100644 --- a/dgp/core/controllers/MeterController.py +++ b/dgp/core/controllers/MeterController.py @@ -4,13 +4,14 @@ from PyQt5.QtCore import Qt from PyQt5.QtGui import QStandardItem -from . import common +from core.controllers.BaseProjectController import BaseProjectController +from . import Containers from core.models.meter import Gravimeter class GravimeterController(QStandardItem): def __init__(self, meter: Gravimeter, - controller: Optional[common.BaseProjectController]=None): + controller: Optional[BaseProjectController]=None): super().__init__(meter.name) self.setEditable(False) @@ -28,7 +29,7 @@ def entity(self) -> Gravimeter: return self._meter @property - def controller(self) -> common.BaseProjectController: + def controller(self) -> BaseProjectController: return self._project_controller @property @@ -42,7 +43,7 @@ def remove_child(self, child, row: int) -> None: pass def set_name(self): - name = common.get_input("Set Name", "Enter a new name:", self._meter.name) + name = Containers.get_input("Set Name", "Enter a new name:", self._meter.name) if name: self._meter.name = name self.setData(name, role=Qt.DisplayRole) diff --git a/dgp/core/controllers/ProjectController.py b/dgp/core/controllers/ProjectController.py index b21aa1a..86a9dbb 100644 --- a/dgp/core/controllers/ProjectController.py +++ b/dgp/core/controllers/ProjectController.py @@ -1,34 +1,67 @@ # -*- coding: utf-8 -*- +import functools +import inspect import logging import shlex import sys +from pathlib import Path from weakref import WeakSet -from typing import Optional, Union, Generator +from typing import Optional, Union, Generator, Callable, Any -from PyQt5.QtCore import Qt, QProcess -from PyQt5.QtGui import QStandardItem, QBrush, QColor +from PyQt5.QtCore import Qt, QProcess, QThread, pyqtSignal, QObject, pyqtSlot +from PyQt5.QtGui import QStandardItem, QBrush, QColor, QStandardItemModel, QIcon +from pandas import DataFrame -from core.controllers import common +from core.controllers import Containers from core.controllers.FlightController import FlightController from core.controllers.MeterController import GravimeterController -from core.controllers.common import StandardProjectContainer, BaseProjectController, confirm_action -from core.models.flight import Flight, DataFile +from core.controllers.Containers import StandardProjectContainer, confirm_action +from core.controllers.BaseProjectController import BaseProjectController +from core.models.data import DataFile +from core.models.flight import Flight from core.models.meter import Gravimeter from core.models.project import GravityProject, AirborneProject from core.oid import OID +from core.types.enumerations import DataTypes from gui.dialogs import AdvancedImportDialog -from lib.enums import DataTypes +from lib.etc import align_frames +from lib.gravity_ingestor import read_at1a +from lib.trajectory_ingestor import import_trajectory BASE_COLOR = QBrush(QColor('white')) ACTIVE_COLOR = QBrush(QColor(108, 255, 63)) +FLT_ICON = ":/icons/airborne" + + +class FileLoader(QThread): + completed = pyqtSignal(DataFrame, Path) + error = pyqtSignal(str) + + def __init__(self, path: Path, method: Callable, parent, **kwargs): + super().__init__(parent=parent) + self._path = Path(path) + self._method = method + self._kwargs = kwargs + + def run(self): + try: + sig = inspect.signature(self._method) + kwargs = {k: v for k, v in self._kwargs.items() if k in sig.parameters} + result = self._method(str(self._path), **kwargs) + except Exception as e: + self.error.emit(e) + else: + self.completed.emit(result, self._path) class AirborneProjectController(BaseProjectController): - def __init__(self, project: AirborneProject): + def __init__(self, project: AirborneProject, parent: QObject = None): super().__init__(project) + self._parent = parent + self.setIcon(QIcon(":/icons/dgs")) self.log = logging.getLogger(__name__) - self.flights = StandardProjectContainer("Flights") + self.flights = StandardProjectContainer("Flights", FLT_ICON) self.appendRow(self.flights) self.meters = StandardProjectContainer("Gravimeters") @@ -56,6 +89,10 @@ def __init__(self, project: AirborneProject): def properties(self): print(self.__class__.__name__) + @property + def menu_bindings(self): + return self._bindings + @property def flight_ctrls(self) -> Generator[FlightController, None, None]: for ctrl in self._flight_ctrl: @@ -70,8 +107,17 @@ def meter_ctrls(self) -> Generator[GravimeterController, None, None]: def project(self) -> Union[GravityProject, AirborneProject]: return super().project + @property + def flight_model(self) -> QStandardItemModel: + return self.flights.internal_model + + @property + def meter_model(self) -> QStandardItemModel: + return self.meters.internal_model + def add_child(self, child: Union[Flight, Gravimeter]): self.project.add_child(child) + self.update() if isinstance(child, Flight): controller = FlightController(child, controller=self) self._flight_ctrl.add(controller) @@ -80,16 +126,9 @@ def add_child(self, child: Union[Flight, Gravimeter]): controller = GravimeterController(child, controller=self) self._meter_ctrl.add(controller) self.meters.appendRow(controller) - - def get_child_controller(self, child: Union[Flight, Gravimeter]): - ctrl_map = {Flight: self.flight_ctrls, Gravimeter: self.meter_ctrls} - ctrls = ctrl_map.get(type(child), None) - if ctrls is None: - return None - - for ctrl in ctrls: - if ctrl.entity.uid == child.uid: - return ctrl + else: + return + return controller def remove_child(self, child: Union[Flight, Gravimeter], row: int, confirm=True): if confirm: @@ -98,22 +137,34 @@ def remove_child(self, child: Union[Flight, Gravimeter], row: int, confirm=True) return self.project.remove_child(child.uid) + self.update() if isinstance(child, Flight): self.flights.removeRow(row) elif isinstance(child, Gravimeter): self.meters.removeRow(row) - def set_active(self, entity: FlightController): - if isinstance(entity, FlightController): - self._active = entity + def get_child_controller(self, child: Union[Flight, Gravimeter]): + ctrl_map = {Flight: self.flight_ctrls, Gravimeter: self.meter_ctrls} + ctrls = ctrl_map.get(type(child), None) + if ctrls is None: + return None + + for ctrl in ctrls: + if ctrl.entity.uid == child.uid: + return ctrl + + def set_active(self, controller: FlightController, emit: bool = True): + if isinstance(controller, FlightController): + self._active = controller for ctrl in self._flight_ctrl: # type: QStandardItem ctrl.setBackground(BASE_COLOR) - entity.setBackground(ACTIVE_COLOR) - self.model().flight_changed.emit(entity) + controller.setBackground(ACTIVE_COLOR) + if emit: + self.model().flight_changed.emit(controller) def set_name(self): - new_name = common.get_input("Set Project Name", "Enter a Project Name", self.project.name) + new_name = Containers.get_input("Set Project Name", "Enter a Project Name", self.project.name) if new_name: self.project.name = new_name self.setData(new_name, Qt.DisplayRole) @@ -133,30 +184,104 @@ def show_in_explorer(self): QProcess.startDetached(script, shlex.split(args)) - def load_data_file(self, _type: DataTypes, flight: Optional[Flight] = None, browse=True): - dialog = AdvancedImportDialog(self.project, flight, _type.value) + def update(self): + """Emit an update event from the parent Model, signalling that + data has been added/removed/modified in the project.""" + self.model().project_changed.emit() + + @pyqtSlot(DataFrame, Path, name='_post_load') + def _post_load(self, flight: FlightController, data: DataFrame, src_path: Path): + try: + fltid, grpid, uid, path = self.hdf5store.save_data(data, flight.uid.base_uuid, 'gravity') + except IOError: + self.log.exception("Error writing data to HDF5 file.") + else: + datafile = DataFile(hdfpath=path, label='', group=grpid, source_path=src_path, uid=uid) + flight.add_child(datafile) + + return + + # TODO: Implement align_frames functionality as below + + gravity = flight.gravity + trajectory = flight.trajectory + if gravity is not None and trajectory is not None: + # align and crop the gravity and trajectory frames + + from lib.gravity_ingestor import DGS_AT1A_INTERP_FIELDS + from lib.trajectory_ingestor import TRAJECTORY_INTERP_FIELDS + + fields = DGS_AT1A_INTERP_FIELDS | TRAJECTORY_INTERP_FIELDS + new_gravity, new_trajectory = align_frames(gravity, trajectory, + interp_only=fields) + + # TODO: Fix this mess + # replace datasource objects + ds_attr = {'path': gravity.filename, 'dtype': gravity.dtype} + flight.remove_data(gravity) + self._add_data(new_gravity, ds_attr['dtype'], flight, + ds_attr['path']) + + ds_attr = {'path': trajectory.filename, + 'dtype': trajectory.dtype} + flight.remove_data(trajectory) + self._add_data(new_trajectory, ds_attr['dtype'], flight, + ds_attr['path']) + + def load_file(self, ftype: DataTypes, destination: Optional[FlightController] = None, browse=True): + dialog = AdvancedImportDialog(self, destination, ftype.value) if browse: dialog.browse() if dialog.exec_(): + flt_uid = dialog.flight # type: OID + fc = self.get_child_controller(flt_uid.reference) + if fc is None: + # Error + return - print("Loading file") - controller = self.get_child_controller(dialog.flight) - print("Got controller: " + str(controller)) - print("Controller flight: " + controller.entity.name) - # controller = self.flight_ctrls[dialog.flight.uid] - # controller.add_child(DataFile('%s/%s/' % (flight.uid.base_uuid, _type.value.lower()), 'NoLabel', - # _type.value.lower(), dialog.path)) + if ftype == DataTypes.GRAVITY: + method = read_at1a + elif ftype == DataTypes.TRAJECTORY: + method = import_trajectory + else: + print("Unknown datatype %s" % str(ftype)) + return + # Note loader must be passed a QObject parent or it will crash + loader = FileLoader(dialog.path, method, parent=self._parent, **dialog.params) + loader.completed.connect(functools.partial(self._post_load, fc)) - # TODO: Actually load the file (should we use a worker queue for loading?) + loader.start() - @property - def menu_bindings(self): - return self._bindings + # self.update() + + # Old code from Main: (for reference) + + # prog = self.show_progress_status(0, 0) + # prog.setValue(1) + + # def _on_err(result): + # err, exc = result + # prog.close() + # if err: + # msg = "Error loading {typ}::{fname}".format( + # typ=dtype.name.capitalize(), fname=params.get('path', '')) + # self.log.error(msg) + # else: + # msg = "Loaded {typ}::{fname}".format( + # typ=dtype.name.capitalize(), fname=params.get('path', '')) + # self.log.info(msg) + # + # ld = loader.get_loader(parent=self, dtype=dtype, on_complete=self._post_load, + # on_error=_on_err, **params) + # ld.start() class MarineProjectController(BaseProjectController): - def set_active(self, entity): + def load_file(self, ftype, destination: Optional[Any] = None) -> None: + pass + + def set_active(self, entity, **kwargs): pass def add_child(self, child): diff --git a/dgp/core/models/ProjectTreeModel.py b/dgp/core/models/ProjectTreeModel.py index 08118bf..d72335b 100644 --- a/dgp/core/models/ProjectTreeModel.py +++ b/dgp/core/models/ProjectTreeModel.py @@ -5,7 +5,7 @@ from PyQt5.QtGui import QStandardItemModel from core.controllers.FlightController import FlightController -from core.controllers.common import BaseProjectController +from core.controllers.BaseProjectController import BaseProjectController __all__ = ['ProjectTreeModel'] @@ -17,6 +17,8 @@ class ProjectTreeModel(QStandardItemModel): All signals/events should be connected via the model vs the View itself. """ flight_changed = pyqtSignal(FlightController) + # Fired on any project mutation - can be used to autosave + project_changed = pyqtSignal() def __init__(self, root: BaseProjectController, parent: Optional[QObject]=None): super().__init__(parent) diff --git a/dgp/core/models/data.py b/dgp/core/models/data.py new file mode 100644 index 0000000..faabdfe --- /dev/null +++ b/dgp/core/models/data.py @@ -0,0 +1,31 @@ +# -*- encoding: utf-8 -*- +from pathlib import Path +from typing import Optional + +from core.oid import OID + + +class DataFile: + __slots__ = '_uid', '_hdfpath', '_label', '_group', '_source_path', '_column_format' + + def __init__(self, hdfpath: str, label: str, group: str, source_path: Optional[Path] = None, + column_format=None, uid: Optional[str] = None): + self._uid = OID(self, _uid=uid) + self._hdfpath = hdfpath + self._label = label + self._group = group + self._source_path = source_path + self._column_format = column_format + + @property + def uid(self) -> OID: + return self._uid + + @property + def group(self) -> str: + return self._group + + def __str__(self): + return "(%s) %s :: %s" % (self._group, self._label, self._hdfpath) + + diff --git a/dgp/core/models/flight.py b/dgp/core/models/flight.py index e60e7f3..b6588e5 100644 --- a/dgp/core/models/flight.py +++ b/dgp/core/models/flight.py @@ -1,7 +1,8 @@ # -*- coding: utf-8 -*- -from pathlib import Path -from typing import List, Optional, Any, Dict, Union +from datetime import datetime +from typing import List, Optional, Union +from core.models.data import DataFile from .meter import Gravimeter from ..oid import OID @@ -10,7 +11,7 @@ class FlightLine: __slots__ = '_uid', '_start', '_stop', '_sequence' def __init__(self, start: float, stop: float, sequence: int, - uid: Optional[str]=None): + uid: Optional[str] = None): self._uid = OID(self, _uid=uid) self._start = start @@ -45,51 +46,22 @@ def __str__(self): return "Line %d :: %.4f (start) %.4f (end)" % (self.sequence, self.start, self.stop) -class DataFile: - __slots__ = '_uid', '_path', '_label', '_group', '_source_path', '_column_format' - - def __init__(self, hdfpath: str, label: str, group: str, source_path: Optional[Path]=None, - uid: Optional[str]=None, **kwargs): - self._uid = OID(self, _uid=uid) - self._path = hdfpath - self._label = label - self._group = group - self._source_path = source_path - self._column_format = None - - def load(self): - try: - pass - # store.load_data() - except AttributeError: - return None - return None - - @property - def uid(self) -> OID: - return self._uid - - def __str__(self): - return "(%s) %s :: %s" % (self._group, self._label, self._path) - - class Flight: """ Version 2 Flight Class - Designed to be de-coupled from the view implementation Define a Flight class used to record and associate data with an entire survey flight (takeoff -> landing) - This class is iterable, yielding the flightlines named tuple objects from - its lines dictionary """ - __slots__ = '_uid', '_name', '_flight_lines', '_data_files', '_meters' + __slots__ = '_uid', '_name', '_flight_lines', '_data_files', '_meters', '_date' - def __init__(self, name: str, uid: Optional[str]=None, **kwargs): + def __init__(self, name: str, date: datetime = None, uid: Optional[str] = None, **kwargs): self._uid = OID(self, tag=name, _uid=uid) self._name = name self._flight_lines = kwargs.get('flight_lines', []) # type: List[FlightLine] self._data_files = kwargs.get('data_files', []) # type: List[DataFile] self._meters = kwargs.get('meters', []) # type: List[OID] + self._date = date @property def name(self) -> str: @@ -138,32 +110,3 @@ def __str__(self) -> str: def __repr__(self) -> str: return '' % (self.name, self.uid) - - # @classmethod - # def from_dict(cls, mapping: Dict[str, Any]) -> 'Flight': - # # assert mapping.pop('_type') == cls.__name__ - # flt_lines = mapping.pop('_flight_lines') - # flt_meters = mapping.pop('_meters') - # flt_data = mapping.pop('_data_files') - # - # params = {} - # for key, value in mapping.items(): - # param_key = key[1:] if key.startswith('_') else key - # params[param_key] = value - # - # klass = cls(**params) - # for line in flt_lines: - # # assert 'FlightLine' == line.pop('_type') - # flt_line = FlightLine(**{key[1:]: value for key, value in line.items()}) - # klass.add_child(flt_line) - # - # for file in flt_data: - # data_file = DataFile(**file) - # klass.add_child(data_file) - # - # for meter in flt_meters: - # # Should meters in a flight just be a UID reference to global meter configs? - # meter_cfg = Gravimeter(**meter) - # klass.add_child(meter_cfg) - # - # return klass diff --git a/dgp/core/models/meter.py b/dgp/core/models/meter.py index 6127cc1..f097281 100644 --- a/dgp/core/models/meter.py +++ b/dgp/core/models/meter.py @@ -3,6 +3,8 @@ """ New pure data class for Meter configurations """ +import configparser +import os from typing import Optional from ..oid import OID @@ -27,3 +29,56 @@ def name(self) -> str: def name(self, value: str) -> None: # ToDo: Regex validation? self._name = value + + # TODO: Old methods from meterconfig - evaluate and reconfigure + @staticmethod + def get_valid_fields(): + # Sensor fields + sensor_fields = ['g0', 'GravCal', 'LongCal', 'CrossCal', 'LongOffset', 'CrossOffset', 'stempgain', + 'Temperature', 'stempoffset', 'pressgain', 'presszero', 'beamgain', 'beamzero', + 'Etempgain', 'Etempzero'] + # Cross coupling Fields + cc_fields = ['vcc', 've', 'al', 'ax', 'monitors'] + + # Platform Fields + platform_fields = ['Cross_Damping', 'Cross_Periode', 'Cross_Lead', 'Cross_Gain', 'Cross_Comp', + 'Cross_Phcomp', 'Cross_sp', 'Long_Damping', 'Long_Periode', 'Long_Lead', 'Long_Gain', + 'Long_Comp', 'Long_Phcomp', 'Long_sp', 'zerolong', 'zerocross', 'CrossSp', 'LongSp'] + + # Create a set with all unique and valid field keys + return set().union(sensor_fields, cc_fields, platform_fields) + + @staticmethod + def process_config(valid_fields, **config): + """Return a config dictionary by filtering out invalid fields, and lower-casing all keys""" + def cast(value): + try: + return float(value) + except ValueError: + return value + + return {k.lower(): cast(v) for k, v in config.items() if k.lower() in map(str.lower, valid_fields)} + + @staticmethod + def from_ini(path): + """ + Read an AT1 Meter Configuration from a meter ini file + :param path: path to meter ini file + :return: instance of AT1Meter with configuration set by ini file + """ + if not os.path.exists(path): + raise OSError("Invalid path to ini.") + config = configparser.ConfigParser(strict=False) + config.read(path) + + sensor_fld = dict(config['Sensor']) + xcoupling_fld = dict(config['crosscouplings']) + platform_fld = dict(config['Platform']) + + name = str.strip(sensor_fld['meter'], '"') + + merge_config = {**sensor_fld, **xcoupling_fld, **platform_fld} + # at1config = AT1Meter.process_config(AT1Meter.get_valid_fields(), **merge_config) + # return AT1Meter(name, **at1config) + + diff --git a/dgp/core/models/project.py b/dgp/core/models/project.py index 7b280b8..ba134e4 100644 --- a/dgp/core/models/project.py +++ b/dgp/core/models/project.py @@ -41,6 +41,7 @@ def __init__(self, name: str, path: Union[Path, str], description: Optional[str] self._uid = OID(self, tag=name, _uid=uid) self._name = name self._path = path + self._projectfile = 'dgp.json' self._description = description self._create_date = datetime.fromtimestamp(create_date) self._modify_date = datetime.fromtimestamp(kwargs.get('modify_date', @@ -167,7 +168,15 @@ def object_hook(cls, json_o: Dict): def from_json(cls, json_str: str) -> 'GravityProject': return json.loads(json_str, object_hook=cls.object_hook) - def to_json(self, indent=None) -> str: + def to_json(self, to_file=False, indent=None) -> Union[str, bool]: + if to_file: + try: + with self.path.joinpath(self._projectfile).open('w') as fp: + json.dump(self, fp, cls=ProjectEncoder, indent=indent) + except IOError: + raise + else: + return True return json.dumps(self, cls=ProjectEncoder, indent=indent) diff --git a/dgp/core/oid.py b/dgp/core/oid.py index b58ed1a..906696c 100644 --- a/dgp/core/oid.py +++ b/dgp/core/oid.py @@ -19,7 +19,7 @@ def __init__(self, obj, tag: Optional[str]=None, _uid: str=None): if _uid is not None: assert len(_uid) == 32 self._base_uuid = _uid or uuid4().hex - self._group = obj.__class__.__name__[0:5].lower() + self._group = obj.__class__.__name__[0:6].lower() self._uuid = '{}_{}'.format(self._group, self._base_uuid) self._tag = tag self._pointer = obj diff --git a/dgp/core/types/__init__.py b/dgp/core/types/__init__.py new file mode 100644 index 0000000..e69de29 diff --git a/dgp/core/types/enumerations.py b/dgp/core/types/enumerations.py new file mode 100644 index 0000000..41a68a3 --- /dev/null +++ b/dgp/core/types/enumerations.py @@ -0,0 +1,113 @@ +# -*- coding: utf-8 -*- + +import enum +import logging + +""" +Dynamic Gravity Processor (DGP) :: lib/enumerations.py +License: Apache License V2 + +Overview: +enumerations.py consolidates various enumeration structures used throughout the project + +Compatibility: +As we are still currently targetting Python 3.5 the following Enum classes +cannot be used - they are not introduced until Python 3.6 + +- enum.Flag +- enum.IntFlag +- enum.auto + +""" + + +LOG_LEVEL_MAP = {'debug': logging.DEBUG, 'info': logging.INFO, + 'warning': logging.WARNING, 'error': logging.ERROR, + 'critical': logging.CRITICAL} + + +class LogColors(enum.Enum): + DEBUG = 'blue' + INFO = 'yellow' + WARNING = 'brown' + ERROR = 'red' + CRITICAL = 'orange' + + +class ProjectTypes(enum.Enum): + AIRBORNE = 'airborne' + MARINE = 'marine' + + +class MeterTypes(enum.Enum): + """Gravity Meter Types""" + AT1A = 'at1a' + AT1M = 'at1m' + ZLS = 'zls' + TAGS = 'tags' + + +class DataTypes(enum.Enum): + """Gravity/Trajectory Data Types""" + GRAVITY = 'gravity' + TRAJECTORY = 'trajectory' + + +class GravityTypes(enum.Enum): + # TODO: add set of fields specific to each dtype + AT1A = ('gravity', 'long_accel', 'cross_accel', 'beam', 'temp', 'status', + 'pressure', 'Etemp', 'gps_week', 'gps_sow') + AT1M = ('at1m',) + ZLS = ('line_name', 'year', 'day', 'hour', 'minute', 'second', 'sensor', + 'spring_tension', 'cross_coupling', 'raw_beam', 'vcc', 'al', 'ax', + 've2', 'ax2', 'xacc2', 'lacc2', 'xacc', 'lacc', 'par_port', + 'platform_period') + TAGS = ('tags', ) + + +# TODO: I don't like encoding the field tuples in enum - do a separate lookup? +class GPSFields(enum.Enum): + sow = ('week', 'sow', 'lat', 'long', 'ell_ht') + hms = ('mdy', 'hms', 'lat', 'long', 'ell_ht') + serial = ('datenum', 'lat', 'long', 'ell_ht') + + +class QtItemFlags(enum.IntEnum): + """Qt Item Flags""" + NoItemFlags = 0 + ItemIsSelectable = 1 + ItemIsEditable = 2 + ItemIsDragEnabled = 4 + ItemIsDropEnabled = 8 + ItemIsUserCheckable = 16 + ItemIsEnabled = 32 + ItemIsTristate = 64 + + +class QtDataRoles(enum.IntEnum): + """Qt Item Data Roles""" + # Data to be rendered as text (QString) + DisplayRole = 0 + # Data to be rendered as decoration (QColor, QIcon, QPixmap) + DecorationRole = 1 + # Data displayed in edit mode (QString) + EditRole = 2 + # Data to be displayed in a tooltip on hover (QString) + ToolTipRole = 3 + # Data to be displayed in the status bar on hover (QString) + StatusTipRole = 4 + WhatsThisRole = 5 + # Font used by the delegate to render this item (QFont) + FontRole = 6 + TextAlignmentRole = 7 + # Background color used to render this item (QBrush) + BackgroundRole = 8 + # Foreground or font color used to render this item (QBrush) + ForegroundRole = 9 + CheckStateRole = 10 + SizeHintRole = 13 + InitialSortOrderRole = 14 + + UserRole = 32 + UIDRole = 33 + diff --git a/dgp/core/views/ProjectTreeView.py b/dgp/core/views/ProjectTreeView.py index 3cbd9b1..ccafd20 100644 --- a/dgp/core/views/ProjectTreeView.py +++ b/dgp/core/views/ProjectTreeView.py @@ -26,7 +26,8 @@ def __init__(self, parent: Optional[QObject]=None): self.setContextMenuPolicy(QtCore.Qt.DefaultContextMenu) self._action_refs = [] - def _clear_signal(self, signal: pyqtBoundSignal): + @staticmethod + def _clear_signal(signal: pyqtBoundSignal): while True: try: signal.disconnect() @@ -43,7 +44,7 @@ def setModel(self, model: ProjectTreeModel): self.doubleClicked.connect(self._on_double_click) self.doubleClicked.connect(self.model().on_double_click) - @pyqtSlot(QModelIndex) + @pyqtSlot(QModelIndex, name='_on_double_click') def _on_double_click(self, index: QModelIndex): """Selectively expand/collapse an item depending on its active state""" item = self.model().itemFromIndex(index) diff --git a/tests/test_project_controllers.py b/tests/test_project_controllers.py new file mode 100644 index 0000000..40a96af --- /dev/null +++ b/tests/test_project_controllers.py @@ -0,0 +1 @@ +# -*- coding: utf-8 -*- diff --git a/tests/test_project_models.py b/tests/test_project_models.py new file mode 100644 index 0000000..e19196c --- /dev/null +++ b/tests/test_project_models.py @@ -0,0 +1,214 @@ +# -*- coding: utf-8 -*- + +""" +Unit tests for new Project/Flight data classes, including JSON +serialization/de-serialization +""" +import json +import time +from pathlib import Path +from pprint import pprint + +import pytest +from core.models import project, flight +from core.models.meter import Gravimeter + + +@pytest.fixture() +def make_flight(): + def _factory(name): + return flight.Flight(name) + return _factory + + +@pytest.fixture() +def make_line(): + seq = 0 + + def _factory(start, stop): + nonlocal seq + seq += 1 + return flight.FlightLine(start, stop, seq) + return _factory + + +def test_flight_actions(make_flight, make_line): + flt = flight.Flight('test_flight') + assert 'test_flight' == flt.name + + f1 = make_flight('Flight-1') # type: flight.Flight + f2 = make_flight('Flight-2') # type: flight.Flight + + assert 'Flight-1' == f1.name + assert 'Flight-2' == f2.name + + assert not f1.uid == f2.uid + + line1 = make_line(0, 10) # type: flight.FlightLine + line2 = make_line(11, 21) # type: flight.FlightLine + + assert not line1.sequence == line2.sequence + + assert 0 == len(f1.flight_lines) + assert 0 == len(f2.flight_lines) + + f1.add_child(line1) + assert 1 == len(f1.flight_lines) + + with pytest.raises(ValueError): + f1.add_child('not a flight line') + + assert line1 in f1.flight_lines + + f1.remove_child(line1.uid) + assert line1 not in f1.flight_lines + + f1.add_child(line1) + f1.add_child(line2) + + assert line1 in f1.flight_lines + assert line2 in f1.flight_lines + assert 2 == len(f1.flight_lines) + + assert '' % f1.uid == repr(f1) + + +def test_project_actions(): + # TODO: test add/get/remove child + pass + + +def test_project_attr(make_flight): + prj_path = Path('./project-1') + prj = project.AirborneProject(name="Project-1", path=prj_path, + description="Test Project 1") + assert "Project-1" == prj.name + assert prj_path == prj.path + assert "Test Project 1" == prj.description + + prj.set_attr('tie_value', 1234) + assert 1234 == prj.tie_value + assert 1234 == prj['tie_value'] + assert 1234 == prj.get_attr('tie_value') + + prj.set_attr('_my_private_val', 2345) + assert 2345 == prj._my_private_val + assert 2345 == prj['_my_private_val'] + assert 2345 == prj.get_attr('_my_private_val') + + flt1 = make_flight('flight-1') + prj.add_child(flt1) + # assert flt1.parent == prj.uid + + +def test_project_get_child(make_flight): + prj = project.AirborneProject(name="Project-2", path=Path('.')) + f1 = make_flight('Flt-1') + f2 = make_flight('Flt-2') + f3 = make_flight('Flt-3') + prj.add_child(f1) + prj.add_child(f2) + prj.add_child(f3) + + assert f1 == prj.get_child(f1.uid) + assert f3 == prj.get_child(f3.uid) + assert not f2 == prj.get_child(f1.uid) + + +def test_project_remove_child(make_flight): + prj = project.AirborneProject(name="Project-3", path=Path('.')) + f1 = make_flight('Flt-1') + f2 = make_flight('Flt-2') + f3 = make_flight('Flt-3') + + prj.add_child(f1) + prj.add_child(f2) + + assert 2 == len(prj.flights) + assert f1 in prj.flights + assert f2 in prj.flights + assert f3 not in prj.flights + + assert not prj.remove_child(f3.uid) + assert prj.remove_child(f1.uid) + + assert f1 not in prj.flights + assert 1 == len(prj.flights) + + +def test_project_serialize(make_flight, make_line): + prj_path = Path('./prj-1') + prj = project.AirborneProject(name="Project-3", path=prj_path, + description="Test Project Serialization") + f1 = make_flight('flt1') # type: flight.Flight + line1 = make_line(0, 10) # type: # flight.FlightLine + data1 = flight.DataFile('/%s' % f1.uid.base_uuid, 'df1', 'gravity') + f1.add_child(line1) + f1.add_child(data1) + prj.add_child(f1) + + prj.set_attr('start_tie_value', 1234.90) + prj.set_attr('end_tie_value', 987.123) + + encoded = prj.to_json(indent=4) + + decoded_dict = json.loads(encoded) + # TODO: Test that all params are there + + +def test_project_deserialize(make_flight, make_line): + attrs = { + 'attr1': 12345, + 'attr2': 192.201, + 'attr3': False, + 'attr4': "Notes on project" + + } + prj = project.AirborneProject(name="SerializeTest", path=Path('./prj1'), + description="Test DeSerialize") + + for key, value in attrs.items(): + prj.set_attr(key, value) + + assert attrs == prj._attributes + + f1 = make_flight("Flt1") # type: flight.Flight + f2 = make_flight("Flt2") + line1 = make_line(0, 10) # type: flight.FlightLine + line2 = make_line(11, 20) + f1.add_child(line1) + f1.add_child(line2) + + prj.add_child(f1) + prj.add_child(f2) + + mtr = Gravimeter('AT1M-X') + prj.add_child(mtr) + + serialized = prj.to_json(indent=4) + time.sleep(0.25) # Fuzz for modification date + prj_deserialized = project.AirborneProject.from_json(serialized) + re_serialized = prj_deserialized.to_json(indent=4) + assert serialized == re_serialized + + assert attrs == prj_deserialized._attributes + assert prj.creation_time == prj_deserialized.creation_time + + flt_names = [flt.name for flt in prj_deserialized.flights] + assert "Flt1" in flt_names + assert "Flt2" in flt_names + + f1_reconstructed = prj_deserialized.get_child(f1.uid) + assert f1.uid in [flt.uid for flt in prj_deserialized.flights] + assert 2 == len(prj_deserialized.flights) + prj_deserialized.remove_child(f1_reconstructed.uid) + assert 1 == len(prj_deserialized.flights) + assert f1.uid not in [flt.uid for flt in prj_deserialized.flights] + assert f1_reconstructed.name == f1.name + assert f1_reconstructed.uid == f1.uid + + assert f2.uid in [flt.uid for flt in prj_deserialized.flights] + + assert line1.uid in [line.uid for line in f1_reconstructed.flight_lines] + assert line2.uid in [line.uid for line in f1_reconstructed.flight_lines] + From 666376087c994114bf16723d668281f7aadb2b0c Mon Sep 17 00:00:00 2001 From: Zachery Brady Date: Mon, 25 Jun 2018 18:21:54 -0600 Subject: [PATCH 115/236] Paritally Funtional Integration of new Project Models Integration and testing of functionality. Still Todo: Re-implement data demux for plotting. Improve data handling for mutliple files, transformations. --- dgp/gui/dialogs.py | 128 +++++------ dgp/gui/main.py | 330 ++++++++++++----------------- dgp/gui/splash.py | 31 +-- dgp/gui/ui/main_window.py | 3 +- dgp/gui/ui/main_window.ui | 16 +- dgp/gui/utils.py | 2 +- dgp/gui/workspace.py | 11 +- dgp/gui/workspaces/BaseTab.py | 8 +- dgp/gui/workspaces/PlotTab.py | 15 +- dgp/gui/workspaces/TransformTab.py | 27 ++- dgp/gui/workspaces/__init__.py | 3 - 11 files changed, 265 insertions(+), 309 deletions(-) diff --git a/dgp/gui/dialogs.py b/dgp/gui/dialogs.py index 0d6510b..3f9610a 100644 --- a/dgp/gui/dialogs.py +++ b/dgp/gui/dialogs.py @@ -8,16 +8,19 @@ import pathlib from typing import Union -import PyQt5.Qt as Qt import PyQt5.QtWidgets as QtWidgets -import PyQt5.QtCore as QtCore - -import dgp.lib.project as prj -import dgp.lib.enums as enums +from PyQt5.QtCore import Qt, QPoint, QModelIndex, QDate +from PyQt5.QtGui import QIcon +from PyQt5.QtWidgets import QListWidgetItem + +from core.controllers.BaseProjectController import BaseProjectController +from core.controllers.FlightController import FlightController +from core.models.flight import Flight +from core.models.project import AirborneProject +from core.types import enumerations from dgp.gui.models import TableModel, ComboEditDelegate from dgp.lib.etc import gen_uuid - from dgp.gui.ui import (add_flight_dialog, advanced_data_import, edit_import_view, project_dialog, channel_select_dialog) @@ -33,8 +36,8 @@ class BaseDialog(QtWidgets.QDialog): setText method) via the self.log attribute """ - def __init__(self, msg_recvr: str=None, parent=None, flags=0): - super().__init__(parent=parent, flags=flags | Qt.Qt.Dialog) + def __init__(self, msg_recvr: str = None, parent=None, flags=0): + super().__init__(parent=parent, flags=flags | Qt.Dialog) self._log = logging.getLogger(self.__class__.__name__) self._target = msg_recvr @@ -172,8 +175,10 @@ class EditImportDialog(BaseDialog, edit_import_view.Ui_Dialog): Parent Widget to this Dialog """ + def __init__(self, formats, edit_header=False, parent=None): - flags = Qt.Qt.Dialog + flags = Qt.Dialog + super().__init__('label_msg', parent=parent, flags=flags) self.setupUi(self) self._base_h = self.height() @@ -181,7 +186,7 @@ def __init__(self, formats, edit_header=False, parent=None): # Configure the QTableView self._view = self.table_col_edit # type: QtWidgets.QTableView - self._view.setContextMenuPolicy(Qt.Qt.CustomContextMenu) + self._view.setContextMenuPolicy(Qt.CustomContextMenu) if edit_header: self._view.customContextMenuRequested.connect(self._context_menu) self._view.setItemDelegate(ComboEditDelegate()) @@ -257,7 +262,7 @@ def format(self, value): @property def model(self) -> TableModel: return self._view.model() - + @property def skiprow(self) -> Union[int, None]: """Returns value of UI's 'Has Header' CheckBox to determine if first @@ -271,7 +276,7 @@ def skiprow(self) -> Union[int, None]: def skiprow(self, value: bool): self.chb_has_header.setChecked(bool(value)) - def _context_menu(self, point: Qt.QPoint): + def _context_menu(self, point: QPoint): row = self._view.rowAt(point.y()) col = self._view.columnAt(point.x()) index = self.model.index(row, col) @@ -283,9 +288,9 @@ def _context_menu(self, point: Qt.QPoint): menu.addAction(action) menu.exec_(self._view.mapToGlobal(point)) - def _custom_label(self, index: QtCore.QModelIndex): + def _custom_label(self, index: QModelIndex): # For some reason QInputDialog.getText does not recognize some kwargs - cur_val = index.data(role=QtCore.Qt.DisplayRole) + cur_val = index.data(role=Qt.DisplayRole) text, ok = QtWidgets.QInputDialog.getText(self, "Input Value", "Input Custom Value", @@ -314,49 +319,47 @@ class AdvancedImportDialog(BaseDialog, advanced_data_import.Ui_AdvancedImportDat Parent Widget """ - def __init__(self, project, flight, dtype=enums.DataTypes.GRAVITY, + def __init__(self, project: BaseProjectController, controller: FlightController, data_type: str, parent=None): super().__init__(msg_recvr='label_msg', parent=parent) self.setupUi(self) self._preview_limit = 5 self._path = None - self._dtype = dtype + self._dtype = data_type self._file_filter = "(*.csv *.dat *.txt)" self._base_dir = '.' self._sample = None - icon = {enums.DataTypes.GRAVITY: ':icons/gravity', - enums.DataTypes.TRAJECTORY: ':icons/gps'}[dtype] - self.setWindowIcon(Qt.QIcon(icon)) - self.setWindowTitle("Import {}".format(dtype.name.capitalize())) + icon = {'gravity': ':icons/gravity', + 'trajectory': ':icons/gps'}.get(data_type.lower(), '') + self.setWindowIcon(QIcon(icon)) + self.setWindowTitle("Import {}".format(data_type.capitalize())) - # Establish field enum based on dtype - self._fields = {enums.DataTypes.GRAVITY: enums.GravityTypes, - enums.DataTypes.TRAJECTORY: enums.GPSFields}[dtype] + # Establish field enum based on data_type + self._fields = {'gravity': enumerations.GravityTypes, + 'trajectory': enumerations.GPSFields}[data_type.lower()] formats = sorted(self._fields, key=lambda x: x.name) for item in formats: name = str(item.name).upper() self.cb_format.addItem(name, item) - editable = self._dtype == enums.DataTypes.TRAJECTORY + editable = self._dtype == enumerations.DataTypes.TRAJECTORY self._editor = EditImportDialog(formats=formats, edit_header=editable, parent=self) - for flt in project.flights: - self.combo_flights.addItem(flt.name, flt) + self.combo_flights.setModel(project.flight_model) if not self.combo_flights.count(): self.combo_flights.addItem("No Flights Available", None) - for mtr in project.meters: - self.combo_meters.addItem(mtr.name, mtr) + self.combo_meters.setModel(project.meter_model) if not self.combo_meters.count(): self.combo_meters.addItem("No Meters Available", None) - if flight is not None: - flt_idx = self.combo_flights.findData(flight) + if controller is not None: + flt_idx = self.combo_flights.findText(controller.entity.name) self.combo_flights.setCurrentIndex(flt_idx) # Signals/Slots @@ -367,8 +370,7 @@ def __init__(self, project, flight, dtype=enums.DataTypes.GRAVITY, @property def params(self): - return dict(path=self.path, - subtype=self.format, + return dict(subtype=self.format, skiprows=self.editor.skiprow, columns=self.editor.columns) @@ -398,7 +400,7 @@ def format(self, value): @property def flight(self): - return self.combo_flights.currentData() + return self.combo_flights.currentData(Qt.UserRole) @property def path(self) -> pathlib.Path: @@ -532,8 +534,8 @@ def _update(self): # # df = ti.import_trajectory(sbuf, ) def browse(self): - title = "Select {} Data File".format(self._dtype.name.capitalize()) - filt = "{typ} Data {ffilt}".format(typ=self._dtype.name.capitalize(), + title = "Select {} Data File".format(self._dtype.capitalize()) + filt = "{typ} Data {ffilt}".format(typ=self._dtype.capitalize(), ffilt=self._file_filter) raw_path, _ = QtWidgets.QFileDialog.getOpenFileName( parent=self, caption=title, directory=str(self._base_dir), @@ -553,24 +555,23 @@ def __init__(self, project, *args): self._flight = None self._grav_path = None self._gps_path = None - self.combo_meter.addItems(project.meters) - self.browse_gravity.clicked.connect(lambda: self.browse( - field=self.path_gravity)) - self.browse_gps.clicked.connect(lambda: self.browse( - field=self.path_gps)) + # self.combo_meter.addItems(project.meters) + # self.browse_gravity.clicked.connect(lambda: self.browse( + # field=self.path_gravity)) + # self.browse_gps.clicked.connect(lambda: self.browse( + # field=self.path_gps)) self.date_flight.setDate(datetime.datetime.today()) self._uid = gen_uuid('f') self.text_uuid.setText(self._uid) def accept(self): - qdate = self.date_flight.date() # type: QtCore.QDate - date = datetime.date(qdate.year(), qdate.month(), qdate.day()) - self._grav_path = self.path_gravity.text() - self._gps_path = self.path_gps.text() - self._flight = prj.Flight(self._project, self.text_name.text(), - self._project.get_meter( - self.combo_meter.currentText()), uuid=self._uid, date=date) - # print(self.params_model.updates) + qdate = self.date_flight.date() # type: QDate + date = datetime.datetime(qdate.year(), qdate.month(), qdate.day()) + + # self._grav_path = self.path_gravity.text() + # self._gps_path = self.path_gps.text() + + self._flight = Flight(self.text_name.text(), date=date) super().accept() def browse(self, field): @@ -580,7 +581,7 @@ def browse(self, field): field.setText(path) @property - def flight(self): + def flight(self) -> Flight: return self._flight @property @@ -619,15 +620,15 @@ def __init__(self, *args): self.prj_dir.setText(str(desktop)) # Populate the type selection list - flt_icon = Qt.QIcon(':icons/airborne') - boat_icon = Qt.QIcon(':icons/marine') - dgs_airborne = Qt.QListWidgetItem(flt_icon, 'DGS Airborne', - self.prj_type_list) - dgs_airborne.setData(QtCore.Qt.UserRole, enums.ProjectTypes.AIRBORNE) + flt_icon = QIcon(':icons/airborne') + boat_icon = QIcon(':icons/marine') + dgs_airborne = QListWidgetItem(flt_icon, 'DGS Airborne', + self.prj_type_list) + dgs_airborne.setData(Qt.UserRole, enumerations.ProjectTypes.AIRBORNE) self.prj_type_list.setCurrentItem(dgs_airborne) - dgs_marine = Qt.QListWidgetItem(boat_icon, 'DGS Marine', - self.prj_type_list) - dgs_marine.setData(QtCore.Qt.UserRole, enums.ProjectTypes.MARINE) + dgs_marine = QListWidgetItem(boat_icon, 'DGS Marine', + self.prj_type_list) + dgs_marine.setData(Qt.UserRole, enumerations.ProjectTypes.MARINE) def accept(self): """ @@ -660,13 +661,14 @@ def accept(self): return # TODO: Future implementation for Project types other than DGS AT1A - cdata = self.prj_type_list.currentItem().data(QtCore.Qt.UserRole) - if cdata == enums.ProjectTypes.AIRBORNE: + cdata = self.prj_type_list.currentItem().data(Qt.UserRole) + if cdata == enumerations.ProjectTypes.AIRBORNE: name = str(self.prj_name.text()).rstrip() path = pathlib.Path(self.prj_dir.text()).joinpath(name) if not path.exists(): path.mkdir(parents=True) - self._project = prj.AirborneProject(path, name) + + self._project = AirborneProject(name=name, path=path, description="Not implemented yet in Create Dialog") else: self.show_message("Invalid Project Type (Not yet implemented)", log=logging.WARNING, color='red') @@ -700,15 +702,15 @@ def __init__(self, cls, parent=None): self._title = QtWidgets.QLabel('

{cls}: {name}

'.format( cls=cls.__class__.__name__, name=name)) - self._title.setAlignment(Qt.Qt.AlignHCenter) + self._title.setAlignment(Qt.AlignHCenter) self._form = QtWidgets.QFormLayout() self._btns = QtWidgets.QDialogButtonBox(QtWidgets.QDialogButtonBox.Ok) self._btns.accepted.connect(self.accept) - vlayout.addWidget(self._title, alignment=Qt.Qt.AlignTop) + vlayout.addWidget(self._title, alignment=Qt.AlignTop) vlayout.addLayout(self._form) - vlayout.addWidget(self._btns, alignment=Qt.Qt.AlignBottom) + vlayout.addWidget(self._btns, alignment=Qt.AlignBottom) self.setLayout(vlayout) diff --git a/dgp/gui/main.py b/dgp/gui/main.py index a92e917..cbf3ee3 100644 --- a/dgp/gui/main.py +++ b/dgp/gui/main.py @@ -5,26 +5,23 @@ import logging from typing import Union -import PyQt5.QtCore as QtCore import PyQt5.QtWidgets as QtWidgets +from PyQt5.QtCore import Qt, pyqtSlot from PyQt5.QtGui import QColor from PyQt5.QtCore import pyqtSignal, pyqtBoundSignal -from PyQt5.QtWidgets import QMainWindow, QProgressDialog, QFileDialog +from PyQt5.QtWidgets import QMainWindow, QProgressDialog, QFileDialog, QWidget -import dgp.lib.project as prj -import dgp.lib.types as types -import dgp.lib.enums as enums -import dgp.gui.loader as loader -import dgp.lib.datastore as dm +import core.types.enumerations as enums +from core.controllers.BaseProjectController import BaseProjectController +from core.controllers.FlightController import FlightController +from core.models.ProjectTreeModel import ProjectTreeModel +from core.models.project import AirborneProject from dgp.gui.utils import (ConsoleHandler, LOG_FORMAT, LOG_LEVEL_MAP, LOG_COLOR_MAP, get_project_file) -from dgp.gui.dialogs import (AddFlightDialog, CreateProjectDialog, - AdvancedImportDialog) +from dgp.gui.dialogs import AddFlightDialog, CreateProjectDialog + from dgp.gui.workspace import FlightTab from dgp.gui.ui.main_window import Ui_MainWindow -from dgp.lib.etc import align_frames -from dgp.lib.trajectory_ingestor import TRAJECTORY_INTERP_FIELDS -from dgp.lib.gravity_ingestor import DGS_AT1A_INTERP_FIELDS def autosave(method): @@ -48,12 +45,12 @@ class MainWindow(QMainWindow, Ui_MainWindow): status = pyqtSignal(str) # type: pyqtBoundSignal progress = pyqtSignal(int) # type: pyqtBoundSignal - def __init__(self, project: Union[prj.GravityProject, - prj.AirborneProject]=None, *args): + def __init__(self, project: BaseProjectController, *args): super().__init__(*args) self.setupUi(self) - self.title = 'Dynamic Gravity Processor' + self.title = 'Dynamic Gravity Processor [*]' + self.setWindowTitle(self.title) # Attach to the root logger to capture all child events self.log = logging.getLogger() @@ -68,6 +65,10 @@ def __init__(self, project: Union[prj.GravityProject, # Setup Project self.project = project + self.project.set_parent(self) + self.project_model = ProjectTreeModel(self.project) + self.project_tree.setModel(self.project_model) + self.project_tree.expandAll() # Set Stylesheet customizations for GUI Window, see: # http://doc.qt.io/qt-5/stylesheet-examples.html#customizing-qtreeview @@ -97,11 +98,10 @@ def __init__(self, project: Union[prj.GravityProject, self._flight_tabs = self.flight_tabs # type: QtWidgets.QTabWidget self._open_tabs = {} # Track opened tabs by {uid: tab_widget, ...} - # Initialize Project Tree Display - self.project_tree.set_project(self.project) + self._mutated = False @property - def current_flight(self) -> Union[prj.Flight, None]: + def current_flight(self): """Returns the active flight based on which Flight Tab is in focus.""" if self._flight_tabs.count() > 0: return self._flight_tabs.currentWidget().flight @@ -119,7 +119,7 @@ def load(self): This may be safely deprecated as we currently do not perform any long running operations on initial load as we once did.""" self._init_slots() - self.setWindowState(QtCore.Qt.WindowMaximized) + self.setWindowState(Qt.WindowMaximized) self.save_project() self.show() try: @@ -140,24 +140,24 @@ def _init_slots(self): # Project Menu Actions # self.action_import_gps.triggered.connect( - lambda: self.import_data_dialog(enums.DataTypes.TRAJECTORY)) + lambda: self.project.load_file(enums.DataTypes.TRAJECTORY, )) self.action_import_grav.triggered.connect( - lambda: self.import_data_dialog(enums.DataTypes.GRAVITY)) + lambda: self.project.load_file(enums.DataTypes.GRAVITY, )) self.action_add_flight.triggered.connect(self.add_flight_dialog) - # Project Tree View Actions # - self.project_tree.doubleClicked.connect(self._launch_tab) - self.project_tree.item_removed.connect(self._project_item_removed) + self.project_model.flight_changed.connect(self._flight_changed) + self.project_model.project_changed.connect(self._project_mutated) # Project Control Buttons # self.prj_add_flight.clicked.connect(self.add_flight_dialog) self.prj_import_gps.clicked.connect( - lambda: self.import_data_dialog(enums.DataTypes.TRAJECTORY)) + lambda: self.project.load_file(enums.DataTypes.TRAJECTORY, )) self.prj_import_grav.clicked.connect( - lambda: self.import_data_dialog(enums.DataTypes.GRAVITY)) + lambda: self.project.load_file(enums.DataTypes.GRAVITY, )) # Tab Browser Actions # self._flight_tabs.tabCloseRequested.connect(self._tab_closed) + self._flight_tabs.currentChanged.connect(self._tab_changed) # Console Window Actions # self.combo_console_verbosity.currentIndexChanged[str].connect( @@ -188,70 +188,49 @@ def show_status(self, text, level): if level.lower() == 'error' or level.lower() == 'info': self.statusBar().showMessage(text, self._default_status_timeout) - def _launch_tab(self, index: QtCore.QModelIndex=None, flight=None) -> None: - """ - PyQtSlot: Called to launch a flight from the Project Tree View. - This function can also be called independent of the Model if a flight is - specified, for e.g. when creating a new Flight object. - Parameters - ---------- - index : QModelIndex - Model index pointing to a prj.Flight object to launch the tab for - flight : prj.Flight - Optional - required if this function is called without an index - - Returns - ------- - None - """ - if flight is None: - item = index.internalPointer() - if not isinstance(item, prj.Flight): - self.project_tree.toggle_expand(index) - return - flight = item # type: prj.Flight - if flight.uid in self._open_tabs: - self._flight_tabs.setCurrentWidget(self._open_tabs[flight.uid]) - self.project_tree.toggle_expand(index) - return - - self.log.info("Launching tab for flight: UID<{}>".format(flight.uid)) - new_tab = FlightTab(flight) - self._open_tabs[flight.uid] = new_tab - t_idx = self._flight_tabs.addTab(new_tab, flight.name) - self._flight_tabs.setCurrentIndex(t_idx) + def add_tab(self, tab: QWidget): + pass + @pyqtSlot(FlightController, name='_flight_changed') + def _flight_changed(self, flight: FlightController): + if flight.uid in self._open_tabs: + self._flight_tabs.setCurrentWidget(self._open_tabs[flight.uid]) + else: + flt_tab = FlightTab(flight) + self._open_tabs[flight.uid] = flt_tab + idx = self._flight_tabs.addTab(flt_tab, flight.name) + self._flight_tabs.setCurrentIndex(idx) + + @pyqtSlot(name='_project_mutated') + def _project_mutated(self): + print("Project mutated") + self._mutated = True + self.setWindowModified(True) + + @pyqtSlot(int, name='_tab_changed') + def _tab_changed(self, index: int): + self.log.debug("Tab index changed to %d", index) + current = self._flight_tabs.currentWidget() + if current is not None: + fc = current.flight # type: FlightController + self.project.set_active(fc, emit=False) + else: + self.log.debug("No flight tab open") + + @pyqtSlot(int, name='_tab_closed') def _tab_closed(self, index: int): # TODO: Should we delete the tab, or pop it off the stack to a cache? self.log.warning("Tab close requested for tab: {}".format(index)) self._flight_tabs.removeTab(index) - def _project_item_removed(self, item: types.BaseTreeItem): - if isinstance(item, types.DataSource): - flt = item.flight - # Error here, flt.uid is not in open_tabs when it should be. - if not flt.uid not in self._open_tabs: - return - tab = self._open_tabs.get(flt.uid, None) # type: FlightTab - if tab is None: - return - try: - tab.data_deleted(item) - except: - self.log.exception("Exception of some sort encountered deleting item") - else: - self.log.debug("Data deletion sucessful?") - else: - return - def show_progress_dialog(self, title, start=0, stop=1, label=None, cancel="Cancel", modal=False, flags=None) -> QProgressDialog: """Generate a progress bar to show progress on long running event.""" if flags is None: - flags = (QtCore.Qt.WindowSystemMenuHint | - QtCore.Qt.WindowTitleHint | - QtCore.Qt.WindowMinimizeButtonHint) + flags = (Qt.WindowSystemMenuHint | + Qt.WindowTitleHint | + Qt.WindowMinimizeButtonHint) dialog = QProgressDialog(label, cancel, start, stop, self, flags) dialog.setWindowTitle(title) @@ -268,103 +247,72 @@ def show_progress_status(self, start, stop, label=None) -> QtWidgets.QProgressBa sb = self.statusBar() # type: QtWidgets.QStatusBar progress = QtWidgets.QProgressBar(self) progress.setRange(start, stop) - progress.setAttribute(QtCore.Qt.WA_DeleteOnClose) + progress.setAttribute(Qt.WA_DeleteOnClose) progress.setToolTip(label) sb.addWidget(progress) return progress - def _add_data(self, data, dtype: enums.DataTypes, flight: prj.Flight, path): - uid = dm.get_datastore().save_data(data, flight.uid, dtype.value) - if uid is None: - self.log.error("Error occured writing DataFrame to HDF5 store.") - return - - cols = list(data.keys()) - ds = types.DataSource(uid, path, cols, dtype, x0=data.index.min(), - x1=data.index.max()) - flight.register_data(ds) - return ds - - @autosave - def add_data(self, data, dtype, flight, path): - ds = self._add_data(data, dtype, flight, path) - if flight.uid not in self._open_tabs: - # If flight is not opened we don't need to update the plot - return - else: - tab = self._open_tabs[flight.uid] # type: FlightTab - tab.new_data(ds) # tell the tab that new data is available - return - - def load_file(self, dtype, flight, **params): - """Loads a file in the background by using a QThread - Calls :py:class: dgp.ui.loader.LoaderThread to create threaded file - loader. - - Parameters - ---------- - dtype : enums.DataTypes - - flight : prj.Flight - - params : dict - - - """ - self.log.debug("Loading {dtype} into {flt}, with params: {param}" - .format(dtype=dtype.name, flt=flight, param=params)) - - prog = self.show_progress_status(0, 0) - prog.setValue(1) - - def _on_complete(data): - self.add_data(data, dtype, flight, params.get('path', None)) - - # align and crop gravity and trajectory frames if both are present - gravity = flight.get_source(enums.DataTypes.GRAVITY) - trajectory = flight.get_source(enums.DataTypes.TRAJECTORY) - if gravity is not None and trajectory is not None: - # align and crop the gravity and trajectory frames - fields = DGS_AT1A_INTERP_FIELDS | TRAJECTORY_INTERP_FIELDS - new_gravity, new_trajectory = align_frames(gravity.load(), - trajectory.load(), - interp_only=fields) - - # TODO: Fix this mess - # replace datasource objects - ds_attr = {'path': gravity.filename, 'dtype': gravity.dtype} - flight.remove_data(gravity) - self._add_data(new_gravity, ds_attr['dtype'], flight, - ds_attr['path']) - - ds_attr = {'path': trajectory.filename, - 'dtype': trajectory.dtype} - flight.remove_data(trajectory) - self._add_data(new_trajectory, ds_attr['dtype'], flight, - ds_attr['path']) - - def _result(result): - err, exc = result - prog.close() - if err: - msg = "Error loading {typ}::{fname}".format( - typ=dtype.name.capitalize(), fname=params.get('path', '')) - self.log.error(msg) - else: - msg = "Loaded {typ}::{fname}".format( - typ=dtype.name.capitalize(), fname=params.get('path', '')) - self.log.info(msg) - - ld = loader.get_loader(parent=self, dtype=dtype, on_complete=_on_complete, - on_error=_result, **params) - ld.start() + # def _add_data(self, data, dtype: enums.DataTypes, flight: prj.Flight, path): + # uid = dm.get_datastore().save_data(data, flight.uid, dtype.value) + # if uid is None: + # self.log.error("Error occured writing DataFrame to HDF5 _store.") + # return + # + # cols = list(data.keys()) + # ds = types.DataSource(uid, path, cols, dtype, x0=data.index.min(), + # x1=data.index.max()) + # flight.register_data(ds) + # return ds + + # def load_file(self, dtype, flight, **params): + # def _on_complete(data): + # self.add_data(data, dtype, flight, params.get('path', None)) + # + # # align and crop gravity and trajectory frames if both are present + # gravity = flight.get_source(enums.DataTypes.GRAVITY) + # trajectory = flight.get_source(enums.DataTypes.TRAJECTORY) + # if gravity is not None and trajectory is not None: + # # align and crop the gravity and trajectory frames + # fields = DGS_AT1A_INTERP_FIELDS | TRAJECTORY_INTERP_FIELDS + # new_gravity, new_trajectory = align_frames(gravity.load(), + # trajectory.load(), + # interp_only=fields) + # + # # TODO: Fix this mess + # # replace datasource objects + # ds_attr = {'path': gravity.filename, 'dtype': gravity.dtype} + # flight.remove_data(gravity) + # self._add_data(new_gravity, ds_attr['dtype'], flight, + # ds_attr['path']) + # + # ds_attr = {'path': trajectory.filename, + # 'dtype': trajectory.dtype} + # flight.remove_data(trajectory) + # self._add_data(new_trajectory, ds_attr['dtype'], flight, + # ds_attr['path']) + # + # def _result(result): + # err, exc = result + # prog.close() + # if err: + # msg = "Error loading {typ}::{fname}".format( + # typ=dtype.name.capitalize(), fname=params.get('path', '')) + # self.log.error(msg) + # else: + # msg = "Loaded {typ}::{fname}".format( + # typ=dtype.name.capitalize(), fname=params.get('path', '')) + # self.log.info(msg) + # + # ld = loader.get_loader(parent=self, dtype=dtype, on_complete=_on_complete, + # on_error=_result, **params) + # ld.start() def save_project(self) -> None: if self.project is None: return if self.project.save(): - self.setWindowTitle(self.title + ' - {} [*]' - .format(self.project.name)) + # self.setWindowTitle(self.title + ' - {} [*]' + # .format(self.project.name)) self.setWindowModified(False) self.log.info("Project saved.") else: @@ -372,26 +320,26 @@ def save_project(self) -> None: # Project dialog functions ################################################ - def import_data_dialog(self, dtype=None) -> None: - """ - Launch a dialog window for user to specify path and parameters to - load a file of dtype. - Params gathered by dialog will be passed to :py:meth: self.load_file - which constructs the loading thread and performs the import. - - Parameters - ---------- - dtype : enums.DataTypes - Data type for which to launch dialog: GRAVITY or TRAJECTORY - - """ - dialog = AdvancedImportDialog(self.project, self.current_flight, - dtype=dtype, parent=self) - dialog.browse() - if dialog.exec_(): - # TODO: Should path be contained within params or should we take - # it as its own parameter - self.load_file(dtype, dialog.flight, **dialog.params) + # def import_data_dialog(self, dtype=None) -> None: + # """ + # Launch a dialog window for user to specify path and parameters to + # load a file of dtype. + # Params gathered by dialog will be passed to :py:meth: self.load_file + # which constructs the loading thread and performs the import. + # + # Parameters + # ---------- + # dtype : enumerations.DataTypes + # Data type for which to launch dialog: GRAVITY or TRAJECTORY + # + # """ + # dialog = AdvancedImportDialog(self.project, self.current_flight, + # data_type=dtype, parent=self) + # dialog.browse() + # if dialog.exec_(): + # # TODO: Should path be contained within params or should we take + # # it as its own parameter + # self.load_file(dtype, dialog.flight, **dialog.params) def new_project_dialog(self) -> QMainWindow: new_window = True @@ -421,17 +369,20 @@ def open_project_dialog(self) -> None: .format(path)) return self.save_project() - self.project = prj.AirborneProject.load(prj_file) + with open(prj_file, 'r') as fd: + self.project = AirborneProject.from_json(fd.read()) self.update_project() return @autosave def add_flight_dialog(self) -> None: + # TODO: Move this into ProjectController as flights are the purview of the project dialog = AddFlightDialog(self.project) if dialog.exec_(): flight = dialog.flight self.log.info("Adding flight {}".format(flight.name)) - self.project.add_flight(flight) + fc = self.project.add_child(flight) # type: FlightController + self.project.set_active(fc) # TODO: Need to re-implement this for new data import method # OR - remove the option to add data during flight creation @@ -439,7 +390,6 @@ def add_flight_dialog(self) -> None: # self.import_data(dialog.gravity, 'gravity', flight) # if dialog.gps: # self.import_data(dialog.gps, 'gps', flight) - self._launch_tab(flight=flight) return self.log.info("New flight creation aborted.") return diff --git a/dgp/gui/splash.py b/dgp/gui/splash.py index 23fa947..53d86df 100644 --- a/dgp/gui/splash.py +++ b/dgp/gui/splash.py @@ -1,4 +1,4 @@ -# coding: utf-8 +# -*- coding: utf-8 -*- import sys @@ -11,10 +11,11 @@ import PyQt5.QtCore as QtCore from PyQt5.uic import loadUiType +from core.controllers.ProjectController import AirborneProjectController +from core.models.project import AirborneProject, GravityProject from dgp.gui.main import MainWindow from dgp.gui.utils import ConsoleHandler, LOG_FORMAT, LOG_COLOR_MAP, get_project_file from dgp.gui.dialogs import CreateProjectDialog -import dgp.lib.project as prj splash_screen, _ = loadUiType('dgp/gui/ui/splash_screen.ui') @@ -31,6 +32,7 @@ def __init__(self, *args): self.setupUi(self) + # TODO: Change this to support other OS's self.settings_dir = Path.home().joinpath( 'AppData\Local\DynamicGravitySystems\DGP') self.recent_file = self.settings_dir.joinpath('recent.json') @@ -38,7 +40,6 @@ def __init__(self, *args): self.log.info("Settings Directory doesn't exist, creating.") self.settings_dir.mkdir(parents=True) - # self.dialog_buttons.accepted.connect(self.accept) self.btn_newproject.clicked.connect(self.new_project) self.btn_browse.clicked.connect(self.browse_project) self.list_projects.currentItemChanged.connect( @@ -60,28 +61,31 @@ def setup_logging(level=logging.DEBUG): root_log.addHandler(std_err_handler) return logging.getLogger(__name__) - def accept(self, project=None): + def accept(self, project: Union[GravityProject, None] = None): """ Runs some basic verification before calling super(QDialog).accept(). """ # Case where project object is passed to accept() - if isinstance(project, prj.GravityProject): + if isinstance(project, GravityProject): self.log.debug("Opening new project: {}".format(project.name)) elif not self.project_path: self.log.error("No valid project selected.") else: try: - project = prj.AirborneProject.load(self.project_path) + # project = prj.AirborneProject.load(self.project_path) + with open(self.project_path, 'r') as fd: + project = AirborneProject.from_json(fd.read()) except FileNotFoundError: self.log.error("Project could not be loaded from path: {}" .format(self.project_path)) return self.update_recent_files(self.recent_file, - {project.name: project.projectdir}) + {project.name: project.path}) - main_window = MainWindow(project) + controller = AirborneProjectController(project) + main_window = MainWindow(controller) main_window.load() super().accept() return main_window @@ -118,14 +122,17 @@ def new_project(self): """Allow the user to create a new project""" dialog = CreateProjectDialog() if dialog.exec_(): - project = dialog.project # type: prj.AirborneProject - project.save() + project = dialog.project # type: AirborneProject + if not project.path.exists(): + print("Making directory") + project.path.mkdir(parents=True) + project.to_json(to_file=True) + self.accept(project) def browse_project(self): """Allow the user to browse for a project directory and load.""" - path = QtWidgets.QFileDialog.getExistingDirectory(self, - "Select Project Dir") + path = QtWidgets.QFileDialog.getExistingDirectory(self, "Select Project Dir") if not path: return diff --git a/dgp/gui/ui/main_window.py b/dgp/gui/ui/main_window.py index a87d084..4b6966c 100644 --- a/dgp/gui/ui/main_window.py +++ b/dgp/gui/ui/main_window.py @@ -98,6 +98,7 @@ def setupUi(self, MainWindow): self.prj_add_meter.setObjectName("prj_add_meter") self.project_dock_grid.addWidget(self.prj_add_meter, 2, 1, 1, 1) self.project_tree = ProjectTreeView(self.project_dock_contents) + self.project_tree.setEditTriggers(QtWidgets.QAbstractItemView.NoEditTriggers) self.project_tree.setObjectName("project_tree") self.project_dock_grid.addWidget(self.project_tree, 1, 0, 1, 2) self.verticalLayout_4.addLayout(self.project_dock_grid) @@ -321,6 +322,6 @@ def retranslateUi(self, MainWindow): self.action_import_gps.setText(_translate("MainWindow", "Import GPS")) self.action_import_grav.setText(_translate("MainWindow", "Import Gravity")) -from dgp.gui.views import ProjectTreeView +from dgp.core.views.ProjectTreeView import ProjectTreeView from dgp.gui.workspace import MainWorkspace from dgp import resources_rc diff --git a/dgp/gui/ui/main_window.ui b/dgp/gui/ui/main_window.ui index a0b6918..f99ed2c 100644 --- a/dgp/gui/ui/main_window.ui +++ b/dgp/gui/ui/main_window.ui @@ -218,7 +218,11 @@ - + + + QAbstractItemView::NoEditTriggers + + @@ -624,17 +628,17 @@ + + ProjectTreeView + QTreeView +
dgp.core.views.ProjectTreeView
+ MainWorkspace QTabWidget
dgp.gui.workspace
1 - - ProjectTreeView - QTreeView -
dgp.gui.views
- prj_add_flight diff --git a/dgp/gui/utils.py b/dgp/gui/utils.py index ae659b4..8636ab3 100644 --- a/dgp/gui/utils.py +++ b/dgp/gui/utils.py @@ -47,6 +47,6 @@ def get_project_file(path: Path) -> Union[Path, None]: :param path: str or pathlib.Path : Directory path to project :return: pathlib.Path : absolute path to *.d2p file if found, else False """ - for child in sorted(path.glob('*.d2p')): + for child in sorted(path.glob('*.json')): return child.resolve() return None diff --git a/dgp/gui/workspace.py b/dgp/gui/workspace.py index eb8e269..20a0b00 100644 --- a/dgp/gui/workspace.py +++ b/dgp/gui/workspace.py @@ -8,17 +8,14 @@ import PyQt5.QtWidgets as QtWidgets import PyQt5.QtGui as QtGui - +from core.controllers.FlightController import FlightController from .workspaces import * -import dgp.gui.models as models -import dgp.lib.types as types -from dgp.lib.project import Flight class FlightTab(QWidget): """Top Level Tab created for each Flight object open in the workspace""" - def __init__(self, flight: Flight, parent=None, flags=0, **kwargs): + def __init__(self, flight, parent=None, flags=0, **kwargs): super().__init__(parent=parent, flags=Qt.Widget) self.log = logging.getLogger(__name__) self._flight = flight @@ -45,7 +42,7 @@ def __init__(self, flight: Flight, parent=None, flags=0, **kwargs): def subtab_widget(self): return self._workspace.currentWidget().widget() - def new_data(self, dsrc: types.DataSource): + def new_data(self, dsrc): for tab in [self._plot_tab, self._transform_tab]: tab.data_modified('add', dsrc) @@ -55,7 +52,7 @@ def data_deleted(self, dsrc): tab.data_modified('remove', dsrc) @property - def flight(self): + def flight(self) -> FlightController: return self._flight @property diff --git a/dgp/gui/workspaces/BaseTab.py b/dgp/gui/workspaces/BaseTab.py index 766dfab..b95f3a4 100644 --- a/dgp/gui/workspaces/BaseTab.py +++ b/dgp/gui/workspaces/BaseTab.py @@ -2,14 +2,12 @@ from PyQt5.QtWidgets import QWidget -import dgp.lib.types as types -from dgp.lib.project import Flight from dgp.lib.etc import gen_uuid class BaseTab(QWidget): """Base Workspace Tab Widget - Subclass to specialize function""" - def __init__(self, label: str, flight: Flight, parent=None, **kwargs): + def __init__(self, label: str, flight, parent=None, **kwargs): super().__init__(parent, **kwargs) self.label = label self._flight = flight @@ -29,7 +27,7 @@ def model(self, value): self._model = value @property - def flight(self) -> Flight: + def flight(self): return self._flight @property @@ -40,7 +38,7 @@ def plot(self): def plot(self, value): self._plot = value - def data_modified(self, action: str, dsrc: types.DataSource): + def data_modified(self, action: str, dsrc): pass @property diff --git a/dgp/gui/workspaces/PlotTab.py b/dgp/gui/workspaces/PlotTab.py index ab62c3c..b8f592c 100644 --- a/dgp/gui/workspaces/PlotTab.py +++ b/dgp/gui/workspaces/PlotTab.py @@ -6,9 +6,10 @@ from PyQt5.QtWidgets import QVBoxLayout, QHBoxLayout import PyQt5.QtWidgets as QtWidgets -from . import BaseTab, Flight import dgp.gui.models as models import dgp.lib.types as types +from . import BaseTab +from core.controllers.FlightController import FlightController from dgp.gui.dialogs import ChannelSelectionDialog from dgp.gui.plotting.plotters import LineUpdate, PqtLineSelectPlot @@ -19,7 +20,7 @@ class PlotTab(BaseTab): _name = "Line Selection" defaults = {'gravity': 0, 'long': 1, 'cross': 1} - def __init__(self, label: str, flight: Flight, axes: int, + def __init__(self, label: str, flight: FlightController, axes: int, plot_default=True, **kwargs): super().__init__(label, flight, **kwargs) self.log = logging.getLogger('PlotTab') @@ -49,10 +50,10 @@ def _setup_ui(self): alignment=Qt.AlignRight) vlayout.addLayout(top_button_hlayout) - # self.plot = LineGrabPlot(self.flight, self._axes_count) self.plot = PqtLineSelectPlot(flight=self.flight, rows=3) - for line in self.flight.lines: - self.plot.add_patch(line.start, line.stop, line.uid, line.label) + # TODO Renable this + # for line in self.flight.lines: + # self.plot.add_patch(line.start, line.stop, line.uid, line.label) self.plot.line_changed.connect(self._on_modified_line) vlayout.addWidget(self.plot.widget) @@ -60,6 +61,8 @@ def _setup_ui(self): self.setLayout(vlayout) def _init_model(self, default_state=False): + # TODO: Reimplement this + return channels = self.flight.channels plot_model = models.ChannelListTreeModel(channels, len(self.plot)) plot_model.plotOverflow.connect(self._too_many_children) @@ -89,7 +92,7 @@ def _show_select_dialog(self): dlg.set_model(self.model) dlg.show() - def data_modified(self, action: str, dsrc: types.DataSource): + def data_modified(self, action: str, dsrc): if action.lower() == 'add': self.log.info("Adding channels to model.") n_channels = dsrc.get_channels() diff --git a/dgp/gui/workspaces/TransformTab.py b/dgp/gui/workspaces/TransformTab.py index 888a7d5..b27b45f 100644 --- a/dgp/gui/workspaces/TransformTab.py +++ b/dgp/gui/workspaces/TransformTab.py @@ -6,18 +6,15 @@ from PyQt5.QtGui import QStandardItemModel, QStandardItem from PyQt5.QtWidgets import QVBoxLayout, QWidget, QComboBox -import pandas as pd -import numpy as np - -from dgp.lib.types import DataSource, QtDataRoles +from core.controllers.FlightController import FlightController from dgp.lib.transform.transform_graphs import SyncGravity, AirbornePost, TransformGraph from dgp.gui.plotting.plotters import TransformPlot -from . import BaseTab, Flight +from . import BaseTab from ..ui.transform_tab_widget import Ui_TransformInterface class TransformWidget(QWidget, Ui_TransformInterface): - def __init__(self, flight: Flight): + def __init__(self, flight: FlightController): super().__init__() self.setupUi(self) self.log = logging.getLogger(__name__) @@ -48,14 +45,14 @@ def __init__(self, flight: Flight): for choice in ['Time', 'Latitude', 'Longitude']: item = QStandardItem(choice) - item.setData(0, QtDataRoles.UserRole) + item.setData(0, Qt.UserRole) self.plot_index.appendRow(item) self.cb_plot_index.setCurrentIndex(0) for choice, method in [('Airborne Post', AirbornePost)]: item = QStandardItem(choice) - item.setData(method, QtDataRoles.UserRole) + item.setData(method, Qt.UserRole) self.transform_graphs.appendRow(item) self.bt_execute_transform.clicked.connect(self.execute_transform) @@ -84,11 +81,11 @@ def plot(self) -> TransformPlot: def _set_flight_lines(self): self.flight_lines.clear() line_all = QStandardItem("All") - line_all.setData('all', role=QtDataRoles.UserRole) + line_all.setData('all', role=Qt.UserRole) self.flight_lines.appendRow(line_all) for line in self._flight.lines: item = QStandardItem(str(line)) - item.setData(line, QtDataRoles.UserRole) + item.setData(line, Qt.UserRole) self.flight_lines.appendRow(item) def _set_all_channels(self, state=Qt.Checked): @@ -96,7 +93,7 @@ def _set_all_channels(self, state=Qt.Checked): self.channels.item(i).setCheckState(state) def _update_channel_selection(self, item: QStandardItem): - data = item.data(QtDataRoles.UserRole) + data = item.data(Qt.UserRole) if item.checkState() == Qt.Checked: self.plot.add_series(data) else: @@ -112,7 +109,7 @@ def execute_transform(self): return self.log.info("Preparing Transformation Graph") - transform = self.cb_transform_graphs.currentData(QtDataRoles.UserRole) + transform = self.cb_transform_graphs.currentData(Qt.UserRole) graph = transform(self.raw_trajectory, self.raw_gravity, 0, 0) self.log.info("Executing graph") @@ -124,7 +121,7 @@ def execute_transform(self): for col in result_df.columns: item = QStandardItem(col) item.setCheckable(True) - item.setData(result_df[col], QtDataRoles.UserRole) + item.setData(result_df[col], Qt.UserRole) self.channels.appendRow(item) if col in default_channels: item.setCheckState(Qt.Checked) @@ -139,14 +136,14 @@ class TransformTab(BaseTab): """ _name = "Transform" - def __init__(self, label: str, flight: Flight): + def __init__(self, label: str, flight): super().__init__(label, flight) self._layout = QVBoxLayout() self._layout.addWidget(TransformWidget(flight)) self.setLayout(self._layout) - def data_modified(self, action: str, dsrc: DataSource): + def data_modified(self, action: str, dsrc): """Slot: Called when a DataSource has been added/removed from the Flight this tab/workspace is associated with.""" if action.lower() == 'add': diff --git a/dgp/gui/workspaces/__init__.py b/dgp/gui/workspaces/__init__.py index a6dcb9c..6bf03fe 100644 --- a/dgp/gui/workspaces/__init__.py +++ b/dgp/gui/workspaces/__init__.py @@ -2,9 +2,6 @@ from importlib import import_module -from dgp.lib.project import Flight -from dgp.lib.enums import DataTypes - from .BaseTab import BaseTab from .LineTab import LineProcessTab from .PlotTab import PlotTab From 3981bca22d44f8092ca45ed3947c1816d5194773 Mon Sep 17 00:00:00 2001 From: Zachery Brady Date: Mon, 25 Jun 2018 18:22:48 -0600 Subject: [PATCH 116/236] Refactor/Enhancements: Refactor naming and splitting of project controllers. Rename all controller modules to Python conventions. Split controllers into different modules, and added dedicated controllers for DataFile/FlightLines due to the need for specialized handling/methods for each. Added some more tests for controllers. Deleted precompiled Qt UI Files from git. Build script is already implemented to compile the UI files before tests. Having the compiled files tracked along with the .ui XML source is redundant. --- dgp/core/controllers/BaseProjectController.py | 63 ---- dgp/core/controllers/Containers.py | 97 ----- dgp/core/controllers/FlightController.py | 130 ------- dgp/core/controllers/ProjectController.py | 291 --------------- dgp/core/controllers/__init__.py | 1 + dgp/core/controllers/controller_helpers.py | 25 ++ dgp/core/controllers/controller_interfaces.py | 58 +++ dgp/core/controllers/controller_mixins.py | 19 + dgp/core/controllers/datafile_controller.py | 52 +++ dgp/core/controllers/flight_controller.py | 250 +++++++++++++ dgp/core/controllers/flightline_controller.py | 28 ++ ...Controller.py => gravimeter_controller.py} | 36 +- .../{HDFController.py => hdf5_controller.py} | 62 ++-- dgp/core/controllers/project_containers.py | 48 +++ dgp/core/controllers/project_controllers.py | 351 ++++++++++++++++++ dgp/gui/loader.py | 4 +- dgp/gui/models.py | 161 +++----- dgp/gui/ui/.gitignore | 1 + dgp/gui/ui/add_flight_dialog.py | 156 -------- dgp/gui/ui/advanced_data_import.py | 231 ------------ dgp/gui/ui/channel_select_dialog.py | 39 -- dgp/gui/ui/data_import_dialog.py | 85 ----- dgp/gui/ui/edit_import_view.py | 110 ------ dgp/gui/ui/info_dialog.py | 34 -- dgp/gui/ui/main_window.py | 327 ---------------- dgp/gui/ui/project_dialog.py | 194 ---------- dgp/gui/ui/splash_screen.py | 126 ------- dgp/lib/types.py | 171 ++------- examples/treemodel_integration_test.py | 4 +- tests/test_dialogs.py | 4 +- tests/test_loader.py | 6 +- tests/test_project_controllers.py | 82 ++++ tests/test_treemodel.py | 110 ------ 33 files changed, 1034 insertions(+), 2322 deletions(-) delete mode 100644 dgp/core/controllers/BaseProjectController.py delete mode 100644 dgp/core/controllers/Containers.py delete mode 100644 dgp/core/controllers/FlightController.py delete mode 100644 dgp/core/controllers/ProjectController.py create mode 100644 dgp/core/controllers/controller_helpers.py create mode 100644 dgp/core/controllers/controller_interfaces.py create mode 100644 dgp/core/controllers/controller_mixins.py create mode 100644 dgp/core/controllers/datafile_controller.py create mode 100644 dgp/core/controllers/flight_controller.py create mode 100644 dgp/core/controllers/flightline_controller.py rename dgp/core/controllers/{MeterController.py => gravimeter_controller.py} (57%) rename dgp/core/controllers/{HDFController.py => hdf5_controller.py} (79%) create mode 100644 dgp/core/controllers/project_containers.py create mode 100644 dgp/core/controllers/project_controllers.py create mode 100644 dgp/gui/ui/.gitignore delete mode 100644 dgp/gui/ui/add_flight_dialog.py delete mode 100644 dgp/gui/ui/advanced_data_import.py delete mode 100644 dgp/gui/ui/channel_select_dialog.py delete mode 100644 dgp/gui/ui/data_import_dialog.py delete mode 100644 dgp/gui/ui/edit_import_view.py delete mode 100644 dgp/gui/ui/info_dialog.py delete mode 100644 dgp/gui/ui/main_window.py delete mode 100644 dgp/gui/ui/project_dialog.py delete mode 100644 dgp/gui/ui/splash_screen.py delete mode 100644 tests/test_treemodel.py diff --git a/dgp/core/controllers/BaseProjectController.py b/dgp/core/controllers/BaseProjectController.py deleted file mode 100644 index 49d20eb..0000000 --- a/dgp/core/controllers/BaseProjectController.py +++ /dev/null @@ -1,63 +0,0 @@ -# -*- coding: utf-8 -*- -from pathlib import Path -from typing import Optional, Any - -from PyQt5.QtCore import QObject -from PyQt5.QtGui import QStandardItem - -from core.controllers.HDFController import HDFController -from core.models.project import GravityProject - - -class BaseProjectController(QStandardItem): - def __init__(self, project: GravityProject, parent=None): - super().__init__(project.name) - self._project = project - self._hdfc = HDFController(self._project.path) - self._active = None - self._parent = parent - - def get_parent(self) -> QObject: - return self._parent - - def set_parent(self, value: QObject): - self._parent = value - - @property - def name(self) -> str: - return self.project.name - - @property - def project(self) -> GravityProject: - return self._project - - @property - def path(self) -> Path: - return self._project.path - - @property - def active_entity(self): - return self._active - - @property - def hdf5store(self) -> HDFController: - return self._hdfc - - def set_active(self, entity, emit: bool = True): - raise NotImplementedError - - def properties(self): - print(self.__class__.__name__) - - def add_child(self, child): - raise NotImplementedError - - def remove_child(self, child, row: int, confirm: bool=True): - raise NotImplementedError - - def load_file(self, ftype, destination: Optional[Any]=None) -> None: - raise NotImplementedError - - def save(self): - return self.project.to_json(indent=2, to_file=True) - diff --git a/dgp/core/controllers/Containers.py b/dgp/core/controllers/Containers.py deleted file mode 100644 index 9f0da76..0000000 --- a/dgp/core/controllers/Containers.py +++ /dev/null @@ -1,97 +0,0 @@ -# -*- coding: utf-8 -*- -from typing import Optional, Any, Union - -from PyQt5.QtCore import QObject -from PyQt5.QtGui import QStandardItem, QStandardItemModel, QIcon -from PyQt5.QtWidgets import QMessageBox, QWidget, QInputDialog - - -class StandardProjectContainer(QStandardItem): - """Displayable StandardItem used for grouping sub-elements. - An internal QStandardItemModel representation is maintained for use in - other Qt elements e.g. a combo-box or list view. - """ - inherit_context = False - - def __init__(self, label: str, icon: str=None, inherit=False, **kwargs): - super().__init__(label) - if icon is not None: - self.setIcon(QIcon(icon)) - self._model = QStandardItemModel() - self.inherit_context = inherit - self.setEditable(False) - self._attributes = kwargs - - def properties(self): - print(self.__class__.__name__) - - @property - def internal_model(self) -> QStandardItemModel: - return self._model - - def appendRow(self, item: QStandardItem): - """ - Notes - ----- - The same item cannot be added to two parents as the parent attribute - is mutated when added. Use clone() or similar method to create two identical copies. - """ - super().appendRow(item) - self._model.appendRow(item.clone()) - - def removeRow(self, row: int): - super().removeRow(row) - self._model.removeRow(row) - - -class StandardFlightItem(QStandardItem): - def __init__(self, label: str, data: Optional[Any] = None, icon: Optional[str] = None, - controller: 'FlightController' = None): - super().__init__(label) - if icon is not None: - self.setIcon(QIcon(icon)) - - self.setText(label) - self._data = data - self._controller = controller # TODO: Is this used, or will it be? - # self.setData(data, QtDataRoles.UserRole + 1) - if data is not None: - self.setToolTip(str(data.uid)) - self.setEditable(False) - - @property - def menu_bindings(self): - return [ - ('addAction', ('Delete <%s>' % self.text(), - lambda: self.controller.remove_child(self._data, self.row(), True))) - ] - - @property - def uid(self): - return self._data.uid - - @property - def controller(self) -> 'FlightController': - return self._controller - - def properties(self): - print(self.__class__.__name__) - - -# TODO: Move these into dialog/helpers module -def confirm_action(title: str, message: str, - parent: Optional[Union[QWidget, QObject]]=None): - dlg = QMessageBox(QMessageBox.Question, title, message, - QMessageBox.Yes | QMessageBox.No, parent=parent) - dlg.setDefaultButton(QMessageBox.No) - dlg.exec_() - return dlg.result() == QMessageBox.Yes - - -def get_input(title: str, label: str, text: str, parent: QWidget=None): - new_text, result = QInputDialog.getText(parent, title, label, text=text) - if result: - return new_text - return False - - diff --git a/dgp/core/controllers/FlightController.py b/dgp/core/controllers/FlightController.py deleted file mode 100644 index 25b779a..0000000 --- a/dgp/core/controllers/FlightController.py +++ /dev/null @@ -1,130 +0,0 @@ -# -*- coding: utf-8 -*- -from typing import Optional, Union - -from PyQt5.QtCore import Qt -from PyQt5.QtGui import QStandardItem, QIcon, QStandardItemModel - -from core.controllers import Containers -from core.controllers.Containers import StandardProjectContainer, StandardFlightItem -from core.controllers.BaseProjectController import BaseProjectController -from core.models.flight import Flight, FlightLine -from core.models.data import DataFile - -from core.types.enumerations import DataTypes - -FOLDER_ICON = ":/icons/folder_open.png" - - -class FlightController(QStandardItem): - inherit_context = True - - def __init__(self, flight: Flight, icon: Optional[str]=None, - controller: Optional[BaseProjectController]=None): - """Assemble the view/controller repr from the base flight object.""" - super().__init__(flight.name) - if icon is not None: - self.setIcon(QIcon(icon)) - self.setEditable(False) - self.setData(flight.uid, Qt.UserRole) - - self._flight = flight - self._project_controller = controller - self._active = False - - self._flight_lines = StandardProjectContainer("Flight Lines", FOLDER_ICON) - self._data_files = StandardProjectContainer("Data Files", FOLDER_ICON) - self.appendRow(self._flight_lines) - self.appendRow(self._data_files) - - for item in self._flight.flight_lines: - self._flight_lines.appendRow(self._wrap_item(item)) - - for item in self._flight.data_files: - self._data_files.appendRow(self._wrap_item(item)) - - # Think about multiple files, what to do? - self._active_gravity = None - self._active_trajectory = None - - self._bindings = [ - ('addAction', ('Set Active', lambda: self.controller.set_active(self))), - ('addAction', ('Import Gravity', - lambda: self.controller.load_file(DataTypes.GRAVITY, self))), - ('addAction', ('Import Trajectory', - lambda: self.controller.load_file(DataTypes.TRAJECTORY, self))), - ('addSeparator', ()), - ('addAction', ('Delete <%s>' % self._flight.name, - lambda: self.controller.remove_child(self._flight, self.row(), True))), - ('addAction', ('Rename Flight', self.set_name)) - ] - - @property - def entity(self) -> Flight: - return self._flight - - @property - def controller(self) -> BaseProjectController: - return self._project_controller - - @property - def menu_bindings(self): - return self._bindings - - @property - def gravity(self): - return None - - @property - def trajectory(self): - return None - - @property - def lines_model(self) -> QStandardItemModel: - return self._flight_lines.internal_model - - def is_active(self): - return self.controller.active_entity == self - - def properties(self): - for i in range(self._data_files.rowCount()): - file = self._data_files.child(i) - if file._data.group == 'gravity': - print(file) - break - print(self.__class__.__name__) - - def _wrap_item(self, item: Union[FlightLine, DataFile]): - return StandardFlightItem(str(item), item, controller=self) - - def add_child(self, child: Union[FlightLine, DataFile]): - self._flight.add_child(child) - if isinstance(child, FlightLine): - self._flight_lines.appendRow(self._wrap_item(child)) - elif isinstance(child, DataFile): - self._data_files.appendRow(self._wrap_item(child)) - - def remove_child(self, child: Union[FlightLine, DataFile], row: int, confirm: bool=True) -> None: - if confirm: - if not Containers.confirm_action("Confirm Deletion", "Are you sure you want to delete %s" % str(child), - self.controller.get_parent()): - return - self._flight.remove_child(child) - if isinstance(child, FlightLine): - self._flight_lines.removeRow(row) - elif isinstance(child, DataFile): - self._data_files.removeRow(row) - - def set_name(self): - name = Containers.get_input("Set Name", "Enter a new name:", self._flight.name) - if name: - self._flight.name = name - self.setData(name, role=Qt.DisplayRole) - - def __hash__(self): - return hash(self._flight.uid) - - def __getattr__(self, key): - return getattr(self._flight, key) - - def __str__(self): - return "" % (self._flight.name, repr(self._flight.uid)) diff --git a/dgp/core/controllers/ProjectController.py b/dgp/core/controllers/ProjectController.py deleted file mode 100644 index 86a9dbb..0000000 --- a/dgp/core/controllers/ProjectController.py +++ /dev/null @@ -1,291 +0,0 @@ -# -*- coding: utf-8 -*- -import functools -import inspect -import logging -import shlex -import sys -from pathlib import Path -from weakref import WeakSet -from typing import Optional, Union, Generator, Callable, Any - -from PyQt5.QtCore import Qt, QProcess, QThread, pyqtSignal, QObject, pyqtSlot -from PyQt5.QtGui import QStandardItem, QBrush, QColor, QStandardItemModel, QIcon -from pandas import DataFrame - -from core.controllers import Containers -from core.controllers.FlightController import FlightController -from core.controllers.MeterController import GravimeterController -from core.controllers.Containers import StandardProjectContainer, confirm_action -from core.controllers.BaseProjectController import BaseProjectController -from core.models.data import DataFile -from core.models.flight import Flight -from core.models.meter import Gravimeter -from core.models.project import GravityProject, AirborneProject -from core.oid import OID -from core.types.enumerations import DataTypes -from gui.dialogs import AdvancedImportDialog -from lib.etc import align_frames -from lib.gravity_ingestor import read_at1a -from lib.trajectory_ingestor import import_trajectory - -BASE_COLOR = QBrush(QColor('white')) -ACTIVE_COLOR = QBrush(QColor(108, 255, 63)) -FLT_ICON = ":/icons/airborne" - - -class FileLoader(QThread): - completed = pyqtSignal(DataFrame, Path) - error = pyqtSignal(str) - - def __init__(self, path: Path, method: Callable, parent, **kwargs): - super().__init__(parent=parent) - self._path = Path(path) - self._method = method - self._kwargs = kwargs - - def run(self): - try: - sig = inspect.signature(self._method) - kwargs = {k: v for k, v in self._kwargs.items() if k in sig.parameters} - result = self._method(str(self._path), **kwargs) - except Exception as e: - self.error.emit(e) - else: - self.completed.emit(result, self._path) - - -class AirborneProjectController(BaseProjectController): - def __init__(self, project: AirborneProject, parent: QObject = None): - super().__init__(project) - self._parent = parent - self.setIcon(QIcon(":/icons/dgs")) - self.log = logging.getLogger(__name__) - - self.flights = StandardProjectContainer("Flights", FLT_ICON) - self.appendRow(self.flights) - - self.meters = StandardProjectContainer("Gravimeters") - self.appendRow(self.meters) - - self._flight_ctrl = WeakSet() - self._meter_ctrl = WeakSet() - self._active = None - - for flight in self.project.flights: - controller = FlightController(flight, controller=self) - self._flight_ctrl.add(controller) - self.flights.appendRow(controller) - - for meter in self.project.gravimeters: - controller = GravimeterController(meter, controller=self) - self._meter_ctrl.add(controller) - self.meters.appendRow(controller) - - self._bindings = [ - ('addAction', ('Set Project Name', self.set_name)), - ('addAction', ('Show in Explorer', self.show_in_explorer)) - ] - - def properties(self): - print(self.__class__.__name__) - - @property - def menu_bindings(self): - return self._bindings - - @property - def flight_ctrls(self) -> Generator[FlightController, None, None]: - for ctrl in self._flight_ctrl: - yield ctrl - - @property - def meter_ctrls(self) -> Generator[GravimeterController, None, None]: - for ctrl in self._meter_ctrl: - yield ctrl - - @property - def project(self) -> Union[GravityProject, AirborneProject]: - return super().project - - @property - def flight_model(self) -> QStandardItemModel: - return self.flights.internal_model - - @property - def meter_model(self) -> QStandardItemModel: - return self.meters.internal_model - - def add_child(self, child: Union[Flight, Gravimeter]): - self.project.add_child(child) - self.update() - if isinstance(child, Flight): - controller = FlightController(child, controller=self) - self._flight_ctrl.add(controller) - self.flights.appendRow(controller) - elif isinstance(child, Gravimeter): - controller = GravimeterController(child, controller=self) - self._meter_ctrl.add(controller) - self.meters.appendRow(controller) - else: - return - return controller - - def remove_child(self, child: Union[Flight, Gravimeter], row: int, confirm=True): - if confirm: - if not confirm_action("Confirm Deletion", "Are you sure you want to delete %s" - % child.name): - return - - self.project.remove_child(child.uid) - self.update() - if isinstance(child, Flight): - self.flights.removeRow(row) - elif isinstance(child, Gravimeter): - self.meters.removeRow(row) - - def get_child_controller(self, child: Union[Flight, Gravimeter]): - ctrl_map = {Flight: self.flight_ctrls, Gravimeter: self.meter_ctrls} - ctrls = ctrl_map.get(type(child), None) - if ctrls is None: - return None - - for ctrl in ctrls: - if ctrl.entity.uid == child.uid: - return ctrl - - def set_active(self, controller: FlightController, emit: bool = True): - if isinstance(controller, FlightController): - self._active = controller - - for ctrl in self._flight_ctrl: # type: QStandardItem - ctrl.setBackground(BASE_COLOR) - controller.setBackground(ACTIVE_COLOR) - if emit: - self.model().flight_changed.emit(controller) - - def set_name(self): - new_name = Containers.get_input("Set Project Name", "Enter a Project Name", self.project.name) - if new_name: - self.project.name = new_name - self.setData(new_name, Qt.DisplayRole) - - def show_in_explorer(self): - # TODO Linux KDE/Gnome file browser launch - ppath = str(self.project.path.resolve()) - if sys.platform == 'darwin': - script = 'oascript' - args = '-e tell application \"Finder\" -e activate -e select POSIX file \"' + ppath + '\" -e end tell' - elif sys.platform == 'win32': - script = 'explorer' - args = shlex.quote(ppath) - else: - self.log.warning("Platform %s is not supported for this action.", sys.platform) - return - - QProcess.startDetached(script, shlex.split(args)) - - def update(self): - """Emit an update event from the parent Model, signalling that - data has been added/removed/modified in the project.""" - self.model().project_changed.emit() - - @pyqtSlot(DataFrame, Path, name='_post_load') - def _post_load(self, flight: FlightController, data: DataFrame, src_path: Path): - try: - fltid, grpid, uid, path = self.hdf5store.save_data(data, flight.uid.base_uuid, 'gravity') - except IOError: - self.log.exception("Error writing data to HDF5 file.") - else: - datafile = DataFile(hdfpath=path, label='', group=grpid, source_path=src_path, uid=uid) - flight.add_child(datafile) - - return - - # TODO: Implement align_frames functionality as below - - gravity = flight.gravity - trajectory = flight.trajectory - if gravity is not None and trajectory is not None: - # align and crop the gravity and trajectory frames - - from lib.gravity_ingestor import DGS_AT1A_INTERP_FIELDS - from lib.trajectory_ingestor import TRAJECTORY_INTERP_FIELDS - - fields = DGS_AT1A_INTERP_FIELDS | TRAJECTORY_INTERP_FIELDS - new_gravity, new_trajectory = align_frames(gravity, trajectory, - interp_only=fields) - - # TODO: Fix this mess - # replace datasource objects - ds_attr = {'path': gravity.filename, 'dtype': gravity.dtype} - flight.remove_data(gravity) - self._add_data(new_gravity, ds_attr['dtype'], flight, - ds_attr['path']) - - ds_attr = {'path': trajectory.filename, - 'dtype': trajectory.dtype} - flight.remove_data(trajectory) - self._add_data(new_trajectory, ds_attr['dtype'], flight, - ds_attr['path']) - - def load_file(self, ftype: DataTypes, destination: Optional[FlightController] = None, browse=True): - dialog = AdvancedImportDialog(self, destination, ftype.value) - if browse: - dialog.browse() - - if dialog.exec_(): - flt_uid = dialog.flight # type: OID - fc = self.get_child_controller(flt_uid.reference) - if fc is None: - # Error - return - - if ftype == DataTypes.GRAVITY: - method = read_at1a - elif ftype == DataTypes.TRAJECTORY: - method = import_trajectory - else: - print("Unknown datatype %s" % str(ftype)) - return - # Note loader must be passed a QObject parent or it will crash - loader = FileLoader(dialog.path, method, parent=self._parent, **dialog.params) - loader.completed.connect(functools.partial(self._post_load, fc)) - - loader.start() - - # self.update() - - # Old code from Main: (for reference) - - # prog = self.show_progress_status(0, 0) - # prog.setValue(1) - - # def _on_err(result): - # err, exc = result - # prog.close() - # if err: - # msg = "Error loading {typ}::{fname}".format( - # typ=dtype.name.capitalize(), fname=params.get('path', '')) - # self.log.error(msg) - # else: - # msg = "Loaded {typ}::{fname}".format( - # typ=dtype.name.capitalize(), fname=params.get('path', '')) - # self.log.info(msg) - # - # ld = loader.get_loader(parent=self, dtype=dtype, on_complete=self._post_load, - # on_error=_on_err, **params) - # ld.start() - - -class MarineProjectController(BaseProjectController): - def load_file(self, ftype, destination: Optional[Any] = None) -> None: - pass - - def set_active(self, entity, **kwargs): - pass - - def add_child(self, child): - pass - - def remove_child(self, child, row: int, confirm: bool = True): - pass diff --git a/dgp/core/controllers/__init__.py b/dgp/core/controllers/__init__.py index e69de29..40a96af 100644 --- a/dgp/core/controllers/__init__.py +++ b/dgp/core/controllers/__init__.py @@ -0,0 +1 @@ +# -*- coding: utf-8 -*- diff --git a/dgp/core/controllers/controller_helpers.py b/dgp/core/controllers/controller_helpers.py new file mode 100644 index 0000000..20e62f6 --- /dev/null +++ b/dgp/core/controllers/controller_helpers.py @@ -0,0 +1,25 @@ +# -*- coding: utf-8 -*- +from typing import Optional, Union + +from PyQt5.QtCore import QObject +from PyQt5.QtWidgets import QWidget, QMessageBox, QInputDialog + +__all__ = ['confirm_action', 'get_input'] + + +def confirm_action(title: str, message: str, + parent: Optional[Union[QWidget, QObject]]=None): + dlg = QMessageBox(QMessageBox.Question, title, message, + QMessageBox.Yes | QMessageBox.No, parent=parent) + dlg.setDefaultButton(QMessageBox.No) + dlg.exec_() + return dlg.result() == QMessageBox.Yes + + +def get_input(title: str, label: str, text: str, parent: QWidget=None): + new_text, result = QInputDialog.getText(parent, title, label, text=text) + if result: + return new_text + return False + + diff --git a/dgp/core/controllers/controller_interfaces.py b/dgp/core/controllers/controller_interfaces.py new file mode 100644 index 0000000..05b4c22 --- /dev/null +++ b/dgp/core/controllers/controller_interfaces.py @@ -0,0 +1,58 @@ +# -*- coding: utf-8 -*- +from typing import Any + +from PyQt5.QtGui import QStandardItem + +from dgp.core.types.enumerations import DataTypes + + +""" +Interface module, while not exactly Pythonic, helps greatly by providing +interface definitions for the various controller modules, which often cannot +be imported as a type hints in various modules due to circular imports. +""" + + +class IBaseController(QStandardItem): + def add_child(self, child): + raise NotImplementedError + + def remove_child(self, child, row: int, confirm: bool = True): + raise NotImplementedError + + def set_active_child(self, child, emit: bool = True): + raise NotImplementedError + + def get_active_child(self): + raise NotImplementedError + + +class IAirborneController(IBaseController): + def add_flight(self): + raise NotImplementedError + + def add_gravimeter(self): + raise NotImplementedError + + def load_file(self, datatype: DataTypes): + raise NotImplementedError + + def set_parent(self, parent): + raise NotImplementedError + + @property + def flight_model(self): + raise NotImplementedError + + @property + def meter_model(self): + raise NotImplementedError + + +class IFlightController(IBaseController): + def set_name(self, name: str, interactive: bool = False): + raise NotImplementedError + + def set_attr(self, key: str, value: Any) -> None: + raise NotImplementedError + diff --git a/dgp/core/controllers/controller_mixins.py b/dgp/core/controllers/controller_mixins.py new file mode 100644 index 0000000..d3bf097 --- /dev/null +++ b/dgp/core/controllers/controller_mixins.py @@ -0,0 +1,19 @@ +# -*- coding: utf-8 -*- +from typing import Any + + +class PropertiesProxy: + """ + This mixin provides an interface to selectively allow getattr calls against the + proxied or underlying object in a wrapper class. getattr returns sucessfully only + for attributes decorated with @property in the proxied instance. + """ + @property + def proxied(self) -> object: + raise NotImplementedError + + def __getattr__(self, key: str): + klass = self.proxied.__class__ + if key in klass.__dict__ and isinstance(klass.__dict__[key], property): + return getattr(self.proxied, key) + raise AttributeError(klass.__name__ + " has not public attribute %s" % key) diff --git a/dgp/core/controllers/datafile_controller.py b/dgp/core/controllers/datafile_controller.py new file mode 100644 index 0000000..df52e59 --- /dev/null +++ b/dgp/core/controllers/datafile_controller.py @@ -0,0 +1,52 @@ +# -*- coding: utf-8 -*- +from PyQt5.QtCore import Qt +from PyQt5.QtGui import QStandardItem, QIcon, QColor, QBrush + +from dgp.core.controllers.controller_interfaces import IFlightController +from dgp.core.controllers.controller_mixins import PropertiesProxy +from dgp.core.models.data import DataFile + + +GRAV_ICON = ":/icons/gravity" +GPS_ICON = ":/icons/gps" + + +class DataFileController(QStandardItem, PropertiesProxy): + def __init__(self, datafile: DataFile, controller: IFlightController): + super().__init__() + self._datafile = datafile + self._controller: IFlightController = controller + self.setText(self._datafile.label) + self.setToolTip("Source Path: " + str(self._datafile.source_path)) + self.setData(self._datafile, role=Qt.UserRole) + if self._datafile.group == 'gravity': + self.setIcon(QIcon(GRAV_ICON)) + elif self._datafile.group == 'trajectory': + self.setIcon(QIcon(GPS_ICON)) + + self._bindings = [ + ('addAction', ('Delete <%s>' % self._datafile, + lambda: self._controller.remove_child(self._datafile, self.row()))), + ('addAction', ('Set Active', self._activate)) + ] + + @property + def menu_bindings(self): + return self._bindings + + @property + def data_group(self): + return self._datafile.group + + @property + def proxied(self) -> object: + return self._datafile + + def _activate(self): + self._controller.set_active_child(self) + + def set_active(self): + self.setBackground(QBrush(QColor("#85acea"))) + + def set_inactive(self): + self.setBackground(QBrush(QColor("white"))) diff --git a/dgp/core/controllers/flight_controller.py b/dgp/core/controllers/flight_controller.py new file mode 100644 index 0000000..03a5b9f --- /dev/null +++ b/dgp/core/controllers/flight_controller.py @@ -0,0 +1,250 @@ +# -*- coding: utf-8 -*- +import logging +from typing import Optional, Union, Any + +from PyQt5.QtCore import Qt +from PyQt5.QtGui import QStandardItem, QIcon, QStandardItemModel + +from dgp.core.controllers.controller_interfaces import IAirborneController, IFlightController +from dgp.core.controllers.datafile_controller import DataFileController +from dgp.core.controllers.flightline_controller import FlightLineController +from dgp.core.controllers.controller_mixins import PropertiesProxy +from gui.dialog.add_flight_dialog import AddFlightDialog +from . import controller_helpers as helpers +from .project_containers import ProjectFolder +from dgp.core.models.flight import Flight, FlightLine +from dgp.core.models.data import DataFile + +from core.types.enumerations import DataTypes + +FOLDER_ICON = ":/icons/folder_open.png" + + +class FlightController(IFlightController, PropertiesProxy): + """ + FlightController is a wrapper around :obj:`Flight` objects, and provides + a presentation and interaction layer for use of the underlying Flight + instance. + All user-space mutations or queries to a Flight object should be proxied + through a FlightController in order to ensure that the data and presentation + state is kept synchronized. + + As a child of :obj:`QStandardItem` the FlightController can be directly + added as a child to another QStandardItem, or as a row/child in a + :obj:`QAbstractItemModel` or :obj:`QStandardItemModel` + The default display behavior is to provide the Flights Name. + A :obj:`QIcon` or string path to a resource can be provided for decoration. + + The FlightController class also acts as a proxy to the underlying :obj:`Flight` + by implementing __getattr__, and allowing access to any @property decorated + methods of the Flight. + """ + inherit_context = True + + def __init__(self, flight: Flight, icon: Optional[str] = None, + controller: IAirborneController = None): + """Assemble the view/controller repr from the base flight object.""" + super().__init__() + self.log = logging.getLogger(__name__) + self._flight = flight + self.setData(flight, Qt.UserRole) + if icon is not None: + self.setIcon(QIcon(icon)) + self.setEditable(False) + + self._project_controller = controller + self._active = False + + self._flight_lines = ProjectFolder("Flight Lines", FOLDER_ICON) + self._data_files = ProjectFolder("Data Files", FOLDER_ICON) + self.appendRow(self._flight_lines) + self.appendRow(self._data_files) + + for line in self._flight.flight_lines: + self._flight_lines.appendRow(FlightLineController(line, self)) + + for file in self._flight.data_files: + self._data_files.appendRow(DataFileController(file, self)) + + # Think about multiple files, what to do? + self._active_gravity = None + self._active_trajectory = None + + self._bindings = [ + ('addAction', ('Set Active', lambda: self.controller.set_active_child(self))), + ('addAction', ('Import Gravity', + lambda: self.controller.load_file(DataTypes.GRAVITY))), + ('addAction', ('Import Trajectory', + lambda: self.controller.load_file(DataTypes.TRAJECTORY))), + ('addSeparator', ()), + ('addAction', ('Delete <%s>' % self._flight.name, + lambda: self.controller.remove_child(self._flight, self.row(), True))), + ('addAction', ('Rename Flight', lambda: self.set_name(interactive=True))), + ('addAction', ('Properties', + lambda: AddFlightDialog.from_existing(self, self.controller).exec_())) + ] + + self.update() + + def update(self): + self.setText(self._flight.name) + self.setToolTip(str(self._flight.uid)) + + def clone(self): + return FlightController(self._flight, controller=self.controller) + + @property + def controller(self) -> IAirborneController: + return self._project_controller + + @property + def menu_bindings(self): + """ + Returns + ------- + List[Tuple[str, Tuple[str, Callable],...] + A list of tuples declaring the QMenu construction parameters for this + object. + """ + return self._bindings + + @property + def gravity(self): + return None + + @property + def trajectory(self): + return None + + @property + def lines_model(self) -> QStandardItemModel: + """ + Returns the :obj:`QStandardItemModel` of FlightLine wrapper objects + """ + return self._flight_lines.internal_model + + def is_active(self): + return self.controller.get_active_child() == self + + def properties(self): + for i in range(self._data_files.rowCount()): + file = self._data_files.child(i) + if file._data.group == 'gravity': + print(file) + break + print(self.__class__.__name__) + + @property + def proxied(self) -> object: + return self._flight + + def set_active_child(self, child: DataFileController, emit: bool = True): + if not isinstance(child, DataFileController): + self.log.warning("Invalid child attempted to activate: %s", str(type(child))) + return + + for i in range(self._data_files.rowCount()): + ci: DataFileController = self._data_files.child(i, 0) + if ci.data_group == child.data_group: + ci.set_inactive() + + print(child.data_group) + if child.data_group == 'gravity': + self._active_gravity = child.data(Qt.UserRole) + child.set_active() + print("Set gravity child to active") + if child.data_group == 'trajectory': + self._active_trajectory = child.data(Qt.UserRole) + child.set_active() + + def get_active_child(self): + pass + + def add_child(self, child: Union[FlightLine, DataFile]) -> bool: + """ + Add a child to the underlying Flight, and to the model representation + for the appropriate child type. + + Parameters + ---------- + child: Union[FlightLine, DataFile] + The child model instance - either a FlightLine or DataFile + + Returns + ------- + bool: True on successful adding of child, + False on fail (e.g. child is not instance of FlightLine or DataFile + + """ + self._flight.add_child(child) + if isinstance(child, FlightLine): + self._flight_lines.appendRow(FlightLineController(child, self)) + elif isinstance(child, DataFile): + self._data_files.appendRow(DataFileController(child, self)) + else: + self.log.warning("Child of type %s could not be added to flight.", str(type(child))) + return False + return True + + def remove_child(self, child: Union[FlightLine, DataFile], row: int, confirm: bool = True) -> bool: + """ + Remove the specified child primitive from the underlying :obj:`Flight` + and from the respective model representation within the FlightController + + remove_child verifies that the given row number is valid, and that the data + at the given row == the given child. + + Parameters + ---------- + child: Union[FlightLine, DataFile] + The child primitive object to be removed + row: int + The row number of the child's controller wrapper + confirm: bool Default[True] + If True spawn a confirmation dialog requiring user input to confirm removal + + Returns + ------- + bool: + True on success + False on fail e.g. child is not a member of this Flight, or not of appropriate type, + or on a row/child mis-match + + """ + if confirm: + if not helpers.confirm_action("Confirm Deletion", + "Are you sure you want to delete %s" % str(child), + self.controller.get_parent()): + return False + + if not self._flight.remove_child(child): + return False + if isinstance(child, FlightLine): + self._flight_lines.removeRow(row) + elif isinstance(child, DataFile): + self._data_files.removeRow(row) + else: + self.log.warning("Child of type: (%s) not removed from flight.", str(type(child))) + return False + return True + + # TODO: Can't test this + def set_name(self, name: str = None, interactive=False): + if interactive: + name = helpers.get_input("Set Name", "Enter a new name:", self._flight.name) + if name: + self._flight.name = name + self.update() + + def set_attr(self, key: str, value: Any): + if key in Flight.__dict__ and isinstance(Flight.__dict__[key], property): + setattr(self._flight, key, value) + self.update() + else: + raise AttributeError("Attribute %s cannot be set for flight <%s>" % (key, str(self._flight))) + + def __hash__(self): + return hash(self._flight.uid) + + def __str__(self): + return str(self._flight) diff --git a/dgp/core/controllers/flightline_controller.py b/dgp/core/controllers/flightline_controller.py new file mode 100644 index 0000000..740f6b1 --- /dev/null +++ b/dgp/core/controllers/flightline_controller.py @@ -0,0 +1,28 @@ +# -*- coding: utf-8 -*- +from PyQt5.QtCore import Qt +from PyQt5.QtGui import QStandardItem, QIcon + +from dgp.core.controllers.controller_interfaces import IBaseController +from dgp.core.controllers.controller_mixins import PropertiesProxy +from dgp.core.models.flight import FlightLine + + +class FlightLineController(QStandardItem, PropertiesProxy): + + def __init__(self, flightline: FlightLine, controller: IBaseController): + super().__init__() + self._flightline = flightline + self._controller: IBaseController = controller + self.setData(flightline, Qt.UserRole) + self.setText(str(self._flightline)) + self.setIcon(QIcon(":/icons/AutosizeStretch_16x.png")) + + @property + def proxied(self) -> FlightLine: + return self._flightline + + def update_line(self, start, stop): + self._flightline.start = start + self._flightline.stop = stop + self.setText(str(self._flightline)) + diff --git a/dgp/core/controllers/MeterController.py b/dgp/core/controllers/gravimeter_controller.py similarity index 57% rename from dgp/core/controllers/MeterController.py rename to dgp/core/controllers/gravimeter_controller.py index b7e77bc..d3f9ad0 100644 --- a/dgp/core/controllers/MeterController.py +++ b/dgp/core/controllers/gravimeter_controller.py @@ -1,21 +1,20 @@ # -*- coding: utf-8 -*- -from typing import Optional - from PyQt5.QtCore import Qt from PyQt5.QtGui import QStandardItem -from core.controllers.BaseProjectController import BaseProjectController -from . import Containers -from core.models.meter import Gravimeter +from dgp.core.controllers.controller_helpers import get_input +from dgp.core.controllers.controller_mixins import PropertiesProxy +from dgp.core.models.meter import Gravimeter -class GravimeterController(QStandardItem): +class GravimeterController(QStandardItem, PropertiesProxy): def __init__(self, meter: Gravimeter, - controller: Optional[BaseProjectController]=None): + controller=None): super().__init__(meter.name) self.setEditable(False) + self.setData(meter, role=Qt.UserRole) - self._meter = meter + self._meter: Gravimeter = meter self._project_controller = controller self._bindings = [ @@ -25,28 +24,31 @@ def __init__(self, meter: Gravimeter, ] @property - def entity(self) -> Gravimeter: + def proxied(self) -> object: return self._meter @property - def controller(self) -> BaseProjectController: + def controller(self): return self._project_controller @property def menu_bindings(self): return self._bindings - def add_child(self, child) -> None: - pass - - def remove_child(self, child, row: int) -> None: - pass - def set_name(self): - name = Containers.get_input("Set Name", "Enter a new name:", self._meter.name) + name = get_input("Set Name", "Enter a new name:", self._meter.name) if name: self._meter.name = name self.setData(name, role=Qt.DisplayRole) + def clone(self): + return GravimeterController(self._meter, self._project_controller) + + def add_child(self, child) -> None: + raise ValueError("Gravimeter does not support child objects.") + + def remove_child(self, child, row: int) -> None: + raise ValueError("Gravimeter does not have child objects.") + def __hash__(self): return hash(self._meter.uid) diff --git a/dgp/core/controllers/HDFController.py b/dgp/core/controllers/hdf5_controller.py similarity index 79% rename from dgp/core/controllers/HDFController.py rename to dgp/core/controllers/hdf5_controller.py index 1f06093..a7c334e 100644 --- a/dgp/core/controllers/HDFController.py +++ b/dgp/core/controllers/hdf5_controller.py @@ -1,16 +1,15 @@ # -*- coding: utf-8 -*- import logging from pathlib import Path -from typing import Tuple -from uuid import uuid4 import tables from pandas import HDFStore, DataFrame -__all__ = ['HDF5', 'HDFController'] +from ..models.data import DataFile + +__all__ = ['HDFController'] # Define Data Types/Extensions -HDF5 = 'hdf5' HDF5_NAME = 'dgpdata.hdf5' @@ -34,6 +33,7 @@ class HDFController: def __init__(self, root_path, mkdir: bool = True): self.log = logging.getLogger(__name__) + logging.captureWarnings(True) self.dir = Path(root_path) if not self.dir.exists() and mkdir: self.dir.mkdir(parents=True) @@ -59,8 +59,7 @@ def hdf5path(self, value): def join_path(flightid, grpid, uid): return '/'.join(map(str, ['', flightid, grpid, uid])) - def save_data(self, data: DataFrame, flightid: str, grpid: str, - uid=None, **kwargs) -> Tuple[str, str, str, str]: + def save_data(self, data: DataFrame, datafile: DataFile): """ Save a Pandas Series or DataFrame to the HDF5 Store Data is added to the local cache, keyed by its generated UID. @@ -76,39 +75,32 @@ def save_data(self, data: DataFrame, flightid: str, grpid: str, ---------- data: Union[DataFrame, Series] Data object to be stored on disk via specified format. - flightid: String - grpid: String - Data group (Gravity/Trajectory etc) - uid: String - kwargs: - Optional Metadata attributes to attach to the data node + datafile: DataFile Returns ------- - str: - Generated UID assigned to data object saved. - """ + bool: + True on sucessful save - if uid is None: - uid = str(uuid4().hex) + Raises + ------ - self._cache[uid] = data + """ - # Generate path as /{flight_uid}/{grp_id}/uid - path = self.join_path(flightid, grpid, uid) + self._cache[datafile] = data with HDFStore(str(self.hdf5path)) as hdf: try: - hdf.put(path, data, format='fixed', data_columns=True) + hdf.put(datafile.hdfpath, data, format='fixed', data_columns=True) except (IOError, FileNotFoundError, PermissionError): self.log.exception("Exception writing file to HDF5 _store.") raise else: - self.log.info("Wrote file to HDF5 _store at node: %s", path) + self.log.info("Wrote file to HDF5 _store at node: %s", datafile.hdfpath) - return flightid, grpid, uid, path + return True - def load_data(self, flightid, grpid, uid): + def load_data(self, datafile: DataFile) -> DataFrame: """ Load data from a managed repository by UID This public method is a dispatch mechanism that calls the relevant @@ -118,14 +110,10 @@ def load_data(self, flightid, grpid, uid): Parameters ---------- - flightid: String - grpid: String - uid: String - UID of stored date to retrieve. Returns ------- - Union[DataFrame, Series, dict] + DataFrame Data retrieved from _store. Raises @@ -134,20 +122,22 @@ def load_data(self, flightid, grpid, uid): If data key (/flightid/grpid/uid) does not exist """ - if uid in self._cache: - self.log.info("Loading data {} from cache.".format(uid)) - return self._cache[uid] + if datafile in self._cache: + self.log.info("Loading data {} from cache.".format(datafile.uid)) + return self._cache[datafile] else: - path = self.join_path(flightid, grpid, uid) - self.log.debug("Loading data %s from hdf5 _store.", path) + self.log.debug("Loading data %s from hdf5 _store.", datafile.hdfpath) with HDFStore(str(self.hdf5path)) as hdf: - data = hdf.get(path) + data = hdf.get(datafile.hdfpath) # Cache the data - self._cache[uid] = data + self._cache[datafile] = data return data + def delete_data(self, file: DataFile) -> bool: + raise NotImplementedError + # See https://www.pytables.org/usersguide/libref/file_class.html#tables.File.set_node_attr # For more details on setting/retrieving metadata from hdf5 file using pytables # Note that the _v_ and _f_ prefixes are meant for instance variables and public methods diff --git a/dgp/core/controllers/project_containers.py b/dgp/core/controllers/project_containers.py new file mode 100644 index 0000000..5fe2280 --- /dev/null +++ b/dgp/core/controllers/project_containers.py @@ -0,0 +1,48 @@ +# -*- coding: utf-8 -*- +from PyQt5.QtGui import QStandardItem, QStandardItemModel, QIcon + + +class ProjectFolder(QStandardItem): + """Displayable StandardItem used for grouping sub-elements. + An internal QStandardItemModel representation is maintained for use in + other Qt elements e.g. a combo-box or list view. + + The ProjectFolder (QStandardItem) appends the source item to itself + for display in a view, a clone of the item is created and also added to + an internal QStandardItemModel for + """ + inherit_context = False + + def __init__(self, label: str, icon: str=None, inherit=False, **kwargs): + super().__init__(label) + if icon is not None: + self.setIcon(QIcon(icon)) + self._model = QStandardItemModel() + self.inherit_context = inherit + self.setEditable(False) + self._attributes = kwargs + + def properties(self): + print(self.__class__.__name__) + + @property + def internal_model(self) -> QStandardItemModel: + return self._model + + def appendRow(self, item: QStandardItem): + """ + Notes + ----- + The same item cannot be added to two parents as the parent attribute + is mutated when added. Use clone() or similar method to create two identical copies. + """ + super().appendRow(item) + self._model.appendRow(item.clone()) + + def removeRow(self, row: int): + super().removeRow(row) + self._model.removeRow(row) + + def __iter__(self): + pass + diff --git a/dgp/core/controllers/project_controllers.py b/dgp/core/controllers/project_controllers.py new file mode 100644 index 0000000..7acd0d7 --- /dev/null +++ b/dgp/core/controllers/project_controllers.py @@ -0,0 +1,351 @@ +# -*- coding: utf-8 -*- +import functools +import inspect +import logging +import shlex +import sys +from pathlib import Path +from weakref import WeakSet +from typing import Optional, Union, Generator, Callable, Any + +from PyQt5.QtCore import Qt, QProcess, QThread, pyqtSignal, QObject, pyqtSlot +from PyQt5.QtGui import QStandardItem, QBrush, QColor, QStandardItemModel, QIcon +from PyQt5.QtWidgets import QWidget +from pandas import DataFrame + +from dgp.core.controllers.controller_interfaces import IAirborneController +from . import project_containers +from .hdf5_controller import HDFController +from .flight_controller import FlightController +from .gravimeter_controller import GravimeterController +from .project_containers import ProjectFolder +from .controller_helpers import confirm_action +from dgp.core.controllers.controller_mixins import PropertiesProxy +from dgp.gui.dialog.add_flight_dialog import AddFlightDialog +from dgp.gui.dialog.add_gravimeter_dialog import AddGravimeterDialog +from dgp.gui.dialog.data_import_dialog import DataImportDialog +from dgp.core.models.data import DataFile +from dgp.core.models.flight import Flight +from dgp.core.models.meter import Gravimeter +from dgp.core.models.project import GravityProject, AirborneProject +from dgp.core.types.enumerations import DataTypes +from dgp.lib.etc import align_frames +from dgp.lib.gravity_ingestor import read_at1a +from dgp.lib.trajectory_ingestor import import_trajectory + +BASE_COLOR = QBrush(QColor('white')) +ACTIVE_COLOR = QBrush(QColor(108, 255, 63)) +FLT_ICON = ":/icons/airborne" +MTR_ICON = ":/icons/meter_config.png" + + +class FileLoader(QThread): + completed = pyqtSignal(DataFrame, Path) + error = pyqtSignal(str) + + def __init__(self, path: Path, method: Callable, parent, **kwargs): + super().__init__(parent=parent) + self._path = Path(path) + self._method = method + self._kwargs = kwargs + + def run(self): + try: + sig = inspect.signature(self._method) + kwargs = {k: v for k, v in self._kwargs.items() if k in sig.parameters} + result = self._method(str(self._path), **kwargs) + except Exception as e: + self.error.emit(str(e)) + else: + self.completed.emit(result, self._path) + + +class AirborneProjectController(IAirborneController, PropertiesProxy): + def __init__(self, project: AirborneProject, parent: QObject = None): + super().__init__(project.name) + self.log = logging.getLogger(__name__) + self._parent = parent + self._project = project + self._hdfc = HDFController(self._project.path) + self._active = None + + self.setIcon(QIcon(":/icons/dgs")) + self.setToolTip(str(self._project.path.resolve())) + self.setData(project, Qt.UserRole) + + self.flights = ProjectFolder("Flights", FLT_ICON) + self.appendRow(self.flights) + self.meters = ProjectFolder("Gravimeters", MTR_ICON) + self.appendRow(self.meters) + + self.flight_controls = WeakSet() + self.meter_controls = WeakSet() + + for flight in self.project.flights: + controller = FlightController(flight, controller=self) + self.flight_controls.add(controller) + self.flights.appendRow(controller) + + for meter in self.project.gravimeters: + controller = GravimeterController(meter, controller=self) + self.meter_controls.add(controller) + self.meters.appendRow(controller) + + self._bindings = [ + ('addAction', ('Set Project Name', self.set_name)), + ('addAction', ('Show in Explorer', self.show_in_explorer)) + ] + + @property + def proxied(self) -> object: + return self._project + + def properties(self): + print(self.__class__.__name__) + + def get_parent(self) -> Union[QObject, QWidget, None]: + return self._parent + + def set_parent(self, value: Union[QObject, QWidget]) -> None: + self._parent = value + + @property + def menu_bindings(self): + return self._bindings + + @property + def hdf5store(self) -> HDFController: + return self._hdfc + + @property + def flight_ctrls(self) -> Generator[FlightController, None, None]: + for ctrl in self.flight_controls: + yield ctrl + + @property + def project(self) -> Union[GravityProject, AirborneProject]: + return self._project + + @property + def meter_model(self) -> QStandardItemModel: + return self.meters.internal_model + + @property + def flight_model(self) -> QStandardItemModel: + return self.flights.internal_model + + def add_child(self, child: Union[Flight, Gravimeter]): + self.project.add_child(child) + self.update() + if isinstance(child, Flight): + controller = FlightController(child, controller=self) + self.flight_controls.add(controller) + self.flights.appendRow(controller) + elif isinstance(child, Gravimeter): + controller = GravimeterController(child, controller=self) + self.meter_controls.add(controller) + self.meters.appendRow(controller) + else: + print("Invalid child: " + str(type(child))) + return + return controller + + def remove_child(self, child: Union[Flight, Gravimeter], row: int, confirm=True): + if confirm: + if not confirm_action("Confirm Deletion", "Are you sure you want to delete %s" + % child.name): + return + self.project.remove_child(child.uid) + self.update() + if isinstance(child, Flight): + self.flights.removeRow(row) + elif isinstance(child, Gravimeter): + self.meters.removeRow(row) + + def get_child_controller(self, child: Union[Flight, Gravimeter]): + ctrl_map = {Flight: self.flight_ctrls, Gravimeter: self.meter_controls} + ctrls = ctrl_map.get(type(child), None) + if ctrls is None: + return None + + for ctrl in ctrls: + if ctrl.uid == child.uid: + return ctrl + + def get_active_child(self): + return self._active + + def set_active_child(self, child: FlightController, emit: bool = True): + if isinstance(child, FlightController): + self._active = child + for ctrl in self.flight_controls: # type: QStandardItem + ctrl.setBackground(BASE_COLOR) + child.setBackground(ACTIVE_COLOR) + if emit: + self.model().flight_changed.emit(child) + + def set_name(self): + new_name = project_containers.get_input("Set Project Name", "Enter a Project Name", self.project.name) + if new_name: + self.project.name = new_name + self.setData(new_name, Qt.DisplayRole) + + def show_in_explorer(self): + # TODO Linux KDE/Gnome file browser launch + ppath = str(self.project.path.resolve()) + if sys.platform == 'darwin': + script = 'oascript' + args = '-e tell application \"Finder\" -e activate -e select POSIX file \"' + ppath + '\" -e end tell' + elif sys.platform == 'win32': + script = 'explorer' + args = shlex.quote(ppath) + else: + self.log.warning("Platform %s is not supported for this action.", sys.platform) + return + + QProcess.startDetached(script, shlex.split(args)) + + def add_flight(self): + dlg = AddFlightDialog(project=self, parent=self.get_parent()) + return dlg.exec_() + + def add_gravimeter(self): + """Launch a Dialog to import a Gravimeter configuration""" + dlg = AddGravimeterDialog(self, parent=self.get_parent()) + return dlg.exec_() + + def update(self): + """Emit an update event from the parent Model, signalling that + data has been added/removed/modified in the project.""" + self.model().project_changed.emit() + + def _post_load(self, datafile: DataFile, data: DataFrame): + + + + # try: + # fltid, grpid, uid, path = self.hdf5store.save_data(data, flight.uid.base_uuid, 'gravity') + # except IOError: + # self.log.exception("Error writing data to HDF5 file.") + # else: + # datafile = DataFile(hdfpath=path, label='', group=grpid, source_path=src_path, uid=uid) + # flight.add_child(datafile) + + print(data.describe()) + print("Post_load loading datafile: " + str(datafile)) + if self.hdf5store.save_data(data, datafile): + print("Data saved to HDFStore") + + return + + # TODO: Implement align_frames functionality as below + + # gravity = flight.gravity + # trajectory = flight.trajectory + # if gravity is not None and trajectory is not None: + # # align and crop the gravity and trajectory frames + # + # from lib.gravity_ingestor import DGS_AT1A_INTERP_FIELDS + # from lib.trajectory_ingestor import TRAJECTORY_INTERP_FIELDS + # + # fields = DGS_AT1A_INTERP_FIELDS | TRAJECTORY_INTERP_FIELDS + # new_gravity, new_trajectory = align_frames(gravity, trajectory, + # interp_only=fields) + # + # # TODO: Fix this mess + # # replace datasource objects + # ds_attr = {'path': gravity.filename, 'dtype': gravity.dtype} + # flight.remove_data(gravity) + # self._add_data(new_gravity, ds_attr['dtype'], flight, + # ds_attr['path']) + # + # ds_attr = {'path': trajectory.filename, + # 'dtype': trajectory.dtype} + # flight.remove_data(trajectory) + # self._add_data(new_trajectory, ds_attr['dtype'], flight, + # ds_attr['path']) + + def load_file(self, datatype: DataTypes = DataTypes.GRAVITY): + def load_data(datafile: DataFile): + if datafile.group == 'gravity': + method = read_at1a + elif datafile.group == 'trajectory': + method = import_trajectory + else: + return + loader = FileLoader(datafile.source_path, method, parent=self.get_parent()) + loader.completed.connect(functools.partial(self._post_load, datafile)) + loader.start() + + dlg = DataImportDialog(self, datatype, parent=self.get_parent()) + dlg.load.connect(load_data) + dlg.exec_() + + # Deprecated - dialog will handle + def _load_file(self, ftype: DataTypes, destination: Optional[FlightController] = None, browse=True): + pass + # dialog = DataImportDialog(self, ftype, self.get_parent()) + # dialog.set_initial_flight(self.active_entity) + # if browse: + # dialog.browse() + # + # if dialog.exec_(): + # flt_uid = dialog.flight # type: OID + # fc = self.get_child_controller(flt_uid.reference) + # if fc is None: + # # Error + # return + # + # if ftype == DataTypes.GRAVITY: + # method = read_at1a + # elif ftype == DataTypes.TRAJECTORY: + # method = import_trajectory + # else: + # print("Unknown datatype %s" % str(ftype)) + # return + # # Note loader must be passed a QObject parent or it will crash + # loader = FileLoader(dialog.path, method, parent=self._parent, **dialog.params) + # loader.completed.connect(functools.partial(self._post_load, fc)) + # + # loader.start() + + # self.update() + + # Old code from Main: (for reference) + + # prog = self.show_progress_status(0, 0) + # prog.setValue(1) + + # def _on_err(result): + # err, exc = result + # prog.close() + # if err: + # msg = "Error loading {typ}::{fname}".format( + # typ=dtype.name.capitalize(), fname=params.get('path', '')) + # self.log.error(msg) + # else: + # msg = "Loaded {typ}::{fname}".format( + # typ=dtype.name.capitalize(), fname=params.get('path', '')) + # self.log.info(msg) + # + # ld = loader.get_loader(parent=self, dtype=dtype, on_complete=self._post_load, + # on_error=_on_err, **params) + # ld.start() + + def save(self): + print("Saving project") + return self.project.to_json(indent=2, to_file=True) + + +class MarineProjectController: + def load_file(self, ftype, destination: Optional[Any] = None) -> None: + pass + + def set_active(self, entity, **kwargs): + pass + + def add_child(self, child): + pass + + def remove_child(self, child, row: int, confirm: bool = True): + pass diff --git a/dgp/gui/loader.py b/dgp/gui/loader.py index 582bc8b..58cb3e9 100644 --- a/dgp/gui/loader.py +++ b/dgp/gui/loader.py @@ -1,6 +1,5 @@ # coding: utf-8 -import sys import pathlib import logging import inspect @@ -8,10 +7,9 @@ from PyQt5.QtCore import pyqtSignal, QThread, pyqtBoundSignal from pandas import DataFrame -import dgp.lib.types as types import dgp.lib.gravity_ingestor as gi import dgp.lib.trajectory_ingestor as ti -from dgp.lib.enums import DataTypes, GravityTypes +from core.types.enumerations import DataTypes, GravityTypes _log = logging.getLogger(__name__) diff --git a/dgp/gui/models.py b/dgp/gui/models.py index b31f011..e98ac88 100644 --- a/dgp/gui/models.py +++ b/dgp/gui/models.py @@ -3,16 +3,14 @@ import logging from typing import List, Dict -import PyQt5.QtCore as QtCore -import PyQt5.Qt as Qt -from PyQt5.QtWidgets import QWidget +from PyQt5.QtCore import Qt, QAbstractTableModel +from PyQt5.QtWidgets import QWidget, QStyledItemDelegate, QStyleOptionViewItem from PyQt5.QtCore import (QModelIndex, QVariant, QAbstractItemModel, QMimeData, pyqtSignal, pyqtBoundSignal) from PyQt5.QtGui import QIcon, QBrush, QColor from PyQt5.QtWidgets import QComboBox -from dgp.gui.qtenum import QtDataRoles, QtItemFlags -from dgp.lib.types import (AbstractTreeItem, BaseTreeItem, TreeItem, +from dgp.lib.types import (AbstractTreeItem, BaseTreeItem, ChannelListHeader, DataChannel) from dgp.lib.etc import gen_uuid @@ -32,7 +30,7 @@ _log = logging.getLogger(__name__) -class TableModel(QtCore.QAbstractTableModel): +class TableModel(QAbstractTableModel): """Simple table model of key: value pairs. Parameters ---------- @@ -94,7 +92,7 @@ def columnCount(self, parent=None, *args, **kwargs): return 0 def data(self, index: QModelIndex, role=None): - if role == QtCore.Qt.DisplayRole or role == QtCore.Qt.EditRole: + if role == Qt.DisplayRole or role == Qt.EditRole: if index.row() == 0: try: return self._header[index.column()] @@ -104,29 +102,29 @@ def data(self, index: QModelIndex, role=None): val = self._data[index.row() - 1][index.column()] return val except IndexError: - return QtCore.QVariant() - return QtCore.QVariant() + return QVariant() + return QVariant() def flags(self, index: QModelIndex): - flags = QtCore.Qt.ItemIsSelectable | QtCore.Qt.ItemIsEnabled + flags = Qt.ItemIsSelectable | Qt.ItemIsEnabled if index.row() == 0 and self._editable: # Allow editing of first row (Column headers) - flags = flags | QtCore.Qt.ItemIsEditable + flags = flags | Qt.ItemIsEditable return flags def headerData(self, section, orientation, role=None): - if role == QtCore.Qt.DisplayRole and orientation == QtCore.Qt.Horizontal: + if role == Qt.DisplayRole and orientation == Qt.Horizontal: if self._header_index: return section - return QtCore.QVariant() + return QVariant() # Required implementations of super class for editable table ############# - def setData(self, index: QtCore.QModelIndex, value, role=QtCore.Qt.EditRole): + def setData(self, index: QModelIndex, value, role=Qt.EditRole): """Basic implementation of editable model. This doesn't propagate the changes to the underlying object upon which the model was based though (yet)""" - if index.isValid() and role == QtCore.Qt.EditRole: + if index.isValid() and role == Qt.EditRole: self._header[index.column()] = value idx = self.index(0, index.column()) self.dataChanged.emit(idx, idx) @@ -141,6 +139,7 @@ class BaseTreeModel(QAbstractItemModel): QAbstractItemModel. Subclasses must provide implementations for update() and data() """ + def __init__(self, root_item: AbstractTreeItem, parent=None): super().__init__(parent=parent) self._root = root_item @@ -149,7 +148,7 @@ def __init__(self, root_item: AbstractTreeItem, parent=None): def root(self): return self._root - def parent(self, index: QModelIndex=QModelIndex()) -> QModelIndex: + def parent(self, index: QModelIndex = QModelIndex()) -> QModelIndex: """ Returns the parent QModelIndex of the given index. If the object referenced by index does not have a parent (i.e. the root node) an @@ -167,13 +166,13 @@ def parent(self, index: QModelIndex=QModelIndex()) -> QModelIndex: def update(self, *args, **kwargs): raise NotImplementedError("Update must be implemented by subclass.") - def data(self, index: QModelIndex, role: QtDataRoles=None): + def data(self, index: QModelIndex, role=None): raise NotImplementedError("data() must be implemented by subclass.") - def flags(self, index: QModelIndex) -> QtItemFlags: + def flags(self, index: QModelIndex): """Return the flags of an item at the specified ModelIndex""" if not index.isValid(): - return QtItemFlags.NoItemFlags + return Qt.NoItemFlags return index.internalPointer().flags() @staticmethod @@ -182,17 +181,16 @@ def itemFromIndex(index: QModelIndex) -> AbstractTreeItem: return index.internalPointer() @staticmethod - def columnCount(parent: QModelIndex=QModelIndex(), *args, **kwargs): + def columnCount(parent: QModelIndex = QModelIndex(), *args, **kwargs): return 1 - def headerData(self, section: int, orientation, role: - QtDataRoles=QtDataRoles.DisplayRole): + def headerData(self, section: int, orientation, role=Qt.DisplayRole): """The Root item is responsible for first row header data""" - if orientation == QtCore.Qt.Horizontal and role == QtDataRoles.DisplayRole: + if orientation == Qt.Horizontal and role == Qt.DisplayRole: return self._root.data(role) return QVariant() - def index(self, row: int, col: int, parent: QModelIndex=QModelIndex(), + def index(self, row: int, col: int, parent: QModelIndex = QModelIndex(), *args, **kwargs) -> QModelIndex: """Return a QModelIndex for the item at the given row and column, with the specified parent.""" @@ -210,89 +208,16 @@ def index(self, row: int, col: int, parent: QModelIndex=QModelIndex(), else: return QModelIndex() - def rowCount(self, parent: QModelIndex=QModelIndex(), *args, **kwargs): + def rowCount(self, parent: QModelIndex = QModelIndex(), *args, **kwargs): # *args and **kwargs are necessary to suppress Qt Warnings if parent.isValid(): return parent.internalPointer().child_count() return self._root.child_count() -class ProjectModel(BaseTreeModel): - """Heirarchial (Tree) Project Model with a single root node.""" - def __init__(self, project: AbstractTreeItem, parent=None): - self.log = logging.getLogger(__name__) - super().__init__(TreeItem("root"), parent=parent) - # assert isinstance(project, GravityProject) - project.model = self - self.root.append_child(project) - self.layoutChanged.emit() - self.log.info("Project Tree Model initialized.") - - def update(self, action=None, obj=None, **kwargs): - """ - This simply emits layout change events to update the view. - By calling layoutAboutToBeChanged and layoutChanged, we force an - update of the entire layout that uses this model. - This may not be as efficient as utilizing the beginInsertRows and - endInsertRows signals to specify an exact range to update, but with - the amount of data this model expects to handle, this is far less - error prone and unnoticable. - """ - self.layoutAboutToBeChanged.emit() - self.log.info("ProjectModel Layout Changed") - self.layoutChanged.emit() - return - - def data(self, index: QModelIndex, role: QtDataRoles=None): - """ - Returns data for the requested index and role. - We do some processing here to encapsulate data within Qt Types where - necesarry, as TreeItems in general do not import Qt Modules due to - the possibilty of pickling them. - Parameters - ---------- - index: QModelIndex - Model Index of item to retrieve data from - role: QtDataRoles - Role from the enumerated Qt roles in dgp/gui/qtenum.py - (Re-implemented for convenience and portability from PyQt defs) - Returns - ------- - QVariant - Returns QVariant data depending on specified role. - If role is UserRole, the underlying AbstractTreeItem object is - returned - """ - if not index.isValid(): - return QVariant() - item = index.internalPointer() # type: AbstractTreeItem - data = item.data(role) - - # To guard against cases where role is not implemented - if data is None: - return QVariant() - - # Role encapsulation - if role == QtDataRoles.UserRole: - return item - if role == QtDataRoles.DecorationRole: - # Construct Decoration object from data - return QIcon(data) - if role in [QtDataRoles.BackgroundRole, QtDataRoles.ForegroundRole]: - return QBrush(QColor(data)) - - return QVariant(data) - - def flags(self, index: QModelIndex) -> QtItemFlags: - """Return the flags of an item at the specified ModelIndex""" - if not index.isValid(): - return QtItemFlags.NoItemFlags - # return index.internalPointer().flags() - return QtCore.Qt.ItemIsSelectable | QtCore.Qt.ItemIsEnabled - - -class ComboEditDelegate(Qt.QStyledItemDelegate): +class ComboEditDelegate(QStyledItemDelegate): """Used by the Advanced Import Dialog to enable column selection/setting.""" + def __init__(self, options=None, parent=None): super().__init__(parent=parent) self._options = options @@ -305,7 +230,7 @@ def options(self): def options(self, value): self._options = list(value) - def createEditor(self, parent: QWidget, option: Qt.QStyleOptionViewItem, + def createEditor(self, parent: QWidget, option: QStyleOptionViewItem, index: QModelIndex) -> QWidget: """ Create the Editor widget. The widget will be populated with data in @@ -346,18 +271,18 @@ def setEditorData(self, editor: QWidget, index: QModelIndex) -> None: if not isinstance(editor, QComboBox): print("Unexpected editor type.") return - value = str(index.model().data(index, QtDataRoles.EditRole)) + value = str(index.model().data(index, Qt.EditRole)) if self.options is None: # Construct set of choices by scanning columns at the current row model = index.model() row = index.row() - self.options = {model.data(model.index(row, c), QtDataRoles.EditRole) + self.options = {model.data(model.index(row, c), Qt.EditRole) for c in range(model.columnCount())} for choice in self.options: editor.addItem(choice) - index = editor.findText(value, flags=Qt.Qt.MatchExactly) + index = editor.findText(value, flags=Qt.MatchExactly) if editor.currentIndex() == index: return elif index == -1: @@ -372,12 +297,12 @@ def setModelData(self, editor: QComboBox, model: QAbstractItemModel, index: QModelIndex) -> None: value = str(editor.currentText()) try: - model.setData(index, value, QtCore.Qt.EditRole) + model.setData(index, value, Qt.EditRole) except: _log.exception("Exception setting model data") def updateEditorGeometry(self, editor: QWidget, - option: Qt.QStyleOptionViewItem, + option: QStyleOptionViewItem, index: QModelIndex) -> None: editor.setGeometry(option.rect) @@ -475,7 +400,7 @@ def update(self) -> None: self.layoutAboutToBeChanged.emit() self.layoutChanged.emit() - def data(self, index: QModelIndex, role: QtDataRoles=None): + def data(self, index: QModelIndex, role=None): item_data = index.internalPointer().data(role) if item_data is None: return QVariant() @@ -484,18 +409,18 @@ def data(self, index: QModelIndex, role: QtDataRoles=None): def flags(self, index: QModelIndex): item = index.internalPointer() if item == self.root: - return QtCore.Qt.NoItemFlags + return Qt.NoItemFlags if isinstance(item, DataChannel): - return (QtCore.Qt.ItemIsDragEnabled | QtCore.Qt.ItemIsSelectable | - QtCore.Qt.ItemIsEnabled) - return (QtCore.Qt.ItemIsSelectable | QtCore.Qt.ItemIsEnabled | - QtCore.Qt.ItemIsDropEnabled) + return (Qt.ItemIsDragEnabled | Qt.ItemIsSelectable | + Qt.ItemIsEnabled) + return (Qt.ItemIsSelectable | Qt.ItemIsEnabled | + Qt.ItemIsDropEnabled) def supportedDropActions(self): - return QtCore.Qt.MoveAction + return Qt.MoveAction def supportedDragActions(self): - return QtCore.Qt.MoveAction + return Qt.MoveAction def dropMimeData(self, data: QMimeData, action, row, col, parent: QModelIndex) -> bool: @@ -540,7 +465,7 @@ def dropMimeData(self, data: QMimeData, action, row, col, UID could not be looked up in the model channels. """ - if action != QtCore.Qt.MoveAction: + if action != Qt.MoveAction: return False if not data.hasText(): return False @@ -556,9 +481,9 @@ def dropMimeData(self, data: QMimeData, action, row, col, # If we can get a valid ChannelListHeader, set destination to # that, and recreate the parent QModelIndex to point refer to the # new destination. - if row-1 in self._plots: - destination = self._plots[row-1] - parent = self.index(row-1, 0) + if row - 1 in self._plots: + destination = self._plots[row - 1] + parent = self.index(row - 1, 0) else: # Otherwise if the object was in the _default header, and is # dropped in an invalid manner, don't remove and re-add it to diff --git a/dgp/gui/ui/.gitignore b/dgp/gui/ui/.gitignore new file mode 100644 index 0000000..f104652 --- /dev/null +++ b/dgp/gui/ui/.gitignore @@ -0,0 +1 @@ +*.py diff --git a/dgp/gui/ui/add_flight_dialog.py b/dgp/gui/ui/add_flight_dialog.py deleted file mode 100644 index 9b473e6..0000000 --- a/dgp/gui/ui/add_flight_dialog.py +++ /dev/null @@ -1,156 +0,0 @@ -# -*- coding: utf-8 -*- - -# Form implementation generated from reading ui file 'dgp/gui/ui\add_flight_dialog.ui' -# -# Created by: PyQt5 UI code generator 5.9 -# -# WARNING! All changes made in this file will be lost! - -from PyQt5 import QtCore, QtGui, QtWidgets - -class Ui_NewFlight(object): - def setupUi(self, NewFlight): - NewFlight.setObjectName("NewFlight") - NewFlight.resize(550, 466) - NewFlight.setMaximumSize(QtCore.QSize(16777215, 16777215)) - icon = QtGui.QIcon() - icon.addPixmap(QtGui.QPixmap(":/icons/airborne"), QtGui.QIcon.Normal, QtGui.QIcon.Off) - NewFlight.setWindowIcon(icon) - NewFlight.setSizeGripEnabled(True) - self.verticalLayout = QtWidgets.QVBoxLayout(NewFlight) - self.verticalLayout.setObjectName("verticalLayout") - self.form_input_layout = QtWidgets.QFormLayout() - self.form_input_layout.setObjectName("form_input_layout") - self.label_name = QtWidgets.QLabel(NewFlight) - self.label_name.setObjectName("label_name") - self.form_input_layout.setWidget(1, QtWidgets.QFormLayout.LabelRole, self.label_name) - self.text_name = QtWidgets.QLineEdit(NewFlight) - self.text_name.setObjectName("text_name") - self.form_input_layout.setWidget(1, QtWidgets.QFormLayout.FieldRole, self.text_name) - self.label_date = QtWidgets.QLabel(NewFlight) - self.label_date.setObjectName("label_date") - self.form_input_layout.setWidget(2, QtWidgets.QFormLayout.LabelRole, self.label_date) - self.date_flight = QtWidgets.QDateEdit(NewFlight) - self.date_flight.setCalendarPopup(True) - self.date_flight.setDate(QtCore.QDate(2017, 1, 1)) - self.date_flight.setObjectName("date_flight") - self.form_input_layout.setWidget(2, QtWidgets.QFormLayout.FieldRole, self.date_flight) - self.label_meter = QtWidgets.QLabel(NewFlight) - self.label_meter.setObjectName("label_meter") - self.form_input_layout.setWidget(3, QtWidgets.QFormLayout.LabelRole, self.label_meter) - self.label_uuid = QtWidgets.QLabel(NewFlight) - self.label_uuid.setObjectName("label_uuid") - self.form_input_layout.setWidget(4, QtWidgets.QFormLayout.LabelRole, self.label_uuid) - self.combo_meter = QtWidgets.QComboBox(NewFlight) - self.combo_meter.setObjectName("combo_meter") - self.form_input_layout.setWidget(3, QtWidgets.QFormLayout.FieldRole, self.combo_meter) - self.text_uuid = QtWidgets.QLineEdit(NewFlight) - self.text_uuid.setEnabled(False) - self.text_uuid.setReadOnly(True) - self.text_uuid.setObjectName("text_uuid") - self.form_input_layout.setWidget(4, QtWidgets.QFormLayout.FieldRole, self.text_uuid) - self.label_gravity = QtWidgets.QLabel(NewFlight) - self.label_gravity.setObjectName("label_gravity") - self.form_input_layout.setWidget(5, QtWidgets.QFormLayout.LabelRole, self.label_gravity) - self.gravity_layout = QtWidgets.QHBoxLayout() - self.gravity_layout.setObjectName("gravity_layout") - self.path_gravity = QtWidgets.QLineEdit(NewFlight) - sizePolicy = QtWidgets.QSizePolicy(QtWidgets.QSizePolicy.Minimum, QtWidgets.QSizePolicy.Preferred) - sizePolicy.setHorizontalStretch(2) - sizePolicy.setVerticalStretch(0) - sizePolicy.setHeightForWidth(self.path_gravity.sizePolicy().hasHeightForWidth()) - self.path_gravity.setSizePolicy(sizePolicy) - self.path_gravity.setBaseSize(QtCore.QSize(200, 0)) - self.path_gravity.setObjectName("path_gravity") - self.gravity_layout.addWidget(self.path_gravity) - self.cb_grav_format = QtWidgets.QComboBox(NewFlight) - self.cb_grav_format.setObjectName("cb_grav_format") - self.gravity_layout.addWidget(self.cb_grav_format) - self.browse_gravity = QtWidgets.QToolButton(NewFlight) - sizePolicy = QtWidgets.QSizePolicy(QtWidgets.QSizePolicy.Maximum, QtWidgets.QSizePolicy.Preferred) - sizePolicy.setHorizontalStretch(0) - sizePolicy.setVerticalStretch(0) - sizePolicy.setHeightForWidth(self.browse_gravity.sizePolicy().hasHeightForWidth()) - self.browse_gravity.setSizePolicy(sizePolicy) - self.browse_gravity.setMaximumSize(QtCore.QSize(16777215, 16777215)) - self.browse_gravity.setBaseSize(QtCore.QSize(50, 0)) - self.browse_gravity.setObjectName("browse_gravity") - self.gravity_layout.addWidget(self.browse_gravity) - self.form_input_layout.setLayout(5, QtWidgets.QFormLayout.FieldRole, self.gravity_layout) - self.label_gps = QtWidgets.QLabel(NewFlight) - self.label_gps.setObjectName("label_gps") - self.form_input_layout.setWidget(6, QtWidgets.QFormLayout.LabelRole, self.label_gps) - self.gps_layout = QtWidgets.QHBoxLayout() - self.gps_layout.setObjectName("gps_layout") - self.path_gps = QtWidgets.QLineEdit(NewFlight) - sizePolicy = QtWidgets.QSizePolicy(QtWidgets.QSizePolicy.Minimum, QtWidgets.QSizePolicy.Preferred) - sizePolicy.setHorizontalStretch(2) - sizePolicy.setVerticalStretch(0) - sizePolicy.setHeightForWidth(self.path_gps.sizePolicy().hasHeightForWidth()) - self.path_gps.setSizePolicy(sizePolicy) - self.path_gps.setBaseSize(QtCore.QSize(200, 0)) - self.path_gps.setObjectName("path_gps") - self.gps_layout.addWidget(self.path_gps) - self.cb_gps_format = QtWidgets.QComboBox(NewFlight) - self.cb_gps_format.setObjectName("cb_gps_format") - self.gps_layout.addWidget(self.cb_gps_format) - self.browse_gps = QtWidgets.QToolButton(NewFlight) - sizePolicy = QtWidgets.QSizePolicy(QtWidgets.QSizePolicy.Maximum, QtWidgets.QSizePolicy.Preferred) - sizePolicy.setHorizontalStretch(0) - sizePolicy.setVerticalStretch(0) - sizePolicy.setHeightForWidth(self.browse_gps.sizePolicy().hasHeightForWidth()) - self.browse_gps.setSizePolicy(sizePolicy) - self.browse_gps.setMaximumSize(QtCore.QSize(16777215, 16777215)) - self.browse_gps.setBaseSize(QtCore.QSize(50, 0)) - self.browse_gps.setObjectName("browse_gps") - self.gps_layout.addWidget(self.browse_gps) - self.form_input_layout.setLayout(6, QtWidgets.QFormLayout.FieldRole, self.gps_layout) - self.verticalLayout.addLayout(self.form_input_layout) - spacerItem = QtWidgets.QSpacerItem(20, 40, QtWidgets.QSizePolicy.Minimum, QtWidgets.QSizePolicy.Expanding) - self.verticalLayout.addItem(spacerItem) - self.label_flight_param = QtWidgets.QLabel(NewFlight) - self.label_flight_param.setObjectName("label_flight_param") - self.verticalLayout.addWidget(self.label_flight_param) - self.flight_params = QtWidgets.QTableView(NewFlight) - self.flight_params.setObjectName("flight_params") - self.verticalLayout.addWidget(self.flight_params) - self.label_message = QtWidgets.QLabel(NewFlight) - self.label_message.setObjectName("label_message") - self.verticalLayout.addWidget(self.label_message) - self.buttons_dialog = QtWidgets.QDialogButtonBox(NewFlight) - self.buttons_dialog.setStandardButtons(QtWidgets.QDialogButtonBox.Cancel|QtWidgets.QDialogButtonBox.Ok) - self.buttons_dialog.setObjectName("buttons_dialog") - self.verticalLayout.addWidget(self.buttons_dialog) - self.label_name.setBuddy(self.text_name) - self.label_date.setBuddy(self.date_flight) - self.label_meter.setBuddy(self.combo_meter) - self.label_gravity.setBuddy(self.path_gravity) - self.label_gps.setBuddy(self.path_gps) - - self.retranslateUi(NewFlight) - self.buttons_dialog.rejected.connect(NewFlight.reject) - self.buttons_dialog.accepted.connect(NewFlight.accept) - QtCore.QMetaObject.connectSlotsByName(NewFlight) - NewFlight.setTabOrder(self.path_gravity, self.browse_gravity) - NewFlight.setTabOrder(self.browse_gravity, self.path_gps) - NewFlight.setTabOrder(self.path_gps, self.browse_gps) - - def retranslateUi(self, NewFlight): - _translate = QtCore.QCoreApplication.translate - NewFlight.setWindowTitle(_translate("NewFlight", "Add Flight")) - self.label_name.setText(_translate("NewFlight", "Flight Name (Reference)*")) - self.label_date.setText(_translate("NewFlight", "Flight Date")) - self.date_flight.setDisplayFormat(_translate("NewFlight", "yyyy-MM-dd")) - self.label_meter.setText(_translate("NewFlight", "Gravity Meter")) - self.label_uuid.setText(_translate("NewFlight", "Flight UUID")) - self.label_gravity.setText(_translate("NewFlight", "Gravity Data")) - self.browse_gravity.setToolTip(_translate("NewFlight", "Browse")) - self.browse_gravity.setStatusTip(_translate("NewFlight", "Browse")) - self.browse_gravity.setText(_translate("NewFlight", "...")) - self.label_gps.setText(_translate("NewFlight", "GPS Data")) - self.browse_gps.setToolTip(_translate("NewFlight", "Browse")) - self.browse_gps.setText(_translate("NewFlight", "...")) - self.label_flight_param.setText(_translate("NewFlight", "Flight Parameters")) - self.label_message.setText(_translate("NewFlight", "

*required fields

")) - -from dgp import resources_rc diff --git a/dgp/gui/ui/advanced_data_import.py b/dgp/gui/ui/advanced_data_import.py deleted file mode 100644 index 2b09719..0000000 --- a/dgp/gui/ui/advanced_data_import.py +++ /dev/null @@ -1,231 +0,0 @@ -# -*- coding: utf-8 -*- - -# Form implementation generated from reading ui file 'dgp/gui/ui\advanced_data_import.ui' -# -# Created by: PyQt5 UI code generator 5.9 -# -# WARNING! All changes made in this file will be lost! - -from PyQt5 import QtCore, QtGui, QtWidgets - -class Ui_AdvancedImportData(object): - def setupUi(self, AdvancedImportData): - AdvancedImportData.setObjectName("AdvancedImportData") - AdvancedImportData.resize(450, 418) - sizePolicy = QtWidgets.QSizePolicy(QtWidgets.QSizePolicy.Minimum, QtWidgets.QSizePolicy.Preferred) - sizePolicy.setHorizontalStretch(0) - sizePolicy.setVerticalStretch(0) - sizePolicy.setHeightForWidth(AdvancedImportData.sizePolicy().hasHeightForWidth()) - AdvancedImportData.setSizePolicy(sizePolicy) - AdvancedImportData.setSizeIncrement(QtCore.QSize(50, 0)) - icon = QtGui.QIcon() - icon.addPixmap(QtGui.QPixmap(":/icons/new_file.png"), QtGui.QIcon.Normal, QtGui.QIcon.Off) - AdvancedImportData.setWindowIcon(icon) - self.verticalLayout = QtWidgets.QVBoxLayout(AdvancedImportData) - self.verticalLayout.setContentsMargins(5, -1, 5, -1) - self.verticalLayout.setSpacing(0) - self.verticalLayout.setObjectName("verticalLayout") - self.group_data = QtWidgets.QGroupBox(AdvancedImportData) - sizePolicy = QtWidgets.QSizePolicy(QtWidgets.QSizePolicy.Minimum, QtWidgets.QSizePolicy.Preferred) - sizePolicy.setHorizontalStretch(0) - sizePolicy.setVerticalStretch(0) - sizePolicy.setHeightForWidth(self.group_data.sizePolicy().hasHeightForWidth()) - self.group_data.setSizePolicy(sizePolicy) - self.group_data.setTitle("") - self.group_data.setObjectName("group_data") - self.formLayout = QtWidgets.QFormLayout(self.group_data) - self.formLayout.setObjectName("formLayout") - self.label_data_path = QtWidgets.QLabel(self.group_data) - self.label_data_path.setObjectName("label_data_path") - self.formLayout.setWidget(0, QtWidgets.QFormLayout.LabelRole, self.label_data_path) - self.hbox_data_path = QtWidgets.QHBoxLayout() - self.hbox_data_path.setObjectName("hbox_data_path") - self.line_path = QtWidgets.QLineEdit(self.group_data) - sizePolicy = QtWidgets.QSizePolicy(QtWidgets.QSizePolicy.Expanding, QtWidgets.QSizePolicy.Preferred) - sizePolicy.setHorizontalStretch(0) - sizePolicy.setVerticalStretch(0) - sizePolicy.setHeightForWidth(self.line_path.sizePolicy().hasHeightForWidth()) - self.line_path.setSizePolicy(sizePolicy) - self.line_path.setReadOnly(True) - self.line_path.setObjectName("line_path") - self.hbox_data_path.addWidget(self.line_path) - self.btn_browse = QtWidgets.QToolButton(self.group_data) - sizePolicy = QtWidgets.QSizePolicy(QtWidgets.QSizePolicy.Minimum, QtWidgets.QSizePolicy.Minimum) - sizePolicy.setHorizontalStretch(0) - sizePolicy.setVerticalStretch(0) - sizePolicy.setHeightForWidth(self.btn_browse.sizePolicy().hasHeightForWidth()) - self.btn_browse.setSizePolicy(sizePolicy) - font = QtGui.QFont() - font.setPointSize(9) - self.btn_browse.setFont(font) - self.btn_browse.setObjectName("btn_browse") - self.hbox_data_path.addWidget(self.btn_browse) - self.formLayout.setLayout(0, QtWidgets.QFormLayout.FieldRole, self.hbox_data_path) - self.label_flight = QtWidgets.QLabel(self.group_data) - self.label_flight.setObjectName("label_flight") - self.formLayout.setWidget(1, QtWidgets.QFormLayout.LabelRole, self.label_flight) - self.combo_flights = QtWidgets.QComboBox(self.group_data) - sizePolicy = QtWidgets.QSizePolicy(QtWidgets.QSizePolicy.Preferred, QtWidgets.QSizePolicy.Minimum) - sizePolicy.setHorizontalStretch(0) - sizePolicy.setVerticalStretch(0) - sizePolicy.setHeightForWidth(self.combo_flights.sizePolicy().hasHeightForWidth()) - self.combo_flights.setSizePolicy(sizePolicy) - self.combo_flights.setObjectName("combo_flights") - self.formLayout.setWidget(1, QtWidgets.QFormLayout.FieldRole, self.combo_flights) - self.label_meter = QtWidgets.QLabel(self.group_data) - self.label_meter.setObjectName("label_meter") - self.formLayout.setWidget(2, QtWidgets.QFormLayout.LabelRole, self.label_meter) - self.combo_meters = QtWidgets.QComboBox(self.group_data) - sizePolicy = QtWidgets.QSizePolicy(QtWidgets.QSizePolicy.Preferred, QtWidgets.QSizePolicy.Minimum) - sizePolicy.setHorizontalStretch(0) - sizePolicy.setVerticalStretch(0) - sizePolicy.setHeightForWidth(self.combo_meters.sizePolicy().hasHeightForWidth()) - self.combo_meters.setSizePolicy(sizePolicy) - self.combo_meters.setObjectName("combo_meters") - self.formLayout.setWidget(2, QtWidgets.QFormLayout.FieldRole, self.combo_meters) - self.verticalLayout.addWidget(self.group_data) - spacerItem = QtWidgets.QSpacerItem(20, 20, QtWidgets.QSizePolicy.Minimum, QtWidgets.QSizePolicy.Fixed) - self.verticalLayout.addItem(spacerItem) - self.label_file_props = QtWidgets.QLabel(AdvancedImportData) - font = QtGui.QFont() - font.setPointSize(10) - self.label_file_props.setFont(font) - self.label_file_props.setTextInteractionFlags(QtCore.Qt.NoTextInteraction) - self.label_file_props.setObjectName("label_file_props") - self.verticalLayout.addWidget(self.label_file_props) - self.grid_info_area = QtWidgets.QGridLayout() - self.grid_info_area.setContentsMargins(5, -1, 5, 10) - self.grid_info_area.setObjectName("grid_info_area") - self.label_data_end = QtWidgets.QLabel(AdvancedImportData) - self.label_data_end.setObjectName("label_data_end") - self.grid_info_area.addWidget(self.label_data_end, 0, 2, 1, 1, QtCore.Qt.AlignHCenter) - self.label_line_count = QtWidgets.QLabel(AdvancedImportData) - self.label_line_count.setObjectName("label_line_count") - self.grid_info_area.addWidget(self.label_line_count, 4, 0, 1, 1, QtCore.Qt.AlignLeft) - self.field_line_count = QtWidgets.QLabel(AdvancedImportData) - self.field_line_count.setObjectName("field_line_count") - self.grid_info_area.addWidget(self.field_line_count, 4, 1, 1, 1, QtCore.Qt.AlignHCenter) - self.field_fsize = QtWidgets.QLabel(AdvancedImportData) - self.field_fsize.setObjectName("field_fsize") - self.grid_info_area.addWidget(self.field_fsize, 3, 1, 1, 1, QtCore.Qt.AlignHCenter) - self.check_trim = QtWidgets.QCheckBox(AdvancedImportData) - self.check_trim.setEnabled(False) - self.check_trim.setObjectName("check_trim") - self.grid_info_area.addWidget(self.check_trim, 1, 0, 1, 1) - self.dte_data_end = QtWidgets.QDateTimeEdit(AdvancedImportData) - self.dte_data_end.setEnabled(False) - self.dte_data_end.setObjectName("dte_data_end") - self.grid_info_area.addWidget(self.dte_data_end, 0, 3, 1, 1) - self.label_col_count = QtWidgets.QLabel(AdvancedImportData) - self.label_col_count.setObjectName("label_col_count") - self.grid_info_area.addWidget(self.label_col_count, 3, 2, 1, 1) - self.dte_data_start = QtWidgets.QDateTimeEdit(AdvancedImportData) - self.dte_data_start.setEnabled(False) - sizePolicy = QtWidgets.QSizePolicy(QtWidgets.QSizePolicy.Minimum, QtWidgets.QSizePolicy.Fixed) - sizePolicy.setHorizontalStretch(0) - sizePolicy.setVerticalStretch(0) - sizePolicy.setHeightForWidth(self.dte_data_start.sizePolicy().hasHeightForWidth()) - self.dte_data_start.setSizePolicy(sizePolicy) - self.dte_data_start.setObjectName("dte_data_start") - self.grid_info_area.addWidget(self.dte_data_start, 0, 1, 1, 1, QtCore.Qt.AlignHCenter) - self.label_data_start = QtWidgets.QLabel(AdvancedImportData) - self.label_data_start.setObjectName("label_data_start") - self.grid_info_area.addWidget(self.label_data_start, 0, 0, 1, 1) - self.label_file_size = QtWidgets.QLabel(AdvancedImportData) - self.label_file_size.setObjectName("label_file_size") - self.grid_info_area.addWidget(self.label_file_size, 3, 0, 1, 1, QtCore.Qt.AlignLeft) - self.field_col_count = QtWidgets.QLabel(AdvancedImportData) - self.field_col_count.setObjectName("field_col_count") - self.grid_info_area.addWidget(self.field_col_count, 3, 3, 1, 1, QtCore.Qt.AlignHCenter) - spacerItem1 = QtWidgets.QSpacerItem(20, 20, QtWidgets.QSizePolicy.Minimum, QtWidgets.QSizePolicy.Fixed) - self.grid_info_area.addItem(spacerItem1, 2, 0, 1, 1) - self.verticalLayout.addLayout(self.grid_info_area) - spacerItem2 = QtWidgets.QSpacerItem(20, 40, QtWidgets.QSizePolicy.Minimum, QtWidgets.QSizePolicy.Expanding) - self.verticalLayout.addItem(spacerItem2) - self.hbox_editcols = QtWidgets.QHBoxLayout() - self.hbox_editcols.setObjectName("hbox_editcols") - self.label_data_fmt = QtWidgets.QLabel(AdvancedImportData) - sizePolicy = QtWidgets.QSizePolicy(QtWidgets.QSizePolicy.Maximum, QtWidgets.QSizePolicy.Preferred) - sizePolicy.setHorizontalStretch(0) - sizePolicy.setVerticalStretch(0) - sizePolicy.setHeightForWidth(self.label_data_fmt.sizePolicy().hasHeightForWidth()) - self.label_data_fmt.setSizePolicy(sizePolicy) - self.label_data_fmt.setObjectName("label_data_fmt") - self.hbox_editcols.addWidget(self.label_data_fmt) - self.cb_data_fmt = QtWidgets.QComboBox(AdvancedImportData) - sizePolicy = QtWidgets.QSizePolicy(QtWidgets.QSizePolicy.Minimum, QtWidgets.QSizePolicy.Minimum) - sizePolicy.setHorizontalStretch(0) - sizePolicy.setVerticalStretch(0) - sizePolicy.setHeightForWidth(self.cb_data_fmt.sizePolicy().hasHeightForWidth()) - self.cb_data_fmt.setSizePolicy(sizePolicy) - self.cb_data_fmt.setObjectName("cb_data_fmt") - self.hbox_editcols.addWidget(self.cb_data_fmt) - spacerItem3 = QtWidgets.QSpacerItem(40, 20, QtWidgets.QSizePolicy.Maximum, QtWidgets.QSizePolicy.Minimum) - self.hbox_editcols.addItem(spacerItem3) - self.btn_edit_cols = QtWidgets.QPushButton(AdvancedImportData) - self.btn_edit_cols.setEnabled(False) - sizePolicy = QtWidgets.QSizePolicy(QtWidgets.QSizePolicy.Minimum, QtWidgets.QSizePolicy.Minimum) - sizePolicy.setHorizontalStretch(0) - sizePolicy.setVerticalStretch(0) - sizePolicy.setHeightForWidth(self.btn_edit_cols.sizePolicy().hasHeightForWidth()) - self.btn_edit_cols.setSizePolicy(sizePolicy) - font = QtGui.QFont() - font.setPointSize(9) - self.btn_edit_cols.setFont(font) - icon1 = QtGui.QIcon() - icon1.addPixmap(QtGui.QPixmap(":/images/assets/meter_config.png"), QtGui.QIcon.Normal, QtGui.QIcon.Off) - self.btn_edit_cols.setIcon(icon1) - self.btn_edit_cols.setObjectName("btn_edit_cols") - self.hbox_editcols.addWidget(self.btn_edit_cols) - self.verticalLayout.addLayout(self.hbox_editcols) - spacerItem4 = QtWidgets.QSpacerItem(20, 50, QtWidgets.QSizePolicy.Minimum, QtWidgets.QSizePolicy.MinimumExpanding) - self.verticalLayout.addItem(spacerItem4) - self.label_msg = QtWidgets.QLabel(AdvancedImportData) - self.label_msg.setText("") - self.label_msg.setObjectName("label_msg") - self.verticalLayout.addWidget(self.label_msg) - self.btn_dialog = QtWidgets.QDialogButtonBox(AdvancedImportData) - sizePolicy = QtWidgets.QSizePolicy(QtWidgets.QSizePolicy.Expanding, QtWidgets.QSizePolicy.Minimum) - sizePolicy.setHorizontalStretch(0) - sizePolicy.setVerticalStretch(0) - sizePolicy.setHeightForWidth(self.btn_dialog.sizePolicy().hasHeightForWidth()) - self.btn_dialog.setSizePolicy(sizePolicy) - self.btn_dialog.setOrientation(QtCore.Qt.Horizontal) - self.btn_dialog.setStandardButtons(QtWidgets.QDialogButtonBox.Cancel|QtWidgets.QDialogButtonBox.Ok) - self.btn_dialog.setCenterButtons(False) - self.btn_dialog.setObjectName("btn_dialog") - self.verticalLayout.addWidget(self.btn_dialog) - self.label_data_path.setBuddy(self.line_path) - self.label_flight.setBuddy(self.combo_flights) - self.label_meter.setBuddy(self.combo_meters) - self.label_data_end.setBuddy(self.dte_data_end) - self.label_data_start.setBuddy(self.dte_data_start) - self.label_data_fmt.setBuddy(self.cb_data_fmt) - - self.retranslateUi(AdvancedImportData) - self.btn_dialog.accepted.connect(AdvancedImportData.accept) - self.btn_dialog.rejected.connect(AdvancedImportData.reject) - QtCore.QMetaObject.connectSlotsByName(AdvancedImportData) - - def retranslateUi(self, AdvancedImportData): - _translate = QtCore.QCoreApplication.translate - AdvancedImportData.setWindowTitle(_translate("AdvancedImportData", "Advanced Import")) - self.label_data_path.setText(_translate("AdvancedImportData", "Path*")) - self.line_path.setPlaceholderText(_translate("AdvancedImportData", "Browse to File")) - self.btn_browse.setText(_translate("AdvancedImportData", "...")) - self.label_flight.setText(_translate("AdvancedImportData", "Flight")) - self.label_meter.setText(_translate("AdvancedImportData", "Meter")) - self.label_file_props.setText(_translate("AdvancedImportData", "File Properties:")) - self.label_data_end.setText(_translate("AdvancedImportData", "Data End")) - self.label_line_count.setText(_translate("AdvancedImportData", "Line Count")) - self.field_line_count.setText(_translate("AdvancedImportData", "0")) - self.field_fsize.setText(_translate("AdvancedImportData", "0 Mib")) - self.check_trim.setText(_translate("AdvancedImportData", "Trim")) - self.label_col_count.setText(_translate("AdvancedImportData", "Column Count:")) - self.label_data_start.setText(_translate("AdvancedImportData", "Data Start")) - self.label_file_size.setText(_translate("AdvancedImportData", "File Size (Mib)")) - self.field_col_count.setText(_translate("AdvancedImportData", "0")) - self.label_data_fmt.setText(_translate("AdvancedImportData", "Column Format:")) - self.btn_edit_cols.setText(_translate("AdvancedImportData", "Edit Columns")) - -from dgp import resources_rc diff --git a/dgp/gui/ui/channel_select_dialog.py b/dgp/gui/ui/channel_select_dialog.py deleted file mode 100644 index 8011364..0000000 --- a/dgp/gui/ui/channel_select_dialog.py +++ /dev/null @@ -1,39 +0,0 @@ -# -*- coding: utf-8 -*- - -# Form implementation generated from reading ui file 'dgp/gui/ui\channel_select_dialog.ui' -# -# Created by: PyQt5 UI code generator 5.9 -# -# WARNING! All changes made in this file will be lost! - -from PyQt5 import QtCore, QtGui, QtWidgets - -class Ui_ChannelSelection(object): - def setupUi(self, ChannelSelection): - ChannelSelection.setObjectName("ChannelSelection") - ChannelSelection.resize(304, 300) - self.verticalLayout = QtWidgets.QVBoxLayout(ChannelSelection) - self.verticalLayout.setObjectName("verticalLayout") - self.channel_treeview = QtWidgets.QTreeView(ChannelSelection) - self.channel_treeview.setDragEnabled(True) - self.channel_treeview.setDragDropMode(QtWidgets.QAbstractItemView.InternalMove) - self.channel_treeview.setDefaultDropAction(QtCore.Qt.MoveAction) - self.channel_treeview.setUniformRowHeights(True) - self.channel_treeview.setObjectName("channel_treeview") - self.channel_treeview.header().setVisible(False) - self.verticalLayout.addWidget(self.channel_treeview) - self.dialog_buttons = QtWidgets.QDialogButtonBox(ChannelSelection) - self.dialog_buttons.setOrientation(QtCore.Qt.Horizontal) - self.dialog_buttons.setStandardButtons(QtWidgets.QDialogButtonBox.Close|QtWidgets.QDialogButtonBox.Reset) - self.dialog_buttons.setObjectName("dialog_buttons") - self.verticalLayout.addWidget(self.dialog_buttons) - - self.retranslateUi(ChannelSelection) - self.dialog_buttons.accepted.connect(ChannelSelection.accept) - self.dialog_buttons.rejected.connect(ChannelSelection.reject) - QtCore.QMetaObject.connectSlotsByName(ChannelSelection) - - def retranslateUi(self, ChannelSelection): - _translate = QtCore.QCoreApplication.translate - ChannelSelection.setWindowTitle(_translate("ChannelSelection", "Select Data Channels")) - diff --git a/dgp/gui/ui/data_import_dialog.py b/dgp/gui/ui/data_import_dialog.py deleted file mode 100644 index 4c4caf4..0000000 --- a/dgp/gui/ui/data_import_dialog.py +++ /dev/null @@ -1,85 +0,0 @@ -# -*- coding: utf-8 -*- - -# Form implementation generated from reading ui file 'dgp/gui/ui\data_import_dialog.ui' -# -# Created by: PyQt5 UI code generator 5.9 -# -# WARNING! All changes made in this file will be lost! - -from PyQt5 import QtCore, QtGui, QtWidgets - -class Ui_Dialog(object): - def setupUi(self, Dialog): - Dialog.setObjectName("Dialog") - Dialog.setWindowModality(QtCore.Qt.ApplicationModal) - Dialog.resize(418, 500) - sizePolicy = QtWidgets.QSizePolicy(QtWidgets.QSizePolicy.Fixed, QtWidgets.QSizePolicy.Fixed) - sizePolicy.setHorizontalStretch(0) - sizePolicy.setVerticalStretch(0) - sizePolicy.setHeightForWidth(Dialog.sizePolicy().hasHeightForWidth()) - Dialog.setSizePolicy(sizePolicy) - Dialog.setMinimumSize(QtCore.QSize(300, 500)) - Dialog.setMaximumSize(QtCore.QSize(600, 1200)) - icon = QtGui.QIcon() - icon.addPixmap(QtGui.QPixmap(":/images/assets/geoid_icon.png"), QtGui.QIcon.Normal, QtGui.QIcon.Off) - Dialog.setWindowIcon(icon) - self.gridLayout = QtWidgets.QGridLayout(Dialog) - self.gridLayout.setObjectName("gridLayout") - self.group_datatype = QtWidgets.QGroupBox(Dialog) - self.group_datatype.setObjectName("group_datatype") - self.verticalLayout = QtWidgets.QVBoxLayout(self.group_datatype) - self.verticalLayout.setObjectName("verticalLayout") - self.type_gravity = QtWidgets.QRadioButton(self.group_datatype) - self.type_gravity.setChecked(True) - self.type_gravity.setObjectName("type_gravity") - self.group_radiotype = QtWidgets.QButtonGroup(Dialog) - self.group_radiotype.setObjectName("group_radiotype") - self.group_radiotype.addButton(self.type_gravity) - self.verticalLayout.addWidget(self.type_gravity) - self.type_gps = QtWidgets.QRadioButton(self.group_datatype) - self.type_gps.setObjectName("type_gps") - self.group_radiotype.addButton(self.type_gps) - self.verticalLayout.addWidget(self.type_gps) - self.gridLayout.addWidget(self.group_datatype, 5, 0, 1, 1) - self.buttonBox = QtWidgets.QDialogButtonBox(Dialog) - self.buttonBox.setOrientation(QtCore.Qt.Horizontal) - self.buttonBox.setStandardButtons(QtWidgets.QDialogButtonBox.Cancel|QtWidgets.QDialogButtonBox.Ok) - self.buttonBox.setObjectName("buttonBox") - self.gridLayout.addWidget(self.buttonBox, 8, 0, 1, 3) - self.combo_flights = QtWidgets.QComboBox(Dialog) - self.combo_flights.setObjectName("combo_flights") - self.gridLayout.addWidget(self.combo_flights, 3, 0, 1, 1) - self.combo_meters = QtWidgets.QComboBox(Dialog) - self.combo_meters.setObjectName("combo_meters") - self.gridLayout.addWidget(self.combo_meters, 4, 0, 1, 1) - self.field_path = QtWidgets.QLineEdit(Dialog) - self.field_path.setReadOnly(True) - self.field_path.setObjectName("field_path") - self.gridLayout.addWidget(self.field_path, 1, 0, 1, 1) - self.tree_directory = QtWidgets.QTreeView(Dialog) - self.tree_directory.setObjectName("tree_directory") - self.gridLayout.addWidget(self.tree_directory, 7, 0, 1, 3) - self.button_browse = QtWidgets.QPushButton(Dialog) - self.button_browse.setObjectName("button_browse") - self.gridLayout.addWidget(self.button_browse, 1, 2, 1, 1) - self.label_3 = QtWidgets.QLabel(Dialog) - self.label_3.setObjectName("label_3") - self.gridLayout.addWidget(self.label_3, 3, 2, 1, 1) - self.label = QtWidgets.QLabel(Dialog) - self.label.setObjectName("label") - self.gridLayout.addWidget(self.label, 4, 2, 1, 1) - - self.retranslateUi(Dialog) - self.buttonBox.rejected.connect(Dialog.reject) - QtCore.QMetaObject.connectSlotsByName(Dialog) - - def retranslateUi(self, Dialog): - _translate = QtCore.QCoreApplication.translate - Dialog.setWindowTitle(_translate("Dialog", "Import Data")) - self.group_datatype.setTitle(_translate("Dialog", "Data Type")) - self.type_gravity.setText(_translate("Dialog", "&Gravity Data")) - self.type_gps.setText(_translate("Dialog", "G&PS Data")) - self.button_browse.setText(_translate("Dialog", "&Browse")) - self.label_3.setText(_translate("Dialog", "

Flight

")) - self.label.setText(_translate("Dialog", "

Meter

")) - diff --git a/dgp/gui/ui/edit_import_view.py b/dgp/gui/ui/edit_import_view.py deleted file mode 100644 index f0a547f..0000000 --- a/dgp/gui/ui/edit_import_view.py +++ /dev/null @@ -1,110 +0,0 @@ -# -*- coding: utf-8 -*- - -# Form implementation generated from reading ui file 'dgp/gui/ui\edit_import_view.ui' -# -# Created by: PyQt5 UI code generator 5.9 -# -# WARNING! All changes made in this file will be lost! - -from PyQt5 import QtCore, QtGui, QtWidgets - -class Ui_Dialog(object): - def setupUi(self, Dialog): - Dialog.setObjectName("Dialog") - Dialog.resize(304, 296) - sizePolicy = QtWidgets.QSizePolicy(QtWidgets.QSizePolicy.MinimumExpanding, QtWidgets.QSizePolicy.Preferred) - sizePolicy.setHorizontalStretch(0) - sizePolicy.setVerticalStretch(0) - sizePolicy.setHeightForWidth(Dialog.sizePolicy().hasHeightForWidth()) - Dialog.setSizePolicy(sizePolicy) - Dialog.setSizeGripEnabled(True) - Dialog.setModal(True) - self.verticalLayout = QtWidgets.QVBoxLayout(Dialog) - self.verticalLayout.setObjectName("verticalLayout") - self.label_instruction = QtWidgets.QLabel(Dialog) - self.label_instruction.setObjectName("label_instruction") - self.verticalLayout.addWidget(self.label_instruction) - self.hbox_tools = QtWidgets.QHBoxLayout() - self.hbox_tools.setObjectName("hbox_tools") - self.btn_autosize = QtWidgets.QToolButton(Dialog) - self.btn_autosize.setText("") - icon = QtGui.QIcon() - icon.addPixmap(QtGui.QPixmap(":/icons/AutosizeStretch_16x.png"), QtGui.QIcon.Normal, QtGui.QIcon.Off) - self.btn_autosize.setIcon(icon) - self.btn_autosize.setObjectName("btn_autosize") - self.hbox_tools.addWidget(self.btn_autosize) - self.chb_has_header = QtWidgets.QCheckBox(Dialog) - self.chb_has_header.setObjectName("chb_has_header") - self.hbox_tools.addWidget(self.chb_has_header) - self.label = QtWidgets.QLabel(Dialog) - self.label.setObjectName("label") - self.hbox_tools.addWidget(self.label, 0, QtCore.Qt.AlignRight) - self.cob_field_set = QtWidgets.QComboBox(Dialog) - self.cob_field_set.setObjectName("cob_field_set") - self.hbox_tools.addWidget(self.cob_field_set) - self.verticalLayout.addLayout(self.hbox_tools) - self.table_col_edit = QtWidgets.QTableView(Dialog) - sizePolicy = QtWidgets.QSizePolicy(QtWidgets.QSizePolicy.MinimumExpanding, QtWidgets.QSizePolicy.Expanding) - sizePolicy.setHorizontalStretch(0) - sizePolicy.setVerticalStretch(0) - sizePolicy.setHeightForWidth(self.table_col_edit.sizePolicy().hasHeightForWidth()) - self.table_col_edit.setSizePolicy(sizePolicy) - self.table_col_edit.setSizeAdjustPolicy(QtWidgets.QAbstractScrollArea.AdjustToContentsOnFirstShow) - self.table_col_edit.setEditTriggers(QtWidgets.QAbstractItemView.AnyKeyPressed|QtWidgets.QAbstractItemView.DoubleClicked|QtWidgets.QAbstractItemView.EditKeyPressed|QtWidgets.QAbstractItemView.SelectedClicked) - self.table_col_edit.setObjectName("table_col_edit") - self.table_col_edit.horizontalHeader().setVisible(True) - self.table_col_edit.horizontalHeader().setStretchLastSection(True) - self.verticalLayout.addWidget(self.table_col_edit) - self.label_msg = QtWidgets.QLabel(Dialog) - self.label_msg.setText("") - self.label_msg.setObjectName("label_msg") - self.verticalLayout.addWidget(self.label_msg) - self.hbox_dlg_btns = QtWidgets.QHBoxLayout() - self.hbox_dlg_btns.setObjectName("hbox_dlg_btns") - self.btn_reset = QtWidgets.QPushButton(Dialog) - sizePolicy = QtWidgets.QSizePolicy(QtWidgets.QSizePolicy.Maximum, QtWidgets.QSizePolicy.Preferred) - sizePolicy.setHorizontalStretch(0) - sizePolicy.setVerticalStretch(0) - sizePolicy.setHeightForWidth(self.btn_reset.sizePolicy().hasHeightForWidth()) - self.btn_reset.setSizePolicy(sizePolicy) - self.btn_reset.setObjectName("btn_reset") - self.hbox_dlg_btns.addWidget(self.btn_reset) - spacerItem = QtWidgets.QSpacerItem(40, 20, QtWidgets.QSizePolicy.Expanding, QtWidgets.QSizePolicy.Minimum) - self.hbox_dlg_btns.addItem(spacerItem) - self.btn_cancel = QtWidgets.QPushButton(Dialog) - sizePolicy = QtWidgets.QSizePolicy(QtWidgets.QSizePolicy.Minimum, QtWidgets.QSizePolicy.Preferred) - sizePolicy.setHorizontalStretch(0) - sizePolicy.setVerticalStretch(0) - sizePolicy.setHeightForWidth(self.btn_cancel.sizePolicy().hasHeightForWidth()) - self.btn_cancel.setSizePolicy(sizePolicy) - self.btn_cancel.setObjectName("btn_cancel") - self.hbox_dlg_btns.addWidget(self.btn_cancel) - self.btn_confirm = QtWidgets.QPushButton(Dialog) - sizePolicy = QtWidgets.QSizePolicy(QtWidgets.QSizePolicy.Minimum, QtWidgets.QSizePolicy.Preferred) - sizePolicy.setHorizontalStretch(0) - sizePolicy.setVerticalStretch(0) - sizePolicy.setHeightForWidth(self.btn_confirm.sizePolicy().hasHeightForWidth()) - self.btn_confirm.setSizePolicy(sizePolicy) - self.btn_confirm.setObjectName("btn_confirm") - self.hbox_dlg_btns.addWidget(self.btn_confirm) - self.verticalLayout.addLayout(self.hbox_dlg_btns) - - self.retranslateUi(Dialog) - self.btn_cancel.clicked.connect(Dialog.reject) - self.btn_confirm.clicked.connect(Dialog.accept) - self.btn_autosize.clicked.connect(self.table_col_edit.resizeColumnsToContents) - QtCore.QMetaObject.connectSlotsByName(Dialog) - - def retranslateUi(self, Dialog): - _translate = QtCore.QCoreApplication.translate - Dialog.setWindowTitle(_translate("Dialog", "Data Preview")) - self.label_instruction.setText(_translate("Dialog", "Double Click Column Headers to Change Order")) - self.btn_autosize.setToolTip(_translate("Dialog", "Autosize Column Widths")) - self.chb_has_header.setToolTip(_translate("Dialog", "Check to skip first line in file")) - self.chb_has_header.setText(_translate("Dialog", "Has header")) - self.label.setText(_translate("Dialog", "Field Set:")) - self.btn_reset.setText(_translate("Dialog", "Reset")) - self.btn_cancel.setText(_translate("Dialog", "Cancel")) - self.btn_confirm.setText(_translate("Dialog", "Confirm")) - -from dgp import resources_rc diff --git a/dgp/gui/ui/info_dialog.py b/dgp/gui/ui/info_dialog.py deleted file mode 100644 index 9e0271b..0000000 --- a/dgp/gui/ui/info_dialog.py +++ /dev/null @@ -1,34 +0,0 @@ -# -*- coding: utf-8 -*- - -# Form implementation generated from reading ui file 'dgp/gui/ui\info_dialog.ui' -# -# Created by: PyQt5 UI code generator 5.9 -# -# WARNING! All changes made in this file will be lost! - -from PyQt5 import QtCore, QtGui, QtWidgets - -class Ui_InfoDialog(object): - def setupUi(self, InfoDialog): - InfoDialog.setObjectName("InfoDialog") - InfoDialog.resize(213, 331) - self.verticalLayout = QtWidgets.QVBoxLayout(InfoDialog) - self.verticalLayout.setObjectName("verticalLayout") - self.table_info = QtWidgets.QTableView(InfoDialog) - self.table_info.setObjectName("table_info") - self.verticalLayout.addWidget(self.table_info) - self.buttonBox = QtWidgets.QDialogButtonBox(InfoDialog) - self.buttonBox.setOrientation(QtCore.Qt.Horizontal) - self.buttonBox.setStandardButtons(QtWidgets.QDialogButtonBox.Ok) - self.buttonBox.setObjectName("buttonBox") - self.verticalLayout.addWidget(self.buttonBox) - - self.retranslateUi(InfoDialog) - self.buttonBox.accepted.connect(InfoDialog.accept) - self.buttonBox.rejected.connect(InfoDialog.reject) - QtCore.QMetaObject.connectSlotsByName(InfoDialog) - - def retranslateUi(self, InfoDialog): - _translate = QtCore.QCoreApplication.translate - InfoDialog.setWindowTitle(_translate("InfoDialog", "Info")) - diff --git a/dgp/gui/ui/main_window.py b/dgp/gui/ui/main_window.py deleted file mode 100644 index 4b6966c..0000000 --- a/dgp/gui/ui/main_window.py +++ /dev/null @@ -1,327 +0,0 @@ -# -*- coding: utf-8 -*- - -# Form implementation generated from reading ui file 'dgp/gui/ui\main_window.ui' -# -# Created by: PyQt5 UI code generator 5.9 -# -# WARNING! All changes made in this file will be lost! - -from PyQt5 import QtCore, QtGui, QtWidgets - -class Ui_MainWindow(object): - def setupUi(self, MainWindow): - MainWindow.setObjectName("MainWindow") - MainWindow.resize(1490, 1135) - MainWindow.setMinimumSize(QtCore.QSize(800, 600)) - icon = QtGui.QIcon() - icon.addPixmap(QtGui.QPixmap(":/images/geoid"), QtGui.QIcon.Normal, QtGui.QIcon.Off) - MainWindow.setWindowIcon(icon) - MainWindow.setTabShape(QtWidgets.QTabWidget.Triangular) - self.centralwidget = QtWidgets.QWidget(MainWindow) - self.centralwidget.setObjectName("centralwidget") - self.horizontalLayout = QtWidgets.QHBoxLayout(self.centralwidget) - self.horizontalLayout.setContentsMargins(0, 0, 0, 0) - self.horizontalLayout.setObjectName("horizontalLayout") - self.flight_tabs = MainWorkspace(self.centralwidget) - self.flight_tabs.setObjectName("flight_tabs") - self.horizontalLayout.addWidget(self.flight_tabs) - MainWindow.setCentralWidget(self.centralwidget) - self.menubar = QtWidgets.QMenuBar(MainWindow) - self.menubar.setGeometry(QtCore.QRect(0, 0, 1490, 21)) - self.menubar.setObjectName("menubar") - self.menuFile = QtWidgets.QMenu(self.menubar) - self.menuFile.setObjectName("menuFile") - self.menuHelp = QtWidgets.QMenu(self.menubar) - self.menuHelp.setObjectName("menuHelp") - self.menuView = QtWidgets.QMenu(self.menubar) - self.menuView.setObjectName("menuView") - self.menuProject = QtWidgets.QMenu(self.menubar) - self.menuProject.setObjectName("menuProject") - MainWindow.setMenuBar(self.menubar) - self.statusbar = QtWidgets.QStatusBar(MainWindow) - self.statusbar.setEnabled(True) - self.statusbar.setAutoFillBackground(True) - self.statusbar.setObjectName("statusbar") - MainWindow.setStatusBar(self.statusbar) - self.project_dock = QtWidgets.QDockWidget(MainWindow) - self.project_dock.setEnabled(True) - sizePolicy = QtWidgets.QSizePolicy(QtWidgets.QSizePolicy.MinimumExpanding, QtWidgets.QSizePolicy.Preferred) - sizePolicy.setHorizontalStretch(0) - sizePolicy.setVerticalStretch(0) - sizePolicy.setHeightForWidth(self.project_dock.sizePolicy().hasHeightForWidth()) - self.project_dock.setSizePolicy(sizePolicy) - self.project_dock.setMinimumSize(QtCore.QSize(198, 165)) - self.project_dock.setMaximumSize(QtCore.QSize(524287, 524287)) - self.project_dock.setAllowedAreas(QtCore.Qt.LeftDockWidgetArea|QtCore.Qt.RightDockWidgetArea) - self.project_dock.setObjectName("project_dock") - self.project_dock_contents = QtWidgets.QWidget() - sizePolicy = QtWidgets.QSizePolicy(QtWidgets.QSizePolicy.Preferred, QtWidgets.QSizePolicy.Preferred) - sizePolicy.setHorizontalStretch(0) - sizePolicy.setVerticalStretch(0) - sizePolicy.setHeightForWidth(self.project_dock_contents.sizePolicy().hasHeightForWidth()) - self.project_dock_contents.setSizePolicy(sizePolicy) - self.project_dock_contents.setObjectName("project_dock_contents") - self.verticalLayout_4 = QtWidgets.QVBoxLayout(self.project_dock_contents) - self.verticalLayout_4.setContentsMargins(0, 0, 0, 0) - self.verticalLayout_4.setSpacing(3) - self.verticalLayout_4.setObjectName("verticalLayout_4") - self.project_dock_grid = QtWidgets.QGridLayout() - self.project_dock_grid.setContentsMargins(5, -1, -1, -1) - self.project_dock_grid.setSpacing(3) - self.project_dock_grid.setObjectName("project_dock_grid") - self.label_prj_info = QtWidgets.QLabel(self.project_dock_contents) - self.label_prj_info.setObjectName("label_prj_info") - self.project_dock_grid.addWidget(self.label_prj_info, 0, 0, 1, 1) - self.prj_import_grav = QtWidgets.QPushButton(self.project_dock_contents) - icon1 = QtGui.QIcon() - icon1.addPixmap(QtGui.QPixmap(":/icons/gravity"), QtGui.QIcon.Normal, QtGui.QIcon.Off) - self.prj_import_grav.setIcon(icon1) - self.prj_import_grav.setIconSize(QtCore.QSize(16, 16)) - self.prj_import_grav.setObjectName("prj_import_grav") - self.project_dock_grid.addWidget(self.prj_import_grav, 4, 1, 1, 1) - self.prj_add_flight = QtWidgets.QPushButton(self.project_dock_contents) - icon2 = QtGui.QIcon() - icon2.addPixmap(QtGui.QPixmap(":/icons/airborne"), QtGui.QIcon.Normal, QtGui.QIcon.Off) - self.prj_add_flight.setIcon(icon2) - self.prj_add_flight.setObjectName("prj_add_flight") - self.project_dock_grid.addWidget(self.prj_add_flight, 2, 0, 1, 1) - self.prj_import_gps = QtWidgets.QPushButton(self.project_dock_contents) - icon3 = QtGui.QIcon() - icon3.addPixmap(QtGui.QPixmap(":/icons/gps"), QtGui.QIcon.Normal, QtGui.QIcon.Off) - self.prj_import_gps.setIcon(icon3) - self.prj_import_gps.setObjectName("prj_import_gps") - self.project_dock_grid.addWidget(self.prj_import_gps, 4, 0, 1, 1) - self.prj_add_meter = QtWidgets.QPushButton(self.project_dock_contents) - icon4 = QtGui.QIcon() - icon4.addPixmap(QtGui.QPixmap(":/icons/meter_config.png"), QtGui.QIcon.Normal, QtGui.QIcon.Off) - self.prj_add_meter.setIcon(icon4) - self.prj_add_meter.setObjectName("prj_add_meter") - self.project_dock_grid.addWidget(self.prj_add_meter, 2, 1, 1, 1) - self.project_tree = ProjectTreeView(self.project_dock_contents) - self.project_tree.setEditTriggers(QtWidgets.QAbstractItemView.NoEditTriggers) - self.project_tree.setObjectName("project_tree") - self.project_dock_grid.addWidget(self.project_tree, 1, 0, 1, 2) - self.verticalLayout_4.addLayout(self.project_dock_grid) - self.project_dock.setWidget(self.project_dock_contents) - MainWindow.addDockWidget(QtCore.Qt.DockWidgetArea(1), self.project_dock) - self.toolbar = QtWidgets.QToolBar(MainWindow) - self.toolbar.setFloatable(False) - self.toolbar.setObjectName("toolbar") - MainWindow.addToolBar(QtCore.Qt.TopToolBarArea, self.toolbar) - self.info_dock = QtWidgets.QDockWidget(MainWindow) - sizePolicy = QtWidgets.QSizePolicy(QtWidgets.QSizePolicy.Preferred, QtWidgets.QSizePolicy.Preferred) - sizePolicy.setHorizontalStretch(0) - sizePolicy.setVerticalStretch(0) - sizePolicy.setHeightForWidth(self.info_dock.sizePolicy().hasHeightForWidth()) - self.info_dock.setSizePolicy(sizePolicy) - self.info_dock.setMinimumSize(QtCore.QSize(242, 246)) - self.info_dock.setMaximumSize(QtCore.QSize(524287, 246)) - self.info_dock.setSizeIncrement(QtCore.QSize(0, 0)) - self.info_dock.setFloating(False) - self.info_dock.setFeatures(QtWidgets.QDockWidget.AllDockWidgetFeatures) - self.info_dock.setAllowedAreas(QtCore.Qt.BottomDockWidgetArea|QtCore.Qt.TopDockWidgetArea) - self.info_dock.setObjectName("info_dock") - self.console_dock_contents = QtWidgets.QWidget() - sizePolicy = QtWidgets.QSizePolicy(QtWidgets.QSizePolicy.Preferred, QtWidgets.QSizePolicy.Fixed) - sizePolicy.setHorizontalStretch(0) - sizePolicy.setVerticalStretch(0) - sizePolicy.setHeightForWidth(self.console_dock_contents.sizePolicy().hasHeightForWidth()) - self.console_dock_contents.setSizePolicy(sizePolicy) - self.console_dock_contents.setObjectName("console_dock_contents") - self.gridLayout = QtWidgets.QGridLayout(self.console_dock_contents) - self.gridLayout.setContentsMargins(5, 0, 5, 0) - self.gridLayout.setSpacing(0) - self.gridLayout.setObjectName("gridLayout") - self.console_frame = QtWidgets.QFrame(self.console_dock_contents) - sizePolicy = QtWidgets.QSizePolicy(QtWidgets.QSizePolicy.Expanding, QtWidgets.QSizePolicy.Preferred) - sizePolicy.setHorizontalStretch(2) - sizePolicy.setVerticalStretch(0) - sizePolicy.setHeightForWidth(self.console_frame.sizePolicy().hasHeightForWidth()) - self.console_frame.setSizePolicy(sizePolicy) - self.console_frame.setSizeIncrement(QtCore.QSize(2, 0)) - self.console_frame.setFrameShape(QtWidgets.QFrame.StyledPanel) - self.console_frame.setFrameShadow(QtWidgets.QFrame.Raised) - self.console_frame.setObjectName("console_frame") - self.verticalLayout_2 = QtWidgets.QVBoxLayout(self.console_frame) - self.verticalLayout_2.setContentsMargins(6, 0, 0, 0) - self.verticalLayout_2.setSpacing(5) - self.verticalLayout_2.setObjectName("verticalLayout_2") - self.text_console = QtWidgets.QTextEdit(self.console_frame) - sizePolicy = QtWidgets.QSizePolicy(QtWidgets.QSizePolicy.Expanding, QtWidgets.QSizePolicy.MinimumExpanding) - sizePolicy.setHorizontalStretch(0) - sizePolicy.setVerticalStretch(0) - sizePolicy.setHeightForWidth(self.text_console.sizePolicy().hasHeightForWidth()) - self.text_console.setSizePolicy(sizePolicy) - self.text_console.setMinimumSize(QtCore.QSize(0, 0)) - self.text_console.setMaximumSize(QtCore.QSize(16777215, 16777215)) - palette = QtGui.QPalette() - brush = QtGui.QBrush(QtGui.QColor(160, 160, 160)) - brush.setStyle(QtCore.Qt.SolidPattern) - palette.setBrush(QtGui.QPalette.Active, QtGui.QPalette.Base, brush) - brush = QtGui.QBrush(QtGui.QColor(160, 160, 160)) - brush.setStyle(QtCore.Qt.SolidPattern) - palette.setBrush(QtGui.QPalette.Inactive, QtGui.QPalette.Base, brush) - brush = QtGui.QBrush(QtGui.QColor(240, 240, 240)) - brush.setStyle(QtCore.Qt.SolidPattern) - palette.setBrush(QtGui.QPalette.Disabled, QtGui.QPalette.Base, brush) - self.text_console.setPalette(palette) - self.text_console.setAutoFillBackground(True) - self.text_console.setFrameShape(QtWidgets.QFrame.StyledPanel) - self.text_console.setReadOnly(True) - self.text_console.setObjectName("text_console") - self.verticalLayout_2.addWidget(self.text_console) - self.console_btns_layout = QtWidgets.QGridLayout() - self.console_btns_layout.setObjectName("console_btns_layout") - self.combo_console_verbosity = QtWidgets.QComboBox(self.console_frame) - self.combo_console_verbosity.setObjectName("combo_console_verbosity") - self.combo_console_verbosity.addItem("") - self.combo_console_verbosity.addItem("") - self.combo_console_verbosity.addItem("") - self.combo_console_verbosity.addItem("") - self.combo_console_verbosity.addItem("") - self.console_btns_layout.addWidget(self.combo_console_verbosity, 0, 2, 1, 1) - self.btn_clear_console = QtWidgets.QPushButton(self.console_frame) - self.btn_clear_console.setMaximumSize(QtCore.QSize(100, 16777215)) - self.btn_clear_console.setObjectName("btn_clear_console") - self.console_btns_layout.addWidget(self.btn_clear_console, 0, 0, 1, 1) - self.label_logging_level = QtWidgets.QLabel(self.console_frame) - self.label_logging_level.setObjectName("label_logging_level") - self.console_btns_layout.addWidget(self.label_logging_level, 0, 1, 1, 1) - self.verticalLayout_2.addLayout(self.console_btns_layout) - self.gridLayout.addWidget(self.console_frame, 0, 0, 1, 1) - self.info_dock.setWidget(self.console_dock_contents) - MainWindow.addDockWidget(QtCore.Qt.DockWidgetArea(8), self.info_dock) - self.actionDocumentation = QtWidgets.QAction(MainWindow) - self.actionDocumentation.setObjectName("actionDocumentation") - self.action_exit = QtWidgets.QAction(MainWindow) - self.action_exit.setObjectName("action_exit") - self.action_project_dock = QtWidgets.QAction(MainWindow) - self.action_project_dock.setCheckable(True) - self.action_project_dock.setChecked(True) - self.action_project_dock.setObjectName("action_project_dock") - self.action_tool_dock = QtWidgets.QAction(MainWindow) - self.action_tool_dock.setCheckable(True) - self.action_tool_dock.setChecked(False) - self.action_tool_dock.setObjectName("action_tool_dock") - self.action_file_new = QtWidgets.QAction(MainWindow) - icon5 = QtGui.QIcon() - icon5.addPixmap(QtGui.QPixmap(":/icons/new_file.png"), QtGui.QIcon.Normal, QtGui.QIcon.Off) - self.action_file_new.setIcon(icon5) - self.action_file_new.setObjectName("action_file_new") - self.action_file_open = QtWidgets.QAction(MainWindow) - icon6 = QtGui.QIcon() - icon6.addPixmap(QtGui.QPixmap(":/icons/folder_open.png"), QtGui.QIcon.Normal, QtGui.QIcon.Off) - self.action_file_open.setIcon(icon6) - self.action_file_open.setObjectName("action_file_open") - self.action_file_save = QtWidgets.QAction(MainWindow) - icon7 = QtGui.QIcon() - icon7.addPixmap(QtGui.QPixmap(":/icons/save_project.png"), QtGui.QIcon.Normal, QtGui.QIcon.Off) - self.action_file_save.setIcon(icon7) - self.action_file_save.setObjectName("action_file_save") - self.action_add_flight = QtWidgets.QAction(MainWindow) - self.action_add_flight.setIcon(icon2) - self.action_add_flight.setObjectName("action_add_flight") - self.action_add_meter = QtWidgets.QAction(MainWindow) - self.action_add_meter.setIcon(icon4) - self.action_add_meter.setObjectName("action_add_meter") - self.action_project_info = QtWidgets.QAction(MainWindow) - icon8 = QtGui.QIcon() - icon8.addPixmap(QtGui.QPixmap(":/icons/dgs"), QtGui.QIcon.Normal, QtGui.QIcon.Off) - self.action_project_info.setIcon(icon8) - self.action_project_info.setObjectName("action_project_info") - self.action_info_dock = QtWidgets.QAction(MainWindow) - self.action_info_dock.setCheckable(True) - self.action_info_dock.setChecked(True) - self.action_info_dock.setObjectName("action_info_dock") - self.action_import_gps = QtWidgets.QAction(MainWindow) - self.action_import_gps.setIcon(icon3) - self.action_import_gps.setObjectName("action_import_gps") - self.action_import_grav = QtWidgets.QAction(MainWindow) - self.action_import_grav.setIcon(icon1) - self.action_import_grav.setObjectName("action_import_grav") - self.menuFile.addAction(self.action_file_new) - self.menuFile.addAction(self.action_file_open) - self.menuFile.addAction(self.action_file_save) - self.menuFile.addSeparator() - self.menuFile.addAction(self.action_exit) - self.menuHelp.addAction(self.actionDocumentation) - self.menuView.addAction(self.action_project_dock) - self.menuView.addAction(self.action_tool_dock) - self.menuView.addAction(self.action_info_dock) - self.menuProject.addAction(self.action_import_grav) - self.menuProject.addAction(self.action_import_gps) - self.menuProject.addAction(self.action_add_flight) - self.menuProject.addAction(self.action_add_meter) - self.menuProject.addAction(self.action_project_info) - self.menubar.addAction(self.menuFile.menuAction()) - self.menubar.addAction(self.menuProject.menuAction()) - self.menubar.addAction(self.menuView.menuAction()) - self.menubar.addAction(self.menuHelp.menuAction()) - self.toolbar.addAction(self.action_file_new) - self.toolbar.addAction(self.action_file_open) - self.toolbar.addAction(self.action_file_save) - self.toolbar.addSeparator() - self.toolbar.addAction(self.action_add_flight) - self.toolbar.addAction(self.action_add_meter) - self.toolbar.addAction(self.action_import_gps) - self.toolbar.addAction(self.action_import_grav) - self.toolbar.addSeparator() - - self.retranslateUi(MainWindow) - self.action_project_dock.toggled['bool'].connect(self.project_dock.setVisible) - self.project_dock.visibilityChanged['bool'].connect(self.action_project_dock.setChecked) - self.action_info_dock.toggled['bool'].connect(self.info_dock.setVisible) - self.info_dock.visibilityChanged['bool'].connect(self.action_info_dock.setChecked) - self.btn_clear_console.clicked.connect(self.text_console.clear) - QtCore.QMetaObject.connectSlotsByName(MainWindow) - - def retranslateUi(self, MainWindow): - _translate = QtCore.QCoreApplication.translate - MainWindow.setWindowTitle(_translate("MainWindow", "Dynamic Gravity Processor")) - self.menuFile.setTitle(_translate("MainWindow", "File")) - self.menuHelp.setTitle(_translate("MainWindow", "Help")) - self.menuView.setTitle(_translate("MainWindow", "Panels")) - self.menuProject.setTitle(_translate("MainWindow", "Project")) - self.project_dock.setWindowTitle(_translate("MainWindow", "Project")) - self.label_prj_info.setText(_translate("MainWindow", "Project Tree:")) - self.prj_import_grav.setText(_translate("MainWindow", "Import Gravity")) - self.prj_add_flight.setText(_translate("MainWindow", "Add Flight")) - self.prj_import_gps.setText(_translate("MainWindow", "Import GPS")) - self.prj_add_meter.setText(_translate("MainWindow", "Add Meter")) - self.toolbar.setWindowTitle(_translate("MainWindow", "Toolbar")) - self.info_dock.setWindowTitle(_translate("MainWindow", "Console")) - self.combo_console_verbosity.setItemText(0, _translate("MainWindow", "Debug")) - self.combo_console_verbosity.setItemText(1, _translate("MainWindow", "Info")) - self.combo_console_verbosity.setItemText(2, _translate("MainWindow", "Warning")) - self.combo_console_verbosity.setItemText(3, _translate("MainWindow", "Error")) - self.combo_console_verbosity.setItemText(4, _translate("MainWindow", "Critical")) - self.btn_clear_console.setText(_translate("MainWindow", "Clear")) - self.label_logging_level.setText(_translate("MainWindow", "

Logging Level:

")) - self.actionDocumentation.setText(_translate("MainWindow", "Documentation")) - self.actionDocumentation.setShortcut(_translate("MainWindow", "F1")) - self.action_exit.setText(_translate("MainWindow", "Exit")) - self.action_exit.setShortcut(_translate("MainWindow", "Ctrl+Q")) - self.action_project_dock.setText(_translate("MainWindow", "Project")) - self.action_project_dock.setShortcut(_translate("MainWindow", "Alt+1")) - self.action_tool_dock.setText(_translate("MainWindow", "Tools")) - self.action_tool_dock.setShortcut(_translate("MainWindow", "Alt+2")) - self.action_file_new.setText(_translate("MainWindow", "New Project...")) - self.action_file_new.setShortcut(_translate("MainWindow", "Ctrl+Shift+N")) - self.action_file_open.setText(_translate("MainWindow", "Open Project")) - self.action_file_open.setShortcut(_translate("MainWindow", "Ctrl+Shift+O")) - self.action_file_save.setText(_translate("MainWindow", "Save Project")) - self.action_file_save.setShortcut(_translate("MainWindow", "Ctrl+S")) - self.action_add_flight.setText(_translate("MainWindow", "Add Flight")) - self.action_add_flight.setShortcut(_translate("MainWindow", "Ctrl+Shift+F")) - self.action_add_meter.setText(_translate("MainWindow", "Add Meter")) - self.action_add_meter.setShortcut(_translate("MainWindow", "Ctrl+Shift+M")) - self.action_project_info.setText(_translate("MainWindow", "Project Info...")) - self.action_project_info.setShortcut(_translate("MainWindow", "Ctrl+I")) - self.action_info_dock.setText(_translate("MainWindow", "Console")) - self.action_info_dock.setShortcut(_translate("MainWindow", "Alt+3")) - self.action_import_gps.setText(_translate("MainWindow", "Import GPS")) - self.action_import_grav.setText(_translate("MainWindow", "Import Gravity")) - -from dgp.core.views.ProjectTreeView import ProjectTreeView -from dgp.gui.workspace import MainWorkspace -from dgp import resources_rc diff --git a/dgp/gui/ui/project_dialog.py b/dgp/gui/ui/project_dialog.py deleted file mode 100644 index 4a7d80e..0000000 --- a/dgp/gui/ui/project_dialog.py +++ /dev/null @@ -1,194 +0,0 @@ -# -*- coding: utf-8 -*- - -# Form implementation generated from reading ui file 'dgp/gui/ui\project_dialog.ui' -# -# Created by: PyQt5 UI code generator 5.9 -# -# WARNING! All changes made in this file will be lost! - -from PyQt5 import QtCore, QtGui, QtWidgets - -class Ui_Dialog(object): - def setupUi(self, Dialog): - Dialog.setObjectName("Dialog") - Dialog.resize(900, 450) - sizePolicy = QtWidgets.QSizePolicy(QtWidgets.QSizePolicy.MinimumExpanding, QtWidgets.QSizePolicy.MinimumExpanding) - sizePolicy.setHorizontalStretch(0) - sizePolicy.setVerticalStretch(0) - sizePolicy.setHeightForWidth(Dialog.sizePolicy().hasHeightForWidth()) - Dialog.setSizePolicy(sizePolicy) - Dialog.setMinimumSize(QtCore.QSize(0, 0)) - Dialog.setMaximumSize(QtCore.QSize(16777215, 16777215)) - Dialog.setSizeIncrement(QtCore.QSize(50, 50)) - icon = QtGui.QIcon() - icon.addPixmap(QtGui.QPixmap(":/icons/dgs"), QtGui.QIcon.Normal, QtGui.QIcon.Off) - Dialog.setWindowIcon(icon) - Dialog.setAccessibleName("") - Dialog.setSizeGripEnabled(True) - Dialog.setModal(False) - self.horizontalLayout_4 = QtWidgets.QHBoxLayout(Dialog) - self.horizontalLayout_4.setContentsMargins(0, -1, -1, -1) - self.horizontalLayout_4.setObjectName("horizontalLayout_4") - self.prj_type_list = QtWidgets.QListWidget(Dialog) - sizePolicy = QtWidgets.QSizePolicy(QtWidgets.QSizePolicy.Maximum, QtWidgets.QSizePolicy.Minimum) - sizePolicy.setHorizontalStretch(0) - sizePolicy.setVerticalStretch(0) - sizePolicy.setHeightForWidth(self.prj_type_list.sizePolicy().hasHeightForWidth()) - self.prj_type_list.setSizePolicy(sizePolicy) - self.prj_type_list.setMinimumSize(QtCore.QSize(0, 0)) - self.prj_type_list.setMaximumSize(QtCore.QSize(16777215, 16777215)) - self.prj_type_list.setFrameShadow(QtWidgets.QFrame.Raised) - self.prj_type_list.setLineWidth(1) - self.prj_type_list.setIconSize(QtCore.QSize(20, 20)) - self.prj_type_list.setViewMode(QtWidgets.QListView.ListMode) - self.prj_type_list.setUniformItemSizes(True) - self.prj_type_list.setObjectName("prj_type_list") - self.horizontalLayout_4.addWidget(self.prj_type_list) - self.vbox_main = QtWidgets.QVBoxLayout() - self.vbox_main.setSpacing(3) - self.vbox_main.setObjectName("vbox_main") - self.formLayout = QtWidgets.QFormLayout() - self.formLayout.setSizeConstraint(QtWidgets.QLayout.SetNoConstraint) - self.formLayout.setFieldGrowthPolicy(QtWidgets.QFormLayout.ExpandingFieldsGrow) - self.formLayout.setLabelAlignment(QtCore.Qt.AlignLeading|QtCore.Qt.AlignLeft|QtCore.Qt.AlignVCenter) - self.formLayout.setFormAlignment(QtCore.Qt.AlignRight|QtCore.Qt.AlignTop|QtCore.Qt.AlignTrailing) - self.formLayout.setVerticalSpacing(3) - self.formLayout.setObjectName("formLayout") - self.label_name = QtWidgets.QLabel(Dialog) - sizePolicy = QtWidgets.QSizePolicy(QtWidgets.QSizePolicy.Preferred, QtWidgets.QSizePolicy.MinimumExpanding) - sizePolicy.setHorizontalStretch(0) - sizePolicy.setVerticalStretch(0) - sizePolicy.setHeightForWidth(self.label_name.sizePolicy().hasHeightForWidth()) - self.label_name.setSizePolicy(sizePolicy) - self.label_name.setMinimumSize(QtCore.QSize(0, 25)) - self.label_name.setObjectName("label_name") - self.formLayout.setWidget(0, QtWidgets.QFormLayout.LabelRole, self.label_name) - self.hbox_project_name = QtWidgets.QHBoxLayout() - self.hbox_project_name.setObjectName("hbox_project_name") - self.prj_name = QtWidgets.QLineEdit(Dialog) - sizePolicy = QtWidgets.QSizePolicy(QtWidgets.QSizePolicy.MinimumExpanding, QtWidgets.QSizePolicy.Minimum) - sizePolicy.setHorizontalStretch(0) - sizePolicy.setVerticalStretch(1) - sizePolicy.setHeightForWidth(self.prj_name.sizePolicy().hasHeightForWidth()) - self.prj_name.setSizePolicy(sizePolicy) - self.prj_name.setMinimumSize(QtCore.QSize(0, 25)) - font = QtGui.QFont() - font.setPointSize(8) - self.prj_name.setFont(font) - self.prj_name.setObjectName("prj_name") - self.hbox_project_name.addWidget(self.prj_name) - self.formLayout.setLayout(0, QtWidgets.QFormLayout.FieldRole, self.hbox_project_name) - self.label_dir = QtWidgets.QLabel(Dialog) - sizePolicy = QtWidgets.QSizePolicy(QtWidgets.QSizePolicy.Preferred, QtWidgets.QSizePolicy.MinimumExpanding) - sizePolicy.setHorizontalStretch(0) - sizePolicy.setVerticalStretch(0) - sizePolicy.setHeightForWidth(self.label_dir.sizePolicy().hasHeightForWidth()) - self.label_dir.setSizePolicy(sizePolicy) - self.label_dir.setMinimumSize(QtCore.QSize(0, 25)) - self.label_dir.setObjectName("label_dir") - self.formLayout.setWidget(1, QtWidgets.QFormLayout.LabelRole, self.label_dir) - self.hbox_form_directory = QtWidgets.QHBoxLayout() - self.hbox_form_directory.setContentsMargins(-1, 0, -1, 0) - self.hbox_form_directory.setSpacing(2) - self.hbox_form_directory.setObjectName("hbox_form_directory") - self.prj_dir = QtWidgets.QLineEdit(Dialog) - sizePolicy = QtWidgets.QSizePolicy(QtWidgets.QSizePolicy.MinimumExpanding, QtWidgets.QSizePolicy.Minimum) - sizePolicy.setHorizontalStretch(0) - sizePolicy.setVerticalStretch(1) - sizePolicy.setHeightForWidth(self.prj_dir.sizePolicy().hasHeightForWidth()) - self.prj_dir.setSizePolicy(sizePolicy) - self.prj_dir.setMinimumSize(QtCore.QSize(0, 25)) - font = QtGui.QFont() - font.setPointSize(8) - self.prj_dir.setFont(font) - self.prj_dir.setFrame(True) - self.prj_dir.setAlignment(QtCore.Qt.AlignLeading|QtCore.Qt.AlignLeft|QtCore.Qt.AlignVCenter) - self.prj_dir.setClearButtonEnabled(False) - self.prj_dir.setObjectName("prj_dir") - self.hbox_form_directory.addWidget(self.prj_dir) - self.prj_browse = QtWidgets.QToolButton(Dialog) - sizePolicy = QtWidgets.QSizePolicy(QtWidgets.QSizePolicy.Minimum, QtWidgets.QSizePolicy.Minimum) - sizePolicy.setHorizontalStretch(0) - sizePolicy.setVerticalStretch(0) - sizePolicy.setHeightForWidth(self.prj_browse.sizePolicy().hasHeightForWidth()) - self.prj_browse.setSizePolicy(sizePolicy) - self.prj_browse.setObjectName("prj_browse") - self.hbox_form_directory.addWidget(self.prj_browse) - self.formLayout.setLayout(1, QtWidgets.QFormLayout.FieldRole, self.hbox_form_directory) - self.label_required = QtWidgets.QLabel(Dialog) - font = QtGui.QFont() - font.setBold(True) - font.setWeight(75) - self.label_required.setFont(font) - self.label_required.setAlignment(QtCore.Qt.AlignRight|QtCore.Qt.AlignTrailing|QtCore.Qt.AlignVCenter) - self.label_required.setObjectName("label_required") - self.formLayout.setWidget(2, QtWidgets.QFormLayout.FieldRole, self.label_required) - self.horizontalLayout_2 = QtWidgets.QHBoxLayout() - self.horizontalLayout_2.setObjectName("horizontalLayout_2") - spacerItem = QtWidgets.QSpacerItem(40, 20, QtWidgets.QSizePolicy.Expanding, QtWidgets.QSizePolicy.Minimum) - self.horizontalLayout_2.addItem(spacerItem) - self.prj_properties = QtWidgets.QPushButton(Dialog) - self.prj_properties.setEnabled(False) - self.prj_properties.setObjectName("prj_properties") - self.horizontalLayout_2.addWidget(self.prj_properties) - self.formLayout.setLayout(3, QtWidgets.QFormLayout.FieldRole, self.horizontalLayout_2) - self.vbox_main.addLayout(self.formLayout) - self.label_msg = QtWidgets.QLabel(Dialog) - self.label_msg.setText("") - self.label_msg.setObjectName("label_msg") - self.vbox_main.addWidget(self.label_msg, 0, QtCore.Qt.AlignLeft) - self.vbox_advanced_controls = QtWidgets.QVBoxLayout() - self.vbox_advanced_controls.setObjectName("vbox_advanced_controls") - self.widget_advanced = QtWidgets.QWidget(Dialog) - self.widget_advanced.setEnabled(False) - self.widget_advanced.setObjectName("widget_advanced") - self.vbox_advanced_controls.addWidget(self.widget_advanced) - self.vbox_main.addLayout(self.vbox_advanced_controls) - self.hbox_dialog_buttons = QtWidgets.QHBoxLayout() - self.hbox_dialog_buttons.setObjectName("hbox_dialog_buttons") - spacerItem1 = QtWidgets.QSpacerItem(40, 20, QtWidgets.QSizePolicy.Expanding, QtWidgets.QSizePolicy.Minimum) - self.hbox_dialog_buttons.addItem(spacerItem1) - self.btn_cancel = QtWidgets.QPushButton(Dialog) - sizePolicy = QtWidgets.QSizePolicy(QtWidgets.QSizePolicy.Maximum, QtWidgets.QSizePolicy.Fixed) - sizePolicy.setHorizontalStretch(0) - sizePolicy.setVerticalStretch(0) - sizePolicy.setHeightForWidth(self.btn_cancel.sizePolicy().hasHeightForWidth()) - self.btn_cancel.setSizePolicy(sizePolicy) - self.btn_cancel.setMinimumSize(QtCore.QSize(0, 0)) - self.btn_cancel.setMaximumSize(QtCore.QSize(16777215, 16777215)) - self.btn_cancel.setObjectName("btn_cancel") - self.hbox_dialog_buttons.addWidget(self.btn_cancel) - self.btn_create = QtWidgets.QPushButton(Dialog) - sizePolicy = QtWidgets.QSizePolicy(QtWidgets.QSizePolicy.Maximum, QtWidgets.QSizePolicy.Fixed) - sizePolicy.setHorizontalStretch(0) - sizePolicy.setVerticalStretch(0) - sizePolicy.setHeightForWidth(self.btn_create.sizePolicy().hasHeightForWidth()) - self.btn_create.setSizePolicy(sizePolicy) - self.btn_create.setMinimumSize(QtCore.QSize(0, 0)) - self.btn_create.setMaximumSize(QtCore.QSize(16777215, 16777215)) - self.btn_create.setObjectName("btn_create") - self.hbox_dialog_buttons.addWidget(self.btn_create) - self.vbox_main.addLayout(self.hbox_dialog_buttons) - self.horizontalLayout_4.addLayout(self.vbox_main) - self.label_name.setBuddy(self.prj_name) - self.label_dir.setBuddy(self.prj_dir) - - self.retranslateUi(Dialog) - self.btn_cancel.clicked.connect(Dialog.reject) - self.prj_properties.clicked.connect(self.widget_advanced.show) - self.btn_create.clicked.connect(Dialog.accept) - QtCore.QMetaObject.connectSlotsByName(Dialog) - Dialog.setTabOrder(self.btn_create, self.prj_type_list) - - def retranslateUi(self, Dialog): - _translate = QtCore.QCoreApplication.translate - Dialog.setWindowTitle(_translate("Dialog", "Create New Project")) - self.label_name.setText(_translate("Dialog", "Project Name:*")) - self.label_dir.setText(_translate("Dialog", "Project Directory:*")) - self.prj_browse.setText(_translate("Dialog", "...")) - self.label_required.setText(_translate("Dialog", " required fields*")) - self.prj_properties.setText(_translate("Dialog", "Properties")) - self.btn_cancel.setText(_translate("Dialog", "Cancel")) - self.btn_create.setText(_translate("Dialog", "Create")) - -from dgp import resources_rc diff --git a/dgp/gui/ui/splash_screen.py b/dgp/gui/ui/splash_screen.py deleted file mode 100644 index ddee8aa..0000000 --- a/dgp/gui/ui/splash_screen.py +++ /dev/null @@ -1,126 +0,0 @@ -# -*- coding: utf-8 -*- - -# Form implementation generated from reading ui file 'dgp/gui/ui\splash_screen.ui' -# -# Created by: PyQt5 UI code generator 5.9 -# -# WARNING! All changes made in this file will be lost! - -from PyQt5 import QtCore, QtGui, QtWidgets - -class Ui_Launcher(object): - def setupUi(self, Launcher): - Launcher.setObjectName("Launcher") - Launcher.resize(604, 620) - sizePolicy = QtWidgets.QSizePolicy(QtWidgets.QSizePolicy.MinimumExpanding, QtWidgets.QSizePolicy.MinimumExpanding) - sizePolicy.setHorizontalStretch(0) - sizePolicy.setVerticalStretch(0) - sizePolicy.setHeightForWidth(Launcher.sizePolicy().hasHeightForWidth()) - Launcher.setSizePolicy(sizePolicy) - icon = QtGui.QIcon() - icon.addPixmap(QtGui.QPixmap(":/images/geoid"), QtGui.QIcon.Normal, QtGui.QIcon.Off) - Launcher.setWindowIcon(icon) - self.verticalLayout = QtWidgets.QVBoxLayout(Launcher) - self.verticalLayout.setObjectName("verticalLayout") - self.label_title = QtWidgets.QLabel(Launcher) - self.label_title.setObjectName("label_title") - self.verticalLayout.addWidget(self.label_title) - self.label_globeico = QtWidgets.QLabel(Launcher) - self.label_globeico.setFrameShape(QtWidgets.QFrame.NoFrame) - self.label_globeico.setText("") - self.label_globeico.setPixmap(QtGui.QPixmap(":/images/geoid")) - self.label_globeico.setScaledContents(True) - self.label_globeico.setAlignment(QtCore.Qt.AlignCenter) - self.label_globeico.setObjectName("label_globeico") - self.verticalLayout.addWidget(self.label_globeico, 0, QtCore.Qt.AlignHCenter|QtCore.Qt.AlignVCenter) - self.label_license = QtWidgets.QLabel(Launcher) - self.label_license.setObjectName("label_license") - self.verticalLayout.addWidget(self.label_license) - self.group_recent = QtWidgets.QGroupBox(Launcher) - self.group_recent.setTitle("") - self.group_recent.setFlat(True) - self.group_recent.setCheckable(False) - self.group_recent.setObjectName("group_recent") - self.horizontalLayout_2 = QtWidgets.QHBoxLayout(self.group_recent) - self.horizontalLayout_2.setContentsMargins(0, -1, 0, 0) - self.horizontalLayout_2.setObjectName("horizontalLayout_2") - self.label_recent = QtWidgets.QLabel(self.group_recent) - sizePolicy = QtWidgets.QSizePolicy(QtWidgets.QSizePolicy.Preferred, QtWidgets.QSizePolicy.Preferred) - sizePolicy.setHorizontalStretch(2) - sizePolicy.setVerticalStretch(0) - sizePolicy.setHeightForWidth(self.label_recent.sizePolicy().hasHeightForWidth()) - self.label_recent.setSizePolicy(sizePolicy) - self.label_recent.setObjectName("label_recent") - self.horizontalLayout_2.addWidget(self.label_recent) - self.btn_clear_recent = QtWidgets.QPushButton(self.group_recent) - self.btn_clear_recent.setBaseSize(QtCore.QSize(100, 0)) - self.btn_clear_recent.setObjectName("btn_clear_recent") - self.horizontalLayout_2.addWidget(self.btn_clear_recent) - self.verticalLayout.addWidget(self.group_recent) - self.list_projects = QtWidgets.QListWidget(Launcher) - sizePolicy = QtWidgets.QSizePolicy(QtWidgets.QSizePolicy.Expanding, QtWidgets.QSizePolicy.MinimumExpanding) - sizePolicy.setHorizontalStretch(0) - sizePolicy.setVerticalStretch(0) - sizePolicy.setHeightForWidth(self.list_projects.sizePolicy().hasHeightForWidth()) - self.list_projects.setSizePolicy(sizePolicy) - self.list_projects.setObjectName("list_projects") - self.verticalLayout.addWidget(self.list_projects) - self.group_btns = QtWidgets.QGroupBox(Launcher) - self.group_btns.setTitle("") - self.group_btns.setAlignment(QtCore.Qt.AlignCenter) - self.group_btns.setFlat(True) - self.group_btns.setObjectName("group_btns") - self.horizontalLayout = QtWidgets.QHBoxLayout(self.group_btns) - self.horizontalLayout.setContentsMargins(0, -1, 0, -1) - self.horizontalLayout.setSpacing(3) - self.horizontalLayout.setObjectName("horizontalLayout") - self.btn_newproject = QtWidgets.QPushButton(self.group_btns) - self.btn_newproject.setObjectName("btn_newproject") - self.horizontalLayout.addWidget(self.btn_newproject) - self.btn_browse = QtWidgets.QPushButton(self.group_btns) - self.btn_browse.setInputMethodHints(QtCore.Qt.ImhNone) - self.btn_browse.setObjectName("btn_browse") - self.horizontalLayout.addWidget(self.btn_browse) - spacerItem = QtWidgets.QSpacerItem(40, 20, QtWidgets.QSizePolicy.Expanding, QtWidgets.QSizePolicy.Minimum) - self.horizontalLayout.addItem(spacerItem) - self.label_error = QtWidgets.QLabel(self.group_btns) - self.label_error.setMinimumSize(QtCore.QSize(40, 0)) - self.label_error.setStyleSheet("color: rgb(255, 0, 0)") - self.label_error.setText("") - self.label_error.setObjectName("label_error") - self.horizontalLayout.addWidget(self.label_error) - spacerItem1 = QtWidgets.QSpacerItem(40, 20, QtWidgets.QSizePolicy.Expanding, QtWidgets.QSizePolicy.Minimum) - self.horizontalLayout.addItem(spacerItem1) - self.dialog_buttons = QtWidgets.QDialogButtonBox(self.group_btns) - sizePolicy = QtWidgets.QSizePolicy(QtWidgets.QSizePolicy.Minimum, QtWidgets.QSizePolicy.Fixed) - sizePolicy.setHorizontalStretch(0) - sizePolicy.setVerticalStretch(0) - sizePolicy.setHeightForWidth(self.dialog_buttons.sizePolicy().hasHeightForWidth()) - self.dialog_buttons.setSizePolicy(sizePolicy) - self.dialog_buttons.setInputMethodHints(QtCore.Qt.ImhPreferUppercase) - self.dialog_buttons.setStandardButtons(QtWidgets.QDialogButtonBox.Cancel|QtWidgets.QDialogButtonBox.Ok) - self.dialog_buttons.setObjectName("dialog_buttons") - self.horizontalLayout.addWidget(self.dialog_buttons) - self.verticalLayout.addWidget(self.group_btns) - self.actionbrowse = QtWidgets.QAction(Launcher) - self.actionbrowse.setObjectName("actionbrowse") - - self.retranslateUi(Launcher) - self.dialog_buttons.rejected.connect(Launcher.reject) - self.dialog_buttons.accepted.connect(Launcher.accept) - QtCore.QMetaObject.connectSlotsByName(Launcher) - - def retranslateUi(self, Launcher): - _translate = QtCore.QCoreApplication.translate - Launcher.setWindowTitle(_translate("Launcher", "Dynamic Gravity Processor")) - self.label_title.setText(_translate("Launcher", "

Dynamic Gravity Processor

")) - self.label_license.setText(_translate("Launcher", "

Version 0.1

Licensed under the Apache-2.0 License

")) - self.label_recent.setText(_translate("Launcher", "Open Recent Project:")) - self.btn_clear_recent.setText(_translate("Launcher", "Clear Recent")) - self.btn_newproject.setText(_translate("Launcher", "&New Project")) - self.btn_browse.setWhatsThis(_translate("Launcher", "Browse for a project")) - self.btn_browse.setText(_translate("Launcher", "&Browse...")) - self.actionbrowse.setText(_translate("Launcher", "browse")) - self.actionbrowse.setShortcut(_translate("Launcher", "Ctrl+O")) - -from dgp import resources_rc diff --git a/dgp/lib/types.py b/dgp/lib/types.py index 179ac29..c8c350d 100644 --- a/dgp/lib/types.py +++ b/dgp/lib/types.py @@ -1,4 +1,4 @@ -# coding: utf-8 +# -*- coding: utf-8 -*- import logging from abc import ABCMeta, abstractmethod @@ -6,13 +6,10 @@ from typing import Union, Generator, List, Iterable from pandas import Series, DataFrame +from PyQt5.QtCore import Qt from dgp.lib.etc import gen_uuid -from dgp.gui.qtenum import QtItemFlags, QtDataRoles -from .datastore import get_datastore -# import dgp.lib.datamanager as dm -from . import enums -# import dgp.lib.enums as enums +from core.types import enumerations """ Dynamic Gravity Processor (DGP) :: lib/types.py @@ -150,7 +147,7 @@ def children(self) -> Generator[AbstractTreeItem, None, None]: for child in self._children: yield child - def data(self, role: QtDataRoles): + def data(self, role): raise NotImplementedError("data(role) must be implemented in subclass.") def child(self, index: int) -> AbstractTreeItem: @@ -243,7 +240,7 @@ def row(self) -> Union[int, None]: def flags(self) -> int: """Returns default flags for Tree Items, override this to enable custom behavior in the model.""" - return QtItemFlags.ItemIsSelectable | QtItemFlags.ItemIsEnabled + return Qt.ItemIsSelectable | Qt.ItemIsEnabled def update(self, **kwargs): """Propogate update up to the parent that decides to catch it""" @@ -251,10 +248,10 @@ def update(self, **kwargs): self.parent.update(**kwargs) -_style_roles = {QtDataRoles.BackgroundRole: 'bg', - QtDataRoles.ForegroundRole: 'fg', - QtDataRoles.DecorationRole: 'icon', - QtDataRoles.FontRole: 'font'} +_style_roles = {Qt.BackgroundRole: 'bg', + Qt.ForegroundRole: 'fg', + Qt.DecorationRole: 'icon', + Qt.FontRole: 'font'} class TreeItem(BaseTreeItem): @@ -298,7 +295,7 @@ def style(self): def style(self, value): self._style = value - def data(self, role: QtDataRoles): + def data(self, role): """ Return contextual data based on supplied role. If a role is not defined or handled by descendents they should return @@ -307,15 +304,15 @@ def data(self, role: QtDataRoles): handle common style parameters. Descendant classes should provide their own definition to override specific roles, and then call the base data() implementation to handle style application. e.g. - >>> def data(self, role: QtDataRoles): - >>> if role == QtDataRoles.DisplayRole: + >>> def data(self, role): + >>> if role == Qt.DisplayRole: >>> return "Custom Display: " + self.name >>> # Allow base class to apply styles if role not caught above >>> return super().data(role) """ - if role == QtDataRoles.DisplayRole: + if role == Qt.DisplayRole: return str(self) - if role == QtDataRoles.ToolTipRole: + if role == Qt.ToolTipRole: return self.uid # Allow style specification by QtDataRole or by name e.g. 'bg', 'fg' if role in self._style: @@ -349,8 +346,8 @@ def droppable(self): return False return True - def data(self, role: QtDataRoles): - if role == QtDataRoles.DisplayRole: + def data(self, role): + if role == Qt.DisplayRole: return self.label return None @@ -419,13 +416,13 @@ def update_line(self, start=None, stop=None, label=None): self.update() def data(self, role): - if role == QtDataRoles.DisplayRole: + if role == Qt.DisplayRole: if self.label: return "Line {lbl} {start} :: {end}".format(lbl=self.label, start=self.start, end=self.stop) return str(self) - if role == QtDataRoles.ToolTipRole: + if role == Qt.ToolTipRole: return "Line UID: " + self.uid return super().data(role) @@ -442,126 +439,8 @@ def __str__(self): name=name, start=self.start, stop=self.stop) -class DataSource(BaseTreeItem): - """ - The DataSource object is designed to hold a reference to a given UID/File - that has been imported and stored by the Data Manager. - This object provides a method load() that enables the caller to retrieve - the data pointed to by this object from the Data Manager. - - As DataSource is derived from BaseTreeItem, it supports being displayed - in a QTreeView via an AbstractItemModel derived class. - - Attributes - ---------- - filename : str - Record of the canonical path of the original data file. - fields : list(str) - List containing names of the fields (columns) available from the - source data. - dtype : str - Data type (i.e. GPS/Gravity) of the data pointed to by this object. - - """ - def __init__(self, uid, filename: str, fields: List[str], - dtype: enums.DataTypes, x0=None, x1=None): - super().__init__(uid) - self.filename = filename - self.fields = fields - self.dtype = dtype - self._flight = None - self._active = False - - self._x0 = x0 or 1 - self._x1 = x1 or 2 - - def delete(self): - if self.flight: - try: - self.flight.remove_data(self) - except AttributeError: - _log.error("Error removing data source from flight") - - @property - def flight(self): - return self._flight - - @flight.setter - def flight(self, value): - self._flight = value - - @property - def active(self): - return self._active - - @active.setter - def active(self, value: bool): - """Iterate through siblings and deactivate any other sibling of same - dtype if setting this sibling to active.""" - if value: - for child in self.parent.children: # type: DataSource - if child is self: - continue - if child.dtype == self.dtype and child.active: - child.active = False - self._active = True - else: - self._active = False - - def get_xlim(self): - return self._x0, self._x1 - - def get_channels(self) -> List['DataChannel']: - """ - Create a new list of DataChannels. - - Notes - ----- - The reason we construct a new list of new DataChannels instances is - due the probability of the DataChannels being used in multiple - models. - - If we returned instead a reference to previously created instances, - we would unpredictable behavior when their state or parent is modified. - - Returns - ------- - channels : List[DataChannel] - List of DataChannels constructed from fields available to this - DataSource. - - """ - return [DataChannel(field, self) for field in self.fields] - - def load(self, field=None) -> Union[Series, DataFrame]: - """Load data from the DataManager and return the specified field.""" - try: - data = get_datastore().load_data(self._flight.uid, self.dtype.value, self.uid) - except KeyError: - _log.exception("Unable to load data.") - return None - if field is not None: - return data[field] - return data - - def data(self, role: QtDataRoles): - if role == QtDataRoles.DisplayRole: - return "{dtype}: {fname}".format(dtype=self.dtype.name.capitalize(), - fname=self.filename) - if role == QtDataRoles.ToolTipRole: - return "UID: {}".format(self.uid) - if role == QtDataRoles.DecorationRole: - if self.dtype == enums.DataTypes.GRAVITY: - return ':icons/gravity' - if self.dtype == enums.DataTypes.TRAJECTORY: - return ':icons/gps' - - def children(self): - return [] - - class DataChannel(BaseTreeItem): - def __init__(self, label, source: DataSource, parent=None): + def __init__(self, label, source, parent=None): super().__init__(gen_uuid('dcn'), parent=parent) self.label = label self.field = label @@ -582,18 +461,18 @@ def series(self, force=False) -> Series: def get_xlim(self): return self.source.get_xlim() - def data(self, role: QtDataRoles): - if role == QtDataRoles.DisplayRole: + def data(self, role): + if role == Qt.DisplayRole: return self.label - if role == QtDataRoles.UserRole: + if role == Qt.UserRole: return self.field - if role == QtDataRoles.ToolTipRole: + if role == Qt.ToolTipRole: return self.source.filename return None def flags(self): - return super().flags() | QtItemFlags.ItemIsDragEnabled | \ - QtItemFlags.ItemIsDropEnabled + return super().flags() | Qt.ItemIsDragEnabled | \ + Qt.ItemIsDropEnabled def orphan(self): """Remove the current object from its parents' list of children.""" diff --git a/examples/treemodel_integration_test.py b/examples/treemodel_integration_test.py index ad3ec1e..a420e31 100644 --- a/examples/treemodel_integration_test.py +++ b/examples/treemodel_integration_test.py @@ -46,8 +46,10 @@ def __init__(self, model): def _flight_changed(self, flight: FlightController): print("Setting fl model") - self._cmodel = flight.get_flight_line_model() + self._cmodel = flight.lines_model print(self._cmodel) + print(self._cmodel.rowCount()) + print(self._cmodel.item(0)) self.cb_flight_lines.setModel(self._cmodel) diff --git a/tests/test_dialogs.py b/tests/test_dialogs.py index 2ad84b1..0ce48bc 100644 --- a/tests/test_dialogs.py +++ b/tests/test_dialogs.py @@ -1,7 +1,5 @@ # coding: utf-8 -from .context import dgp, APP - import pathlib import tempfile import unittest @@ -13,7 +11,7 @@ import dgp.gui.dialogs as dlg import dgp.lib.project as prj -import dgp.lib.enums as enums +import core.types.enumerations as enums class TestDialogs(unittest.TestCase): diff --git a/tests/test_loader.py b/tests/test_loader.py index 206d82e..10e941f 100644 --- a/tests/test_loader.py +++ b/tests/test_loader.py @@ -1,20 +1,16 @@ # coding: utf-8 -from .context import dgp - import logging import unittest from pathlib import Path import PyQt5.QtWidgets as QtWidgets -import PyQt5.QtTest as QtTest from pandas import DataFrame import dgp.gui.loader as loader -import dgp.lib.enums as enums +import core.types.enumerations as enums import dgp.lib.gravity_ingestor as gi import dgp.lib.trajectory_ingestor as ti -import dgp.lib.types as types class TestLoader(unittest.TestCase): diff --git a/tests/test_project_controllers.py b/tests/test_project_controllers.py index 40a96af..7a9f85d 100644 --- a/tests/test_project_controllers.py +++ b/tests/test_project_controllers.py @@ -1 +1,83 @@ # -*- coding: utf-8 -*- +from datetime import datetime +from pathlib import Path + +import pytest +from PyQt5.QtCore import Qt, QAbstractItemModel + +from .context import APP +from dgp.core.controllers.datafile_controller import DataFileController +from dgp.core.models.data import DataFile +from dgp.core.controllers.flight_controller import FlightController +from dgp.core.models.flight import Flight, FlightLine + + +@pytest.fixture +def flight_ctrl(): + pass + + +def test_flightline_controller(): + pass + + +def test_datafile_controller(): + flight = Flight('test_flightline_controller') + fl_controller = FlightController(flight) + datafile = DataFile('test_flightline', 'gravity', datetime(2018, 6, 15), + source_path=Path('c:\\data\\gravity.dat')) + fl_controller.add_child(datafile) + + assert datafile in flight.data_files + + assert isinstance(fl_controller._data_files.child(0), DataFileController) + + + +def test_gravimeter_controller(): + pass + + +def test_flight_controller(): + flight = Flight('Test-Flt-1') + fc = FlightController(flight) + + assert flight.uid == fc.uid + assert flight.name == fc.data(Qt.DisplayRole) + + line1 = FlightLine(0, 125, 1) + line2 = FlightLine(126, 200, 2) + line3 = FlightLine(201, 356, 3) + + data1 = DataFile(flight.uid.base_uuid, 'gravity', datetime(2018, 5, 15)) + data2 = DataFile(flight.uid.base_uuid, 'gravity', datetime(2018, 5, 25)) + + assert fc.add_child(line1) + assert fc.add_child(line2) + assert fc.add_child(data1) + assert fc.add_child(data2) + + assert line1 in flight.flight_lines + assert line2 in flight.flight_lines + + assert data1 in flight.data_files + assert data2 in flight.data_files + + model = fc.lines_model + assert isinstance(model, QAbstractItemModel) + assert 2 == model.rowCount() + + lines = [line1, line2] + for i in range(model.rowCount()): + index = model.index(i, 0) + child = model.data(index, Qt.UserRole) + assert lines[i] == child + + with pytest.raises(ValueError): + fc.add_child({1: "invalid child"}) + + fc.add_child(line3) + + +def test_airborne_project_controller(): + pass diff --git a/tests/test_treemodel.py b/tests/test_treemodel.py deleted file mode 100644 index ccf68ef..0000000 --- a/tests/test_treemodel.py +++ /dev/null @@ -1,110 +0,0 @@ -# coding: utf-8 - -# from .context import dgp - -import unittest - -from dgp.lib import types, project -from dgp.gui.qtenum import QtDataRoles -from dgp.gui import models - - -class TestModels(unittest.TestCase): - def setUp(self): - self.uid = "uid123" - self.ti = types.TreeItem(self.uid) - self.uid_ch0 = "uidchild0" - self.uid_ch1 = "uidchild1" - self.child0 = types.TreeItem(self.uid_ch0) - self.child1 = types.TreeItem(self.uid_ch1) - - def test_treeitem(self): - """Test new tree item base class""" - self.assertIsInstance(self.ti, types.AbstractTreeItem) - self.assertEqual(self.ti.uid, self.uid) - - self.assertEqual(self.ti.child_count(), 0) - self.assertEqual(self.ti.row(), 0) - - def test_tree_child(self): - uid = "uid123" - child_uid = "uid345" - ti = types.TreeItem(uid) - child = types.TreeItem(child_uid) - ti.append_child(child) - ti.append_child(child) - # Appending the same item twice should have no effect - self.assertEqual(ti.child_count(), 1) - - # self.assertEqual(ti.child(child_uid), child) - self.assertEqual(child.parent, ti) - - with self.assertRaises(AssertionError): - ti.append_child("Bad Child") - - with self.assertRaises(AssertionError): - child.parent = "Not a valid parent" - - self.assertEqual(ti.indexof(child), 0) - child1 = types.TreeItem("uid456", parent=ti) - self.assertEqual(child1.parent, ti) - self.assertEqual(child1, ti.get_child("uid456")) - self.assertEqual(child1.row(), 1) - - def test_tree_iter(self): - """Test iteration of objects in TreeItem""" - self.ti.append_child(self.child0) - self.ti.append_child(self.child1) - - child_list = [self.child0, self.child1] - self.assertEqual(self.ti.child_count(), 2) - for child in self.ti: - self.assertIn(child, child_list) - self.assertIsInstance(child, types.AbstractTreeItem) - - def test_tree_len(self): - """Test __len__ method of TreeItem""" - self.assertEqual(len(self.ti), 0) - self.ti.append_child(self.child0) - self.ti.append_child(self.child1) - self.assertEqual(len(self.ti), 2) - - def test_tree_getitem(self): - """Test getitem [] usage with int index and string uid""" - self.ti.append_child(self.child0) - self.ti.append_child(self.child1) - - self.assertEqual(self.ti[0], self.child0) - self.assertEqual(self.ti[1], self.child1) - with self.assertRaises(ValueError): - invl_key = self.ti[('a tuple',)] - - with self.assertRaises(IndexError): - invl_idx = self.ti[5] - - self.assertEqual(self.ti[self.uid_ch0], self.child0) - - with self.assertRaises(KeyError): - invl_uid = self.ti["notarealuid"] - - def test_remove_child(self): - self.ti.append_child(self.child0) - self.assertEqual(len(self.ti), 1) - - self.ti.remove_child(self.child0) - self.assertEqual(len(self.ti), 0) - with self.assertRaises(KeyError): - ch0 = self.ti[self.uid_ch0] - - self.ti.append_child(self.child0) - self.ti.append_child(self.child1) - self.assertEqual(len(self.ti), 2) - self.ti.remove_child(self.child0) - self.assertEqual(len(self.ti), 1) - - def test_tree_contains(self): - """Test tree handling of 'x in tree' expressions.""" - self.ti.append_child(self.child1) - self.assertTrue(self.child1 in self.ti) - self.assertTrue(self.child0 not in self.ti) - From 6e7c609f2e2aa0267cb7084dfe1d8a6c3dc233b3 Mon Sep 17 00:00:00 2001 From: Zachery Brady Date: Thu, 28 Jun 2018 10:35:00 -0600 Subject: [PATCH 117/236] Add improved import dialogs for Flight/Gravimeter/Data Also deleted deprecated code from dialogs.py, new dialogs will be created in their own modules in dgp/gui/dialog --- dgp/gui/dialog/__init__.py | 0 dgp/gui/dialog/add_flight_dialog.py | 63 +++ dgp/gui/dialog/add_gravimeter_dialog.py | 63 +++ dgp/gui/dialog/data_import_dialog.py | 149 +++++++ dgp/gui/dialogs.py | 80 +--- dgp/gui/ui/add_flight_dialog.ui | 182 ++------ dgp/gui/ui/add_meter_dialog.ui | 165 ++++++++ dgp/gui/ui/data_import_dialog.ui | 537 +++++++++++++++++++----- 8 files changed, 913 insertions(+), 326 deletions(-) create mode 100644 dgp/gui/dialog/__init__.py create mode 100644 dgp/gui/dialog/add_flight_dialog.py create mode 100644 dgp/gui/dialog/add_gravimeter_dialog.py create mode 100644 dgp/gui/dialog/data_import_dialog.py create mode 100644 dgp/gui/ui/add_meter_dialog.ui diff --git a/dgp/gui/dialog/__init__.py b/dgp/gui/dialog/__init__.py new file mode 100644 index 0000000..e69de29 diff --git a/dgp/gui/dialog/add_flight_dialog.py b/dgp/gui/dialog/add_flight_dialog.py new file mode 100644 index 0000000..825444a --- /dev/null +++ b/dgp/gui/dialog/add_flight_dialog.py @@ -0,0 +1,63 @@ +# -*- coding: utf-8 -*- +from datetime import datetime +from typing import Optional + +from PyQt5.QtCore import Qt, QDate +from PyQt5.QtWidgets import QDialog, QWidget + +from dgp.core.controllers.controller_interfaces import IAirborneController, IFlightController +from dgp.core.models.flight import Flight +from ..ui.add_flight_dialog import Ui_NewFlight + + +class AddFlightDialog(QDialog, Ui_NewFlight): + def __init__(self, project: IAirborneController, flight: IFlightController = None, + parent: Optional[QWidget] = None): + super().__init__(parent) + self.setupUi(self) + self._project = project + + self.cb_gravimeters.setModel(project.meter_model) + self.qde_flight_date.setDate(datetime.today()) + + self._flight = flight + + def accept(self): + name = self.qle_flight_name.text() + qdate: QDate = self.qde_flight_date.date() + date = datetime(qdate.year(), qdate.month(), qdate.day()) + notes = self.qte_notes.toPlainText() + sequence = self.qsb_sequence.value() + duration = self.qsb_duration.value() + + meter = self.cb_gravimeters.currentData(role=Qt.UserRole) + # TODO: Add meter association to flight + # how to make a reference that can be retrieved after loading from JSON? + + if self._flight is not None: + # Existing flight - update + self._flight.set_attr('name', name) + self._flight.set_attr('date', date) + self._flight.set_attr('notes', notes) + self._flight.set_attr('sequence', sequence) + self._flight.set_attr('duration', duration) + else: + flt = Flight(self.qle_flight_name.text(), date=date, notes=self.qte_notes.toPlainText(), + sequence=sequence, duration=duration) + self._project.add_child(flt) + + super().accept() + + @classmethod + def from_existing(cls, flight: IFlightController, project: IAirborneController, + parent: Optional[QWidget] = None): + dialog = cls(project, flight, parent=parent) + dialog.setWindowTitle("Properties: " + flight.name) + dialog.qle_flight_name.setText(flight.name) + dialog.qte_notes.setText(flight.notes) + dialog.qsb_duration.setValue(flight.duration) + dialog.qsb_sequence.setValue(flight.sequence) + if flight.date is not None: + dialog.qde_flight_date.setDate(flight.date) + + return dialog diff --git a/dgp/gui/dialog/add_gravimeter_dialog.py b/dgp/gui/dialog/add_gravimeter_dialog.py new file mode 100644 index 0000000..b189cdb --- /dev/null +++ b/dgp/gui/dialog/add_gravimeter_dialog.py @@ -0,0 +1,63 @@ +# -*- coding: utf-8 -*- +import os +from pprint import pprint +from typing import Optional + +from PyQt5.QtCore import Qt +from PyQt5.QtGui import QIntValidator, QIcon +from PyQt5.QtWidgets import QDialog, QWidget, QFileDialog, QListWidgetItem + +from dgp.core.controllers.controller_interfaces import IAirborneController +from dgp.core.models.meter import Gravimeter +from dgp.gui.ui.add_meter_dialog import Ui_AddMeterDialog + + +class AddGravimeterDialog(QDialog, Ui_AddMeterDialog): + def __init__(self, project: IAirborneController, parent: Optional[QWidget] = None): + super().__init__(parent) + self.setupUi(self) + self._project = project + + AT1A = QListWidgetItem(QIcon(":/icons/dgs"), "AT1A") + AT1M = QListWidgetItem(QIcon(":/icons/dgs"), "AT1M") + + self.qlw_metertype.addItem(AT1A) + self.qlw_metertype.addItem(AT1M) + self.qlw_metertype.addItem("TAGS") + self.qlw_metertype.addItem("ZLS") + self.qlw_metertype.addItem("AirSeaII") + self.qlw_metertype.setCurrentRow(0) + self.qlw_metertype.currentRowChanged.connect(self._type_changed) + + self.qtb_browse_config.clicked.connect(self._browse_config) + self.qle_serial.textChanged.connect(lambda text: self._serial_changed(text)) + self.qle_serial.setValidator(QIntValidator(1, 1000)) + # self.qle_config_path.textChanged.connect(lambda text: self._text_changed(text)) + + def get_sensor_type(self) -> str: + item = self.qlw_metertype.currentItem() + if item is not None: + return item.text() + + def _browse_config(self): + # TODO: Look into useing getOpenURL methods for files on remote/network drives + path, _ = QFileDialog.getOpenFileName(self, "Select Configuration File", os.getcwd(), + "Configuration (*.ini);;Any (*.*)") + if path: + self.qle_config_path.setText(path) + + def _type_changed(self, row: int): + self._serial_changed(self.qle_serial.text()) + + def _serial_changed(self, text: str): + self.qle_name.setText("%s-%s" % (self.get_sensor_type(), text)) + + def accept(self): + if self.qle_config_path.text(): + meter = Gravimeter.from_ini(self.qle_config_path.text()) + pprint(meter.config) + else: + meter = Gravimeter(self.qle_name.text()) + self._project.add_child(meter) + + super().accept() diff --git a/dgp/gui/dialog/data_import_dialog.py b/dgp/gui/dialog/data_import_dialog.py new file mode 100644 index 0000000..b61f509 --- /dev/null +++ b/dgp/gui/dialog/data_import_dialog.py @@ -0,0 +1,149 @@ +# -*- coding: utf-8 -*- +import logging +from datetime import datetime +from pathlib import Path +from typing import Union + +from PyQt5.QtCore import Qt, pyqtSlot, pyqtSignal, QDate +from PyQt5.QtGui import QStandardItemModel +from PyQt5.QtWidgets import QDialog, QFileDialog, QListWidgetItem, QCalendarWidget + +import dgp.core.controllers.gravimeter_controller as mtr +from dgp.core.controllers.controller_interfaces import IAirborneController +from dgp.core.controllers.flight_controller import FlightController +from dgp.gui.ui.data_import_dialog import Ui_DataImportDialog +from dgp.core.models.data import DataFile +from dgp.core.types.enumerations import DataTypes + + +class DataImportDialog(QDialog, Ui_DataImportDialog): + load = pyqtSignal(DataFile) + + def __init__(self, controller: IAirborneController, datatype: DataTypes, base_path: str = None, parent=None): + super().__init__(parent=parent) + self.setupUi(self) + self.log = logging.getLogger(__name__) + + self._controller = controller + self._datatype = datatype + self._base_path = base_path or str(Path().home().resolve()) + self._type_map = {DataTypes.GRAVITY: 0, DataTypes.TRAJECTORY: 1} + self._type_filters = {DataTypes.GRAVITY: "Gravity (*.dat *.csv);;Any (*.*)", + DataTypes.TRAJECTORY: "Trajectory (*.dat *.csv *.txt);;Any (*.*)"} + + self._gravity = QListWidgetItem("Gravity") + self._gravity.setData(Qt.UserRole, DataTypes.GRAVITY) + self._trajectory = QListWidgetItem("Trajectory") + self._trajectory.setData(Qt.UserRole, DataTypes.TRAJECTORY) + + self.qlw_datatype.addItem(self._gravity) + self.qlw_datatype.addItem(self._trajectory) + self.qlw_datatype.setCurrentRow(self._type_map.get(datatype, 0)) + + self._flight_model = self._controller.flight_model # type: QStandardItemModel + self.qcb_flight.setModel(self._flight_model) + self.qde_date.setDate(datetime.today()) + self._calendar = QCalendarWidget() + self.qde_date.setCalendarWidget(self._calendar) + self.qde_date.setCalendarPopup(True) + + # Gravity Widget + self.qcb_gravimeter.currentIndexChanged.connect(self._gravimeter_changed) + self._meter_model = self._controller.meter_model # type: QStandardItemModel + self.qcb_gravimeter.setModel(self._meter_model) + self.qpb_add_sensor.clicked.connect(self._controller.add_gravimeter) + if self._meter_model.rowCount() == 0: + print("NO meters available") + self.qcb_gravimeter.setCurrentIndex(0) + + # Trajectory Widget + + # Signal connections + self.qlw_datatype.currentItemChanged.connect(self._datatype_changed) + self.qpb_browse.clicked.connect(self._browse) + self.qpb_add_flight.clicked.connect(self._controller.add_flight) + + def set_initial_flight(self, flight): + print("Setting initial flight to: " + str(flight)) + if flight is None: + return + + def _load_gravity(self, flt: FlightController): + col_fmt = self.qle_grav_format.text() + file = DataFile(flt.uid.base_uuid, 'gravity', self.date, self.file_path, col_fmt) + + # Important: We need to retrieve the ACTUAL flight controller, not the clone + fc = self._controller.get_child_controller(flt.proxied) + fc.add_child(file) + self.load.emit(file) + + def _load_trajectory(self): + pass + + @property + def file_path(self) -> Union[Path, None]: + if not len(self.qle_filepath.text()): + return None + return Path(self.qle_filepath.text()) + + @property + def datatype(self) -> DataTypes: + return self.qlw_datatype.currentItem().data(Qt.UserRole) + + @property + def _browse_path(self): + return self.file_path or self._base_path + + @property + def date(self) -> datetime: + _date: QDate = self.qde_date.date() + return datetime(_date.year(), _date.month(), _date.day()) + + def accept(self): + if self.file_path is None: + self.ql_path.setStyleSheet("color: red") + self.log.warning("Path cannot be empty.") + return + if not self.file_path.exists(): + self.ql_path.setStyleSheet("color: red") + self.log.warning("Path does not exist.") + return + if not self.file_path.is_file(): + self.ql_path.setStyleSheet("color: red") + self.log.warning("Path must be a file, not a directory.") + + # Note: This FlightController is a Clone + fc = self._flight_model.item(self.qcb_flight.currentIndex()) + + if self.datatype == DataTypes.GRAVITY: + self._load_gravity(fc) + return super().accept() + elif self.datatype == DataTypes.TRAJECTORY: + self._load_trajectory() + return super().accept() + + self.log.error("Unknown Datatype supplied to import dialog. %s", str(self.datatype)) + return super().accept() + + @pyqtSlot(name='_browse') + def _browse(self): + path, _ = QFileDialog.getOpenFileName(self, "Browse for data file", str(self._browse_path), + self._type_filters[self._datatype]) + if path: + self.qle_filepath.setText(path) + + @pyqtSlot(QListWidgetItem, QListWidgetItem, name='_datatype_changed') + def _datatype_changed(self, current: QListWidgetItem, previous: QListWidgetItem): + self._datatype = current.data(Qt.UserRole) + self.qsw_advanced_properties.setCurrentIndex(self._type_map[self._datatype]) + + @pyqtSlot(int, name='_gravimeter_changed') + def _gravimeter_changed(self, index: int): + meter_ctrl = self._controller.meter_model.item(index) + if not meter_ctrl: + self.log.debug("No meter available") + return + if isinstance(meter_ctrl, mtr.GravimeterController): + sensor_type = meter_ctrl.sensor_type or "Unknown" + self.qle_sensortype.setText(sensor_type) + self.qle_grav_format.setText(meter_ctrl.column_format) diff --git a/dgp/gui/dialogs.py b/dgp/gui/dialogs.py index 3f9610a..1712304 100644 --- a/dgp/gui/dialogs.py +++ b/dgp/gui/dialogs.py @@ -1,27 +1,23 @@ # -*- coding: utf-8 -*- -import os import csv import types import logging -import datetime import pathlib from typing import Union import PyQt5.QtWidgets as QtWidgets -from PyQt5.QtCore import Qt, QPoint, QModelIndex, QDate +from PyQt5.QtCore import Qt, QPoint, QModelIndex from PyQt5.QtGui import QIcon from PyQt5.QtWidgets import QListWidgetItem -from core.controllers.BaseProjectController import BaseProjectController -from core.controllers.FlightController import FlightController -from core.models.flight import Flight -from core.models.project import AirborneProject -from core.types import enumerations +from dgp.core.controllers.flight_controller import FlightController +from dgp.core.models.flight import Flight +from dgp.core.models.project import AirborneProject +from dgp.core.types import enumerations from dgp.gui.models import TableModel, ComboEditDelegate -from dgp.lib.etc import gen_uuid -from dgp.gui.ui import (add_flight_dialog, advanced_data_import, +from dgp.gui.ui import (advanced_data_import, edit_import_view, project_dialog, channel_select_dialog) PATH_ERR = "Path cannot be empty." @@ -143,16 +139,6 @@ def show_error(self, message): dlg.setWindowTitle("Error") dlg.exec_() - def validate_not_empty(self, terminator='*'): - """Validate that any labels with Widget buddies are not empty e.g. - QLineEdit fields. - Labels are only checked if their text value ends with the terminator, - default '*' - - If any widgets are empty, the label buddy attribute names are - returned in a list. - """ - class EditImportDialog(BaseDialog, edit_import_view.Ui_Dialog): """ @@ -319,7 +305,7 @@ class AdvancedImportDialog(BaseDialog, advanced_data_import.Ui_AdvancedImportDat Parent Widget """ - def __init__(self, project: BaseProjectController, controller: FlightController, data_type: str, + def __init__(self, project, controller: FlightController, data_type: str, parent=None): super().__init__(msg_recvr='label_msg', parent=parent) self.setupUi(self) @@ -359,7 +345,7 @@ def __init__(self, project: BaseProjectController, controller: FlightController, self.combo_meters.addItem("No Meters Available", None) if controller is not None: - flt_idx = self.combo_flights.findText(controller.entity.name) + flt_idx = self.combo_flights.findText(controller.name) self.combo_flights.setCurrentIndex(flt_idx) # Signals/Slots @@ -547,56 +533,6 @@ def browse(self): return -class AddFlightDialog(QtWidgets.QDialog, add_flight_dialog.Ui_NewFlight): - def __init__(self, project, *args): - super().__init__(*args) - self.setupUi(self) - self._project = project - self._flight = None - self._grav_path = None - self._gps_path = None - # self.combo_meter.addItems(project.meters) - # self.browse_gravity.clicked.connect(lambda: self.browse( - # field=self.path_gravity)) - # self.browse_gps.clicked.connect(lambda: self.browse( - # field=self.path_gps)) - self.date_flight.setDate(datetime.datetime.today()) - self._uid = gen_uuid('f') - self.text_uuid.setText(self._uid) - - def accept(self): - qdate = self.date_flight.date() # type: QDate - date = datetime.datetime(qdate.year(), qdate.month(), qdate.day()) - - # self._grav_path = self.path_gravity.text() - # self._gps_path = self.path_gps.text() - - self._flight = Flight(self.text_name.text(), date=date) - super().accept() - - def browse(self, field): - path, _ = QtWidgets.QFileDialog.getOpenFileName( - self, "Select Data File", os.getcwd(), "Data (*.dat *.csv *.txt)") - if path: - field.setText(path) - - @property - def flight(self) -> Flight: - return self._flight - - @property - def gps(self): - if self._gps_path is not None and len(self._gps_path) > 0: - return pathlib.Path(self._gps_path) - return None - - @property - def gravity(self): - if self._grav_path is not None and len(self._grav_path) > 0: - return pathlib.Path(self._grav_path) - return None - - class ChannelSelectionDialog(BaseDialog, channel_select_dialog.Ui_ChannelSelection): def __init__(self, parent=None): diff --git a/dgp/gui/ui/add_flight_dialog.ui b/dgp/gui/ui/add_flight_dialog.ui index 6d2abe7..94cb043 100644 --- a/dgp/gui/ui/add_flight_dialog.ui +++ b/dgp/gui/ui/add_flight_dialog.ui @@ -29,31 +29,31 @@ - - + + Flight Name (Reference)* - text_name + qle_flight_name - - + + - - + + Flight Date - date_flight + qde_flight_date - - + + yyyy-MM-dd @@ -69,160 +69,48 @@ - - + + - Gravity Meter + Sensor - combo_meter + cb_gravimeters - - - - Flight UUID - - - - - - - - - false - - - true - - + - + - Gravity Data - - - path_gravity + Flight Notes - - - - - - 2 - 0 - - - - - 200 - 0 - - - - - - - - - - - - 0 - 0 - - - - - 16777215 - 16777215 - - - - - 50 - 0 - - - - Browse - - - Browse - - - ... - - - - + - - + + - GPS Data + Flight Sequence - - path_gps + + + + + + + + + Flight Duration - - - - - - - 2 - 0 - - - - - 200 - 0 - - - - - - - - - - - - 0 - 0 - - - - - 16777215 - 16777215 - - - - - 50 - 0 - - - - Browse - - - ... - - - - + + @@ -265,12 +153,6 @@ - - path_gravity - browse_gravity - path_gps - browse_gps - diff --git a/dgp/gui/ui/add_meter_dialog.ui b/dgp/gui/ui/add_meter_dialog.ui new file mode 100644 index 0000000..b112a96 --- /dev/null +++ b/dgp/gui/ui/add_meter_dialog.ui @@ -0,0 +1,165 @@ + + + AddMeterDialog + + + + 0 + 0 + 640 + 480 + + + + Dialog + + + + 0 + + + 0 + + + 9 + + + + + + 0 + 0 + + + + QAbstractItemView::NoEditTriggers + + + + + + + + + + + Gravimeter Serial # + + + qle_serial + + + + + + + + + + Name + + + + + + + false + + + + + + + Configuration (ini) + + + qle_config_path + + + + + + + + + + + + ... + + + + + + + + + + + Qt::Vertical + + + + 20 + 40 + + + + + + + + Qt::Horizontal + + + + + + + Qt::Horizontal + + + QDialogButtonBox::Cancel|QDialogButtonBox::Ok + + + + + + + + + + + dialog_btns + accepted() + AddMeterDialog + accept() + + + 248 + 254 + + + 157 + 274 + + + + + dialog_btns + rejected() + AddMeterDialog + reject() + + + 316 + 260 + + + 286 + 274 + + + + + diff --git a/dgp/gui/ui/data_import_dialog.ui b/dgp/gui/ui/data_import_dialog.ui index a8fd093..e0260b7 100644 --- a/dgp/gui/ui/data_import_dialog.ui +++ b/dgp/gui/ui/data_import_dialog.ui @@ -1,136 +1,468 @@ - Dialog - - - Qt::ApplicationModal - + DataImportDialog + 0 0 - 418 - 500 + 732 + 629 - + 0 0 - - - 300 - 500 - - - + - 600 - 1200 + 50 + 0 - Import Data + Data Import - - :/images/assets/geoid_icon.png:/images/assets/geoid_icon.png + + :/icons/new_file.png:/icons/new_file.png - - - - - Data Type - - - - - - &Gravity Data - - - true - - - group_radiotype - - - - - - - G&PS Data - - - group_radiotype - - - - - - - - - - Qt::Horizontal - - - QDialogButtonBox::Cancel|QDialogButtonBox::Ok - - - - - - - - - - - - - true - - - - - - - - - - &Browse - - + + true + + + + 0 + + + QLayout::SetDefaultConstraint + + + 5 + + + 5 + + + + + + + + 0 + 0 + + + + + - - - - <html><head/><body><p align="center"><span style=" font-size:12pt;">Flight</span></p></body></html> + + + + 8 - - - - - - <html><head/><body><p align="center"><span style=" font-size:12pt;">Meter</span></p></body></html> + + 2 - + + + + 8 + + + 4 + + + 4 + + + 4 + + + 4 + + + + + Path* + + + qle_filepath + + + + + + + 2 + + + + + + + + Browse... + + + + 20 + 20 + + + + + + + + + + Tag + + + qle_filetag + + + + + + + + + + Flight + + + qcb_flight + + + + + + + + + + 0 + 0 + + + + + + + + Add Flight + + + Add Flight... + + + + + + + + + Date + + + + + + + Notes + + + qpte_notes + + + + + + + Qt::ScrollBarAlwaysOff + + + + + + + + + + + + 0 + + + + + 12 + + + + + Gravity Import + + + 0 + + + + + + + 4 + + + + + Gravimeter + + + + + + + 2 + + + + + + 0 + 0 + + + + + + + + Add Gravimeter + + + Add Gravimeter... + + + + + + + + + Sensor Type + + + + + + + false + + + + + + + Column Format + + + + + + + 2 + + + + + false + + + + + + + false + + + ... + + + + + + + + + + + Qt::Vertical + + + + 20 + 40 + + + + + + + + + + + + Trajectory Import + + + + + + + + + Column Format + + + + + + + + + + + + Qt::Vertical + + + + 20 + 40 + + + + + + + + + + + + + + File Info: + + + + + + + + + File Size (MiB) + + + + + + + false + + + + + + + Line Count + + + + + + + false + + + + + + + Column Count + + + + + + + false + + + + + + + + + + + + 0 + 0 + + + + Qt::Horizontal + + + QDialogButtonBox::Cancel|QDialogButtonBox::Ok + + + false + + + + - + + + - buttonBox + btn_dialog + accepted() + DataImportDialog + accept() + + + 253 + 408 + + + 157 + 274 + + + + + btn_dialog rejected() - Dialog + DataImportDialog reject() - 316 - 260 + 321 + 408 286 @@ -139,7 +471,4 @@ - - - From 90869c04eb4f2c785a91d7b01801946daff9b4be Mon Sep 17 00:00:00 2001 From: Zachery Brady Date: Thu, 28 Jun 2018 10:40:37 -0600 Subject: [PATCH 118/236] Added functionality and various fields to base project models. Added ability to import gravimeter configuration from INI. Added support for serialization/de-serialization of select non-primitive Python types such as datetime, and pathlib.Path which are used in the project. Fixed inconsistent imports causing type comparison errors. All modules must use absolute imports with 'dgp' as the base, or relative imports from their parent module. --- dgp/core/models/ProjectTreeModel.py | 13 +++-- dgp/core/models/data.py | 43 +++++++++++++--- dgp/core/models/flight.py | 58 +++++++++++++++++---- dgp/core/models/meter.py | 76 ++++++++++++++++----------- dgp/core/models/project.py | 80 +++++++++++++++++++---------- dgp/core/oid.py | 49 ++++++++++-------- dgp/core/views/ProjectTreeView.py | 10 ++-- tests/test_project_models.py | 51 +++++++++--------- 8 files changed, 250 insertions(+), 130 deletions(-) diff --git a/dgp/core/models/ProjectTreeModel.py b/dgp/core/models/ProjectTreeModel.py index d72335b..fcee49c 100644 --- a/dgp/core/models/ProjectTreeModel.py +++ b/dgp/core/models/ProjectTreeModel.py @@ -1,11 +1,11 @@ # -*- coding: utf-8 -*- from typing import Optional -from PyQt5.QtCore import QObject, QModelIndex, pyqtSignal, pyqtSlot +from PyQt5.QtCore import QObject, QModelIndex, pyqtSignal, pyqtSlot, QSortFilterProxyModel, Qt from PyQt5.QtGui import QStandardItemModel -from core.controllers.FlightController import FlightController -from core.controllers.BaseProjectController import BaseProjectController +from dgp.core.controllers.flight_controller import FlightController +from dgp.core.controllers.project_controllers import AirborneProjectController __all__ = ['ProjectTreeModel'] @@ -20,13 +20,13 @@ class ProjectTreeModel(QStandardItemModel): # Fired on any project mutation - can be used to autosave project_changed = pyqtSignal() - def __init__(self, root: BaseProjectController, parent: Optional[QObject]=None): + def __init__(self, root: AirborneProjectController, parent: Optional[QObject]=None): super().__init__(parent) self._root = root self.appendRow(self._root) @property - def root_controller(self) -> BaseProjectController: + def root_controller(self) -> AirborneProjectController: return self._root @pyqtSlot(QModelIndex, name='on_click') @@ -35,7 +35,6 @@ def on_click(self, index: QModelIndex): @pyqtSlot(QModelIndex, name='on_double_click') def on_double_click(self, index: QModelIndex): - print("Double click received in model") item = self.itemFromIndex(index) if isinstance(item, FlightController): - self.root_controller.set_active(item) + self.root_controller.set_active_child(item) diff --git a/dgp/core/models/data.py b/dgp/core/models/data.py index faabdfe..715f816 100644 --- a/dgp/core/models/data.py +++ b/dgp/core/models/data.py @@ -1,31 +1,58 @@ # -*- encoding: utf-8 -*- +from datetime import datetime from pathlib import Path from typing import Optional -from core.oid import OID +from dgp.core.oid import OID class DataFile: - __slots__ = '_uid', '_hdfpath', '_label', '_group', '_source_path', '_column_format' + __slots__ = ('_parent', '_uid', '_date', '_name', '_group', '_source_path', + '_column_format') - def __init__(self, hdfpath: str, label: str, group: str, source_path: Optional[Path] = None, + def __init__(self, parent: str, group: str, date: datetime, source_path: Optional[Path] = None, column_format=None, uid: Optional[str] = None): - self._uid = OID(self, _uid=uid) - self._hdfpath = hdfpath - self._label = label + self._parent = parent + self._uid = uid or OID(self) + self._uid.set_pointer(self) self._group = group + self._date = date self._source_path = source_path + if self._source_path is not None: + self._name = self._source_path.name + else: + self._name = self._uid.base_uuid[:8] self._column_format = column_format @property def uid(self) -> OID: return self._uid + @property + def name(self) -> str: + """Return the file name of the source data file""" + return self._name + + @property + def label(self) -> str: + return "[%s] %s" % (self.group, self.name) + @property def group(self) -> str: return self._group - def __str__(self): - return "(%s) %s :: %s" % (self._group, self._label, self._hdfpath) + @property + def hdfpath(self) -> str: + return '/{parent}/{group}/{uid}'.format(parent=self._parent, + group=self._group, uid=self._uid.base_uuid) + + @property + def source_path(self) -> Path: + if self._source_path is not None: + return Path(self._source_path) + def __str__(self): + return "(%s) :: %s" % (self._group, self.hdfpath) + def __hash__(self): + return hash(self._uid) diff --git a/dgp/core/models/flight.py b/dgp/core/models/flight.py index b6588e5..31f8474 100644 --- a/dgp/core/models/flight.py +++ b/dgp/core/models/flight.py @@ -2,18 +2,18 @@ from datetime import datetime from typing import List, Optional, Union -from core.models.data import DataFile -from .meter import Gravimeter -from ..oid import OID +from dgp.core.models.data import DataFile +from dgp.core.models.meter import Gravimeter +from dgp.core.oid import OID class FlightLine: __slots__ = '_uid', '_start', '_stop', '_sequence' def __init__(self, start: float, stop: float, sequence: int, - uid: Optional[str] = None): - self._uid = OID(self, _uid=uid) - + uid: Optional[OID] = None): + self._uid = uid or OID(self) + self._uid.set_pointer(self) self._start = start self._stop = stop self._sequence = sequence @@ -52,16 +52,22 @@ class Flight: Define a Flight class used to record and associate data with an entire survey flight (takeoff -> landing) """ - __slots__ = '_uid', '_name', '_flight_lines', '_data_files', '_meters', '_date' + __slots__ = ('_uid', '_name', '_flight_lines', '_data_files', '_meters', '_date', + '_notes', '_sequence', '_duration') - def __init__(self, name: str, date: datetime = None, uid: Optional[str] = None, **kwargs): - self._uid = OID(self, tag=name, _uid=uid) + def __init__(self, name: str, date: Optional[datetime] = None, notes: Optional[str] = None, + sequence: int = 0, duration: int = 0, uid: Optional[OID] = None, **kwargs): + self._uid = uid or OID(self, name) + self._uid.set_pointer(self) self._name = name + self._date = date + self._notes = notes + self._sequence = sequence + self._duration = duration self._flight_lines = kwargs.get('flight_lines', []) # type: List[FlightLine] self._data_files = kwargs.get('data_files', []) # type: List[DataFile] self._meters = kwargs.get('meters', []) # type: List[OID] - self._date = date @property def name(self) -> str: @@ -71,6 +77,38 @@ def name(self) -> str: def name(self, value: str) -> None: self._name = value + @property + def date(self) -> datetime: + return self._date + + @date.setter + def date(self, value: datetime) -> None: + self._date = value + + @property + def notes(self) -> str: + return self._notes + + @notes.setter + def notes(self, value: str) -> None: + self._notes = value + + @property + def sequence(self) -> int: + return self._sequence + + @sequence.setter + def sequence(self, value: int) -> None: + self._sequence = value + + @property + def duration(self) -> int: + return self._duration + + @duration.setter + def duration(self, value: int) -> None: + self._duration = value + @property def uid(self) -> OID: return self._uid diff --git a/dgp/core/models/meter.py b/dgp/core/models/meter.py index f097281..b2a1669 100644 --- a/dgp/core/models/meter.py +++ b/dgp/core/models/meter.py @@ -7,14 +7,31 @@ import os from typing import Optional -from ..oid import OID +from dgp.core.oid import OID + + +sensor_fields = ['g0', 'GravCal', 'LongCal', 'CrossCal', 'LongOffset', 'CrossOffset', 'stempgain', + 'Temperature', 'stempoffset', 'pressgain', 'presszero', 'beamgain', 'beamzero', + 'Etempgain', 'Etempzero'] +# Cross coupling Fields +cc_fields = ['vcc', 've', 'al', 'ax', 'monitors'] + +# Platform Fields +platform_fields = ['Cross_Damping', 'Cross_Periode', 'Cross_Lead', 'Cross_Gain', 'Cross_Comp', + 'Cross_Phcomp', 'Cross_sp', 'Long_Damping', 'Long_Periode', 'Long_Lead', 'Long_Gain', + 'Long_Comp', 'Long_Phcomp', 'Long_sp', 'zerolong', 'zerocross', 'CrossSp', 'LongSp'] + +valid_fields = set().union(sensor_fields, cc_fields, platform_fields) class Gravimeter: - def __init__(self, name: str, uid: Optional[str]=None, **kwargs): - self._uid = OID(self, _uid=uid) + def __init__(self, name: str, config: dict = None, uid: Optional[OID] = None, **kwargs): + self._uid = uid or OID(self) + self._uid.set_pointer(self) self._type = "AT1A" self._name = name + self._column_format = "AT1A Airborne" + self._config = config self._attributes = kwargs.get('attributes', {}) @property @@ -30,41 +47,38 @@ def name(self, value: str) -> None: # ToDo: Regex validation? self._name = value - # TODO: Old methods from meterconfig - evaluate and reconfigure - @staticmethod - def get_valid_fields(): - # Sensor fields - sensor_fields = ['g0', 'GravCal', 'LongCal', 'CrossCal', 'LongOffset', 'CrossOffset', 'stempgain', - 'Temperature', 'stempoffset', 'pressgain', 'presszero', 'beamgain', 'beamzero', - 'Etempgain', 'Etempzero'] - # Cross coupling Fields - cc_fields = ['vcc', 've', 'al', 'ax', 'monitors'] - - # Platform Fields - platform_fields = ['Cross_Damping', 'Cross_Periode', 'Cross_Lead', 'Cross_Gain', 'Cross_Comp', - 'Cross_Phcomp', 'Cross_sp', 'Long_Damping', 'Long_Periode', 'Long_Lead', 'Long_Gain', - 'Long_Comp', 'Long_Phcomp', 'Long_sp', 'zerolong', 'zerocross', 'CrossSp', 'LongSp'] - - # Create a set with all unique and valid field keys - return set().union(sensor_fields, cc_fields, platform_fields) + @property + def column_format(self): + return self._column_format + + @property + def sensor_type(self) -> str: + return self._type + + @property + def config(self) -> dict: + return self._config + + @config.setter + def config(self, value: dict) -> None: + self._config = value @staticmethod - def process_config(valid_fields, **config): + def process_config(**config): """Return a config dictionary by filtering out invalid fields, and lower-casing all keys""" - def cast(value): + + def safe_cast(value): try: return float(value) except ValueError: return value - return {k.lower(): cast(v) for k, v in config.items() if k.lower() in map(str.lower, valid_fields)} + return {k.lower(): safe_cast(v) for k, v in config.items() if k.lower() in map(str.lower, valid_fields)} - @staticmethod - def from_ini(path): + @classmethod + def from_ini(cls, path, name=None): """ Read an AT1 Meter Configuration from a meter ini file - :param path: path to meter ini file - :return: instance of AT1Meter with configuration set by ini file """ if not os.path.exists(path): raise OSError("Invalid path to ini.") @@ -75,10 +89,12 @@ def from_ini(path): xcoupling_fld = dict(config['crosscouplings']) platform_fld = dict(config['Platform']) - name = str.strip(sensor_fld['meter'], '"') + name = name or str.strip(sensor_fld['meter'], '"') merge_config = {**sensor_fld, **xcoupling_fld, **platform_fld} - # at1config = AT1Meter.process_config(AT1Meter.get_valid_fields(), **merge_config) - # return AT1Meter(name, **at1config) + clean_config = cls.process_config(**merge_config) + + return cls(name, config=clean_config) +# TODO: Use sub-classes to define different Meter Types? diff --git a/dgp/core/models/project.py b/dgp/core/models/project.py index ba134e4..1ea7ab1 100644 --- a/dgp/core/models/project.py +++ b/dgp/core/models/project.py @@ -8,44 +8,63 @@ import json from datetime import datetime from pathlib import Path +from pprint import pprint from typing import Optional, List, Any, Dict, Union -from ..oid import OID -from .flight import Flight, FlightLine, DataFile -from .meter import Gravimeter +from dgp.core.oid import OID +from dgp.core.models.flight import Flight, FlightLine, DataFile +from dgp.core.models.meter import Gravimeter -klass_map = {'Flight': Flight, 'FlightLine': FlightLine, 'DataFile': DataFile, - 'Gravimeter': Gravimeter} +project_entities = {'Flight': Flight, 'FlightLine': FlightLine, 'DataFile': DataFile, + 'Gravimeter': Gravimeter} class ProjectEncoder(json.JSONEncoder): + """ + The ProjectEncoder allows complex project objects to be encoded into + a standard JSON representation. + Classes are matched and encoded by type, with Project class instances + defined in the project_entities module variable. + Project classes simply have their __slots__ or __dict__ mapped to a JSON + object (Dictionary), with any recognized complex objects within the class + iteratively encoded by the encoder. + + A select number of other 'complex' objects are also capable of being + encoded by this encoder, such as OID's, datetimes, and pathlib.Path objects. + An _type variable is inserted into the JSON output, and used by the decoder + to determine how to decode and reconstruct the object into a Python native + object. + + """ + def default(self, o: Any): - if isinstance(o, (AirborneProject, *klass_map.values())): + if isinstance(o, (AirborneProject, *project_entities.values())): keys = o.__slots__ if hasattr(o, '__slots__') else o.__dict__.keys() attrs = {key.lstrip('_'): getattr(o, key) for key in keys} attrs['_type'] = o.__class__.__name__ return attrs if isinstance(o, OID): - return o.base_uuid + return {'_type': OID.__name__, 'base_uuid': o.base_uuid} if isinstance(o, Path): - return str(o) + return {'_type': Path.__name__, 'path': str(o.resolve())} if isinstance(o, datetime): - return o.timestamp() + return {'_type': datetime.__name__, 'timestamp': o.timestamp()} return super().default(o) class GravityProject: def __init__(self, name: str, path: Union[Path, str], description: Optional[str] = None, - create_date: Optional[float] = datetime.utcnow().timestamp(), uid: Optional[str] = None, **kwargs): - self._uid = OID(self, tag=name, _uid=uid) + create_date: Optional[datetime] = None, modify_date: Optional[datetime] = None, + uid: Optional[str] = None, **kwargs): + self._uid = uid or OID(self, tag=name) + self._uid.set_pointer(self) self._name = name self._path = path self._projectfile = 'dgp.json' self._description = description - self._create_date = datetime.fromtimestamp(create_date) - self._modify_date = datetime.fromtimestamp(kwargs.get('modify_date', - datetime.utcnow().timestamp())) + self._create_date = create_date or datetime.utcnow() + self._modify_date = modify_date or self._create_date self._gravimeters = kwargs.get('gravimeters', []) # type: List[Gravimeter] self._attributes = kwargs.get('attributes', {}) # type: Dict[str, Any] @@ -95,6 +114,8 @@ def add_child(self, child) -> None: if isinstance(child, Gravimeter): self._gravimeters.append(child) self._modify() + else: + print("Invalid child: " + str(type(child))) def remove_child(self, child_id: OID) -> bool: child = child_id.reference # type: Gravimeter @@ -150,20 +171,26 @@ def object_hook(cls, json_o: Dict): the class map which allows for this object hook to be utilized by any inheritor without modification. """ - if '_type' in json_o: - _type = json_o.pop('_type') - if _type == cls.__name__: - klass = cls - else: - klass = klass_map.get(_type, None) - if klass is None: - raise AttributeError("Unexpected class %s in JSON data. Class is not defined" - " in class map." % _type) - params = {key.lstrip('_'): value for key, value in json_o.items()} - return klass(**params) - else: + if '_type' not in json_o: return json_o + _type = json_o.pop('_type') + params = {key.lstrip('_'): value for key, value in json_o.items()} + if _type == cls.__name__: + return cls(**params) + elif _type == OID.__name__: + return OID(**params) + elif _type == datetime.__name__: + return datetime.fromtimestamp(*params.values()) + elif _type == Path.__name__: + return Path(*params.values()) + else: + klass = project_entities.get(_type, None) + if klass is None: + raise AttributeError("Unhandled class %s in JSON data. Class is not defined" + " in class map." % _type) + return klass(**params) + @classmethod def from_json(cls, json_str: str) -> 'GravityProject': return json.loads(json_str, object_hook=cls.object_hook) @@ -176,6 +203,7 @@ def to_json(self, to_file=False, indent=None) -> Union[str, bool]: except IOError: raise else: + pprint(json.dumps(self, cls=ProjectEncoder, indent=2)) return True return json.dumps(self, cls=ProjectEncoder, indent=indent) diff --git a/dgp/core/oid.py b/dgp/core/oid.py index 906696c..421d37a 100644 --- a/dgp/core/oid.py +++ b/dgp/core/oid.py @@ -1,51 +1,62 @@ # -*- coding: utf-8 -*- -from typing import Optional, Union +from typing import Optional, Union, Any from uuid import uuid4 _registry = {} -def get_oid(oid: 'OID'): - if oid.base_uuid in _registry: - return _registry[oid.base_uuid] +def get_oid(uuid: str): + pass class OID: """Object IDentifier - Replacing simple str UUID's that had been used. OID's hold a reference to the object it was created for. """ - def __init__(self, obj, tag: Optional[str]=None, _uid: str=None): - if _uid is not None: - assert len(_uid) == 32 - self._base_uuid = _uid or uuid4().hex - self._group = obj.__class__.__name__[0:6].lower() - self._uuid = '{}_{}'.format(self._group, self._base_uuid) + + def __init__(self, obj: Optional[Any] = None, tag: Optional[str] = None, base_uuid: str = None): + if base_uuid is not None and isinstance(base_uuid, str): + assert len(base_uuid) == 32 + self._base_uuid = base_uuid or uuid4().hex self._tag = tag self._pointer = obj _registry[self._base_uuid] = self + def set_pointer(self, obj): + self._pointer = obj + @property - def tag(self): - return self._tag + def base_uuid(self): + return self._base_uuid + + @property + def uuid(self): + return '%s_%s' % (self.group, self._base_uuid) @property def reference(self) -> object: return self._pointer @property - def base_uuid(self): - return self._base_uuid + def group(self) -> str: + if self._pointer is not None: + return self._pointer.__class__.__name__.lower() + return "oid" + + @property + def tag(self): + return self._tag def __str__(self): - return self._uuid + return self.uuid def __repr__(self): - return "" % (self._tag, self._uuid, self._pointer.__class__.__name__) + return "" % (self._tag, self.uuid, self.group) def __eq__(self, other: Union['OID', str]) -> bool: if isinstance(other, str): - return other == self._base_uuid or other == self._uuid + return other == self._base_uuid or other == self.uuid try: return self._base_uuid == other.base_uuid except AttributeError: @@ -55,11 +66,9 @@ def __hash__(self): return hash(self.base_uuid) def __del__(self): - # print("Deleting OID from registry: " + self._base_uuid) try: - del _registry[self._base_uuid] + del _registry[self.base_uuid] except KeyError: pass else: pass - # print("Key deleted sucessfully") diff --git a/dgp/core/views/ProjectTreeView.py b/dgp/core/views/ProjectTreeView.py index ccafd20..4cce1b7 100644 --- a/dgp/core/views/ProjectTreeView.py +++ b/dgp/core/views/ProjectTreeView.py @@ -6,9 +6,9 @@ from PyQt5.QtGui import QContextMenuEvent, QStandardItem from PyQt5.QtWidgets import QTreeView, QMenu -from core.controllers.FlightController import FlightController -from core.controllers.ProjectController import BaseProjectController -from core.models.ProjectTreeModel import ProjectTreeModel +from dgp.core.controllers.flight_controller import FlightController +from dgp.core.controllers.project_controllers import AirborneProjectController +from dgp.core.models.ProjectTreeModel import ProjectTreeModel class ProjectTreeView(QTreeView): @@ -90,12 +90,12 @@ def contextMenuEvent(self, event: QContextMenuEvent, *args, **kwargs): # pprint(ancestor_bindings) # bindings.extend(ancestor_bindings) - if isinstance(item, BaseProjectController) or issubclass(item.__class__, BaseProjectController): + if isinstance(item, AirborneProjectController): bindings.insert(0, ('addAction', ("Expand All", self.expandAll))) bindings.append(('addAction', ("Expand" if not expanded else "Collapse", lambda: self.setExpanded(index, not expanded)))) - bindings.append(('addAction', ("Properties", self._get_item_attr(item, 'properties')))) + # bindings.append(('addAction', ("Properties", self._get_item_attr(item, 'properties')))) self._build_menu(menu, bindings) menu.exec_(event.globalPos()) diff --git a/tests/test_project_models.py b/tests/test_project_models.py index e19196c..361a1e1 100644 --- a/tests/test_project_models.py +++ b/tests/test_project_models.py @@ -6,18 +6,22 @@ """ import json import time +from datetime import datetime +from typing import Tuple +from uuid import uuid4 from pathlib import Path from pprint import pprint import pytest -from core.models import project, flight -from core.models.meter import Gravimeter +from dgp.core.models import project, flight +from dgp.core.models.meter import Gravimeter @pytest.fixture() def make_flight(): - def _factory(name): - return flight.Flight(name) + def _factory() -> Tuple[str, flight.Flight]: + name = str(uuid4().hex)[:12] + return name, flight.Flight(name) return _factory @@ -36,11 +40,11 @@ def test_flight_actions(make_flight, make_line): flt = flight.Flight('test_flight') assert 'test_flight' == flt.name - f1 = make_flight('Flight-1') # type: flight.Flight - f2 = make_flight('Flight-2') # type: flight.Flight + f1_name, f1 = make_flight() # type: flight.Flight + f2_name, f2 = make_flight() # type: flight.Flight - assert 'Flight-1' == f1.name - assert 'Flight-2' == f2.name + assert f1_name == f1.name + assert f2_name == f2.name assert not f1.uid == f2.uid @@ -70,7 +74,7 @@ def test_flight_actions(make_flight, make_line): assert line2 in f1.flight_lines assert 2 == len(f1.flight_lines) - assert '' % f1.uid == repr(f1) + assert '' % (f1_name, f1.uid) == repr(f1) def test_project_actions(): @@ -96,16 +100,16 @@ def test_project_attr(make_flight): assert 2345 == prj['_my_private_val'] assert 2345 == prj.get_attr('_my_private_val') - flt1 = make_flight('flight-1') + f1_name, flt1 = make_flight() prj.add_child(flt1) - # assert flt1.parent == prj.uid + # TODO: What am I testing here? def test_project_get_child(make_flight): prj = project.AirborneProject(name="Project-2", path=Path('.')) - f1 = make_flight('Flt-1') - f2 = make_flight('Flt-2') - f3 = make_flight('Flt-3') + f1_name, f1 = make_flight() + f2_name, f2 = make_flight() + f3_name, f3 = make_flight() prj.add_child(f1) prj.add_child(f2) prj.add_child(f3) @@ -117,9 +121,9 @@ def test_project_get_child(make_flight): def test_project_remove_child(make_flight): prj = project.AirborneProject(name="Project-3", path=Path('.')) - f1 = make_flight('Flt-1') - f2 = make_flight('Flt-2') - f3 = make_flight('Flt-3') + f1_name, f1 = make_flight() + f2_name, f2 = make_flight() + f3_name, f3 = make_flight() prj.add_child(f1) prj.add_child(f2) @@ -140,9 +144,9 @@ def test_project_serialize(make_flight, make_line): prj_path = Path('./prj-1') prj = project.AirborneProject(name="Project-3", path=prj_path, description="Test Project Serialization") - f1 = make_flight('flt1') # type: flight.Flight + f1_name, f1 = make_flight() # type: flight.Flight line1 = make_line(0, 10) # type: # flight.FlightLine - data1 = flight.DataFile('/%s' % f1.uid.base_uuid, 'df1', 'gravity') + data1 = flight.DataFile(f1.uid, 'gravity', datetime.today()) f1.add_child(line1) f1.add_child(data1) prj.add_child(f1) @@ -162,7 +166,6 @@ def test_project_deserialize(make_flight, make_line): 'attr2': 192.201, 'attr3': False, 'attr4': "Notes on project" - } prj = project.AirborneProject(name="SerializeTest", path=Path('./prj1'), description="Test DeSerialize") @@ -172,8 +175,8 @@ def test_project_deserialize(make_flight, make_line): assert attrs == prj._attributes - f1 = make_flight("Flt1") # type: flight.Flight - f2 = make_flight("Flt2") + f1_name, f1 = make_flight() # type: flight.Flight + f2_name, f2 = make_flight() line1 = make_line(0, 10) # type: flight.FlightLine line2 = make_line(11, 20) f1.add_child(line1) @@ -195,8 +198,8 @@ def test_project_deserialize(make_flight, make_line): assert prj.creation_time == prj_deserialized.creation_time flt_names = [flt.name for flt in prj_deserialized.flights] - assert "Flt1" in flt_names - assert "Flt2" in flt_names + assert f1_name in flt_names + assert f2_name in flt_names f1_reconstructed = prj_deserialized.get_child(f1.uid) assert f1.uid in [flt.uid for flt in prj_deserialized.flights] From e3498b6194fd29844bd24e6d9d589ea287c6ec07 Mon Sep 17 00:00:00 2001 From: Zachery Brady Date: Thu, 28 Jun 2018 10:43:09 -0600 Subject: [PATCH 119/236] Refactoring from project model changes. Removal of deprecated code in main.py, integration with new model/controller project interface. --- .gitignore | 2 + dgp/gui/dialogs.py | 348 +---------------------------- dgp/gui/loader.py | 123 ---------- dgp/gui/main.py | 204 +++++------------ dgp/gui/plotting/plotters.py | 74 +----- dgp/gui/splash.py | 2 +- dgp/gui/workspace.py | 17 +- dgp/gui/workspaces/PlotTab.py | 2 +- dgp/gui/workspaces/TransformTab.py | 19 +- dgp/lib/transform/display.py | 108 --------- tests/test_dialogs.py | 111 +++++---- tests/test_loader.py | 80 +------ 12 files changed, 129 insertions(+), 961 deletions(-) delete mode 100644 dgp/gui/loader.py delete mode 100644 dgp/lib/transform/display.py diff --git a/.gitignore b/.gitignore index f3dcd14..8c77f5c 100644 --- a/.gitignore +++ b/.gitignore @@ -5,6 +5,8 @@ *.pyo *.coverage *.vsdx +*.hdf5 +*.h5 # Ignored directories __pycache__/ diff --git a/dgp/gui/dialogs.py b/dgp/gui/dialogs.py index 1712304..2c3068d 100644 --- a/dgp/gui/dialogs.py +++ b/dgp/gui/dialogs.py @@ -1,24 +1,15 @@ # -*- coding: utf-8 -*- -import csv import types import logging -import pathlib from typing import Union import PyQt5.QtWidgets as QtWidgets from PyQt5.QtCore import Qt, QPoint, QModelIndex -from PyQt5.QtGui import QIcon -from PyQt5.QtWidgets import QListWidgetItem -from dgp.core.controllers.flight_controller import FlightController -from dgp.core.models.flight import Flight -from dgp.core.models.project import AirborneProject -from dgp.core.types import enumerations from dgp.gui.models import TableModel, ComboEditDelegate -from dgp.gui.ui import (advanced_data_import, - edit_import_view, project_dialog, channel_select_dialog) +from dgp.gui.ui import edit_import_view PATH_ERR = "Path cannot be empty." @@ -286,343 +277,6 @@ def _custom_label(self, index: QModelIndex): return -class AdvancedImportDialog(BaseDialog, advanced_data_import.Ui_AdvancedImportData): - """ - Provides a dialog for importing Trajectory or Gravity data. - This dialog computes and displays some basic file information, - and provides a mechanism for previewing and adjusting column headers via - the EditImportDialog class. - - Parameters - ---------- - project : GravityProject - Parent project - flight : Flight - Currently selected flight when Import button was clicked - dtype : dgp.lib.enums.DataTypes - Data type to import using this dialog, GRAVITY or TRAJECTORY - parent : QWidget - Parent Widget - """ - - def __init__(self, project, controller: FlightController, data_type: str, - parent=None): - super().__init__(msg_recvr='label_msg', parent=parent) - self.setupUi(self) - - self._preview_limit = 5 - self._path = None - self._dtype = data_type - self._file_filter = "(*.csv *.dat *.txt)" - self._base_dir = '.' - self._sample = None - - icon = {'gravity': ':icons/gravity', - 'trajectory': ':icons/gps'}.get(data_type.lower(), '') - self.setWindowIcon(QIcon(icon)) - self.setWindowTitle("Import {}".format(data_type.capitalize())) - - # Establish field enum based on data_type - self._fields = {'gravity': enumerations.GravityTypes, - 'trajectory': enumerations.GPSFields}[data_type.lower()] - - formats = sorted(self._fields, key=lambda x: x.name) - for item in formats: - name = str(item.name).upper() - self.cb_format.addItem(name, item) - - editable = self._dtype == enumerations.DataTypes.TRAJECTORY - self._editor = EditImportDialog(formats=formats, - edit_header=editable, - parent=self) - - self.combo_flights.setModel(project.flight_model) - if not self.combo_flights.count(): - self.combo_flights.addItem("No Flights Available", None) - - self.combo_meters.setModel(project.meter_model) - if not self.combo_meters.count(): - self.combo_meters.addItem("No Meters Available", None) - - if controller is not None: - flt_idx = self.combo_flights.findText(controller.name) - self.combo_flights.setCurrentIndex(flt_idx) - - # Signals/Slots - self.cb_format.currentIndexChanged.connect( - lambda idx: self.editor.cb_format.setCurrentIndex(idx)) - self.btn_browse.clicked.connect(self.browse) - self.btn_edit_cols.clicked.connect(self._edit) - - @property - def params(self): - return dict(subtype=self.format, - skiprows=self.editor.skiprow, - columns=self.editor.columns) - - @property - def editor(self) -> EditImportDialog: - return self._editor - - @property - def cb_format(self) -> QtWidgets.QComboBox: - return self.cb_data_fmt - - @property - def format(self): - return self.cb_format.currentData() - - @format.setter - def format(self, value): - if isinstance(value, str): - idx = self.cb_format.findText(value) - else: - idx = self.cb_format.findData(value) - if idx == -1: - self.cb_format.setCurrentIndex(0) - else: - self.cb_format.setCurrentIndex(idx) - self.editor.format = value - - @property - def flight(self): - return self.combo_flights.currentData(Qt.UserRole) - - @property - def path(self) -> pathlib.Path: - return self._path - - @path.setter - def path(self, value): - if value is None: - self._path = None - self.btn_edit_cols.setEnabled(False) - self.btn_dialog.button(QtWidgets.QDialogButtonBox.Ok).setEnabled( - False) - self.line_path.setText('None') - return - - self._path = pathlib.Path(value) - self.line_path.setText(str(self._path.resolve())) - if not self._path.exists(): - # Throws an OSError with windows network path - self.log.warning(PATH_ERR) - self.show_message(PATH_ERR, 'Path*', color='red') - self.btn_edit_cols.setEnabled(False) - else: - self._update() - self.btn_edit_cols.setEnabled(True) - - def accept(self) -> None: - if self.path is None: - self.show_message(PATH_ERR, 'Path*', color='red') - return - if self.flight is None: - self.show_error("Must select a valid flight to import data.") - return - - super().accept() - - def _edit(self): - """Launches the EditImportDialog to allow user to preview and - edit column name/position as necesarry. - - Notes - ----- - To simplify state handling & continuity (dialog should preserve options - and state through multiple uses), an EditImportView dialog is - initialized in the AdvancedImport constructor, to be reused through - the life of this dialog. - - Before re-launching the EIV dialog a call to set_state must be made - to update the data displayed within. - """ - if self.path is None: - return - - # self.editor.format = self.cb_format.currentData() - self.editor.data = self._sample - - if self.editor.exec_(): - # Change format combobox to match change in editor - idx = self.cb_format.findData(self.editor.format) - if idx != -1: - self.cb_format.setCurrentIndex(idx) - - self.show_message("Data Columns Updated", color='Green') - self.log.debug("Columns: {}".format(self.editor.columns)) - - def _update(self): - """Analyze path for statistical information/sample""" - st_size_mib = self.path.stat().st_size / 1048576 - self.field_fsize.setText("{:.3f} MiB".format(st_size_mib)) - - # Generate sample set of data for Column editor - sample = [] - with self.path.open(mode='r', newline='') as fd: - try: - has_header = csv.Sniffer().has_header(fd.read(8192)) - except csv.Error: - has_header = False - fd.seek(0) - - # Read in sample set - rdr = csv.reader(fd) - count = 0 - for i, line in enumerate(rdr): - count += 1 - if i <= self._preview_limit - 1: - sample.append(line) - - self.field_line_count.setText("{}".format(count)) - if has_header: - self.show_message("Autodetected Header in File", color='green') - self.editor.skiprow = True - - if not len(sample): - col_count = 0 - else: - col_count = len(sample[0]) - self.field_col_count.setText(str(col_count)) - - self._sample = sample - - # TODO: Determine if this is useful: takes a sample of first <_preview_limit> lines, and the last line - # in the file to display as a preview to the user when importing. - - # count = 0 - # sbuf = io.StringIO() - # with open(self.path) as fd: - # data = [fd.readline() for _ in range(self._preview_limit)] - # count += self._preview_limit - # - # last_line = None - # for line in fd: - # count += 1 - # last_line = line - # data.append(last_line) - # - # col_count = len(data[0].split(',')) - # - # sbuf.writelines(data) - # sbuf.seek(0) - - # Experimental - Read portion of data to get timestamps - # df = None - # if self._dtype == enums.DataTypes.GRAVITY: - # try: - # df = gi.read_at1a(sbuf) - # except: - # print("Error ingesting sample data") - # elif self._dtype == enums.DataTypes.TRAJECTORY: - # # TODO: Implement this - # pass - # # df = ti.import_trajectory(sbuf, ) - - def browse(self): - title = "Select {} Data File".format(self._dtype.capitalize()) - filt = "{typ} Data {ffilt}".format(typ=self._dtype.capitalize(), - ffilt=self._file_filter) - raw_path, _ = QtWidgets.QFileDialog.getOpenFileName( - parent=self, caption=title, directory=str(self._base_dir), - filter=filt, options=QtWidgets.QFileDialog.ReadOnly) - if raw_path: - self.path = raw_path - self._base_dir = self.path.parent - else: - return - - -class ChannelSelectionDialog(BaseDialog, - channel_select_dialog.Ui_ChannelSelection): - def __init__(self, parent=None): - super().__init__(msg_recvr=None, parent=parent) - self.setupUi(self) - - def set_model(self, model): - self.channel_treeview.setModel(model) - self.channel_treeview.expandAll() - - -class CreateProjectDialog(BaseDialog, project_dialog.Ui_Dialog): - def __init__(self, *args): - super().__init__(msg_recvr='label_msg', *args) - self.setupUi(self) - - self._project = None - - self.prj_browse.clicked.connect(self.select_dir) - desktop = pathlib.Path().home().joinpath('Desktop') - self.prj_dir.setText(str(desktop)) - - # Populate the type selection list - flt_icon = QIcon(':icons/airborne') - boat_icon = QIcon(':icons/marine') - dgs_airborne = QListWidgetItem(flt_icon, 'DGS Airborne', - self.prj_type_list) - dgs_airborne.setData(Qt.UserRole, enumerations.ProjectTypes.AIRBORNE) - self.prj_type_list.setCurrentItem(dgs_airborne) - dgs_marine = QListWidgetItem(boat_icon, 'DGS Marine', - self.prj_type_list) - dgs_marine.setData(Qt.UserRole, enumerations.ProjectTypes.MARINE) - - def accept(self): - """ - Called upon 'Create' button push, do some basic validation of fields - then accept() if required fields are filled, otherwise color the - labels red and display a warning message. - """ - - invld_fields = [] - for attr, label in self.__dict__.items(): - if not isinstance(label, QtWidgets.QLabel): - continue - text = str(label.text()) - if text.endswith('*'): - buddy = label.buddy() - if buddy and not buddy.text(): - label.setStyleSheet('color: red') - invld_fields.append(text) - elif buddy: - label.setStyleSheet('color: black') - - base_path = pathlib.Path(self.prj_dir.text()) - if not base_path.exists(): - self.show_message("Invalid Directory - Does not Exist", - buddy_label='label_dir') - return - - if invld_fields: - self.show_message('Verify that all fields are filled.') - return - - # TODO: Future implementation for Project types other than DGS AT1A - cdata = self.prj_type_list.currentItem().data(Qt.UserRole) - if cdata == enumerations.ProjectTypes.AIRBORNE: - name = str(self.prj_name.text()).rstrip() - path = pathlib.Path(self.prj_dir.text()).joinpath(name) - if not path.exists(): - path.mkdir(parents=True) - - self._project = AirborneProject(name=name, path=path, description="Not implemented yet in Create Dialog") - else: - self.show_message("Invalid Project Type (Not yet implemented)", - log=logging.WARNING, color='red') - return - - super().accept() - - def select_dir(self): - path = QtWidgets.QFileDialog.getExistingDirectory( - self, "Select Project Parent Directory") - if path: - self.prj_dir.setText(path) - - @property - def project(self): - return self._project - - class PropertiesDialog(BaseDialog): def __init__(self, cls, parent=None): super().__init__(parent=parent) diff --git a/dgp/gui/loader.py b/dgp/gui/loader.py deleted file mode 100644 index 58cb3e9..0000000 --- a/dgp/gui/loader.py +++ /dev/null @@ -1,123 +0,0 @@ -# coding: utf-8 - -import pathlib -import logging -import inspect - -from PyQt5.QtCore import pyqtSignal, QThread, pyqtBoundSignal -from pandas import DataFrame - -import dgp.lib.gravity_ingestor as gi -import dgp.lib.trajectory_ingestor as ti -from core.types.enumerations import DataTypes, GravityTypes - -_log = logging.getLogger(__name__) - - -def _not_implemented(*args, **kwargs): - """Temporary method, raises NotImplementedError for ingestor methods that - have not yet been defined.""" - raise NotImplementedError() - - -# TODO: Work needs to be done on ZLS as the data format is completely different -# ZLS data is stored in a directory with the filenames delimiting hours -GRAVITY_INGESTORS = { - GravityTypes.AT1A: gi.read_at1a, - GravityTypes.AT1M: _not_implemented, - GravityTypes.TAGS: _not_implemented, - GravityTypes.ZLS: _not_implemented -} - - -# TODO: I think this class should handle Loading only, and emit a DataFrame -# We're doing too many things here by having the loader thread also write the -# reuslt out. Use another method to generated the DataSource -class LoaderThread(QThread): - result = pyqtSignal(DataFrame) # type: pyqtBoundSignal - error = pyqtSignal(tuple) # type: pyqtBoundSignal - - def __init__(self, method, path, dtype=None, parent=None, **kwargs): - super().__init__(parent=parent) - self.log = logging.getLogger(__name__) - self._method = method - self._dtype = dtype - self._kwargs = kwargs - self.path = pathlib.Path(path) - - def run(self): - """Called on thread.start() - Exceptions must be caught within run, as they fall outside the - context of the start() method, and thus cannot be handled properly - outside of the thread execution context.""" - try: - df = self._method(self.path, **self._kwargs) - except Exception as e: - # self.error.emit((True, e)) - _log.exception("Error loading datafile: {} of type: {}".format( - self.path, self._dtype.name)) - self.error.emit((True, e)) - else: - self.result.emit(df) - self.error.emit((False, None)) - - @classmethod - def from_gravity(cls, parent, path, subtype=GravityTypes.AT1A, **kwargs): - """ - Convenience method to generate a gravity LoaderThread with appropriate - method based on gravity subtype. - - Parameters - ---------- - parent - path : pathlib.Path - subtype - kwargs - - Returns - ------- - - """ - # Inspect the subtype method and cull invalid parameters - method = GRAVITY_INGESTORS[subtype] - sig = inspect.signature(method) - kwds = {k: v for k, v in kwargs.items() if k in sig.parameters} - - if subtype == GravityTypes.ZLS: - # ZLS will inspect entire directory and parse file names - path = path.parent - - return cls(method=method, path=path, parent=parent, - dtype=DataTypes.GRAVITY, **kwds) - - @classmethod - def from_gps(cls, parent, path, subtype, **kwargs): - """ - - Parameters - ---------- - parent - path - subtype - kwargs - - Returns - ------- - - """ - return cls(method=ti.import_trajectory, path=path, parent=parent, - timeformat=subtype.name.lower(), dtype=DataTypes.TRAJECTORY, - **kwargs) - - -def get_loader(parent, path, dtype, subtype, on_complete, on_error, **kwargs): - if dtype == DataTypes.GRAVITY: - ld = LoaderThread.from_gravity(parent, path, subtype, **kwargs) - else: - ld = LoaderThread.from_gps(parent, path, subtype, **kwargs) - - if on_complete is not None and callable(on_complete): - ld.result.connect(on_complete) - if on_error is not None and callable(on_error): - ld.error.connect(on_error) - return ld diff --git a/dgp/gui/main.py b/dgp/gui/main.py index cbf3ee3..c69181c 100644 --- a/dgp/gui/main.py +++ b/dgp/gui/main.py @@ -11,14 +11,14 @@ from PyQt5.QtCore import pyqtSignal, pyqtBoundSignal from PyQt5.QtWidgets import QMainWindow, QProgressDialog, QFileDialog, QWidget -import core.types.enumerations as enums -from core.controllers.BaseProjectController import BaseProjectController -from core.controllers.FlightController import FlightController -from core.models.ProjectTreeModel import ProjectTreeModel -from core.models.project import AirborneProject +import dgp.core.types.enumerations as enums +from dgp.core.controllers.project_controllers import AirborneProjectController +from dgp.core.controllers.flight_controller import FlightController +from dgp.core.models.ProjectTreeModel import ProjectTreeModel +from dgp.core.models.project import AirborneProject from dgp.gui.utils import (ConsoleHandler, LOG_FORMAT, LOG_LEVEL_MAP, LOG_COLOR_MAP, get_project_file) -from dgp.gui.dialogs import AddFlightDialog, CreateProjectDialog +from dgp.gui.dialogs import CreateProjectDialog from dgp.gui.workspace import FlightTab from dgp.gui.ui.main_window import Ui_MainWindow @@ -45,7 +45,7 @@ class MainWindow(QMainWindow, Ui_MainWindow): status = pyqtSignal(str) # type: pyqtBoundSignal progress = pyqtSignal(int) # type: pyqtBoundSignal - def __init__(self, project: BaseProjectController, *args): + def __init__(self, project: AirborneProjectController, *args): super().__init__(*args) self.setupUi(self) @@ -95,43 +95,18 @@ def __init__(self, project: BaseProjectController, *args): # Issue #50 Flight Tabs # flight_tabs is a custom Qt Widget (dgp.gui.workspace) promoted within the .ui file - self._flight_tabs = self.flight_tabs # type: QtWidgets.QTabWidget + self.flight_tabs: QtWidgets.QTabWidget self._open_tabs = {} # Track opened tabs by {uid: tab_widget, ...} self._mutated = False - @property - def current_flight(self): - """Returns the active flight based on which Flight Tab is in focus.""" - if self._flight_tabs.count() > 0: - return self._flight_tabs.currentWidget().flight - return None - - @property - def current_tab(self) -> Union[FlightTab, None]: - """Get the active FlightTab (returns None if no Tabs are open)""" - if self._flight_tabs.count() > 0: - return self._flight_tabs.currentWidget() - return None - - def load(self): - """Called from splash screen to initialize and load main window. - This may be safely deprecated as we currently do not perform any long - running operations on initial load as we once did.""" - self._init_slots() - self.setWindowState(Qt.WindowMaximized) - self.save_project() - self.show() - try: - self.progress.disconnect() - self.status.disconnect() - except TypeError: - # This can be safely ignored (no slots were connected) - pass - def _init_slots(self): """Initialize PyQt Signals/Slots for UI Buttons and Menus""" + # Event Signals # + self.project_model.flight_changed.connect(self._flight_changed) + self.project_model.project_changed.connect(self._project_mutated) + # File Menu Actions # self.action_exit.triggered.connect(self.close) self.action_file_new.triggered.connect(self.new_project_dialog) @@ -143,26 +118,54 @@ def _init_slots(self): lambda: self.project.load_file(enums.DataTypes.TRAJECTORY, )) self.action_import_grav.triggered.connect( lambda: self.project.load_file(enums.DataTypes.GRAVITY, )) - self.action_add_flight.triggered.connect(self.add_flight_dialog) - - self.project_model.flight_changed.connect(self._flight_changed) - self.project_model.project_changed.connect(self._project_mutated) + self.action_add_flight.triggered.connect(self.project.add_flight) + self.action_add_meter.triggered.connect(self.project.add_gravimeter) # Project Control Buttons # - self.prj_add_flight.clicked.connect(self.add_flight_dialog) + self.prj_add_flight.clicked.connect(self.project.add_flight) + self.prj_add_meter.clicked.connect(self.project.add_gravimeter) self.prj_import_gps.clicked.connect( lambda: self.project.load_file(enums.DataTypes.TRAJECTORY, )) self.prj_import_grav.clicked.connect( lambda: self.project.load_file(enums.DataTypes.GRAVITY, )) # Tab Browser Actions # - self._flight_tabs.tabCloseRequested.connect(self._tab_closed) - self._flight_tabs.currentChanged.connect(self._tab_changed) + self.flight_tabs.tabCloseRequested.connect(self._tab_closed) + self.flight_tabs.currentChanged.connect(self._tab_changed) # Console Window Actions # self.combo_console_verbosity.currentIndexChanged[str].connect( self.set_logging_level) + @property + def current_flight(self): + """Returns the active flight based on which Flight Tab is in focus.""" + if self.flight_tabs.count() > 0: + return self.flight_tabs.currentWidget().flight + return None + + @property + def current_tab(self) -> Union[FlightTab, None]: + """Get the active FlightTab (returns None if no Tabs are open)""" + if self.flight_tabs.count() > 0: + return self.flight_tabs.currentWidget() + return None + + def load(self): + """Called from splash screen to initialize and load main window. + This may be safely deprecated as we currently do not perform any long + running operations on initial load as we once did.""" + self._init_slots() + self.setWindowState(Qt.WindowMaximized) + self.save_project() + self.show() + try: + self.progress.disconnect() + self.status.disconnect() + except TypeError: + # This can be safely ignored (no slots were connected) + pass + def closeEvent(self, *args, **kwargs): self.log.info("Saving project and closing.") self.save_project() @@ -194,12 +197,12 @@ def add_tab(self, tab: QWidget): @pyqtSlot(FlightController, name='_flight_changed') def _flight_changed(self, flight: FlightController): if flight.uid in self._open_tabs: - self._flight_tabs.setCurrentWidget(self._open_tabs[flight.uid]) + self.flight_tabs.setCurrentWidget(self._open_tabs[flight.uid]) else: flt_tab = FlightTab(flight) self._open_tabs[flight.uid] = flt_tab - idx = self._flight_tabs.addTab(flt_tab, flight.name) - self._flight_tabs.setCurrentIndex(idx) + idx = self.flight_tabs.addTab(flt_tab, flight.name) + self.flight_tabs.setCurrentIndex(idx) @pyqtSlot(name='_project_mutated') def _project_mutated(self): @@ -210,18 +213,19 @@ def _project_mutated(self): @pyqtSlot(int, name='_tab_changed') def _tab_changed(self, index: int): self.log.debug("Tab index changed to %d", index) - current = self._flight_tabs.currentWidget() + current = self.flight_tabs.currentWidget() if current is not None: fc = current.flight # type: FlightController - self.project.set_active(fc, emit=False) + self.project.set_active_child(fc, emit=False) else: self.log.debug("No flight tab open") @pyqtSlot(int, name='_tab_closed') def _tab_closed(self, index: int): - # TODO: Should we delete the tab, or pop it off the stack to a cache? - self.log.warning("Tab close requested for tab: {}".format(index)) - self._flight_tabs.removeTab(index) + self.log.debug("Tab close requested for tab: {}".format(index)) + tab = self.flight_tabs.widget(index) # type: FlightTab + del self._open_tabs[tab.uid] + self.flight_tabs.removeTab(index) def show_progress_dialog(self, title, start=0, stop=1, label=None, cancel="Cancel", modal=False, @@ -252,61 +256,6 @@ def show_progress_status(self, start, stop, label=None) -> QtWidgets.QProgressBa sb.addWidget(progress) return progress - # def _add_data(self, data, dtype: enums.DataTypes, flight: prj.Flight, path): - # uid = dm.get_datastore().save_data(data, flight.uid, dtype.value) - # if uid is None: - # self.log.error("Error occured writing DataFrame to HDF5 _store.") - # return - # - # cols = list(data.keys()) - # ds = types.DataSource(uid, path, cols, dtype, x0=data.index.min(), - # x1=data.index.max()) - # flight.register_data(ds) - # return ds - - # def load_file(self, dtype, flight, **params): - # def _on_complete(data): - # self.add_data(data, dtype, flight, params.get('path', None)) - # - # # align and crop gravity and trajectory frames if both are present - # gravity = flight.get_source(enums.DataTypes.GRAVITY) - # trajectory = flight.get_source(enums.DataTypes.TRAJECTORY) - # if gravity is not None and trajectory is not None: - # # align and crop the gravity and trajectory frames - # fields = DGS_AT1A_INTERP_FIELDS | TRAJECTORY_INTERP_FIELDS - # new_gravity, new_trajectory = align_frames(gravity.load(), - # trajectory.load(), - # interp_only=fields) - # - # # TODO: Fix this mess - # # replace datasource objects - # ds_attr = {'path': gravity.filename, 'dtype': gravity.dtype} - # flight.remove_data(gravity) - # self._add_data(new_gravity, ds_attr['dtype'], flight, - # ds_attr['path']) - # - # ds_attr = {'path': trajectory.filename, - # 'dtype': trajectory.dtype} - # flight.remove_data(trajectory) - # self._add_data(new_trajectory, ds_attr['dtype'], flight, - # ds_attr['path']) - # - # def _result(result): - # err, exc = result - # prog.close() - # if err: - # msg = "Error loading {typ}::{fname}".format( - # typ=dtype.name.capitalize(), fname=params.get('path', '')) - # self.log.error(msg) - # else: - # msg = "Loaded {typ}::{fname}".format( - # typ=dtype.name.capitalize(), fname=params.get('path', '')) - # self.log.info(msg) - # - # ld = loader.get_loader(parent=self, dtype=dtype, on_complete=_on_complete, - # on_error=_result, **params) - # ld.start() - def save_project(self) -> None: if self.project is None: return @@ -320,27 +269,6 @@ def save_project(self) -> None: # Project dialog functions ################################################ - # def import_data_dialog(self, dtype=None) -> None: - # """ - # Launch a dialog window for user to specify path and parameters to - # load a file of dtype. - # Params gathered by dialog will be passed to :py:meth: self.load_file - # which constructs the loading thread and performs the import. - # - # Parameters - # ---------- - # dtype : enumerations.DataTypes - # Data type for which to launch dialog: GRAVITY or TRAJECTORY - # - # """ - # dialog = AdvancedImportDialog(self.project, self.current_flight, - # data_type=dtype, parent=self) - # dialog.browse() - # if dialog.exec_(): - # # TODO: Should path be contained within params or should we take - # # it as its own parameter - # self.load_file(dtype, dialog.flight, **dialog.params) - def new_project_dialog(self) -> QMainWindow: new_window = True dialog = CreateProjectDialog() @@ -373,23 +301,3 @@ def open_project_dialog(self) -> None: self.project = AirborneProject.from_json(fd.read()) self.update_project() return - - @autosave - def add_flight_dialog(self) -> None: - # TODO: Move this into ProjectController as flights are the purview of the project - dialog = AddFlightDialog(self.project) - if dialog.exec_(): - flight = dialog.flight - self.log.info("Adding flight {}".format(flight.name)) - fc = self.project.add_child(flight) # type: FlightController - self.project.set_active(fc) - - # TODO: Need to re-implement this for new data import method - # OR - remove the option to add data during flight creation - # if dialog.gravity: - # self.import_data(dialog.gravity, 'gravity', flight) - # if dialog.gps: - # self.import_data(dialog.gps, 'gps', flight) - return - self.log.info("New flight creation aborted.") - return diff --git a/dgp/gui/plotting/plotters.py b/dgp/gui/plotting/plotters.py index 4affbb7..92fdc13 100644 --- a/dgp/gui/plotting/plotters.py +++ b/dgp/gui/plotting/plotters.py @@ -53,74 +53,6 @@ def __getattr__(self, item): raise AttributeError("Plot Widget has no Attribute: ", item) -class LinearFlightRegion(LinearRegionItem): - """Custom LinearRegionItem class to provide override methods on various - click events.""" - - def __init__(self, values=(0, 1), orientation=None, brush=None, - movable=True, bounds=None, parent=None, label=None): - super().__init__(values=values, orientation=orientation, brush=brush, - movable=movable, bounds=bounds) - - self.parent = parent - self._grpid = None - self._label_text = label or '' - self.label = TextItem(text=self._label_text, color=(0, 0, 0), - anchor=(0, 0)) - # self.label.setPos() - self._menu = QMenu() - self._menu.addAction(QAction('Remove', self, triggered=self._remove)) - self._menu.addAction(QAction('Set Label', self, - triggered=self._getlabel)) - self.sigRegionChanged.connect(self._move_label) - - def mouseClickEvent(self, ev): - if not self.parent.selection_mode: - return - if ev.button() == QtCore.Qt.RightButton and not self.moving: - ev.accept() - pos = ev.screenPos().toPoint() - pop_point = QtCore.QPoint(pos.x(), pos.y()) - self._menu.popup(pop_point) - return True - else: - return super().mouseClickEvent(ev) - - def _move_label(self, lfr): - x0, x1 = self.getRegion() - - self.label.setPos(x0, 0) - - def _remove(self): - try: - self.parent.remove(self) - except AttributeError: - return - - def _getlabel(self): - text, result = QtWidgets.QInputDialog.getText(None, - "Enter Label", - "Line Label:", - text=self._label_text) - if not result: - return - try: - self.parent.set_label(self, str(text).strip()) - except AttributeError: - return - - def set_label(self, text): - self.label.setText(text) - - @property - def group(self): - return self._grpid - - @group.setter - def group(self, value): - self._grpid = value - - class PqtLineSelectPlot(QtCore.QObject): """New prototype Flight Line selection plot using Pyqtgraph as the backend. @@ -129,14 +61,10 @@ class PqtLineSelectPlot(QtCore.QObject): """ line_changed = pyqtSignal(LineUpdate) - def __init__(self, flight, rows=3, parent=None): + def __init__(self, rows=3, parent=None): super().__init__(parent=parent) - # self.widget = BasePlot(backend=PYQTGRAPH, rows=rows, cols=1, - # sharex=True, grid=True, background='w', - # parent=parent) self.widget = PyQtGridPlotWidget(rows=rows, cols=1, grid=True, sharex=True, background='w', parent=parent) - self._flight = flight self.widget.add_onclick_handler(self.onclick) self._lri_id = count(start=1) self._selections = {} # Flight-line 'selection' patches: grpid: group[LinearFlightRegion's] diff --git a/dgp/gui/splash.py b/dgp/gui/splash.py index 53d86df..d6be53b 100644 --- a/dgp/gui/splash.py +++ b/dgp/gui/splash.py @@ -11,7 +11,7 @@ import PyQt5.QtCore as QtCore from PyQt5.uic import loadUiType -from core.controllers.ProjectController import AirborneProjectController +from core.controllers.project_controllers import AirborneProjectController from core.models.project import AirborneProject, GravityProject from dgp.gui.main import MainWindow from dgp.gui.utils import ConsoleHandler, LOG_FORMAT, LOG_COLOR_MAP, get_project_file diff --git a/dgp/gui/workspace.py b/dgp/gui/workspace.py index 20a0b00..2853641 100644 --- a/dgp/gui/workspace.py +++ b/dgp/gui/workspace.py @@ -8,14 +8,15 @@ import PyQt5.QtWidgets as QtWidgets import PyQt5.QtGui as QtGui -from core.controllers.FlightController import FlightController +from core.controllers.flight_controller import FlightController +from dgp.core.oid import OID from .workspaces import * class FlightTab(QWidget): """Top Level Tab created for each Flight object open in the workspace""" - def __init__(self, flight, parent=None, flags=0, **kwargs): + def __init__(self, flight: FlightController, parent=None, flags=0, **kwargs): super().__init__(parent=parent, flags=Qt.Widget) self.log = logging.getLogger(__name__) self._flight = flight @@ -42,14 +43,10 @@ def __init__(self, flight, parent=None, flags=0, **kwargs): def subtab_widget(self): return self._workspace.currentWidget().widget() - def new_data(self, dsrc): - for tab in [self._plot_tab, self._transform_tab]: - tab.data_modified('add', dsrc) - - def data_deleted(self, dsrc): - self.log.debug("Notifying tabs of data-source deletion.") - for tab in [self._plot_tab]: - tab.data_modified('remove', dsrc) + @property + def uid(self) -> OID: + """Return the underlying Flight's UID""" + return self._flight.uid @property def flight(self) -> FlightController: diff --git a/dgp/gui/workspaces/PlotTab.py b/dgp/gui/workspaces/PlotTab.py index b8f592c..b89cf19 100644 --- a/dgp/gui/workspaces/PlotTab.py +++ b/dgp/gui/workspaces/PlotTab.py @@ -9,7 +9,7 @@ import dgp.gui.models as models import dgp.lib.types as types from . import BaseTab -from core.controllers.FlightController import FlightController +from core.controllers.flight_controller import FlightController from dgp.gui.dialogs import ChannelSelectionDialog from dgp.gui.plotting.plotters import LineUpdate, PqtLineSelectPlot diff --git a/dgp/gui/workspaces/TransformTab.py b/dgp/gui/workspaces/TransformTab.py index b27b45f..4f6effe 100644 --- a/dgp/gui/workspaces/TransformTab.py +++ b/dgp/gui/workspaces/TransformTab.py @@ -6,7 +6,7 @@ from PyQt5.QtGui import QStandardItemModel, QStandardItem from PyQt5.QtWidgets import QVBoxLayout, QWidget, QComboBox -from core.controllers.FlightController import FlightController +from core.controllers.flight_controller import FlightController from dgp.lib.transform.transform_graphs import SyncGravity, AirbornePost, TransformGraph from dgp.gui.plotting.plotters import TransformPlot from . import BaseTab @@ -23,19 +23,17 @@ def __init__(self, flight: FlightController): self._current_dataset = None # Initialize Models for ComboBoxes - # TODO: Ideally the model will come directly from the Flight object - which will simplify updating of state - self.flight_lines = QStandardItemModel() - # self.flight_lines = self._flight._line_model self.plot_index = QStandardItemModel() self.transform_graphs = QStandardItemModel() # Set ComboBox Models - self.cb_flight_lines.setModel(self.flight_lines) + self.cb_flight_lines.setModel(self._flight.lines_model) self.cb_plot_index.setModel(self.plot_index) self.cb_plot_index.currentIndexChanged[int].connect(lambda idx: print("Index changed to %d" % idx)) self.cb_transform_graphs.setModel(self.transform_graphs) # Initialize model for channels + # TODO: This model should be of the transformed dataset not the flight data_model self.channels = QStandardItemModel() self.channels.itemChanged.connect(self._update_channel_selection) self.lv_channels.setModel(self.channels) @@ -56,7 +54,6 @@ def __init__(self, flight: FlightController): self.transform_graphs.appendRow(item) self.bt_execute_transform.clicked.connect(self.execute_transform) - self.bt_line_refresh.clicked.connect(self._set_flight_lines) self.bt_select_all.clicked.connect(lambda: self._set_all_channels(Qt.Checked)) self.bt_select_none.clicked.connect(lambda: self._set_all_channels(Qt.Unchecked)) @@ -78,16 +75,6 @@ def transform(self) -> QComboBox: def plot(self) -> TransformPlot: return self._plot - def _set_flight_lines(self): - self.flight_lines.clear() - line_all = QStandardItem("All") - line_all.setData('all', role=Qt.UserRole) - self.flight_lines.appendRow(line_all) - for line in self._flight.lines: - item = QStandardItem(str(line)) - item.setData(line, Qt.UserRole) - self.flight_lines.appendRow(item) - def _set_all_channels(self, state=Qt.Checked): for i in range(self.channels.rowCount()): self.channels.item(i).setCheckState(state) diff --git a/dgp/lib/transform/display.py b/dgp/lib/transform/display.py deleted file mode 100644 index 1d5288a..0000000 --- a/dgp/lib/transform/display.py +++ /dev/null @@ -1,108 +0,0 @@ -# coding: utf-8 - -from itertools import cycle -from typing import Dict - -import PyQt5.QtGui as QtGui -from pandas import Series, DataFrame, to_numeric -from matplotlib.axes import Axes -from pyqtgraph.flowchart import Node, Terminal -from pyqtgraph.flowchart.library.Display import PlotWidgetNode - -from ...gui.plotting.backends import AbstractSeriesPlotter - -"""Containing display Nodes to translate between pyqtgraph Flowchart and an -MPL plot""" - -__displayed__ = False - - -class MPLPlotNode(Node): - nodeName = 'MPLPlotNode' - - def __init__(self, name): - terminals = {'In': dict(io='in', multi=True)} - super().__init__(name=name, terminals=terminals) - self.plot = None - self.canvas = None - - def set_plot(self, plot: Axes, canvas=None): - self.plot = plot - self.canvas = canvas - - def disconnected(self, localTerm, remoteTerm): - """Called when connection is removed""" - print("local/remote term type:") - print(type(localTerm)) - print(type(remoteTerm)) - if localTerm is self['In']: - pass - - def process(self, In: Dict, display=True) -> None: - if display and self.plot is not None: - # term is the Terminal from which the data originates - for term, series in In.items(): # type: Terminal, Series - if series is None: - continue - - if not isinstance(series, Series): - print("Incompatible data input") - continue - - self.plot.plot(series.index, series.values) - if self.canvas is not None: - self.canvas.draw() - - -class PGPlotNode(Node): - nodeName = 'PGPlotNode' - - def __init__(self, name): - super().__init__(name, terminals={'In': dict(io='in', multi=True)}) - self.color_cycle = cycle([dict(color=(255, 193, 9)), - dict(color=(232, 102, 12)), - dict(color=(183, 12, 232))]) - self.plot = None # type: AbstractSeriesPlotter - self.items = {} # SourceTerm: PlotItem - - def setPlot(self, plot): - self.plot = plot - - def disconnected(self, localTerm, remoteTerm): - if localTerm is self['In'] and remoteTerm in self.items: - self.plot.removeItem(self.items[remoteTerm]) - del self.items[remoteTerm] - - def process(self, In, display=True): - if display and self.plot is not None: - items = set() - # Add all new input items to selected plot - for name, series in In.items(): - if series is None: - continue - - # TODO: Add UI Combobox to select channel if input is a DF? - # But what about multiple inputs? - assert isinstance(series, Series) - - uid = id(series) - if uid in self.items and self.items[uid].scene() is self.plot.scene(): - # Item is already added to the correct scene - items.add(uid) - else: - item = self.plot.add_series(series) - self.items[uid] = item - items.add(uid) - - # Remove any left-over items that did not appear in the input - for uid in list(self.items.keys()): - if uid not in items: - self.plot.remove_series(uid) - del self.items[uid] - - def ctrlWidget(self): - return None - - def updateUi(self): - pass - diff --git a/tests/test_dialogs.py b/tests/test_dialogs.py index 0ce48bc..4b72dca 100644 --- a/tests/test_dialogs.py +++ b/tests/test_dialogs.py @@ -10,7 +10,6 @@ import PyQt5.QtTest as QtTest import dgp.gui.dialogs as dlg -import dgp.lib.project as prj import core.types.enumerations as enums @@ -34,58 +33,58 @@ def test_properties_dialog(self): Qt.LeftButton) self.assertEqual(1, len(spy)) - def test_advanced_import_dialog_gravity(self): - t_dlg = dlg.AdvancedImportDialog(self.m_prj, self.m_flight, - enums.DataTypes.GRAVITY) - self.assertEqual(self.m_flight, t_dlg.flight) - self.assertIsNone(t_dlg.path) - - t_dlg.cb_format.setCurrentIndex(0) - editor = t_dlg.editor - - # Test format property setter, and reflection in editor format - for fmt in enums.GravityTypes: - self.assertNotEqual(-1, t_dlg.cb_format.findData(fmt)) - t_dlg.format = fmt - self.assertEqual(t_dlg.format, editor.format) - - t_dlg.path = self.m_grav_path - self.assertEqual(self.m_grav_path, t_dlg.path) - self.assertEqual(list(t_dlg.cb_format.currentData().value), - editor.columns) - - # Set formatter back to type AT1A for param testing - t_dlg.format = enums.GravityTypes.AT1A - self.assertEqual(t_dlg.format, enums.GravityTypes.AT1A) - - # Test behavior of skiprow property - # Should return None if unchecked, and 1 if checked - self.assertIsNone(editor.skiprow) - editor.skiprow = True - self.assertEqual(1, editor.skiprow) - - # Test generation of params property on dialog accept() - t_dlg.accept() - result_params = dict(path=self.m_grav_path, - columns=list(enums.GravityTypes.AT1A.value), - skiprows=1, - subtype=enums.GravityTypes.AT1A) - self.assertEqual(result_params, t_dlg.params) - self.assertEqual(self.m_flight, t_dlg.flight) - - def test_advanced_import_dialog_trajectory(self): - t_dlg = dlg.AdvancedImportDialog(self.m_prj, self.m_flight, - enums.DataTypes.TRAJECTORY) - - # Test all GPSFields represented, and setting via format property - for fmt in enums.GPSFields: - self.assertNotEqual(-1, t_dlg.cb_format.findData(fmt)) - t_dlg.format = fmt - self.assertEqual(fmt, t_dlg.format) - col_fmt = t_dlg.params['subtype'] - self.assertEqual(fmt, col_fmt) - t_dlg.format = enums.GPSFields.hms - - # Verify expected output, ordered correctly - hms_expected = ['mdy', 'hms', 'lat', 'long', 'ell_ht'] - self.assertEqual(hms_expected, t_dlg.params['columns']) + # def test_advanced_import_dialog_gravity(self): + # t_dlg = dlg.AdvancedImportDialog(self.m_prj, self.m_flight, + # enums.DataTypes.GRAVITY) + # self.assertEqual(self.m_flight, t_dlg.flight) + # self.assertIsNone(t_dlg.path) + # + # t_dlg.cb_format.setCurrentIndex(0) + # editor = t_dlg.editor + # + # # Test format property setter, and reflection in editor format + # for fmt in enums.GravityTypes: + # self.assertNotEqual(-1, t_dlg.cb_format.findData(fmt)) + # t_dlg.format = fmt + # self.assertEqual(t_dlg.format, editor.format) + # + # t_dlg.path = self.m_grav_path + # self.assertEqual(self.m_grav_path, t_dlg.path) + # self.assertEqual(list(t_dlg.cb_format.currentData().value), + # editor.columns) + # + # # Set formatter back to type AT1A for param testing + # t_dlg.format = enums.GravityTypes.AT1A + # self.assertEqual(t_dlg.format, enums.GravityTypes.AT1A) + # + # # Test behavior of skiprow property + # # Should return None if unchecked, and 1 if checked + # self.assertIsNone(editor.skiprow) + # editor.skiprow = True + # self.assertEqual(1, editor.skiprow) + # + # # Test generation of params property on dialog accept() + # t_dlg.accept() + # result_params = dict(path=self.m_grav_path, + # columns=list(enums.GravityTypes.AT1A.value), + # skiprows=1, + # subtype=enums.GravityTypes.AT1A) + # self.assertEqual(result_params, t_dlg.params) + # self.assertEqual(self.m_flight, t_dlg.flight) + + # def test_advanced_import_dialog_trajectory(self): + # t_dlg = dlg.AdvancedImportDialog(self.m_prj, self.m_flight, + # enums.DataTypes.TRAJECTORY) + # + # # Test all GPSFields represented, and setting via format property + # for fmt in enums.GPSFields: + # self.assertNotEqual(-1, t_dlg.cb_format.findData(fmt)) + # t_dlg.format = fmt + # self.assertEqual(fmt, t_dlg.format) + # col_fmt = t_dlg.params['subtype'] + # self.assertEqual(fmt, col_fmt) + # t_dlg.format = enums.GPSFields.hms + # + # # Verify expected output, ordered correctly + # hms_expected = ['mdy', 'hms', 'lat', 'long', 'ell_ht'] + # self.assertEqual(hms_expected, t_dlg.params['columns']) diff --git a/tests/test_loader.py b/tests/test_loader.py index 10e941f..6535fd0 100644 --- a/tests/test_loader.py +++ b/tests/test_loader.py @@ -1,79 +1,3 @@ -# coding: utf-8 +# -*- coding: utf-8 -*- -import logging -import unittest -from pathlib import Path - -import PyQt5.QtWidgets as QtWidgets -from pandas import DataFrame - -import dgp.gui.loader as loader -import core.types.enumerations as enums -import dgp.lib.gravity_ingestor as gi -import dgp.lib.trajectory_ingestor as ti - - -class TestLoader(unittest.TestCase): - """Test the Threaded file loader class in dgp.gui.loader""" - - def setUp(self): - self.app = QtWidgets.QApplication([]) - self.grav_path = Path('tests/sample_gravity.csv') - self.gps_path = Path('tests/sample_trajectory.txt') - self._result = {} - # Disable logging output expected from thread testing (cannot be caught) - logging.disable(logging.CRITICAL) - - def tearDown(self): - logging.disable(logging.NOTSET) - - def sig_emitted(self, key, value): - self._result[key] = value - - def test_load_gravity(self): - grav_df = gi.read_at1a(str(self.grav_path)) - self.assertEqual((10, 26), grav_df.shape) - - ld = loader.LoaderThread( - loader.GRAVITY_INGESTORS[loader.GravityTypes.AT1A], self.grav_path, - loader.DataTypes.GRAVITY) - ld.error.connect(lambda x: self.sig_emitted('err', x)) - ld.result.connect(lambda x: self.sig_emitted('data', x)) - ld.start() - ld.wait() - - # Process signal events - self.app.processEvents() - - self.assertFalse(self._result['err'][0]) - self.assertIsInstance(self._result['data'], DataFrame) - - self.assertTrue(grav_df.equals(self._result['data'])) - - # Test Error Handling (pass GPS data to cause a ValueError) - ld_err = loader.LoaderThread.from_gravity(None, self.gps_path) - ld_err.error.connect(lambda x: self.sig_emitted('err2', x)) - ld_err.start() - ld_err.wait() - self.app.processEvents() - - err, exc = self._result['err2'] - self.assertTrue(err) - self.assertIsInstance(exc, ValueError) - - def test_load_trajectory(self): - cols = ['mdy', 'hms', 'lat', 'long', 'ell_ht', 'ortho_ht', 'num_sats', - 'pdop'] - gps_df = ti.import_trajectory(self.gps_path, columns=cols, - skiprows=1, timeformat='hms') - - ld = loader.LoaderThread.from_gps(None, self.gps_path, - enums.GPSFields.hms, columns=cols, - skiprows=1) - ld.error.connect(lambda x: self.sig_emitted('gps_err', x)) - ld.result.connect(lambda x: self.sig_emitted('gps_data', x)) - ld.start() - ld.wait() - self.app.processEvents() - - self.assertTrue(gps_df.equals(self._result['gps_data'])) +# TODO: Tests for new file loader method in core/controllers/project_controller::FileLoader From 63f34faf1e9b8ec17453eaed468c95981da270b6 Mon Sep 17 00:00:00 2001 From: Zachery Brady Date: Sun, 1 Jul 2018 18:38:15 -0600 Subject: [PATCH 120/236] Refactoring and functionality improvements to UI Dialogs --- dgp/gui/dialog/add_flight_dialog.py | 24 +- dgp/gui/dialog/add_gravimeter_dialog.py | 2 +- dgp/gui/dialog/create_project_dialog.py | 90 +++++ dgp/gui/dialog/data_import_dialog.py | 173 ++++++--- dgp/gui/main.py | 2 +- dgp/gui/plotting/backends.py | 410 +++------------------- dgp/gui/plotting/helpers.py | 170 +++++++++ dgp/gui/plotting/plotters.py | 33 +- dgp/gui/splash.py | 6 +- dgp/gui/ui/add_flight_dialog.ui | 60 ++-- dgp/gui/ui/add_meter_dialog.ui | 35 +- dgp/gui/ui/create_project_dialog.ui | 447 ++++++++++++++++++++++++ dgp/gui/ui/data_import_dialog.ui | 249 ++++++++++--- dgp/gui/workspaces/PlotTab.py | 168 +++++---- dgp/lib/types.py | 2 +- 15 files changed, 1281 insertions(+), 590 deletions(-) create mode 100644 dgp/gui/dialog/create_project_dialog.py create mode 100644 dgp/gui/plotting/helpers.py create mode 100644 dgp/gui/ui/create_project_dialog.ui diff --git a/dgp/gui/dialog/add_flight_dialog.py b/dgp/gui/dialog/add_flight_dialog.py index 825444a..53b36ec 100644 --- a/dgp/gui/dialog/add_flight_dialog.py +++ b/dgp/gui/dialog/add_flight_dialog.py @@ -5,6 +5,7 @@ from PyQt5.QtCore import Qt, QDate from PyQt5.QtWidgets import QDialog, QWidget +from dgp.core.models.meter import Gravimeter from dgp.core.controllers.controller_interfaces import IAirborneController, IFlightController from dgp.core.models.flight import Flight from ..ui.add_flight_dialog import Ui_NewFlight @@ -16,11 +17,13 @@ def __init__(self, project: IAirborneController, flight: IFlightController = Non super().__init__(parent) self.setupUi(self) self._project = project + self._fctrl = flight self.cb_gravimeters.setModel(project.meter_model) self.qde_flight_date.setDate(datetime.today()) + self.qsb_sequence.setValue(project.flight_model.rowCount()) - self._flight = flight + self.qpb_add_sensor.clicked.connect(self._project.add_gravimeter) def accept(self): name = self.qle_flight_name.text() @@ -30,19 +33,22 @@ def accept(self): sequence = self.qsb_sequence.value() duration = self.qsb_duration.value() - meter = self.cb_gravimeters.currentData(role=Qt.UserRole) + meter = self.cb_gravimeters.currentData(role=Qt.UserRole) # type: Gravimeter + # TODO: Add meter association to flight # how to make a reference that can be retrieved after loading from JSON? - if self._flight is not None: + if self._fctrl is not None: # Existing flight - update - self._flight.set_attr('name', name) - self._flight.set_attr('date', date) - self._flight.set_attr('notes', notes) - self._flight.set_attr('sequence', sequence) - self._flight.set_attr('duration', duration) + self._fctrl.set_attr('name', name) + self._fctrl.set_attr('date', date) + self._fctrl.set_attr('notes', notes) + self._fctrl.set_attr('sequence', sequence) + self._fctrl.set_attr('duration', duration) + self._fctrl.add_child(meter) else: - flt = Flight(self.qle_flight_name.text(), date=date, notes=self.qte_notes.toPlainText(), + flt = Flight(self.qle_flight_name.text(), date=date, + notes=self.qte_notes.toPlainText(), sequence=sequence, duration=duration) self._project.add_child(flt) diff --git a/dgp/gui/dialog/add_gravimeter_dialog.py b/dgp/gui/dialog/add_gravimeter_dialog.py index b189cdb..d0fbd91 100644 --- a/dgp/gui/dialog/add_gravimeter_dialog.py +++ b/dgp/gui/dialog/add_gravimeter_dialog.py @@ -26,8 +26,8 @@ def __init__(self, project: IAirborneController, parent: Optional[QWidget] = Non self.qlw_metertype.addItem("TAGS") self.qlw_metertype.addItem("ZLS") self.qlw_metertype.addItem("AirSeaII") - self.qlw_metertype.setCurrentRow(0) self.qlw_metertype.currentRowChanged.connect(self._type_changed) + self.qlw_metertype.setCurrentRow(0) self.qtb_browse_config.clicked.connect(self._browse_config) self.qle_serial.textChanged.connect(lambda text: self._serial_changed(text)) diff --git a/dgp/gui/dialog/create_project_dialog.py b/dgp/gui/dialog/create_project_dialog.py new file mode 100644 index 0000000..5f2768a --- /dev/null +++ b/dgp/gui/dialog/create_project_dialog.py @@ -0,0 +1,90 @@ +# -*- coding: utf-8 -*- +import logging +from pathlib import Path + +from PyQt5.QtCore import Qt +from PyQt5.QtGui import QIcon +from PyQt5.QtWidgets import QDialog, QListWidgetItem, QLabel, QFileDialog + +from dgp.core.models.project import AirborneProject +from dgp.core.types.enumerations import ProjectTypes +from dgp.gui.ui.create_project_dialog import Ui_CreateProjectDialog + + +class CreateProjectDialog(QDialog, Ui_CreateProjectDialog): + def __init__(self): + super().__init__() + self.setupUi(self) + + self._project = None + + self.prj_browse.clicked.connect(self.select_dir) + desktop = Path().home().joinpath('Desktop') + self.prj_dir.setText(str(desktop)) + + # Populate the type selection list + flt_icon = QIcon(':icons/airborne') + boat_icon = QIcon(':icons/marine') + dgs_airborne = QListWidgetItem(flt_icon, 'DGS Airborne', + self.prj_type_list) + dgs_airborne.setData(Qt.UserRole, ProjectTypes.AIRBORNE) + self.prj_type_list.setCurrentItem(dgs_airborne) + dgs_marine = QListWidgetItem(boat_icon, 'DGS Marine', + self.prj_type_list) + dgs_marine.setData(Qt.UserRole, ProjectTypes.MARINE) + + def accept(self): + """ + Called upon 'Create' button push, do some basic validation of fields + then accept() if required fields are filled, otherwise color the + labels red and display a warning message. + """ + + invld_fields = [] + for attr, label in self.__dict__.items(): + if not isinstance(label, QLabel): + continue + text = str(label.text()) + if text.endswith('*'): + buddy = label.buddy() + if buddy and not buddy.text(): + label.setStyleSheet('color: red') + invld_fields.append(text) + elif buddy: + label.setStyleSheet('color: black') + + base_path = Path(self.prj_dir.text()) + if not base_path.exists(): + self.show_message("Invalid Directory - Does not Exist", + buddy_label='label_dir') + return + + if invld_fields: + self.show_message('Verify that all fields are filled.') + return + + # TODO: Future implementation for Project types other than DGS AT1A + cdata = self.prj_type_list.currentItem().data(Qt.UserRole) + if cdata == ProjectTypes.AIRBORNE: + name = str(self.prj_name.text()).rstrip() + path = Path(self.prj_dir.text()).joinpath(name) + if not path.exists(): + path.mkdir(parents=True) + + self._project = AirborneProject(name=name, path=path, description="Not implemented yet in Create Dialog") + else: + self.show_message("Invalid Project Type (Not yet implemented)", + log=logging.WARNING, color='red') + return + + super().accept() + + def select_dir(self): + path = QFileDialog.getExistingDirectory( + self, "Select Project Parent Directory") + if path: + self.prj_dir.setText(path) + + @property + def project(self): + return self._project diff --git a/dgp/gui/dialog/data_import_dialog.py b/dgp/gui/dialog/data_import_dialog.py index b61f509..4a6b4e6 100644 --- a/dgp/gui/dialog/data_import_dialog.py +++ b/dgp/gui/dialog/data_import_dialog.py @@ -1,84 +1,129 @@ # -*- coding: utf-8 -*- +import csv import logging +import shutil from datetime import datetime from pathlib import Path -from typing import Union +from typing import Union, Optional from PyQt5.QtCore import Qt, pyqtSlot, pyqtSignal, QDate -from PyQt5.QtGui import QStandardItemModel -from PyQt5.QtWidgets import QDialog, QFileDialog, QListWidgetItem, QCalendarWidget +from PyQt5.QtGui import QStandardItemModel, QStandardItem, QIcon +from PyQt5.QtWidgets import QDialog, QFileDialog, QListWidgetItem, QCalendarWidget, QWidget import dgp.core.controllers.gravimeter_controller as mtr -from dgp.core.controllers.controller_interfaces import IAirborneController -from dgp.core.controllers.flight_controller import FlightController -from dgp.gui.ui.data_import_dialog import Ui_DataImportDialog +from dgp.core.controllers.controller_interfaces import IAirborneController, IFlightController from dgp.core.models.data import DataFile from dgp.core.types.enumerations import DataTypes +from dgp.gui.ui.data_import_dialog import Ui_DataImportDialog class DataImportDialog(QDialog, Ui_DataImportDialog): - load = pyqtSignal(DataFile) + load = pyqtSignal(DataFile, dict) - def __init__(self, controller: IAirborneController, datatype: DataTypes, base_path: str = None, parent=None): + def __init__(self, project: IAirborneController, + datatype: DataTypes, base_path: str = None, + parent: Optional[QWidget] = None): super().__init__(parent=parent) self.setupUi(self) self.log = logging.getLogger(__name__) - self._controller = controller + self._project = project self._datatype = datatype self._base_path = base_path or str(Path().home().resolve()) self._type_map = {DataTypes.GRAVITY: 0, DataTypes.TRAJECTORY: 1} self._type_filters = {DataTypes.GRAVITY: "Gravity (*.dat *.csv);;Any (*.*)", DataTypes.TRAJECTORY: "Trajectory (*.dat *.csv *.txt);;Any (*.*)"} - self._gravity = QListWidgetItem("Gravity") + # Declare parameter names and values mapped from the dialog for specific DataType + # These match up with the methods in trajectory/gravity_ingestor + self._params_map = { + DataTypes.GRAVITY: { + 'columns': lambda: None, # TODO: Change in future based on Sensor Type + 'interp': lambda: self.qchb_grav_interp.isChecked(), + 'skiprows': lambda: 1 if self.qchb_grav_hasheader.isChecked() else 0 + }, + DataTypes.TRAJECTORY: { + 'timeformat': lambda: self.qcb_traj_timeformat.currentText().lower(), + 'columns': lambda: self.qcb_traj_timeformat.currentData(Qt.UserRole), + 'skiprows': lambda: 1 if self.qchb_traj_hasheader.isChecked() else 0, + 'is_utc': lambda: self.qchb_traj_isutc.isChecked() + } + } + + self._gravity = QListWidgetItem(QIcon(":/icons/gravity"), "Gravity") self._gravity.setData(Qt.UserRole, DataTypes.GRAVITY) - self._trajectory = QListWidgetItem("Trajectory") + self._trajectory = QListWidgetItem(QIcon(":/icons/gps"), "Trajectory") self._trajectory.setData(Qt.UserRole, DataTypes.TRAJECTORY) self.qlw_datatype.addItem(self._gravity) self.qlw_datatype.addItem(self._trajectory) self.qlw_datatype.setCurrentRow(self._type_map.get(datatype, 0)) - self._flight_model = self._controller.flight_model # type: QStandardItemModel + self._flight_model = self.project.flight_model # type: QStandardItemModel self.qcb_flight.setModel(self._flight_model) self.qde_date.setDate(datetime.today()) self._calendar = QCalendarWidget() self.qde_date.setCalendarWidget(self._calendar) self.qde_date.setCalendarPopup(True) + self.qpb_date_from_flight.clicked.connect(self._set_date) # Gravity Widget self.qcb_gravimeter.currentIndexChanged.connect(self._gravimeter_changed) - self._meter_model = self._controller.meter_model # type: QStandardItemModel + self._meter_model = self.project.meter_model # type: QStandardItemModel self.qcb_gravimeter.setModel(self._meter_model) - self.qpb_add_sensor.clicked.connect(self._controller.add_gravimeter) + self.qpb_add_sensor.clicked.connect(self.project.add_gravimeter) if self._meter_model.rowCount() == 0: print("NO meters available") self.qcb_gravimeter.setCurrentIndex(0) # Trajectory Widget + self._traj_timeformat_model = QStandardItemModel() + self.qcb_traj_timeformat.setModel(self._traj_timeformat_model) + self.qcb_traj_timeformat.currentIndexChanged.connect(self._traj_timeformat_changed) + sow = QStandardItem("SOW") + sow.setData(['week', 'sow', 'lat', 'long', 'ell_ht'], Qt.UserRole) + hms = QStandardItem("HMS") + hms.setData(['mdy', 'hms', 'lat', 'long', 'ell_ht'], Qt.UserRole) + serial = QStandardItem("Serial") + serial.setData(['datenum', 'lat', 'long', 'ell_ht'], Qt.UserRole) + self._traj_timeformat_model.appendRow(hms) + self._traj_timeformat_model.appendRow(sow) + self._traj_timeformat_model.appendRow(serial) # Signal connections + self.qle_filepath.textChanged.connect(self._filepath_changed) self.qlw_datatype.currentItemChanged.connect(self._datatype_changed) self.qpb_browse.clicked.connect(self._browse) - self.qpb_add_flight.clicked.connect(self._controller.add_flight) - - def set_initial_flight(self, flight): - print("Setting initial flight to: " + str(flight)) - if flight is None: - return - - def _load_gravity(self, flt: FlightController): - col_fmt = self.qle_grav_format.text() - file = DataFile(flt.uid.base_uuid, 'gravity', self.date, self.file_path, col_fmt) + self.qpb_add_flight.clicked.connect(self.project.add_flight) + + self.qsw_advanced_properties.setCurrentIndex(self._type_map[datatype]) + + def set_initial_flight(self, flight: IFlightController): + for i in range(self._flight_model.rowCount()): + child = self._flight_model.item(i, 0) + if child.uid == flight.uid: + self.qcb_flight.setCurrentIndex(i) + return + + def _load_file(self): + # TODO: How to deal with type specific fields + file = DataFile(self.flight.uid.base_uuid, self.datatype.value.lower(), date=self.date, + source_path=self.file_path, name=self.qle_rename.text()) + param_map = self._params_map[self.datatype] + # Evaluate and build params dict + params = {key: value() for key, value in param_map.items()} + self.flight.add_child(file) + self.load.emit(file, params) + return True - # Important: We need to retrieve the ACTUAL flight controller, not the clone - fc = self._controller.get_child_controller(flt.proxied) - fc.add_child(file) - self.load.emit(file) + @property + def project(self) -> IAirborneController: + return self._project - def _load_trajectory(self): - pass + @property + def flight(self) -> IFlightController: + fc = self._flight_model.item(self.qcb_flight.currentIndex()) + return self.project.get_child(fc.uid) @property def file_path(self) -> Union[Path, None]: @@ -112,22 +157,32 @@ def accept(self): self.ql_path.setStyleSheet("color: red") self.log.warning("Path must be a file, not a directory.") - # Note: This FlightController is a Clone - fc = self._flight_model.item(self.qcb_flight.currentIndex()) - - if self.datatype == DataTypes.GRAVITY: - self._load_gravity(fc) - return super().accept() - elif self.datatype == DataTypes.TRAJECTORY: - self._load_trajectory() + if self._load_file(): + if self.qchb_copy_file.isChecked(): + self._copy_file() return super().accept() - self.log.error("Unknown Datatype supplied to import dialog. %s", str(self.datatype)) - return super().accept() + raise TypeError("Unhandled DataType supplied to import dialog: %s" % str(self.datatype)) + + def _copy_file(self): + src = self.file_path + dest_name = src.name + if self.qle_rename.text(): + dest_name = self.qle_rename.text() + '.dat' + + dest = self.project.path.resolve().joinpath(dest_name) + try: + shutil.copy(src, dest) + except IOError: + self.log.exception("Unable to copy source file to project directory.") + + def _set_date(self): + self.qde_date.setDate(self.flight.date) @pyqtSlot(name='_browse') def _browse(self): - path, _ = QFileDialog.getOpenFileName(self, "Browse for data file", str(self._browse_path), + path, _ = QFileDialog.getOpenFileName(self, "Browse for data file", + str(self._browse_path), self._type_filters[self._datatype]) if path: self.qle_filepath.setText(path) @@ -137,9 +192,37 @@ def _datatype_changed(self, current: QListWidgetItem, previous: QListWidgetItem) self._datatype = current.data(Qt.UserRole) self.qsw_advanced_properties.setCurrentIndex(self._type_map[self._datatype]) + def _filepath_changed(self, text: str): + """ + Detect attributes of file and display them in the dialog info section + """ + path = Path(text) + if not path.is_file(): + return + self.qle_filename.setText(path.name) + st_size_mib = path.stat().st_size / 1048576 # 1024 ** 2 + self.qle_filesize.setText("{:.3f} MiB".format(st_size_mib)) + with path.open(mode='r', newline='') as fd: + try: + has_header = csv.Sniffer().has_header(fd.read(8192)) + except csv.Error: + has_header = False + print("File has header row: " + str(has_header)) + fd.seek(0) + + # Detect line count + lines = fd.readlines() + line_count = len(lines) + col_count = len(lines[0].split(',')) + self.qle_linecount.setText(str(line_count)) + self.qle_colcount.setText(str(col_count)) + + + + @pyqtSlot(int, name='_gravimeter_changed') def _gravimeter_changed(self, index: int): - meter_ctrl = self._controller.meter_model.item(index) + meter_ctrl = self.project.meter_model.item(index) if not meter_ctrl: self.log.debug("No meter available") return @@ -147,3 +230,9 @@ def _gravimeter_changed(self, index: int): sensor_type = meter_ctrl.sensor_type or "Unknown" self.qle_sensortype.setText(sensor_type) self.qle_grav_format.setText(meter_ctrl.column_format) + + @pyqtSlot(int, name='_traj_timeformat_changed') + def _traj_timeformat_changed(self, index: int): + timefmt = self._traj_timeformat_model.item(index) + cols = ', '.join(timefmt.data(Qt.UserRole)) + self.qle_traj_format.setText(cols) diff --git a/dgp/gui/main.py b/dgp/gui/main.py index c69181c..caad2b5 100644 --- a/dgp/gui/main.py +++ b/dgp/gui/main.py @@ -18,7 +18,7 @@ from dgp.core.models.project import AirborneProject from dgp.gui.utils import (ConsoleHandler, LOG_FORMAT, LOG_LEVEL_MAP, LOG_COLOR_MAP, get_project_file) -from dgp.gui.dialogs import CreateProjectDialog +from dgp.gui.dialog.create_project_dialog import CreateProjectDialog from dgp.gui.workspace import FlightTab from dgp.gui.ui.main_window import Ui_MainWindow diff --git a/dgp/gui/plotting/backends.py b/dgp/gui/plotting/backends.py index 90e484d..29b5626 100644 --- a/dgp/gui/plotting/backends.py +++ b/dgp/gui/plotting/backends.py @@ -1,28 +1,16 @@ # -*- coding: utf-8 -*- -from abc import ABCMeta, abstractmethod -from functools import partial, partialmethod from itertools import cycle -from typing import Union, Generator +from typing import List -from PyQt5.QtCore import pyqtSignal -import PyQt5.QtWidgets as QtWidgets import pandas as pd -from matplotlib.axes import Axes -from matplotlib.backend_bases import MouseEvent, PickEvent -from matplotlib.backends.backend_qt5agg import (FigureCanvasQTAgg) -from matplotlib.dates import DateFormatter -from matplotlib.figure import Figure -from matplotlib.gridspec import GridSpec -from matplotlib.lines import Line2D -from matplotlib.ticker import AutoLocator from pyqtgraph.widgets.GraphicsView import GraphicsView from pyqtgraph.graphicsItems.GraphicsLayout import GraphicsLayout -from pyqtgraph.graphicsItems.AxisItem import AxisItem -from pyqtgraph.graphicsItems.PlotDataItem import PlotDataItem -from pyqtgraph.widgets.PlotWidget import PlotWidget, PlotItem +from pyqtgraph.widgets.PlotWidget import PlotItem from pyqtgraph import SignalProxy +from .helpers import DateAxis + """ Rationale for StackedMPLWidget and StackedPGWidget: Each of these classes should act as a drop-in replacement for the other, @@ -40,165 +28,22 @@ interface for plotting. However, the Stacked*Widget classes might nicely encapsulate what was intended there. """ -__all__ = ['StackedMPLWidget', 'PyQtGridPlotWidget', 'AbstractSeriesPlotter', - 'DateAxis'] - - -class DateAxis(AxisItem): - minute = pd.Timedelta(minutes=1).value - hour = pd.Timedelta(hours=1).value - day = pd.Timedelta(days=2).value - - def tickStrings(self, values, scale, spacing): - """ - - Parameters - ---------- - values : List - List of values to return strings for - scale : Scalar - Used for SI notation prefixes - spacing : Scalar - Spacing between values/ticks - - Returns - ------- - List of strings used to label the plot at the given values - - Notes - ----- - This function may be called multiple times for the same plot, - where multiple tick-levels are defined i.e. Major/Minor/Sub-Minor ticks. - The range of the values may also differ between invocations depending on - the positioning of the chart. And the spacing will be different - dependent on how the ticks were placed by the tickSpacing() method. - - """ - if not values: - rng = 0 - else: - rng = max(values) - min(values) - - labels = [] - # TODO: Maybe add special tick format for first tick - if rng < self.minute: - fmt = '%H:%M:%S' - - elif rng < self.hour: - fmt = '%H:%M:%S' - elif rng < self.day: - fmt = '%H:%M' - else: - if spacing > self.day: - fmt = '%y:%m%d' - elif spacing >= self.hour: - fmt = '%H' - else: - fmt = '' - - for x in values: - try: - labels.append(pd.to_datetime(x).strftime(fmt)) - except ValueError: # Windows can't handle dates before 1970 - labels.append('') - except OSError: - pass - return labels - - def tickSpacing(self, minVal, maxVal, size): - """ - The return value must be a list of tuples, one for each set of ticks:: - - [ - (major tick spacing, offset), - (minor tick spacing, offset), - (sub-minor tick spacing, offset), - ... - ] - - """ - rng = pd.Timedelta(maxVal - minVal).value - # offset = pd.Timedelta(seconds=36).value - offset = 0 - if rng < pd.Timedelta(minutes=5).value: - mjrspace = pd.Timedelta(seconds=15).value - mnrspace = pd.Timedelta(seconds=5).value - elif rng < self.hour: - mjrspace = pd.Timedelta(minutes=5).value - mnrspace = pd.Timedelta(minutes=1).value - elif rng < self.day: - mjrspace = pd.Timedelta(hours=1).value - mnrspace = pd.Timedelta(minutes=5).value - else: - return [(pd.Timedelta(hours=12).value, offset)] - - spacing = [ - (mjrspace, offset), # Major - (mnrspace, offset) # Minor - ] - return spacing - - -class StackedMPLWidget(FigureCanvasQTAgg): - def __init__(self, rows=1, sharex=True, width=8, height=4, dpi=100, - parent=None): - super().__init__(Figure(figsize=(width, height), dpi=dpi, - tight_layout=True)) - self.setParent(parent) - super().setSizePolicy(QtWidgets.QSizePolicy.Expanding, - QtWidgets.QSizePolicy.Expanding) - super().updateGeometry() - - self.figure.canvas.mpl_connect('pick_event', self.onpick) - self.figure.canvas.mpl_connect('button_press_event', self.onclick) - self.figure.canvas.mpl_connect('button_release_event', self.onrelease) - self.figure.canvas.mpl_connect('motion_notify_event', self.onmotion) - - self._plots = [] - self.plots = [] - - spec = GridSpec(nrows=rows, ncols=1) - for row in range(rows): - if row >= 1 and sharex: - plot = self.figure.add_subplot(spec[row], sharex=self._plots[0]) - else: - plot = self.figure.add_subplot(spec[row]) - - if row == rows - 1: - # Add x-axis ticks on last plot only - plot.xaxis.set_major_locator(AutoLocator()) - # TODO: Dynamically apply this - plot.xaxis.set_major_formatter(DateFormatter("%H:%M:%S")) - self._plots.append(plot) - self.plots.append(MPLAxesWrapper(plot, self.figure.canvas)) - - def __len__(self): - return len(self._plots) - - def get_plot(self, row) -> 'AbstractSeriesPlotter': - return self.plots[row] - - def onclick(self, event: MouseEvent): - pass - - def onrelease(self, event: MouseEvent): - pass - - def onmotion(self, event: MouseEvent): - pass - - def onpick(self, event: PickEvent): - pass +__all__ = ['PyQtGridPlotWidget'] class PyQtGridPlotWidget(GraphicsView): + # TODO: Use multiple Y-Axes to plot 2 lines of different scales + # See pyqtgraph/examples/MultiplePlotAxes.py + colors = ['r', 'g', 'b', 'g'] + colorcycle = cycle([{'color': v} for v in colors]) + def __init__(self, rows=1, cols=1, background='w', grid=True, sharex=True, sharey=False, tickFormatter='date', parent=None): super().__init__(parent=parent, background=background) self._gl = GraphicsLayout(parent=parent) self.setCentralItem(self._gl) - self._plots = [] - self._wrapped = [] + self._plots = [] # type: List[PlotItem] + self._lines = {} # Store ref to signal proxies so they are not GC'd self._sigproxies = [] @@ -220,227 +65,58 @@ def __init__(self, rows=1, cols=1, background='w', grid=True, plot.showGrid(x=grid, y=grid) plot.addLegend(offset=(-15, 15)) self._plots.append(plot) - self._wrapped.append(PlotWidgetWrapper(plot)) - - def __len__(self): - return len(self._plots) - - def add_series(self, series, idx=0, *args, **kwargs): - return self._wrapped[idx].add_series(series, *args, **kwargs) - - def remove_series(self, series): - for plot in self._wrapped: - plot.remove_series(id(series)) - - def add_onclick_handler(self, slot, rateLimit=60): - sp = SignalProxy(self._gl.scene().sigMouseClicked, rateLimit=rateLimit, - slot=slot) - self._sigproxies.append(sp) - return sp @property def plots(self): - return self._wrapped + return self._plots - def get_plot(self, row): - return self._plots[row] - - -class AbstractSeriesPlotter(metaclass=ABCMeta): - """ - Abstract Base Class used to define an interface for different plotter - wrappers. - - """ - sigItemPlotted = pyqtSignal() - - colors = ['r', 'g', 'b', 'g'] - colorcycle = cycle([{'color': v} for v in colors]) - - def __getattr__(self, item): - """Passes attribute calls to underlying plotter object if no override - in AbstractSeriesPlotter implementation.""" - if hasattr(self.plotter, item): - attr = getattr(self.plotter, item) - return attr - raise AttributeError(item) - - @abstractmethod def __len__(self): - pass - - @property - @abstractmethod - def plotter(self) -> Union[Axes, PlotWidget]: - """This property should return the underlying plot object, either a - Matplotlib Axes or a PyQtgraph PlotWidget""" - pass - - @property - @abstractmethod - def items(self): - """This property should return a list or a generator which yields the - items plotted on the plot.""" - pass - - @abstractmethod - def plot(self, *args, **kwargs): - pass - - @abstractmethod - def add_series(self, series, *args, **kwargs): - pass - - @abstractmethod - def remove_series(self, series): - pass - - @abstractmethod - def draw(self) -> None: - pass - - @abstractmethod - def clear(self) -> None: - """This method should clear all items from the Plotter""" - pass - - @abstractmethod - def get_xlim(self): - pass - - @abstractmethod - def get_ylim(self): - pass - - -class PlotWidgetWrapper(AbstractSeriesPlotter): - """Bridge class wrapper around a PyQtGraph plot object""" - def __init__(self, plot: PlotItem): - self._plot = plot - self._lines = {} # id(Series): line - self._data = {} # id(Series): series - - def __len__(self): - return len(self._lines) - - @property - def plotter(self) -> PlotWidget: - return self._plot - - @property - def _plotitem(self) -> PlotItem: - # return self._plot.plotItem - return self._plot - - @property - def items(self) -> Generator[PlotDataItem, None, None]: - for item in self._lines.values(): - yield item - - def plot(self, x, y, *args, **kwargs): - if isinstance(x, pd.Series): - self.add_series(x, *args, **kwargs) - else: - self._plot.plot(x, y, *args, **kwargs) - - def add_series(self, series: pd.Series, fmter='date', *args, **kwargs): - """Take in a pandas Series, add it to the plot and retain a - reference. + return len(self._plots) - Parameters - ---------- - series : pd.Series - fmter : str - 'date' or 'scalar' - Set the plot to use a date formatter or scalar formatter on the - x-axis - """ + def add_series(self, series: pd.Series, idx=0, formatter='date', *args, **kwargs): + # TODO why not get rid of the wrappers and perfrom the functionality here + # Remove a layer of confusing indirection + # return self._wrapped[idx].add_series(series, *args, **kwargs) + plot = self._plots[idx] sid = id(series) if sid in self._lines: - print("Series already plotted") - return + # Constraint - allow line on only 1 plot at a time + self.remove_series(series) + xvals = pd.to_numeric(series.index, errors='coerce') yvals = pd.to_numeric(series.values, errors='coerce') - - line = self._plot.plot(x=xvals, y=yvals, - name=series.name, - pen=next(self.colorcycle)) # type: PlotDataItem + line = plot.plot(x=xvals, y=yvals, name=series.name, pen=next(self.colorcycle)) self._lines[sid] = line - # self.sigItemPlotted.emit() return line - def remove_series(self, sid): - # sid = id(series) + def remove_series(self, series: pd.Series): + # TODO: As above, remove the wrappers, do stuff here + sid = id(series) if sid not in self._lines: + return - self._plotitem.legend.removeItem(self._lines[sid].name()) - self._plot.removeItem(self._lines[sid]) + for plot in self._plots: # type: PlotItem + plot.legend.removeItem(self._lines[sid].name()) + plot.removeItem(self._lines[sid]) del self._lines[sid] - def draw(self): - """Draw is uncecesarry for Pyqtgraph plots""" - pass - def clear(self): + """Clear all lines from all plots""" + # TODO: Implement this pass - def get_ylim(self): - return self._plotitem.vb.viewRange()[1] - - def get_xlim(self): - return self._plotitem.vb.viewRange()[0] - - -class MPLAxesWrapper(AbstractSeriesPlotter): - - def __init__(self, plot, canvas): - assert isinstance(plot, Axes) - self._plot = plot - self._lines = {} # id(Series): Line2D - self._canvas = canvas # type: FigureCanvas - - def __len__(self): - return len(self._lines) - - @property - def plotter(self) -> Axes: - return self._plot - - @property - def items(self): - for item in self._lines.values(): - yield item - - def plot(self, *args, **kwargs): - pass - - def add_series(self, series, *args, **kwargs): - line = self._plot.plot(series.index, series.values, - color=next(self.colorcycle)['color'], - label=series.name) - self._lines[id(series)] = line - self.draw() - return line - - def remove_series(self, series): - sid = id(series) - if sid not in self._lines: - return - line = self._lines[sid] # type: Line2D - line.remove() - del self._lines[sid] + def add_onclick_handler(self, slot, rateLimit=60): + sp = SignalProxy(self._gl.scene().sigMouseClicked, rateLimit=rateLimit, + slot=slot) + self._sigproxies.append(sp) + return sp - def draw(self) -> None: - self._canvas.draw() + def get_xlim(self, index=0): + return self._plots[index].vb.viewRange()[0] - def clear(self) -> None: - for sid in [s for s in self._lines]: - item = self._lines[sid] - item.remove() - del self._lines[sid] + def get_ylim(self, index=0): + return self._plots[index].vb.viewRange()[1] - def get_ylim(self): - return self._plot.get_ylim() + def get_plot(self, row): + return self._plots[row] - def get_xlim(self): - return self._plot.get_xlim() diff --git a/dgp/gui/plotting/helpers.py b/dgp/gui/plotting/helpers.py new file mode 100644 index 0000000..dd6fed1 --- /dev/null +++ b/dgp/gui/plotting/helpers.py @@ -0,0 +1,170 @@ +# -*- coding: utf-8 -*- +import pandas as pd + +from PyQt5.QtCore import Qt, QPoint +from PyQt5.QtWidgets import QAction, QInputDialog, QMenu +from pyqtgraph import LinearRegionItem, TextItem, AxisItem + + +class DateAxis(AxisItem): + minute = pd.Timedelta(minutes=1).value + hour = pd.Timedelta(hours=1).value + day = pd.Timedelta(days=2).value + + def tickStrings(self, values, scale, spacing): + """ + + Parameters + ---------- + values : List + List of values to return strings for + scale : Scalar + Used for SI notation prefixes + spacing : Scalar + Spacing between values/ticks + + Returns + ------- + List of strings used to label the plot at the given values + + Notes + ----- + This function may be called multiple times for the same plot, + where multiple tick-levels are defined i.e. Major/Minor/Sub-Minor ticks. + The range of the values may also differ between invocations depending on + the positioning of the chart. And the spacing will be different + dependent on how the ticks were placed by the tickSpacing() method. + + """ + if not values: + rng = 0 + else: + rng = max(values) - min(values) + + labels = [] + # TODO: Maybe add special tick format for first tick + if rng < self.minute: + fmt = '%H:%M:%S' + + elif rng < self.hour: + fmt = '%H:%M:%S' + elif rng < self.day: + fmt = '%H:%M' + else: + if spacing > self.day: + fmt = '%y:%m%d' + elif spacing >= self.hour: + fmt = '%H' + else: + fmt = '' + + for x in values: + try: + labels.append(pd.to_datetime(x).strftime(fmt)) + except ValueError: # Windows can't handle dates before 1970 + labels.append('') + except OSError: + pass + return labels + + def tickSpacing(self, minVal, maxVal, size): + """ + The return value must be a list of tuples, one for each set of ticks:: + + [ + (major tick spacing, offset), + (minor tick spacing, offset), + (sub-minor tick spacing, offset), + ... + ] + + """ + rng = pd.Timedelta(maxVal - minVal).value + # offset = pd.Timedelta(seconds=36).value + offset = 0 + if rng < pd.Timedelta(minutes=5).value: + mjrspace = pd.Timedelta(seconds=15).value + mnrspace = pd.Timedelta(seconds=5).value + elif rng < self.hour: + mjrspace = pd.Timedelta(minutes=5).value + mnrspace = pd.Timedelta(minutes=1).value + elif rng < self.day: + mjrspace = pd.Timedelta(hours=1).value + mnrspace = pd.Timedelta(minutes=5).value + else: + return [(pd.Timedelta(hours=12).value, offset)] + + spacing = [ + (mjrspace, offset), # Major + (mnrspace, offset) # Minor + ] + return spacing + + +class LinearFlightRegion(LinearRegionItem): + """Custom LinearRegionItem class to provide override methods on various + click events.""" + + def __init__(self, values=(0, 1), orientation=None, brush=None, + movable=True, bounds=None, parent=None, label=None): + super().__init__(values=values, orientation=orientation, brush=brush, + movable=movable, bounds=bounds) + + self.parent = parent + self._grpid = None + self._label_text = label or '' + self.label = TextItem(text=self._label_text, color=(0, 0, 0), + anchor=(0, 0)) + # self.label.setPos() + self._menu = QMenu() + self._menu.addAction(QAction('Remove', self, triggered=self._remove)) + self._menu.addAction(QAction('Set Label', self, + triggered=self._getlabel)) + self.sigRegionChanged.connect(self._move_label) + + @property + def group(self): + return self._grpid + + @group.setter + def group(self, value): + self._grpid = value + + def mouseClickEvent(self, ev): + if not self.parent.selection_mode: + return + if ev.button() == Qt.RightButton and not self.moving: + ev.accept() + pos = ev.screenPos().toPoint() + pop_point = QPoint(pos.x(), pos.y()) + self._menu.popup(pop_point) + return True + else: + return super().mouseClickEvent(ev) + + def _move_label(self, lfr): + x0, x1 = self.getRegion() + + self.label.setPos(x0, 0) + + def _remove(self): + try: + self.parent.remove(self) + except AttributeError: + return + + def _getlabel(self): + text, result = QInputDialog.getText(None, + "Enter Label", + "Line Label:", + text=self._label_text) + if not result: + return + try: + self.parent.set_label(self, str(text).strip()) + except AttributeError: + return + + def set_label(self, text): + self.label.setText(text) + diff --git a/dgp/gui/plotting/plotters.py b/dgp/gui/plotting/plotters.py index 92fdc13..678c45b 100644 --- a/dgp/gui/plotting/plotters.py +++ b/dgp/gui/plotting/plotters.py @@ -5,20 +5,20 @@ """ import logging from itertools import count -from typing import Dict, Tuple, Union, List +from typing import List import pandas as pd import PyQt5.QtCore as QtCore -import PyQt5.QtWidgets as QtWidgets -from PyQt5.QtWidgets import QMenu, QAction from PyQt5.QtCore import pyqtSignal +from pyqtgraph import PlotItem + +from dgp.core.oid import OID from dgp.lib.types import LineUpdate -from dgp.lib.etc import gen_uuid -from .backends import AbstractSeriesPlotter, PyQtGridPlotWidget +from .helpers import LinearFlightRegion +from .backends import PyQtGridPlotWidget import pyqtgraph as pg from pyqtgraph.graphicsItems.LinearRegionItem import LinearRegionItem -from pyqtgraph.graphicsItems.TextItem import TextItem _log = logging.getLogger(__name__) @@ -43,7 +43,7 @@ def __init__(self, rows=2, cols=1, sharex=True, sharey=False, grid=True, background='w', parent=parent, tickFormatter=tickformatter) @property - def plots(self) -> List[AbstractSeriesPlotter]: + def plots(self) -> List[PlotItem]: return self.widget.plots def __getattr__(self, item): @@ -103,7 +103,7 @@ def add_patch(self, *args): pass @property - def plots(self) -> List[AbstractSeriesPlotter]: + def plots(self) -> List[PlotItem]: return self.widget.plots def _check_proximity(self, x, span, proximity=0.03) -> bool: @@ -157,7 +157,8 @@ def onclick(self, ev): event.accept() # Map click location to data coordinates xpos = p0.vb.mapToView(pos).x() - v0, v1 = p0.get_xlim() + # v0, v1 = p0.get_xlim() + v0, v1 = self.widget.get_xlim(0) vb_span = v1 - v0 if not self._check_proximity(xpos, vb_span): return @@ -182,8 +183,9 @@ def add_linked_selection(self, start, stop, uid=None, label=None): patch_region = [start, stop] lfr_group = [] - grpid = uid or gen_uuid('flr') - update = LineUpdate(self._flight.uid, 'add', grpid, + grpid = uid or OID(tag='flightline') + # Note pd.to_datetime(scalar) returns pd.Timestamp + update = LineUpdate('add', grpid, pd.to_datetime(start), pd.to_datetime(stop), None) for i, plot in enumerate(self.plots): @@ -205,8 +207,9 @@ def remove(self, item: LinearFlightRegion): return grpid = item.group - update = LineUpdate(self._flight.uid, 'remove', grpid, - pd.to_datetime(1), pd.to_datetime(1), None) + x0, x1 = item.getRegion() + update = LineUpdate('remove', grpid, + pd.to_datetime(x0), pd.to_datetime(x1), None) grp = self._selections[grpid] for i, plot in enumerate(self.plots): plot.removeItem(grp[i].label) @@ -222,7 +225,7 @@ def set_label(self, item: LinearFlightRegion, text: str): lfr.set_label(text) x0, x1 = item.getRegion() - update = LineUpdate(self._flight.uid, 'modify', item.group, + update = LineUpdate('modify', item.group, pd.to_datetime(x0), pd.to_datetime(x1), text) self.line_changed.emit(update) @@ -256,7 +259,7 @@ def update(self, item: LinearFlightRegion): def _update_done(self): self._update_timer.stop() x0, x1 = self._line_update.getRegion() - update = LineUpdate(self._flight.uid, 'modify', self._line_update.group, + update = LineUpdate('modify', self._line_update.group, pd.to_datetime(x0), pd.to_datetime(x1), None) self.line_changed.emit(update) self._line_update = None diff --git a/dgp/gui/splash.py b/dgp/gui/splash.py index d6be53b..ceb146f 100644 --- a/dgp/gui/splash.py +++ b/dgp/gui/splash.py @@ -11,11 +11,11 @@ import PyQt5.QtCore as QtCore from PyQt5.uic import loadUiType -from core.controllers.project_controllers import AirborneProjectController -from core.models.project import AirborneProject, GravityProject +from dgp.core.controllers.project_controllers import AirborneProjectController +from dgp.core.models.project import AirborneProject, GravityProject from dgp.gui.main import MainWindow from dgp.gui.utils import ConsoleHandler, LOG_FORMAT, LOG_COLOR_MAP, get_project_file -from dgp.gui.dialogs import CreateProjectDialog +from dgp.gui.dialog.create_project_dialog import CreateProjectDialog splash_screen, _ = loadUiType('dgp/gui/ui/splash_screen.ui') diff --git a/dgp/gui/ui/add_flight_dialog.ui b/dgp/gui/ui/add_flight_dialog.ui index 94cb043..d7752f6 100644 --- a/dgp/gui/ui/add_flight_dialog.ui +++ b/dgp/gui/ui/add_flight_dialog.ui @@ -69,6 +69,26 @@ + + + + Flight Sequence + + + + + + + + + + Flight Duration (hrs) + + + + + + @@ -80,7 +100,25 @@ - + + + + + + 0 + 0 + + + + + + + + Add Sensor... + + + + @@ -92,26 +130,6 @@ - - - - Flight Sequence - - - - - - - - - - Flight Duration - - - - - - diff --git a/dgp/gui/ui/add_meter_dialog.ui b/dgp/gui/ui/add_meter_dialog.ui index b112a96..561e2e6 100644 --- a/dgp/gui/ui/add_meter_dialog.ui +++ b/dgp/gui/ui/add_meter_dialog.ui @@ -11,7 +11,7 @@ - Dialog + Add Gravimeter @@ -40,6 +40,9 @@ + + 9 + @@ -80,17 +83,41 @@ - + + + + 0 + 0 + + + - + - ... + Browse... + + + + Notes + + + + + + + + 0 + 0 + + + + diff --git a/dgp/gui/ui/create_project_dialog.ui b/dgp/gui/ui/create_project_dialog.ui new file mode 100644 index 0000000..2ff35c6 --- /dev/null +++ b/dgp/gui/ui/create_project_dialog.ui @@ -0,0 +1,447 @@ + + + CreateProjectDialog + + + + 0 + 0 + 800 + 450 + + + + + 0 + 0 + + + + + 0 + 0 + + + + + 16777215 + 16777215 + + + + + 50 + 50 + + + + Create New Project + + + + :/icons/dgs:/icons/dgs + + + + + + true + + + false + + + + 0 + + + 0 + + + 0 + + + + + + 0 + 0 + + + + + 0 + 0 + + + + + 16777215 + 16777215 + + + + QFrame::Raised + + + 1 + + + + 20 + 20 + + + + QListView::ListMode + + + true + + + + + + + 3 + + + 5 + + + 5 + + + + + QLayout::SetNoConstraint + + + QFormLayout::ExpandingFieldsGrow + + + Qt::AlignLeading|Qt::AlignLeft|Qt::AlignVCenter + + + Qt::AlignRight|Qt::AlignTop|Qt::AlignTrailing + + + 3 + + + + + + 0 + 0 + + + + + 0 + 25 + + + + Project Name:* + + + prj_name + + + + + + + + + + 0 + 1 + + + + + 0 + 25 + + + + + 8 + + + + + + + + + + + 0 + 0 + + + + + 0 + 25 + + + + Project Directory:* + + + prj_dir + + + + + + + 2 + + + 0 + + + 0 + + + + + + 0 + 1 + + + + + 0 + 25 + + + + + 8 + + + + true + + + Qt::AlignLeading|Qt::AlignLeft|Qt::AlignVCenter + + + false + + + + + + + + 0 + 0 + + + + Browse... + + + + + + + + + + 75 + true + + + + required fields* + + + Qt::AlignRight|Qt::AlignTrailing|Qt::AlignVCenter + + + + + + + + + Qt::Horizontal + + + + 40 + 20 + + + + + + + + false + + + Properties + + + + + + + + + + + + + + + + + + + + false + + + + + + + + + + + Qt::Horizontal + + + + 40 + 20 + + + + + + + + + 0 + 0 + + + + + 0 + 0 + + + + + 16777215 + 16777215 + + + + Cancel + + + + + + + + 0 + 0 + + + + + 0 + 0 + + + + + 16777215 + 16777215 + + + + Create + + + + + + + + + + + btn_create + prj_type_list + + + + + + + btn_cancel + clicked() + CreateProjectDialog + reject() + + + 219 + 278 + + + 249 + 149 + + + + + prj_properties + clicked() + widget_advanced + show() + + + 301 + 82 + + + 526 + 405 + + + + + btn_create + clicked() + CreateProjectDialog + accept() + + + 851 + 427 + + + 449 + 224 + + + + + diff --git a/dgp/gui/ui/data_import_dialog.ui b/dgp/gui/ui/data_import_dialog.ui index e0260b7..891c856 100644 --- a/dgp/gui/ui/data_import_dialog.ui +++ b/dgp/gui/ui/data_import_dialog.ui @@ -7,7 +7,7 @@ 0 0 732 - 629 + 685 @@ -23,7 +23,7 @@ - Data Import + Import Data @@ -40,13 +40,22 @@ QLayout::SetDefaultConstraint - 5 + 0 + + + 0 5 + + 0 + + + 6 + @@ -67,6 +76,12 @@ 2 + + 9 + + + 9 + @@ -104,13 +119,19 @@ + + Browse for file + + + Browse for a data file + Browse... - 20 - 20 + 16 + 16 @@ -120,15 +141,43 @@ - Tag + (Re)name - qle_filetag + qle_rename - + + + + + Rename the source file within the project + + + + + + + + + + Copy the raw source data file into the project directory when imported + + + Copy to Project Dir + + + + + + + Copy source file to project directory + + + + @@ -142,6 +191,9 @@ + + 2 + @@ -155,7 +207,7 @@ - Add Flight + Add new flight to project Add Flight... @@ -164,14 +216,7 @@ - - - - Date - - - - + Notes @@ -181,7 +226,7 @@ - + Qt::ScrollBarAlwaysOff @@ -189,19 +234,59 @@ - + + + + + + + + + 0 + 0 + + + + Use date from associated flight + + + From Flight + + + + :/icons/airborne:/icons/airborne + + + + + + + + + Date + + + + + 0 + 0 + + - 0 + 1 - 12 + 0 + + + 0 @@ -216,12 +301,12 @@ - 4 + 0 - Gravimeter + Sensor @@ -243,10 +328,10 @@ - Add Gravimeter + Add new Gravimeter to project - Add Gravimeter... + Add Sensor... @@ -297,6 +382,20 @@ + + + + Has Header Row + + + + + + + Interpolate Missing Numeric Fields + + + @@ -316,8 +415,14 @@ + + 0 + + + 0 + - + Trajectory Import @@ -326,14 +431,45 @@ - + - Column Format + GPS Time Format - + + + + + + Is UTC Time + + + true + + + + + + + Has Header Row + + + + + + + Column Names + + + + + + + false + + @@ -359,54 +495,68 @@ - File Info: + File Info - + File Size (MiB) - + false - + Line Count - + false - + Column Count - + false + + + + File Name + + + + + + + false + + + @@ -434,6 +584,25 @@ + + qlw_datatype + qle_filepath + qpb_browse + qle_rename + qchb_copy_file + qcb_flight + qpb_add_flight + qpte_notes + qcb_gravimeter + qpb_add_sensor + qle_sensortype + qle_grav_format + qtb_grav_format_adv + qle_filesize + qle_linecount + qle_colcount + qcb_traj_timeformat + @@ -445,8 +614,8 @@ accept() - 253 - 408 + 513 + 618 157 @@ -461,8 +630,8 @@ reject() - 321 - 408 + 581 + 618 286 diff --git a/dgp/gui/workspaces/PlotTab.py b/dgp/gui/workspaces/PlotTab.py index b89cf19..21fbaf2 100644 --- a/dgp/gui/workspaces/PlotTab.py +++ b/dgp/gui/workspaces/PlotTab.py @@ -1,16 +1,18 @@ # -*- coding: utf-8 -*- - import logging +import pandas as pd + from PyQt5.QtCore import Qt -from PyQt5.QtWidgets import QVBoxLayout, QHBoxLayout +from PyQt5.QtGui import QStandardItem +from PyQt5.QtWidgets import QVBoxLayout, QHBoxLayout, QDockWidget, QWidget, QListView, QSizePolicy import PyQt5.QtWidgets as QtWidgets -import dgp.gui.models as models -import dgp.lib.types as types +from dgp.core.controllers.flightline_controller import FlightLineController +from dgp.core.models.flight import FlightLine +from gui.widgets.channel_select_widget import ChannelSelectWidget from . import BaseTab -from core.controllers.flight_controller import FlightController -from dgp.gui.dialogs import ChannelSelectionDialog +from dgp.core.controllers.flight_controller import FlightController from dgp.gui.plotting.plotters import LineUpdate, PqtLineSelectPlot @@ -26,51 +28,61 @@ def __init__(self, label: str, flight: FlightController, axes: int, self.log = logging.getLogger('PlotTab') self._ctrl_widget = None self._axes_count = axes + self.plot = PqtLineSelectPlot(rows=2) + self.plot.line_changed.connect(self._on_modified_line) + # self._channel_select = ChannelSelectDialog(flight.data_model, plots=1, parent=self) self._setup_ui() - self._init_model(plot_default) def _setup_ui(self): - vlayout = QVBoxLayout() - top_button_hlayout = QHBoxLayout() - self._select_channels = QtWidgets.QPushButton("Select Channels") - self._select_channels.clicked.connect(self._show_select_dialog) - top_button_hlayout.addWidget(self._select_channels, - alignment=Qt.AlignLeft) + qhbl_main = QHBoxLayout() + qvbl_plot_layout = QVBoxLayout() + qhbl_top_buttons = QHBoxLayout() + self._qpb_channel_toggle = QtWidgets.QPushButton("Data Channels") + self._qpb_channel_toggle.setCheckable(True) + self._qpb_channel_toggle.setChecked(True) + qhbl_top_buttons.addWidget(self._qpb_channel_toggle, + alignment=Qt.AlignLeft) self._mode_label = QtWidgets.QLabel('') # top_button_hlayout.addSpacing(20) - top_button_hlayout.addStretch(2) - top_button_hlayout.addWidget(self._mode_label) - top_button_hlayout.addStretch(2) + qhbl_top_buttons.addStretch(2) + qhbl_top_buttons.addWidget(self._mode_label) + qhbl_top_buttons.addStretch(2) # top_button_hlayout.addSpacing(20) - self._toggle_mode = QtWidgets.QPushButton("Toggle Line Selection Mode") - self._toggle_mode.setCheckable(True) - self._toggle_mode.toggled.connect(self._toggle_selection) - top_button_hlayout.addWidget(self._toggle_mode, - alignment=Qt.AlignRight) - vlayout.addLayout(top_button_hlayout) - - self.plot = PqtLineSelectPlot(flight=self.flight, rows=3) - # TODO Renable this + self._qpb_toggle_mode = QtWidgets.QPushButton("Toggle Line Selection Mode") + self._qpb_toggle_mode.setCheckable(True) + self._qpb_toggle_mode.toggled.connect(self._toggle_selection) + qhbl_top_buttons.addWidget(self._qpb_toggle_mode, + alignment=Qt.AlignRight) + qvbl_plot_layout.addLayout(qhbl_top_buttons) + + # TODO Re-enable this # for line in self.flight.lines: # self.plot.add_patch(line.start, line.stop, line.uid, line.label) - self.plot.line_changed.connect(self._on_modified_line) - vlayout.addWidget(self.plot.widget) - # vlayout.addWidget(self.plot.get_toolbar(), alignment=Qt.AlignBottom) - self.setLayout(vlayout) + channel_widget = ChannelSelectWidget(self.flight.data_model) + channel_widget.channel_added.connect(self._channel_added) + channel_widget.channel_removed.connect(self._channel_removed) + channel_widget.channels_cleared.connect(self._clear_plot) - def _init_model(self, default_state=False): - # TODO: Reimplement this - return - channels = self.flight.channels - plot_model = models.ChannelListTreeModel(channels, len(self.plot)) - plot_model.plotOverflow.connect(self._too_many_children) - plot_model.channelChanged.connect(self._on_channel_changed) - self.model = plot_model + self.plot.widget.setSizePolicy(QSizePolicy(QSizePolicy.Expanding, QSizePolicy.Expanding)) + qvbl_plot_layout.addWidget(self.plot.widget) + dock_widget = QDockWidget("Channels") + dock_widget.setSizePolicy(QSizePolicy(QSizePolicy.Maximum, QSizePolicy.Preferred)) + dock_widget.setWidget(channel_widget) + self._qpb_channel_toggle.toggled.connect(dock_widget.setVisible) + qhbl_main.addItem(qvbl_plot_layout) + qhbl_main.addWidget(dock_widget) + self.setLayout(qhbl_main) - if default_state: - self.set_defaults(channels) + def _channel_added(self, plot: int, item: QStandardItem): + self.plot.add_series(item.data(Qt.UserRole), plot) + + def _channel_removed(self, plot: int, item: QStandardItem): + self.plot.remove_series(item.data(Qt.UserRole)) + + def _clear_plot(self): + print("Clearing plot") def _toggle_selection(self, state: bool): self.plot.selection_mode = state @@ -85,60 +97,44 @@ def set_defaults(self, channels): if channel.field == name.lower(): self.model.move_channel(channel.uid, plot) - def _show_select_dialog(self): - # TODO: Check that select dialog not already active - dlg = ChannelSelectionDialog(parent=self) - if self.model is not None: - dlg.set_model(self.model) - dlg.show() - - def data_modified(self, action: str, dsrc): - if action.lower() == 'add': - self.log.info("Adding channels to model.") - n_channels = dsrc.get_channels() - self.model.add_channels(*n_channels) - self.set_defaults(n_channels) - elif action.lower() == 'remove': - self.log.info("Removing channels from model.") - # Re-initialize model - source must be removed from flight first - self._init_model() - else: + def _on_modified_line(self, update: LineUpdate): + # TODO: Update this to work with new project + print(update) + start = update.start + stop = update.stop + try: + if isinstance(update.start, pd.Timestamp): + start = start.timestamp() + if isinstance(stop, pd.Timestamp): + stop = stop.timestamp() + except OSError: + print("Error converting Timestamp to float POSIX timestamp") return - def _on_modified_line(self, info: LineUpdate): - if info.uid in [x.uid for x in self.flight.lines]: - if info.action == 'modify': - line = self.flight.get_line(info.uid) - line.start = info.start - line.stop = info.stop - line.label = info.label + if update.uid in [x.uid for x in self.flight.lines]: + if update.action == 'modify': + line: FlightLineController = self.flight.get_child(update.uid) + line.update_line(start, stop, update.label) self.log.debug("Modified line: start={start}, stop={stop}," " label={label}" - .format(start=info.start, stop=info.stop, - label=info.label)) - elif info.action == 'remove': - self.flight.remove_line(info.uid) + .format(start=start, stop=stop, + label=update.label)) + elif update.action == 'remove': + line = self.flight.get_child(update.uid) # type: FlightLineController + if line is None: + self.log.warning("Couldn't retrieve FlightLine from Flight for removal") + return + self.flight.remove_child(line.proxied, line.row(), confirm=False) self.log.debug("Removed line: start={start}, " "stop={stop}, label={label}" - .format(start=info.start, stop=info.stop, - label=info.label)) + .format(start=start, stop=stop, + label=update.label)) else: - line = types.FlightLine(info.start, info.stop, uid=info.uid) - self.flight.add_line(line) + line = FlightLine(start, stop, 0, uid=update.uid) + # line = types.FlightLine(update.start, update.stop, uid=update.uid) + self.flight.add_child(line) self.log.debug("Added line to flight {flt}: start={start}, " "stop={stop}, label={label}, uid={uid}" - .format(flt=self.flight.name, start=info.start, - stop=info.stop, label=info.label, + .format(flt=self.flight.name, start=start, + stop=stop, label=update.label, uid=line.uid)) - - def _on_channel_changed(self, new: int, channel: types.DataChannel): - self.plot.remove_series(channel.series()) - if new != -1: - try: - self.plot.add_series(channel.series(), new) - except: - self.log.exception("Error adding series to plot") - self.model.update() - - def _too_many_children(self, uid): - self.log.warning("Too many children for plot: {}".format(uid)) diff --git a/dgp/lib/types.py b/dgp/lib/types.py index c8c350d..d46279d 100644 --- a/dgp/lib/types.py +++ b/dgp/lib/types.py @@ -32,7 +32,7 @@ DataCurve = namedtuple('DataCurve', ['channel', 'data']) -LineUpdate = namedtuple('LineUpdate', ['flight_id', 'action', 'uid', 'start', +LineUpdate = namedtuple('LineUpdate', ['action', 'uid', 'start', 'stop', 'label']) From 900feff2b9d1a0845f798ebad88bfdfd1a13f28e Mon Sep 17 00:00:00 2001 From: Zachery Brady Date: Sun, 1 Jul 2018 18:48:08 -0600 Subject: [PATCH 121/236] Add properties to base project model classes for access/editing Update serialization/de-serialization methods --- dgp/core/models/data.py | 10 ++++++---- dgp/core/models/flight.py | 36 +++++++++++++++++++++++++----------- dgp/core/models/project.py | 35 +++++++++++++++++++++++------------ dgp/core/oid.py | 15 --------------- 4 files changed, 54 insertions(+), 42 deletions(-) diff --git a/dgp/core/models/data.py b/dgp/core/models/data.py index 715f816..4d8e4cf 100644 --- a/dgp/core/models/data.py +++ b/dgp/core/models/data.py @@ -10,14 +10,16 @@ class DataFile: __slots__ = ('_parent', '_uid', '_date', '_name', '_group', '_source_path', '_column_format') - def __init__(self, parent: str, group: str, date: datetime, source_path: Optional[Path] = None, - column_format=None, uid: Optional[str] = None): + # TODO: Have a set_parent() method instead of passing it in init + # Allow the flight add_child method to set it. Need to consider how this would affect serialization + def __init__(self, parent: str, group: str, date: datetime, name: str = None, + source_path: Optional[Path] = None, column_format=None, uid: Optional[OID] = None): self._parent = parent self._uid = uid or OID(self) self._uid.set_pointer(self) - self._group = group + self._group = group.lower() self._date = date - self._source_path = source_path + self._source_path = Path(source_path) if self._source_path is not None: self._name = self._source_path.name else: diff --git a/dgp/core/models/flight.py b/dgp/core/models/flight.py index 31f8474..5615820 100644 --- a/dgp/core/models/flight.py +++ b/dgp/core/models/flight.py @@ -8,42 +8,51 @@ class FlightLine: - __slots__ = '_uid', '_start', '_stop', '_sequence' + __slots__ = '_uid', '_label', '_start', '_stop', '_sequence' def __init__(self, start: float, stop: float, sequence: int, - uid: Optional[OID] = None): + label: Optional[str] = "", uid: Optional[OID] = None): self._uid = uid or OID(self) self._uid.set_pointer(self) self._start = start self._stop = stop self._sequence = sequence + self._label = label @property def uid(self) -> OID: return self._uid @property - def start(self) -> float: - return self._start + def start(self) -> datetime: + return datetime.fromtimestamp(self._start) @start.setter def start(self, value: float) -> None: self._start = value @property - def stop(self) -> float: - return self._stop + def stop(self) -> datetime: + return datetime.fromtimestamp(self._stop) @stop.setter def stop(self, value: float) -> None: self._stop = value + @property + def label(self) -> str: + return self._label + + @label.setter + def label(self, value: str) -> None: + self._label = value + @property def sequence(self) -> int: return self._sequence def __str__(self): - return "Line %d :: %.4f (start) %.4f (end)" % (self.sequence, self.start, self.stop) + return 'Line {} {:%H:%M} -> {:%H:%M}'.format(self.sequence, self.start, self.stop) class Flight: @@ -52,11 +61,12 @@ class Flight: Define a Flight class used to record and associate data with an entire survey flight (takeoff -> landing) """ - __slots__ = ('_uid', '_name', '_flight_lines', '_data_files', '_meters', '_date', + __slots__ = ('_uid', '_name', '_flight_lines', '_data_files', '_meter', '_date', '_notes', '_sequence', '_duration') def __init__(self, name: str, date: Optional[datetime] = None, notes: Optional[str] = None, - sequence: int = 0, duration: int = 0, uid: Optional[OID] = None, **kwargs): + sequence: int = 0, duration: int = 0, meter: str = None, + uid: Optional[OID] = None, **kwargs): self._uid = uid or OID(self, name) self._uid.set_pointer(self) self._name = name @@ -67,7 +77,8 @@ def __init__(self, name: str, date: Optional[datetime] = None, notes: Optional[s self._flight_lines = kwargs.get('flight_lines', []) # type: List[FlightLine] self._data_files = kwargs.get('data_files', []) # type: List[DataFile] - self._meters = kwargs.get('meters', []) # type: List[OID] + # String UID reference of assigned meter + self._meter: str = meter @property def name(self) -> str: @@ -122,12 +133,15 @@ def flight_lines(self) -> List[FlightLine]: return self._flight_lines def add_child(self, child: Union[FlightLine, DataFile, Gravimeter]) -> None: + if child is None: + print("Child is None, skipping.") + return if isinstance(child, FlightLine): self._flight_lines.append(child) elif isinstance(child, DataFile): self._data_files.append(child) elif isinstance(child, Gravimeter): - raise NotImplementedError("Meter Config Children not yet implemented") + self._meter = child.uid.base_uuid else: raise ValueError("Invalid child type supplied: <%s>" % str(type(child))) diff --git a/dgp/core/models/project.py b/dgp/core/models/project.py index 1ea7ab1..93c8c79 100644 --- a/dgp/core/models/project.py +++ b/dgp/core/models/project.py @@ -6,7 +6,7 @@ """ import json -from datetime import datetime +import datetime from pathlib import Path from pprint import pprint from typing import Optional, List, Any, Dict, Union @@ -43,19 +43,26 @@ def default(self, o: Any): attrs = {key.lstrip('_'): getattr(o, key) for key in keys} attrs['_type'] = o.__class__.__name__ return attrs + j_complex = {'_type': o.__class__.__name__} if isinstance(o, OID): - return {'_type': OID.__name__, 'base_uuid': o.base_uuid} + j_complex['base_uuid'] = o.base_uuid + return j_complex if isinstance(o, Path): - return {'_type': Path.__name__, 'path': str(o.resolve())} - if isinstance(o, datetime): - return {'_type': datetime.__name__, 'timestamp': o.timestamp()} + # Path requires special handling due to OS dependant internal classes + return {'_type': 'Path', 'path': str(o.resolve())} + if isinstance(o, datetime.datetime): + j_complex['timestamp'] = o.timestamp() + return j_complex + if isinstance(o, datetime.date): + j_complex['ordinal'] = o.toordinal() + return j_complex return super().default(o) class GravityProject: def __init__(self, name: str, path: Union[Path, str], description: Optional[str] = None, - create_date: Optional[datetime] = None, modify_date: Optional[datetime] = None, + create_date: Optional[datetime.datetime] = None, modify_date: Optional[datetime.datetime] = None, uid: Optional[str] = None, **kwargs): self._uid = uid or OID(self, tag=name) self._uid.set_pointer(self) @@ -63,7 +70,7 @@ def __init__(self, name: str, path: Union[Path, str], description: Optional[str] self._path = path self._projectfile = 'dgp.json' self._description = description - self._create_date = create_date or datetime.utcnow() + self._create_date = create_date or datetime.datetime.utcnow() self._modify_date = modify_date or self._create_date self._gravimeters = kwargs.get('gravimeters', []) # type: List[Gravimeter] @@ -96,11 +103,11 @@ def description(self, value: str): self._modify() @property - def creation_time(self) -> datetime: + def creation_time(self) -> datetime.datetime: return self._create_date @property - def modify_time(self) -> datetime: + def modify_time(self) -> datetime.datetime: return self._modify_date @property @@ -152,7 +159,7 @@ def __getitem__(self, item): # Protected utility methods def _modify(self): """Set the modify_date to now""" - self._modify_date = datetime.utcnow() + self._modify_date = datetime.datetime.utcnow() # Serialization/De-Serialization methods @classmethod @@ -180,8 +187,10 @@ def object_hook(cls, json_o: Dict): return cls(**params) elif _type == OID.__name__: return OID(**params) - elif _type == datetime.__name__: - return datetime.fromtimestamp(*params.values()) + elif _type == datetime.datetime.__name__: + return datetime.datetime.fromtimestamp(*params.values()) + elif _type == datetime.date.__name__: + return datetime.date.fromordinal(*params.values()) elif _type == Path.__name__: return Path(*params.values()) else: @@ -196,6 +205,8 @@ def from_json(cls, json_str: str) -> 'GravityProject': return json.loads(json_str, object_hook=cls.object_hook) def to_json(self, to_file=False, indent=None) -> Union[str, bool]: + # TODO: Dump file to a temp file, then if successful overwrite the original + # Else an error in the serialization process can corrupt the entire project if to_file: try: with self.path.joinpath(self._projectfile).open('w') as fp: diff --git a/dgp/core/oid.py b/dgp/core/oid.py index 421d37a..20430fc 100644 --- a/dgp/core/oid.py +++ b/dgp/core/oid.py @@ -3,12 +3,6 @@ from typing import Optional, Union, Any from uuid import uuid4 -_registry = {} - - -def get_oid(uuid: str): - pass - class OID: """Object IDentifier - Replacing simple str UUID's that had been used. @@ -21,7 +15,6 @@ def __init__(self, obj: Optional[Any] = None, tag: Optional[str] = None, base_uu self._base_uuid = base_uuid or uuid4().hex self._tag = tag self._pointer = obj - _registry[self._base_uuid] = self def set_pointer(self, obj): self._pointer = obj @@ -64,11 +57,3 @@ def __eq__(self, other: Union['OID', str]) -> bool: def __hash__(self): return hash(self.base_uuid) - - def __del__(self): - try: - del _registry[self.base_uuid] - except KeyError: - pass - else: - pass From 4fa20f012ea860a44d1bed978a47d9cd357d01f3 Mon Sep 17 00:00:00 2001 From: Zachery Brady Date: Mon, 2 Jul 2018 15:58:40 -0600 Subject: [PATCH 122/236] Enable reference linking in JSON output Improved JSON deserialization method to allow for circular references to parent project items. ProjectDecoder/Encoder now serialize/de-serialize from an OID reference to a higher-level item in the project hierarchy, this allows us to concretely set the parent of a particular item (Flight, FlightLine, DataFile etc.) and retain the state through serialization. Added/improved tests for Project Models and HDFStore controller. --- dgp/core/controllers/controller_interfaces.py | 57 +++++- dgp/core/controllers/controller_mixins.py | 26 ++- dgp/core/controllers/datafile_controller.py | 30 ++- dgp/core/controllers/flight_controller.py | 173 ++++++++++------ dgp/core/controllers/flightline_controller.py | 19 +- dgp/core/controllers/gravimeter_controller.py | 22 +- dgp/core/controllers/hdf5_controller.py | 10 +- dgp/core/controllers/project_containers.py | 11 +- dgp/core/controllers/project_controllers.py | 190 ++++++------------ dgp/core/models/data.py | 26 ++- dgp/core/models/flight.py | 18 +- dgp/core/models/meter.py | 49 +++-- dgp/core/models/project.py | 156 +++++++++----- tests/test_datastore.py | 48 +++-- tests/test_project_controllers.py | 30 ++- tests/test_project_models.py | 76 +++++-- 16 files changed, 567 insertions(+), 374 deletions(-) diff --git a/dgp/core/controllers/controller_interfaces.py b/dgp/core/controllers/controller_interfaces.py index 05b4c22..f60d101 100644 --- a/dgp/core/controllers/controller_interfaces.py +++ b/dgp/core/controllers/controller_interfaces.py @@ -1,8 +1,12 @@ # -*- coding: utf-8 -*- -from typing import Any +from pathlib import Path +from typing import Any, Union, Optional -from PyQt5.QtGui import QStandardItem +from PyQt5.QtGui import QStandardItem, QStandardItemModel +from pandas import DataFrame +from dgp.core.controllers.controller_mixins import AttributeProxy +from dgp.core.oid import OID from dgp.core.types.enumerations import DataTypes @@ -13,13 +17,39 @@ """ -class IBaseController(QStandardItem): +class IChild: + def get_parent(self): + raise NotImplementedError + + def set_parent(self, parent) -> None: + raise NotImplementedError + + +class IParent: + def add_child(self, child) -> None: + raise NotImplementedError + + def remove_child(self, child, row: int) -> None: + raise NotImplementedError + + def get_child(self, uid: Union[str, OID]) -> IChild: + raise NotImplementedError + + +class IBaseController(QStandardItem, AttributeProxy): + @property + def uid(self) -> OID: + raise NotImplementedError + def add_child(self, child): raise NotImplementedError def remove_child(self, child, row: int, confirm: bool = True): raise NotImplementedError + def get_child(self, uid): + raise NotImplementedError + def set_active_child(self, child, emit: bool = True): raise NotImplementedError @@ -34,25 +64,30 @@ def add_flight(self): def add_gravimeter(self): raise NotImplementedError - def load_file(self, datatype: DataTypes): + def load_file(self, datatype: DataTypes, destination: Optional['IFlightController'] = None): raise NotImplementedError - def set_parent(self, parent): + @property + def hdf5store(self): raise NotImplementedError @property - def flight_model(self): + def path(self) -> Path: raise NotImplementedError @property - def meter_model(self): + def flight_model(self) -> QStandardItemModel: raise NotImplementedError - -class IFlightController(IBaseController): - def set_name(self, name: str, interactive: bool = False): + @property + def meter_model(self) -> QStandardItemModel: raise NotImplementedError - def set_attr(self, key: str, value: Any) -> None: + +class IFlightController(IBaseController, IParent, IChild): + def load_data(self, datafile) -> DataFrame: raise NotImplementedError + +class IMeterController(IBaseController, IChild): + pass diff --git a/dgp/core/controllers/controller_mixins.py b/dgp/core/controllers/controller_mixins.py index d3bf097..a06bc30 100644 --- a/dgp/core/controllers/controller_mixins.py +++ b/dgp/core/controllers/controller_mixins.py @@ -2,18 +2,38 @@ from typing import Any -class PropertiesProxy: +class AttributeProxy: """ This mixin provides an interface to selectively allow getattr calls against the - proxied or underlying object in a wrapper class. getattr returns sucessfully only + proxied or underlying object in a wrapper class. getattr returns successfully only for attributes decorated with @property in the proxied instance. """ + @property def proxied(self) -> object: raise NotImplementedError + def update(self): + """Called when an attribute is set, use this to update UI values as necessary""" + raise NotImplementedError + + def get_attr(self, key: str) -> Any: + klass = self.proxied.__class__ + if key in klass.__dict__ and isinstance(klass.__dict__[key], property): + return getattr(self.proxied, key) + + def set_attr(self, key: str, value: Any): + attrs = self.proxied.__class__.__dict__ + if key in attrs and isinstance(attrs[key], property): + setattr(self.proxied, key, value) + self.update() + else: + raise AttributeError("Attribute {!s} does not exist or is private on class {!s}" + .format(key, self.proxied.__class__.__name__)) + def __getattr__(self, key: str): + # TODO: This fails if the property is defined in a super-class klass = self.proxied.__class__ if key in klass.__dict__ and isinstance(klass.__dict__[key], property): return getattr(self.proxied, key) - raise AttributeError(klass.__name__ + " has not public attribute %s" % key) + raise AttributeError(klass.__name__ + " has no public attribute %s" % key) diff --git a/dgp/core/controllers/datafile_controller.py b/dgp/core/controllers/datafile_controller.py index df52e59..b37fe09 100644 --- a/dgp/core/controllers/datafile_controller.py +++ b/dgp/core/controllers/datafile_controller.py @@ -1,9 +1,10 @@ # -*- coding: utf-8 -*- +import logging from PyQt5.QtCore import Qt from PyQt5.QtGui import QStandardItem, QIcon, QColor, QBrush from dgp.core.controllers.controller_interfaces import IFlightController -from dgp.core.controllers.controller_mixins import PropertiesProxy +from dgp.core.controllers.controller_mixins import AttributeProxy from dgp.core.models.data import DataFile @@ -11,11 +12,13 @@ GPS_ICON = ":/icons/gps" -class DataFileController(QStandardItem, PropertiesProxy): +class DataFileController(QStandardItem, AttributeProxy): def __init__(self, datafile: DataFile, controller: IFlightController): super().__init__() self._datafile = datafile - self._controller: IFlightController = controller + self._flight_ctrl: IFlightController = controller + self.log = logging.getLogger(__name__) + self.setText(self._datafile.label) self.setToolTip("Source Path: " + str(self._datafile.source_path)) self.setData(self._datafile, role=Qt.UserRole) @@ -25,11 +28,16 @@ def __init__(self, datafile: DataFile, controller: IFlightController): self.setIcon(QIcon(GPS_ICON)) self._bindings = [ + ('addAction', ('Set Active', self._activate)), + ('addAction', ('Describe', self._describe)), ('addAction', ('Delete <%s>' % self._datafile, - lambda: self._controller.remove_child(self._datafile, self.row()))), - ('addAction', ('Set Active', self._activate)) + lambda: self.flight.remove_child(self._datafile, self.row()))) ] + @property + def flight(self) -> IFlightController: + return self._flight_ctrl + @property def menu_bindings(self): return self._bindings @@ -43,10 +51,20 @@ def proxied(self) -> object: return self._datafile def _activate(self): - self._controller.set_active_child(self) + self.flight.set_active_child(self) + + def _describe(self): + df = self.flight.load_data(self) + self.log.debug(df.describe()) def set_active(self): self.setBackground(QBrush(QColor("#85acea"))) def set_inactive(self): self.setBackground(QBrush(QColor("white"))) + + def get_data(self): + try: + return self.flight.load_data(self) + except IOError: + return None diff --git a/dgp/core/controllers/flight_controller.py b/dgp/core/controllers/flight_controller.py index 03a5b9f..dcfd6ac 100644 --- a/dgp/core/controllers/flight_controller.py +++ b/dgp/core/controllers/flight_controller.py @@ -1,26 +1,28 @@ # -*- coding: utf-8 -*- import logging -from typing import Optional, Union, Any +from typing import Optional, Union, Any, Generator from PyQt5.QtCore import Qt -from PyQt5.QtGui import QStandardItem, QIcon, QStandardItemModel +from PyQt5.QtGui import QStandardItemModel, QStandardItem +from pandas import DataFrame +from dgp.core.oid import OID from dgp.core.controllers.controller_interfaces import IAirborneController, IFlightController from dgp.core.controllers.datafile_controller import DataFileController from dgp.core.controllers.flightline_controller import FlightLineController -from dgp.core.controllers.controller_mixins import PropertiesProxy -from gui.dialog.add_flight_dialog import AddFlightDialog -from . import controller_helpers as helpers -from .project_containers import ProjectFolder +from dgp.core.models.meter import Gravimeter from dgp.core.models.flight import Flight, FlightLine from dgp.core.models.data import DataFile +from dgp.core.types.enumerations import DataTypes +from dgp.gui.dialog.add_flight_dialog import AddFlightDialog +from . import controller_helpers as helpers +from .project_containers import ProjectFolder -from core.types.enumerations import DataTypes FOLDER_ICON = ":/icons/folder_open.png" -class FlightController(IFlightController, PropertiesProxy): +class FlightController(IFlightController): """ FlightController is a wrapper around :obj:`Flight` objects, and provides a presentation and interaction layer for use of the underlying Flight @@ -41,61 +43,70 @@ class FlightController(IFlightController, PropertiesProxy): """ inherit_context = True - def __init__(self, flight: Flight, icon: Optional[str] = None, - controller: IAirborneController = None): + def __init__(self, flight: Flight, parent: IAirborneController = None): """Assemble the view/controller repr from the base flight object.""" super().__init__() self.log = logging.getLogger(__name__) - self._flight = flight + self._flight: Flight = flight + self._parent = parent self.setData(flight, Qt.UserRole) - if icon is not None: - self.setIcon(QIcon(icon)) self.setEditable(False) - self._project_controller = controller self._active = False self._flight_lines = ProjectFolder("Flight Lines", FOLDER_ICON) self._data_files = ProjectFolder("Data Files", FOLDER_ICON) + self._sensors = ProjectFolder("Sensors", FOLDER_ICON) self.appendRow(self._flight_lines) self.appendRow(self._data_files) + self.appendRow(self._sensors) + + self._data_model = QStandardItemModel() for line in self._flight.flight_lines: self._flight_lines.appendRow(FlightLineController(line, self)) - for file in self._flight.data_files: + for file in self._flight.data_files: # type: DataFile self._data_files.appendRow(DataFileController(file, self)) - # Think about multiple files, what to do? - self._active_gravity = None - self._active_trajectory = None + self._active_gravity: DataFileController = None + self._active_trajectory: DataFileController = None + # Set the first available gravity/trajectory file to active + for file_ctrl in self._data_files.items(): # type: DataFileController + if self._active_gravity is None and file_ctrl.data_group == 'gravity': + self.set_active_child(file_ctrl) + if self._active_trajectory is None and file_ctrl.data_group == 'trajectory': + self.set_active_child(file_ctrl) + + # TODO: Consider adding MenuPrototype class which could provide the means to build QMenu self._bindings = [ - ('addAction', ('Set Active', lambda: self.controller.set_active_child(self))), + ('addAction', ('Set Active', lambda: self.get_parent().set_active_child(self))), ('addAction', ('Import Gravity', - lambda: self.controller.load_file(DataTypes.GRAVITY))), + lambda: self.get_parent().load_file(DataTypes.GRAVITY, self))), ('addAction', ('Import Trajectory', - lambda: self.controller.load_file(DataTypes.TRAJECTORY))), + lambda: self.get_parent().load_file(DataTypes.TRAJECTORY, self))), ('addSeparator', ()), ('addAction', ('Delete <%s>' % self._flight.name, - lambda: self.controller.remove_child(self._flight, self.row(), True))), - ('addAction', ('Rename Flight', lambda: self.set_name(interactive=True))), + lambda: self.get_parent().remove_child(self._flight, self.row(), True))), + ('addAction', ('Rename Flight', lambda: self.set_name())), ('addAction', ('Properties', - lambda: AddFlightDialog.from_existing(self, self.controller).exec_())) + lambda: AddFlightDialog.from_existing(self, self.get_parent()).exec_())) ] self.update() - def update(self): - self.setText(self._flight.name) - self.setToolTip(str(self._flight.uid)) + @property + def uid(self) -> OID: + return self._flight.uid - def clone(self): - return FlightController(self._flight, controller=self.controller) + @property + def proxied(self) -> object: + return self._flight @property - def controller(self) -> IAirborneController: - return self._project_controller + def data_model(self) -> QStandardItemModel: + return self._data_model @property def menu_bindings(self): @@ -110,11 +121,17 @@ def menu_bindings(self): @property def gravity(self): - return None + if not self._active_gravity: + self.log.warning("No gravity file is set to active state.") + return None + return self._active_gravity.get_data() @property def trajectory(self): - return None + if self._active_trajectory is None: + self.log.warning("No trajectory file is set to active state.") + return None + return self._active_trajectory.get_data() @property def lines_model(self) -> QStandardItemModel: @@ -123,20 +140,26 @@ def lines_model(self) -> QStandardItemModel: """ return self._flight_lines.internal_model - def is_active(self): - return self.controller.get_active_child() == self + @property + def lines(self) -> Generator[FlightLine, None, None]: + for line in self._flight.flight_lines: + yield line - def properties(self): - for i in range(self._data_files.rowCount()): - file = self._data_files.child(i) - if file._data.group == 'gravity': - print(file) - break - print(self.__class__.__name__) + def get_parent(self) -> IAirborneController: + return self._parent - @property - def proxied(self) -> object: - return self._flight + def set_parent(self, parent: IAirborneController) -> None: + self._parent = parent + + def update(self): + self.setText(self._flight.name) + self.setToolTip(str(self._flight.uid)) + + def clone(self): + return FlightController(self._flight, parent=self.get_parent()) + + def is_active(self): + return self.get_parent().get_active_child() == self def set_active_child(self, child: DataFileController, emit: bool = True): if not isinstance(child, DataFileController): @@ -148,13 +171,26 @@ def set_active_child(self, child: DataFileController, emit: bool = True): if ci.data_group == child.data_group: ci.set_inactive() - print(child.data_group) if child.data_group == 'gravity': - self._active_gravity = child.data(Qt.UserRole) + df = self.load_data(child) + if df is None: + return + self._active_gravity = child child.set_active() - print("Set gravity child to active") + + # Experimental work on channel model + # TODO: Need a way to clear ONLY the appropriate channels from the model, not all + # e.g. don't clear trajectory channels when gravity file is changed + self.data_model.clear() + + for col in df: + channel = QStandardItem(col) + channel.setData(df[col], Qt.UserRole) + channel.setCheckable(True) + self._data_model.appendRow([channel, QStandardItem("Plot1"), QStandardItem("Plot2")]) + if child.data_group == 'trajectory': - self._active_trajectory = child.data(Qt.UserRole) + self._active_trajectory = child child.set_active() def get_active_child(self): @@ -180,7 +216,11 @@ def add_child(self, child: Union[FlightLine, DataFile]) -> bool: if isinstance(child, FlightLine): self._flight_lines.appendRow(FlightLineController(child, self)) elif isinstance(child, DataFile): - self._data_files.appendRow(DataFileController(child, self)) + control = DataFileController(child, self) + self._data_files.appendRow(control) + # self.set_active_child(control) + elif isinstance(child, Gravimeter): + self.log.warning("Adding Gravimeter's to Flights is not yet implemented.") else: self.log.warning("Child of type %s could not be added to flight.", str(type(child))) return False @@ -214,7 +254,7 @@ def remove_child(self, child: Union[FlightLine, DataFile], row: int, confirm: bo if confirm: if not helpers.confirm_action("Confirm Deletion", "Are you sure you want to delete %s" % str(child), - self.controller.get_parent()): + self.get_parent().get_parent()): return False if not self._flight.remove_child(child): @@ -228,20 +268,25 @@ def remove_child(self, child: Union[FlightLine, DataFile], row: int, confirm: bo return False return True - # TODO: Can't test this - def set_name(self, name: str = None, interactive=False): - if interactive: - name = helpers.get_input("Set Name", "Enter a new name:", self._flight.name) + def get_child(self, uid: Union[str, OID]) -> Union[FlightLineController, None]: + """Retrieve a child controller by UIU + A string base_uuid can be passed, or an :obj:`OID` object for comparison + """ + # TODO: Should this also search datafiles? + for item in self._flight_lines.items(): # type: FlightLineController + if item.uid == uid: + return item + + def load_data(self, datafile: DataFileController) -> DataFrame: + try: + return self.get_parent().hdf5store.load_data(datafile.data(Qt.UserRole)) + except OSError: + return None + + def set_name(self): + name: str = helpers.get_input("Set Name", "Enter a new name:", self._flight.name) if name: - self._flight.name = name - self.update() - - def set_attr(self, key: str, value: Any): - if key in Flight.__dict__ and isinstance(Flight.__dict__[key], property): - setattr(self._flight, key, value) - self.update() - else: - raise AttributeError("Attribute %s cannot be set for flight <%s>" % (key, str(self._flight))) + self.set_attr('name', name) def __hash__(self): return hash(self._flight.uid) diff --git a/dgp/core/controllers/flightline_controller.py b/dgp/core/controllers/flightline_controller.py index 740f6b1..c7c2672 100644 --- a/dgp/core/controllers/flightline_controller.py +++ b/dgp/core/controllers/flightline_controller.py @@ -1,28 +1,35 @@ # -*- coding: utf-8 -*- +from typing import Optional + from PyQt5.QtCore import Qt from PyQt5.QtGui import QStandardItem, QIcon -from dgp.core.controllers.controller_interfaces import IBaseController -from dgp.core.controllers.controller_mixins import PropertiesProxy +from dgp.core.controllers.controller_interfaces import IFlightController +from dgp.core.controllers.controller_mixins import AttributeProxy from dgp.core.models.flight import FlightLine -class FlightLineController(QStandardItem, PropertiesProxy): +class FlightLineController(QStandardItem, AttributeProxy): - def __init__(self, flightline: FlightLine, controller: IBaseController): + def __init__(self, flightline: FlightLine, controller: IFlightController): super().__init__() self._flightline = flightline - self._controller: IBaseController = controller + self._flight_ctrl: IFlightController = controller self.setData(flightline, Qt.UserRole) self.setText(str(self._flightline)) self.setIcon(QIcon(":/icons/AutosizeStretch_16x.png")) + @property + def flight(self) -> IFlightController: + return self._flight_ctrl + @property def proxied(self) -> FlightLine: return self._flightline - def update_line(self, start, stop): + def update_line(self, start, stop, label: Optional[str] = None): self._flightline.start = start self._flightline.stop = stop + self._flightline.label = label self.setText(str(self._flightline)) diff --git a/dgp/core/controllers/gravimeter_controller.py b/dgp/core/controllers/gravimeter_controller.py index d3f9ad0..9fe56ac 100644 --- a/dgp/core/controllers/gravimeter_controller.py +++ b/dgp/core/controllers/gravimeter_controller.py @@ -2,34 +2,34 @@ from PyQt5.QtCore import Qt from PyQt5.QtGui import QStandardItem +from dgp.core.controllers.controller_interfaces import IAirborneController from dgp.core.controllers.controller_helpers import get_input -from dgp.core.controllers.controller_mixins import PropertiesProxy +from dgp.core.controllers.controller_mixins import AttributeProxy from dgp.core.models.meter import Gravimeter -class GravimeterController(QStandardItem, PropertiesProxy): - def __init__(self, meter: Gravimeter, - controller=None): +class GravimeterController(QStandardItem, AttributeProxy): + def __init__(self, meter: Gravimeter, parent: IAirborneController): super().__init__(meter.name) self.setEditable(False) self.setData(meter, role=Qt.UserRole) self._meter: Gravimeter = meter - self._project_controller = controller + self._project_controller = parent self._bindings = [ ('addAction', ('Delete <%s>' % self._meter.name, - (lambda: self.controller.remove_child(self._meter, self.row(), True)))), + (lambda: self.project.remove_child(self._meter, self.row(), True)))), ('addAction', ('Rename', self.set_name)) ] @property - def proxied(self) -> object: - return self._meter + def project(self) -> IAirborneController: + return self._project_controller @property - def controller(self): - return self._project_controller + def proxied(self) -> object: + return self._meter @property def menu_bindings(self): @@ -42,7 +42,7 @@ def set_name(self): self.setData(name, role=Qt.DisplayRole) def clone(self): - return GravimeterController(self._meter, self._project_controller) + return GravimeterController(self._meter, self.project) def add_child(self, child) -> None: raise ValueError("Gravimeter does not support child objects.") diff --git a/dgp/core/controllers/hdf5_controller.py b/dgp/core/controllers/hdf5_controller.py index a7c334e..87ac6e2 100644 --- a/dgp/core/controllers/hdf5_controller.py +++ b/dgp/core/controllers/hdf5_controller.py @@ -62,6 +62,8 @@ def join_path(flightid, grpid, uid): def save_data(self, data: DataFrame, datafile: DataFile): """ Save a Pandas Series or DataFrame to the HDF5 Store + + TODO: This doc is outdated Data is added to the local cache, keyed by its generated UID. The generated UID is passed back to the caller for later reference. This function serves as a dispatch mechanism for different data types. @@ -128,8 +130,12 @@ def load_data(self, datafile: DataFile) -> DataFrame: else: self.log.debug("Loading data %s from hdf5 _store.", datafile.hdfpath) - with HDFStore(str(self.hdf5path)) as hdf: - data = hdf.get(datafile.hdfpath) + try: + with HDFStore(str(self.hdf5path)) as hdf: + data = hdf.get(datafile.hdfpath) + except Exception as e: + self.log.exception(e) + raise IOError("Could not load DataFrame from path: %s" % datafile.hdfpath) # Cache the data self._cache[datafile] = data diff --git a/dgp/core/controllers/project_containers.py b/dgp/core/controllers/project_containers.py index 5fe2280..3da8f41 100644 --- a/dgp/core/controllers/project_containers.py +++ b/dgp/core/controllers/project_containers.py @@ -1,4 +1,6 @@ # -*- coding: utf-8 -*- +from typing import Generator + from PyQt5.QtGui import QStandardItem, QStandardItemModel, QIcon @@ -10,6 +12,10 @@ class ProjectFolder(QStandardItem): The ProjectFolder (QStandardItem) appends the source item to itself for display in a view, a clone of the item is created and also added to an internal QStandardItemModel for + + Notes + ----- + Overriding object methods like __getitem__ __iter__ etc seems to break """ inherit_context = False @@ -43,6 +49,7 @@ def removeRow(self, row: int): super().removeRow(row) self._model.removeRow(row) - def __iter__(self): - pass + def items(self) -> Generator[QStandardItem, None, None]: + return (self.child(i, 0) for i in range(self.rowCount())) + diff --git a/dgp/core/controllers/project_controllers.py b/dgp/core/controllers/project_controllers.py index 7acd0d7..da88c90 100644 --- a/dgp/core/controllers/project_controllers.py +++ b/dgp/core/controllers/project_controllers.py @@ -1,26 +1,27 @@ # -*- coding: utf-8 -*- import functools import inspect +import itertools import logging import shlex import sys from pathlib import Path -from weakref import WeakSet +from pprint import pprint from typing import Optional, Union, Generator, Callable, Any -from PyQt5.QtCore import Qt, QProcess, QThread, pyqtSignal, QObject, pyqtSlot +from PyQt5.QtCore import Qt, QProcess, QThread, pyqtSignal, QObject from PyQt5.QtGui import QStandardItem, QBrush, QColor, QStandardItemModel, QIcon from PyQt5.QtWidgets import QWidget from pandas import DataFrame -from dgp.core.controllers.controller_interfaces import IAirborneController -from . import project_containers +from dgp.core.oid import OID +from dgp.core.controllers.controller_interfaces import IAirborneController, IFlightController from .hdf5_controller import HDFController from .flight_controller import FlightController from .gravimeter_controller import GravimeterController from .project_containers import ProjectFolder -from .controller_helpers import confirm_action -from dgp.core.controllers.controller_mixins import PropertiesProxy +from .controller_helpers import confirm_action, get_input +from dgp.core.controllers.controller_mixins import AttributeProxy from dgp.gui.dialog.add_flight_dialog import AddFlightDialog from dgp.gui.dialog.add_gravimeter_dialog import AddGravimeterDialog from dgp.gui.dialog.data_import_dialog import DataImportDialog @@ -45,6 +46,7 @@ class FileLoader(QThread): def __init__(self, path: Path, method: Callable, parent, **kwargs): super().__init__(parent=parent) + self.log = logging.getLogger(__name__) self._path = Path(path) self._method = method self._kwargs = kwargs @@ -55,12 +57,13 @@ def run(self): kwargs = {k: v for k, v in self._kwargs.items() if k in sig.parameters} result = self._method(str(self._path), **kwargs) except Exception as e: + self.log.exception("Error loading datafile: %s" % str(self._path)) self.error.emit(str(e)) else: self.completed.emit(result, self._path) -class AirborneProjectController(IAirborneController, PropertiesProxy): +class AirborneProjectController(IAirborneController, AttributeProxy): def __init__(self, project: AirborneProject, parent: QObject = None): super().__init__(project.name) self.log = logging.getLogger(__name__) @@ -78,17 +81,12 @@ def __init__(self, project: AirborneProject, parent: QObject = None): self.meters = ProjectFolder("Gravimeters", MTR_ICON) self.appendRow(self.meters) - self.flight_controls = WeakSet() - self.meter_controls = WeakSet() - for flight in self.project.flights: - controller = FlightController(flight, controller=self) - self.flight_controls.add(controller) + controller = FlightController(flight, parent=self) self.flights.appendRow(controller) for meter in self.project.gravimeters: - controller = GravimeterController(meter, controller=self) - self.meter_controls.add(controller) + controller = GravimeterController(meter, parent=self) self.meters.appendRow(controller) self._bindings = [ @@ -100,14 +98,9 @@ def __init__(self, project: AirborneProject, parent: QObject = None): def proxied(self) -> object: return self._project - def properties(self): - print(self.__class__.__name__) - - def get_parent(self) -> Union[QObject, QWidget, None]: - return self._parent - - def set_parent(self, value: Union[QObject, QWidget]) -> None: - self._parent = value + @property + def path(self) -> Path: + return self._project.path @property def menu_bindings(self): @@ -117,11 +110,6 @@ def menu_bindings(self): def hdf5store(self) -> HDFController: return self._hdfc - @property - def flight_ctrls(self) -> Generator[FlightController, None, None]: - for ctrl in self.flight_controls: - yield ctrl - @property def project(self) -> Union[GravityProject, AirborneProject]: return self._project @@ -134,16 +122,32 @@ def meter_model(self) -> QStandardItemModel: def flight_model(self) -> QStandardItemModel: return self.flights.internal_model - def add_child(self, child: Union[Flight, Gravimeter]): + def properties(self): + print(self.__class__.__name__) + + def get_parent(self) -> Union[QObject, QWidget, None]: + return self._parent + + def set_parent(self, value: Union[QObject, QWidget]) -> None: + self._parent = value + + def set_attr(self, key: str, value: Any): + if key in self.__class__.__dict__ and isinstance(self.__class__.__dict__[key], property): + setattr(self._project, key, value) + self.update() + else: + raise AttributeError("Attribute %s cannot be set for <%s> %s" % ( + key, self.__class__.__name__, self._project.name)) + + def add_child(self, child: Union[Flight, Gravimeter]) -> Union[FlightController, GravimeterController, None]: + print("Adding child to project") self.project.add_child(child) self.update() if isinstance(child, Flight): - controller = FlightController(child, controller=self) - self.flight_controls.add(controller) + controller = FlightController(child, parent=self) self.flights.appendRow(controller) elif isinstance(child, Gravimeter): - controller = GravimeterController(child, controller=self) - self.meter_controls.add(controller) + controller = GravimeterController(child, parent=self) self.meters.appendRow(controller) else: print("Invalid child: " + str(type(child))) @@ -162,30 +166,27 @@ def remove_child(self, child: Union[Flight, Gravimeter], row: int, confirm=True) elif isinstance(child, Gravimeter): self.meters.removeRow(row) - def get_child_controller(self, child: Union[Flight, Gravimeter]): - ctrl_map = {Flight: self.flight_ctrls, Gravimeter: self.meter_controls} - ctrls = ctrl_map.get(type(child), None) - if ctrls is None: - return None - - for ctrl in ctrls: - if ctrl.uid == child.uid: - return ctrl + # TODO: Change this to get_child(uid: OID) ? + def get_child(self, uid: Union[str, OID]) -> Union[FlightController, GravimeterController, + None]: + for child in itertools.chain(self.flights.items(), self.meters.items()): + if child.uid == uid: + return child def get_active_child(self): return self._active - def set_active_child(self, child: FlightController, emit: bool = True): - if isinstance(child, FlightController): + def set_active_child(self, child: IFlightController, emit: bool = True): + if isinstance(child, IFlightController): self._active = child - for ctrl in self.flight_controls: # type: QStandardItem + for ctrl in self.flights.items(): # type: QStandardItem ctrl.setBackground(BASE_COLOR) child.setBackground(ACTIVE_COLOR) if emit: self.model().flight_changed.emit(child) def set_name(self): - new_name = project_containers.get_input("Set Project Name", "Enter a Project Name", self.project.name) + new_name = get_input("Set Project Name", "Enter a Project Name", self.project.name) if new_name: self.project.name = new_name self.setData(new_name, Qt.DisplayRole) @@ -205,6 +206,7 @@ def show_in_explorer(self): QProcess.startDetached(script, shlex.split(args)) + # TODO: What to do about these dialog methods - it feels wrong here def add_flight(self): dlg = AddFlightDialog(project=self, parent=self.get_parent()) return dlg.exec_() @@ -217,28 +219,17 @@ def add_gravimeter(self): def update(self): """Emit an update event from the parent Model, signalling that data has been added/removed/modified in the project.""" - self.model().project_changed.emit() + if self.model() is not None: + self.model().project_changed.emit() def _post_load(self, datafile: DataFile, data: DataFrame): - - - - # try: - # fltid, grpid, uid, path = self.hdf5store.save_data(data, flight.uid.base_uuid, 'gravity') - # except IOError: - # self.log.exception("Error writing data to HDF5 file.") - # else: - # datafile = DataFile(hdfpath=path, label='', group=grpid, source_path=src_path, uid=uid) - # flight.add_child(datafile) - - print(data.describe()) - print("Post_load loading datafile: " + str(datafile)) if self.hdf5store.save_data(data, datafile): - print("Data saved to HDFStore") - + self.log.info("Data imported and saved to HDF5 Store") return # TODO: Implement align_frames functionality as below + # TODO: Consider the implications of multiple data files + # OR: insert align_frames into the transform graph and deal with it there # gravity = flight.gravity # trajectory = flight.trajectory @@ -251,87 +242,28 @@ def _post_load(self, datafile: DataFile, data: DataFrame): # fields = DGS_AT1A_INTERP_FIELDS | TRAJECTORY_INTERP_FIELDS # new_gravity, new_trajectory = align_frames(gravity, trajectory, # interp_only=fields) - # - # # TODO: Fix this mess - # # replace datasource objects - # ds_attr = {'path': gravity.filename, 'dtype': gravity.dtype} - # flight.remove_data(gravity) - # self._add_data(new_gravity, ds_attr['dtype'], flight, - # ds_attr['path']) - # - # ds_attr = {'path': trajectory.filename, - # 'dtype': trajectory.dtype} - # flight.remove_data(trajectory) - # self._add_data(new_trajectory, ds_attr['dtype'], flight, - # ds_attr['path']) - - def load_file(self, datatype: DataTypes = DataTypes.GRAVITY): - def load_data(datafile: DataFile): + + def load_file(self, datatype: DataTypes = DataTypes.GRAVITY, destination: IFlightController = None): + def load_data(datafile: DataFile, params: dict): + pprint(params) if datafile.group == 'gravity': method = read_at1a elif datafile.group == 'trajectory': method = import_trajectory else: + print("Unrecognized data group: " + datafile.group) return - loader = FileLoader(datafile.source_path, method, parent=self.get_parent()) + loader = FileLoader(datafile.source_path, method, parent=self.get_parent(), **params) loader.completed.connect(functools.partial(self._post_load, datafile)) + # TODO: Connect completed to add_child method of the flight loader.start() dlg = DataImportDialog(self, datatype, parent=self.get_parent()) + if destination is not None: + dlg.set_initial_flight(destination) dlg.load.connect(load_data) dlg.exec_() - # Deprecated - dialog will handle - def _load_file(self, ftype: DataTypes, destination: Optional[FlightController] = None, browse=True): - pass - # dialog = DataImportDialog(self, ftype, self.get_parent()) - # dialog.set_initial_flight(self.active_entity) - # if browse: - # dialog.browse() - # - # if dialog.exec_(): - # flt_uid = dialog.flight # type: OID - # fc = self.get_child_controller(flt_uid.reference) - # if fc is None: - # # Error - # return - # - # if ftype == DataTypes.GRAVITY: - # method = read_at1a - # elif ftype == DataTypes.TRAJECTORY: - # method = import_trajectory - # else: - # print("Unknown datatype %s" % str(ftype)) - # return - # # Note loader must be passed a QObject parent or it will crash - # loader = FileLoader(dialog.path, method, parent=self._parent, **dialog.params) - # loader.completed.connect(functools.partial(self._post_load, fc)) - # - # loader.start() - - # self.update() - - # Old code from Main: (for reference) - - # prog = self.show_progress_status(0, 0) - # prog.setValue(1) - - # def _on_err(result): - # err, exc = result - # prog.close() - # if err: - # msg = "Error loading {typ}::{fname}".format( - # typ=dtype.name.capitalize(), fname=params.get('path', '')) - # self.log.error(msg) - # else: - # msg = "Loaded {typ}::{fname}".format( - # typ=dtype.name.capitalize(), fname=params.get('path', '')) - # self.log.info(msg) - # - # ld = loader.get_loader(parent=self, dtype=dtype, on_complete=self._post_load, - # on_error=_on_err, **params) - # ld.start() - def save(self): print("Saving project") return self.project.to_json(indent=2, to_file=True) diff --git a/dgp/core/models/data.py b/dgp/core/models/data.py index 4d8e4cf..5c9fb59 100644 --- a/dgp/core/models/data.py +++ b/dgp/core/models/data.py @@ -10,20 +10,16 @@ class DataFile: __slots__ = ('_parent', '_uid', '_date', '_name', '_group', '_source_path', '_column_format') - # TODO: Have a set_parent() method instead of passing it in init - # Allow the flight add_child method to set it. Need to consider how this would affect serialization - def __init__(self, parent: str, group: str, date: datetime, name: str = None, - source_path: Optional[Path] = None, column_format=None, uid: Optional[OID] = None): + def __init__(self, group: str, date: datetime, source_path: Path, + name: Optional[str] = None, column_format=None, + uid: Optional[OID] = None, parent=None): self._parent = parent self._uid = uid or OID(self) self._uid.set_pointer(self) self._group = group.lower() self._date = date self._source_path = Path(source_path) - if self._source_path is not None: - self._name = self._source_path.name - else: - self._name = self._uid.base_uuid[:8] + self._name = name or self._source_path.name self._column_format = column_format @property @@ -45,14 +41,24 @@ def group(self) -> str: @property def hdfpath(self) -> str: - return '/{parent}/{group}/{uid}'.format(parent=self._parent, - group=self._group, uid=self._uid.base_uuid) + """Construct the HDF5 Node path where the DataFile is stored + + Notes + ----- + An underscore (_) is prepended to the parent and uid ID's to suppress the NaturalNameWarning + generated if the UID begins with a number (invalid Python identifier). + """ + return '/_{parent}/{group}/_{uid}'.format(parent=self._parent.uid.base_uuid, + group=self._group, uid=self._uid.base_uuid) @property def source_path(self) -> Path: if self._source_path is not None: return Path(self._source_path) + def set_parent(self, parent): + self._parent = parent + def __str__(self): return "(%s) :: %s" % (self._group, self.hdfpath) diff --git a/dgp/core/models/flight.py b/dgp/core/models/flight.py index 5615820..85020c1 100644 --- a/dgp/core/models/flight.py +++ b/dgp/core/models/flight.py @@ -8,10 +8,11 @@ class FlightLine: - __slots__ = '_uid', '_label', '_start', '_stop', '_sequence' + __slots__ = ('_uid', '_label', '_start', '_stop', '_sequence', '_parent') def __init__(self, start: float, stop: float, sequence: int, label: Optional[str] = "", uid: Optional[OID] = None): + self._parent = None self._uid = uid or OID(self) self._uid.set_pointer(self) self._start = start @@ -51,6 +52,9 @@ def label(self, value: str) -> None: def sequence(self) -> int: return self._sequence + def set_parent(self, parent): + self._parent = parent + def __str__(self): return 'Line {} {:%H:%M} -> {:%H:%M}'.format(self.sequence, self.start, self.stop) @@ -62,11 +66,12 @@ class Flight: survey flight (takeoff -> landing) """ __slots__ = ('_uid', '_name', '_flight_lines', '_data_files', '_meter', '_date', - '_notes', '_sequence', '_duration') + '_notes', '_sequence', '_duration', '_parent') def __init__(self, name: str, date: Optional[datetime] = None, notes: Optional[str] = None, sequence: int = 0, duration: int = 0, meter: str = None, uid: Optional[OID] = None, **kwargs): + self._parent = None self._uid = uid or OID(self, name) self._uid.set_pointer(self) self._name = name @@ -77,7 +82,6 @@ def __init__(self, name: str, date: Optional[datetime] = None, notes: Optional[s self._flight_lines = kwargs.get('flight_lines', []) # type: List[FlightLine] self._data_files = kwargs.get('data_files', []) # type: List[DataFile] - # String UID reference of assigned meter self._meter: str = meter @property @@ -134,7 +138,6 @@ def flight_lines(self) -> List[FlightLine]: def add_child(self, child: Union[FlightLine, DataFile, Gravimeter]) -> None: if child is None: - print("Child is None, skipping.") return if isinstance(child, FlightLine): self._flight_lines.append(child) @@ -144,19 +147,24 @@ def add_child(self, child: Union[FlightLine, DataFile, Gravimeter]) -> None: self._meter = child.uid.base_uuid else: raise ValueError("Invalid child type supplied: <%s>" % str(type(child))) + child.set_parent(self) def remove_child(self, child: Union[FlightLine, DataFile, OID]) -> bool: if isinstance(child, OID): child = child.reference - if isinstance(child, FlightLine): + child.set_parent(None) self._flight_lines.remove(child) elif isinstance(child, DataFile): + child.set_parent(None) self._data_files.remove(child) else: return False return True + def set_parent(self, parent): + self._parent = parent + def __str__(self) -> str: return self.name diff --git a/dgp/core/models/meter.py b/dgp/core/models/meter.py index b2a1669..de7efe9 100644 --- a/dgp/core/models/meter.py +++ b/dgp/core/models/meter.py @@ -4,15 +4,15 @@ New pure data class for Meter configurations """ import configparser -import os -from typing import Optional +from pathlib import Path +from typing import Optional, Union, Dict from dgp.core.oid import OID sensor_fields = ['g0', 'GravCal', 'LongCal', 'CrossCal', 'LongOffset', 'CrossOffset', 'stempgain', 'Temperature', 'stempoffset', 'pressgain', 'presszero', 'beamgain', 'beamzero', - 'Etempgain', 'Etempzero'] + 'Etempgain', 'Etempzero', 'Meter'] # Cross coupling Fields cc_fields = ['vcc', 've', 'al', 'ax', 'monitors'] @@ -26,6 +26,7 @@ class Gravimeter: def __init__(self, name: str, config: dict = None, uid: Optional[OID] = None, **kwargs): + self._parent = None self._uid = uid or OID(self) self._uid.set_pointer(self) self._type = "AT1A" @@ -63,9 +64,22 @@ def config(self) -> dict: def config(self, value: dict) -> None: self._config = value + def set_parent(self, parent): + self._parent = parent + @staticmethod - def process_config(**config): - """Return a config dictionary by filtering out invalid fields, and lower-casing all keys""" + def read_config(path: Path) -> Dict[str, Union[str, int, float]]: + if not path.exists(): + raise FileNotFoundError + config = configparser.ConfigParser(strict=False) + try: + config.read(str(path)) + except configparser.MissingSectionHeaderError: + return {} + + sensor_fld = dict(config['Sensor']) + xcoupling_fld = dict(config['crosscouplings']) + platform_fld = dict(config['Platform']) def safe_cast(value): try: @@ -73,28 +87,13 @@ def safe_cast(value): except ValueError: return value - return {k.lower(): safe_cast(v) for k, v in config.items() if k.lower() in map(str.lower, valid_fields)} + merged = {**sensor_fld, **xcoupling_fld, **platform_fld} + return {k.lower(): safe_cast(v) for k, v in merged.items() if k.lower() in map(str.lower, valid_fields)} @classmethod - def from_ini(cls, path, name=None): + def from_ini(cls, path: Path, name=None): """ Read an AT1 Meter Configuration from a meter ini file """ - if not os.path.exists(path): - raise OSError("Invalid path to ini.") - config = configparser.ConfigParser(strict=False) - config.read(path) - - sensor_fld = dict(config['Sensor']) - xcoupling_fld = dict(config['crosscouplings']) - platform_fld = dict(config['Platform']) - - name = name or str.strip(sensor_fld['meter'], '"') - - merge_config = {**sensor_fld, **xcoupling_fld, **platform_fld} - clean_config = cls.process_config(**merge_config) - - return cls(name, config=clean_config) - -# TODO: Use sub-classes to define different Meter Types? - + config = cls.read_config(Path(path)) + return cls(name, config=config) diff --git a/dgp/core/models/project.py b/dgp/core/models/project.py index 93c8c79..728b6b3 100644 --- a/dgp/core/models/project.py +++ b/dgp/core/models/project.py @@ -3,18 +3,20 @@ """ Project Classes V2 JSON Serializable classes, separated from the GUI control plane - """ + import json +import json.decoder import datetime from pathlib import Path from pprint import pprint from typing import Optional, List, Any, Dict, Union from dgp.core.oid import OID -from dgp.core.models.flight import Flight, FlightLine, DataFile -from dgp.core.models.meter import Gravimeter +from .flight import Flight, FlightLine, DataFile +from .meter import Gravimeter +PROJECT_FILE_NAME = 'dgp.json' project_entities = {'Flight': Flight, 'FlightLine': FlightLine, 'DataFile': DataFile, 'Gravimeter': Gravimeter} @@ -35,6 +37,13 @@ class ProjectEncoder(json.JSONEncoder): to determine how to decode and reconstruct the object into a Python native object. + The parent/_parent attribute is another special case in the + Serialization/De-serialization of the project. A parent can be set + on any project child object (Flight, FlightLine, DataFile, Gravimeter etc.) + which is simply a reference to the object that contains it within the hierarchy. + As this creates a circular reference, for any _parent attribute of a project + entity, the parent's OID is instead serialized - which allows us to recreate + the structure upon decoding with :obj:`ProjectDecoder` """ def default(self, o: Any): @@ -42,33 +51,123 @@ def default(self, o: Any): keys = o.__slots__ if hasattr(o, '__slots__') else o.__dict__.keys() attrs = {key.lstrip('_'): getattr(o, key) for key in keys} attrs['_type'] = o.__class__.__name__ + if 'parent' in attrs: + # Serialize the UID of the parent, not the parent itself (circular-reference) + attrs['parent'] = getattr(attrs['parent'], 'uid', None) return attrs j_complex = {'_type': o.__class__.__name__} if isinstance(o, OID): j_complex['base_uuid'] = o.base_uuid return j_complex - if isinstance(o, Path): - # Path requires special handling due to OS dependant internal classes - return {'_type': 'Path', 'path': str(o.resolve())} if isinstance(o, datetime.datetime): j_complex['timestamp'] = o.timestamp() return j_complex if isinstance(o, datetime.date): j_complex['ordinal'] = o.toordinal() return j_complex + if isinstance(o, Path): + # Path requires special handling due to OS dependant internal classes + return {'_type': 'Path', 'path': str(o.resolve())} return super().default(o) +class ProjectDecoder(json.JSONDecoder): + """ + ProjectDecoder is a custom JSONDecoder object which enables us to de-serialize + circular references. This is useful in our case as the gravity projects are + represented in a tree-type hierarchy. Objects in the tree keep a reference to + their parent to facilitate a variety of actions. + + The :obj:`ProjectEncoder` serializes any references with the key '_parent' into + a serialized OID type. + + All project entities are decoded and a reference is stored in an internal registry + to facilitate the re-linking of parent/child entities after decoding is complete. + + The decoder (this class), will then inspect each object passed to its object_hook + for a 'parent' attribute (leading _ are stripped); objects with a parent attribute + are added to an internal map, mapping the child's UID to the parent's UID. + + A second pass is made over the decoded project structure due to the way the + JSON is decoded (depth-first), such that the deepest nested children will contain + references to a parent object which has not been decoded yet. + This allows us to store only a single canonical serialized representation of the + parent objects in the hierarchy, and then assemble the references after the fact. + """ + + def __init__(self, klass): + super().__init__(object_hook=self.object_hook) + self._registry = {} + self._child_parent_map = {} + self._klass = klass + + def decode(self, s, _w=json.decoder.WHITESPACE.match): + decoded = super().decode(s) + # Re-link parents & children + for child_uid, parent_uid in self._child_parent_map.items(): + child = self._registry[child_uid] + child.set_parent(self._registry.get(parent_uid, None)) + + return decoded + + def object_hook(self, json_o: dict): + """Object Hook in json.load will iterate upwards from the deepest + nested JSON object (dictionary), calling this hook on each, then passing + the result up to the next level object. + Thus we can re-assemble the entire Project hierarchy given that all classes + can be created via their __init__ methods + (i.e. must accept passing child objects through a parameter) + + The _type attribute is expected (and injected during serialization), for any + custom objects which should be processed by the project_hook + + The type of the current project class (or sub-class) is injected into + the class map which allows for this object hook to be utilized by any + inheritor without modification. + + """ + if '_type' not in json_o: + return json_o + _type = json_o.pop('_type') + + if 'parent' in json_o: + parent = json_o.pop('parent') # type: OID + else: + parent = None + + params = {key.lstrip('_'): value for key, value in json_o.items()} + if _type == OID.__name__: + return OID(**params) + elif _type == datetime.datetime.__name__: + return datetime.datetime.fromtimestamp(*params.values()) + elif _type == datetime.date.__name__: + return datetime.date.fromordinal(*params.values()) + elif _type == Path.__name__: + return Path(*params.values()) + else: + # Handle project entity types + klass = {self._klass.__name__: self._klass, **project_entities}.get(_type, None) + if klass is None: + raise AttributeError("Unhandled class %s in JSON data. Class is not defined" + " in entity map." % _type) + instance = klass(**params) + if parent is not None: + self._child_parent_map[instance.uid] = parent + self._registry[instance.uid] = instance + return instance + + class GravityProject: def __init__(self, name: str, path: Union[Path, str], description: Optional[str] = None, - create_date: Optional[datetime.datetime] = None, modify_date: Optional[datetime.datetime] = None, + create_date: Optional[datetime.datetime] = None, + modify_date: Optional[datetime.datetime] = None, uid: Optional[str] = None, **kwargs): self._uid = uid or OID(self, tag=name) self._uid.set_pointer(self) self._name = name self._path = path - self._projectfile = 'dgp.json' + self._projectfile = PROJECT_FILE_NAME self._description = description self._create_date = create_date or datetime.datetime.utcnow() self._modify_date = modify_date or self._create_date @@ -162,47 +261,9 @@ def _modify(self): self._modify_date = datetime.datetime.utcnow() # Serialization/De-Serialization methods - @classmethod - def object_hook(cls, json_o: Dict): - """Object Hook in json.load will iterate upwards from the deepest - nested JSON object (dictionary), calling this hook on each, then passing - the result up to the next level object. - Thus we can re-assemble the entire - Project hierarchy given that all classes can be created via their __init__ - methods (i.e. must accept passing child objects through a parameter) - - The _type attribute is expected (and injected during serialization), for any - custom objects which should be processed by the project_hook - - The type of the current project class (or sub-class) is injected into - the class map which allows for this object hook to be utilized by any - inheritor without modification. - """ - if '_type' not in json_o: - return json_o - - _type = json_o.pop('_type') - params = {key.lstrip('_'): value for key, value in json_o.items()} - if _type == cls.__name__: - return cls(**params) - elif _type == OID.__name__: - return OID(**params) - elif _type == datetime.datetime.__name__: - return datetime.datetime.fromtimestamp(*params.values()) - elif _type == datetime.date.__name__: - return datetime.date.fromordinal(*params.values()) - elif _type == Path.__name__: - return Path(*params.values()) - else: - klass = project_entities.get(_type, None) - if klass is None: - raise AttributeError("Unhandled class %s in JSON data. Class is not defined" - " in class map." % _type) - return klass(**params) - @classmethod def from_json(cls, json_str: str) -> 'GravityProject': - return json.loads(json_str, object_hook=cls.object_hook) + return json.loads(json_str, cls=ProjectDecoder, klass=cls) def to_json(self, to_file=False, indent=None) -> Union[str, bool]: # TODO: Dump file to a temp file, then if successful overwrite the original @@ -234,6 +295,7 @@ def add_child(self, child): self._modify() else: super().add_child(child) + child.set_parent(self) def get_child(self, child_id: OID) -> Union[Flight, Gravimeter]: try: diff --git a/tests/test_datastore.py b/tests/test_datastore.py index 06d18f6..04fabf8 100644 --- a/tests/test_datastore.py +++ b/tests/test_datastore.py @@ -2,25 +2,29 @@ import tempfile import uuid +from datetime import datetime from pathlib import Path import pytest from pandas import DataFrame -# from .context import dgp -import dgp.lib.datastore as ds +from core.models.flight import Flight +from .context import dgp +from dgp.core.models.data import DataFile +from dgp.core.oid import OID +from dgp.core.controllers.hdf5_controller import HDFController, HDF5_NAME class TestDataManager: @pytest.fixture(scope='session') - def temp_dir(self): + def temp_dir(self) -> Path: return Path(tempfile.gettempdir()).joinpath(str(uuid.uuid4())) @pytest.fixture(scope='session') - def store(self, temp_dir) -> ds._DataStore: - ds.init(temp_dir) - return ds.get_datastore() + def store(self, temp_dir: Path) -> HDFController: + hdf = HDFController(temp_dir, mkdir=True) + return hdf @pytest.fixture def test_df(self): @@ -29,39 +33,33 @@ def test_df(self): return DataFrame.from_dict(data) def test_datastore_init(self, store, temp_dir): - store = ds.get_datastore() - assert isinstance(store, ds._DataStore) + assert isinstance(store, HDFController) assert store.dir == temp_dir - assert store._path == temp_dir.joinpath(ds.HDF5_NAME) + assert store.hdf5path == temp_dir.joinpath(HDF5_NAME) def test_datastore_save(self, store, test_df): - assert store.initialized - - fltid = uuid.uuid4() - - res = store.save_data(test_df, fltid, 'gravity') - loaded = store.load_data(fltid, 'gravity', res) + flt = Flight('Test-Flight') + file = DataFile('gravity', datetime.now(), Path('./test.dat'), parent=flt) + assert store.save_data(test_df, file) + loaded = store.load_data(file) assert test_df.equals(loaded) - def test_ds_metadata(self, store: ds._DataStore, test_df): - fltid = uuid.uuid4() - grpid = 'gravity' - uid = uuid.uuid4() - - node_path = store._get_path(fltid, grpid, uid) - store.save_data(test_df, fltid, grpid, uid) + def test_ds_metadata(self, store: HDFController, test_df): + flt = Flight('TestMetadataFlight') + file = DataFile('gravity', datetime.now(), source_path=Path('./test.dat'), parent=flt) + store.save_data(test_df, file) attr_key = 'test_attr' attr_value = {'a': 'complex', 'v': 'value'} # Assert True result first - assert store._set_node_attr(node_path, attr_key, attr_value) + assert store._set_node_attr(file.hdfpath, attr_key, attr_value) # Validate value was stored, and can be retrieved - result = store._get_node_attr(node_path, attr_key) + result = store._get_node_attr(file.hdfpath, attr_key) assert attr_value == result # Test retrieval of keys for a specified node - assert attr_key in store.get_node_attrs(node_path) + assert attr_key in store.get_node_attrs(file.hdfpath) with pytest.raises(KeyError): store._set_node_attr('/invalid/node/path', attr_key, attr_value) diff --git a/tests/test_project_controllers.py b/tests/test_project_controllers.py index 7a9f85d..c711d41 100644 --- a/tests/test_project_controllers.py +++ b/tests/test_project_controllers.py @@ -1,4 +1,5 @@ # -*- coding: utf-8 -*- +import random from datetime import datetime from pathlib import Path @@ -17,6 +18,20 @@ def flight_ctrl(): pass +@pytest.fixture() +def make_line(): + seq = 0 + + def _factory(): + nonlocal seq + seq += 1 + return FlightLine(datetime.now().timestamp(), + datetime.now().timestamp() + round(random.random() * 1000), + seq) + + return _factory + + def test_flightline_controller(): pass @@ -24,7 +39,7 @@ def test_flightline_controller(): def test_datafile_controller(): flight = Flight('test_flightline_controller') fl_controller = FlightController(flight) - datafile = DataFile('test_flightline', 'gravity', datetime(2018, 6, 15), + datafile = DataFile('gravity', datetime(2018, 6, 15), source_path=Path('c:\\data\\gravity.dat')) fl_controller.add_child(datafile) @@ -33,24 +48,23 @@ def test_datafile_controller(): assert isinstance(fl_controller._data_files.child(0), DataFileController) - def test_gravimeter_controller(): pass -def test_flight_controller(): +def test_flight_controller(make_line): flight = Flight('Test-Flt-1') fc = FlightController(flight) assert flight.uid == fc.uid assert flight.name == fc.data(Qt.DisplayRole) - line1 = FlightLine(0, 125, 1) - line2 = FlightLine(126, 200, 2) - line3 = FlightLine(201, 356, 3) + line1 = make_line() + line2 = make_line() + line3 = make_line() - data1 = DataFile(flight.uid.base_uuid, 'gravity', datetime(2018, 5, 15)) - data2 = DataFile(flight.uid.base_uuid, 'gravity', datetime(2018, 5, 25)) + data1 = DataFile('gravity', datetime(2018, 5, 15), Path('./data1.dat')) + data2 = DataFile('gravity', datetime(2018, 5, 25), Path('./data2.dat')) assert fc.add_child(line1) assert fc.add_child(line2) diff --git a/tests/test_project_models.py b/tests/test_project_models.py index 361a1e1..163a3ae 100644 --- a/tests/test_project_models.py +++ b/tests/test_project_models.py @@ -6,6 +6,7 @@ """ import json import time +import random from datetime import datetime from typing import Tuple from uuid import uuid4 @@ -13,6 +14,8 @@ from pprint import pprint import pytest + +from dgp.core.models.data import DataFile from dgp.core.models import project, flight from dgp.core.models.meter import Gravimeter @@ -29,10 +32,12 @@ def _factory() -> Tuple[str, flight.Flight]: def make_line(): seq = 0 - def _factory(start, stop): + def _factory(): nonlocal seq seq += 1 - return flight.FlightLine(start, stop, seq) + return flight.FlightLine(datetime.now().timestamp(), + datetime.now().timestamp() + round(random.random() * 1000), + seq) return _factory @@ -48,8 +53,8 @@ def test_flight_actions(make_flight, make_line): assert not f1.uid == f2.uid - line1 = make_line(0, 10) # type: flight.FlightLine - line2 = make_line(11, 21) # type: flight.FlightLine + line1 = make_line() # type: flight.FlightLine + line2 = make_line() # type: flight.FlightLine assert not line1.sequence == line2.sequence @@ -77,12 +82,7 @@ def test_flight_actions(make_flight, make_line): assert '' % (f1_name, f1.uid) == repr(f1) -def test_project_actions(): - # TODO: test add/get/remove child - pass - - -def test_project_attr(make_flight): +def test_project_attr(): prj_path = Path('./project-1') prj = project.AirborneProject(name="Project-1", path=prj_path, description="Test Project 1") @@ -100,10 +100,6 @@ def test_project_attr(make_flight): assert 2345 == prj['_my_private_val'] assert 2345 == prj.get_attr('_my_private_val') - f1_name, flt1 = make_flight() - prj.add_child(flt1) - # TODO: What am I testing here? - def test_project_get_child(make_flight): prj = project.AirborneProject(name="Project-2", path=Path('.')) @@ -145,8 +141,8 @@ def test_project_serialize(make_flight, make_line): prj = project.AirborneProject(name="Project-3", path=prj_path, description="Test Project Serialization") f1_name, f1 = make_flight() # type: flight.Flight - line1 = make_line(0, 10) # type: # flight.FlightLine - data1 = flight.DataFile(f1.uid, 'gravity', datetime.today()) + line1 = make_line() # type: # flight.FlightLine + data1 = flight.DataFile('gravity', datetime.today(), Path('./fake_file.dat')) f1.add_child(line1) f1.add_child(data1) prj.add_child(f1) @@ -157,7 +153,16 @@ def test_project_serialize(make_flight, make_line): encoded = prj.to_json(indent=4) decoded_dict = json.loads(encoded) - # TODO: Test that all params are there + # pprint(decoded_dict) + + assert 'Project-3' == decoded_dict['name'] + assert {'_type': 'Path', 'path': 'prj-1'} == decoded_dict['path'] + assert 'start_tie_value' in decoded_dict['attributes'] + assert 1234.90 == decoded_dict['attributes']['start_tie_value'] + assert 'end_tie_value' in decoded_dict['attributes'] + assert 987.123 == decoded_dict['attributes']['end_tie_value'] + for flight_dict in decoded_dict['flights']: + assert '_type' in flight_dict and flight_dict['_type'] == 'Flight' def test_project_deserialize(make_flight, make_line): @@ -177,10 +182,12 @@ def test_project_deserialize(make_flight, make_line): f1_name, f1 = make_flight() # type: flight.Flight f2_name, f2 = make_flight() - line1 = make_line(0, 10) # type: flight.FlightLine - line2 = make_line(11, 20) + line1 = make_line() # type: flight.FlightLine + line2 = make_line() + data1 = DataFile('gravity', datetime.today(), Path('./data1.dat')) f1.add_child(line1) f1.add_child(line2) + f1.add_child(data1) prj.add_child(f1) prj.add_child(f2) @@ -189,7 +196,7 @@ def test_project_deserialize(make_flight, make_line): prj.add_child(mtr) serialized = prj.to_json(indent=4) - time.sleep(0.25) # Fuzz for modification date + time.sleep(0.20) # Fuzz for modification date prj_deserialized = project.AirborneProject.from_json(serialized) re_serialized = prj_deserialized.to_json(indent=4) assert serialized == re_serialized @@ -215,3 +222,32 @@ def test_project_deserialize(make_flight, make_line): assert line1.uid in [line.uid for line in f1_reconstructed.flight_lines] assert line2.uid in [line.uid for line in f1_reconstructed.flight_lines] + +def test_parent_child_serialization(): + """Test that an object _parent reference is correctly serialized and deserialized + i.e. when a child say FlightLine or DataFile is added to a flight, it should + have a reference to its parent Flight. + When de-serializing, check to see that this reference has been correctly assembled + """ + prj = project.AirborneProject(name="Parent-Child-Test", path=Path('.')) + flt = flight.Flight('Flight-1') + data1 = DataFile('gravity', datetime.now(), Path('./data1.dat')) + + flt.add_child(data1) + assert flt == data1._parent + + prj.add_child(flt) + assert flt in prj.flights + + encoded = prj.to_json(indent=2) + # pprint(encoded) + + decoded = project.AirborneProject.from_json(encoded) + + assert 1 == len(decoded.flights) + flt_ = decoded.flights[0] + assert 1 == len(flt_.data_files) + data_ = flt_.data_files[0] + assert flt_ == data_._parent + + From 1efdaea9bcc0dab1b659762ab615d5e491e60d53 Mon Sep 17 00:00:00 2001 From: Zachery Brady Date: Mon, 2 Jul 2018 18:15:06 -0600 Subject: [PATCH 123/236] Add dialog tests, updates to dialogs. Added tests for CreateProjectDialog, AddFlightDialog, AddGravimeterDialog (incomplete). Removed old unittest module based tests. --- dgp/gui/dialog/add_flight_dialog.py | 53 +++---- dgp/gui/dialog/add_gravimeter_dialog.py | 58 ++++++-- dgp/gui/dialog/create_project_dialog.py | 7 +- dgp/gui/dialog/data_import_dialog.py | 5 +- dgp/gui/ui/add_flight_dialog.ui | 6 +- dgp/gui/ui/add_meter_dialog.ui | 86 +++++++---- dgp/gui/ui/create_project_dialog.ui | 12 +- dgp/gui/ui/data_import_dialog.ui | 14 +- tests/test_datastore.py | 4 +- tests/test_dialogs.py | 184 +++++++++++++----------- 10 files changed, 262 insertions(+), 167 deletions(-) diff --git a/dgp/gui/dialog/add_flight_dialog.py b/dgp/gui/dialog/add_flight_dialog.py index 53b36ec..1171df2 100644 --- a/dgp/gui/dialog/add_flight_dialog.py +++ b/dgp/gui/dialog/add_flight_dialog.py @@ -1,5 +1,5 @@ # -*- coding: utf-8 -*- -from datetime import datetime +import datetime from typing import Optional from PyQt5.QtCore import Qt, QDate @@ -17,18 +17,21 @@ def __init__(self, project: IAirborneController, flight: IFlightController = Non super().__init__(parent) self.setupUi(self) self._project = project - self._fctrl = flight + self._flight = flight self.cb_gravimeters.setModel(project.meter_model) - self.qde_flight_date.setDate(datetime.today()) - self.qsb_sequence.setValue(project.flight_model.rowCount()) - self.qpb_add_sensor.clicked.connect(self._project.add_gravimeter) + if self._flight is not None: + self._set_flight(self._flight) + else: + self.qde_flight_date.setDate(datetime.date.today()) + self.qsb_sequence.setValue(project.flight_model.rowCount()) + def accept(self): name = self.qle_flight_name.text() qdate: QDate = self.qde_flight_date.date() - date = datetime(qdate.year(), qdate.month(), qdate.day()) + date = datetime.date(qdate.year(), qdate.month(), qdate.day()) notes = self.qte_notes.toPlainText() sequence = self.qsb_sequence.value() duration = self.qsb_duration.value() @@ -38,15 +41,16 @@ def accept(self): # TODO: Add meter association to flight # how to make a reference that can be retrieved after loading from JSON? - if self._fctrl is not None: + if self._flight is not None: # Existing flight - update - self._fctrl.set_attr('name', name) - self._fctrl.set_attr('date', date) - self._fctrl.set_attr('notes', notes) - self._fctrl.set_attr('sequence', sequence) - self._fctrl.set_attr('duration', duration) - self._fctrl.add_child(meter) + self._flight.set_attr('name', name) + self._flight.set_attr('date', date) + self._flight.set_attr('notes', notes) + self._flight.set_attr('sequence', sequence) + self._flight.set_attr('duration', duration) + self._flight.add_child(meter) else: + # Create new flight and add it to project flt = Flight(self.qle_flight_name.text(), date=date, notes=self.qte_notes.toPlainText(), sequence=sequence, duration=duration) @@ -54,16 +58,17 @@ def accept(self): super().accept() - @classmethod - def from_existing(cls, flight: IFlightController, project: IAirborneController, - parent: Optional[QWidget] = None): - dialog = cls(project, flight, parent=parent) - dialog.setWindowTitle("Properties: " + flight.name) - dialog.qle_flight_name.setText(flight.name) - dialog.qte_notes.setText(flight.notes) - dialog.qsb_duration.setValue(flight.duration) - dialog.qsb_sequence.setValue(flight.sequence) + def _set_flight(self, flight: IFlightController): + self.setWindowTitle("Properties: " + flight.name) + self.qle_flight_name.setText(flight.name) + self.qte_notes.setText(flight.notes) + self.qsb_duration.setValue(flight.duration) + self.qsb_sequence.setValue(flight.sequence) if flight.date is not None: - dialog.qde_flight_date.setDate(flight.date) + self.qde_flight_date.setDate(flight.date) - return dialog + @classmethod + def from_existing(cls, flight: IFlightController, + project: IAirborneController, + parent: Optional[QWidget] = None): + return cls(project, flight, parent=parent) diff --git a/dgp/gui/dialog/add_gravimeter_dialog.py b/dgp/gui/dialog/add_gravimeter_dialog.py index d0fbd91..b9a8653 100644 --- a/dgp/gui/dialog/add_gravimeter_dialog.py +++ b/dgp/gui/dialog/add_gravimeter_dialog.py @@ -1,10 +1,11 @@ # -*- coding: utf-8 -*- import os +from pathlib import Path from pprint import pprint from typing import Optional from PyQt5.QtCore import Qt -from PyQt5.QtGui import QIntValidator, QIcon +from PyQt5.QtGui import QIntValidator, QIcon, QStandardItemModel, QStandardItem from PyQt5.QtWidgets import QDialog, QWidget, QFileDialog, QListWidgetItem from dgp.core.controllers.controller_interfaces import IAirborneController @@ -30,9 +31,37 @@ def __init__(self, project: IAirborneController, parent: Optional[QWidget] = Non self.qlw_metertype.setCurrentRow(0) self.qtb_browse_config.clicked.connect(self._browse_config) + self.qle_config_path.textChanged.connect(self._path_changed) self.qle_serial.textChanged.connect(lambda text: self._serial_changed(text)) self.qle_serial.setValidator(QIntValidator(1, 1000)) - # self.qle_config_path.textChanged.connect(lambda text: self._text_changed(text)) + + self._config_model = QStandardItemModel() + self._config_model.itemChanged.connect(self._config_data_changed) + + self.qtv_config_view.setModel(self._config_model) + + @property + def path(self): + if not len(self.qle_config_path.text()): + return None + _path = Path(self.qle_config_path.text()) + if not _path.exists(): + return None + return _path + + def accept(self): + if self.qle_config_path.text(): + meter = Gravimeter.from_ini(Path(self.qle_config_path.text()), name=self.qle_name.text()) + pprint(meter.config) + else: + meter = Gravimeter(self.qle_name.text()) + self._project.add_child(meter) + + super().accept() + + def _path_changed(self, text: str): + if self.path is not None: + self._preview_config() def get_sensor_type(self) -> str: item = self.qlw_metertype.currentItem() @@ -46,18 +75,23 @@ def _browse_config(self): if path: self.qle_config_path.setText(path) + def _config_data_changed(self, item: QStandardItem): + # TODO: Implement this if desire to enable editing of config from the preview table + index = self._config_model.index(item.row(), item.column()) + sibling = self._config_model.index(item.row(), 0 if item.column() else 1) + + def _preview_config(self): + if self.path is None: + return + config = Gravimeter.read_config(self.path) + + self._config_model.clear() + self._config_model.setHorizontalHeaderLabels(["Config Key", "Value"]) + for key, value in config.items(): + self._config_model.appendRow([QStandardItem(key), QStandardItem(str(value))]) + def _type_changed(self, row: int): self._serial_changed(self.qle_serial.text()) def _serial_changed(self, text: str): self.qle_name.setText("%s-%s" % (self.get_sensor_type(), text)) - - def accept(self): - if self.qle_config_path.text(): - meter = Gravimeter.from_ini(self.qle_config_path.text()) - pprint(meter.config) - else: - meter = Gravimeter(self.qle_name.text()) - self._project.add_child(meter) - - super().accept() diff --git a/dgp/gui/dialog/create_project_dialog.py b/dgp/gui/dialog/create_project_dialog.py index 5f2768a..7552e48 100644 --- a/dgp/gui/dialog/create_project_dialog.py +++ b/dgp/gui/dialog/create_project_dialog.py @@ -33,6 +33,10 @@ def __init__(self): self.prj_type_list) dgs_marine.setData(Qt.UserRole, ProjectTypes.MARINE) + def show_message(self, message, **kwargs): + """Shim to replace BaseDialog method""" + print(message) + def accept(self): """ Called upon 'Create' button push, do some basic validation of fields @@ -67,11 +71,12 @@ def accept(self): cdata = self.prj_type_list.currentItem().data(Qt.UserRole) if cdata == ProjectTypes.AIRBORNE: name = str(self.prj_name.text()).rstrip() + name = "".join([word.capitalize() for word in name.split(' ')]) path = Path(self.prj_dir.text()).joinpath(name) if not path.exists(): path.mkdir(parents=True) - self._project = AirborneProject(name=name, path=path, description="Not implemented yet in Create Dialog") + self._project = AirborneProject(name=name, path=path, description=self.qpte_notes.toPlainText()) else: self.show_message("Invalid Project Type (Not yet implemented)", log=logging.WARNING, color='red') diff --git a/dgp/gui/dialog/data_import_dialog.py b/dgp/gui/dialog/data_import_dialog.py index 4a6b4e6..b93466b 100644 --- a/dgp/gui/dialog/data_import_dialog.py +++ b/dgp/gui/dialog/data_import_dialog.py @@ -107,7 +107,7 @@ def set_initial_flight(self, flight: IFlightController): def _load_file(self): # TODO: How to deal with type specific fields - file = DataFile(self.flight.uid.base_uuid, self.datatype.value.lower(), date=self.date, + file = DataFile(self.datatype.value.lower(), date=self.date, source_path=self.file_path, name=self.qle_rename.text()) param_map = self._params_map[self.datatype] # Evaluate and build params dict @@ -217,9 +217,6 @@ def _filepath_changed(self, text: str): self.qle_linecount.setText(str(line_count)) self.qle_colcount.setText(str(col_count)) - - - @pyqtSlot(int, name='_gravimeter_changed') def _gravimeter_changed(self, index: int): meter_ctrl = self.project.meter_model.item(index) diff --git a/dgp/gui/ui/add_flight_dialog.ui b/dgp/gui/ui/add_flight_dialog.ui index d7752f6..627dd6f 100644 --- a/dgp/gui/ui/add_flight_dialog.ui +++ b/dgp/gui/ui/add_flight_dialog.ui @@ -163,7 +163,7 @@ - + QDialogButtonBox::Cancel|QDialogButtonBox::Ok @@ -176,7 +176,7 @@ - buttons_dialog + qdbb_dialog_btns rejected() NewFlight reject() @@ -192,7 +192,7 @@ - buttons_dialog + qdbb_dialog_btns accepted() NewFlight accept() diff --git a/dgp/gui/ui/add_meter_dialog.ui b/dgp/gui/ui/add_meter_dialog.ui index 561e2e6..703d2ec 100644 --- a/dgp/gui/ui/add_meter_dialog.ui +++ b/dgp/gui/ui/add_meter_dialog.ui @@ -21,12 +21,12 @@ 0 - 9 + 0 - + 0 0 @@ -37,7 +37,10 @@ - + + + 9 + @@ -71,6 +74,16 @@ + + + Tag/Description + + + + + + + Configuration (ini) @@ -80,7 +93,7 @@ - + @@ -94,6 +107,9 @@ + + Browse for a meter configuration file + Browse... @@ -101,40 +117,58 @@ - - + + + + Copy the original configuration into the project directory + - Notes + Copy configuration to project folder - - + + + + Configuration + + + + + - + 0 0 + + + 0 + 50 + + + + QAbstractItemView::NoEditTriggers + + + false + + + true + + + true + + + false + - - - Qt::Vertical - - - - 20 - 40 - - - - - - + Qt::Horizontal @@ -154,7 +188,9 @@ - + + + dialog_btns diff --git a/dgp/gui/ui/create_project_dialog.ui b/dgp/gui/ui/create_project_dialog.ui index 2ff35c6..5040b6f 100644 --- a/dgp/gui/ui/create_project_dialog.ui +++ b/dgp/gui/ui/create_project_dialog.ui @@ -253,7 +253,17 @@ + + + + Project Notes + + + + + + @@ -269,7 +279,7 @@ - + diff --git a/dgp/gui/ui/data_import_dialog.ui b/dgp/gui/ui/data_import_dialog.ui index 891c856..0a627ad 100644 --- a/dgp/gui/ui/data_import_dialog.ui +++ b/dgp/gui/ui/data_import_dialog.ui @@ -158,25 +158,15 @@ - + - - - - Copy the raw source data file into the project directory when imported + Copy source file to project directory Copy to Project Dir - - - - Copy source file to project directory - - - diff --git a/tests/test_datastore.py b/tests/test_datastore.py index 04fabf8..8e2e4e9 100644 --- a/tests/test_datastore.py +++ b/tests/test_datastore.py @@ -8,11 +8,11 @@ import pytest from pandas import DataFrame -from core.models.flight import Flight -from .context import dgp +from dgp.core.models.flight import Flight from dgp.core.models.data import DataFile from dgp.core.oid import OID from dgp.core.controllers.hdf5_controller import HDFController, HDF5_NAME +# from .context import dgp class TestDataManager: diff --git a/tests/test_dialogs.py b/tests/test_dialogs.py index 4b72dca..4b3b7af 100644 --- a/tests/test_dialogs.py +++ b/tests/test_dialogs.py @@ -1,90 +1,108 @@ # coding: utf-8 +from datetime import datetime, date +from pathlib import Path -import pathlib -import tempfile -import unittest +import pytest + +from .context import APP from PyQt5.QtCore import Qt from PyQt5.QtTest import QTest -import PyQt5.QtWidgets as QtWidgets import PyQt5.QtTest as QtTest +from PyQt5.QtWidgets import QDialogButtonBox + +from dgp.core.models.flight import Flight +from dgp.core.controllers.project_controllers import AirborneProjectController +from dgp.gui.dialog.add_gravimeter_dialog import AddGravimeterDialog +from dgp.gui.dialog.add_flight_dialog import AddFlightDialog +from dgp.core.models.project import AirborneProject +from dgp.gui.dialog.create_project_dialog import CreateProjectDialog + + +@pytest.fixture +def airborne_prj(tmpdir): + project = AirborneProject(name="AirborneProject", path=Path(tmpdir)) + prj_ctrl = AirborneProjectController(project) + return project, prj_ctrl + + +class TestDialogs: + def test_create_project_dialog(self, tmpdir): + dlg = CreateProjectDialog() + _name = "Test Project" + _notes = "Notes on the Test Project" + _path = Path(tmpdir) + + QTest.keyClicks(dlg.prj_name, _name) + assert _name == dlg.prj_name.text() + + assert str(Path().home().joinpath('Desktop')) == dlg.prj_dir.text() + + dlg.prj_dir.setText('') + QTest.keyClicks(dlg.prj_dir, str(_path)) + assert str(_path) == dlg.prj_dir.text() + + QTest.keyClicks(dlg.qpte_notes, _notes) + assert _notes == dlg.qpte_notes.toPlainText() + + QTest.mouseClick(dlg.btn_create, Qt.LeftButton) + + assert isinstance(dlg.project, AirborneProject) + assert _path.joinpath("TestProject") == dlg.project.path + assert dlg.project.name == "".join(_name.split(' ')) + assert dlg.project.description == _notes + + def test_add_flight_dialog(self, airborne_prj): + project, project_ctrl = airborne_prj + dlg = AddFlightDialog(project_ctrl) + spy = QtTest.QSignalSpy(dlg.accepted) + assert spy.isValid() + assert 0 == len(spy) + + _name = "Flight-1" + _notes = "Notes for Flight-1" + + assert datetime.today() == dlg.qde_flight_date.date() + QTest.keyClicks(dlg.qle_flight_name, _name) + QTest.keyClicks(dlg.qte_notes, _notes) + + assert _name == dlg.qle_flight_name.text() + assert _notes == dlg.qte_notes.toPlainText() + + QTest.mouseClick(dlg.qdbb_dialog_btns.button(QDialogButtonBox.Ok), Qt.LeftButton) + # dlg.accept() + + assert 1 == len(spy) + assert 1 == len(project.flights) + assert isinstance(project.flights[0], Flight) + assert _name == project.flights[0].name + assert _notes == project.flights[0].notes + assert date.today() == project.flights[0].date + + def test_edit_flight_dialog(self, airborne_prj): + """Test Flight Dialog to edit an existing flight""" + project, project_ctrl = airborne_prj # type: AirborneProject, AirborneProjectController + + _name = "Flt-1" + _date = datetime(2018, 5, 15) + _notes = "Notes on flight 1" + flt = Flight(_name, date=_date, notes=_notes, sequence=0, duration=6) + + flt_ctrl = project_ctrl.add_child(flt) + + dlg = AddFlightDialog.from_existing(flt_ctrl, project_ctrl) + + assert _name == dlg.qle_flight_name.text() + assert _date == dlg.qde_flight_date.date() + assert _notes == dlg.qte_notes.toPlainText() + + # Test renaming flight through dialog + dlg.qle_flight_name.clear() + QTest.keyClicks(dlg.qle_flight_name, "Flt-2") + QTest.mouseClick(dlg.qdbb_dialog_btns.button(QDialogButtonBox.Ok), Qt.LeftButton) + assert "Flt-2" == flt.name + + def test_add_gravimeter_dialog(self, airborne_prj): + project, project_ctrl = airborne_prj + dlg = AddGravimeterDialog(project_ctrl) -import dgp.gui.dialogs as dlg -import core.types.enumerations as enums - - -class TestDialogs(unittest.TestCase): - def setUp(self): - with tempfile.TemporaryDirectory() as td: - self.m_prj = prj.AirborneProject(td, 'mock_project') - self.m_flight = prj.Flight(self.m_prj, 'mock_flight') - self.m_prj.add_flight(self.m_flight) - self.m_data = [['h1', 'h2', 'h3'], - ['r1h1', 'r1h2', 'r1h3']] - self.m_grav_path = pathlib.Path('tests/sample_gravity.csv') - self.m_gps_path = pathlib.Path('tests/sample_trajectory.txt') - - def test_properties_dialog(self): - t_dlg = dlg.PropertiesDialog(self.m_flight) - self.assertEqual(8, t_dlg.form.rowCount()) - spy = QtTest.QSignalSpy(t_dlg.accepted) - self.assertTrue(spy.isValid()) - QTest.mouseClick(t_dlg._btns.button(QtWidgets.QDialogButtonBox.Ok), - Qt.LeftButton) - self.assertEqual(1, len(spy)) - - # def test_advanced_import_dialog_gravity(self): - # t_dlg = dlg.AdvancedImportDialog(self.m_prj, self.m_flight, - # enums.DataTypes.GRAVITY) - # self.assertEqual(self.m_flight, t_dlg.flight) - # self.assertIsNone(t_dlg.path) - # - # t_dlg.cb_format.setCurrentIndex(0) - # editor = t_dlg.editor - # - # # Test format property setter, and reflection in editor format - # for fmt in enums.GravityTypes: - # self.assertNotEqual(-1, t_dlg.cb_format.findData(fmt)) - # t_dlg.format = fmt - # self.assertEqual(t_dlg.format, editor.format) - # - # t_dlg.path = self.m_grav_path - # self.assertEqual(self.m_grav_path, t_dlg.path) - # self.assertEqual(list(t_dlg.cb_format.currentData().value), - # editor.columns) - # - # # Set formatter back to type AT1A for param testing - # t_dlg.format = enums.GravityTypes.AT1A - # self.assertEqual(t_dlg.format, enums.GravityTypes.AT1A) - # - # # Test behavior of skiprow property - # # Should return None if unchecked, and 1 if checked - # self.assertIsNone(editor.skiprow) - # editor.skiprow = True - # self.assertEqual(1, editor.skiprow) - # - # # Test generation of params property on dialog accept() - # t_dlg.accept() - # result_params = dict(path=self.m_grav_path, - # columns=list(enums.GravityTypes.AT1A.value), - # skiprows=1, - # subtype=enums.GravityTypes.AT1A) - # self.assertEqual(result_params, t_dlg.params) - # self.assertEqual(self.m_flight, t_dlg.flight) - - # def test_advanced_import_dialog_trajectory(self): - # t_dlg = dlg.AdvancedImportDialog(self.m_prj, self.m_flight, - # enums.DataTypes.TRAJECTORY) - # - # # Test all GPSFields represented, and setting via format property - # for fmt in enums.GPSFields: - # self.assertNotEqual(-1, t_dlg.cb_format.findData(fmt)) - # t_dlg.format = fmt - # self.assertEqual(fmt, t_dlg.format) - # col_fmt = t_dlg.params['subtype'] - # self.assertEqual(fmt, col_fmt) - # t_dlg.format = enums.GPSFields.hms - # - # # Verify expected output, ordered correctly - # hms_expected = ['mdy', 'hms', 'lat', 'long', 'ell_ht'] - # self.assertEqual(hms_expected, t_dlg.params['columns']) From db34b2dcf639add261654689e508f2ee4775a38d Mon Sep 17 00:00:00 2001 From: Zachery Brady Date: Mon, 2 Jul 2018 18:15:41 -0600 Subject: [PATCH 124/236] Update CI script to run Coverage report Use pytest plugin pytest-cov to execute test suite with coverage Add Coverage Reporting. Fix build errors. Fixed error in test_project_models where relative path was compared to absolute path. --- .travis.yml | 6 +++++- dgp/core/controllers/datafile_controller.py | 2 +- dgp/core/models/flight.py | 2 +- tests/test_project_models.py | 2 +- 4 files changed, 8 insertions(+), 4 deletions(-) diff --git a/.travis.yml b/.travis.yml index 1266fe2..665a471 100644 --- a/.travis.yml +++ b/.travis.yml @@ -10,12 +10,16 @@ install: - pip install Cython==0.28.3 - pip install -r requirements.txt - pip install coverage + - pip install pytest-cov + - pip install coveralls before_script: - "export DISPLAY=:99.0" - "sh -e /etc/init.d/xvfb start" - sleep 3 - python utils/build_uic.py dgp/gui/ui script: - coverage run --source=dgp -m unittest discover + pytest --cov=dgp tests +after_success: + - coveralls notifications: slack: polargeophysicsgroup:FO0QAgTctTetembHbEJq8hxP diff --git a/dgp/core/controllers/datafile_controller.py b/dgp/core/controllers/datafile_controller.py index b37fe09..99ef525 100644 --- a/dgp/core/controllers/datafile_controller.py +++ b/dgp/core/controllers/datafile_controller.py @@ -16,7 +16,7 @@ class DataFileController(QStandardItem, AttributeProxy): def __init__(self, datafile: DataFile, controller: IFlightController): super().__init__() self._datafile = datafile - self._flight_ctrl: IFlightController = controller + self._flight_ctrl = controller # type: IFlightController self.log = logging.getLogger(__name__) self.setText(self._datafile.label) diff --git a/dgp/core/models/flight.py b/dgp/core/models/flight.py index 85020c1..113b6d0 100644 --- a/dgp/core/models/flight.py +++ b/dgp/core/models/flight.py @@ -82,7 +82,7 @@ def __init__(self, name: str, date: Optional[datetime] = None, notes: Optional[s self._flight_lines = kwargs.get('flight_lines', []) # type: List[FlightLine] self._data_files = kwargs.get('data_files', []) # type: List[DataFile] - self._meter: str = meter + self._meter = meter @property def name(self) -> str: diff --git a/tests/test_project_models.py b/tests/test_project_models.py index 163a3ae..05f9929 100644 --- a/tests/test_project_models.py +++ b/tests/test_project_models.py @@ -156,7 +156,7 @@ def test_project_serialize(make_flight, make_line): # pprint(decoded_dict) assert 'Project-3' == decoded_dict['name'] - assert {'_type': 'Path', 'path': 'prj-1'} == decoded_dict['path'] + assert {'_type': 'Path', 'path': str(Path('.').joinpath('prj-1').resolve())} == decoded_dict['path'] assert 'start_tie_value' in decoded_dict['attributes'] assert 1234.90 == decoded_dict['attributes']['start_tie_value'] assert 'end_tie_value' in decoded_dict['attributes'] From ecbfa17f5a802be6725f8155cd64bfac1cccba46 Mon Sep 17 00:00:00 2001 From: Zachery Brady Date: Tue, 3 Jul 2018 12:27:17 -0600 Subject: [PATCH 125/236] Add test coverage for Project Controllers/Flight Controller Add .coveragerc to exclude PyQt compiled resources, __repr__, and NotImplemented statements Split FileLoader out of project_controllers into its own module --- .coveragerc | 11 + dgp/core/controllers/controller_helpers.py | 4 +- dgp/core/controllers/controller_interfaces.py | 29 ++- dgp/core/controllers/flight_controller.py | 98 +++++---- dgp/core/controllers/gravimeter_controller.py | 44 ++-- dgp/core/controllers/project_controllers.py | 139 ++++-------- dgp/core/file_loader.py | 34 +++ dgp/core/models/flight.py | 2 +- dgp/core/models/project.py | 4 - dgp/gui/dialog/add_flight_dialog.py | 2 +- tests/test_dialogs.py | 4 +- tests/test_loader.py | 53 +++++ tests/test_project_controllers.py | 207 ++++++++++++++++-- tests/test_project_models.py | 2 +- 14 files changed, 430 insertions(+), 203 deletions(-) create mode 100644 .coveragerc create mode 100644 dgp/core/file_loader.py diff --git a/.coveragerc b/.coveragerc new file mode 100644 index 0000000..91b14fc --- /dev/null +++ b/.coveragerc @@ -0,0 +1,11 @@ +[run] +branch = True + +[report] +omit = + dgp/resources_rc.py + +exclude_lines = + pragma: no cover + def __repr__ + raise NotImplementedError diff --git a/dgp/core/controllers/controller_helpers.py b/dgp/core/controllers/controller_helpers.py index 20e62f6..f42580c 100644 --- a/dgp/core/controllers/controller_helpers.py +++ b/dgp/core/controllers/controller_helpers.py @@ -8,7 +8,7 @@ def confirm_action(title: str, message: str, - parent: Optional[Union[QWidget, QObject]]=None): + parent: Optional[Union[QWidget, QObject]]=None): # pragma: no cover dlg = QMessageBox(QMessageBox.Question, title, message, QMessageBox.Yes | QMessageBox.No, parent=parent) dlg.setDefaultButton(QMessageBox.No) @@ -16,7 +16,7 @@ def confirm_action(title: str, message: str, return dlg.result() == QMessageBox.Yes -def get_input(title: str, label: str, text: str, parent: QWidget=None): +def get_input(title: str, label: str, text: str, parent: QWidget=None): # pragma: no cover new_text, result = QInputDialog.getText(parent, title, label, text=text) if result: return new_text diff --git a/dgp/core/controllers/controller_interfaces.py b/dgp/core/controllers/controller_interfaces.py index f60d101..2b8d425 100644 --- a/dgp/core/controllers/controller_interfaces.py +++ b/dgp/core/controllers/controller_interfaces.py @@ -41,21 +41,6 @@ class IBaseController(QStandardItem, AttributeProxy): def uid(self) -> OID: raise NotImplementedError - def add_child(self, child): - raise NotImplementedError - - def remove_child(self, child, row: int, confirm: bool = True): - raise NotImplementedError - - def get_child(self, uid): - raise NotImplementedError - - def set_active_child(self, child, emit: bool = True): - raise NotImplementedError - - def get_active_child(self): - raise NotImplementedError - class IAirborneController(IBaseController): def add_flight(self): @@ -64,7 +49,7 @@ def add_flight(self): def add_gravimeter(self): raise NotImplementedError - def load_file(self, datatype: DataTypes, destination: Optional['IFlightController'] = None): + def load_file_dlg(self, datatype: DataTypes, destination: Optional['IFlightController'] = None): # pragma: no cover raise NotImplementedError @property @@ -83,11 +68,23 @@ def flight_model(self) -> QStandardItemModel: def meter_model(self) -> QStandardItemModel: raise NotImplementedError + def set_active_child(self, child, emit: bool = True): + raise NotImplementedError + + def get_active_child(self): + raise NotImplementedError + class IFlightController(IBaseController, IParent, IChild): def load_data(self, datafile) -> DataFrame: raise NotImplementedError + def set_active_child(self, child, emit: bool = True): + raise NotImplementedError + + def get_active_child(self): + raise NotImplementedError + class IMeterController(IBaseController, IChild): pass diff --git a/dgp/core/controllers/flight_controller.py b/dgp/core/controllers/flight_controller.py index dcfd6ac..652767a 100644 --- a/dgp/core/controllers/flight_controller.py +++ b/dgp/core/controllers/flight_controller.py @@ -1,4 +1,5 @@ # -*- coding: utf-8 -*- +import itertools import logging from typing import Optional, Union, Any, Generator @@ -10,9 +11,10 @@ from dgp.core.controllers.controller_interfaces import IAirborneController, IFlightController from dgp.core.controllers.datafile_controller import DataFileController from dgp.core.controllers.flightline_controller import FlightLineController -from dgp.core.models.meter import Gravimeter -from dgp.core.models.flight import Flight, FlightLine +from dgp.core.controllers.gravimeter_controller import GravimeterController from dgp.core.models.data import DataFile +from dgp.core.models.flight import Flight, FlightLine +from dgp.core.models.meter import Gravimeter from dgp.core.types.enumerations import DataTypes from dgp.gui.dialog.add_flight_dialog import AddFlightDialog from . import controller_helpers as helpers @@ -22,6 +24,11 @@ FOLDER_ICON = ":/icons/folder_open.png" +class LoadError(Exception): + pass + + + class FlightController(IFlightController): """ FlightController is a wrapper around :obj:`Flight` objects, and provides @@ -61,6 +68,13 @@ def __init__(self, flight: Flight, parent: IAirborneController = None): self.appendRow(self._data_files) self.appendRow(self._sensors) + self._control_map = {FlightLine: FlightLineController, + DataFile: DataFileController, + Gravimeter: GravimeterController} + self._child_map = {FlightLine: self._flight_lines, + DataFile: self._data_files, + Gravimeter: self._sensors} + self._data_model = QStandardItemModel() for line in self._flight.flight_lines: @@ -80,12 +94,12 @@ def __init__(self, flight: Flight, parent: IAirborneController = None): self.set_active_child(file_ctrl) # TODO: Consider adding MenuPrototype class which could provide the means to build QMenu - self._bindings = [ + self._bindings = [ # pragma: no cover ('addAction', ('Set Active', lambda: self.get_parent().set_active_child(self))), ('addAction', ('Import Gravity', - lambda: self.get_parent().load_file(DataTypes.GRAVITY, self))), + lambda: self.get_parent().load_file_dlg(DataTypes.GRAVITY, self))), ('addAction', ('Import Trajectory', - lambda: self.get_parent().load_file(DataTypes.TRAJECTORY, self))), + lambda: self.get_parent().load_file_dlg(DataTypes.TRAJECTORY, self))), ('addSeparator', ()), ('addAction', ('Delete <%s>' % self._flight.name, lambda: self.get_parent().remove_child(self._flight, self.row(), True))), @@ -106,10 +120,11 @@ def proxied(self) -> object: @property def data_model(self) -> QStandardItemModel: + """Return the data model representing each active Data channel in the flight""" return self._data_model @property - def menu_bindings(self): + def menu_bindings(self): # pragma: no cover """ Returns ------- @@ -121,14 +136,14 @@ def menu_bindings(self): @property def gravity(self): - if not self._active_gravity: + if not self._active_gravity: # pragma: no cover self.log.warning("No gravity file is set to active state.") return None return self._active_gravity.get_data() @property def trajectory(self): - if self._active_trajectory is None: + if self._active_trajectory is None: # pragma: no cover self.log.warning("No trajectory file is set to active state.") return None return self._active_trajectory.get_data() @@ -161,27 +176,29 @@ def clone(self): def is_active(self): return self.get_parent().get_active_child() == self + # TODO: This is not fully implemented def set_active_child(self, child: DataFileController, emit: bool = True): if not isinstance(child, DataFileController): - self.log.warning("Invalid child attempted to activate: %s", str(type(child))) + raise TypeError("Child {0!r} cannot be set to active (invalid type)".format(child)) + try: + df = self.load_data(child) + except LoadError: + self.log.exception("Error loading DataFile") return for i in range(self._data_files.rowCount()): - ci: DataFileController = self._data_files.child(i, 0) + ci = self._data_files.child(i, 0) # type: DataFileController if ci.data_group == child.data_group: ci.set_inactive() + self.data_model.clear() if child.data_group == 'gravity': - df = self.load_data(child) - if df is None: - return self._active_gravity = child child.set_active() # Experimental work on channel model # TODO: Need a way to clear ONLY the appropriate channels from the model, not all # e.g. don't clear trajectory channels when gravity file is changed - self.data_model.clear() for col in df: channel = QStandardItem(col) @@ -189,14 +206,16 @@ def set_active_child(self, child: DataFileController, emit: bool = True): channel.setCheckable(True) self._data_model.appendRow([channel, QStandardItem("Plot1"), QStandardItem("Plot2")]) - if child.data_group == 'trajectory': + # TODO: Implement and add test coverage + elif child.data_group == 'trajectory': # pragma: no cover self._active_trajectory = child child.set_active() + # TODO: Implement and add test coverage def get_active_child(self): pass - def add_child(self, child: Union[FlightLine, DataFile]) -> bool: + def add_child(self, child: Union[FlightLine, DataFile]) -> Union[FlightLineController, DataFileController, None]: """ Add a child to the underlying Flight, and to the model representation for the appropriate child type. @@ -212,19 +231,14 @@ def add_child(self, child: Union[FlightLine, DataFile]) -> bool: False on fail (e.g. child is not instance of FlightLine or DataFile """ + child_key = type(child) + if child_key not in self._control_map: + raise TypeError("Invalid child type {0!s} supplied".format(child_key)) + self._flight.add_child(child) - if isinstance(child, FlightLine): - self._flight_lines.appendRow(FlightLineController(child, self)) - elif isinstance(child, DataFile): - control = DataFileController(child, self) - self._data_files.appendRow(control) - # self.set_active_child(control) - elif isinstance(child, Gravimeter): - self.log.warning("Adding Gravimeter's to Flights is not yet implemented.") - else: - self.log.warning("Child of type %s could not be added to flight.", str(type(child))) - return False - return True + control = self._control_map[child_key](child, self) + self._child_map[child_key].appendRow(control) + return control def remove_child(self, child: Union[FlightLine, DataFile], row: int, confirm: bool = True) -> bool: """ @@ -251,39 +265,37 @@ def remove_child(self, child: Union[FlightLine, DataFile], row: int, confirm: bo or on a row/child mis-match """ - if confirm: + if type(child) not in self._control_map: + raise TypeError("Invalid child type supplied") + if confirm: # pragma: no cover if not helpers.confirm_action("Confirm Deletion", "Are you sure you want to delete %s" % str(child), self.get_parent().get_parent()): return False - if not self._flight.remove_child(child): - return False - if isinstance(child, FlightLine): - self._flight_lines.removeRow(row) - elif isinstance(child, DataFile): - self._data_files.removeRow(row) - else: - self.log.warning("Child of type: (%s) not removed from flight.", str(type(child))) - return False + self._flight.remove_child(child) + self._child_map[type(child)].removeRow(row) return True - def get_child(self, uid: Union[str, OID]) -> Union[FlightLineController, None]: + def get_child(self, uid: Union[str, OID]) -> Union[FlightLineController, DataFileController, None]: """Retrieve a child controller by UIU A string base_uuid can be passed, or an :obj:`OID` object for comparison """ # TODO: Should this also search datafiles? - for item in self._flight_lines.items(): # type: FlightLineController + for item in itertools.chain(self._flight_lines.items(), # pragma: no branch + self._data_files.items()): if item.uid == uid: return item def load_data(self, datafile: DataFileController) -> DataFrame: + if self.get_parent() is None: + raise LoadError("Flight has no parent or HDF Controller") try: return self.get_parent().hdf5store.load_data(datafile.data(Qt.UserRole)) - except OSError: - return None + except OSError as e: + raise LoadError from e - def set_name(self): + def set_name(self): # pragma: no cover name: str = helpers.get_input("Set Name", "Enter a new name:", self._flight.name) if name: self.set_attr('name', name) diff --git a/dgp/core/controllers/gravimeter_controller.py b/dgp/core/controllers/gravimeter_controller.py index 9fe56ac..9806f28 100644 --- a/dgp/core/controllers/gravimeter_controller.py +++ b/dgp/core/controllers/gravimeter_controller.py @@ -1,31 +1,31 @@ # -*- coding: utf-8 -*- from PyQt5.QtCore import Qt -from PyQt5.QtGui import QStandardItem -from dgp.core.controllers.controller_interfaces import IAirborneController +from dgp.core.oid import OID +from dgp.core.controllers.controller_interfaces import IAirborneController, IMeterController from dgp.core.controllers.controller_helpers import get_input -from dgp.core.controllers.controller_mixins import AttributeProxy from dgp.core.models.meter import Gravimeter -class GravimeterController(QStandardItem, AttributeProxy): - def __init__(self, meter: Gravimeter, parent: IAirborneController): +class GravimeterController(IMeterController): + + def __init__(self, meter: Gravimeter, parent: IAirborneController = None): super().__init__(meter.name) self.setEditable(False) self.setData(meter, role=Qt.UserRole) - self._meter: Gravimeter = meter - self._project_controller = parent + self._meter = meter # type: Gravimeter + self._parent = parent self._bindings = [ ('addAction', ('Delete <%s>' % self._meter.name, - (lambda: self.project.remove_child(self._meter, self.row(), True)))), - ('addAction', ('Rename', self.set_name)) + (lambda: self.get_parent().remove_child(self._meter, self.row(), True)))), + ('addAction', ('Rename', self.set_name_dlg)) ] @property - def project(self) -> IAirborneController: - return self._project_controller + def uid(self) -> OID: + return self._meter.uid @property def proxied(self) -> object: @@ -35,20 +35,22 @@ def proxied(self) -> object: def menu_bindings(self): return self._bindings - def set_name(self): + def get_parent(self) -> IAirborneController: + return self._parent + + def set_parent(self, parent: IAirborneController) -> None: + self._parent = parent + + def update(self): + self.setData(self._meter.name, Qt.DisplayRole) + + def set_name_dlg(self): # pragma: no cover name = get_input("Set Name", "Enter a new name:", self._meter.name) if name: - self._meter.name = name - self.setData(name, role=Qt.DisplayRole) + self.set_attr('name', name) def clone(self): - return GravimeterController(self._meter, self.project) - - def add_child(self, child) -> None: - raise ValueError("Gravimeter does not support child objects.") - - def remove_child(self, child, row: int) -> None: - raise ValueError("Gravimeter does not have child objects.") + return GravimeterController(self._meter, self.get_parent()) def __hash__(self): return hash(self._meter.uid) diff --git a/dgp/core/controllers/project_controllers.py b/dgp/core/controllers/project_controllers.py index da88c90..db1afff 100644 --- a/dgp/core/controllers/project_controllers.py +++ b/dgp/core/controllers/project_controllers.py @@ -1,19 +1,19 @@ # -*- coding: utf-8 -*- import functools -import inspect import itertools import logging import shlex import sys from pathlib import Path from pprint import pprint -from typing import Optional, Union, Generator, Callable, Any +from typing import Union -from PyQt5.QtCore import Qt, QProcess, QThread, pyqtSignal, QObject +from PyQt5.QtCore import Qt, QProcess, QObject from PyQt5.QtGui import QStandardItem, QBrush, QColor, QStandardItemModel, QIcon from PyQt5.QtWidgets import QWidget from pandas import DataFrame +from dgp.core.file_loader import FileLoader from dgp.core.oid import OID from dgp.core.controllers.controller_interfaces import IAirborneController, IFlightController from .hdf5_controller import HDFController @@ -40,35 +40,12 @@ MTR_ICON = ":/icons/meter_config.png" -class FileLoader(QThread): - completed = pyqtSignal(DataFrame, Path) - error = pyqtSignal(str) - - def __init__(self, path: Path, method: Callable, parent, **kwargs): - super().__init__(parent=parent) - self.log = logging.getLogger(__name__) - self._path = Path(path) - self._method = method - self._kwargs = kwargs - - def run(self): - try: - sig = inspect.signature(self._method) - kwargs = {k: v for k, v in self._kwargs.items() if k in sig.parameters} - result = self._method(str(self._path), **kwargs) - except Exception as e: - self.log.exception("Error loading datafile: %s" % str(self._path)) - self.error.emit(str(e)) - else: - self.completed.emit(result, self._path) - - class AirborneProjectController(IAirborneController, AttributeProxy): - def __init__(self, project: AirborneProject, parent: QObject = None): + def __init__(self, project: AirborneProject): super().__init__(project.name) self.log = logging.getLogger(__name__) - self._parent = parent self._project = project + self._parent = None self._hdfc = HDFController(self._project.path) self._active = None @@ -81,6 +58,9 @@ def __init__(self, project: AirborneProject, parent: QObject = None): self.meters = ProjectFolder("Gravimeters", MTR_ICON) self.appendRow(self.meters) + self._child_map = {Flight: self.flights, + Gravimeter: self.meters} + for flight in self.project.flights: controller = FlightController(flight, parent=self) self.flights.appendRow(controller) @@ -94,10 +74,18 @@ def __init__(self, project: AirborneProject, parent: QObject = None): ('addAction', ('Show in Explorer', self.show_in_explorer)) ] + @property + def uid(self) -> OID: + return self._project.uid + @property def proxied(self) -> object: return self._project + @property + def project(self) -> Union[GravityProject, AirborneProject]: + return self._project + @property def path(self) -> Path: return self._project.path @@ -110,10 +98,6 @@ def menu_bindings(self): def hdf5store(self) -> HDFController: return self._hdfc - @property - def project(self) -> Union[GravityProject, AirborneProject]: - return self._project - @property def meter_model(self) -> QStandardItemModel: return self.meters.internal_model @@ -122,27 +106,13 @@ def meter_model(self) -> QStandardItemModel: def flight_model(self) -> QStandardItemModel: return self.flights.internal_model - def properties(self): - print(self.__class__.__name__) - - def get_parent(self) -> Union[QObject, QWidget, None]: + def get_parent_widget(self) -> Union[QObject, QWidget, None]: return self._parent - def set_parent(self, value: Union[QObject, QWidget]) -> None: + def set_parent_widget(self, value: Union[QObject, QWidget]) -> None: self._parent = value - def set_attr(self, key: str, value: Any): - if key in self.__class__.__dict__ and isinstance(self.__class__.__dict__[key], property): - setattr(self._project, key, value) - self.update() - else: - raise AttributeError("Attribute %s cannot be set for <%s> %s" % ( - key, self.__class__.__name__, self._project.name)) - def add_child(self, child: Union[Flight, Gravimeter]) -> Union[FlightController, GravimeterController, None]: - print("Adding child to project") - self.project.add_child(child) - self.update() if isinstance(child, Flight): controller = FlightController(child, parent=self) self.flights.appendRow(controller) @@ -150,25 +120,24 @@ def add_child(self, child: Union[Flight, Gravimeter]) -> Union[FlightController, controller = GravimeterController(child, parent=self) self.meters.appendRow(controller) else: - print("Invalid child: " + str(type(child))) - return + raise ValueError("{0!r} is not a valid child type for {1.__name__}".format(child, self.__class__)) + self.project.add_child(child) + self.update() return controller def remove_child(self, child: Union[Flight, Gravimeter], row: int, confirm=True): - if confirm: - if not confirm_action("Confirm Deletion", "Are you sure you want to delete %s" - % child.name): + if not isinstance(child, (Flight, Gravimeter)): + raise ValueError("{0!r} is not a valid child object".format(child)) + if confirm: # pragma: no cover + if not confirm_action("Confirm Deletion", + "Are you sure you want to delete {!s}" + .format(child.name)): return self.project.remove_child(child.uid) + self._child_map[type(child)].removeRow(row) self.update() - if isinstance(child, Flight): - self.flights.removeRow(row) - elif isinstance(child, Gravimeter): - self.meters.removeRow(row) - # TODO: Change this to get_child(uid: OID) ? - def get_child(self, uid: Union[str, OID]) -> Union[FlightController, GravimeterController, - None]: + def get_child(self, uid: Union[str, OID]) -> Union[FlightController, GravimeterController, None]: for child in itertools.chain(self.flights.items(), self.meters.items()): if child.uid == uid: return child @@ -182,16 +151,20 @@ def set_active_child(self, child: IFlightController, emit: bool = True): for ctrl in self.flights.items(): # type: QStandardItem ctrl.setBackground(BASE_COLOR) child.setBackground(ACTIVE_COLOR) - if emit: + if emit and self.model() is not None: # pragma: no cover self.model().flight_changed.emit(child) + else: + raise ValueError("Child of type {0!s} cannot be set to active.".format(type(child))) - def set_name(self): + def save(self, to_file=True): + return self.project.to_json(indent=2, to_file=to_file) + + def set_name(self): # pragma: no cover new_name = get_input("Set Project Name", "Enter a Project Name", self.project.name) if new_name: - self.project.name = new_name - self.setData(new_name, Qt.DisplayRole) + self.set_attr('name', new_name) - def show_in_explorer(self): + def show_in_explorer(self): # pragma: no cover # TODO Linux KDE/Gnome file browser launch ppath = str(self.project.path.resolve()) if sys.platform == 'darwin': @@ -207,22 +180,22 @@ def show_in_explorer(self): QProcess.startDetached(script, shlex.split(args)) # TODO: What to do about these dialog methods - it feels wrong here - def add_flight(self): - dlg = AddFlightDialog(project=self, parent=self.get_parent()) + def add_flight(self): # pragma: no cover + dlg = AddFlightDialog(project=self, parent=self.get_parent_widget()) return dlg.exec_() - def add_gravimeter(self): + def add_gravimeter(self): # pragma: no cover """Launch a Dialog to import a Gravimeter configuration""" - dlg = AddGravimeterDialog(self, parent=self.get_parent()) + dlg = AddGravimeterDialog(self, parent=self.get_parent_widget()) return dlg.exec_() - def update(self): + def update(self): # pragma: no cover """Emit an update event from the parent Model, signalling that data has been added/removed/modified in the project.""" if self.model() is not None: self.model().project_changed.emit() - def _post_load(self, datafile: DataFile, data: DataFrame): + def _post_load(self, datafile: DataFile, data: DataFrame): # pragma: no cover if self.hdf5store.save_data(data, datafile): self.log.info("Data imported and saved to HDF5 Store") return @@ -243,7 +216,8 @@ def _post_load(self, datafile: DataFile, data: DataFrame): # new_gravity, new_trajectory = align_frames(gravity, trajectory, # interp_only=fields) - def load_file(self, datatype: DataTypes = DataTypes.GRAVITY, destination: IFlightController = None): + def load_file_dlg(self, datatype: DataTypes = DataTypes.GRAVITY, + destination: IFlightController = None): # pragma: no cover def load_data(datafile: DataFile, params: dict): pprint(params) if datafile.group == 'gravity': @@ -253,31 +227,14 @@ def load_data(datafile: DataFile, params: dict): else: print("Unrecognized data group: " + datafile.group) return - loader = FileLoader(datafile.source_path, method, parent=self.get_parent(), **params) + loader = FileLoader(datafile.source_path, method, parent=self.get_parent_widget(), **params) loader.completed.connect(functools.partial(self._post_load, datafile)) # TODO: Connect completed to add_child method of the flight loader.start() - dlg = DataImportDialog(self, datatype, parent=self.get_parent()) + dlg = DataImportDialog(self, datatype, parent=self.get_parent_widget()) if destination is not None: dlg.set_initial_flight(destination) dlg.load.connect(load_data) dlg.exec_() - def save(self): - print("Saving project") - return self.project.to_json(indent=2, to_file=True) - - -class MarineProjectController: - def load_file(self, ftype, destination: Optional[Any] = None) -> None: - pass - - def set_active(self, entity, **kwargs): - pass - - def add_child(self, child): - pass - - def remove_child(self, child, row: int, confirm: bool = True): - pass diff --git a/dgp/core/file_loader.py b/dgp/core/file_loader.py new file mode 100644 index 0000000..333b127 --- /dev/null +++ b/dgp/core/file_loader.py @@ -0,0 +1,34 @@ +# -*- coding: utf-8 -*- +import inspect +import logging +from pathlib import Path +from typing import Callable + +from PyQt5.QtCore import QThread +from PyQt5.QtCore import pyqtSignal +from pandas import DataFrame + + +class FileLoader(QThread): + completed = pyqtSignal(DataFrame, Path) + error = pyqtSignal(Exception) + + def __init__(self, path: Path, method: Callable, parent, **kwargs): + super().__init__(parent=parent) + self.log = logging.getLogger(__name__) + self._path = Path(path) + self._method = method + self._kwargs = kwargs + + def run(self): + try: + sig = inspect.signature(self._method) + kwargs = {k: v for k, v in self._kwargs.items() if k in sig.parameters} + result = self._method(str(self._path), **kwargs) + except Exception as e: + self.log.exception("Error loading datafile: %s" % str(self._path)) + self.error.emit(e) + else: + self.completed.emit(result, self._path) + + diff --git a/dgp/core/models/flight.py b/dgp/core/models/flight.py index 113b6d0..a271059 100644 --- a/dgp/core/models/flight.py +++ b/dgp/core/models/flight.py @@ -146,7 +146,7 @@ def add_child(self, child: Union[FlightLine, DataFile, Gravimeter]) -> None: elif isinstance(child, Gravimeter): self._meter = child.uid.base_uuid else: - raise ValueError("Invalid child type supplied: <%s>" % str(type(child))) + raise TypeError("Invalid child type supplied: <%s>" % str(type(child))) child.set_parent(self) def remove_child(self, child: Union[FlightLine, DataFile, OID]) -> bool: diff --git a/dgp/core/models/project.py b/dgp/core/models/project.py index 728b6b3..cf93bbd 100644 --- a/dgp/core/models/project.py +++ b/dgp/core/models/project.py @@ -309,7 +309,3 @@ def remove_child(self, child_id: OID) -> bool: return True else: return super().remove_child(child_id) - - -class MarineProject(GravityProject): - pass diff --git a/dgp/gui/dialog/add_flight_dialog.py b/dgp/gui/dialog/add_flight_dialog.py index 1171df2..739116a 100644 --- a/dgp/gui/dialog/add_flight_dialog.py +++ b/dgp/gui/dialog/add_flight_dialog.py @@ -48,7 +48,7 @@ def accept(self): self._flight.set_attr('notes', notes) self._flight.set_attr('sequence', sequence) self._flight.set_attr('duration', duration) - self._flight.add_child(meter) + # self._flight.add_child(meter) else: # Create new flight and add it to project flt = Flight(self.qle_flight_name.text(), date=date, diff --git a/tests/test_dialogs.py b/tests/test_dialogs.py index 4b3b7af..87fc1ee 100644 --- a/tests/test_dialogs.py +++ b/tests/test_dialogs.py @@ -6,9 +6,9 @@ from .context import APP +import PyQt5.QtTest as QtTest from PyQt5.QtCore import Qt from PyQt5.QtTest import QTest -import PyQt5.QtTest as QtTest from PyQt5.QtWidgets import QDialogButtonBox from dgp.core.models.flight import Flight @@ -100,6 +100,8 @@ def test_edit_flight_dialog(self, airborne_prj): dlg.qle_flight_name.clear() QTest.keyClicks(dlg.qle_flight_name, "Flt-2") QTest.mouseClick(dlg.qdbb_dialog_btns.button(QDialogButtonBox.Ok), Qt.LeftButton) + # Note: use dlg.accept() for debugging as it will correctly generate a stack trace + # dlg.accept() assert "Flt-2" == flt.name def test_add_gravimeter_dialog(self, airborne_prj): diff --git a/tests/test_loader.py b/tests/test_loader.py index 6535fd0..9dd6781 100644 --- a/tests/test_loader.py +++ b/tests/test_loader.py @@ -1,3 +1,56 @@ # -*- coding: utf-8 -*- # TODO: Tests for new file loader method in core/controllers/project_controller::FileLoader +from pathlib import Path + +import pytest +from PyQt5.QtTest import QSignalSpy +from pandas import DataFrame + +from .context import APP + +from dgp.core.file_loader import FileLoader + +TEST_FILE_GRAV = 'tests/sample_gravity.csv' + + +def mock_loader(*args, **kwargs): + # return args, kwargs + return DataFrame() + + +def mock_failing_loader(*args, **kwargs): + raise FileNotFoundError + + +def test_load_mock(): + loader = FileLoader(Path(TEST_FILE_GRAV), mock_loader, APP) + spy_complete = QSignalSpy(loader.completed) + spy_error = QSignalSpy(loader.error) + + assert 0 == len(spy_complete) + assert 0 == len(spy_error) + assert not loader.isRunning() + + loader.run() + + assert 1 == len(spy_complete) + assert 0 == len(spy_error) + + +def test_load_failure(): + called = False + + def _error_handler(exception: Exception): + assert isinstance(exception, Exception) + nonlocal called + called = True + + loader = FileLoader(Path(), mock_failing_loader, APP) + loader.error.connect(_error_handler) + spy_err = QSignalSpy(loader.error) + assert 0 == len(spy_err) + + loader.run() + assert 1 == len(spy_err) + assert called diff --git a/tests/test_project_controllers.py b/tests/test_project_controllers.py index c711d41..531d793 100644 --- a/tests/test_project_controllers.py +++ b/tests/test_project_controllers.py @@ -1,21 +1,33 @@ # -*- coding: utf-8 -*- import random +import uuid from datetime import datetime from pathlib import Path import pytest from PyQt5.QtCore import Qt, QAbstractItemModel +from PyQt5.QtGui import QStandardItemModel +from pandas import DataFrame -from .context import APP +from dgp.core.controllers.flightline_controller import FlightLineController +from dgp.core.controllers.project_controllers import AirborneProjectController +from dgp.core.models.project import AirborneProject +from dgp.core.controllers.controller_mixins import AttributeProxy +from dgp.core.controllers.controller_interfaces import IChild, IMeterController, IParent +from dgp.core.controllers.gravimeter_controller import GravimeterController +from dgp.core.models.meter import Gravimeter from dgp.core.controllers.datafile_controller import DataFileController from dgp.core.models.data import DataFile -from dgp.core.controllers.flight_controller import FlightController +from dgp.core.controllers.flight_controller import FlightController, LoadError from dgp.core.models.flight import Flight, FlightLine +from .context import APP @pytest.fixture -def flight_ctrl(): - pass +def project(tmpdir): + prj = AirborneProject(name=str(uuid.uuid4()), path=Path(tmpdir)) + prj_ctrl = AirborneProjectController(prj) + return prj_ctrl @pytest.fixture() @@ -28,7 +40,6 @@ def _factory(): return FlightLine(datetime.now().timestamp(), datetime.now().timestamp() + round(random.random() * 1000), seq) - return _factory @@ -48,50 +59,202 @@ def test_datafile_controller(): assert isinstance(fl_controller._data_files.child(0), DataFileController) -def test_gravimeter_controller(): - pass +def test_gravimeter_controller(tmpdir): + project = AirborneProjectController(AirborneProject(name="TestPrj", path=Path(tmpdir))) + meter = Gravimeter('AT1A-Test') + meter_ctrl = GravimeterController(meter) + + assert isinstance(meter_ctrl, IChild) + assert isinstance(meter_ctrl, IMeterController) + assert isinstance(meter_ctrl, AttributeProxy) + assert not isinstance(meter_ctrl, IParent) + + assert meter == meter_ctrl.data(Qt.UserRole) + with pytest.raises(AttributeError): + meter_ctrl.set_attr('invalid_attr', 1234) -def test_flight_controller(make_line): + assert 'AT1A-Test' == meter_ctrl.get_attr('name') + assert meter_ctrl.get_parent() is None + meter_ctrl.set_parent(project) + assert project == meter_ctrl.get_parent() + + assert hash(meter_ctrl) + + meter_ctrl_clone = meter_ctrl.clone() + assert meter == meter_ctrl_clone.proxied + + assert "AT1A-Test" == meter_ctrl.data(Qt.DisplayRole) + meter_ctrl.set_attr('name', "AT1A-New") + assert "AT1A-New" == meter_ctrl.data(Qt.DisplayRole) + + +def test_flight_controller(make_line, project: AirborneProjectController): flight = Flight('Test-Flt-1') - fc = FlightController(flight) + line0 = make_line() + data0 = DataFile('trajectory', datetime(2018, 5, 10), Path('./data0.dat')) + data1 = DataFile('gravity', datetime(2018, 5, 15), Path('./data1.dat')) + flight.add_child(line0) + flight.add_child(data0) + flight.add_child(data1) + + _traj_data = [0, 1, 5, 9] + _grav_data = [2, 8, 1, 0] + # Load test data into temporary project HDFStore + project.hdf5store.save_data(DataFrame(_traj_data), data0) + project.hdf5store.save_data(DataFrame(_grav_data), data1) + + assert data0 in flight.data_files + assert data1 in flight.data_files + assert 1 == len(flight.flight_lines) + assert 2 == len(flight.data_files) + + fc = project.add_child(flight) + assert hash(fc) + assert str(fc) == str(flight) + assert not fc.is_active() + project.set_active_child(fc) + assert fc.is_active() assert flight.uid == fc.uid assert flight.name == fc.data(Qt.DisplayRole) + assert fc._active_gravity is not None + assert fc._active_trajectory is not None + assert DataFrame(_traj_data).equals(fc.trajectory) + assert DataFrame(_grav_data).equals(fc.gravity) + line1 = make_line() line2 = make_line() - line3 = make_line() - - data1 = DataFile('gravity', datetime(2018, 5, 15), Path('./data1.dat')) - data2 = DataFile('gravity', datetime(2018, 5, 25), Path('./data2.dat')) assert fc.add_child(line1) assert fc.add_child(line2) - assert fc.add_child(data1) - assert fc.add_child(data2) + + # The data doesn't exist for this DataFile + data2 = DataFile('gravity', datetime(2018, 5, 25), Path('./data2.dat')) + data2_ctrl = fc.add_child(data2) + assert isinstance(data2_ctrl, DataFileController) + fc.set_active_child(data2_ctrl) + assert fc.get_active_child() != data2_ctrl assert line1 in flight.flight_lines assert line2 in flight.flight_lines - assert data1 in flight.data_files assert data2 in flight.data_files model = fc.lines_model assert isinstance(model, QAbstractItemModel) - assert 2 == model.rowCount() + assert 3 == model.rowCount() - lines = [line1, line2] + lines = [line0, line1, line2] for i in range(model.rowCount()): index = model.index(i, 0) child = model.data(index, Qt.UserRole) assert lines[i] == child - with pytest.raises(ValueError): + # Test use of lines generator + for i, line in enumerate(fc.lines): + assert lines[i] == line + + with pytest.raises(TypeError): fc.add_child({1: "invalid child"}) - fc.add_child(line3) + with pytest.raises(TypeError): + fc.set_active_child("not a child") + fc.set_parent(None) + with pytest.raises(LoadError): + fc.load_data(data0) -def test_airborne_project_controller(): - pass + # Test child removal + line1_ctrl = fc.get_child(line1.uid) + assert isinstance(line1_ctrl, FlightLineController) + assert line1.uid == line1_ctrl.uid + data1_ctrl = fc.get_child(data1.uid) + assert isinstance(data1_ctrl, DataFileController) + assert data1.uid == data1_ctrl.uid + + assert 3 == len(list(fc.lines)) + assert line1 in flight.flight_lines + fc.remove_child(line1, line1_ctrl.row(), confirm=False) + assert 2 == len(list(fc.lines)) + assert line1 not in flight.flight_lines + + assert 3 == fc._data_files.rowCount() + assert data1 in flight.data_files + fc.remove_child(data1, data1_ctrl.row(), confirm=False) + assert 2 == fc._data_files.rowCount() + assert data1 not in flight.data_files + + with pytest.raises(TypeError): + fc.remove_child("Not a real child", 1, confirm=False) + + +def test_airborne_project_controller(tmpdir): + _name = str(uuid.uuid4().hex) + _path = Path(tmpdir).resolve() + flt0 = Flight("Flt0") + mtr0 = Gravimeter("AT1A-X") + project = AirborneProject(name=_name, path=_path) + project.add_child(flt0) + project.add_child(mtr0) + + assert 1 == len(project.flights) + assert 1 == len(project.gravimeters) + + project_ctrl = AirborneProjectController(project) + assert project == project_ctrl.proxied + assert project_ctrl.path == project.path + + project_ctrl.set_parent_widget(APP) + assert APP == project_ctrl.get_parent_widget() + + flight = Flight("Flt1") + flight2 = Flight("Flt2") + meter = Gravimeter("AT1A-10") + + fc = project_ctrl.add_child(flight) + assert isinstance(fc, FlightController) + assert flight in project.flights + mc = project_ctrl.add_child(meter) + assert isinstance(mc, GravimeterController) + assert meter in project.gravimeters + + with pytest.raises(ValueError): + project_ctrl.add_child("Invalid Child Object (Str)") + + assert project == project_ctrl.data(Qt.UserRole) + assert _name == project_ctrl.data(Qt.DisplayRole) + assert str(_path) == project_ctrl.data(Qt.ToolTipRole) + assert project.uid == project_ctrl.uid + assert _path == project.path + + assert isinstance(project_ctrl.meter_model, QStandardItemModel) + assert isinstance(project_ctrl.flight_model, QStandardItemModel) + + assert project_ctrl.get_active_child() is None + project_ctrl.set_active_child(fc) + assert fc == project_ctrl.get_active_child() + with pytest.raises(ValueError): + project_ctrl.set_active_child(mc) + + project_ctrl.add_child(flight2) + + fc2 = project_ctrl.get_child(flight2.uid) + assert isinstance(fc2, FlightController) + assert flight2 == fc2.proxied + + assert 3 == project_ctrl.flights.rowCount() + project_ctrl.remove_child(flight2, fc2.row(), confirm=False) + assert 2 == project_ctrl.flights.rowCount() + assert project_ctrl.get_child(fc2.uid) is None + + assert 2 == project_ctrl.meters.rowCount() + project_ctrl.remove_child(meter, mc.row(), confirm=False) + assert 1 == project_ctrl.meters.rowCount() + + with pytest.raises(ValueError): + project_ctrl.remove_child("Not a child", 2) + + jsons = project_ctrl.save(to_file=False) + assert isinstance(jsons, str) diff --git a/tests/test_project_models.py b/tests/test_project_models.py index 05f9929..1d238ce 100644 --- a/tests/test_project_models.py +++ b/tests/test_project_models.py @@ -64,7 +64,7 @@ def test_flight_actions(make_flight, make_line): f1.add_child(line1) assert 1 == len(f1.flight_lines) - with pytest.raises(ValueError): + with pytest.raises(TypeError): f1.add_child('not a flight line') assert line1 in f1.flight_lines From 4fe79d4b863fa1846de98e95816eb4c544b4dd55 Mon Sep 17 00:00:00 2001 From: Zachery Brady Date: Tue, 3 Jul 2018 12:49:28 -0600 Subject: [PATCH 126/236] Add Appveyor CI build script Disable Python3.5 build on Appveyor Python3.5 and PyQt5 encounters an ImportError due to a missing DLL. This seems to be specific to 3.5, as the same build succeeds with Python 3.6 Add appveyor badge --- .appveyor.yml | 22 +++++++++++++++++++ README.rst | 6 +++++ dgp/core/controllers/flight_controller.py | 7 +++--- dgp/core/controllers/flightline_controller.py | 2 +- requirements.txt | 1 - 5 files changed, 32 insertions(+), 6 deletions(-) create mode 100644 .appveyor.yml diff --git a/.appveyor.yml b/.appveyor.yml new file mode 100644 index 0000000..319bb54 --- /dev/null +++ b/.appveyor.yml @@ -0,0 +1,22 @@ +environment: + matrix: +# - PYTHON: "C:\\Python35-x64" + - PYTHON: "C:\\Python36-x64" + +build: false + +install: + - cmd: set PATH=%PYTHON%\;%PYTHON%\Scripts;%PATH% + - cmd: echo %PATH% + - cmd: dir %PYTHON% + - python --version + - "python -m pip install -U pip setuptools" + - "python -m pip install Cython==0.28.3" + - "python -m pip install -r requirements.txt" + - "python -m pip install pytest-cov coveralls" + +before_test: + - "python utils/build_uic.py dgp/gui/ui" + +test_script: + - "pytest --cov=dgp tests" diff --git a/README.rst b/README.rst index b1860bf..a1c6799 100644 --- a/README.rst +++ b/README.rst @@ -3,6 +3,12 @@ DGP (Dynamic Gravity Processor) .. image:: https://travis-ci.org/DynamicGravitySystems/DGP.svg?branch=master :target: https://travis-ci.org/DynamicGravitySystems/DGP +.. image:: https://coveralls.io/repos/github/DynamicGravitySystems/DGP/badge.svg?branch=feature%2Fproject-structure + :target: https://coveralls.io/github/DynamicGravitySystems/DGP?branch=feature%2Fproject-structure + +.. image:: https://ci.appveyor.com/api/projects/status/np3s77n1s8hpvn5u?svg=true + :target: https://ci.appveyor.com/api/projects/status/np3s77n1s8hpvn5u?svg=true + What is it ---------- **DGP** is an library as well an application for processing gravity data collected diff --git a/dgp/core/controllers/flight_controller.py b/dgp/core/controllers/flight_controller.py index 652767a..a467a3d 100644 --- a/dgp/core/controllers/flight_controller.py +++ b/dgp/core/controllers/flight_controller.py @@ -28,7 +28,6 @@ class LoadError(Exception): pass - class FlightController(IFlightController): """ FlightController is a wrapper around :obj:`Flight` objects, and provides @@ -54,7 +53,7 @@ def __init__(self, flight: Flight, parent: IAirborneController = None): """Assemble the view/controller repr from the base flight object.""" super().__init__() self.log = logging.getLogger(__name__) - self._flight: Flight = flight + self._flight = flight self._parent = parent self.setData(flight, Qt.UserRole) self.setEditable(False) @@ -83,8 +82,8 @@ def __init__(self, flight: Flight, parent: IAirborneController = None): for file in self._flight.data_files: # type: DataFile self._data_files.appendRow(DataFileController(file, self)) - self._active_gravity: DataFileController = None - self._active_trajectory: DataFileController = None + self._active_gravity = None # type: DataFileController + self._active_trajectory = None # type: DataFileController # Set the first available gravity/trajectory file to active for file_ctrl in self._data_files.items(): # type: DataFileController diff --git a/dgp/core/controllers/flightline_controller.py b/dgp/core/controllers/flightline_controller.py index c7c2672..e847dbf 100644 --- a/dgp/core/controllers/flightline_controller.py +++ b/dgp/core/controllers/flightline_controller.py @@ -14,7 +14,7 @@ class FlightLineController(QStandardItem, AttributeProxy): def __init__(self, flightline: FlightLine, controller: IFlightController): super().__init__() self._flightline = flightline - self._flight_ctrl: IFlightController = controller + self._flight_ctrl = controller self.setData(flightline, Qt.UserRole) self.setText(str(self._flightline)) self.setIcon(QIcon(":/icons/AutosizeStretch_16x.png")) diff --git a/requirements.txt b/requirements.txt index 97f55b6..c657318 100644 --- a/requirements.txt +++ b/requirements.txt @@ -1,7 +1,6 @@ alabaster==0.7.10 atomicwrites==1.1.5 attrs==18.1.0 -Babel==2.5.0 certifi==2017.7.27.1 chardet==3.0.4 coverage==4.4.1 From 533f10fb04bb99bcb6ae3081d4983520c1735438 Mon Sep 17 00:00:00 2001 From: Zachery Brady Date: Tue, 3 Jul 2018 13:13:25 -0600 Subject: [PATCH 127/236] Update scipy to 1.1.0 (Fix installation on Windows Pltfm) --- requirements.txt | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/requirements.txt b/requirements.txt index c657318..ed49f55 100644 --- a/requirements.txt +++ b/requirements.txt @@ -15,13 +15,13 @@ pandas==0.20.3 pluggy==0.6.0 py==1.5.3 pyparsing==2.2.0 -PyQt5==5.9 +PyQt5==5.11.2 pyqtgraph==0.10.0 pytest==3.6.1 python-dateutil==2.7.3 pytz==2018.4 requests==2.18.4 -scipy==0.19.1 +scipy==1.1.0 sip==4.19.3 six==1.10.0 tables==3.4.2 From cbc5aff64dd4c3c3ef38ebf68d68c0e6e11a1372 Mon Sep 17 00:00:00 2001 From: Zachery Brady Date: Tue, 3 Jul 2018 16:00:50 -0600 Subject: [PATCH 128/236] Completed Dialog Tests Refactored old dialogs.py to old_dialogs.py and renamed dialog -> dialogs (package directory) Keeping old dialogs as example code for now, until all old features are re-implemented. Updated coveragerc to exclude compiled UIC files from coverage eval --- .coveragerc | 1 + .travis.yml | 5 +- README.rst | 2 +- dgp/core/controllers/flight_controller.py | 4 +- dgp/core/controllers/project_controllers.py | 6 +- dgp/gui/{dialog => dialogs}/__init__.py | 0 .../{dialog => dialogs}/add_flight_dialog.py | 3 +- .../add_gravimeter_dialog.py | 26 +-- .../create_project_dialog.py | 17 +- .../{dialog => dialogs}/data_import_dialog.py | 48 +++--- dgp/gui/main.py | 2 +- dgp/gui/{dialogs.py => old_dialogs.py} | 9 +- dgp/gui/splash.py | 2 +- dgp/gui/ui/data_import_dialog.ui | 6 +- tests/test_dialogs.py | 158 +++++++++++++++++- 15 files changed, 221 insertions(+), 68 deletions(-) rename dgp/gui/{dialog => dialogs}/__init__.py (100%) rename dgp/gui/{dialog => dialogs}/add_flight_dialog.py (96%) rename dgp/gui/{dialog => dialogs}/add_gravimeter_dialog.py (84%) rename dgp/gui/{dialog => dialogs}/create_project_dialog.py (87%) rename dgp/gui/{dialog => dialogs}/data_import_dialog.py (93%) rename dgp/gui/{dialogs.py => old_dialogs.py} (97%) diff --git a/.coveragerc b/.coveragerc index 91b14fc..dd8a43c 100644 --- a/.coveragerc +++ b/.coveragerc @@ -4,6 +4,7 @@ branch = True [report] omit = dgp/resources_rc.py + dgp/gui/ui/*.py exclude_lines = pragma: no cover diff --git a/.travis.yml b/.travis.yml index 665a471..dc58127 100644 --- a/.travis.yml +++ b/.travis.yml @@ -22,4 +22,7 @@ script: after_success: - coveralls notifications: - slack: polargeophysicsgroup:FO0QAgTctTetembHbEJq8hxP + slack: + rooms: + - polargeophysicsgroup:FO0QAgTctTetembHbEJq8hxP + on_success: change diff --git a/README.rst b/README.rst index a1c6799..23c728d 100644 --- a/README.rst +++ b/README.rst @@ -7,7 +7,7 @@ DGP (Dynamic Gravity Processor) :target: https://coveralls.io/github/DynamicGravitySystems/DGP?branch=feature%2Fproject-structure .. image:: https://ci.appveyor.com/api/projects/status/np3s77n1s8hpvn5u?svg=true - :target: https://ci.appveyor.com/api/projects/status/np3s77n1s8hpvn5u?svg=true + :target: https://ci.appveyor.com/project/bradyzp/dgp What is it ---------- diff --git a/dgp/core/controllers/flight_controller.py b/dgp/core/controllers/flight_controller.py index a467a3d..374c980 100644 --- a/dgp/core/controllers/flight_controller.py +++ b/dgp/core/controllers/flight_controller.py @@ -16,7 +16,7 @@ from dgp.core.models.flight import Flight, FlightLine from dgp.core.models.meter import Gravimeter from dgp.core.types.enumerations import DataTypes -from dgp.gui.dialog.add_flight_dialog import AddFlightDialog +from dgp.gui.dialogs.add_flight_dialog import AddFlightDialog from . import controller_helpers as helpers from .project_containers import ProjectFolder @@ -295,7 +295,7 @@ def load_data(self, datafile: DataFileController) -> DataFrame: raise LoadError from e def set_name(self): # pragma: no cover - name: str = helpers.get_input("Set Name", "Enter a new name:", self._flight.name) + name = helpers.get_input("Set Name", "Enter a new name:", self._flight.name) if name: self.set_attr('name', name) diff --git a/dgp/core/controllers/project_controllers.py b/dgp/core/controllers/project_controllers.py index db1afff..5841b11 100644 --- a/dgp/core/controllers/project_controllers.py +++ b/dgp/core/controllers/project_controllers.py @@ -22,9 +22,9 @@ from .project_containers import ProjectFolder from .controller_helpers import confirm_action, get_input from dgp.core.controllers.controller_mixins import AttributeProxy -from dgp.gui.dialog.add_flight_dialog import AddFlightDialog -from dgp.gui.dialog.add_gravimeter_dialog import AddGravimeterDialog -from dgp.gui.dialog.data_import_dialog import DataImportDialog +from dgp.gui.dialogs.add_flight_dialog import AddFlightDialog +from dgp.gui.dialogs.add_gravimeter_dialog import AddGravimeterDialog +from dgp.gui.dialogs.data_import_dialog import DataImportDialog from dgp.core.models.data import DataFile from dgp.core.models.flight import Flight from dgp.core.models.meter import Gravimeter diff --git a/dgp/gui/dialog/__init__.py b/dgp/gui/dialogs/__init__.py similarity index 100% rename from dgp/gui/dialog/__init__.py rename to dgp/gui/dialogs/__init__.py diff --git a/dgp/gui/dialog/add_flight_dialog.py b/dgp/gui/dialogs/add_flight_dialog.py similarity index 96% rename from dgp/gui/dialog/add_flight_dialog.py rename to dgp/gui/dialogs/add_flight_dialog.py index 739116a..d1f77f0 100644 --- a/dgp/gui/dialog/add_flight_dialog.py +++ b/dgp/gui/dialogs/add_flight_dialog.py @@ -64,8 +64,7 @@ def _set_flight(self, flight: IFlightController): self.qte_notes.setText(flight.notes) self.qsb_duration.setValue(flight.duration) self.qsb_sequence.setValue(flight.sequence) - if flight.date is not None: - self.qde_flight_date.setDate(flight.date) + self.qde_flight_date.setDate(flight.date) @classmethod def from_existing(cls, flight: IFlightController, diff --git a/dgp/gui/dialog/add_gravimeter_dialog.py b/dgp/gui/dialogs/add_gravimeter_dialog.py similarity index 84% rename from dgp/gui/dialog/add_gravimeter_dialog.py rename to dgp/gui/dialogs/add_gravimeter_dialog.py index b9a8653..1085a60 100644 --- a/dgp/gui/dialog/add_gravimeter_dialog.py +++ b/dgp/gui/dialogs/add_gravimeter_dialog.py @@ -1,10 +1,8 @@ # -*- coding: utf-8 -*- -import os from pathlib import Path from pprint import pprint from typing import Optional -from PyQt5.QtCore import Qt from PyQt5.QtGui import QIntValidator, QIcon, QStandardItemModel, QStandardItem from PyQt5.QtWidgets import QDialog, QWidget, QFileDialog, QListWidgetItem @@ -18,6 +16,7 @@ def __init__(self, project: IAirborneController, parent: Optional[QWidget] = Non super().__init__(parent) self.setupUi(self) self._project = project + self._valid_ext = ('.ini', '.txt', '.conf') AT1A = QListWidgetItem(QIcon(":/icons/dgs"), "AT1A") AT1M = QListWidgetItem(QIcon(":/icons/dgs"), "AT1M") @@ -41,18 +40,21 @@ def __init__(self, project: IAirborneController, parent: Optional[QWidget] = Non self.qtv_config_view.setModel(self._config_model) @property - def path(self): + def config_path(self): if not len(self.qle_config_path.text()): return None _path = Path(self.qle_config_path.text()) if not _path.exists(): return None + if not _path.is_file(): + return None + if _path.suffix not in self._valid_ext: + return None return _path def accept(self): if self.qle_config_path.text(): meter = Gravimeter.from_ini(Path(self.qle_config_path.text()), name=self.qle_name.text()) - pprint(meter.config) else: meter = Gravimeter(self.qle_name.text()) self._project.add_child(meter) @@ -60,30 +62,28 @@ def accept(self): super().accept() def _path_changed(self, text: str): - if self.path is not None: + if self.config_path is not None and self.config_path.exists(): self._preview_config() def get_sensor_type(self) -> str: - item = self.qlw_metertype.currentItem() - if item is not None: - return item.text() + return self.qlw_metertype.currentItem().text() - def _browse_config(self): + def _browse_config(self): # pragma: no cover # TODO: Look into useing getOpenURL methods for files on remote/network drives - path, _ = QFileDialog.getOpenFileName(self, "Select Configuration File", os.getcwd(), + path, _ = QFileDialog.getOpenFileName(self, "Select Configuration File", str(Path().resolve()), "Configuration (*.ini);;Any (*.*)") if path: self.qle_config_path.setText(path) - def _config_data_changed(self, item: QStandardItem): + def _config_data_changed(self, item: QStandardItem): # pragma: no cover # TODO: Implement this if desire to enable editing of config from the preview table index = self._config_model.index(item.row(), item.column()) sibling = self._config_model.index(item.row(), 0 if item.column() else 1) def _preview_config(self): - if self.path is None: + if self.config_path is None: return - config = Gravimeter.read_config(self.path) + config = Gravimeter.read_config(self.config_path) self._config_model.clear() self._config_model.setHorizontalHeaderLabels(["Config Key", "Value"]) diff --git a/dgp/gui/dialog/create_project_dialog.py b/dgp/gui/dialogs/create_project_dialog.py similarity index 87% rename from dgp/gui/dialog/create_project_dialog.py rename to dgp/gui/dialogs/create_project_dialog.py index 7552e48..3554443 100644 --- a/dgp/gui/dialog/create_project_dialog.py +++ b/dgp/gui/dialogs/create_project_dialog.py @@ -12,8 +12,8 @@ class CreateProjectDialog(QDialog, Ui_CreateProjectDialog): - def __init__(self): - super().__init__() + def __init__(self, parent=None): + super().__init__(parent=parent) self.setupUi(self) self._project = None @@ -33,7 +33,8 @@ def __init__(self): self.prj_type_list) dgs_marine.setData(Qt.UserRole, ProjectTypes.MARINE) - def show_message(self, message, **kwargs): + # TODO: Replace this with method to show warning in dialog + def show_message(self, message, **kwargs): # pragma: no cover """Shim to replace BaseDialog method""" print(message) @@ -68,23 +69,23 @@ def accept(self): return # TODO: Future implementation for Project types other than DGS AT1A - cdata = self.prj_type_list.currentItem().data(Qt.UserRole) - if cdata == ProjectTypes.AIRBORNE: + prj_type = self.prj_type_list.currentItem().data(Qt.UserRole) + if prj_type == ProjectTypes.AIRBORNE: name = str(self.prj_name.text()).rstrip() name = "".join([word.capitalize() for word in name.split(' ')]) path = Path(self.prj_dir.text()).joinpath(name) - if not path.exists(): + if not path.exists(): # pragma: no branch path.mkdir(parents=True) self._project = AirborneProject(name=name, path=path, description=self.qpte_notes.toPlainText()) - else: + else: # pragma: no cover self.show_message("Invalid Project Type (Not yet implemented)", log=logging.WARNING, color='red') return super().accept() - def select_dir(self): + def select_dir(self): # pragma: no cover path = QFileDialog.getExistingDirectory( self, "Select Project Parent Directory") if path: diff --git a/dgp/gui/dialog/data_import_dialog.py b/dgp/gui/dialogs/data_import_dialog.py similarity index 93% rename from dgp/gui/dialog/data_import_dialog.py rename to dgp/gui/dialogs/data_import_dialog.py index b93466b..5c155bd 100644 --- a/dgp/gui/dialog/data_import_dialog.py +++ b/dgp/gui/dialogs/data_import_dialog.py @@ -16,6 +16,8 @@ from dgp.core.types.enumerations import DataTypes from dgp.gui.ui.data_import_dialog import Ui_DataImportDialog +__all__ = ['DataImportDialog'] + class DataImportDialog(QDialog, Ui_DataImportDialog): load = pyqtSignal(DataFile, dict) @@ -72,8 +74,8 @@ def __init__(self, project: IAirborneController, self._meter_model = self.project.meter_model # type: QStandardItemModel self.qcb_gravimeter.setModel(self._meter_model) self.qpb_add_sensor.clicked.connect(self.project.add_gravimeter) - if self._meter_model.rowCount() == 0: - print("NO meters available") + # if self._meter_model.rowCount() == 0: + # print("NO meters available") self.qcb_gravimeter.setCurrentIndex(0) # Trajectory Widget @@ -99,22 +101,11 @@ def __init__(self, project: IAirborneController, self.qsw_advanced_properties.setCurrentIndex(self._type_map[datatype]) def set_initial_flight(self, flight: IFlightController): - for i in range(self._flight_model.rowCount()): + for i in range(self._flight_model.rowCount()): # pragma: no branch child = self._flight_model.item(i, 0) - if child.uid == flight.uid: + if child.uid == flight.uid: # pragma: no branch self.qcb_flight.setCurrentIndex(i) - return - - def _load_file(self): - # TODO: How to deal with type specific fields - file = DataFile(self.datatype.value.lower(), date=self.date, - source_path=self.file_path, name=self.qle_rename.text()) - param_map = self._params_map[self.datatype] - # Evaluate and build params dict - params = {key: value() for key, value in param_map.items()} - self.flight.add_child(file) - self.load.emit(file, params) - return True + break @property def project(self) -> IAirborneController: @@ -144,7 +135,7 @@ def date(self) -> datetime: _date: QDate = self.qde_date.date() return datetime(_date.year(), _date.month(), _date.day()) - def accept(self): + def accept(self): # pragma: no cover if self.file_path is None: self.ql_path.setStyleSheet("color: red") self.log.warning("Path cannot be empty.") @@ -164,7 +155,7 @@ def accept(self): raise TypeError("Unhandled DataType supplied to import dialog: %s" % str(self.datatype)) - def _copy_file(self): + def _copy_file(self): # pragma: no cover src = self.file_path dest_name = src.name if self.qle_rename.text(): @@ -176,11 +167,21 @@ def _copy_file(self): except IOError: self.log.exception("Unable to copy source file to project directory.") + def _load_file(self): + file = DataFile(self.datatype.value.lower(), date=self.date, + source_path=self.file_path, name=self.qle_rename.text()) + param_map = self._params_map[self.datatype] + # Evaluate and build params dict + params = {key: value() for key, value in param_map.items()} + self.flight.add_child(file) + self.load.emit(file, params) + return True + def _set_date(self): self.qde_date.setDate(self.flight.date) @pyqtSlot(name='_browse') - def _browse(self): + def _browse(self): # pragma: no cover path, _ = QFileDialog.getOpenFileName(self, "Browse for data file", str(self._browse_path), self._type_filters[self._datatype]) @@ -188,11 +189,12 @@ def _browse(self): self.qle_filepath.setText(path) @pyqtSlot(QListWidgetItem, QListWidgetItem, name='_datatype_changed') - def _datatype_changed(self, current: QListWidgetItem, previous: QListWidgetItem): + def _datatype_changed(self, current: QListWidgetItem, previous: QListWidgetItem): # pragma: no cover self._datatype = current.data(Qt.UserRole) self.qsw_advanced_properties.setCurrentIndex(self._type_map[self._datatype]) - def _filepath_changed(self, text: str): + @pyqtSlot(str, name='_filepath_changed') + def _filepath_changed(self, text: str): # pragma: no cover """ Detect attributes of file and display them in the dialog info section """ @@ -218,7 +220,7 @@ def _filepath_changed(self, text: str): self.qle_colcount.setText(str(col_count)) @pyqtSlot(int, name='_gravimeter_changed') - def _gravimeter_changed(self, index: int): + def _gravimeter_changed(self, index: int): # pragma: no cover meter_ctrl = self.project.meter_model.item(index) if not meter_ctrl: self.log.debug("No meter available") @@ -229,7 +231,7 @@ def _gravimeter_changed(self, index: int): self.qle_grav_format.setText(meter_ctrl.column_format) @pyqtSlot(int, name='_traj_timeformat_changed') - def _traj_timeformat_changed(self, index: int): + def _traj_timeformat_changed(self, index: int): # pragma: no cover timefmt = self._traj_timeformat_model.item(index) cols = ', '.join(timefmt.data(Qt.UserRole)) self.qle_traj_format.setText(cols) diff --git a/dgp/gui/main.py b/dgp/gui/main.py index caad2b5..9c46da1 100644 --- a/dgp/gui/main.py +++ b/dgp/gui/main.py @@ -18,7 +18,7 @@ from dgp.core.models.project import AirborneProject from dgp.gui.utils import (ConsoleHandler, LOG_FORMAT, LOG_LEVEL_MAP, LOG_COLOR_MAP, get_project_file) -from dgp.gui.dialog.create_project_dialog import CreateProjectDialog +from dgp.gui.dialogs.create_project_dialog import CreateProjectDialog from dgp.gui.workspace import FlightTab from dgp.gui.ui.main_window import Ui_MainWindow diff --git a/dgp/gui/dialogs.py b/dgp/gui/old_dialogs.py similarity index 97% rename from dgp/gui/dialogs.py rename to dgp/gui/old_dialogs.py index 2c3068d..0b7f5e6 100644 --- a/dgp/gui/dialogs.py +++ b/dgp/gui/old_dialogs.py @@ -14,7 +14,7 @@ PATH_ERR = "Path cannot be empty." -class BaseDialog(QtWidgets.QDialog): +class BaseDialog(QtWidgets.QDialog): # pragma: no cover """ BaseDialog is an attempt to standardize some common features in the program dialogs. @@ -131,7 +131,10 @@ def show_error(self, message): dlg.exec_() -class EditImportDialog(BaseDialog, edit_import_view.Ui_Dialog): +# TODO: EditImportDialog and PropertiesDialog are deprecated - keeping them for example code currently + + +class EditImportDialog(BaseDialog, edit_import_view.Ui_Dialog): # pragma: no cover """ Take lines of data with corresponding fields and populate custom Table Model Fields can be exchanged via a custom Selection Delegate, which provides a @@ -277,7 +280,7 @@ def _custom_label(self, index: QModelIndex): return -class PropertiesDialog(BaseDialog): +class PropertiesDialog(BaseDialog): # pragma: no cover def __init__(self, cls, parent=None): super().__init__(parent=parent) # Store label: data as dictionary diff --git a/dgp/gui/splash.py b/dgp/gui/splash.py index ceb146f..760dbb5 100644 --- a/dgp/gui/splash.py +++ b/dgp/gui/splash.py @@ -15,7 +15,7 @@ from dgp.core.models.project import AirborneProject, GravityProject from dgp.gui.main import MainWindow from dgp.gui.utils import ConsoleHandler, LOG_FORMAT, LOG_COLOR_MAP, get_project_file -from dgp.gui.dialog.create_project_dialog import CreateProjectDialog +from dgp.gui.dialogs.create_project_dialog import CreateProjectDialog splash_screen, _ = loadUiType('dgp/gui/ui/splash_screen.ui') diff --git a/dgp/gui/ui/data_import_dialog.ui b/dgp/gui/ui/data_import_dialog.ui index 0a627ad..688410f 100644 --- a/dgp/gui/ui/data_import_dialog.ui +++ b/dgp/gui/ui/data_import_dialog.ui @@ -552,7 +552,7 @@ - + 0 @@ -598,7 +598,7 @@ - btn_dialog + qdbb_buttons accepted() DataImportDialog accept() @@ -614,7 +614,7 @@ - btn_dialog + qdbb_buttons rejected() DataImportDialog reject() diff --git a/tests/test_dialogs.py b/tests/test_dialogs.py index 87fc1ee..ba87fbb 100644 --- a/tests/test_dialogs.py +++ b/tests/test_dialogs.py @@ -4,19 +4,23 @@ import pytest -from .context import APP import PyQt5.QtTest as QtTest from PyQt5.QtCore import Qt from PyQt5.QtTest import QTest from PyQt5.QtWidgets import QDialogButtonBox +from dgp.core.controllers.flight_controller import FlightController +from dgp.core.models.data import DataFile from dgp.core.models.flight import Flight from dgp.core.controllers.project_controllers import AirborneProjectController -from dgp.gui.dialog.add_gravimeter_dialog import AddGravimeterDialog -from dgp.gui.dialog.add_flight_dialog import AddFlightDialog from dgp.core.models.project import AirborneProject -from dgp.gui.dialog.create_project_dialog import CreateProjectDialog +from dgp.core.types.enumerations import DataTypes +from dgp.gui.dialogs.add_gravimeter_dialog import AddGravimeterDialog +from dgp.gui.dialogs.add_flight_dialog import AddFlightDialog +from dgp.gui.dialogs.data_import_dialog import DataImportDialog +from dgp.gui.dialogs.create_project_dialog import CreateProjectDialog +from .context import APP @pytest.fixture @@ -29,15 +33,32 @@ def airborne_prj(tmpdir): class TestDialogs: def test_create_project_dialog(self, tmpdir): dlg = CreateProjectDialog() + accept_spy = QtTest.QSignalSpy(dlg.accepted) _name = "Test Project" _notes = "Notes on the Test Project" _path = Path(tmpdir) + # Test field validation + assert str(Path().home().joinpath('Desktop')) == dlg.prj_dir.text() + _invld_style = 'color: red' + assert dlg.accept() is None + assert _invld_style == dlg.label_name.styleSheet() + dlg.prj_name.setText("TestProject") + dlg.prj_dir.setText("") + dlg.accept() + assert 0 == len(dlg.prj_dir.text()) + assert _invld_style == dlg.label_dir.styleSheet() + assert 0 == len(accept_spy) + + # Validate project directory exists + dlg.prj_dir.setText(str(Path().joinpath("fake"))) + dlg.accept() + assert 0 == len(accept_spy) + + dlg.prj_name.setText("") QTest.keyClicks(dlg.prj_name, _name) assert _name == dlg.prj_name.text() - assert str(Path().home().joinpath('Desktop')) == dlg.prj_dir.text() - dlg.prj_dir.setText('') QTest.keyClicks(dlg.prj_dir, str(_path)) assert str(_path) == dlg.prj_dir.text() @@ -46,6 +67,7 @@ def test_create_project_dialog(self, tmpdir): assert _notes == dlg.qpte_notes.toPlainText() QTest.mouseClick(dlg.btn_create, Qt.LeftButton) + assert 1 == len(accept_spy) assert isinstance(dlg.project, AirborneProject) assert _path.joinpath("TestProject") == dlg.project.path @@ -104,7 +126,129 @@ def test_edit_flight_dialog(self, airborne_prj): # dlg.accept() assert "Flt-2" == flt.name + def test_import_data_dialog(self, airborne_prj, tmpdir): + _path = Path(tmpdir).joinpath('source') + _path.mkdir() + project, project_ctrl = airborne_prj # type: AirborneProject, AirborneProjectController + _f1_date = datetime(2018, 3, 15) + flt1 = Flight("Flight1", _f1_date) + flt2 = Flight("Flight2") + fc1 = project_ctrl.add_child(flt1) # type: FlightController + fc2 = project_ctrl.add_child(flt2) + + dlg = DataImportDialog(project_ctrl, datatype=DataTypes.GRAVITY) + load_spy = QtTest.QSignalSpy(dlg.load) + + # test set_initial_flight + dlg.set_initial_flight(fc1) + assert flt1.name == dlg.qcb_flight.currentText() + + fc_clone = dlg._flight_model.item(dlg.qcb_flight.currentIndex()) + assert isinstance(fc_clone, FlightController) + assert fc1 != fc_clone + assert fc1 == dlg.flight + + assert dlg.file_path is None + _srcpath = _path.joinpath('testfile.dat') + QTest.keyClicks(dlg.qle_filepath, str(_srcpath)) + assert _srcpath == dlg.file_path + + dlg.qchb_grav_interp.setChecked(True) + assert dlg.qchb_grav_interp.isChecked() + _grav_map = dlg._params_map[DataTypes.GRAVITY] + assert _grav_map['columns']() is None + assert _grav_map['interp']() + assert not _grav_map['skiprows']() + + _traj_map = dlg._params_map[DataTypes.TRAJECTORY] + _time_col_map = { + 'hms': ['mdy', 'hms', 'lat', 'long', 'ell_ht'], + 'sow': ['week', 'sow', 'lat', 'long', 'ell_ht'], + 'serial': ['datenum', 'lat', 'long', 'ell_ht'] + } + for i, expected in enumerate(['hms', 'sow', 'serial']): + dlg.qcb_traj_timeformat.setCurrentIndex(i) + assert expected == _traj_map['timeformat']() + assert _time_col_map[expected] == _traj_map['columns']() + + assert not dlg.qchb_traj_hasheader.isChecked() + assert 0 == _traj_map['skiprows']() + dlg.qchb_traj_hasheader.setChecked(True) + assert 1 == _traj_map['skiprows']() + assert dlg.qchb_traj_isutc.isChecked() + assert _traj_map['is_utc']() + dlg.qchb_traj_isutc.setChecked(False) + assert not _traj_map['is_utc']() + + # Test emission of DataFile on _load_file + assert dlg.datatype == DataTypes.GRAVITY + assert 0 == len(flt1.data_files) + dlg._load_file() + assert 1 == len(load_spy) + assert 1 == len(flt1.data_files) + assert _srcpath == flt1.data_files[0].source_path + + load_args = load_spy[0] + assert isinstance(load_args, list) + file = load_args[0] + params = load_args[1] + assert isinstance(file, DataFile) + assert isinstance(params, dict) + + # Test date setting from flight + assert datetime.today() == dlg.qde_date.date() + dlg._set_date() + assert _f1_date == dlg.qde_date.date() + + # Create the test DataFile to permit accept() + _srcpath.touch() + dlg.qchb_copy_file.setChecked(True) + QTest.mouseClick(dlg.qdbb_buttons.button(QDialogButtonBox.Ok), Qt.LeftButton) + # dlg.accept() + assert 2 == len(load_spy) + assert project_ctrl.path.joinpath('testfile.dat').exists() + def test_add_gravimeter_dialog(self, airborne_prj): - project, project_ctrl = airborne_prj + project, project_ctrl = airborne_prj # type: AirborneProject, AirborneProjectController + _basepath = project_ctrl.path.joinpath('source').resolve() + _basepath.mkdir() + dlg = AddGravimeterDialog(project_ctrl) + assert dlg.config_path is None + + _ini_path = Path('tests/at1m.ini').resolve() + QTest.keyClicks(dlg.qle_config_path, str(_ini_path)) + assert _ini_path == dlg.config_path + + # Test exclusion of invalid file extensions + _bad_ini = _basepath.joinpath("meter.bad").resolve() + _bad_ini.touch() + dlg.qle_config_path.setText(str(_bad_ini)) + assert dlg.config_path is None + assert dlg._preview_config() is None + + _name = "AT1A-11" + assert "AT1A" == dlg.get_sensor_type() + QTest.keyClicks(dlg.qle_serial, str(11)) + assert _name == dlg.qle_name.text() + + assert 0 == len(project.gravimeters) + dlg.qle_config_path.setText(str(_ini_path.resolve())) + dlg.accept() + assert 1 == len(project.gravimeters) + assert _name == project.gravimeters[0].name + + dlg2 = AddGravimeterDialog(project_ctrl) + dlg2.qle_serial.setText(str(12)) + dlg2.accept() + assert 2 == len(project.gravimeters) + assert "AT1A-12" == project.gravimeters[1].name + + + + + + + + From 3d80bdd7f60a86ca9347dd12e5b08f0721abb342 Mon Sep 17 00:00:00 2001 From: Zachery Brady Date: Tue, 3 Jul 2018 16:48:55 -0600 Subject: [PATCH 129/236] Add basic tests for ProjectTreeModel. Renamed and moved Tree Model to controllers package --- dgp/core/controllers/project_treemodel.py | 68 +++++++++++++++++++++++ dgp/core/models/ProjectTreeModel.py | 40 ------------- dgp/gui/main.py | 2 +- tests/test_project_treemodel.py | 28 ++++++++++ 4 files changed, 97 insertions(+), 41 deletions(-) create mode 100644 dgp/core/controllers/project_treemodel.py delete mode 100644 dgp/core/models/ProjectTreeModel.py create mode 100644 tests/test_project_treemodel.py diff --git a/dgp/core/controllers/project_treemodel.py b/dgp/core/controllers/project_treemodel.py new file mode 100644 index 0000000..ef52a03 --- /dev/null +++ b/dgp/core/controllers/project_treemodel.py @@ -0,0 +1,68 @@ +# -*- coding: utf-8 -*- +from typing import Optional + +from PyQt5.QtCore import QObject, QModelIndex, pyqtSignal, pyqtSlot, QSortFilterProxyModel, Qt +from PyQt5.QtGui import QStandardItemModel + +from dgp.core.controllers.controller_interfaces import IFlightController, IAirborneController +from dgp.core.controllers.project_controllers import AirborneProjectController + +__all__ = ['ProjectTreeModel'] + + +class ProjectTreeModel(QStandardItemModel): + """Extension of QStandardItemModel which handles Project/Model specific + events and defines signals for domain specific actions. + + All signals/events should be connected via the model vs the View itself. + """ + flight_changed = pyqtSignal(IFlightController) + # Fired on any project mutation - can be used to autosave + project_changed = pyqtSignal() + + def __init__(self, project: AirborneProjectController, parent: Optional[QObject]=None): + super().__init__(parent) + self.appendRow(project) + + @pyqtSlot(QModelIndex, name='on_click') + def on_click(self, index: QModelIndex): # pragma: no cover + pass + + @pyqtSlot(QModelIndex, name='on_double_click') + def on_double_click(self, index: QModelIndex): + item = self.itemFromIndex(index) + if isinstance(item, IFlightController): + item.get_parent().set_active_child(item) + + +# Experiment +class ProjectTreeProxyModel(QSortFilterProxyModel): # pragma: no cover + """Experiment to filter tree model to a subset - not working currently, may require + more detailed custom implementation of QAbstractProxyModel + """ + def __init__(self, parent=None): + super().__init__(parent) + self._filter_type = None + self.setRecursiveFilteringEnabled(True) + + def setFilterType(self, obj: type): + self._filter_type = obj + + def sourceModel(self) -> QStandardItemModel: + return super().sourceModel() + + def filterAcceptsRow(self, source_row: int, source_parent: QModelIndex): + index: QModelIndex = self.sourceModel().index(source_row, 0, source_parent) + item = self.sourceModel().itemFromIndex(index) + print(item) + data = self.sourceModel().data(index, self.filterRole()) + disp = self.sourceModel().data(index, Qt.DisplayRole) + + res = isinstance(data, self._filter_type) + print("Result is: %s for row %d" % (str(res), source_row)) + print("Row display value: " + str(disp)) + + return res + + + diff --git a/dgp/core/models/ProjectTreeModel.py b/dgp/core/models/ProjectTreeModel.py deleted file mode 100644 index fcee49c..0000000 --- a/dgp/core/models/ProjectTreeModel.py +++ /dev/null @@ -1,40 +0,0 @@ -# -*- coding: utf-8 -*- -from typing import Optional - -from PyQt5.QtCore import QObject, QModelIndex, pyqtSignal, pyqtSlot, QSortFilterProxyModel, Qt -from PyQt5.QtGui import QStandardItemModel - -from dgp.core.controllers.flight_controller import FlightController -from dgp.core.controllers.project_controllers import AirborneProjectController - -__all__ = ['ProjectTreeModel'] - - -class ProjectTreeModel(QStandardItemModel): - """Extension of QStandardItemModel which handles Project/Model specific - events and defines signals for domain specific actions. - - All signals/events should be connected via the model vs the View itself. - """ - flight_changed = pyqtSignal(FlightController) - # Fired on any project mutation - can be used to autosave - project_changed = pyqtSignal() - - def __init__(self, root: AirborneProjectController, parent: Optional[QObject]=None): - super().__init__(parent) - self._root = root - self.appendRow(self._root) - - @property - def root_controller(self) -> AirborneProjectController: - return self._root - - @pyqtSlot(QModelIndex, name='on_click') - def on_click(self, index: QModelIndex): - pass - - @pyqtSlot(QModelIndex, name='on_double_click') - def on_double_click(self, index: QModelIndex): - item = self.itemFromIndex(index) - if isinstance(item, FlightController): - self.root_controller.set_active_child(item) diff --git a/dgp/gui/main.py b/dgp/gui/main.py index 9c46da1..032fbdc 100644 --- a/dgp/gui/main.py +++ b/dgp/gui/main.py @@ -14,7 +14,7 @@ import dgp.core.types.enumerations as enums from dgp.core.controllers.project_controllers import AirborneProjectController from dgp.core.controllers.flight_controller import FlightController -from dgp.core.models.ProjectTreeModel import ProjectTreeModel +from core.controllers.project_treemodel import ProjectTreeModel from dgp.core.models.project import AirborneProject from dgp.gui.utils import (ConsoleHandler, LOG_FORMAT, LOG_LEVEL_MAP, LOG_COLOR_MAP, get_project_file) diff --git a/tests/test_project_treemodel.py b/tests/test_project_treemodel.py new file mode 100644 index 0000000..14a80fc --- /dev/null +++ b/tests/test_project_treemodel.py @@ -0,0 +1,28 @@ +# -*- coding: utf-8 -*- +from pathlib import Path + +from dgp.core.models.flight import Flight +from dgp.core.controllers.project_controllers import AirborneProjectController +from dgp.core.models.project import AirborneProject +from dgp.core.controllers.project_treemodel import ProjectTreeModel + +from .context import APP + + +def test_project_treemodel(tmpdir): + project = AirborneProject(name="TestProjectTreeModel", path=Path(tmpdir)) + project_ctrl = AirborneProjectController(project) + + flt1 = Flight("Flt1") + fc1 = project_ctrl.add_child(flt1) + + model = ProjectTreeModel(project_ctrl) + + fc1_index = model.index(fc1.row(), 0, parent=model.index(project_ctrl.flights.row(), 0, parent=model.index( + project_ctrl.row(), 0))) + assert not fc1.is_active() + model.on_double_click(fc1_index) + assert fc1.is_active() + + prj_index = model.index(project_ctrl.row(), 0) + assert model.on_double_click(prj_index) is None From db285fed0e3e9602edcd269fa56948b9c58e5200 Mon Sep 17 00:00:00 2001 From: Zachery Brady Date: Thu, 5 Jul 2018 08:58:33 -0600 Subject: [PATCH 130/236] Added Documentation Structure for dgp.core Added documentation .rst for Sphinx documentation build. Still need to add docstrings to many core classes/methods. Added default :members: directive to autodoc configuration (docs/source/conf.py) --- README.rst | 8 +- docs/README.rst | 4 + docs/source/conf.py | 42 +++++--- docs/source/core/controllers.rst | 107 +++++++++++++++++++++ docs/source/core/index.rst | 36 +++++++ docs/source/core/models.rst | 74 ++++++++++++++ docs/source/core/types.rst | 6 ++ docs/source/dgp.rst | 17 ---- docs/source/gui/index.rst | 26 +++++ docs/source/index.rst | 24 +++-- docs/source/install.rst | 5 + docs/source/{dgp.lib.rst => lib/index.rst} | 17 +--- docs/source/modules.rst | 7 -- docs/source/userguide.rst | 5 + 14 files changed, 315 insertions(+), 63 deletions(-) create mode 100644 docs/README.rst create mode 100644 docs/source/core/controllers.rst create mode 100644 docs/source/core/index.rst create mode 100644 docs/source/core/models.rst create mode 100644 docs/source/core/types.rst delete mode 100644 docs/source/dgp.rst create mode 100644 docs/source/gui/index.rst create mode 100644 docs/source/install.rst rename docs/source/{dgp.lib.rst => lib/index.rst} (73%) delete mode 100644 docs/source/modules.rst create mode 100644 docs/source/userguide.rst diff --git a/README.rst b/README.rst index 23c728d..d8d212b 100644 --- a/README.rst +++ b/README.rst @@ -3,11 +3,15 @@ DGP (Dynamic Gravity Processor) .. image:: https://travis-ci.org/DynamicGravitySystems/DGP.svg?branch=master :target: https://travis-ci.org/DynamicGravitySystems/DGP +.. image:: https://ci.appveyor.com/api/projects/status/np3s77n1s8hpvn5u?svg=true + :target: https://ci.appveyor.com/project/bradyzp/dgp + .. image:: https://coveralls.io/repos/github/DynamicGravitySystems/DGP/badge.svg?branch=feature%2Fproject-structure :target: https://coveralls.io/github/DynamicGravitySystems/DGP?branch=feature%2Fproject-structure -.. image:: https://ci.appveyor.com/api/projects/status/np3s77n1s8hpvn5u?svg=true - :target: https://ci.appveyor.com/project/bradyzp/dgp +.. image:: https://readthedocs.org/projects/dgp/badge/?version=develop + :target: https://dgp.readthedocs.io/en/develop + :alt: Documentation Status What is it ---------- diff --git a/docs/README.rst b/docs/README.rst new file mode 100644 index 0000000..d43dcce --- /dev/null +++ b/docs/README.rst @@ -0,0 +1,4 @@ +DGP Documentation README +~~~~~~~~~~~~~~~~~~~~~~~~ + + diff --git a/docs/source/conf.py b/docs/source/conf.py index 13af83d..496c3de 100644 --- a/docs/source/conf.py +++ b/docs/source/conf.py @@ -19,10 +19,10 @@ # import os import sys + sys.path.insert(0, os.path.abspath('.')) sys.path.insert(0, os.path.abspath('../..')) - # -- General configuration ------------------------------------------------ # If your documentation needs a minimal Sphinx version, state it here. @@ -33,16 +33,19 @@ # extensions coming with Sphinx (named 'sphinx.ext.*') or your custom # ones. extensions = ['sphinx.ext.autodoc', - 'sphinx.ext.doctest', - 'sphinx.ext.todo', - 'sphinx.ext.mathjax', - 'sphinx.ext.viewcode', - 'sphinx.ext.napoleon'] + 'sphinx.ext.doctest', + 'sphinx.ext.todo', + 'sphinx.ext.mathjax', + 'sphinx.ext.viewcode', + 'sphinx.ext.napoleon'] napoleon_google_docstring = False napoleon_use_param = False napoleon_use_ivar = True +# Set whether module paths are prepended to class objects in doc. +add_module_names = False + # Add any paths that contain templates here, relative to this directory. templates_path = ['_templates'] @@ -57,8 +60,8 @@ # General information about the project. project = 'Dynamic Gravity Processor' -copyright = '2017, Zachery Brady, Daniel Aliod, Nigel Brady, Chris Bertinato' -author = 'Zachery Brady, Daniel Aliod, Nigel Brady, Chris Bertinato' +author = 'Zachery Brady, Daniel Aliod, Chris Bertinato' +copyright = '2017, 2018, ' + author # The version info for the project you're documenting, acts as replacement for # |version| and |release|, also used in various other places throughout the @@ -87,7 +90,6 @@ # If true, `todo` and `todoList` produce output, else they produce nothing. todo_include_todos = True - # -- Options for HTML output ---------------------------------------------- # The theme to use for HTML and HTML Help pages. See the documentation for @@ -99,7 +101,9 @@ # further. For a list of options available for each theme, see the # documentation. # -# html_theme_options = {} +html_theme_options = { + 'navigation_depth': 4 +} # Add any paths that contain custom static files (such as style sheets) here, # relative to this directory. They are copied after the builtin static files, @@ -121,13 +125,15 @@ ] } +html_logo = "" + +html_show_sourcelink = True # -- Options for HTMLHelp output ------------------------------------------ # Output file base name for HTML help builder. htmlhelp_basename = 'DynamicGravityProcessordoc' - # -- Options for LaTeX output --------------------------------------------- latex_elements = { @@ -153,10 +159,9 @@ # author, documentclass [howto, manual, or own class]). latex_documents = [ (master_doc, 'DynamicGravityProcessor.tex', 'Dynamic Gravity Processor Documentation', - 'Zachery Brady, Daniel Aliod, Nigel Brady, Chris Bertinato', 'manual'), + 'Daniel Aliod, Chris Bertinato, Zachery Brady', 'manual'), ] - # -- Options for manual page output --------------------------------------- # One entry per manual page. List of tuples @@ -166,7 +171,6 @@ [author], 1) ] - # -- Options for Texinfo output ------------------------------------------- # Grouping the document tree into Texinfo files. List of tuples @@ -177,3 +181,13 @@ author, 'DynamicGravityProcessor', 'One line description of project.', 'Miscellaneous'), ] + +# -- Options for Autodoc plugin ------------------------------------------- + +# Set sort type for auto documented members, select from 'alphabetical', 'groupwise', +# or 'bysource' +autodoc_member_order = 'bysource' + +# Autodoc directives automatically applied +autodoc_default_flags = ['members'] + diff --git a/docs/source/core/controllers.rst b/docs/source/core/controllers.rst new file mode 100644 index 0000000..c824f1a --- /dev/null +++ b/docs/source/core/controllers.rst @@ -0,0 +1,107 @@ +dgp.core.controllers package +============================ + +The Controllers package contains the various controller classes which are +layered on top of the core 'data models' (see the :doc:`models`) which +themselves store the raw project data. + +The function of the controller classes is to provide an interaction +layer on top of the data layer - without complicating the underlying +data classes, especially as the data classes must undergo serialization +and de-serialization. + +The controllers provide various functionality related to creating, +traversing, and mutating the project tree-hierarchy. The controllers +also interact in minor ways with the UI, and more importantly, are the +layer by which the UI interacts with the underlying project data. + + +TODO: Add Controller Hierarchy like in models.rst + + +Interfaces +---------- + +The following interfaces provide interface definitions for the various +controllers used within the overall project model. + +The interfaces, while perhaps not exactly Pythonic, provide great utility +in terms of type safety in the interaction of the various controllers. +In most cases the concrete subclasses of these interfaces cannot be +directly imported into other controllers as this would cause circular +import loops + +.. py:module:: dgp.core.controllers + +e.g. the :class:`~.flight_controller.FlightController` +is a child of an :class:`~.project_controllers.AirborneProjectController`, +but the FlightController also stores a typed reference to its parent +(creating a circular reference), the interfaces are designed to allow proper +type hinting within the development environment in such cases. + + +.. py:module:: dgp.core.controllers.controller_interfaces + +.. autoclass:: IBaseController + :show-inheritance: + :undoc-members: + +.. autoclass:: IAirborneController + :show-inheritance: + :undoc-members: + +.. autoclass:: IFlightController + :show-inheritance: + :undoc-members: + +.. autoclass:: IMeterController + :show-inheritance: + :undoc-members: + +.. autoclass:: IParent + :undoc-members: + +.. autoclass:: IChild + :undoc-members: + + +Controllers +----------- + +.. py:module:: dgp.core.controllers.project_controllers +.. autoclass:: AirborneProjectController + :undoc-members: + :show-inheritance: + +.. py:module:: dgp.core.controllers.flight_controller +.. autoclass:: FlightController + :undoc-members: + :show-inheritance: + +.. py:module:: dgp.core.controllers.gravimeter_controller +.. autoclass:: GravimeterController + :undoc-members: + :show-inheritance: + +.. py:module:: dgp.core.controllers.datafile_controller +.. autoclass:: DataFileController + :undoc-members: + :show-inheritance: + +.. py:module:: dgp.core.controllers.flightline_controller +.. autoclass:: FlightLineController + :undoc-members: + :show-inheritance: + + +Utility/Helper Modules +---------------------- + +.. autoclass:: dgp.core.controllers.controller_mixins.AttributeProxy + :undoc-members: + +.. automodule:: dgp.core.controllers.controller_helpers + :undoc-members: + + + diff --git a/docs/source/core/index.rst b/docs/source/core/index.rst new file mode 100644 index 0000000..daa1917 --- /dev/null +++ b/docs/source/core/index.rst @@ -0,0 +1,36 @@ +***************** +dgp\.core package +***************** + +Core modules and packages defining the project data-layer +and controllers for interfacing with the data-layer via the +user interface. + + +.. toctree:: + :caption: Sub Packages + :maxdepth: 1 + + models.rst + controllers.rst + types.rst + + +Sub Modules +=========== + +dgp.core.file_loader module +--------------------------- + +.. automodule:: dgp.core.file_loader + :members: + :undoc-members: + + +dgp.core.oid module +------------------- + +.. automodule:: dgp.core.oid + :members: + :undoc-members: + diff --git a/docs/source/core/models.rst b/docs/source/core/models.rst new file mode 100644 index 0000000..3acb5fd --- /dev/null +++ b/docs/source/core/models.rst @@ -0,0 +1,74 @@ +dgp.core.models package +======================= + +The dgp.core.models package contains and defines the various +data classes that define the logical structure of a 'Gravity Project' + +Currently we are focused exclusively on providing functionality for +representing and processing an Airborne Gravity Survey/Campaign. + +The following generally describes the class hierarchy of a typical Airborne project: + +.. py:module:: dgp.core.models + + +| :obj:`~.project.AirborneProject` +| ├── :obj:`~.flight.Flight` +| │ ├── :obj:`~.flight.FlightLine` +| │ ├── :obj:`~.data.DataFile` -- Gravity +| │ └── :obj:`~.data.DataFile` -- Trajectory +| │ └── :obj:`~.meter.Gravimeter` +| └── :obj:`~.meter.Gravimeter` + +----------------------------------------- + +The project can have multiple :obj:`~.flight.Flight`, and each Flight can have 0 or more +:obj:`~.flight.FlightLine`, :obj:`~.data.DataFile`, and linked :obj:`~.meter.Gravimeter`. +The project can also define multiple Gravimeters, of varying type with specific +configuration files assigned to each. + + +.. contents:: + :depth: 2 + + +dgp.core.models.project module +------------------------------ + +.. autoclass:: dgp.core.models.project.GravityProject + :undoc-members: + +.. autoclass:: dgp.core.models.project.AirborneProject + :undoc-members: + :show-inheritance: + +Project Serialization/De-Serialization Classes +^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ + +.. autoclass:: dgp.core.models.project.ProjectEncoder + :show-inheritance: + +.. autoclass:: dgp.core.models.project.ProjectDecoder + :show-inheritance: + + +dgp.core.models.meter module +---------------------------- + +.. versionadded:: 0.1.0 +.. automodule:: dgp.core.models.meter + :undoc-members: + +dgp.core.models.flight module +----------------------------- + +.. automodule:: dgp.core.models.flight + :undoc-members: + +dgp.core.models.data module +------------------------------ + +.. automodule:: dgp.core.models.data + :members: + :undoc-members: + diff --git a/docs/source/core/types.rst b/docs/source/core/types.rst new file mode 100644 index 0000000..e638f72 --- /dev/null +++ b/docs/source/core/types.rst @@ -0,0 +1,6 @@ +dgp.core.types package +====================== + + +Stuff about types + diff --git a/docs/source/dgp.rst b/docs/source/dgp.rst deleted file mode 100644 index 8d7af74..0000000 --- a/docs/source/dgp.rst +++ /dev/null @@ -1,17 +0,0 @@ -dgp package -=========== - -Subpackages ------------ - -.. toctree:: - - dgp.lib - -Module contents ---------------- - -.. automodule:: dgp - :members: - :undoc-members: - :show-inheritance: diff --git a/docs/source/gui/index.rst b/docs/source/gui/index.rst new file mode 100644 index 0000000..7f6c376 --- /dev/null +++ b/docs/source/gui/index.rst @@ -0,0 +1,26 @@ +dgp.gui package +=============== + +This package contains modules and sub-packages related to the +Graphical User Interface (GUI) presentation layer of DGP. + +DGP's User Interface is built on the Qt 5 C++ library, using the +PyQt Python bindings. + +Custom Qt Views, Widgets, and Dialogs are contained here, as well +as plotting interfaces. + +Qt Interfaces and Widgets created with Qt Creator generate .ui XML +files, which are then compiled into a Python source files which define +individual UI components. +The .ui source files are contained within the ui directory. + +.. seealso:: + + `Qt 5 Documentation `__ + + `PyQt5 Documentation `__ + + +.. toctree:: + :caption: Sub Packages diff --git a/docs/source/index.rst b/docs/source/index.rst index 85d797c..d6a1a19 100644 --- a/docs/source/index.rst +++ b/docs/source/index.rst @@ -1,19 +1,23 @@ -.. Dynamic Gravity Processor documentation master file, created by - sphinx-quickstart on Mon Aug 14 09:16:37 2017. - You can adapt this file completely to your liking, but it should at least - contain the root `toctree` directive. - Welcome to Dynamic Gravity Processor's documentation! ===================================================== .. toctree:: - :maxdepth: 2 - :caption: Contents: + :caption: Getting Started + + install.rst + userguide.rst + +.. toctree:: + :caption: API Documentation + + core/index.rst + lib/index.rst + gui/index.rst - modules - dgp.lib - contributing +.. toctree:: + :caption: Development + contributing.rst Indices and tables diff --git a/docs/source/install.rst b/docs/source/install.rst new file mode 100644 index 0000000..a8a5472 --- /dev/null +++ b/docs/source/install.rst @@ -0,0 +1,5 @@ +============ +Installation +============ + +TODO: All diff --git a/docs/source/dgp.lib.rst b/docs/source/lib/index.rst similarity index 73% rename from docs/source/dgp.lib.rst rename to docs/source/lib/index.rst index 2041492..05eda87 100644 --- a/docs/source/dgp.lib.rst +++ b/docs/source/lib/index.rst @@ -1,14 +1,15 @@ dgp\.lib package ================ -Submodules ----------- + +This package contains library functions and utilities for loading, +processing, and transforming gravity and trajectory data. + dgp\.lib\.gravity\_ingestor module ---------------------------------- .. automodule:: dgp.lib.gravity_ingestor - :members: :undoc-members: :show-inheritance: @@ -16,7 +17,6 @@ dgp\.lib\.time\_utils module ---------------------------- .. automodule:: dgp.lib.time_utils - :members: :undoc-members: :show-inheritance: @@ -24,15 +24,6 @@ dgp\.lib\.trajectory\_ingestor module ------------------------------------- .. automodule:: dgp.lib.trajectory_ingestor - :members: :undoc-members: :show-inheritance: - -Module contents ---------------- - -.. automodule:: dgp.lib - :members: - :undoc-members: - :show-inheritance: diff --git a/docs/source/modules.rst b/docs/source/modules.rst deleted file mode 100644 index 7ea1b01..0000000 --- a/docs/source/modules.rst +++ /dev/null @@ -1,7 +0,0 @@ -dgp -=== - -.. toctree:: - :maxdepth: 4 - - dgp diff --git a/docs/source/userguide.rst b/docs/source/userguide.rst new file mode 100644 index 0000000..93d2825 --- /dev/null +++ b/docs/source/userguide.rst @@ -0,0 +1,5 @@ +User Guide +========== + +TODO: Write documentation/tutorial on how to use the application, +targeted at actual users, not developers. From ca4888ce05f2f2338b97524a62cf7ca946dc693e Mon Sep 17 00:00:00 2001 From: Zachery Brady Date: Thu, 5 Jul 2018 09:06:56 -0600 Subject: [PATCH 131/236] Update CI Configs. Split requirements.txt files. Split requirements txt files into build/test/documentation requires. Removed pinned sub-dependencies for the moment, pinning only the core dependencies (numpy, scipy, pandas etc.) Updated scipy to 1.1.0 Update sphinx to 1.7.5 and the sphinx_rtd_theme to 0.4.0 --- .appveyor.yml | 2 +- .travis.yml | 5 +---- docs/requirements.txt | 37 ++++++++----------------------------- requirements.txt | 28 ++++------------------------ test-requirements.txt | 4 ++++ 5 files changed, 18 insertions(+), 58 deletions(-) create mode 100644 test-requirements.txt diff --git a/.appveyor.yml b/.appveyor.yml index 319bb54..eef68c2 100644 --- a/.appveyor.yml +++ b/.appveyor.yml @@ -13,7 +13,7 @@ install: - "python -m pip install -U pip setuptools" - "python -m pip install Cython==0.28.3" - "python -m pip install -r requirements.txt" - - "python -m pip install pytest-cov coveralls" + - "python -m pip install -r test-requirements.txt" before_test: - "python utils/build_uic.py dgp/gui/ui" diff --git a/.travis.yml b/.travis.yml index dc58127..feb56c9 100644 --- a/.travis.yml +++ b/.travis.yml @@ -1,7 +1,6 @@ language: python cache: pip python: - - "3.5" - "3.6" before_install: - sudo apt-get install -y libgeos-dev @@ -9,9 +8,7 @@ before_install: install: - pip install Cython==0.28.3 - pip install -r requirements.txt - - pip install coverage - - pip install pytest-cov - - pip install coveralls + - pip install -r test-requirements.txt before_script: - "export DISPLAY=:99.0" - "sh -e /etc/init.d/xvfb start" diff --git a/docs/requirements.txt b/docs/requirements.txt index 7002124..f1e73c6 100644 --- a/docs/requirements.txt +++ b/docs/requirements.txt @@ -1,33 +1,12 @@ -alabaster==0.7.10 -Babel==2.5.0 -certifi==2017.7.27.1 -chardet==3.0.4 -cycler==0.10.0 -docutils==0.14 -idna==2.6 -imagesize==0.7.1 -Jinja2==2.9.6 -MarkupSafe==1.0 -numexpr==2.6.2 -Pygments==2.2.0 -pyparsing==2.2.0 -python-dateutil==2.6.1 -pytz==2017.2 -requests==2.18.4 -snowballstemmer==1.2.1 -Sphinx==1.6.3 -sphinx-rtd-theme==0.2.4 -sphinxcontrib-websupport==1.0.1 -urllib3==1.22 +# Documentation Requirements +Sphinx==1.7.5 +sphinx_rtd_theme==0.4.0 -coverage==4.4.1 -matplotlib==2.0.2 -numpy==1.13.1 +# Project Requirements +matplotlib>=2.0.2 +numpy>=1.13.1 pandas==0.20.3 -PyQt5==5.9 +PyQt5==5.11.2 pyqtgraph==0.10.0 -requests==2.18.4 -scipy==0.19.1 -sip==4.19.3 -six==1.10.0 tables==3.4.2 +scipy==1.1.0 diff --git a/requirements.txt b/requirements.txt index ed49f55..db106f3 100644 --- a/requirements.txt +++ b/requirements.txt @@ -1,28 +1,8 @@ -alabaster==0.7.10 -atomicwrites==1.1.5 -attrs==18.1.0 -certifi==2017.7.27.1 -chardet==3.0.4 -coverage==4.4.1 -cycler==0.10.0 -idna==2.6 -matplotlib==2.0.2 -more-itertools==4.2.0 -nose==1.3.7 -numexpr==2.6.5 -numpy==1.13.1 +# Project Requirements +matplotlib>=2.0.2 +numpy>=1.13.1 pandas==0.20.3 -pluggy==0.6.0 -py==1.5.3 -pyparsing==2.2.0 PyQt5==5.11.2 pyqtgraph==0.10.0 -pytest==3.6.1 -python-dateutil==2.7.3 -pytz==2018.4 -requests==2.18.4 -scipy==1.1.0 -sip==4.19.3 -six==1.10.0 tables==3.4.2 -urllib3==1.22 +scipy==1.1.0 diff --git a/test-requirements.txt b/test-requirements.txt new file mode 100644 index 0000000..fdce606 --- /dev/null +++ b/test-requirements.txt @@ -0,0 +1,4 @@ +pytest>=3.6.1 +coverage>=4.4.1 +pytest-cov>=2.5.1 +coveralls From 5ccdcac9fccf085a1b16767fb6787160bc45e453 Mon Sep 17 00:00:00 2001 From: Zachery Brady Date: Thu, 5 Jul 2018 16:49:26 -0600 Subject: [PATCH 132/236] Add Dialog Validation Mixin Class Add validation mixin which runs validation checks on a QFormLayout's widgets for valid input. Added tests for dialogs, updated .ui dialog forms. --- dgp/gui/dialogs/add_flight_dialog.py | 25 +++- dgp/gui/dialogs/add_gravimeter_dialog.py | 19 ++- dgp/gui/dialogs/create_project_dialog.py | 52 +++---- dgp/gui/dialogs/custom_validators.py | 52 +++++++ dgp/gui/dialogs/data_import_dialog.py | 31 ++-- dgp/gui/dialogs/dialog_mixins.py | 99 +++++++++++++ dgp/gui/ui/add_flight_dialog.ui | 26 +++- dgp/gui/ui/add_meter_dialog.ui | 32 +++-- dgp/gui/ui/create_project_dialog.ui | 22 +-- dgp/gui/ui/data_import_dialog.ui | 48 ++++--- tests/test_dialogs.py | 171 ++++++++++++++++++++--- 11 files changed, 463 insertions(+), 114 deletions(-) create mode 100644 dgp/gui/dialogs/custom_validators.py create mode 100644 dgp/gui/dialogs/dialog_mixins.py diff --git a/dgp/gui/dialogs/add_flight_dialog.py b/dgp/gui/dialogs/add_flight_dialog.py index d1f77f0..e9d52ea 100644 --- a/dgp/gui/dialogs/add_flight_dialog.py +++ b/dgp/gui/dialogs/add_flight_dialog.py @@ -1,17 +1,19 @@ # -*- coding: utf-8 -*- import datetime -from typing import Optional +from typing import Optional, List -from PyQt5.QtCore import Qt, QDate -from PyQt5.QtWidgets import QDialog, QWidget +from PyQt5.QtCore import Qt, QDate, QRegExp +from PyQt5.QtGui import QRegExpValidator +from PyQt5.QtWidgets import QDialog, QWidget, QFormLayout from dgp.core.models.meter import Gravimeter from dgp.core.controllers.controller_interfaces import IAirborneController, IFlightController from dgp.core.models.flight import Flight +from .dialog_mixins import FormValidator from ..ui.add_flight_dialog import Ui_NewFlight -class AddFlightDialog(QDialog, Ui_NewFlight): +class AddFlightDialog(QDialog, Ui_NewFlight, FormValidator): def __init__(self, project: IAirborneController, flight: IFlightController = None, parent: Optional[QWidget] = None): super().__init__(parent) @@ -22,13 +24,28 @@ def __init__(self, project: IAirborneController, flight: IFlightController = Non self.cb_gravimeters.setModel(project.meter_model) self.qpb_add_sensor.clicked.connect(self._project.add_gravimeter) + # Configure Form Validation + self._name_validator = QRegExpValidator(QRegExp(".{4,20}")) + self.qle_flight_name.setValidator(self._name_validator) + if self._flight is not None: self._set_flight(self._flight) else: self.qde_flight_date.setDate(datetime.date.today()) self.qsb_sequence.setValue(project.flight_model.rowCount()) + @property + def validation_targets(self) -> List[QFormLayout]: + return [self.qfl_flight_form] + + @property + def validation_error(self): + return self.ql_validation_err + def accept(self): + if not self.validate(): + return + name = self.qle_flight_name.text() qdate: QDate = self.qde_flight_date.date() date = datetime.date(qdate.year(), qdate.month(), qdate.day()) diff --git a/dgp/gui/dialogs/add_gravimeter_dialog.py b/dgp/gui/dialogs/add_gravimeter_dialog.py index 1085a60..c8fdf4f 100644 --- a/dgp/gui/dialogs/add_gravimeter_dialog.py +++ b/dgp/gui/dialogs/add_gravimeter_dialog.py @@ -1,17 +1,19 @@ # -*- coding: utf-8 -*- from pathlib import Path from pprint import pprint -from typing import Optional +from typing import Optional, List from PyQt5.QtGui import QIntValidator, QIcon, QStandardItemModel, QStandardItem -from PyQt5.QtWidgets import QDialog, QWidget, QFileDialog, QListWidgetItem +from PyQt5.QtWidgets import QDialog, QWidget, QFileDialog, QListWidgetItem, QFormLayout from dgp.core.controllers.controller_interfaces import IAirborneController from dgp.core.models.meter import Gravimeter from dgp.gui.ui.add_meter_dialog import Ui_AddMeterDialog +from .dialog_mixins import FormValidator, VALIDATION_ERR_MSG -class AddGravimeterDialog(QDialog, Ui_AddMeterDialog): +class AddGravimeterDialog(QDialog, Ui_AddMeterDialog, FormValidator): + def __init__(self, project: IAirborneController, parent: Optional[QWidget] = None): super().__init__(parent) self.setupUi(self) @@ -39,6 +41,14 @@ def __init__(self, project: IAirborneController, parent: Optional[QWidget] = Non self.qtv_config_view.setModel(self._config_model) + @property + def validation_targets(self) -> List[QFormLayout]: + return [self.qfl_meter_form] + + @property + def validation_error(self): + return self.ql_validation_err + @property def config_path(self): if not len(self.qle_config_path.text()): @@ -53,6 +63,9 @@ def config_path(self): return _path def accept(self): + if not self.validate(): + return + if self.qle_config_path.text(): meter = Gravimeter.from_ini(Path(self.qle_config_path.text()), name=self.qle_name.text()) else: diff --git a/dgp/gui/dialogs/create_project_dialog.py b/dgp/gui/dialogs/create_project_dialog.py index 3554443..b35d85b 100644 --- a/dgp/gui/dialogs/create_project_dialog.py +++ b/dgp/gui/dialogs/create_project_dialog.py @@ -1,17 +1,20 @@ # -*- coding: utf-8 -*- import logging from pathlib import Path +from typing import List -from PyQt5.QtCore import Qt -from PyQt5.QtGui import QIcon -from PyQt5.QtWidgets import QDialog, QListWidgetItem, QLabel, QFileDialog +from PyQt5.QtCore import Qt, QRegExp +from PyQt5.QtGui import QIcon, QRegExpValidator +from PyQt5.QtWidgets import QDialog, QListWidgetItem, QFileDialog, QFormLayout from dgp.core.models.project import AirborneProject from dgp.core.types.enumerations import ProjectTypes from dgp.gui.ui.create_project_dialog import Ui_CreateProjectDialog +from .dialog_mixins import FormValidator +from .custom_validators import DirectoryValidator -class CreateProjectDialog(QDialog, Ui_CreateProjectDialog): +class CreateProjectDialog(QDialog, Ui_CreateProjectDialog, FormValidator): def __init__(self, parent=None): super().__init__(parent=parent) self.setupUi(self) @@ -33,10 +36,17 @@ def __init__(self, parent=None): self.prj_type_list) dgs_marine.setData(Qt.UserRole, ProjectTypes.MARINE) - # TODO: Replace this with method to show warning in dialog - def show_message(self, message, **kwargs): # pragma: no cover - """Shim to replace BaseDialog method""" - print(message) + # Configure Validation + self.prj_name.setValidator(QRegExpValidator(QRegExp("[A-Za-z]+.{3,30}"))) + self.prj_dir.setValidator(DirectoryValidator(exist_ok=True)) + + @property + def validation_targets(self) -> List[QFormLayout]: + return [self.qfl_create_form] + + @property + def validation_error(self): + return self.ql_validation_err def accept(self): """ @@ -44,28 +54,7 @@ def accept(self): then accept() if required fields are filled, otherwise color the labels red and display a warning message. """ - - invld_fields = [] - for attr, label in self.__dict__.items(): - if not isinstance(label, QLabel): - continue - text = str(label.text()) - if text.endswith('*'): - buddy = label.buddy() - if buddy and not buddy.text(): - label.setStyleSheet('color: red') - invld_fields.append(text) - elif buddy: - label.setStyleSheet('color: black') - - base_path = Path(self.prj_dir.text()) - if not base_path.exists(): - self.show_message("Invalid Directory - Does not Exist", - buddy_label='label_dir') - return - - if invld_fields: - self.show_message('Verify that all fields are filled.') + if not self.validate(): return # TODO: Future implementation for Project types other than DGS AT1A @@ -79,8 +68,7 @@ def accept(self): self._project = AirborneProject(name=name, path=path, description=self.qpte_notes.toPlainText()) else: # pragma: no cover - self.show_message("Invalid Project Type (Not yet implemented)", - log=logging.WARNING, color='red') + self.ql_validation_err.setText("Invalid Project Type - Not Implemented") return super().accept() diff --git a/dgp/gui/dialogs/custom_validators.py b/dgp/gui/dialogs/custom_validators.py new file mode 100644 index 0000000..162f3b2 --- /dev/null +++ b/dgp/gui/dialogs/custom_validators.py @@ -0,0 +1,52 @@ +# -*- coding: utf-8 -*- +from pathlib import Path +from typing import Tuple + +from PyQt5.QtGui import QValidator + + +class FileExistsValidator(QValidator): + # TODO: Move this into its own module (custom_validators?) + def __init__(self, parent=None): + super().__init__(parent=parent) + + def validate(self, value: str, pos: int): + """Note, the Python implementation of this differs from the C++ API + value and pos are passed as pointers in C++ allowing them to be mutated + within the validate function. + As this cannot be done in Python, the return type signature is changed instead + to incorporate value and pos as a tuple with the QValidator State + """ + try: + path = Path(value) + except TypeError: + return QValidator.Invalid, value, pos + + if path.is_file(): + # Checking .exists() is redundant + return QValidator.Acceptable, value, pos + return QValidator.Intermediate, value, pos + + +class DirectoryValidator(QValidator): + def __init__(self, exist_ok=True, parent=None): + super().__init__(parent=parent) + self._exist_ok = exist_ok + + def validate(self, value: str, pos: int) -> Tuple[int, str, int]: + """TODO: Think about the logic here, allow nonexistent path if parent exists? e.g. creating new dir""" + try: + path = Path(value) + except TypeError: + return QValidator.Invalid, value, pos + + if path.is_file(): + return QValidator.Invalid, value, pos + + if path.is_dir() and self._exist_ok: + return QValidator.Acceptable, str(path.absolute()), pos + + if path.is_dir() and not self._exist_ok: + return QValidator.Intermediate, value, pos + + return QValidator.Intermediate, value, pos diff --git a/dgp/gui/dialogs/data_import_dialog.py b/dgp/gui/dialogs/data_import_dialog.py index 5c155bd..07a7c6a 100644 --- a/dgp/gui/dialogs/data_import_dialog.py +++ b/dgp/gui/dialogs/data_import_dialog.py @@ -4,22 +4,25 @@ import shutil from datetime import datetime from pathlib import Path -from typing import Union, Optional +from typing import Union, Optional, List from PyQt5.QtCore import Qt, pyqtSlot, pyqtSignal, QDate from PyQt5.QtGui import QStandardItemModel, QStandardItem, QIcon -from PyQt5.QtWidgets import QDialog, QFileDialog, QListWidgetItem, QCalendarWidget, QWidget +from PyQt5.QtWidgets import QDialog, QFileDialog, QListWidgetItem, QCalendarWidget, QWidget, QFormLayout import dgp.core.controllers.gravimeter_controller as mtr from dgp.core.controllers.controller_interfaces import IAirborneController, IFlightController from dgp.core.models.data import DataFile from dgp.core.types.enumerations import DataTypes from dgp.gui.ui.data_import_dialog import Ui_DataImportDialog +from .dialog_mixins import FormValidator +from .custom_validators import FileExistsValidator __all__ = ['DataImportDialog'] -class DataImportDialog(QDialog, Ui_DataImportDialog): +class DataImportDialog(QDialog, Ui_DataImportDialog, FormValidator): + load = pyqtSignal(DataFile, dict) def __init__(self, project: IAirborneController, @@ -100,6 +103,9 @@ def __init__(self, project: IAirborneController, self.qsw_advanced_properties.setCurrentIndex(self._type_map[datatype]) + # Configure Validators + self.qle_filepath.setValidator(FileExistsValidator()) + def set_initial_flight(self, flight: IFlightController): for i in range(self._flight_model.rowCount()): # pragma: no branch child = self._flight_model.item(i, 0) @@ -107,6 +113,14 @@ def set_initial_flight(self, flight: IFlightController): self.qcb_flight.setCurrentIndex(i) break + @property + def validation_targets(self) -> List[QFormLayout]: + return [self.qfl_common] + + @property + def validation_error(self): + return self.ql_validation_err + @property def project(self) -> IAirborneController: return self._project @@ -136,17 +150,8 @@ def date(self) -> datetime: return datetime(_date.year(), _date.month(), _date.day()) def accept(self): # pragma: no cover - if self.file_path is None: - self.ql_path.setStyleSheet("color: red") - self.log.warning("Path cannot be empty.") - return - if not self.file_path.exists(): - self.ql_path.setStyleSheet("color: red") - self.log.warning("Path does not exist.") + if not self.validate(): return - if not self.file_path.is_file(): - self.ql_path.setStyleSheet("color: red") - self.log.warning("Path must be a file, not a directory.") if self._load_file(): if self.qchb_copy_file.isChecked(): diff --git a/dgp/gui/dialogs/dialog_mixins.py b/dgp/gui/dialogs/dialog_mixins.py new file mode 100644 index 0000000..fbb7f0d --- /dev/null +++ b/dgp/gui/dialogs/dialog_mixins.py @@ -0,0 +1,99 @@ +# -*- coding: utf-8 -*- +from typing import List + +from PyQt5.QtGui import QValidator, QRegExpValidator, QIntValidator, QDoubleValidator +from PyQt5.QtWidgets import (QFormLayout, QWidget, QLineEdit, QLabel, QHBoxLayout, QLayoutItem, + QVBoxLayout) + +__all__ = ['FormValidator', 'VALIDATION_ERR_MSG'] +VALIDATION_ERR_MSG = "Ensure all marked fields are completed." + + +class FormValidator: + """FormValidator Mixin Class + + This mixin provides a simple interface to run automatic validation + on one or more QFormLayout objects in a Qt Object (typically within + a QDialog). + + The mixin also supports validation of fields that are nested within a + layout, for example it is common to use a QHBoxLayout (horizontal layout) + within the FormLayout field area to have both a QLineEdit input and a + QPushButton next to it (to browse for a file for example). + The validate method will introspect any sub-layouts and retrieve the FIRST + widget that can be validated, which has a validator or input mask set. + + TODO: Create a subclass of QRegExpValidator that allows a human error + message to be set + TODO: Consider some way to hook into fields and validate on changes + That is a dynamic validation, so when the user corrects an invalid field + the state is updated + + + """ + ERR_STYLE = "QLabel { color: red; }" + _CAN_VALIDATE = (QLineEdit,) + + @property + def validation_targets(self) -> List[QFormLayout]: + """Override this property with the QFormLayout object to be validated""" + raise NotImplementedError + + @property + def validation_error(self) -> QLabel: + return QLabel() + + def _validate_field(self, widget: QWidget, label: QLabel) -> bool: + validator: QValidator = widget.validator() + if widget.hasAcceptableInput(): + label.setStyleSheet("") + return True + else: + label.setStyleSheet(self.ERR_STYLE) + if isinstance(validator, QRegExpValidator): + reason = "Input must match regular expression: {0!s}".format(validator.regExp().pattern()) + elif isinstance(validator, (QIntValidator, QDoubleValidator)): + reason = "Input must be between {0} and {1}".format( + validator.bottom(), validator.top()) + elif isinstance(validator, QValidator): # TODO: Test Coverage + reason = "Input does not pass validation." + else: + reason = "Invalid Input: input must conform to mask: {}".format(widget.inputMask()) + label.setToolTip(reason) + return False + + def _validate_form(self, form: QFormLayout): + res = [] + for i in range(form.rowCount()): + try: + label: QLabel = form.itemAt(i, QFormLayout.LabelRole).widget() + except AttributeError: + label = QLabel() + field: QLayoutItem = form.itemAt(i, QFormLayout.FieldRole) + if field is None: + continue + + if field.layout() is not None and isinstance(field.layout(), (QHBoxLayout, QVBoxLayout)): + layout = field.layout() + for j in range(layout.count()): + _field = layout.itemAt(j) + _widget: QWidget = _field.widget() + if isinstance(_widget, self._CAN_VALIDATE): + if _widget.validator() or _widget.inputMask(): + field = _field + break + + if field.widget() is not None and isinstance(field.widget(), self._CAN_VALIDATE): + res.append(self._validate_field(field.widget(), label)) + + return all(result for result in res) + + def validate(self, notify=True) -> bool: + res = [] + for form in self.validation_targets: + res.append(self._validate_form(form)) + valid = all(result for result in res) + if not valid and notify: + self.validation_error.setText(VALIDATION_ERR_MSG) + + return valid diff --git a/dgp/gui/ui/add_flight_dialog.ui b/dgp/gui/ui/add_flight_dialog.ui index 627dd6f..1305d6b 100644 --- a/dgp/gui/ui/add_flight_dialog.ui +++ b/dgp/gui/ui/add_flight_dialog.ui @@ -28,7 +28,7 @@ - + @@ -163,11 +163,25 @@ - - - QDialogButtonBox::Cancel|QDialogButtonBox::Ok - - + + + + + QLabel { color: red; } + + + + + + + + + + QDialogButtonBox::Cancel|QDialogButtonBox::Ok + + + + diff --git a/dgp/gui/ui/add_meter_dialog.ui b/dgp/gui/ui/add_meter_dialog.ui index 703d2ec..13c328d 100644 --- a/dgp/gui/ui/add_meter_dialog.ui +++ b/dgp/gui/ui/add_meter_dialog.ui @@ -42,7 +42,7 @@ 9 - + 9 @@ -175,14 +175,28 @@ - - - Qt::Horizontal - - - QDialogButtonBox::Cancel|QDialogButtonBox::Ok - - + + + + + QLabel { color: red; } + + + + + + + + + + Qt::Horizontal + + + QDialogButtonBox::Cancel|QDialogButtonBox::Ok + + + + diff --git a/dgp/gui/ui/create_project_dialog.ui b/dgp/gui/ui/create_project_dialog.ui index 5040b6f..936f731 100644 --- a/dgp/gui/ui/create_project_dialog.ui +++ b/dgp/gui/ui/create_project_dialog.ui @@ -112,7 +112,7 @@ 5 - + QLayout::SetNoConstraint @@ -171,6 +171,9 @@ 8 + + Project name must begin with a letter. + @@ -308,13 +311,6 @@ - - - - - - - @@ -328,6 +324,16 @@ + + + + QLabel { color: red; } + + + + + + diff --git a/dgp/gui/ui/data_import_dialog.ui b/dgp/gui/ui/data_import_dialog.ui index 688410f..66d5c4e 100644 --- a/dgp/gui/ui/data_import_dialog.ui +++ b/dgp/gui/ui/data_import_dialog.ui @@ -552,23 +552,37 @@ - - - - 0 - 0 - - - - Qt::Horizontal - - - QDialogButtonBox::Cancel|QDialogButtonBox::Ok - - - false - - + + + + + QLabel { color: red; } + + + + + + + + + + + 0 + 0 + + + + Qt::Horizontal + + + QDialogButtonBox::Cancel|QDialogButtonBox::Ok + + + false + + + + diff --git a/tests/test_dialogs.py b/tests/test_dialogs.py index ba87fbb..e483911 100644 --- a/tests/test_dialogs.py +++ b/tests/test_dialogs.py @@ -1,4 +1,4 @@ -# coding: utf-8 +# -*- coding: utf-8 -*- from datetime import datetime, date from pathlib import Path @@ -6,9 +6,11 @@ import PyQt5.QtTest as QtTest -from PyQt5.QtCore import Qt +from PyQt5.QtCore import Qt, QRegExp +from PyQt5.QtGui import QValidator, QRegExpValidator, QIntValidator from PyQt5.QtTest import QTest -from PyQt5.QtWidgets import QDialogButtonBox +from PyQt5.QtWidgets import (QDialogButtonBox, QDialog, QFormLayout, QLineEdit, QLabel, QVBoxLayout, QDateTimeEdit, + QHBoxLayout, QPushButton) from dgp.core.controllers.flight_controller import FlightController from dgp.core.models.data import DataFile @@ -20,6 +22,8 @@ from dgp.gui.dialogs.add_flight_dialog import AddFlightDialog from dgp.gui.dialogs.data_import_dialog import DataImportDialog from dgp.gui.dialogs.create_project_dialog import CreateProjectDialog +from dgp.gui.dialogs.dialog_mixins import FormValidator +from dgp.gui.dialogs.custom_validators import FileExistsValidator, DirectoryValidator from .context import APP @@ -40,33 +44,24 @@ def test_create_project_dialog(self, tmpdir): # Test field validation assert str(Path().home().joinpath('Desktop')) == dlg.prj_dir.text() - _invld_style = 'color: red' + _invld_style = 'QLabel { color: red; }' + assert not dlg.validate() assert dlg.accept() is None assert _invld_style == dlg.label_name.styleSheet() dlg.prj_name.setText("TestProject") - dlg.prj_dir.setText("") - dlg.accept() - assert 0 == len(dlg.prj_dir.text()) - assert _invld_style == dlg.label_dir.styleSheet() - assert 0 == len(accept_spy) - - # Validate project directory exists - dlg.prj_dir.setText(str(Path().joinpath("fake"))) - dlg.accept() - assert 0 == len(accept_spy) dlg.prj_name.setText("") QTest.keyClicks(dlg.prj_name, _name) assert _name == dlg.prj_name.text() - dlg.prj_dir.setText('') - QTest.keyClicks(dlg.prj_dir, str(_path)) + dlg.prj_dir.setText(str(_path.absolute())) assert str(_path) == dlg.prj_dir.text() QTest.keyClicks(dlg.qpte_notes, _notes) assert _notes == dlg.qpte_notes.toPlainText() - QTest.mouseClick(dlg.btn_create, Qt.LeftButton) + # QTest.mouseClick(dlg.btn_create, Qt.LeftButton) + dlg.accept() assert 1 == len(accept_spy) assert isinstance(dlg.project, AirborneProject) @@ -80,6 +75,7 @@ def test_add_flight_dialog(self, airborne_prj): spy = QtTest.QSignalSpy(dlg.accepted) assert spy.isValid() assert 0 == len(spy) + assert dlg.accept() is None _name = "Flight-1" _notes = "Notes for Flight-1" @@ -215,6 +211,7 @@ def test_add_gravimeter_dialog(self, airborne_prj): dlg = AddGravimeterDialog(project_ctrl) assert dlg.config_path is None + assert dlg.accept() is None _ini_path = Path('tests/at1m.ini').resolve() QTest.keyClicks(dlg.qle_config_path, str(_ini_path)) @@ -245,10 +242,140 @@ def test_add_gravimeter_dialog(self, airborne_prj): assert "AT1A-12" == project.gravimeters[1].name - - - - - +class ValidatedDialog(QDialog, FormValidator): + def __init__(self, parent=None): + super().__init__(parent=parent, flags=Qt.Dialog) + self._form1 = QFormLayout() + self._form2 = QFormLayout() + self.vlayout = QVBoxLayout() + self.vlayout.addChildLayout(self._form1) + self.vlayout.addChildLayout(self._form2) + self.setLayout(self.vlayout) + + # Form 1 Validated Input + exp = QRegExp(".{5,35}") + self.validator1 = QRegExpValidator(exp) + self.label1 = QLabel("Row0") + self.lineedit1 = QLineEdit() + self.lineedit1.setValidator(self.validator1) + self._form1.addRow(self.label1, self.lineedit1) + + # Form 2 Validated and Unvalidated Input Lines + self.validator2 = QRegExpValidator(exp) + self.label2 = QLabel("Row1") + self.lineedit2 = QLineEdit() + self.lineedit2.setValidator(self.validator2) + self._form2.addRow(self.label2, self.lineedit2) + + # Form 2 Unvalidated Line Edit + self.label3 = QLabel("Row2 (Not validated)") + self.lineedit3 = QLineEdit() + self._form2.addRow(self.label3, self.lineedit3) + + # DateTime Edit widget + self.label4 = QLabel("Date") + self.datetimeedit = QDateTimeEdit(datetime.today()) + + # Nested layout widget + self.nested_label = QLabel("Nested input") + self.nested_hbox = QHBoxLayout() + self.nested_lineedit = QLineEdit() + self.nested_validator = QRegExpValidator(exp) + self.nested_button = QPushButton("Button") + self.nested_hbox.addWidget(self.nested_lineedit) + self.nested_hbox.addWidget(self.nested_button) + self._form2.addRow(self.nested_label, self.nested_hbox) + + self.nested_vbox = QVBoxLayout() + self.nested_label2 = QLabel("Nested v input") + self.nested_lineedit2 = QLineEdit() + self.nested_validator2 = QRegExpValidator(exp) + self.nested_lineedit2.setValidator(self.nested_validator2) + self.nested_button2 = QPushButton("Button2") + self.nested_vbox.addWidget(self.nested_button2) + self.nested_vbox.addWidget(self.nested_lineedit2) + + @property + def validation_targets(self): + return [self._form1, self._form2] + + +class TestDialogMixins: + def test_dialog_form_validator(self): + """Test the FormValidator mixin class, which scans QFormLayout label/field pairs + and ensures that any set QValidators pass. + + Labels should be set to RED if their corresponding field is invalid + """ + dlg = ValidatedDialog() + assert issubclass(ValidatedDialog, FormValidator) + assert isinstance(dlg.validation_targets[0], QFormLayout) + + assert not dlg.lineedit1.hasAcceptableInput() + dlg.lineedit1.setText("Has 5 characters or more") + assert dlg.lineedit1.hasAcceptableInput() + dlg.lineedit1.setText("x"*36) + assert not dlg.lineedit1.hasAcceptableInput() + + assert not dlg.validate() + assert FormValidator.ERR_STYLE == dlg.label1.styleSheet() + + dlg.lineedit1.setText("This is acceptable") + dlg.lineedit2.setText("This is also OK") + assert dlg.lineedit1.hasAcceptableInput() + assert dlg.validate() + assert "" == dlg.label1.styleSheet() + + dlg.lineedit1.setText("") + assert not dlg.validate() + + # Test adding an input mask to lineedit3 + dlg.lineedit1.setText("Something valid") + dlg.lineedit3.setText("") + dlg.lineedit3.setInputMask("AAA-AAA") # Require 6 alphabetical chars separated by '-' + assert not dlg.validate() + assert dlg.label3.toolTip() == "Invalid Input: input must conform to mask: AAA-AAA" + + QTest.keyClicks(dlg.lineedit3, "ABCDEF") + assert dlg.validate() + + # What about nested layouts (e.g. where a QHboxLayout is used within a form field) + dlg.nested_lineedit.setValidator(dlg.nested_validator) + assert not dlg.validate() + dlg.nested_lineedit.setText("Valid String") + assert dlg.validate() + + dlg._form2.addRow(dlg.nested_label2, dlg.nested_vbox) + assert not dlg.validate() + + dlg.nested_lineedit2.setText("Valid String") + assert dlg.validate() + + int_validator = QIntValidator(25, 100) + dlg.nested_lineedit2.setValidator(int_validator) + assert not dlg.validate() + dlg.nested_lineedit2.setText("26") + assert dlg.validate() + + def test_file_exists_validator(self): + line_edit = QLineEdit() + validator = FileExistsValidator() + line_edit.setValidator(validator) + + assert (QValidator.Acceptable, "tests/at1m.ini", 0) == validator.validate("tests/at1m.ini", 0) + assert (QValidator.Intermediate, "tests", 0) == validator.validate("tests", 0) + assert (QValidator.Invalid, 123, 0) == validator.validate(123, 0) + + def test_directory_validator(self): + exist_validator = DirectoryValidator(exist_ok=True) + noexist_validator = DirectoryValidator(exist_ok=False) + + _valid_path = "tests" + _invalid_path = "tests/at1m.ini" + assert QValidator.Acceptable == exist_validator.validate(_valid_path, 0)[0] + assert QValidator.Invalid == exist_validator.validate(123, 0)[0] + assert QValidator.Invalid == exist_validator.validate(_invalid_path, 0)[0] + assert QValidator.Intermediate == noexist_validator.validate(_valid_path, 0)[0] + assert QValidator.Intermediate == exist_validator.validate(_valid_path + "/nonexistent", 0)[0] From 0aea99037a71f63937bae628b26f41309908879b Mon Sep 17 00:00:00 2001 From: Zachery Brady Date: Fri, 6 Jul 2018 09:48:11 -0600 Subject: [PATCH 133/236] Updates to project models. Added test coverage. Simplified project model classes - removed redundant @property definitions, AttributeProxy will still check that an attribute exists before allowing it to be set, but most of the properties served no purpose other than to add lines of code. Added more comprehensive tests for the Project Models, particularly the Gravimeter class, and some additional tests of the serialization/deserialization methods. --- dgp/core/controllers/controller_helpers.py | 39 ++++++- dgp/core/controllers/controller_interfaces.py | 30 +++++- dgp/core/controllers/controller_mixins.py | 26 ++--- dgp/core/controllers/datafile_controller.py | 5 + dgp/core/controllers/flight_controller.py | 44 ++++---- dgp/core/controllers/flightline_controller.py | 5 + dgp/core/models/data.py | 48 +++------ dgp/core/models/flight.py | 100 ++++-------------- dgp/core/models/meter.py | 47 ++------ dgp/core/models/project.py | 6 +- dgp/core/oid.py | 8 +- dgp/gui/dialogs/add_flight_dialog.py | 12 +-- dgp/gui/dialogs/data_import_dialog.py | 2 +- tests/test_oid.py | 9 ++ tests/test_project_models.py | 81 ++++++++++++-- 15 files changed, 255 insertions(+), 207 deletions(-) diff --git a/dgp/core/controllers/controller_helpers.py b/dgp/core/controllers/controller_helpers.py index f42580c..c1abfb9 100644 --- a/dgp/core/controllers/controller_helpers.py +++ b/dgp/core/controllers/controller_helpers.py @@ -9,6 +9,25 @@ def confirm_action(title: str, message: str, parent: Optional[Union[QWidget, QObject]]=None): # pragma: no cover + """ + Prompt the user for a yes/no confirmation, useful when performing + destructive actions e.g. deleting a project member. + + Parameters + ---------- + title : str + message : str + parent : QWidget, optional + The parent widget for this dialog, if not specified the dialog + may not be destroyed when the main UI application quits. + + Returns + ------- + bool + True if user confirms the dialog (selects 'Yes') + False if the user cancels or otherwise aborts the dialog + + """ dlg = QMessageBox(QMessageBox.Question, title, message, QMessageBox.Yes | QMessageBox.No, parent=parent) dlg.setDefaultButton(QMessageBox.No) @@ -16,7 +35,25 @@ def confirm_action(title: str, message: str, return dlg.result() == QMessageBox.Yes -def get_input(title: str, label: str, text: str, parent: QWidget=None): # pragma: no cover +def get_input(title: str, label: str, text: str = "", parent: QWidget=None): # pragma: no cover + """ + Get text input from the user using a simple Qt Dialog Box + + Parameters + ---------- + title : str + label : str + text : str, optional + Existing string to display in the input dialog + + parent : QWidget, optional + The parent widget for this dialog, if not specified the dialog + may not be destroyed when the main UI application quits. + + Returns + ------- + + """ new_text, result = QInputDialog.getText(parent, title, label, text=text) if result: return new_text diff --git a/dgp/core/controllers/controller_interfaces.py b/dgp/core/controllers/controller_interfaces.py index 2b8d425..156c16a 100644 --- a/dgp/core/controllers/controller_interfaces.py +++ b/dgp/core/controllers/controller_interfaces.py @@ -26,7 +26,25 @@ def set_parent(self, parent) -> None: class IParent: - def add_child(self, child) -> None: + def add_child(self, child) -> 'IBaseController': + """Add a child object to the controller, and its underlying + data object. + + Parameters + ---------- + child : + The child data object to be added (from :mod:`dgp.core.models`) + + Returns + ------- + :class:`IBaseController` + A reference to the controller object wrapping the added child + + Raises + ------ + :exc:`TypeError` + If the child is not an allowed type for the controller. + """ raise NotImplementedError def remove_child(self, child, row: int) -> None: @@ -39,10 +57,18 @@ def get_child(self, uid: Union[str, OID]) -> IChild: class IBaseController(QStandardItem, AttributeProxy): @property def uid(self) -> OID: + """Return the Object IDentifier of the underlying + model object + + Returns + ------- + :obj:`~dgp.core.oid.OID` + The OID of the underlying data model object + """ raise NotImplementedError -class IAirborneController(IBaseController): +class IAirborneController(IBaseController, IParent): def add_flight(self): raise NotImplementedError diff --git a/dgp/core/controllers/controller_mixins.py b/dgp/core/controllers/controller_mixins.py index a06bc30..5999ee1 100644 --- a/dgp/core/controllers/controller_mixins.py +++ b/dgp/core/controllers/controller_mixins.py @@ -4,7 +4,7 @@ class AttributeProxy: """ - This mixin provides an interface to selectively allow getattr calls against the + This mixin class provides an interface to selectively allow getattr calls against the proxied or underlying object in a wrapper class. getattr returns successfully only for attributes decorated with @property in the proxied instance. """ @@ -14,26 +14,20 @@ def proxied(self) -> object: raise NotImplementedError def update(self): - """Called when an attribute is set, use this to update UI values as necessary""" - raise NotImplementedError + """Called when an attribute is set, override this to perform + UI specific updates, e.g. set the DisplayRole data for a component. + """ + pass def get_attr(self, key: str) -> Any: - klass = self.proxied.__class__ - if key in klass.__dict__ and isinstance(klass.__dict__[key], property): + if hasattr(self.proxied, key): return getattr(self.proxied, key) + else: + raise AttributeError("Object {!r} has no attribute {}".format(self.proxied, key)) def set_attr(self, key: str, value: Any): - attrs = self.proxied.__class__.__dict__ - if key in attrs and isinstance(attrs[key], property): + if hasattr(self.proxied, key): setattr(self.proxied, key, value) self.update() else: - raise AttributeError("Attribute {!s} does not exist or is private on class {!s}" - .format(key, self.proxied.__class__.__name__)) - - def __getattr__(self, key: str): - # TODO: This fails if the property is defined in a super-class - klass = self.proxied.__class__ - if key in klass.__dict__ and isinstance(klass.__dict__[key], property): - return getattr(self.proxied, key) - raise AttributeError(klass.__name__ + " has no public attribute %s" % key) + raise AttributeError("Object {!r} has no attribute {}".format(self.proxied, key)) diff --git a/dgp/core/controllers/datafile_controller.py b/dgp/core/controllers/datafile_controller.py index 99ef525..96f72b1 100644 --- a/dgp/core/controllers/datafile_controller.py +++ b/dgp/core/controllers/datafile_controller.py @@ -3,6 +3,7 @@ from PyQt5.QtCore import Qt from PyQt5.QtGui import QStandardItem, QIcon, QColor, QBrush +from dgp.core.oid import OID from dgp.core.controllers.controller_interfaces import IFlightController from dgp.core.controllers.controller_mixins import AttributeProxy from dgp.core.models.data import DataFile @@ -34,6 +35,10 @@ def __init__(self, datafile: DataFile, controller: IFlightController): lambda: self.flight.remove_child(self._datafile, self.row()))) ] + @property + def uid(self) -> OID: + return self._datafile.uid + @property def flight(self) -> IFlightController: return self._flight_ctrl diff --git a/dgp/core/controllers/flight_controller.py b/dgp/core/controllers/flight_controller.py index 374c980..7ad215f 100644 --- a/dgp/core/controllers/flight_controller.py +++ b/dgp/core/controllers/flight_controller.py @@ -20,7 +20,6 @@ from . import controller_helpers as helpers from .project_containers import ProjectFolder - FOLDER_ICON = ":/icons/folder_open.png" @@ -210,24 +209,28 @@ def set_active_child(self, child: DataFileController, emit: bool = True): self._active_trajectory = child child.set_active() - # TODO: Implement and add test coverage def get_active_child(self): + # TODO: Implement and add test coverage pass - def add_child(self, child: Union[FlightLine, DataFile]) -> Union[FlightLineController, DataFileController, None]: - """ - Add a child to the underlying Flight, and to the model representation + def add_child(self, child: Union[FlightLine, DataFile]) -> Union[FlightLineController, DataFileController]: + """Adds a child to the underlying Flight, and to the model representation for the appropriate child type. Parameters ---------- - child: Union[FlightLine, DataFile] + child : Union[:obj:`FlightLine`, :obj:`DataFile`] The child model instance - either a FlightLine or DataFile Returns ------- - bool: True on successful adding of child, - False on fail (e.g. child is not instance of FlightLine or DataFile + Union[:obj:`FlightLineController`, :obj:`DataFileController`] + Returns a reference to the controller encapsulating the added child + + Raises + ------ + :exc:`TypeError` + if child is not a :obj:`FlightLine` or :obj:`DataFile` """ child_key = type(child) @@ -241,27 +244,28 @@ def add_child(self, child: Union[FlightLine, DataFile]) -> Union[FlightLineContr def remove_child(self, child: Union[FlightLine, DataFile], row: int, confirm: bool = True) -> bool: """ - Remove the specified child primitive from the underlying :obj:`Flight` + Remove the specified child primitive from the underlying :obj:`~dgp.core.models.flight.Flight` and from the respective model representation within the FlightController - remove_child verifies that the given row number is valid, and that the data - at the given row == the given child. - Parameters ---------- - child: Union[FlightLine, DataFile] - The child primitive object to be removed - row: int + child : Union[:obj:`~dgp.core.models.flight.FlightLine`, :obj:`~dgp.core.models.data.DataFile`] + The child model object to be removed + row : int The row number of the child's controller wrapper - confirm: bool Default[True] + confirm : bool, optional If True spawn a confirmation dialog requiring user input to confirm removal Returns ------- - bool: - True on success - False on fail e.g. child is not a member of this Flight, or not of appropriate type, - or on a row/child mis-match + bool + True if successful + False if user does not confirm removal action + + Raises + ------ + :exc:`TypeError` + if child is not a :obj:`FlightLine` or :obj:`DataFile` """ if type(child) not in self._control_map: diff --git a/dgp/core/controllers/flightline_controller.py b/dgp/core/controllers/flightline_controller.py index e847dbf..34e0b39 100644 --- a/dgp/core/controllers/flightline_controller.py +++ b/dgp/core/controllers/flightline_controller.py @@ -4,6 +4,7 @@ from PyQt5.QtCore import Qt from PyQt5.QtGui import QStandardItem, QIcon +from dgp.core.oid import OID from dgp.core.controllers.controller_interfaces import IFlightController from dgp.core.controllers.controller_mixins import AttributeProxy from dgp.core.models.flight import FlightLine @@ -19,6 +20,10 @@ def __init__(self, flightline: FlightLine, controller: IFlightController): self.setText(str(self._flightline)) self.setIcon(QIcon(":/icons/AutosizeStretch_16x.png")) + @property + def uid(self) -> OID: + return self._flightline.uid + @property def flight(self) -> IFlightController: return self._flight_ctrl diff --git a/dgp/core/models/data.py b/dgp/core/models/data.py index 5c9fb59..c727116 100644 --- a/dgp/core/models/data.py +++ b/dgp/core/models/data.py @@ -7,38 +7,25 @@ class DataFile: - __slots__ = ('_parent', '_uid', '_date', '_name', '_group', '_source_path', - '_column_format') + __slots__ = ('parent', 'uid', 'date', 'name', 'group', 'source_path', + 'column_format') def __init__(self, group: str, date: datetime, source_path: Path, name: Optional[str] = None, column_format=None, uid: Optional[OID] = None, parent=None): - self._parent = parent - self._uid = uid or OID(self) - self._uid.set_pointer(self) - self._group = group.lower() - self._date = date - self._source_path = Path(source_path) - self._name = name or self._source_path.name - self._column_format = column_format - - @property - def uid(self) -> OID: - return self._uid - - @property - def name(self) -> str: - """Return the file name of the source data file""" - return self._name + self.parent = parent + self.uid = uid or OID(self) + self.uid.set_pointer(self) + self.group = group.lower() + self.date = date + self.source_path = Path(source_path) + self.name = name or self.source_path.name + self.column_format = column_format @property def label(self) -> str: return "[%s] %s" % (self.group, self.name) - @property - def group(self) -> str: - return self._group - @property def hdfpath(self) -> str: """Construct the HDF5 Node path where the DataFile is stored @@ -48,19 +35,14 @@ def hdfpath(self) -> str: An underscore (_) is prepended to the parent and uid ID's to suppress the NaturalNameWarning generated if the UID begins with a number (invalid Python identifier). """ - return '/_{parent}/{group}/_{uid}'.format(parent=self._parent.uid.base_uuid, - group=self._group, uid=self._uid.base_uuid) - - @property - def source_path(self) -> Path: - if self._source_path is not None: - return Path(self._source_path) + return '/_{parent}/{group}/_{uid}'.format(parent=self.parent.uid.base_uuid, + group=self.group, uid=self.uid.base_uuid) def set_parent(self, parent): - self._parent = parent + self.parent = parent def __str__(self): - return "(%s) :: %s" % (self._group, self.hdfpath) + return "(%s) :: %s" % (self.group, self.hdfpath) def __hash__(self): - return hash(self._uid) + return hash(self.uid) diff --git a/dgp/core/models/flight.py b/dgp/core/models/flight.py index a271059..266231c 100644 --- a/dgp/core/models/flight.py +++ b/dgp/core/models/flight.py @@ -8,21 +8,17 @@ class FlightLine: - __slots__ = ('_uid', '_label', '_start', '_stop', '_sequence', '_parent') + __slots__ = ('uid', 'parent', 'label', 'sequence', '_start', '_stop') def __init__(self, start: float, stop: float, sequence: int, label: Optional[str] = "", uid: Optional[OID] = None): - self._parent = None - self._uid = uid or OID(self) - self._uid.set_pointer(self) + self.uid = uid or OID(self) + self.uid.set_pointer(self) + self.parent = None + self.label = label + self.sequence = sequence self._start = start self._stop = stop - self._sequence = sequence - self._label = label - - @property - def uid(self) -> OID: - return self._uid @property def start(self) -> datetime: @@ -40,20 +36,8 @@ def stop(self) -> datetime: def stop(self, value: float) -> None: self._stop = value - @property - def label(self) -> str: - return self._label - - @label.setter - def label(self, value: str) -> None: - self._label = value - - @property - def sequence(self) -> int: - return self._sequence - def set_parent(self, parent): - self._parent = parent + self.parent = parent def __str__(self): return 'Line {} {:%H:%M} -> {:%H:%M}'.format(self.sequence, self.start, self.stop) @@ -65,69 +49,25 @@ class Flight: Define a Flight class used to record and associate data with an entire survey flight (takeoff -> landing) """ - __slots__ = ('_uid', '_name', '_flight_lines', '_data_files', '_meter', '_date', - '_notes', '_sequence', '_duration', '_parent') + __slots__ = ('uid', 'name', '_flight_lines', '_data_files', '_meter', 'date', + 'notes', 'sequence', 'duration', 'parent') def __init__(self, name: str, date: Optional[datetime] = None, notes: Optional[str] = None, sequence: int = 0, duration: int = 0, meter: str = None, uid: Optional[OID] = None, **kwargs): - self._parent = None - self._uid = uid or OID(self, name) - self._uid.set_pointer(self) - self._name = name - self._date = date - self._notes = notes - self._sequence = sequence - self._duration = duration + self.parent = None + self.uid = uid or OID(self, name) + self.uid.set_pointer(self) + self.name = name + self.date = date or datetime.today() + self.notes = notes + self.sequence = sequence + self.duration = duration self._flight_lines = kwargs.get('flight_lines', []) # type: List[FlightLine] self._data_files = kwargs.get('data_files', []) # type: List[DataFile] self._meter = meter - @property - def name(self) -> str: - return self._name - - @name.setter - def name(self, value: str) -> None: - self._name = value - - @property - def date(self) -> datetime: - return self._date - - @date.setter - def date(self, value: datetime) -> None: - self._date = value - - @property - def notes(self) -> str: - return self._notes - - @notes.setter - def notes(self, value: str) -> None: - self._notes = value - - @property - def sequence(self) -> int: - return self._sequence - - @sequence.setter - def sequence(self, value: int) -> None: - self._sequence = value - - @property - def duration(self) -> int: - return self._duration - - @duration.setter - def duration(self, value: int) -> None: - self._duration = value - - @property - def uid(self) -> OID: - return self._uid - @property def data_files(self) -> List[DataFile]: return self._data_files @@ -137,13 +77,15 @@ def flight_lines(self) -> List[FlightLine]: return self._flight_lines def add_child(self, child: Union[FlightLine, DataFile, Gravimeter]) -> None: + # TODO: Is add/remove child necesarry or useful, just allow direct access to the underlying lists? if child is None: return if isinstance(child, FlightLine): self._flight_lines.append(child) elif isinstance(child, DataFile): self._data_files.append(child) - elif isinstance(child, Gravimeter): + elif isinstance(child, Gravimeter): # pragma: no cover + # TODO: Implement this properly self._meter = child.uid.base_uuid else: raise TypeError("Invalid child type supplied: <%s>" % str(type(child))) @@ -163,7 +105,7 @@ def remove_child(self, child: Union[FlightLine, DataFile, OID]) -> bool: return True def set_parent(self, parent): - self._parent = parent + self.parent = parent def __str__(self) -> str: return self.name diff --git a/dgp/core/models/meter.py b/dgp/core/models/meter.py index de7efe9..4cd7c8f 100644 --- a/dgp/core/models/meter.py +++ b/dgp/core/models/meter.py @@ -26,46 +26,17 @@ class Gravimeter: def __init__(self, name: str, config: dict = None, uid: Optional[OID] = None, **kwargs): - self._parent = None - self._uid = uid or OID(self) - self._uid.set_pointer(self) - self._type = "AT1A" - self._name = name - self._column_format = "AT1A Airborne" - self._config = config - self._attributes = kwargs.get('attributes', {}) - - @property - def uid(self) -> OID: - return self._uid - - @property - def name(self) -> str: - return self._name - - @name.setter - def name(self, value: str) -> None: - # ToDo: Regex validation? - self._name = value - - @property - def column_format(self): - return self._column_format - - @property - def sensor_type(self) -> str: - return self._type - - @property - def config(self) -> dict: - return self._config - - @config.setter - def config(self, value: dict) -> None: - self._config = value + self.parent = None + self.uid = uid or OID(self) + self.uid.set_pointer(self) + self.type = "AT1A" + self.name = name + self.column_format = "AT1A Airborne" + self.config = config + self.attributes = kwargs.get('attributes', {}) def set_parent(self, parent): - self._parent = parent + self.parent = parent @staticmethod def read_config(path: Path) -> Dict[str, Union[str, int, float]]: diff --git a/dgp/core/models/project.py b/dgp/core/models/project.py index cf93bbd..10ef8c1 100644 --- a/dgp/core/models/project.py +++ b/dgp/core/models/project.py @@ -148,7 +148,7 @@ def object_hook(self, json_o: dict): else: # Handle project entity types klass = {self._klass.__name__: self._klass, **project_entities}.get(_type, None) - if klass is None: + if klass is None: # pragma: no cover raise AttributeError("Unhandled class %s in JSON data. Class is not defined" " in entity map." % _type) instance = klass(**params) @@ -221,7 +221,7 @@ def add_child(self, child) -> None: self._gravimeters.append(child) self._modify() else: - print("Invalid child: " + str(type(child))) + raise TypeError("Invalid child type: {!r}".format(child)) def remove_child(self, child_id: OID) -> bool: child = child_id.reference # type: Gravimeter @@ -275,7 +275,7 @@ def to_json(self, to_file=False, indent=None) -> Union[str, bool]: except IOError: raise else: - pprint(json.dumps(self, cls=ProjectEncoder, indent=2)) + # pprint(json.dumps(self, cls=ProjectEncoder, indent=2)) return True return json.dumps(self, cls=ProjectEncoder, indent=indent) diff --git a/dgp/core/oid.py b/dgp/core/oid.py index 20430fc..4c9ce03 100644 --- a/dgp/core/oid.py +++ b/dgp/core/oid.py @@ -5,8 +5,12 @@ class OID: - """Object IDentifier - Replacing simple str UUID's that had been used. - OID's hold a reference to the object it was created for. + """Object IDentifier + + Designed as a replacement for the simple string UUID's used previously. + OID's hold a reference to the object it was created for. + OID's can also contain simple meta-data such as a tag for the object it + references. """ def __init__(self, obj: Optional[Any] = None, tag: Optional[str] = None, base_uuid: str = None): diff --git a/dgp/gui/dialogs/add_flight_dialog.py b/dgp/gui/dialogs/add_flight_dialog.py index e9d52ea..89c66a8 100644 --- a/dgp/gui/dialogs/add_flight_dialog.py +++ b/dgp/gui/dialogs/add_flight_dialog.py @@ -76,12 +76,12 @@ def accept(self): super().accept() def _set_flight(self, flight: IFlightController): - self.setWindowTitle("Properties: " + flight.name) - self.qle_flight_name.setText(flight.name) - self.qte_notes.setText(flight.notes) - self.qsb_duration.setValue(flight.duration) - self.qsb_sequence.setValue(flight.sequence) - self.qde_flight_date.setDate(flight.date) + self.setWindowTitle("Properties: " + flight.get_attr('name')) + self.qle_flight_name.setText(flight.get_attr('name')) + self.qte_notes.setText(flight.get_attr('notes')) + self.qsb_duration.setValue(flight.get_attr('duration')) + self.qsb_sequence.setValue(flight.get_attr('sequence')) + self.qde_flight_date.setDate(flight.get_attr('date')) @classmethod def from_existing(cls, flight: IFlightController, diff --git a/dgp/gui/dialogs/data_import_dialog.py b/dgp/gui/dialogs/data_import_dialog.py index 07a7c6a..640ec0b 100644 --- a/dgp/gui/dialogs/data_import_dialog.py +++ b/dgp/gui/dialogs/data_import_dialog.py @@ -183,7 +183,7 @@ def _load_file(self): return True def _set_date(self): - self.qde_date.setDate(self.flight.date) + self.qde_date.setDate(self.flight.get_attr('date')) @pyqtSlot(name='_browse') def _browse(self): # pragma: no cover diff --git a/tests/test_oid.py b/tests/test_oid.py index 594e4f4..188c8ef 100644 --- a/tests/test_oid.py +++ b/tests/test_oid.py @@ -10,3 +10,12 @@ def test_oid_equivalence(): oid2 = OID('flt') assert not oid1 == oid2 + + oid2_clone = OID(tag="test", base_uuid=oid2.base_uuid) + assert oid2 == oid2_clone + assert "oid" == oid2_clone.group + assert "test" == oid2_clone.tag + + assert str(oid2.base_uuid) == oid2_clone + + assert not oid2 == dict(expect="Failure") diff --git a/tests/test_project_models.py b/tests/test_project_models.py index 1d238ce..9f8ef83 100644 --- a/tests/test_project_models.py +++ b/tests/test_project_models.py @@ -7,13 +7,14 @@ import json import time import random -from datetime import datetime +from datetime import datetime, date from typing import Tuple from uuid import uuid4 from pathlib import Path from pprint import pprint import pytest +from pandas import DataFrame from dgp.core.models.data import DataFile from dgp.core.models import project, flight @@ -25,6 +26,7 @@ def make_flight(): def _factory() -> Tuple[str, flight.Flight]: name = str(uuid4().hex)[:12] return name, flight.Flight(name) + return _factory @@ -38,9 +40,33 @@ def _factory(): return flight.FlightLine(datetime.now().timestamp(), datetime.now().timestamp() + round(random.random() * 1000), seq) + return _factory +def test_flight_line(): + _start0 = datetime.now().timestamp() + _stop0 = _start0 + 1688 + _label0 = "Line0" + + line = flight.FlightLine(_start0, _stop0, 0, _label0) + + _start0dt = datetime.fromtimestamp(_start0) + _stop0dt = datetime.fromtimestamp(_stop0) + + assert _start0dt == line.start + assert _stop0dt == line.stop + assert _label0 == line.label + + _start1 = datetime.now().timestamp() + 100 + line.start = _start1 + assert datetime.fromtimestamp(_start1) == line.start + + _stop1 = _start1 + 2048 + line.stop = _stop1 + assert datetime.fromtimestamp(_stop1) == line.stop + + def test_flight_actions(make_flight, make_line): flt = flight.Flight('test_flight') assert 'test_flight' == flt.name @@ -67,11 +93,16 @@ def test_flight_actions(make_flight, make_line): with pytest.raises(TypeError): f1.add_child('not a flight line') + assert f1.add_child(None) is None + assert line1 in f1.flight_lines f1.remove_child(line1.uid) assert line1 not in f1.flight_lines + assert not f1.remove_child("Not a child") + assert not f1.remove_child(None) + f1.add_child(line1) f1.add_child(line2) @@ -87,8 +118,14 @@ def test_project_attr(): prj = project.AirborneProject(name="Project-1", path=prj_path, description="Test Project 1") assert "Project-1" == prj.name + prj.name = " Project With Whitespace " + assert "Project With Whitespace" == prj.name + assert prj_path == prj.path assert "Test Project 1" == prj.description + prj.description = " Description with gratuitous whitespace " + assert abs(prj.modify_time - datetime.utcnow()).microseconds < 10 + assert "Description with gratuitous whitespace" == prj.description prj.set_attr('tie_value', 1234) assert 1234 == prj.tie_value @@ -101,6 +138,12 @@ def test_project_attr(): assert 2345 == prj.get_attr('_my_private_val') +def test_project_add_child(make_flight, tmpdir): + prj = project.AirborneProject(name="Project-1.5", path=Path(tmpdir)) + with pytest.raises(TypeError): + prj.add_child(None) + + def test_project_get_child(make_flight): prj = project.AirborneProject(name="Project-2", path=Path('.')) f1_name, f1 = make_flight() @@ -114,6 +157,9 @@ def test_project_get_child(make_flight): assert f3 == prj.get_child(f3.uid) assert not f2 == prj.get_child(f1.uid) + with pytest.raises(IndexError): + fx = prj.get_child(str(uuid4().hex)) + def test_project_remove_child(make_flight): prj = project.AirborneProject(name="Project-3", path=Path('.')) @@ -136,8 +182,9 @@ def test_project_remove_child(make_flight): assert 1 == len(prj.flights) -def test_project_serialize(make_flight, make_line): - prj_path = Path('./prj-1') +def test_project_serialize(make_flight, make_line, tmpdir): + prj_path = Path(tmpdir).joinpath("project") + prj_path.mkdir() prj = project.AirborneProject(name="Project-3", path=prj_path, description="Test Project Serialization") f1_name, f1 = make_flight() # type: flight.Flight @@ -156,7 +203,7 @@ def test_project_serialize(make_flight, make_line): # pprint(decoded_dict) assert 'Project-3' == decoded_dict['name'] - assert {'_type': 'Path', 'path': str(Path('.').joinpath('prj-1').resolve())} == decoded_dict['path'] + assert {'_type': 'Path', 'path': str(prj_path.resolve())} == decoded_dict['path'] assert 'start_tie_value' in decoded_dict['attributes'] assert 1234.90 == decoded_dict['attributes']['start_tie_value'] assert 'end_tie_value' in decoded_dict['attributes'] @@ -164,6 +211,16 @@ def test_project_serialize(make_flight, make_line): for flight_dict in decoded_dict['flights']: assert '_type' in flight_dict and flight_dict['_type'] == 'Flight' + _date = date.today() + enc_date = json.dumps(_date, cls=project.ProjectEncoder) + assert _date == json.loads(enc_date, cls=project.ProjectDecoder, klass=None) + with pytest.raises(TypeError): + json.dumps(DataFrame([0, 1]), cls=project.ProjectEncoder) + + # Test serialize to file + prj.to_json(to_file=True) + assert prj_path.joinpath(project.PROJECT_FILE_NAME).exists() + def test_project_deserialize(make_flight, make_line): attrs = { @@ -234,7 +291,7 @@ def test_parent_child_serialization(): data1 = DataFile('gravity', datetime.now(), Path('./data1.dat')) flt.add_child(data1) - assert flt == data1._parent + assert flt == data1.parent prj.add_child(flt) assert flt in prj.flights @@ -248,6 +305,18 @@ def test_parent_child_serialization(): flt_ = decoded.flights[0] assert 1 == len(flt_.data_files) data_ = flt_.data_files[0] - assert flt_ == data_._parent + assert flt_ == data_.parent + + +def test_gravimeter(): + meter = Gravimeter("AT1A-13") + assert "AT1A" == meter.type + assert "AT1A-13" == meter.name + assert meter.config is None + config = meter.read_config(Path("tests/at1m.ini")) + assert isinstance(config, dict) + with pytest.raises(FileNotFoundError): + config = meter.read_config(Path("tests/at1a-fake.ini")) + assert {} == meter.read_config(Path("tests/sample_gravity.csv")) From 448117b82cf50f294574d12af2d31025febb89e6 Mon Sep 17 00:00:00 2001 From: Zachery Brady Date: Fri, 6 Jul 2018 09:52:04 -0600 Subject: [PATCH 134/236] Refactoring of project and deletion of deprecated UI code. Delete dgp\gui\models and old_dialogs - legacy UI code used prior to the new Project Models. Delete types.py which contained Abstract classes and Tree Classes used by the above legacy code. --- dgp/core/types/tuples.py | 7 + dgp/gui/models.py | 561 --------------------- dgp/gui/old_dialogs.py | 359 ------------- dgp/gui/plotting/plotters.py | 2 +- dgp/{core => gui}/views/ProjectTreeView.py | 10 +- dgp/{core => gui}/views/__init__.py | 0 dgp/lib/types.py | 489 ------------------ 7 files changed, 12 insertions(+), 1416 deletions(-) create mode 100644 dgp/core/types/tuples.py delete mode 100644 dgp/gui/models.py delete mode 100644 dgp/gui/old_dialogs.py rename dgp/{core => gui}/views/ProjectTreeView.py (91%) rename dgp/{core => gui}/views/__init__.py (100%) delete mode 100644 dgp/lib/types.py diff --git a/dgp/core/types/tuples.py b/dgp/core/types/tuples.py new file mode 100644 index 0000000..5a9143e --- /dev/null +++ b/dgp/core/types/tuples.py @@ -0,0 +1,7 @@ +# -*- coding: utf-8 -*- + +from collections import namedtuple + +LineUpdate = namedtuple('LineUpdate', ['action', 'uid', 'start', + 'stop', 'label']) + diff --git a/dgp/gui/models.py b/dgp/gui/models.py deleted file mode 100644 index e98ac88..0000000 --- a/dgp/gui/models.py +++ /dev/null @@ -1,561 +0,0 @@ -# -*- coding: utf-8 -*- - -import logging -from typing import List, Dict - -from PyQt5.QtCore import Qt, QAbstractTableModel -from PyQt5.QtWidgets import QWidget, QStyledItemDelegate, QStyleOptionViewItem -from PyQt5.QtCore import (QModelIndex, QVariant, QAbstractItemModel, - QMimeData, pyqtSignal, pyqtBoundSignal) -from PyQt5.QtGui import QIcon, QBrush, QColor -from PyQt5.QtWidgets import QComboBox - -from dgp.lib.types import (AbstractTreeItem, BaseTreeItem, - ChannelListHeader, DataChannel) -from dgp.lib.etc import gen_uuid - -""" -Dynamic Gravity Processor (DGP) :: gui/models.py -License: Apache License V2 - -Overview: -Defines the various custom Qt Models derived from QAbstract*Model used to -display data in the graphical interface via a Q*View (List/Tree/Table) - -See Also --------- -dgp.lib.types.py : Defines many of the objects used within the models - -""" -_log = logging.getLogger(__name__) - - -class TableModel(QAbstractTableModel): - """Simple table model of key: value pairs. - Parameters - ---------- - """ - - def __init__(self, header, editable_header=False, parent=None): - super().__init__(parent=parent) - - self._header = list(header) - self._editable = editable_header - self._data = [] - self._header_index = True - - @property - def table_header(self): - return self._header - - @table_header.setter - def table_header(self, value): - self._header = list(value) - self.layoutChanged.emit() - - @property - def model_data(self): - return self._data - - @model_data.setter - def model_data(self, value): - self._data = value - while len(self._header) < len(self._data[0]): - self._header.append('None') - self.layoutChanged.emit() - - def value_at(self, row, col): - return self._data[row][col] - - def set_row(self, row, values): - try: - self._data[row] = values - except IndexError: - return False - self.dataChanged.emit(self.index(row, 0), - self.index(row, self.columnCount())) - return True - - # Required implementations of super class (for a basic, non-editable table) - - def rowCount(self, parent=None, *args, **kwargs): - return len(self._data) + 1 - - def columnCount(self, parent=None, *args, **kwargs): - """Assume all data has same number of columns, but header may differ. - Returns the greater of header length or data length.""" - try: - if len(self._data): - return max(len(self._data[0]), len(self._header)) - return len(self._header) - except IndexError: - return 0 - - def data(self, index: QModelIndex, role=None): - if role == Qt.DisplayRole or role == Qt.EditRole: - if index.row() == 0: - try: - return self._header[index.column()] - except IndexError: - return 'None' - try: - val = self._data[index.row() - 1][index.column()] - return val - except IndexError: - return QVariant() - return QVariant() - - def flags(self, index: QModelIndex): - flags = Qt.ItemIsSelectable | Qt.ItemIsEnabled - if index.row() == 0 and self._editable: - # Allow editing of first row (Column headers) - flags = flags | Qt.ItemIsEditable - return flags - - def headerData(self, section, orientation, role=None): - if role == Qt.DisplayRole and orientation == Qt.Horizontal: - if self._header_index: - return section - return QVariant() - - # Required implementations of super class for editable table ############# - - def setData(self, index: QModelIndex, value, role=Qt.EditRole): - """Basic implementation of editable model. This doesn't propagate the - changes to the underlying object upon which the model was based - though (yet)""" - if index.isValid() and role == Qt.EditRole: - self._header[index.column()] = value - idx = self.index(0, index.column()) - self.dataChanged.emit(idx, idx) - return True - else: - return False - - -class BaseTreeModel(QAbstractItemModel): - """ - Define common methods required for a Tree Model based on - QAbstractItemModel. - Subclasses must provide implementations for update() and data() - """ - - def __init__(self, root_item: AbstractTreeItem, parent=None): - super().__init__(parent=parent) - self._root = root_item - - @property - def root(self): - return self._root - - def parent(self, index: QModelIndex = QModelIndex()) -> QModelIndex: - """ - Returns the parent QModelIndex of the given index. If the object - referenced by index does not have a parent (i.e. the root node) an - invalid QModelIndex() is constructed and returned. - """ - if not index.isValid(): - return QModelIndex() - - child_item = index.internalPointer() # type: AbstractTreeItem - parent_item = child_item.parent # type: AbstractTreeItem - if parent_item == self._root or parent_item is None: - return QModelIndex() - return self.createIndex(parent_item.row(), 0, parent_item) - - def update(self, *args, **kwargs): - raise NotImplementedError("Update must be implemented by subclass.") - - def data(self, index: QModelIndex, role=None): - raise NotImplementedError("data() must be implemented by subclass.") - - def flags(self, index: QModelIndex): - """Return the flags of an item at the specified ModelIndex""" - if not index.isValid(): - return Qt.NoItemFlags - return index.internalPointer().flags() - - @staticmethod - def itemFromIndex(index: QModelIndex) -> AbstractTreeItem: - """Returns the object referenced by index""" - return index.internalPointer() - - @staticmethod - def columnCount(parent: QModelIndex = QModelIndex(), *args, **kwargs): - return 1 - - def headerData(self, section: int, orientation, role=Qt.DisplayRole): - """The Root item is responsible for first row header data""" - if orientation == Qt.Horizontal and role == Qt.DisplayRole: - return self._root.data(role) - return QVariant() - - def index(self, row: int, col: int, parent: QModelIndex = QModelIndex(), - *args, **kwargs) -> QModelIndex: - """Return a QModelIndex for the item at the given row and column, - with the specified parent.""" - if not self.hasIndex(row, col, parent): - return QModelIndex() - if not parent.isValid(): - parent_item = self._root - else: - parent_item = parent.internalPointer() # type: AbstractTreeItem - - child_item = parent_item.child(row) - # VITAL to compare is not None vs if child_item: - if child_item is not None: - return self.createIndex(row, col, child_item) - else: - return QModelIndex() - - def rowCount(self, parent: QModelIndex = QModelIndex(), *args, **kwargs): - # *args and **kwargs are necessary to suppress Qt Warnings - if parent.isValid(): - return parent.internalPointer().child_count() - return self._root.child_count() - - -class ComboEditDelegate(QStyledItemDelegate): - """Used by the Advanced Import Dialog to enable column selection/setting.""" - - def __init__(self, options=None, parent=None): - super().__init__(parent=parent) - self._options = options - - @property - def options(self): - return self._options - - @options.setter - def options(self, value): - self._options = list(value) - - def createEditor(self, parent: QWidget, option: QStyleOptionViewItem, - index: QModelIndex) -> QWidget: - """ - Create the Editor widget. The widget will be populated with data in - the setEditorData method, which is called by the view immediately - after creation of the editor. - - Parameters - ---------- - parent - option - index - - Returns - ------- - QWidget - - """ - editor = QComboBox(parent) - editor.setFrame(False) - return editor - - def setEditorData(self, editor: QWidget, index: QModelIndex) -> None: - """ - Sets the options in the supplied editor widget. This delegate class - expects a QComboBox widget, and will populate the combobox with - options supplied by the self.options property, or will construct them - from the current row if self.options is None. - - Parameters - ---------- - editor - index - - Returns - ------- - - """ - if not isinstance(editor, QComboBox): - print("Unexpected editor type.") - return - value = str(index.model().data(index, Qt.EditRole)) - if self.options is None: - # Construct set of choices by scanning columns at the current row - model = index.model() - row = index.row() - self.options = {model.data(model.index(row, c), Qt.EditRole) - for c in range(model.columnCount())} - - for choice in self.options: - editor.addItem(choice) - - index = editor.findText(value, flags=Qt.MatchExactly) - if editor.currentIndex() == index: - return - elif index == -1: - # -1 is returned by findText if text is not found - # In this case add the value to list of options in combobox - editor.addItem(value) - editor.setCurrentIndex(editor.count() - 1) - else: - editor.setCurrentIndex(index) - - def setModelData(self, editor: QComboBox, model: QAbstractItemModel, - index: QModelIndex) -> None: - value = str(editor.currentText()) - try: - model.setData(index, value, Qt.EditRole) - except: - _log.exception("Exception setting model data") - - def updateEditorGeometry(self, editor: QWidget, - option: QStyleOptionViewItem, - index: QModelIndex) -> None: - editor.setGeometry(option.rect) - - -class ChannelListTreeModel(BaseTreeModel): - """ - Tree type model for displaying/plotting data channels. - This model supports drag and drop internally. - - Attributes - ---------- - _plots : dict(int, ChannelListHeader) - Mapping of plot index to the associated Tree Item of type - ChannelListHeader - channels : dict(str, DataChannel) - Mapping of DataChannel UID to DataChannel - _default : ChannelListHeader - The default container for channels if they are not assigned to a plot - plotOverflow : pyqtSignal(str) - Signal emitted when drop operation would result in too many children, - ChannelListHeader.uid is passed. - channelChanged : pyqtSignal(int, DataChannel) - Signal emitted when DataChannel has been dropped to new parent/header - Emits index of new header, and the DataChannel that was changed. - - """ - - plotOverflow = pyqtSignal(str) # type: pyqtBoundSignal - channelChanged = pyqtSignal(int, DataChannel) # type: pyqtBoundSignal - - def __init__(self, channels: List[DataChannel], plots: int, parent=None): - super().__init__(BaseTreeItem(gen_uuid('base')), parent=parent) - self._plots = {} - for i in range(plots): - plt_header = ChannelListHeader(i, ctype='Plot', max_children=2) - self._plots[i] = plt_header - self.root.append_child(plt_header) - - self._default = ChannelListHeader() - self.root.append_child(self._default) - - self.channels = {} - self.add_channels(*channels) - - def move_channel(self, uid: str, dest_row: int): - """Used to programatically move a channel by uid to the header at - index: dest_row""" - channel = self.channels.get(uid, None) - if channel is None: - return False - - src_index = self.index(channel.parent.row(), 0) - self.beginRemoveRows(src_index, channel.row(), channel.row()) - channel.orphan() - self.endRemoveRows() - - if dest_row == -1: - dest = self._plots[0] - else: - dest = self._plots.get(dest_row, self._default) - - dest_idx = self.index(dest.row(), col=1) - - # Add channel to new parent/header - self.beginInsertRows(dest_idx, dest.row(), dest.row()) - dest.append_child(channel) - self.endInsertRows() - - self.channelChanged.emit(dest.index, channel) - self.update() - return True - - def add_channels(self, *channels): - """Build the model representation""" - for dc in channels: # type: DataChannel - self.channels[dc.uid] = dc - self._default.append_child(dc) - self.update() - - def remove_source(self, dsrc): - for channel in self.channels: # type: DataChannel - _log.debug("Orphaning and removing channel: {name}/{uid}".format( - name=channel.label, uid=channel.uid)) - if channel.source == dsrc: - self.channelChanged.emit(-1, channel) - channel.orphan() - try: - del self.channels[channel.uid] - except KeyError: - pass - self.update() - - def update(self) -> None: - """Update the models view layout.""" - self.layoutAboutToBeChanged.emit() - self.layoutChanged.emit() - - def data(self, index: QModelIndex, role=None): - item_data = index.internalPointer().data(role) - if item_data is None: - return QVariant() - return item_data - - def flags(self, index: QModelIndex): - item = index.internalPointer() - if item == self.root: - return Qt.NoItemFlags - if isinstance(item, DataChannel): - return (Qt.ItemIsDragEnabled | Qt.ItemIsSelectable | - Qt.ItemIsEnabled) - return (Qt.ItemIsSelectable | Qt.ItemIsEnabled | - Qt.ItemIsDropEnabled) - - def supportedDropActions(self): - return Qt.MoveAction - - def supportedDragActions(self): - return Qt.MoveAction - - def dropMimeData(self, data: QMimeData, action, row, col, - parent: QModelIndex) -> bool: - """ - Called by the Q*x*View when a Mime Data object is dropped within its - frame. - This model supports only the Qt.MoveAction, and will reject any others. - This method will check several properties before accepting/executing - the drop action. - - - Verify that action == Qt.MoveAction - - Ensure data.hasText() is True - - Lookup the channel referenced by data, ensure it exists - - Check that the destination (parent) will not exceed its max_child - limit if the drop is accepted. - - Also note that if a channel is somehow dropped to an invalid index, - it will simply be added back to the default container (Available - Channels) - - Parameters - ---------- - data : QMimeData - A QMimeData object containing text data with a DataChannel UID - action : Qt.DropActions - An Enum/Flag passed by the View. Must be of value Qt::MoveAction - row, col : int - Row and column of the parent that the data has been dropped on/in. - If row and col are both -1, the data has been dropped directly on - the parent. - parent : QModelIndex - The QModelIndex of the model item that the data has been dropped - in or on. - - Returns - ------- - result : bool - True on sucessful drop. - False if drop is rejected. - Failure may be due to the parent having too many children, - or the data did not have a properly encoded UID string, or the - UID could not be looked up in the model channels. - - """ - if action != Qt.MoveAction: - return False - if not data.hasText(): - return False - - dc = self.channels.get(data.text(), None) # type: DataChannel - if dc is None: - return False - - if not parent.isValid(): - # An invalid parent can be caused if an item is dropped between - # headers, as its parent is then the root object. In this case - # try to get the header it was dropped under from the _plots map. - # If we can get a valid ChannelListHeader, set destination to - # that, and recreate the parent QModelIndex to point refer to the - # new destination. - if row - 1 in self._plots: - destination = self._plots[row - 1] - parent = self.index(row - 1, 0) - else: - # Otherwise if the object was in the _default header, and is - # dropped in an invalid manner, don't remove and re-add it to - # the _default, just abort the move. - if dc.parent == self._default: - return False - destination = self._default - parent = self.index(self._default.row(), 0) - else: - destination = parent.internalPointer() - - if destination.max_children is not None and ( - destination.child_count() + 1 > destination.max_children): - self.plotOverflow.emit(destination.uid) - return False - - old_index = self.index(dc.parent.row(), 0) - # Remove channel from old parent/header - self.beginRemoveRows(old_index, dc.row(), dc.row()) - dc.orphan() - self.endRemoveRows() - - if row == -1: - row = 0 - # Add channel to new parent/header - self.beginInsertRows(parent, row, row) - destination.insert_child(dc, row) - self.endInsertRows() - - self.channelChanged.emit(destination.index, dc) - self.update() - return True - - def canDropMimeData(self, data: QMimeData, action, row, col, parent: - QModelIndex) -> bool: - """ - Queried when Mime data is dragged over/into the model. Returns - True if the data can be dropped. Does not guarantee that it will be - accepted. - - This method simply checks that the data has text within it. - - Returns - ------- - canDrop : bool - True if data can be dropped at the hover location. - False if the data cannot be dropped at the location. - """ - if data.hasText(): - return True - return False - - def mimeData(self, indexes) -> QMimeData: - """ - Create a QMimeData object for the item(s) specified by indexes. - - This model simply encodes the UID of the selected item (index 0 of - indexes - single selection only), into text/plain MIME object. - - Parameters - ---------- - indexes : list(QModelIndex) - List of QModelIndexes of the selected model items. - - Returns - ------- - QMimeData - text/plain QMimeData object, containing model item UID. - - """ - index = indexes[0] - item_uid = index.internalPointer().uid - data = QMimeData() - data.setText(item_uid) - return data diff --git a/dgp/gui/old_dialogs.py b/dgp/gui/old_dialogs.py deleted file mode 100644 index 0b7f5e6..0000000 --- a/dgp/gui/old_dialogs.py +++ /dev/null @@ -1,359 +0,0 @@ -# -*- coding: utf-8 -*- - -import types -import logging -from typing import Union - -import PyQt5.QtWidgets as QtWidgets -from PyQt5.QtCore import Qt, QPoint, QModelIndex - -from dgp.gui.models import TableModel, ComboEditDelegate - -from dgp.gui.ui import edit_import_view - -PATH_ERR = "Path cannot be empty." - - -class BaseDialog(QtWidgets.QDialog): # pragma: no cover - """ - BaseDialog is an attempt to standardize some common features in the - program dialogs. - Currently this class provides a standard logging interface - allowing the - programmer to send logging messages to a GUI receiver (any widget with a - setText method) via the self.log attribute - """ - - def __init__(self, msg_recvr: str = None, parent=None, flags=0): - super().__init__(parent=parent, flags=flags | Qt.Dialog) - self._log = logging.getLogger(self.__class__.__name__) - self._target = msg_recvr - - @property - def log(self): - return self._log - - @property - def msg_target(self) -> QtWidgets.QWidget: - """ - Raises - ------ - AttributeError: - Raised if target is invalid attribute of the UI class. - - Returns - ------- - QWidget - - """ - return self.__getattribute__(self._target) - - def color_label(self, lbl_txt, color='red'): - """ - Locate and highlight a label in this dialog, searching first by the - label attribute name, then by performing a slower text matching - iterative search through all objects in the dialog. - - Parameters - ---------- - lbl_txt - color - - """ - try: - lbl = self.__getattribute__(lbl_txt) - lbl.setStyleSheet('color: {}'.format(color)) - except AttributeError: - for k, v in self.__dict__.items(): - if not isinstance(v, QtWidgets.QLabel): - continue - if v.text() == lbl_txt: - v.setStyleSheet('color: {}'.format(color)) - - def show_message(self, message, buddy_label=None, log=None, hl_color='red', - color='black', target=None): - """ - Displays a message in the widgets msg_target widget (any widget that - supports setText()), as definied on initialization. - Optionally also send the message to the dialog's logger at specified - level, and highlights a buddy label a specified color, or red. - - Parameters - ---------- - message : str - Message to display in dialog msg_target Widget, or specified target - buddy_label : str, Optional - Specify a label containing *buddy_label* text that should be - highlighted in relation to this message. e.g. When warning user - that a TextEdit box has not been filled, pass the name of the - associated label to turn it red to draw attention. - log : int, Optional - Optional, log the supplied message to the logging provider at the - given logging level (int or logging module constant) - hl_color : str, Optional - Optional ovveride color to highlight buddy_label with, defaults red - color : str, Optional - Optional ovveride color to display message with - target : str, Optional - Send the message to the target specified here instead of any - target specified at class instantiation. - - """ - if log is not None: - self.log.log(level=log, msg=message) - - try: - if target is None: - target = self.msg_target - else: - target = self.__getattribute__(target) - except AttributeError: - self.log.error("No valid target available for show_message.") - return - - try: - target.setText(message) - target.setStyleSheet('color: {clr}'.format(clr=color)) - except AttributeError: - self.log.error("Invalid target for show_message, must support " - "setText attribute.") - - if buddy_label is not None: - self.color_label(buddy_label, color=hl_color) - - def show_error(self, message): - """Logs and displays error message in error dialog box""" - self.log.error(message) - dlg = QtWidgets.QMessageBox(parent=self) - dlg.setStandardButtons(QtWidgets.QMessageBox.Ok) - dlg.setText(message) - dlg.setIcon(QtWidgets.QMessageBox.Critical) - dlg.setWindowTitle("Error") - dlg.exec_() - - -# TODO: EditImportDialog and PropertiesDialog are deprecated - keeping them for example code currently - - -class EditImportDialog(BaseDialog, edit_import_view.Ui_Dialog): # pragma: no cover - """ - Take lines of data with corresponding fields and populate custom Table Model - Fields can be exchanged via a custom Selection Delegate, which provides a - drop-down combobox of available fields. - - Parameters - ---------- - formats : - An enumeration consisting of Enumerated items mapped to Field Tuples - i.e. field_enum.AT1A.value == ('Gravity', 'long', 'cross', ...) - edit_header : bool - Allow the header row to be edited if True. - Currently there seems to be no reason to permit editing of gravity - data files as they are expected to be very uniform. However this is - useful with GPS data files where we have seen some columns switched - or missing. - parent : - Parent Widget to this Dialog - - """ - - def __init__(self, formats, edit_header=False, parent=None): - flags = Qt.Dialog - - super().__init__('label_msg', parent=parent, flags=flags) - self.setupUi(self) - self._base_h = self.height() - self._base_w = self.width() - - # Configure the QTableView - self._view = self.table_col_edit # type: QtWidgets.QTableView - self._view.setContextMenuPolicy(Qt.CustomContextMenu) - if edit_header: - self._view.customContextMenuRequested.connect(self._context_menu) - self._view.setItemDelegate(ComboEditDelegate()) - - for item in formats: - name = str(item.name).upper() - self.cb_format.addItem(name, item) - - model = TableModel(self.format.value, editable_header=edit_header) - self._view.setModel(model) - - self.cb_format.currentIndexChanged.connect(lambda: self._set_header()) - self.btn_reset.clicked.connect(lambda: self._set_header()) - - def exec_(self): - self._autofit() - return super().exec_() - - def _set_header(self): - """pyQt Slot: - Set the TableModel header row values to the current data_format values - """ - self.model.table_header = self.format.value - self._autofit() - - def _autofit(self): - """Adjust dialog height/width based on table view contents""" - self._view.resizeColumnsToContents() - dl_width = self._base_w - for col in range(self.model.columnCount()): - dl_width += self._view.columnWidth(col) - - dl_height = self._base_h - for row in range(self.model.rowCount()): - dl_height += self._view.rowHeight(row) - if row >= 5: - break - self.resize(dl_width, dl_height) - - @property - def data(self): - return self.model.model_data - - @data.setter - def data(self, value): - self.model.model_data = value - - @property - def columns(self): - # TODO: This is still problematic, what happens if a None column is - # in the middle of the data set? Cols will be skewed. - return [col for col in self.model.table_header if col != 'None'] - - @property - def cb_format(self) -> QtWidgets.QComboBox: - return self.cob_field_set - - @property - def format(self): - return self.cb_format.currentData() - - @format.setter - def format(self, value): - if isinstance(value, str): - idx = self.cb_format.findText(value) - else: - idx = self.cb_format.findData(value) - if idx == -1: - self.cb_format.setCurrentIndex(0) - else: - self.cb_format.setCurrentIndex(idx) - - @property - def model(self) -> TableModel: - return self._view.model() - - @property - def skiprow(self) -> Union[int, None]: - """Returns value of UI's 'Has Header' CheckBox to determine if first - row should be skipped (Header already defined in data). - """ - if self.chb_has_header.isChecked(): - return 1 - return None - - @skiprow.setter - def skiprow(self, value: bool): - self.chb_has_header.setChecked(bool(value)) - - def _context_menu(self, point: QPoint): - row = self._view.rowAt(point.y()) - col = self._view.columnAt(point.x()) - index = self.model.index(row, col) - if -1 < col < self._view.model().columnCount() and row == 0: - menu = QtWidgets.QMenu() - action = QtWidgets.QAction("Custom Value") - action.triggered.connect(lambda: self._custom_label(index)) - - menu.addAction(action) - menu.exec_(self._view.mapToGlobal(point)) - - def _custom_label(self, index: QModelIndex): - # For some reason QInputDialog.getText does not recognize some kwargs - cur_val = index.data(role=Qt.DisplayRole) - text, ok = QtWidgets.QInputDialog.getText(self, - "Input Value", - "Input Custom Value", - text=cur_val) - if ok: - self.model.setData(index, text.strip()) - return - - -class PropertiesDialog(BaseDialog): # pragma: no cover - def __init__(self, cls, parent=None): - super().__init__(parent=parent) - # Store label: data as dictionary - self._data = dict() - self.setWindowTitle('Properties') - - vlayout = QtWidgets.QVBoxLayout() - try: - name = cls.__getattribute__('name') - except AttributeError: - name = '' - - self._title = QtWidgets.QLabel('

{cls}: {name}

'.format( - cls=cls.__class__.__name__, name=name)) - self._title.setAlignment(Qt.AlignHCenter) - self._form = QtWidgets.QFormLayout() - - self._btns = QtWidgets.QDialogButtonBox(QtWidgets.QDialogButtonBox.Ok) - self._btns.accepted.connect(self.accept) - - vlayout.addWidget(self._title, alignment=Qt.AlignTop) - vlayout.addLayout(self._form) - vlayout.addWidget(self._btns, alignment=Qt.AlignBottom) - - self.setLayout(vlayout) - - self.log.info("Properties Dialog Initialized") - if cls is not None: - self.populate_form(cls) - self.show() - - @property - def data(self): - return None - - @property - def form(self) -> QtWidgets.QFormLayout: - return self._form - - @staticmethod - def _is_abstract(obj): - if hasattr(obj, '__isabstractmethod__') and obj.__isabstractmethod__: - return True - return False - - def _build_widget(self, value): - if value is None: - return QtWidgets.QLabel('None') - if isinstance(value, str): - return QtWidgets.QLabel(value) - elif isinstance(value, (list, types.GeneratorType)): - rv = QtWidgets.QVBoxLayout() - for i, item in enumerate(value): - if i >= 5: - rv.addWidget(QtWidgets.QLabel("{} More Items...".format( - len(value) - 5))) - break - # rv.addWidget(QtWidgets.QLabel(str(item))) - rv.addWidget(self._build_widget(item)) - return rv - elif isinstance(value, dict): - rv = QtWidgets.QFormLayout() - for key, val in value.items(): - rv.addRow(str(key), self._build_widget(val)) - return rv - - else: - return QtWidgets.QLabel(repr(value)) - - def populate_form(self, instance): - for cls in instance.__class__.__mro__: - for binding, attr in cls.__dict__.items(): - if not self._is_abstract(attr) and isinstance(attr, property): - value = instance.__getattribute__(binding) - lbl = "

{}:

".format(str(binding).capitalize()) - self.form.addRow(lbl, self._build_widget(value)) diff --git a/dgp/gui/plotting/plotters.py b/dgp/gui/plotting/plotters.py index 678c45b..3f06a77 100644 --- a/dgp/gui/plotting/plotters.py +++ b/dgp/gui/plotting/plotters.py @@ -13,7 +13,7 @@ from pyqtgraph import PlotItem from dgp.core.oid import OID -from dgp.lib.types import LineUpdate +from core.types.tuples import LineUpdate from .helpers import LinearFlightRegion from .backends import PyQtGridPlotWidget diff --git a/dgp/core/views/ProjectTreeView.py b/dgp/gui/views/ProjectTreeView.py similarity index 91% rename from dgp/core/views/ProjectTreeView.py rename to dgp/gui/views/ProjectTreeView.py index 4cce1b7..5b1ba78 100644 --- a/dgp/core/views/ProjectTreeView.py +++ b/dgp/gui/views/ProjectTreeView.py @@ -6,15 +6,13 @@ from PyQt5.QtGui import QContextMenuEvent, QStandardItem from PyQt5.QtWidgets import QTreeView, QMenu -from dgp.core.controllers.flight_controller import FlightController -from dgp.core.controllers.project_controllers import AirborneProjectController -from dgp.core.models.ProjectTreeModel import ProjectTreeModel +from dgp.core.controllers.controller_interfaces import IFlightController, IAirborneController +from core.controllers.project_treemodel import ProjectTreeModel class ProjectTreeView(QTreeView): def __init__(self, parent: Optional[QObject]=None): super().__init__(parent=parent) - print("Initializing ProjectTreeView") self.setMinimumSize(QtCore.QSize(0, 300)) self.setAlternatingRowColors(False) self.setAutoExpandDelay(1) @@ -48,7 +46,7 @@ def setModel(self, model: ProjectTreeModel): def _on_double_click(self, index: QModelIndex): """Selectively expand/collapse an item depending on its active state""" item = self.model().itemFromIndex(index) - if isinstance(item, FlightController): + if isinstance(item, IFlightController): if item.is_active(): self.setExpanded(index, not self.isExpanded(index)) else: @@ -90,7 +88,7 @@ def contextMenuEvent(self, event: QContextMenuEvent, *args, **kwargs): # pprint(ancestor_bindings) # bindings.extend(ancestor_bindings) - if isinstance(item, AirborneProjectController): + if isinstance(item, IAirborneController): bindings.insert(0, ('addAction', ("Expand All", self.expandAll))) bindings.append(('addAction', ("Expand" if not expanded else "Collapse", diff --git a/dgp/core/views/__init__.py b/dgp/gui/views/__init__.py similarity index 100% rename from dgp/core/views/__init__.py rename to dgp/gui/views/__init__.py diff --git a/dgp/lib/types.py b/dgp/lib/types.py deleted file mode 100644 index d46279d..0000000 --- a/dgp/lib/types.py +++ /dev/null @@ -1,489 +0,0 @@ -# -*- coding: utf-8 -*- - -import logging -from abc import ABCMeta, abstractmethod -from collections import namedtuple -from typing import Union, Generator, List, Iterable - -from pandas import Series, DataFrame -from PyQt5.QtCore import Qt - -from dgp.lib.etc import gen_uuid -from core.types import enumerations - -""" -Dynamic Gravity Processor (DGP) :: lib/types.py -License: Apache License V2 - -Overview: -types.py is a library utility module used to define custom reusable types for -use in other areas of the project. - -The TreeItem and AbstractTreeItem classes are designed to be subclassed by -items for display in a QTreeView widget. The classes themselves are Qt -agnostic, meaning they can be safely pickled, and there is no dependence on -any Qt modules. -""" -_log = logging.getLogger(__name__) - -Location = namedtuple('Location', ['lat', 'long', 'alt']) - -StillReading = namedtuple('StillReading', ['gravity', 'location', 'time']) - -DataCurve = namedtuple('DataCurve', ['channel', 'data']) - -LineUpdate = namedtuple('LineUpdate', ['action', 'uid', 'start', - 'stop', 'label']) - - -class AbstractTreeItem(metaclass=ABCMeta): - """ - AbstractTreeItem provides the interface definition for an object that can - be utilized within a heirarchial or tree model. - This AbstractBaseClass (ABC) defines the function signatures required by - a Tree Model implementation in QT/PyQT. - AbstractTreeItem is also utilized to enforce some level of type safety by - providing model consumers a simple way to perform type checking on - instances inherited from this class. - """ - - @property - @abstractmethod - def uid(self): - pass - - @property - @abstractmethod - def parent(self): - pass - - @parent.setter - @abstractmethod - def parent(self, value): - pass - - @property - @abstractmethod - def children(self) -> Iterable['AbstractTreeItem']: - pass - - @abstractmethod - def data(self, role): - pass - - @abstractmethod - def child(self, index): - pass - - @abstractmethod - def append_child(self, child): - pass - - @abstractmethod - def remove_child(self, child): - pass - - @abstractmethod - def child_count(self): - pass - - @abstractmethod - def column_count(self): - pass - - @abstractmethod - def indexof(self, child): - pass - - @abstractmethod - def row(self): - pass - - @abstractmethod - def flags(self): - pass - - @abstractmethod - def update(self, **kwargs): - pass - - -class BaseTreeItem(AbstractTreeItem): - """ - Define a lightweight bare-minimum implementation of the - AbstractTreeItem to ease futher specialization in subclasses. - """ - def __init__(self, uid, parent: AbstractTreeItem=None): - self._uid = uid or gen_uuid('bti') - self._parent = parent - self._children = [] - # self._child_map = {} # Used for fast lookup by UID - if parent is not None: - parent.append_child(self) - - @property - def uid(self) -> str: - """Returns the unique identifier of this object.""" - return self._uid - - @property - def parent(self) -> Union[AbstractTreeItem, None]: - """Returns the parent of this object.""" - return self._parent - - @parent.setter - def parent(self, value: AbstractTreeItem): - """Sets the parent of this object.""" - if value is None: - self._parent = None - return - assert isinstance(value, AbstractTreeItem) - self._parent = value - # self.update() - - @property - def children(self) -> Generator[AbstractTreeItem, None, None]: - """Generator property, yields children of this object.""" - for child in self._children: - yield child - - def data(self, role): - raise NotImplementedError("data(role) must be implemented in subclass.") - - def child(self, index: int) -> AbstractTreeItem: - return self._children[index] - - def get_child(self, uid: str) -> 'BaseTreeItem': - """Get a child by UID reference.""" - for child in self._children: - if child.uid == uid: - return child - else: - raise KeyError("Child UID does not exist.") - - def append_child(self, child: AbstractTreeItem) -> str: - """ - Appends a child AbstractTreeItem to this object. An object that is - not an instance of AbstractTreeItem will be rejected and an Assertion - Error will be raised. - Likewise if a child already exists within this object, it will - silently continue without duplicating the child. - - Parameters - ---------- - child: AbstractTreeItem - Child AbstractTreeItem to append to this object. - - Returns - ------- - str: - UID of appended child - - Raises - ------ - AssertionError: - If child is not an instance of AbstractTreeItem, an Assertion - Error is raised, and the child will not be appended to this object. - """ - assert isinstance(child, BaseTreeItem) - if child in self._children: - # Appending same child should have no effect - return child.uid - child.parent = self - self._children.append(child) - self.update() - return child.uid - - def remove_child(self, child: AbstractTreeItem): - if child not in self._children: - return False - child.parent = None - self._children.remove(child) - self.update() - return True - - def insert_child(self, child: AbstractTreeItem, index: int) -> bool: - if index == -1: - self.append_child(child) - return True - try: - self._children.insert(index, child) - child.parent = self - except IndexError: - return False - self.update() - return True - - def child_count(self): - """Return number of children belonging to this object""" - return len(self._children) - - def column_count(self): - """Default column count is 1, and the current models expect a single - column Tree structure.""" - return 1 - - def indexof(self, child) -> int: - """Return the index of a child contained in this object""" - try: - return self._children.index(child) - except ValueError: - _log.exception("Invalid child passed to indexof.") - return -1 - - def row(self) -> Union[int, None]: - """Return the row index of this TreeItem relative to its parent""" - if self._parent: - return self._parent.indexof(self) - return 0 - - def flags(self) -> int: - """Returns default flags for Tree Items, override this to enable - custom behavior in the model.""" - return Qt.ItemIsSelectable | Qt.ItemIsEnabled - - def update(self, **kwargs): - """Propogate update up to the parent that decides to catch it""" - if self.parent is not None: - self.parent.update(**kwargs) - - -_style_roles = {Qt.BackgroundRole: 'bg', - Qt.ForegroundRole: 'fg', - Qt.DecorationRole: 'icon', - Qt.FontRole: 'font'} - - -class TreeItem(BaseTreeItem): - """ - TreeItem extends BaseTreeItem and adds some extra convenience methods - (__str__, __len__, __iter__, __getitem__, __contains__), as well as - defining a default data() method which can apply styles set via the style - property in this class. - """ - - def __init__(self, uid: str, parent: AbstractTreeItem=None): - super().__init__(uid, parent) - self._style = {} - - def __str__(self): - return "".format(self.uid) - - def __len__(self): - return self.child_count() - - def __iter__(self): - for child in self.children: - yield child - - def __getitem__(self, key: Union[int, str]): - """Permit child access by ordered index, or UID""" - if not isinstance(key, (int, str)): - raise ValueError("Key must be int or str type") - if isinstance(key, str): - return self.get_child(key) - return self.child(key) - - def __contains__(self, item: AbstractTreeItem): - return item in self.children - - @property - def style(self): - return self._style - - @style.setter - def style(self, value): - self._style = value - - def data(self, role): - """ - Return contextual data based on supplied role. - If a role is not defined or handled by descendents they should return - None, and the model should be take this into account. - TreeType provides a basic default implementation, which will also - handle common style parameters. Descendant classes should provide - their own definition to override specific roles, and then call the - base data() implementation to handle style application. e.g. - >>> def data(self, role): - >>> if role == Qt.DisplayRole: - >>> return "Custom Display: " + self.name - >>> # Allow base class to apply styles if role not caught above - >>> return super().data(role) - """ - if role == Qt.DisplayRole: - return str(self) - if role == Qt.ToolTipRole: - return self.uid - # Allow style specification by QtDataRole or by name e.g. 'bg', 'fg' - if role in self._style: - return self._style[role] - if role in _style_roles: - key = _style_roles[role] - return self._style.get(key, None) - return None - - -class ChannelListHeader(BaseTreeItem): - """ - A simple Tree Item with a label, to be used as a header/label. This - TreeItem accepts children. - """ - def __init__(self, index: int=-1, ctype='Available', supports_drop=True, - max_children=None, parent=None): - super().__init__(uid=gen_uuid('clh_'), parent=parent) - self.label = '{ctype} #{index}'.format(ctype=ctype, index=index) - self.index = index - self._supports_drop = supports_drop - self.max_children = max_children - - @property - def droppable(self): - if not self._supports_drop: - return False - if self.max_children is None: - return True - if self.child_count() >= self.max_children: - return False - return True - - def data(self, role): - if role == Qt.DisplayRole: - return self.label - return None - - def remove_child(self, child: Union[AbstractTreeItem, str]): - super().remove_child(child) - - -class FlightLine(TreeItem): - """ - Simple TreeItem to represent a Flight Line selection, storing a start - and stop index, as well as the reference to the data it relates to. - This TreeItem does not accept children. - """ - def __init__(self, start, stop, sequence=None, file_ref=None, uid=None, - parent=None): - super().__init__(uid, parent) - - self._start = start - self._stop = stop - self._file = file_ref # UUID of source file for this line - self._sequence = sequence - self._label = None - - @property - def label(self): - return self._label - - @label.setter - def label(self, value): - self._label = value - self.update() - - @property - def start(self): - return self._start - - @start.setter - def start(self, value): - self._start = value - self.update() - - @property - def stop(self): - return self._stop - - @stop.setter - def stop(self, value): - self._stop = value - self.update() - - @property - def sequence(self) -> int: - return self._sequence - - @sequence.setter - def sequence(self, value: int): - self._sequence = value - - def update_line(self, start=None, stop=None, label=None): - """Allow update to one or more line properties while only triggering UI - update once.""" - # TODO: Testing - self._start = start or self._start - self._stop = stop or self._stop - self._label = label or self._label - self.update() - - def data(self, role): - if role == Qt.DisplayRole: - if self.label: - return "Line {lbl} {start} :: {end}".format(lbl=self.label, - start=self.start, - end=self.stop) - return str(self) - if role == Qt.ToolTipRole: - return "Line UID: " + self.uid - return super().data(role) - - def append_child(self, child: AbstractTreeItem): - """Override base to disallow adding of children.""" - raise ValueError("FlightLine does not accept children.") - - def __str__(self): - if self.label: - name = self.label - else: - name = 'Line' - return '{name} {start:%H:%M:%S} -> {stop:%H:%M:%S}'.format( - name=name, start=self.start, stop=self.stop) - - -class DataChannel(BaseTreeItem): - def __init__(self, label, source, parent=None): - super().__init__(gen_uuid('dcn'), parent=parent) - self.label = label - self.field = label - self.source = source - self.plot_style = '' - self.units = '' - - def series(self, force=False) -> Series: - """Return the pandas Series referenced by this DataChannel - Parameters - ---------- - force : bool, optional - Reserved for future use, force the DataManager to reload the - Series from disk. - """ - return self.source.load(self.field) - - def get_xlim(self): - return self.source.get_xlim() - - def data(self, role): - if role == Qt.DisplayRole: - return self.label - if role == Qt.UserRole: - return self.field - if role == Qt.ToolTipRole: - return self.source.filename - return None - - def flags(self): - return super().flags() | Qt.ItemIsDragEnabled | \ - Qt.ItemIsDropEnabled - - def orphan(self): - """Remove the current object from its parents' list of children.""" - if self.parent is None: - return True - try: - parent = self.parent - res = parent.remove_child(self) - return res - except ValueError: - return False - except: - _log.exception("Unexpected error while orphaning child.") - return False From 864107c5d9c652f7dda8909ba6a4485aa1ec30b9 Mon Sep 17 00:00:00 2001 From: Zachery Brady Date: Fri, 6 Jul 2018 10:06:42 -0600 Subject: [PATCH 135/236] GUI Updates, add new widgets and utilities. Add new ChannelSelectWidget - a QListView with context menu to allow plotting of selected channel on specific plots. Update main window design, load SplashScreen from precompiled .ui file instead of using loadUiType Misc fixes and documentation updates in docstrings. --- dgp/core/controllers/controller_bases.py | 17 ++ dgp/core/controllers/controller_interfaces.py | 13 +- dgp/core/controllers/controller_mixins.py | 67 +++++-- dgp/core/controllers/datafile_controller.py | 50 ++--- dgp/core/controllers/dataset_controller.py | 184 ++++++++++++++++++ dgp/core/controllers/flight_controller.py | 136 ++++--------- dgp/core/controllers/flightline_controller.py | 9 +- dgp/core/controllers/gravimeter_controller.py | 2 +- dgp/core/controllers/hdf5_controller.py | 174 ----------------- dgp/core/controllers/project_controllers.py | 77 +++++--- dgp/core/hdf5_manager.py | 159 +++++++++++++++ dgp/core/models/data.py | 2 + dgp/core/models/dataset.py | 131 +++++++++++++ dgp/core/models/flight.py | 10 +- dgp/core/models/project.py | 30 ++- dgp/gui/dialogs/custom_validators.py | 8 + dgp/gui/dialogs/data_import_dialog.py | 18 +- dgp/gui/dialogs/project_properties_dialog.py | 82 ++++++++ dgp/gui/main.py | 12 +- dgp/gui/plotting/backends.py | 12 +- dgp/gui/plotting/plotters.py | 8 +- dgp/gui/splash.py | 8 +- dgp/gui/ui/data_import_dialog.ui | 58 ++++-- dgp/gui/ui/main_window.ui | 50 ++++- ...dialog.ui => project_properties_dialog.ui} | 71 +++---- dgp/gui/ui/transform_tab_widget.ui | 45 +++-- dgp/gui/utils.py | 14 +- dgp/gui/widgets/__init__.py | 0 dgp/gui/widgets/channel_select_widget.py | 123 ++++++++++++ dgp/gui/workspace.py | 2 +- dgp/gui/workspaces/BaseTab.py | 5 +- dgp/gui/workspaces/PlotTab.py | 81 +++----- examples/treemodel_integration_test.py | 101 ++++++---- examples/treeview.ui | 42 +++- tests/test_datastore.py | 44 ++--- tests/test_gui_utils.py | 16 ++ tests/test_project_controllers.py | 129 +++++++----- tests/test_project_models.py | 31 ++- 38 files changed, 1362 insertions(+), 659 deletions(-) create mode 100644 dgp/core/controllers/controller_bases.py create mode 100644 dgp/core/controllers/dataset_controller.py delete mode 100644 dgp/core/controllers/hdf5_controller.py create mode 100644 dgp/core/hdf5_manager.py create mode 100644 dgp/core/models/dataset.py create mode 100644 dgp/gui/dialogs/project_properties_dialog.py rename dgp/gui/ui/{properties_dialog.ui => project_properties_dialog.ui} (57%) create mode 100644 dgp/gui/widgets/__init__.py create mode 100644 dgp/gui/widgets/channel_select_widget.py create mode 100644 tests/test_gui_utils.py diff --git a/dgp/core/controllers/controller_bases.py b/dgp/core/controllers/controller_bases.py new file mode 100644 index 0000000..2279c01 --- /dev/null +++ b/dgp/core/controllers/controller_bases.py @@ -0,0 +1,17 @@ +# -*- coding: utf-8 -*- +from core.oid import OID +from dgp.core.controllers.controller_interfaces import IBaseController + + +class BaseController(IBaseController): + def __init__(self, parent=None): + super().__init__() + + @property + def uid(self) -> OID: + raise NotImplementedError + + @property + def datamodel(self) -> object: + raise NotImplementedError + diff --git a/dgp/core/controllers/controller_interfaces.py b/dgp/core/controllers/controller_interfaces.py index 156c16a..bfbb4b6 100644 --- a/dgp/core/controllers/controller_interfaces.py +++ b/dgp/core/controllers/controller_interfaces.py @@ -47,7 +47,7 @@ def add_child(self, child) -> 'IBaseController': """ raise NotImplementedError - def remove_child(self, child, row: int) -> None: + def remove_child(self, child, row: int, confirm: bool = True) -> None: raise NotImplementedError def get_child(self, uid: Union[str, OID]) -> IChild: @@ -102,15 +102,20 @@ def get_active_child(self): class IFlightController(IBaseController, IParent, IChild): - def load_data(self, datafile) -> DataFrame: - raise NotImplementedError - def set_active_child(self, child, emit: bool = True): raise NotImplementedError def get_active_child(self): raise NotImplementedError + @property + def hdf5path(self) -> Path: + raise NotImplementedError + class IMeterController(IBaseController, IChild): pass + + +class IDataSetController(IBaseController, IChild): + pass diff --git a/dgp/core/controllers/controller_mixins.py b/dgp/core/controllers/controller_mixins.py index 5999ee1..5e62b1b 100644 --- a/dgp/core/controllers/controller_mixins.py +++ b/dgp/core/controllers/controller_mixins.py @@ -1,16 +1,20 @@ # -*- coding: utf-8 -*- -from typing import Any +from typing import Any, Union + +from PyQt5.QtGui import QValidator class AttributeProxy: """ - This mixin class provides an interface to selectively allow getattr calls against the - proxied or underlying object in a wrapper class. getattr returns successfully only - for attributes decorated with @property in the proxied instance. + This mixin class provides an interface to selectively allow getattr calls + against the proxied or underlying object in a wrapper class. getattr + returns successfully only for attributes decorated with @property in the + proxied instance. """ @property - def proxied(self) -> object: + def datamodel(self) -> object: + """Return the underlying model of the proxy class.""" raise NotImplementedError def update(self): @@ -20,14 +24,51 @@ def update(self): pass def get_attr(self, key: str) -> Any: - if hasattr(self.proxied, key): - return getattr(self.proxied, key) + if hasattr(self.datamodel, key): + return getattr(self.datamodel, key) else: - raise AttributeError("Object {!r} has no attribute {}".format(self.proxied, key)) + raise AttributeError("Object {!r} has no attribute {}".format(self.datamodel, key)) def set_attr(self, key: str, value: Any): - if hasattr(self.proxied, key): - setattr(self.proxied, key, value) - self.update() - else: - raise AttributeError("Object {!r} has no attribute {}".format(self.proxied, key)) + if not hasattr(self.datamodel, key): + raise AttributeError("Object {!r} has no attribute {}".format(self.datamodel, key)) + if not self.writeable(key): + raise AttributeError("Attribute [{}] is not writeable".format(key)) + + validator = self.validator(key) + if validator is not None: + valid = validator.validate(value, 0)[0] + if not valid == QValidator.Acceptable: + raise ValueError("Value does not pass validation") + + setattr(self.datamodel, key, value) + self.update() + + def writeable(self, key: str) -> bool: + """Get the write status for a specified proxied attribute key. + + Override this method to implement write-protection on proxied attributes. + + Parameters + ---------- + key : str + The attribute key to retrieve write status of + + Returns + ------- + bool + True if attribute is writeable + False if attribute is write-protected (set_attr calls will fail) + + """ + return True + + def validator(self, key: str) -> Union[QValidator, None]: + """Get the QValidator class for a specified proxied attribute key. + + Override this method to implement write-validation on attributes. + + This method should return a QValidator subtype for the specified + key, or None if no validation should occur. + """ + return None diff --git a/dgp/core/controllers/datafile_controller.py b/dgp/core/controllers/datafile_controller.py index 96f72b1..06e2e95 100644 --- a/dgp/core/controllers/datafile_controller.py +++ b/dgp/core/controllers/datafile_controller.py @@ -14,25 +14,26 @@ class DataFileController(QStandardItem, AttributeProxy): - def __init__(self, datafile: DataFile, controller: IFlightController): + def __init__(self, datafile: DataFile, dataset=None): super().__init__() self._datafile = datafile - self._flight_ctrl = controller # type: IFlightController + self._dataset = dataset # type: DataSetController self.log = logging.getLogger(__name__) - self.setText(self._datafile.label) - self.setToolTip("Source Path: " + str(self._datafile.source_path)) - self.setData(self._datafile, role=Qt.UserRole) - if self._datafile.group == 'gravity': - self.setIcon(QIcon(GRAV_ICON)) - elif self._datafile.group == 'trajectory': - self.setIcon(QIcon(GPS_ICON)) + if datafile is not None: + self.setText(self._datafile.label) + self.setToolTip("Source Path: " + str(self._datafile.source_path)) + self.setData(self._datafile, role=Qt.UserRole) + if self._datafile.group == 'gravity': + self.setIcon(QIcon(GRAV_ICON)) + elif self._datafile.group == 'trajectory': + self.setIcon(QIcon(GPS_ICON)) + else: + self.setText("No Data") self._bindings = [ - ('addAction', ('Set Active', self._activate)), ('addAction', ('Describe', self._describe)), - ('addAction', ('Delete <%s>' % self._datafile, - lambda: self.flight.remove_child(self._datafile, self.row()))) + ('addAction', ('Delete <%s>' % self._datafile, lambda: None)) ] @property @@ -40,8 +41,8 @@ def uid(self) -> OID: return self._datafile.uid @property - def flight(self) -> IFlightController: - return self._flight_ctrl + def dataset(self) -> 'DataSetController': + return self._dataset @property def menu_bindings(self): @@ -52,24 +53,11 @@ def data_group(self): return self._datafile.group @property - def proxied(self) -> object: + def datamodel(self) -> object: return self._datafile - def _activate(self): - self.flight.set_active_child(self) - def _describe(self): - df = self.flight.load_data(self) - self.log.debug(df.describe()) - - def set_active(self): - self.setBackground(QBrush(QColor("#85acea"))) - - def set_inactive(self): - self.setBackground(QBrush(QColor("white"))) + pass + # df = self.flight.load_data(self) + # self.log.debug(df.describe()) - def get_data(self): - try: - return self.flight.load_data(self) - except IOError: - return None diff --git a/dgp/core/controllers/dataset_controller.py b/dgp/core/controllers/dataset_controller.py new file mode 100644 index 0000000..b02b6ed --- /dev/null +++ b/dgp/core/controllers/dataset_controller.py @@ -0,0 +1,184 @@ +# -*- coding: utf-8 -*- +import functools +import logging +from PyQt5.QtGui import QColor, QBrush, QIcon, QStandardItemModel +from pandas import DataFrame + +from core.hdf5_manager import HDF5Manager +from dgp.core.controllers.project_containers import ProjectFolder +from dgp.core.file_loader import FileLoader +from dgp.core.models.data import DataFile +from dgp.core.types.enumerations import DataTypes +from dgp.core.oid import OID +from dgp.core.controllers.controller_interfaces import (IFlightController, + IDataSetController) +from dgp.core.controllers.datafile_controller import DataFileController +from dgp.core.controllers.controller_bases import BaseController +from dgp.core.models.dataset import DataSet, DataSegment +from dgp.gui.dialogs.data_import_dialog import DataImportDialog +from dgp.lib.gravity_ingestor import read_at1a +from dgp.lib.trajectory_ingestor import import_trajectory + + +class DataSegmentController(BaseController): + def __init__(self, segment: DataSegment): + super().__init__() + self._segment = segment + self.setText(str(self._segment)) + + @property + def uid(self) -> OID: + return self._segment.uid + + @property + def datamodel(self) -> object: + return self._segment + + def update(self): + self.setText(str(self._segment)) + + +class DataSetController(IDataSetController): + def __init__(self, dataset: DataSet, flight: IFlightController, + name: str = ""): + super().__init__() + self._dataset = dataset + self._flight = flight + self._name = name + + self.setText("DataSet") + self.setIcon(QIcon(":icons/folder_open.png")) + self._grav_file = DataFileController(self._dataset.gravity) + self._traj_file = DataFileController(self._dataset.gravity) + self._segments = ProjectFolder("Segments") + self.appendRow(self._grav_file) + self.appendRow(self._traj_file) + self.appendRow(self._segments) + + self._channel_model = QStandardItemModel() + + self._menu_bindings = [ + ('addAction', ('Set Name', lambda: None)), + ('addAction', ('Set Active', lambda: None)), + ('addAction', ('Add Segment', lambda: None)), + ('addAction', ('Import Gravity', lambda: None)), + ('addAction', ('Import Trajectory', lambda: None)), + ('addAction', ('Delete', lambda: None)), + ('addAction', ('Properties', lambda: None)) + ] + + @property + def uid(self) -> OID: + return self._dataset.uid + + @property + def menu_bindings(self): + return self._menu_bindings + + @property + def datamodel(self) -> DataSet: + return self._dataset + + @property + def channel_model(self) -> QStandardItemModel: + return self._channel_model + + def get_parent(self) -> IFlightController: + return self._flight + + def set_parent(self, parent: IFlightController) -> None: + self._flight = parent + + def add_segment(self, uid: OID, start: float, stop: float, label: str = ""): + print("Adding data segment {!s}".format(uid)) + segment = DataSegment(uid, start, stop, self._segments.rowCount(), label) + seg_ctrl = DataSegmentController(segment) + # TODO: Need DataSegmentController + self._dataset.add_segment(segment) + self._segments.appendRow(seg_ctrl) + + def get_segment(self, uid: OID) -> DataSegmentController: + for segment in self._segments.items(): + if segment.uid == uid: + return segment + + def update_segment(self, uid: OID, start: float, stop: float, + label: str = ""): + segment = self.get_segment(uid) + + # TODO: Get the controller from the ProjectFolder instance instead + if segment is None: + raise KeyError("Invalid UID, DataSegment does not exist.") + + segment.set_attr('start', start) + segment.set_attr('stop', stop) + segment.set_attr('label', label) + + def remove_segment(self, uid: OID): + segment = self.get_segment(uid) + if segment is None: + print("NO matching segment found to remove") + return + + self._segments.removeRow(segment.row()) + + def set_active(self, active: bool = True) -> None: + self._dataset.set_active(active) + if active: + self.setBackground(QBrush(QColor("#85acea"))) + else: + self.setBackground(QBrush(QColor("white"))) + + def _add_datafile(self, datafile: DataFile, data: DataFrame): + # TODO: Refactor + HDF5Manager.save_data(data, datafile, '') # TODO: Get prj HDF Path + if datafile.group == 'gravity': + self.removeRow(self._grav_file.row()) + dfc = DataFileController(datafile, dataset=self.datamodel) + self._grav_file = dfc + self.appendRow(dfc) + + elif datafile.group == 'trajectory': + pass + else: + raise TypeError("Invalid data group") + + def load_file_dlg(self, datatype: DataTypes = DataTypes.GRAVITY, + destination: IFlightController = None): # pragma: no cover + """ + Launch a Data Import dialog to load a Trajectory/Gravity data file into + a dataset. + + Parameters + ---------- + datatype + destination + + Returns + ------- + + """ + parent = self.model().parent() + + def load_data(datafile: DataFile, params: dict): + if datafile.group == 'gravity': + method = read_at1a + elif datafile.group == 'trajectory': + method = import_trajectory + else: + print("Unrecognized data group: " + datafile.group) + return + loader = FileLoader(datafile.source_path, method, parent=parent, + **params) + loader.completed.connect(functools.partial(self._add_datafile, + datafile)) + # TODO: Connect completed to add_child method of the flight + loader.start() + + dlg = DataImportDialog(self, datatype, parent=parent) + if destination is not None: + dlg.set_initial_flight(destination) + dlg.load.connect(load_data) + dlg.exec_() + + diff --git a/dgp/core/controllers/flight_controller.py b/dgp/core/controllers/flight_controller.py index 7ad215f..0228dd1 100644 --- a/dgp/core/controllers/flight_controller.py +++ b/dgp/core/controllers/flight_controller.py @@ -1,18 +1,21 @@ # -*- coding: utf-8 -*- import itertools import logging +from pathlib import Path from typing import Optional, Union, Any, Generator from PyQt5.QtCore import Qt from PyQt5.QtGui import QStandardItemModel, QStandardItem from pandas import DataFrame +from dgp.core.controllers.dataset_controller import DataSetController from dgp.core.oid import OID from dgp.core.controllers.controller_interfaces import IAirborneController, IFlightController from dgp.core.controllers.datafile_controller import DataFileController from dgp.core.controllers.flightline_controller import FlightLineController from dgp.core.controllers.gravimeter_controller import GravimeterController from dgp.core.models.data import DataFile +from dgp.core.models.dataset import DataSet from dgp.core.models.flight import Flight, FlightLine from dgp.core.models.meter import Gravimeter from dgp.core.types.enumerations import DataTypes @@ -46,6 +49,11 @@ class FlightController(IFlightController): by implementing __getattr__, and allowing access to any @property decorated methods of the Flight. """ + + @property + def hdf5path(self) -> Path: + return self._parent.hdf5store + inherit_context = True def __init__(self, flight: Flight, parent: IAirborneController = None): @@ -57,43 +65,34 @@ def __init__(self, flight: Flight, parent: IAirborneController = None): self.setData(flight, Qt.UserRole) self.setEditable(False) - self._active = False + self._datasets = ProjectFolder("Datasets", FOLDER_ICON) + self._active_dataset: DataSetController = None - self._flight_lines = ProjectFolder("Flight Lines", FOLDER_ICON) - self._data_files = ProjectFolder("Data Files", FOLDER_ICON) self._sensors = ProjectFolder("Sensors", FOLDER_ICON) - self.appendRow(self._flight_lines) - self.appendRow(self._data_files) + self.appendRow(self._datasets) self.appendRow(self._sensors) - self._control_map = {FlightLine: FlightLineController, - DataFile: DataFileController, + self._control_map = {DataSet: DataSetController, Gravimeter: GravimeterController} - self._child_map = {FlightLine: self._flight_lines, - DataFile: self._data_files, + self._child_map = {DataSet: self._datasets, Gravimeter: self._sensors} self._data_model = QStandardItemModel() + # TODO: How to keep this synced? + self._dataset_model = QStandardItemModel() - for line in self._flight.flight_lines: - self._flight_lines.appendRow(FlightLineController(line, self)) - - for file in self._flight.data_files: # type: DataFile - self._data_files.appendRow(DataFileController(file, self)) - - self._active_gravity = None # type: DataFileController - self._active_trajectory = None # type: DataFileController - - # Set the first available gravity/trajectory file to active - for file_ctrl in self._data_files.items(): # type: DataFileController - if self._active_gravity is None and file_ctrl.data_group == 'gravity': - self.set_active_child(file_ctrl) - if self._active_trajectory is None and file_ctrl.data_group == 'trajectory': - self.set_active_child(file_ctrl) + for dataset in self._flight._datasets: + control = DataSetController(dataset, self) + self._datasets.appendRow(control) + if dataset._active: + self.set_active_dataset(control) # TODO: Consider adding MenuPrototype class which could provide the means to build QMenu self._bindings = [ # pragma: no cover - ('addAction', ('Set Active', lambda: self.get_parent().set_active_child(self))), + ('addAction', ('Add Dataset', lambda: None)), + ('addAction', ('Set Active', + lambda: self.get_parent().set_active_child(self))), + # TODO: Move these actions to Dataset controller? ('addAction', ('Import Gravity', lambda: self.get_parent().load_file_dlg(DataTypes.GRAVITY, self))), ('addAction', ('Import Trajectory', @@ -113,12 +112,15 @@ def uid(self) -> OID: return self._flight.uid @property - def proxied(self) -> object: + def datamodel(self) -> object: return self._flight + # TODO: Rename this (maybe deprecated with DataSets) @property def data_model(self) -> QStandardItemModel: - """Return the data model representing each active Data channel in the flight""" + """Return the data model representing each active Data channel in + the flight + """ return self._data_model @property @@ -132,32 +134,6 @@ def menu_bindings(self): # pragma: no cover """ return self._bindings - @property - def gravity(self): - if not self._active_gravity: # pragma: no cover - self.log.warning("No gravity file is set to active state.") - return None - return self._active_gravity.get_data() - - @property - def trajectory(self): - if self._active_trajectory is None: # pragma: no cover - self.log.warning("No trajectory file is set to active state.") - return None - return self._active_trajectory.get_data() - - @property - def lines_model(self) -> QStandardItemModel: - """ - Returns the :obj:`QStandardItemModel` of FlightLine wrapper objects - """ - return self._flight_lines.internal_model - - @property - def lines(self) -> Generator[FlightLine, None, None]: - for line in self._flight.flight_lines: - yield line - def get_parent(self) -> IAirborneController: return self._parent @@ -175,45 +151,18 @@ def is_active(self): return self.get_parent().get_active_child() == self # TODO: This is not fully implemented - def set_active_child(self, child: DataFileController, emit: bool = True): - if not isinstance(child, DataFileController): - raise TypeError("Child {0!r} cannot be set to active (invalid type)".format(child)) - try: - df = self.load_data(child) - except LoadError: - self.log.exception("Error loading DataFile") - return - - for i in range(self._data_files.rowCount()): - ci = self._data_files.child(i, 0) # type: DataFileController - if ci.data_group == child.data_group: - ci.set_inactive() - - self.data_model.clear() - if child.data_group == 'gravity': - self._active_gravity = child - child.set_active() - - # Experimental work on channel model - # TODO: Need a way to clear ONLY the appropriate channels from the model, not all - # e.g. don't clear trajectory channels when gravity file is changed - - for col in df: - channel = QStandardItem(col) - channel.setData(df[col], Qt.UserRole) - channel.setCheckable(True) - self._data_model.appendRow([channel, QStandardItem("Plot1"), QStandardItem("Plot2")]) - - # TODO: Implement and add test coverage - elif child.data_group == 'trajectory': # pragma: no cover - self._active_trajectory = child - child.set_active() + def set_active_dataset(self, dataset: DataSetController, + emit: bool = True): + if not isinstance(dataset, DataSetController): + raise TypeError("Child {0!r} cannot be set to active (invalid type)".format(dataset)) + dataset.set_active(True) + self._active_dataset = dataset def get_active_child(self): # TODO: Implement and add test coverage - pass + return self._active_dataset - def add_child(self, child: Union[FlightLine, DataFile]) -> Union[FlightLineController, DataFileController]: + def add_child(self, child: DataSet) -> DataSetController: """Adds a child to the underlying Flight, and to the model representation for the appropriate child type. @@ -285,19 +234,10 @@ def get_child(self, uid: Union[str, OID]) -> Union[FlightLineController, DataFil A string base_uuid can be passed, or an :obj:`OID` object for comparison """ # TODO: Should this also search datafiles? - for item in itertools.chain(self._flight_lines.items(), # pragma: no branch - self._data_files.items()): + for item in self._datasets.items(): if item.uid == uid: return item - def load_data(self, datafile: DataFileController) -> DataFrame: - if self.get_parent() is None: - raise LoadError("Flight has no parent or HDF Controller") - try: - return self.get_parent().hdf5store.load_data(datafile.data(Qt.UserRole)) - except OSError as e: - raise LoadError from e - def set_name(self): # pragma: no cover name = helpers.get_input("Set Name", "Enter a new name:", self._flight.name) if name: diff --git a/dgp/core/controllers/flightline_controller.py b/dgp/core/controllers/flightline_controller.py index 34e0b39..8ad64cc 100644 --- a/dgp/core/controllers/flightline_controller.py +++ b/dgp/core/controllers/flightline_controller.py @@ -12,10 +12,9 @@ class FlightLineController(QStandardItem, AttributeProxy): - def __init__(self, flightline: FlightLine, controller: IFlightController): + def __init__(self, flightline: FlightLine, *args): super().__init__() self._flightline = flightline - self._flight_ctrl = controller self.setData(flightline, Qt.UserRole) self.setText(str(self._flightline)) self.setIcon(QIcon(":/icons/AutosizeStretch_16x.png")) @@ -25,11 +24,7 @@ def uid(self) -> OID: return self._flightline.uid @property - def flight(self) -> IFlightController: - return self._flight_ctrl - - @property - def proxied(self) -> FlightLine: + def datamodel(self) -> FlightLine: return self._flightline def update_line(self, start, stop, label: Optional[str] = None): diff --git a/dgp/core/controllers/gravimeter_controller.py b/dgp/core/controllers/gravimeter_controller.py index 9806f28..81bdac5 100644 --- a/dgp/core/controllers/gravimeter_controller.py +++ b/dgp/core/controllers/gravimeter_controller.py @@ -28,7 +28,7 @@ def uid(self) -> OID: return self._meter.uid @property - def proxied(self) -> object: + def datamodel(self) -> object: return self._meter @property diff --git a/dgp/core/controllers/hdf5_controller.py b/dgp/core/controllers/hdf5_controller.py deleted file mode 100644 index 87ac6e2..0000000 --- a/dgp/core/controllers/hdf5_controller.py +++ /dev/null @@ -1,174 +0,0 @@ -# -*- coding: utf-8 -*- -import logging -from pathlib import Path - -import tables -from pandas import HDFStore, DataFrame - -from ..models.data import DataFile - -__all__ = ['HDFController'] - -# Define Data Types/Extensions -HDF5_NAME = 'dgpdata.hdf5' - - -class HDFController: - """ - Do not instantiate this class directly. Call the module init() method - DataManager is designed to be a singleton class that is initialized and - stored within the module level var 'manager', other modules can then - request a reference to the instance via get_manager() and use the class - to load and save data. - This is similar in concept to the Python Logging - module, where the user can call logging.getLogger() to retrieve a global - root logger object. - The DataManager will be responsible for most if not all data IO, - providing a centralized interface to _store, retrieve, and export data. - To track the various data files that the DataManager manages, a JSON - registry is maintained within the project/data directory. This JSON - registry is updated and queried for relative file paths, and may also be - used to _store mappings of uid -> file for individual blocks of data. - """ - - def __init__(self, root_path, mkdir: bool = True): - self.log = logging.getLogger(__name__) - logging.captureWarnings(True) - self.dir = Path(root_path) - if not self.dir.exists() and mkdir: - self.dir.mkdir(parents=True) - # TODO: Consider searching by extension (.hdf5 .h5) for hdf5 datafile - self._path = self.dir.joinpath(HDF5_NAME) - self._path.touch(exist_ok=True) - self._cache = {} - self.log.debug("DataStore initialized.") - - @property - def hdf5path(self) -> Path: - return self._path - - @hdf5path.setter - def hdf5path(self, value): - value = Path(value) - if not value.exists(): - raise FileNotFoundError - else: - self._path = value - - @staticmethod - def join_path(flightid, grpid, uid): - return '/'.join(map(str, ['', flightid, grpid, uid])) - - def save_data(self, data: DataFrame, datafile: DataFile): - """ - Save a Pandas Series or DataFrame to the HDF5 Store - - TODO: This doc is outdated - Data is added to the local cache, keyed by its generated UID. - The generated UID is passed back to the caller for later reference. - This function serves as a dispatch mechanism for different data types. - e.g. To dump a pandas DataFrame into an HDF5 _store: - >>> df = DataFrame() - >>> uid = HDFController().save_data(df) - The DataFrame can later be loaded by calling load_data, e.g. - >>> df = HDFController().load_data(uid) - - Parameters - ---------- - data: Union[DataFrame, Series] - Data object to be stored on disk via specified format. - datafile: DataFile - - Returns - ------- - bool: - True on sucessful save - - Raises - ------ - - """ - - self._cache[datafile] = data - - with HDFStore(str(self.hdf5path)) as hdf: - try: - hdf.put(datafile.hdfpath, data, format='fixed', data_columns=True) - except (IOError, FileNotFoundError, PermissionError): - self.log.exception("Exception writing file to HDF5 _store.") - raise - else: - self.log.info("Wrote file to HDF5 _store at node: %s", datafile.hdfpath) - - return True - - def load_data(self, datafile: DataFile) -> DataFrame: - """ - Load data from a managed repository by UID - This public method is a dispatch mechanism that calls the relevant - loader based on the data type of the data represented by UID. - This method will first check the local cache for UID, and if the key - is not located, will load it from the HDF5 Data File. - - Parameters - ---------- - - Returns - ------- - DataFrame - Data retrieved from _store. - - Raises - ------ - KeyError - If data key (/flightid/grpid/uid) does not exist - """ - - if datafile in self._cache: - self.log.info("Loading data {} from cache.".format(datafile.uid)) - return self._cache[datafile] - else: - self.log.debug("Loading data %s from hdf5 _store.", datafile.hdfpath) - - try: - with HDFStore(str(self.hdf5path)) as hdf: - data = hdf.get(datafile.hdfpath) - except Exception as e: - self.log.exception(e) - raise IOError("Could not load DataFrame from path: %s" % datafile.hdfpath) - - # Cache the data - self._cache[datafile] = data - return data - - def delete_data(self, file: DataFile) -> bool: - raise NotImplementedError - - # See https://www.pytables.org/usersguide/libref/file_class.html#tables.File.set_node_attr - # For more details on setting/retrieving metadata from hdf5 file using pytables - # Note that the _v_ and _f_ prefixes are meant for instance variables and public methods - # within pytables - so the inspection warning can be safely ignored - - def get_node_attrs(self, path) -> list: - with tables.open_file(str(self.hdf5path)) as hdf: - try: - return hdf.get_node(path)._v_attrs._v_attrnames - except tables.exceptions.NoSuchNodeError: - raise ValueError("Specified path %s does not exist.", path) - - def _get_node_attr(self, path, attrname): - with tables.open_file(str(self.hdf5path)) as hdf: - try: - return hdf.get_node_attr(path, attrname) - except AttributeError: - return None - - def _set_node_attr(self, path, attrname, value): - with tables.open_file(str(self.hdf5path), 'a') as hdf: - try: - hdf.set_node_attr(path, attrname, value) - except tables.exceptions.NoSuchNodeError: - self.log.error("Unable to set attribute on path: %s key does not exist.") - raise KeyError("Node %s does not exist", path) - else: - return True diff --git a/dgp/core/controllers/project_controllers.py b/dgp/core/controllers/project_controllers.py index 5841b11..247dde1 100644 --- a/dgp/core/controllers/project_controllers.py +++ b/dgp/core/controllers/project_controllers.py @@ -6,17 +6,17 @@ import sys from pathlib import Path from pprint import pprint -from typing import Union +from typing import Union, List -from PyQt5.QtCore import Qt, QProcess, QObject -from PyQt5.QtGui import QStandardItem, QBrush, QColor, QStandardItemModel, QIcon +from PyQt5.QtCore import Qt, QProcess, QObject, QRegExp +from PyQt5.QtGui import QStandardItem, QBrush, QColor, QStandardItemModel, QIcon, QRegExpValidator from PyQt5.QtWidgets import QWidget from pandas import DataFrame from dgp.core.file_loader import FileLoader from dgp.core.oid import OID from dgp.core.controllers.controller_interfaces import IAirborneController, IFlightController -from .hdf5_controller import HDFController +from dgp.core.hdf5_manager import HDF5Manager from .flight_controller import FlightController from .gravimeter_controller import GravimeterController from .project_containers import ProjectFolder @@ -25,12 +25,12 @@ from dgp.gui.dialogs.add_flight_dialog import AddFlightDialog from dgp.gui.dialogs.add_gravimeter_dialog import AddGravimeterDialog from dgp.gui.dialogs.data_import_dialog import DataImportDialog +from dgp.gui.dialogs.project_properties_dialog import ProjectPropertiesDialog from dgp.core.models.data import DataFile from dgp.core.models.flight import Flight from dgp.core.models.meter import Gravimeter from dgp.core.models.project import GravityProject, AirborneProject from dgp.core.types.enumerations import DataTypes -from dgp.lib.etc import align_frames from dgp.lib.gravity_ingestor import read_at1a from dgp.lib.trajectory_ingestor import import_trajectory @@ -46,7 +46,6 @@ def __init__(self, project: AirborneProject): self.log = logging.getLogger(__name__) self._project = project self._parent = None - self._hdfc = HDFController(self._project.path) self._active = None self.setIcon(QIcon(":/icons/dgs")) @@ -71,15 +70,43 @@ def __init__(self, project: AirborneProject): self._bindings = [ ('addAction', ('Set Project Name', self.set_name)), - ('addAction', ('Show in Explorer', self.show_in_explorer)) + ('addAction', ('Show in Explorer', self.show_in_explorer)), + ('addAction', ('Project Properties', self.properties_dlg)) ] + # Experiment - declare underlying properties for UI use + # dict key is the attr name (use get_attr to retrieve the value) + # tuple of ( editable: True/False, Validator: QValidator ) + self._fields = { + 'name': (True, QRegExpValidator(QRegExp("[A-Za-z]+.{4,30}"))), + 'uid': (False, None), + 'path': (False, None), + 'description': (True, None), + 'create_date': (False, None), + 'modify_date': (False, None) + } + + def validator(self, key: str): + if key in self._fields: + return self._fields[key][1] + return None + + def writeable(self, key: str): + if key in self._fields: + return self._fields[key][0] + return True + + @property + def fields(self) -> List[str]: + """Return list of public attribute keys (for UI display)""" + return list(self._fields.keys()) + @property def uid(self) -> OID: return self._project.uid @property - def proxied(self) -> object: + def datamodel(self) -> object: return self._project @property @@ -94,9 +121,14 @@ def path(self) -> Path: def menu_bindings(self): return self._bindings + # TODO: Deprecate @property - def hdf5store(self) -> HDFController: - return self._hdfc + def hdf5store(self) -> Path: + return self.hdf5path + + @property + def hdf5path(self) -> Path: + return self._project.path.joinpath("dgpdata.hdf5") @property def meter_model(self) -> QStandardItemModel: @@ -192,32 +224,20 @@ def add_gravimeter(self): # pragma: no cover def update(self): # pragma: no cover """Emit an update event from the parent Model, signalling that data has been added/removed/modified in the project.""" + self.setText(self._project.name) if self.model() is not None: self.model().project_changed.emit() def _post_load(self, datafile: DataFile, data: DataFrame): # pragma: no cover - if self.hdf5store.save_data(data, datafile): + if HDF5Manager.save_data(data, datafile, path=self.hdf5path): self.log.info("Data imported and saved to HDF5 Store") return - # TODO: Implement align_frames functionality as below - # TODO: Consider the implications of multiple data files - # OR: insert align_frames into the transform graph and deal with it there - - # gravity = flight.gravity - # trajectory = flight.trajectory - # if gravity is not None and trajectory is not None: - # # align and crop the gravity and trajectory frames - # - # from lib.gravity_ingestor import DGS_AT1A_INTERP_FIELDS - # from lib.trajectory_ingestor import TRAJECTORY_INTERP_FIELDS - # - # fields = DGS_AT1A_INTERP_FIELDS | TRAJECTORY_INTERP_FIELDS - # new_gravity, new_trajectory = align_frames(gravity, trajectory, - # interp_only=fields) - def load_file_dlg(self, datatype: DataTypes = DataTypes.GRAVITY, destination: IFlightController = None): # pragma: no cover + # TODO: Move to dataset controller? + # How to get ref to parent window? Recursive search of parents until + # widget is found? def load_data(datafile: DataFile, params: dict): pprint(params) if datafile.group == 'gravity': @@ -238,3 +258,6 @@ def load_data(datafile: DataFile, params: dict): dlg.load.connect(load_data) dlg.exec_() + def properties_dlg(self): + dlg = ProjectPropertiesDialog(self) + dlg.exec_() diff --git a/dgp/core/hdf5_manager.py b/dgp/core/hdf5_manager.py new file mode 100644 index 0000000..6808f98 --- /dev/null +++ b/dgp/core/hdf5_manager.py @@ -0,0 +1,159 @@ +# -*- coding: utf-8 -*- +import logging +from pathlib import Path +from typing import Any + +import tables +from pandas import HDFStore, DataFrame + +from dgp.core.models.data import DataFile + +__all__ = ['HDF5Manager'] + +# Define Data Types/Extensions +HDF5_NAME = 'dgpdata.hdf5' + + +class HDF5Manager: + """HDF5Manager is a utility class used to read/write pandas DataFrames to and from + an HDF5 data file. This class is essentially a wrapper around the pandas HDFStore, + and features of the underlying pytables module, designed to allow easy storage + and retrieval of DataFrames based on a :obj:`~dgp.core.models.data.DataFile` + + HDF5Manager should not be directly instantiated, it provides classmethod's + and staticmethod's to store/retrieve data, without maintaining state, + except for the data cache as described below. + + The HDF5 Manager maintains a class level cache, which obviates the need to perform + expensive file-system operations to load data that has previously been loaded during + a session. + + HDF5Manager also provides utility methods to allow read/write of metadata attributes + on a particular node within the HDF5 file. + + """ + log = logging.getLogger(__name__) + _cache = {} + + @staticmethod + def join_path(flightid, grpid, uid): + return '/'.join(map(str, ['', flightid, grpid, uid])) + + @classmethod + def save_data(cls, data: DataFrame, datafile: DataFile, path: Path) -> bool: + """ + Save a Pandas Series or DataFrame to the HDF5 Store + + Data is added to the local cache, keyed by its generated UID. + The generated UID is passed back to the caller for later reference. + + Parameters + ---------- + data : DataFrame + Data object to be stored on disk via specified format. + datafile : DataFile + The DataFile metadata associated with the supplied data + path : Path + Path to the HDF5 file + + Returns + ------- + bool: + True on successful save + + Raises + ------ + :exc:`FileNotFoundError` + :exc:`PermissionError` + + """ + + cls._cache[datafile] = data + + with HDFStore(str(path)) as hdf: + try: + hdf.put(datafile.hdfpath, data, format='fixed', data_columns=True) + except (IOError, PermissionError): + cls.log.exception("Exception writing file to HDF5 _store.") + raise + else: + cls.log.info("Wrote file to HDF5 _store at node: %s", datafile.hdfpath) + + return True + + @classmethod + def load_data(cls, datafile: DataFile, path: Path) -> DataFrame: + """ + Load data from a managed repository by UID + This public method is a dispatch mechanism that calls the relevant + loader based on the data type of the data represented by UID. + This method will first check the local cache for UID, and if the key + is not located, will load it from the HDF5 Data File. + + Parameters + ---------- + datafile : DataFile + path : Path + + Returns + ------- + DataFrame + Data retrieved from _store. + + Raises + ------ + KeyError + If data key (/flightid/grpid/uid) does not exist + """ + if datafile in cls._cache: + cls.log.info("Loading data {} from cache.".format(datafile.uid)) + return cls._cache[datafile] + else: + cls.log.debug("Loading data %s from hdf5 _store.", datafile.hdfpath) + + try: + with HDFStore(str(path)) as hdf: + data = hdf.get(datafile.hdfpath) + except Exception as e: + cls.log.exception(e) + raise IOError("Could not load DataFrame from path: %s" % datafile.hdfpath) + + # Cache the data + cls._cache[datafile] = data + return data + + @classmethod + def delete_data(cls, file: DataFile, path: Path) -> bool: + raise NotImplementedError + + # See https://www.pytables.org/usersguide/libref/file_class.html#tables.File.set_node_attr + # For more details on setting/retrieving metadata from hdf5 file using pytables + # Note that the _v_ and _f_ prefixes are meant for instance variables and public methods + # within pytables - so the inspection warning can be safely ignored + + @classmethod + def get_node_attrs(cls, nodepath: str, path: Path) -> list: + with tables.open_file(str(path)) as hdf: + try: + return hdf.get_node(nodepath)._v_attrs._v_attrnames + except tables.exceptions.NoSuchNodeError: + raise ValueError("Specified path %s does not exist.", path) + + @classmethod + def _get_node_attr(cls, nodepath, attrname, path: Path): + with tables.open_file(str(path)) as hdf: + try: + return hdf.get_node_attr(nodepath, attrname) + except AttributeError: + return None + + @classmethod + def _set_node_attr(cls, nodepath: str, attrname: str, value: Any, path: Path): + with tables.open_file(str(path), 'a') as hdf: + try: + hdf.set_node_attr(nodepath, attrname, value) + except tables.exceptions.NoSuchNodeError: + cls.log.error("Unable to set attribute on path: %s key does not exist.") + raise KeyError("Node %s does not exist", nodepath) + else: + return True diff --git a/dgp/core/models/data.py b/dgp/core/models/data.py index c727116..57e6e56 100644 --- a/dgp/core/models/data.py +++ b/dgp/core/models/data.py @@ -46,3 +46,5 @@ def __str__(self): def __hash__(self): return hash(self.uid) + + diff --git a/dgp/core/models/dataset.py b/dgp/core/models/dataset.py new file mode 100644 index 0000000..151575c --- /dev/null +++ b/dgp/core/models/dataset.py @@ -0,0 +1,131 @@ +# -*- coding: utf-8 -*- +from pathlib import Path +from typing import List +from datetime import datetime + +import pandas as pd + +from dgp.core.hdf5_manager import HDF5Manager +from dgp.core.models.data import DataFile +from dgp.core.oid import OID + +__all__ = ['DataSegment', 'DataSet'] + + +class DataSegment: + def __init__(self, uid: OID, start: float, stop: float, sequence: int, + label: str = None): + self.uid = uid + self.uid.set_pointer(self) + self._start = start + self._stop = stop + self.sequence = sequence + self.label = label + + @property + def start(self) -> datetime: + return datetime.fromtimestamp(self._start) + + @start.setter + def start(self, value: float) -> None: + self._start = value + + @property + def stop(self) -> datetime: + return datetime.fromtimestamp(self._stop) + + @stop.setter + def stop(self, value: float) -> None: + self._stop = value + + def __str__(self): + return "Segment <{:%H:%M} -> {:%H:%M}>".format(self.start, self.stop) + + +class DataSet: + """DataSet is a paired set of Gravity and Trajectory Data + + DataSets can have segments defined, e.g. for an Airborne project these + would be Flight Lines. + + Notes + ----- + Once this class is implemented, DataFiles will be created and added only to + a DataSet, they will not be permitted as direct children of Flights + + """ + def __init__(self, path: Path = None, gravity: DataFile = None, + trajectory: DataFile = None, segments: List[DataSegment]=None, + uid: OID = None, parent=None): + self._parent = parent + self.uid = uid or OID(self) + self.uid.set_pointer(self) + self._path: Path = path + self._active: bool = False + self._aligned: bool = False + self._segments = segments or [] + + self._gravity = gravity + if self._gravity is not None: + self._gravity.set_parent(self) + self._trajectory = trajectory + if self._trajectory is not None: + self._trajectory.set_parent(self) + + def _align_frames(self): + pass + + @property + def gravity(self) -> DataFile: + return self._gravity + + @property + def trajectory(self) -> DataFile: + return self._trajectory + + @property + def dataframe(self) -> pd.DataFrame: + """Return the concatenated DataFrame of gravity and trajectory data.""" + grav_data = HDF5Manager.load_data(self.gravity, self._path) + traj_data = HDF5Manager.load_data(self.trajectory, self._path) + frame: pd.DataFrame = pd.concat([grav_data, traj_data]) + # Or use align_frames? + return frame + + def add_segment(self, segment: DataSegment): + segment.sequence = len(self._segments) + self._segments.append(segment) + + def get_segment(self, uid: OID): + + pass + + def remove_segment(self, uid: OID): + # self._segments.remove() + pass + + def update_segment(self): + pass + + def set_active(self, active: bool = True): + self._active = bool(active) + + def set_parent(self, parent): + self._parent = parent + + + # TODO: Implement align_frames functionality as below + # TODO: Consider the implications of multiple data files + # OR: insert align_frames into the transform graph and deal with it there + + # gravity = flight.gravity + # trajectory = flight.trajectory + # if gravity is not None and trajectory is not None: + # # align and crop the gravity and trajectory frames + # + # from lib.gravity_ingestor import DGS_AT1A_INTERP_FIELDS + # from lib.trajectory_ingestor import TRAJECTORY_INTERP_FIELDS + # + # fields = DGS_AT1A_INTERP_FIELDS | TRAJECTORY_INTERP_FIELDS + # new_gravity, new_trajectory = align_frames(gravity, trajectory, + # interp_only=fields) diff --git a/dgp/core/models/flight.py b/dgp/core/models/flight.py index 266231c..60505cf 100644 --- a/dgp/core/models/flight.py +++ b/dgp/core/models/flight.py @@ -3,6 +3,7 @@ from typing import List, Optional, Union from dgp.core.models.data import DataFile +from dgp.core.models.dataset import DataSet from dgp.core.models.meter import Gravimeter from dgp.core.oid import OID @@ -49,8 +50,8 @@ class Flight: Define a Flight class used to record and associate data with an entire survey flight (takeoff -> landing) """ - __slots__ = ('uid', 'name', '_flight_lines', '_data_files', '_meter', 'date', - 'notes', 'sequence', 'duration', 'parent') + __slots__ = ('uid', 'name', '_flight_lines', '_data_files', '_datasets', '_meter', + 'date', 'notes', 'sequence', 'duration', 'parent') def __init__(self, name: str, date: Optional[datetime] = None, notes: Optional[str] = None, sequence: int = 0, duration: int = 0, meter: str = None, @@ -66,6 +67,7 @@ def __init__(self, name: str, date: Optional[datetime] = None, notes: Optional[s self._flight_lines = kwargs.get('flight_lines', []) # type: List[FlightLine] self._data_files = kwargs.get('data_files', []) # type: List[DataFile] + self._datasets = kwargs.get('datasets', []) # type: List[DataSet] self._meter = meter @property @@ -76,7 +78,7 @@ def data_files(self) -> List[DataFile]: def flight_lines(self) -> List[FlightLine]: return self._flight_lines - def add_child(self, child: Union[FlightLine, DataFile, Gravimeter]) -> None: + def add_child(self, child: Union[FlightLine, DataFile, DataSet, Gravimeter]) -> None: # TODO: Is add/remove child necesarry or useful, just allow direct access to the underlying lists? if child is None: return @@ -84,6 +86,8 @@ def add_child(self, child: Union[FlightLine, DataFile, Gravimeter]) -> None: self._flight_lines.append(child) elif isinstance(child, DataFile): self._data_files.append(child) + elif isinstance(child, DataSet): + self._datasets.append(child) elif isinstance(child, Gravimeter): # pragma: no cover # TODO: Implement this properly self._meter = child.uid.base_uuid diff --git a/dgp/core/models/project.py b/dgp/core/models/project.py index 10ef8c1..9636ac9 100644 --- a/dgp/core/models/project.py +++ b/dgp/core/models/project.py @@ -159,26 +159,22 @@ def object_hook(self, json_o: dict): class GravityProject: - def __init__(self, name: str, path: Union[Path, str], description: Optional[str] = None, + def __init__(self, name: str, path: Union[Path], description: Optional[str] = None, create_date: Optional[datetime.datetime] = None, modify_date: Optional[datetime.datetime] = None, uid: Optional[str] = None, **kwargs): - self._uid = uid or OID(self, tag=name) - self._uid.set_pointer(self) + self.uid = uid or OID(self, tag=name) + self.uid.set_pointer(self) self._name = name self._path = path self._projectfile = PROJECT_FILE_NAME - self._description = description - self._create_date = create_date or datetime.datetime.utcnow() - self._modify_date = modify_date or self._create_date + self._description = description or "" + self.create_date = create_date or datetime.datetime.utcnow() + self.modify_date = modify_date or datetime.datetime.utcnow() self._gravimeters = kwargs.get('gravimeters', []) # type: List[Gravimeter] self._attributes = kwargs.get('attributes', {}) # type: Dict[str, Any] - @property - def uid(self) -> OID: - return self._uid - @property def name(self) -> str: return self._name @@ -192,6 +188,10 @@ def name(self, value: str) -> None: def path(self) -> Path: return Path(self._path) + @path.setter + def path(self, value: str) -> None: + self._path = Path(value) + @property def description(self) -> str: return self._description @@ -201,14 +201,6 @@ def description(self, value: str): self._description = value.strip() self._modify() - @property - def creation_time(self) -> datetime.datetime: - return self._create_date - - @property - def modify_time(self) -> datetime.datetime: - return self._modify_date - @property def gravimeters(self) -> List[Gravimeter]: return self._gravimeters @@ -233,6 +225,7 @@ def remove_child(self, child_id: OID) -> bool: def __repr__(self): return '<%s: %s/%s>' % (self.__class__.__name__, self.name, str(self.path)) + # TODO: Are these useful, or just fluff that should be removed def set_attr(self, key: str, value: Union[str, int, float, bool]) -> None: """Permit explicit meta-date attributes. We don't use the __setattr__ override as it complicates instance @@ -258,6 +251,7 @@ def __getitem__(self, item): # Protected utility methods def _modify(self): """Set the modify_date to now""" + print("Updating project modify time") self._modify_date = datetime.datetime.utcnow() # Serialization/De-Serialization methods diff --git a/dgp/gui/dialogs/custom_validators.py b/dgp/gui/dialogs/custom_validators.py index 162f3b2..a44310c 100644 --- a/dgp/gui/dialogs/custom_validators.py +++ b/dgp/gui/dialogs/custom_validators.py @@ -29,6 +29,12 @@ def validate(self, value: str, pos: int): class DirectoryValidator(QValidator): + """Used to validate a directory path. + + If exist_ok is True, validation will be successful if the directory already exists. + If exist_ok is False, validation will only be successful if the parent of the specified + path is a directory, and it exists. + """ def __init__(self, exist_ok=True, parent=None): super().__init__(parent=parent) self._exist_ok = exist_ok @@ -40,6 +46,8 @@ def validate(self, value: str, pos: int) -> Tuple[int, str, int]: except TypeError: return QValidator.Invalid, value, pos + if path.is_reserved(): + return QValidator.Invalid, value, pos if path.is_file(): return QValidator.Invalid, value, pos diff --git a/dgp/gui/dialogs/data_import_dialog.py b/dgp/gui/dialogs/data_import_dialog.py index 640ec0b..71bcbb7 100644 --- a/dgp/gui/dialogs/data_import_dialog.py +++ b/dgp/gui/dialogs/data_import_dialog.py @@ -65,7 +65,13 @@ def __init__(self, project: IAirborneController, self.qlw_datatype.setCurrentRow(self._type_map.get(datatype, 0)) self._flight_model = self.project.flight_model # type: QStandardItemModel + self.qcb_flight.currentIndexChanged.connect(self._flight_changed) self.qcb_flight.setModel(self._flight_model) + + # Dataset support - experimental + self._dataset_model = QStandardItemModel() + self.qcb_dataset.setModel(self._dataset_model) + self.qde_date.setDate(datetime.today()) self._calendar = QCalendarWidget() self.qde_date.setCalendarWidget(self._calendar) @@ -231,12 +237,20 @@ def _gravimeter_changed(self, index: int): # pragma: no cover self.log.debug("No meter available") return if isinstance(meter_ctrl, mtr.GravimeterController): - sensor_type = meter_ctrl.sensor_type or "Unknown" + sensor_type = meter_ctrl.get_attr('type') or "Unknown" self.qle_sensortype.setText(sensor_type) - self.qle_grav_format.setText(meter_ctrl.column_format) + self.qle_grav_format.setText(meter_ctrl.get_attr('column_format')) @pyqtSlot(int, name='_traj_timeformat_changed') def _traj_timeformat_changed(self, index: int): # pragma: no cover timefmt = self._traj_timeformat_model.item(index) cols = ', '.join(timefmt.data(Qt.UserRole)) self.qle_traj_format.setText(cols) + + @pyqtSlot(int, name='_flight_changed') + def _flight_changed(self, row: int): + index = self._flight_model.index(row, 0) + flt: IFlightController = self._flight_model.itemFromIndex(index) + # ds_model = flt.dataset_model + + diff --git a/dgp/gui/dialogs/project_properties_dialog.py b/dgp/gui/dialogs/project_properties_dialog.py new file mode 100644 index 0000000..f809e23 --- /dev/null +++ b/dgp/gui/dialogs/project_properties_dialog.py @@ -0,0 +1,82 @@ +# -*- coding: utf-8 -*- +from datetime import datetime +from pathlib import Path +from typing import List, Any + +from PyQt5.QtWidgets import QFormLayout, QLineEdit, QDateTimeEdit, QWidget +from PyQt5.QtWidgets import QDialog + +from dgp.core.oid import OID +from dgp.core.controllers.controller_interfaces import IAirborneController +from .dialog_mixins import FormValidator +from ..ui.project_properties_dialog import Ui_ProjectPropertiesDialog + + +class ProjectPropertiesDialog(QDialog, Ui_ProjectPropertiesDialog, FormValidator): + + def __init__(self, project: IAirborneController, parent=None): + super().__init__(parent=parent) + self.setupUi(self) + self._project = project + self.setWindowTitle(self._project.get_attr('name')) + self._updates = {} + self._field_map = { + str: (lambda v: v.strip(), QLineEdit), + Path: (lambda v: str(v.resolve()), QLineEdit), + datetime: (lambda v: v, QDateTimeEdit), + OID: (lambda v: v.base_uuid, QLineEdit) + } + + self._setup_properties_tab() + + def _get_field_attr(self, _type: Any): + try: + attrs = self._field_map[_type] + except KeyError: + for key in self._field_map.keys(): + if issubclass(_type, key): + return self._field_map[key] + return None + return attrs + + def _setup_properties_tab(self): + for key in self._project.fields: + enabled = self._project.writeable(key) + validator = self._project.validator(key) + + raw_value = self._project.get_attr(key) + data_type = type(raw_value) + + value_lambda, widget_type = self._get_field_attr(data_type) + + widget: QWidget = widget_type(value_lambda(raw_value)) + widget.setEnabled(enabled) + if validator: + widget.setValidator(validator) + + self.qfl_properties.addRow(str(key.strip('_')).capitalize(), widget) + if enabled: + self._updates[key] = data_type, widget + + @property + def validation_targets(self) -> List[QFormLayout]: + return [self.qfl_properties] + + @property + def validation_error(self): + return self.ql_validation_err + + def accept(self): + print("Updating values for fields:") + for key in self._updates: + print(key) + try: + self._project.set_attr(key, self._updates[key][1].text()) + except AttributeError: + print("Can't update key: {}".format(key)) + + if not self.validate(): + print("A value is invalid") + return + + super().accept() diff --git a/dgp/gui/main.py b/dgp/gui/main.py index 032fbdc..56a4972 100644 --- a/dgp/gui/main.py +++ b/dgp/gui/main.py @@ -65,7 +65,7 @@ def __init__(self, project: AirborneProjectController, *args): # Setup Project self.project = project - self.project.set_parent(self) + self.project.set_parent_widget(self) self.project_model = ProjectTreeModel(self.project) self.project_tree.setModel(self.project_model) self.project_tree.expandAll() @@ -115,9 +115,9 @@ def _init_slots(self): # Project Menu Actions # self.action_import_gps.triggered.connect( - lambda: self.project.load_file(enums.DataTypes.TRAJECTORY, )) + lambda: self.project.load_file_dlg(enums.DataTypes.TRAJECTORY, )) self.action_import_grav.triggered.connect( - lambda: self.project.load_file(enums.DataTypes.GRAVITY, )) + lambda: self.project.load_file_dlg(enums.DataTypes.GRAVITY, )) self.action_add_flight.triggered.connect(self.project.add_flight) self.action_add_meter.triggered.connect(self.project.add_gravimeter) @@ -125,9 +125,9 @@ def _init_slots(self): self.prj_add_flight.clicked.connect(self.project.add_flight) self.prj_add_meter.clicked.connect(self.project.add_gravimeter) self.prj_import_gps.clicked.connect( - lambda: self.project.load_file(enums.DataTypes.TRAJECTORY, )) + lambda: self.project.load_file_dlg(enums.DataTypes.TRAJECTORY, )) self.prj_import_grav.clicked.connect( - lambda: self.project.load_file(enums.DataTypes.GRAVITY, )) + lambda: self.project.load_file_dlg(enums.DataTypes.GRAVITY, )) # Tab Browser Actions # self.flight_tabs.tabCloseRequested.connect(self._tab_closed) @@ -201,7 +201,7 @@ def _flight_changed(self, flight: FlightController): else: flt_tab = FlightTab(flight) self._open_tabs[flight.uid] = flt_tab - idx = self.flight_tabs.addTab(flt_tab, flight.name) + idx = self.flight_tabs.addTab(flt_tab, flight.get_attr('name')) self.flight_tabs.setCurrentIndex(idx) @pyqtSlot(name='_project_mutated') diff --git a/dgp/gui/plotting/backends.py b/dgp/gui/plotting/backends.py index 29b5626..95d0814 100644 --- a/dgp/gui/plotting/backends.py +++ b/dgp/gui/plotting/backends.py @@ -34,7 +34,8 @@ class PyQtGridPlotWidget(GraphicsView): # TODO: Use multiple Y-Axes to plot 2 lines of different scales # See pyqtgraph/examples/MultiplePlotAxes.py - colors = ['r', 'g', 'b', 'g'] + colors = ['#1f77b4', '#ff7f0e', '#2ca02c', '#d62728', '#9467bd', + '#8c564b', '#e377c2', '#7f7f7f', '#bcbd22', '#17becf'] colorcycle = cycle([{'color': v} for v in colors]) def __init__(self, rows=1, cols=1, background='w', grid=True, @@ -102,8 +103,13 @@ def remove_series(self, series: pd.Series): def clear(self): """Clear all lines from all plots""" - # TODO: Implement this - pass + for sid in self._lines: + for plot in self._plots: + plot.legend.removeItem(self._lines[sid].name()) + plot.removeItem(self._lines[sid]) + + self._lines = {} + def add_onclick_handler(self, slot, rateLimit=60): sp = SignalProxy(self._gl.scene().sigMouseClicked, rateLimit=rateLimit, diff --git a/dgp/gui/plotting/plotters.py b/dgp/gui/plotting/plotters.py index 3f06a77..d40e0d3 100644 --- a/dgp/gui/plotting/plotters.py +++ b/dgp/gui/plotting/plotters.py @@ -167,7 +167,7 @@ def onclick(self, ev): stop = xpos + (vb_span * 0.05) self.add_linked_selection(start, stop) - def add_linked_selection(self, start, stop, uid=None, label=None): + def add_linked_selection(self, start, stop, uid=None, label=None, emit=True): """ Add a LinearFlightRegion selection across all linked x-axes With width ranging from start:stop @@ -183,7 +183,7 @@ def add_linked_selection(self, start, stop, uid=None, label=None): patch_region = [start, stop] lfr_group = [] - grpid = uid or OID(tag='flightline') + grpid = uid or OID(tag='segment') # Note pd.to_datetime(scalar) returns pd.Timestamp update = LineUpdate('add', grpid, pd.to_datetime(start), pd.to_datetime(stop), None) @@ -197,10 +197,10 @@ def add_linked_selection(self, start, stop, uid=None, label=None): lfr.setMovable(self._selecting) lfr_group.append(lfr) lfr.sigRegionChanged.connect(self.update) - # self._group_map[lfr] = grpid self._selections[grpid] = lfr_group - self.line_changed.emit(update) + if emit: + self.line_changed.emit(update) def remove(self, item: LinearFlightRegion): if not isinstance(item, LinearFlightRegion): diff --git a/dgp/gui/splash.py b/dgp/gui/splash.py index 760dbb5..5f557fe 100644 --- a/dgp/gui/splash.py +++ b/dgp/gui/splash.py @@ -1,6 +1,4 @@ # -*- coding: utf-8 -*- - - import sys import json import logging @@ -9,18 +7,16 @@ import PyQt5.QtWidgets as QtWidgets import PyQt5.QtCore as QtCore -from PyQt5.uic import loadUiType from dgp.core.controllers.project_controllers import AirborneProjectController from dgp.core.models.project import AirborneProject, GravityProject from dgp.gui.main import MainWindow from dgp.gui.utils import ConsoleHandler, LOG_FORMAT, LOG_COLOR_MAP, get_project_file from dgp.gui.dialogs.create_project_dialog import CreateProjectDialog - -splash_screen, _ = loadUiType('dgp/gui/ui/splash_screen.ui') +from dgp.gui.ui.splash_screen import Ui_Launcher -class SplashScreen(QtWidgets.QDialog, splash_screen): +class SplashScreen(QtWidgets.QDialog, Ui_Launcher): def __init__(self, *args): super().__init__(*args) self.log = self.setup_logging() diff --git a/dgp/gui/ui/data_import_dialog.ui b/dgp/gui/ui/data_import_dialog.ui index 66d5c4e..02ff97f 100644 --- a/dgp/gui/ui/data_import_dialog.ui +++ b/dgp/gui/ui/data_import_dialog.ui @@ -206,24 +206,44 @@ - - + + - Notes - - - qpte_notes + Dataset - - - - Qt::ScrollBarAlwaysOff + + + + 2 + + + + + + + + + 0 + 0 + + + + Add Dataset... + + + + + + + + + Date - + @@ -250,10 +270,20 @@ - - + + - Date + Notes + + + qpte_notes + + + + + + + Qt::ScrollBarAlwaysOff diff --git a/dgp/gui/ui/main_window.ui b/dgp/gui/ui/main_window.ui index f99ed2c..7b88fc0 100644 --- a/dgp/gui/ui/main_window.ui +++ b/dgp/gui/ui/main_window.ui @@ -251,6 +251,7 @@ + @@ -626,12 +627,27 @@ Import Gravity + + + true + + + + :/icons/dgs:/icons/dgs + + + Project Dock + + + Toggle the Project Sidebar + + ProjectTreeView QTreeView -
dgp.core.views.ProjectTreeView
+
dgp.gui.views.ProjectTreeView
 MainWorkspace @@ -727,5 +743,37 @@ + + action_project_dock_2 + toggled(bool) + project_dock + setVisible(bool) + + + -1 + -1 + + + 135 + 459 + + + + + project_dock + visibilityChanged(bool) + action_project_dock_2 + setChecked(bool) + + + 135 + 459 + + + -1 + -1 + + + diff --git a/dgp/gui/ui/properties_dialog.ui b/dgp/gui/ui/project_properties_dialog.ui similarity index 57% rename from dgp/gui/ui/properties_dialog.ui rename to dgp/gui/ui/project_properties_dialog.ui index fb53a18..f8320ad 100644 --- a/dgp/gui/ui/properties_dialog.ui +++ b/dgp/gui/ui/project_properties_dialog.ui @@ -1,7 +1,7 @@ - Dialog - + ProjectPropertiesDialog + 0 @@ -14,18 +14,8 @@ Dialog - - - - Qt::Horizontal - - - QDialogButtonBox::Cancel|QDialogButtonBox::Ok - - - - + QTabWidget::West @@ -38,28 +28,7 @@ - - - Properties - - - - - - - - - Qt::Vertical - - - - 20 - 40 - - - - - + @@ -70,14 +39,38 @@ + + + + + + QLabel { color: red; } + + + + + + + + + + Qt::Horizontal + + + QDialogButtonBox::Cancel|QDialogButtonBox::Ok + + + + + - buttonBox + qdbb_dialog_btns accepted() - Dialog + ProjectPropertiesDialog accept() @@ -91,9 +84,9 @@ - buttonBox + qdbb_dialog_btns rejected() - Dialog + ProjectPropertiesDialog reject() diff --git a/dgp/gui/ui/transform_tab_widget.ui b/dgp/gui/ui/transform_tab_widget.ui index 280f628..fd07707 100644 --- a/dgp/gui/ui/transform_tab_widget.ui +++ b/dgp/gui/ui/transform_tab_widget.ui @@ -6,7 +6,7 @@ 0 0 - 1000 + 475 500 @@ -26,7 +26,7 @@ - + 0 0 @@ -40,7 +40,7 @@ false - + Transforms @@ -57,19 +57,12 @@ - - - - - - Refresh - - - ... - - - - :/images/geoid:/images/geoid + + + + 0 + 0 + @@ -114,13 +107,13 @@ - - - - - Channels - - + + + + Channels + + + @@ -148,6 +141,12 @@ + + + Details + + + diff --git a/dgp/gui/utils.py b/dgp/gui/utils.py index 8636ab3..7870e30 100644 --- a/dgp/gui/utils.py +++ b/dgp/gui/utils.py @@ -44,9 +44,17 @@ def get_project_file(path: Path) -> Union[Path, None]: """ Attempt to retrieve a project file (*.d2p) from the given dir path, otherwise signal failure by returning False. - :param path: str or pathlib.Path : Directory path to project - :return: pathlib.Path : absolute path to *.d2p file if found, else False + + Parameters + ---------- + path : Path + Directory path to search for DGP project files + + Returns + ------- + Path : absolute path to DGP JSON file if found, else None + """ + # TODO: Read JSON and check for presence of a magic attribute that marks a project file for child in sorted(path.glob('*.json')): return child.resolve() - return None diff --git a/dgp/gui/widgets/__init__.py b/dgp/gui/widgets/__init__.py new file mode 100644 index 0000000..e69de29 diff --git a/dgp/gui/widgets/channel_select_widget.py b/dgp/gui/widgets/channel_select_widget.py new file mode 100644 index 0000000..08cc3a9 --- /dev/null +++ b/dgp/gui/widgets/channel_select_widget.py @@ -0,0 +1,123 @@ +# -*- coding: utf-8 -*- +import functools +from typing import Union + +from PyQt5.QtCore import QObject, Qt, pyqtSignal, QModelIndex, QIdentityProxyModel +from PyQt5.QtGui import QStandardItem, QStandardItemModel, QContextMenuEvent +from PyQt5.QtWidgets import (QWidget, QVBoxLayout, QListView, QMenu, QAction, + QSizePolicy, QPushButton) + + +class ChannelProxyModel(QIdentityProxyModel): + def __init__(self, parent=None): + super().__init__(parent=parent) + + def setSourceModel(self, model: QStandardItemModel): + super().setSourceModel(model) + + def insertColumns(self, p_int, p_int_1, parent=None, *args, **kwargs): + pass + + +class ChannelListView(QListView): + channel_plotted = pyqtSignal(int, QStandardItem) + channel_unplotted = pyqtSignal(QStandardItem) + + def __init__(self, nplots=1, parent=None): + super().__init__(parent) + self.setSizePolicy(QSizePolicy(QSizePolicy.Maximum, QSizePolicy.MinimumExpanding)) + self.setEditTriggers(QListView.NoEditTriggers) + self._n = nplots + self._actions = [] + + def setModel(self, model: QStandardItemModel): + super().setModel(model) + + def contextMenuEvent(self, event: QContextMenuEvent, *args, **kwargs): + index: QModelIndex = self.indexAt(event.pos()) + self._actions.clear() + item = self.model().itemFromIndex(index) + menu = QMenu(self) + for i in range(self._n): + action: QAction = QAction("Plot on %d" % i) + action.triggered.connect(functools.partial(self._plot_item, i, item)) + # action.setCheckable(True) + # action.setChecked(item.checkState()) + # action.toggled.connect(functools.partial(self._channel_toggled, item, i)) + self._actions.append(action) + menu.addAction(action) + + action_del: QAction = QAction("Clear from plot") + action_del.triggered.connect(functools.partial(self._unplot_item, item)) + menu.addAction(action_del) + + menu.exec_(event.globalPos()) + event.accept() + + def _channel_toggled(self, item: QStandardItem, plot: int, checked: bool): + print("item: %s in checkstate %s on plot: %d" % (item.data(Qt.DisplayRole), str(checked), plot)) + item.setCheckState(checked) + + def _plot_item(self, plot: int, item: QStandardItem): + print("Plotting %s on plot# %d" % (item.data(Qt.DisplayRole), plot)) + self.channel_plotted.emit(plot, item) + + def _unplot_item(self, item: QStandardItem): + self.channel_unplotted.emit(item) + + +class ChannelSelectWidget(QWidget): + """ + Working Notes: + Lets assume a channel can only be plotted once in total no matter how many plots + + Options - we can use check boxes, right-click context menu, or a table with 3 checkboxes (but 3 copies of the + channel?) + + Either the channel (QStandardItem) or the view needs to track its plotted state somehow + Perhaps we can use a QIdentityProxyModel to which we can add columns to without modifying + the source model. + + """ + channel_added = pyqtSignal(int, QStandardItem) + channel_removed = pyqtSignal(QStandardItem) + channels_cleared = pyqtSignal() + + def __init__(self, model: QStandardItemModel, plots: int = 1, parent: Union[QWidget, QObject] = None): + super().__init__(parent=parent, flags=Qt.Widget) + self._model = model + self._model.modelReset.connect(self.channels_cleared.emit) + self._model.rowsInserted.connect(self._rows_inserted) + self._model.itemChanged.connect(self._item_changed) + + self._view = ChannelListView(nplots=2, parent=self) + self._view.channel_plotted.connect(self.channel_added.emit) + self._view.channel_unplotted.connect(self.channel_removed.emit) + self._view.setModel(self._model) + + self._qpb_clear = QPushButton("Clear Channels") + self._qpb_clear.clicked.connect(self.channels_cleared.emit) + self._layout = QVBoxLayout(self) + self._layout.addWidget(self._view) + self._layout.addWidget(self._qpb_clear) + + + def _rows_inserted(self, parent: QModelIndex, first: int, last: int): + pass + # print("Rows have been inserted: %d to %d" % (first, last)) + + def _rows_removed(self, parent: QModelIndex, first: int, last: int): + pass + # print("Row has been removed: %d" % first) + + def _model_reset(self): + print("Model has been reset") + + def _item_changed(self, item: QStandardItem): + # Work only on single plot for now + if item.checkState(): + print("Plotting channel: %s" % item.data(Qt.DisplayRole)) + self.channel_added.emit(0, item) + else: + print("Removing channel: %s" % item.data(Qt.DisplayRole)) + self.channel_removed.emit(item) diff --git a/dgp/gui/workspace.py b/dgp/gui/workspace.py index 2853641..c4ff369 100644 --- a/dgp/gui/workspace.py +++ b/dgp/gui/workspace.py @@ -28,7 +28,7 @@ def __init__(self, flight: FlightController, parent=None, flags=0, **kwargs): self._layout.addWidget(self._workspace) # Define Sub-Tabs within Flight space e.g. Plot, Transform, Maps - self._plot_tab = PlotTab(label="Plot", flight=flight, axes=3) + self._plot_tab = PlotTab(label="Plot", flight=flight, dataset=flight.get) self._workspace.addTab(self._plot_tab, "Plot") self._transform_tab = TransformTab("Transforms", flight) diff --git a/dgp/gui/workspaces/BaseTab.py b/dgp/gui/workspaces/BaseTab.py index b95f3a4..45489ee 100644 --- a/dgp/gui/workspaces/BaseTab.py +++ b/dgp/gui/workspaces/BaseTab.py @@ -2,12 +2,13 @@ from PyQt5.QtWidgets import QWidget +from dgp.core.controllers.controller_interfaces import IFlightController from dgp.lib.etc import gen_uuid class BaseTab(QWidget): """Base Workspace Tab Widget - Subclass to specialize function""" - def __init__(self, label: str, flight, parent=None, **kwargs): + def __init__(self, label: str, flight: IFlightController, parent=None, **kwargs): super().__init__(parent, **kwargs) self.label = label self._flight = flight @@ -27,7 +28,7 @@ def model(self, value): self._model = value @property - def flight(self): + def flight(self) -> IFlightController: return self._flight @property diff --git a/dgp/gui/workspaces/PlotTab.py b/dgp/gui/workspaces/PlotTab.py index 21fbaf2..99d4b34 100644 --- a/dgp/gui/workspaces/PlotTab.py +++ b/dgp/gui/workspaces/PlotTab.py @@ -5,15 +5,14 @@ from PyQt5.QtCore import Qt from PyQt5.QtGui import QStandardItem -from PyQt5.QtWidgets import QVBoxLayout, QHBoxLayout, QDockWidget, QWidget, QListView, QSizePolicy +from PyQt5.QtWidgets import QVBoxLayout, QHBoxLayout, QDockWidget, QSizePolicy import PyQt5.QtWidgets as QtWidgets -from dgp.core.controllers.flightline_controller import FlightLineController -from dgp.core.models.flight import FlightLine +from dgp.core.controllers.dataset_controller import DataSetController from gui.widgets.channel_select_widget import ChannelSelectWidget -from . import BaseTab from dgp.core.controllers.flight_controller import FlightController from dgp.gui.plotting.plotters import LineUpdate, PqtLineSelectPlot +from . import BaseTab class PlotTab(BaseTab): @@ -22,17 +21,22 @@ class PlotTab(BaseTab): _name = "Line Selection" defaults = {'gravity': 0, 'long': 1, 'cross': 1} - def __init__(self, label: str, flight: FlightController, axes: int, - plot_default=True, **kwargs): + def __init__(self, label: str, flight: FlightController, + dataset: DataSetController, **kwargs): + # TODO: It will make more sense to associate a DataSet with the plot vs a Flight super().__init__(label, flight, **kwargs) - self.log = logging.getLogger('PlotTab') - self._ctrl_widget = None - self._axes_count = axes - self.plot = PqtLineSelectPlot(rows=2) + self.log = logging.getLogger(__name__) + self._dataset = dataset + self.plot: PqtLineSelectPlot = PqtLineSelectPlot(rows=2) self.plot.line_changed.connect(self._on_modified_line) - # self._channel_select = ChannelSelectDialog(flight.data_model, plots=1, parent=self) self._setup_ui() + # TODO: Lines should probably be associated with data files + # There should also be a check to ensure that the lines are within the bounds of the data + # Huge slowdowns occur when trying to plot a FlightLine and a channel when the points are weeks apart + # for line in flight.lines: + # self.plot.add_linked_selection(line.start.timestamp(), line.stop.timestamp(), uid=line.uid, emit=False) + def _setup_ui(self): qhbl_main = QHBoxLayout() qvbl_plot_layout = QVBoxLayout() @@ -56,19 +60,17 @@ def _setup_ui(self): alignment=Qt.AlignRight) qvbl_plot_layout.addLayout(qhbl_top_buttons) - # TODO Re-enable this - # for line in self.flight.lines: - # self.plot.add_patch(line.start, line.stop, line.uid, line.label) - - channel_widget = ChannelSelectWidget(self.flight.data_model) + channel_widget = ChannelSelectWidget(self._dataset.channel_model) channel_widget.channel_added.connect(self._channel_added) channel_widget.channel_removed.connect(self._channel_removed) channel_widget.channels_cleared.connect(self._clear_plot) - self.plot.widget.setSizePolicy(QSizePolicy(QSizePolicy.Expanding, QSizePolicy.Expanding)) + self.plot.widget.setSizePolicy(QSizePolicy(QSizePolicy.Expanding, + QSizePolicy.Expanding)) qvbl_plot_layout.addWidget(self.plot.widget) dock_widget = QDockWidget("Channels") - dock_widget.setSizePolicy(QSizePolicy(QSizePolicy.Maximum, QSizePolicy.Preferred)) + dock_widget.setSizePolicy(QSizePolicy(QSizePolicy.Maximum, + QSizePolicy.Preferred)) dock_widget.setWidget(channel_widget) self._qpb_channel_toggle.toggled.connect(dock_widget.setVisible) qhbl_main.addItem(qvbl_plot_layout) @@ -78,11 +80,11 @@ def _setup_ui(self): def _channel_added(self, plot: int, item: QStandardItem): self.plot.add_series(item.data(Qt.UserRole), plot) - def _channel_removed(self, plot: int, item: QStandardItem): + def _channel_removed(self, item: QStandardItem): self.plot.remove_series(item.data(Qt.UserRole)) def _clear_plot(self): - print("Clearing plot") + self.plot.clear() def _toggle_selection(self, state: bool): self.plot.selection_mode = state @@ -91,12 +93,6 @@ def _toggle_selection(self, state: bool): else: self._mode_label.setText("") - def set_defaults(self, channels): - for name, plot in self.defaults.items(): - for channel in channels: - if channel.field == name.lower(): - self.model.move_channel(channel.uid, plot) - def _on_modified_line(self, update: LineUpdate): # TODO: Update this to work with new project print(update) @@ -108,33 +104,12 @@ def _on_modified_line(self, update: LineUpdate): if isinstance(stop, pd.Timestamp): stop = stop.timestamp() except OSError: - print("Error converting Timestamp to float POSIX timestamp") + self.log.exception("Error converting Timestamp to float POSIX timestamp") return - if update.uid in [x.uid for x in self.flight.lines]: - if update.action == 'modify': - line: FlightLineController = self.flight.get_child(update.uid) - line.update_line(start, stop, update.label) - self.log.debug("Modified line: start={start}, stop={stop}," - " label={label}" - .format(start=start, stop=stop, - label=update.label)) - elif update.action == 'remove': - line = self.flight.get_child(update.uid) # type: FlightLineController - if line is None: - self.log.warning("Couldn't retrieve FlightLine from Flight for removal") - return - self.flight.remove_child(line.proxied, line.row(), confirm=False) - self.log.debug("Removed line: start={start}, " - "stop={stop}, label={label}" - .format(start=start, stop=stop, - label=update.label)) + if update.action == 'modify': + self._dataset.update_segment(update.uid, start, stop, update.label) + elif update.action == 'remove': + self._dataset.remove_segment(update.uid) else: - line = FlightLine(start, stop, 0, uid=update.uid) - # line = types.FlightLine(update.start, update.stop, uid=update.uid) - self.flight.add_child(line) - self.log.debug("Added line to flight {flt}: start={start}, " - "stop={stop}, label={label}, uid={uid}" - .format(flt=self.flight.name, start=start, - stop=stop, label=update.label, - uid=line.uid)) + self._dataset.add_segment(update.uid, start, stop, update.label) diff --git a/examples/treemodel_integration_test.py b/examples/treemodel_integration_test.py index a420e31..962a3c9 100644 --- a/examples/treemodel_integration_test.py +++ b/examples/treemodel_integration_test.py @@ -1,5 +1,5 @@ # -*- coding: utf-8 -*- - +import datetime import sys import traceback from itertools import count @@ -8,22 +8,36 @@ from PyQt5 import QtCore -from core.controllers.FlightController import FlightController, StandardFlightItem -from core.controllers.ProjectController import AirborneProjectController -from core.models.ProjectTreeModel import ProjectTreeModel -from core.models.flight import Flight, FlightLine, DataFile -from core.models.meter import Gravimeter -from core.models.project import AirborneProject +from dgp.core.models.dataset import DataSet +from dgp.core.oid import OID +from dgp.core.controllers.flight_controller import FlightController +from dgp.core.controllers.project_controllers import AirborneProjectController +from core.controllers.project_treemodel import ProjectTreeModel +from dgp.core.models.flight import Flight, FlightLine, DataFile +from dgp.core.models.meter import Gravimeter +from dgp.core.models.project import AirborneProject from PyQt5.uic import loadUiType from PyQt5.QtWidgets import QDialog, QApplication -from core.views import ProjectTreeView +from gui.views import ProjectTreeView tree_dialog, _ = loadUiType('treeview.ui') -class TreeTest(QDialog, tree_dialog): +def excepthook(type_, value, traceback_): + """This allows IDE to properly display unhandled exceptions which are + otherwise silently ignored as the application is terminated. + Override default excepthook with + >>> sys.excepthook = excepthook + + See: http://pyqt.sourceforge.net/Docs/PyQt5/incompatibilities.html + """ + traceback.print_exception(type_, value, traceback_) + QtCore.qFatal('') + + +class TreeTestDialog(QDialog, tree_dialog): """ Tree GUI Members: treeViewTop : QTreeView @@ -42,61 +56,62 @@ def __init__(self, model): model.flight_changed.connect(self._flight_changed) self.treeView.expandAll() - self._cmodel = None - def _flight_changed(self, flight: FlightController): print("Setting fl model") - self._cmodel = flight.lines_model - print(self._cmodel) - print(self._cmodel.rowCount()) - print(self._cmodel.item(0)) - self.cb_flight_lines.setModel(self._cmodel) - - -def excepthook(type_, value, traceback_): - """This allows IDE to properly display unhandled exceptions which are - otherwise silently ignored as the application is terminated. - Override default excepthook with - >>> sys.excepthook = excepthook - - See: http://pyqt.sourceforge.net/Docs/PyQt5/incompatibilities.html - """ - traceback.print_exception(type_, value, traceback_) - QtCore.qFatal('') + self.cb_flight_lines.setModel(flight.lines_model) if __name__ == "__main__": sys.excepthook = excepthook - project = AirborneProject(name="Test Project", path=Path('.')) - flt = Flight('Test Flight') - flt.add_child(FlightLine(23, 66, 1)) - flt.add_child(DataFile('/flights/gravity/1234', 'Test File', 'gravity')) + # Mock up a base project + project = AirborneProject(name="Test Project", path=Path('.'), create_date=datetime.datetime(2018, 5, 12)) + flt = Flight('Test Flight', datetime.datetime(2018, 3, 9), uid=OID(base_uuid='0a193af02d1f46c6b8bad4dad028b3bc')) + flt.add_child(FlightLine(datetime.datetime.now().timestamp(), datetime.datetime.now().timestamp() + 3600, 1)) + flt.add_child(DataSet()) + # first one is real reference in HDF5 + # flt.add_child(DataFile('gravity', datetime.datetime.today(), + # source_path=Path('C:\\RealSample.txt'), + # uid=OID(base_uuid='4458f26f6d7b4eb09097093dd2b85c61'))) + # flt.add_child(DataFile('gravity', datetime.datetime.today(), source_path=Path('C:\\data2.csv'))) + # flt.add_child(DataFile('trajectory', datetime.datetime.today(), + # source_path=Path('C:\\trajectory1.dat'))) at1a6 = Gravimeter('AT1A-6') at1a10 = Gravimeter('AT1A-10') - project.add_child(at1a6) - project.add_child(flt) - - prj_ctrl = AirborneProjectController(project) - - model = ProjectTreeModel(prj_ctrl) + # project.add_child(flt) app = QApplication([]) - # app = QGuiApplication(sys.argv) - dlg = TreeTest(model) + prj_ctrl = AirborneProjectController(project) + model = ProjectTreeModel(prj_ctrl) + # proxy_model = ProjectTreeProxyModel() + # proxy_model.setSourceModel(model) + # proxy_model.setFilterRole(Qt.UserRole) + # proxy_model.setFilterType(Flight) + + dlg = TreeTestDialog(model) + # dlg.qlv_proxy.setModel(proxy_model) + prj_ctrl.set_parent_widget(dlg) + fc = prj_ctrl.add_child(flt) + dlg.qlv_0.setModel(fc.data_model) + dlg.qlv_1.setModel(fc.data_model) counter = count(2) def add_line(): - for fc in prj_ctrl.flight_ctrls: - fc.add_child(FlightLine(next(counter), next(counter), next(counter))) + for fc in prj_ctrl.flights.items(): + fc.add_child(FlightLine(datetime.datetime.now().timestamp(), datetime.datetime.now().timestamp() + 2400, + next(counter))) + # cn_select_dlg = ChannelSelectDialog(fc.data_model, plots=1) dlg.btn.clicked.connect(add_line) dlg.btn_export.clicked.connect(lambda: pprint(project.to_json(indent=4))) - dlg.btn_flight.clicked.connect(lambda: prj_ctrl.add_child(Flight('Flight %d' % next(counter)))) + dlg.btn_flight.clicked.connect(lambda: prj_ctrl.add_flight()) + dlg.btn_gravimeter.clicked.connect(lambda: prj_ctrl.add_gravimeter()) + dlg.btn_importdata.clicked.connect(lambda: prj_ctrl.load_file_dlg()) + dlg.qpb_properties.clicked.connect(lambda: prj_ctrl.properties_dlg()) dlg.show() prj_ctrl.add_child(at1a10) sys.exit(app.exec_()) diff --git a/examples/treeview.ui b/examples/treeview.ui index f7dff63..e813c38 100644 --- a/examples/treeview.ui +++ b/examples/treeview.ui @@ -7,7 +7,7 @@ 0 0 580 - 481 + 650 @@ -34,6 +34,23 @@ + + + + + + + 0 + 0 + + + + + + + + + @@ -44,6 +61,20 @@ + + + + Add Gravimeter + + + + + + + Import Data + + + @@ -51,6 +82,13 @@ + + + + Project Properties + + + @@ -64,7 +102,7 @@ ProjectTreeView QTreeView -
dgp.core.views.ProjectTreeView
+
dgp.gui.views.ProjectTreeView
 diff --git a/tests/test_datastore.py b/tests/test_datastore.py index 8e2e4e9..ef22b0d 100644 --- a/tests/test_datastore.py +++ b/tests/test_datastore.py @@ -1,6 +1,5 @@ # -*- coding: utf-8 -*- -import tempfile import uuid from datetime import datetime from pathlib import Path @@ -10,21 +9,21 @@ from dgp.core.models.flight import Flight from dgp.core.models.data import DataFile -from dgp.core.oid import OID -from dgp.core.controllers.hdf5_controller import HDFController, HDF5_NAME +from dgp.core.hdf5_manager import HDF5Manager, HDF5_NAME # from .context import dgp +HDF5_FILE = "test.hdf5" class TestDataManager: - @pytest.fixture(scope='session') - def temp_dir(self) -> Path: - return Path(tempfile.gettempdir()).joinpath(str(uuid.uuid4())) + # @pytest.fixture(scope='session') + # def temp_dir(self) -> Path: + # return Path(tempfile.gettempdir()).joinpath(str(uuid.uuid4())) - @pytest.fixture(scope='session') - def store(self, temp_dir: Path) -> HDFController: - hdf = HDFController(temp_dir, mkdir=True) - return hdf + # @pytest.fixture(scope='session') + # def store(self, temp_dir: Path) -> HDF5Manager: + # hdf = HDF5Manager(temp_dir, mkdir=True) + # return hdf @pytest.fixture def test_df(self): @@ -32,34 +31,31 @@ def test_df(self): 'c2-3']} return DataFrame.from_dict(data) - def test_datastore_init(self, store, temp_dir): - assert isinstance(store, HDFController) - assert store.dir == temp_dir - assert store.hdf5path == temp_dir.joinpath(HDF5_NAME) - - def test_datastore_save(self, store, test_df): + def test_datastore_save(self, test_df, tmpdir): flt = Flight('Test-Flight') file = DataFile('gravity', datetime.now(), Path('./test.dat'), parent=flt) - assert store.save_data(test_df, file) - loaded = store.load_data(file) + path = Path(tmpdir).joinpath(HDF5_FILE) + assert HDF5Manager.save_data(test_df, file, path=path) + loaded = HDF5Manager.load_data(file, path=path) assert test_df.equals(loaded) - def test_ds_metadata(self, store: HDFController, test_df): + def test_ds_metadata(self, test_df, tmpdir): + path = Path(tmpdir).joinpath(HDF5_FILE) flt = Flight('TestMetadataFlight') file = DataFile('gravity', datetime.now(), source_path=Path('./test.dat'), parent=flt) - store.save_data(test_df, file) + HDF5Manager.save_data(test_df, file, path=path) attr_key = 'test_attr' attr_value = {'a': 'complex', 'v': 'value'} # Assert True result first - assert store._set_node_attr(file.hdfpath, attr_key, attr_value) + assert HDF5Manager._set_node_attr(file.hdfpath, attr_key, attr_value, path) # Validate value was stored, and can be retrieved - result = store._get_node_attr(file.hdfpath, attr_key) + result = HDF5Manager._get_node_attr(file.hdfpath, attr_key, path) assert attr_value == result # Test retrieval of keys for a specified node - assert attr_key in store.get_node_attrs(file.hdfpath) + assert attr_key in HDF5Manager.get_node_attrs(file.hdfpath, path) with pytest.raises(KeyError): - store._set_node_attr('/invalid/node/path', attr_key, attr_value) + HDF5Manager._set_node_attr('/invalid/node/path', attr_key, attr_value, path) diff --git a/tests/test_gui_utils.py b/tests/test_gui_utils.py new file mode 100644 index 0000000..bcdc502 --- /dev/null +++ b/tests/test_gui_utils.py @@ -0,0 +1,16 @@ +# -*- coding: utf-8 -*- +from pathlib import Path + +import dgp.gui.utils as utils + + +def test_get_project_file(tmpdir): + _dir = Path(tmpdir) + # _other_file = _dir.joinpath("abc.json") + # _other_file.touch() + _prj_file = _dir.joinpath("dgp.json") + _prj_file.touch() + + file = utils.get_project_file(_dir) + assert _prj_file.resolve() == file + diff --git a/tests/test_project_controllers.py b/tests/test_project_controllers.py index 531d793..19e8bdc 100644 --- a/tests/test_project_controllers.py +++ b/tests/test_project_controllers.py @@ -9,12 +9,15 @@ from PyQt5.QtGui import QStandardItemModel from pandas import DataFrame +from core.hdf5_manager import HDF5Manager +from core.models.dataset import DataSet from dgp.core.controllers.flightline_controller import FlightLineController from dgp.core.controllers.project_controllers import AirborneProjectController from dgp.core.models.project import AirborneProject from dgp.core.controllers.controller_mixins import AttributeProxy from dgp.core.controllers.controller_interfaces import IChild, IMeterController, IParent from dgp.core.controllers.gravimeter_controller import GravimeterController +from dgp.core.controllers.dataset_controller import DataSetController from dgp.core.models.meter import Gravimeter from dgp.core.controllers.datafile_controller import DataFileController from dgp.core.models.data import DataFile @@ -47,16 +50,18 @@ def test_flightline_controller(): pass +# TODO: Rewrite this def test_datafile_controller(): flight = Flight('test_flightline_controller') fl_controller = FlightController(flight) - datafile = DataFile('gravity', datetime(2018, 6, 15), - source_path=Path('c:\\data\\gravity.dat')) - fl_controller.add_child(datafile) + # TODO: Deprecated, DataFiles cannot be children + # datafile = DataFile('gravity', datetime(2018, 6, 15), + # source_path=Path('c:\\data\\gravity.dat')) + # fl_controller.add_child(datafile) - assert datafile in flight.data_files + # assert datafile in flight.data_files - assert isinstance(fl_controller._data_files.child(0), DataFileController) + # assert isinstance(fl_controller._data_files.child(0), DataFileController) def test_gravimeter_controller(tmpdir): @@ -82,7 +87,7 @@ def test_gravimeter_controller(tmpdir): assert hash(meter_ctrl) meter_ctrl_clone = meter_ctrl.clone() - assert meter == meter_ctrl_clone.proxied + assert meter == meter_ctrl_clone.datamodel assert "AT1A-Test" == meter_ctrl.data(Qt.DisplayRole) meter_ctrl.set_attr('name', "AT1A-New") @@ -101,13 +106,15 @@ def test_flight_controller(make_line, project: AirborneProjectController): _traj_data = [0, 1, 5, 9] _grav_data = [2, 8, 1, 0] # Load test data into temporary project HDFStore - project.hdf5store.save_data(DataFrame(_traj_data), data0) - project.hdf5store.save_data(DataFrame(_grav_data), data1) + HDF5Manager.save_data(DataFrame(_traj_data), data0, path=project.hdf5path) + HDF5Manager.save_data(DataFrame(_grav_data), data1, path=project.hdf5path) + # project.hdf5store.save_data(DataFrame(_traj_data), data0) + # project.hdf5store.save_data(DataFrame(_grav_data), data1) - assert data0 in flight.data_files - assert data1 in flight.data_files - assert 1 == len(flight.flight_lines) - assert 2 == len(flight.data_files) + # assert data0 in flight.data_files + # assert data1 in flight.data_files + # assert 1 == len(flight.flight_lines) + # assert 2 == len(flight.data_files) fc = project.add_child(flight) assert hash(fc) @@ -119,16 +126,16 @@ def test_flight_controller(make_line, project: AirborneProjectController): assert flight.uid == fc.uid assert flight.name == fc.data(Qt.DisplayRole) - assert fc._active_gravity is not None - assert fc._active_trajectory is not None - assert DataFrame(_traj_data).equals(fc.trajectory) - assert DataFrame(_grav_data).equals(fc.gravity) + # assert fc._active_gravity is not None + # assert fc._active_trajectory is not None + # assert DataFrame(_traj_data).equals(fc.trajectory) + # assert DataFrame(_grav_data).equals(fc.gravity) - line1 = make_line() - line2 = make_line() - - assert fc.add_child(line1) - assert fc.add_child(line2) + # line1 = make_line() + # line2 = make_line() + # + # assert fc.add_child(line1) + # assert fc.add_child(line2) # The data doesn't exist for this DataFile data2 = DataFile('gravity', datetime(2018, 5, 25), Path('./data2.dat')) @@ -137,8 +144,8 @@ def test_flight_controller(make_line, project: AirborneProjectController): fc.set_active_child(data2_ctrl) assert fc.get_active_child() != data2_ctrl - assert line1 in flight.flight_lines - assert line2 in flight.flight_lines + # assert line1 in flight.flight_lines + # assert line2 in flight.flight_lines assert data2 in flight.data_files @@ -146,15 +153,15 @@ def test_flight_controller(make_line, project: AirborneProjectController): assert isinstance(model, QAbstractItemModel) assert 3 == model.rowCount() - lines = [line0, line1, line2] - for i in range(model.rowCount()): - index = model.index(i, 0) - child = model.data(index, Qt.UserRole) - assert lines[i] == child - + # lines = [line0, line1, line2] + # for i in range(model.rowCount()): + # index = model.index(i, 0) + # child = model.data(index, Qt.UserRole) + # assert lines[i] == child + # # Test use of lines generator - for i, line in enumerate(fc.lines): - assert lines[i] == line + # for i, line in enumerate(fc.lines): + # assert lines[i] == line with pytest.raises(TypeError): fc.add_child({1: "invalid child"}) @@ -163,28 +170,28 @@ def test_flight_controller(make_line, project: AirborneProjectController): fc.set_active_child("not a child") fc.set_parent(None) - with pytest.raises(LoadError): - fc.load_data(data0) + # with pytest.raises(LoadError): + # fc.load_data(data0) # Test child removal - line1_ctrl = fc.get_child(line1.uid) - assert isinstance(line1_ctrl, FlightLineController) - assert line1.uid == line1_ctrl.uid - data1_ctrl = fc.get_child(data1.uid) - assert isinstance(data1_ctrl, DataFileController) - assert data1.uid == data1_ctrl.uid - - assert 3 == len(list(fc.lines)) - assert line1 in flight.flight_lines - fc.remove_child(line1, line1_ctrl.row(), confirm=False) - assert 2 == len(list(fc.lines)) - assert line1 not in flight.flight_lines - - assert 3 == fc._data_files.rowCount() - assert data1 in flight.data_files - fc.remove_child(data1, data1_ctrl.row(), confirm=False) - assert 2 == fc._data_files.rowCount() - assert data1 not in flight.data_files + # line1_ctrl = fc.get_child(line1.uid) + # assert isinstance(line1_ctrl, FlightLineController) + # assert line1.uid == line1_ctrl.uid + # data1_ctrl = fc.get_child(data1.uid) + # assert isinstance(data1_ctrl, DataFileController) + # assert data1.uid == data1_ctrl.uid + # + # assert 3 == len(list(fc.lines)) + # assert line1 in flight.flight_lines + # fc.remove_child(line1, line1_ctrl.row(), confirm=False) + # assert 2 == len(list(fc.lines)) + # assert line1 not in flight.flight_lines + # + # assert 3 == fc._data_files.rowCount() + # assert data1 in flight.data_files + # fc.remove_child(data1, data1_ctrl.row(), confirm=False) + # assert 2 == fc._data_files.rowCount() + # assert data1 not in flight.data_files with pytest.raises(TypeError): fc.remove_child("Not a real child", 1, confirm=False) @@ -203,7 +210,7 @@ def test_airborne_project_controller(tmpdir): assert 1 == len(project.gravimeters) project_ctrl = AirborneProjectController(project) - assert project == project_ctrl.proxied + assert project == project_ctrl.datamodel assert project_ctrl.path == project.path project_ctrl.set_parent_widget(APP) @@ -242,7 +249,7 @@ def test_airborne_project_controller(tmpdir): fc2 = project_ctrl.get_child(flight2.uid) assert isinstance(fc2, FlightController) - assert flight2 == fc2.proxied + assert flight2 == fc2.datamodel assert 3 == project_ctrl.flights.rowCount() project_ctrl.remove_child(flight2, fc2.row(), confirm=False) @@ -258,3 +265,19 @@ def test_airborne_project_controller(tmpdir): jsons = project_ctrl.save(to_file=False) assert isinstance(jsons, str) + + +def test_dataset_controller(tmpdir): + """Test DataSet controls + Load data from HDF5 Store + Behavior when incomplete (no grav or traj) + """ + hdf = Path(tmpdir).joinpath('test.hdf5') + ds = DataSet(hdf) + dsc = DataSetController(ds) + + + + + + diff --git a/tests/test_project_models.py b/tests/test_project_models.py index 9f8ef83..df2ad2a 100644 --- a/tests/test_project_models.py +++ b/tests/test_project_models.py @@ -14,9 +14,11 @@ from pprint import pprint import pytest -from pandas import DataFrame +import pandas as pd +from dgp.core.hdf5_manager import HDF5Manager from dgp.core.models.data import DataFile +from dgp.core.models.dataset import DataSet from dgp.core.models import project, flight from dgp.core.models.meter import Gravimeter @@ -124,7 +126,7 @@ def test_project_attr(): assert prj_path == prj.path assert "Test Project 1" == prj.description prj.description = " Description with gratuitous whitespace " - assert abs(prj.modify_time - datetime.utcnow()).microseconds < 10 + assert abs(prj.modify_date - datetime.utcnow()).microseconds < 1500 assert "Description with gratuitous whitespace" == prj.description prj.set_attr('tie_value', 1234) @@ -215,7 +217,7 @@ def test_project_serialize(make_flight, make_line, tmpdir): enc_date = json.dumps(_date, cls=project.ProjectEncoder) assert _date == json.loads(enc_date, cls=project.ProjectDecoder, klass=None) with pytest.raises(TypeError): - json.dumps(DataFrame([0, 1]), cls=project.ProjectEncoder) + json.dumps(pd.DataFrame([0, 1]), cls=project.ProjectEncoder) # Test serialize to file prj.to_json(to_file=True) @@ -259,7 +261,7 @@ def test_project_deserialize(make_flight, make_line): assert serialized == re_serialized assert attrs == prj_deserialized._attributes - assert prj.creation_time == prj_deserialized.creation_time + assert prj.create_date == prj_deserialized.create_date flt_names = [flt.name for flt in prj_deserialized.flights] assert f1_name in flt_names @@ -320,3 +322,24 @@ def test_gravimeter(): config = meter.read_config(Path("tests/at1a-fake.ini")) assert {} == meter.read_config(Path("tests/sample_gravity.csv")) + + +def test_dataset(tmpdir): + path = Path(tmpdir).joinpath("test.hdf5") + df_grav = DataFile('gravity', datetime.utcnow(), Path('gravity.dat')) + df_traj = DataFile('trajectory', datetime.utcnow(), Path('gps.dat')) + dataset = DataSet(path, df_grav, df_traj) + + assert df_grav == dataset.gravity + assert df_traj == dataset.trajectory + + frame_grav = pd.DataFrame([0, 1, 2]) + frame_traj = pd.DataFrame([7, 8, 9]) + + HDF5Manager.save_data(frame_grav, df_grav, path) + HDF5Manager.save_data(frame_traj, df_traj, path) + + expected_concat: pd.DataFrame = pd.concat([frame_grav, frame_traj]) + assert expected_concat.equals(dataset.dataframe) + + From ee162d7cb9b3fecdf76013b0ffe1b71dfb2635c4 Mon Sep 17 00:00:00 2001 From: Zachery Brady Date: Fri, 13 Jul 2018 16:10:12 -0600 Subject: [PATCH 136/236] Rework DataSets into project replacing individual DataFiles. Logically airborne data should be paired as a GPS DataFile and a Gravity DataFile (we'll worry about split files later), the DataSet functionality creates a group of the two distinct files, and adds an API layer to enable use of the data contained within them. It also makes sense that Flight Lines (renamed as DataSegments) should be grouped with the particular DataSet that they are created for, as opposed to the Flight itself (which may in future enable multiple DataSets to be added). Tests have been reorganized, added to, and split where applicable. Various other changes were made within the project structure where needed to implement the DataSet functionality. --- dgp/core/controllers/controller_bases.py | 3 - dgp/core/controllers/controller_interfaces.py | 52 ++- dgp/core/controllers/datafile_controller.py | 39 +- dgp/core/controllers/dataset_controller.py | 226 ++++++----- dgp/core/controllers/flight_controller.py | 119 +++--- dgp/core/controllers/flightline_controller.py | 35 -- dgp/core/controllers/project_containers.py | 5 - dgp/core/controllers/project_controllers.py | 75 ++-- dgp/core/file_loader.py | 6 +- dgp/core/hdf5_manager.py | 29 +- dgp/core/models/dataset.py | 94 +++-- dgp/core/models/flight.py | 92 +---- dgp/core/models/meter.py | 11 +- dgp/core/models/project.py | 26 +- dgp/gui/dialogs/data_import_dialog.py | 61 +-- dgp/gui/dialogs/dialog_mixins.py | 33 +- dgp/gui/workspace.py | 3 +- tests/conftest.py | 69 ++++ tests/test_controllers.py | 367 ++++++++++++++++++ tests/test_datastore.py | 61 --- tests/test_dialogs.py | 34 +- tests/test_hdf5store.py | 67 ++++ tests/test_loader.py | 2 +- tests/test_models.py | 153 ++++++++ tests/test_project_controllers.py | 283 -------------- tests/test_project_models.py | 345 ---------------- tests/test_serialization.py | 111 ++++++ 27 files changed, 1252 insertions(+), 1149 deletions(-) delete mode 100644 dgp/core/controllers/flightline_controller.py create mode 100644 tests/conftest.py create mode 100644 tests/test_controllers.py delete mode 100644 tests/test_datastore.py create mode 100644 tests/test_hdf5store.py create mode 100644 tests/test_models.py delete mode 100644 tests/test_project_controllers.py delete mode 100644 tests/test_project_models.py create mode 100644 tests/test_serialization.py diff --git a/dgp/core/controllers/controller_bases.py b/dgp/core/controllers/controller_bases.py index 2279c01..09d09bf 100644 --- a/dgp/core/controllers/controller_bases.py +++ b/dgp/core/controllers/controller_bases.py @@ -4,9 +4,6 @@ class BaseController(IBaseController): - def __init__(self, parent=None): - super().__init__() - @property def uid(self) -> OID: raise NotImplementedError diff --git a/dgp/core/controllers/controller_interfaces.py b/dgp/core/controllers/controller_interfaces.py index bfbb4b6..1e6de96 100644 --- a/dgp/core/controllers/controller_interfaces.py +++ b/dgp/core/controllers/controller_interfaces.py @@ -3,7 +3,6 @@ from typing import Any, Union, Optional from PyQt5.QtGui import QStandardItem, QStandardItemModel -from pandas import DataFrame from dgp.core.controllers.controller_mixins import AttributeProxy from dgp.core.oid import OID @@ -14,6 +13,10 @@ Interface module, while not exactly Pythonic, helps greatly by providing interface definitions for the various controller modules, which often cannot be imported as a type hints in various modules due to circular imports. + +Abstract Base Classes (collections.ABC) are not used due to the complications +invited with multiple inheritance and metaclass mis-matching. As most controller +level classes also subclass QStandardItem and/or AttributeProxy. """ @@ -47,7 +50,7 @@ def add_child(self, child) -> 'IBaseController': """ raise NotImplementedError - def remove_child(self, child, row: int, confirm: bool = True) -> None: + def remove_child(self, child, confirm: bool = True) -> None: raise NotImplementedError def get_child(self, uid: Union[str, OID]) -> IChild: @@ -75,11 +78,13 @@ def add_flight(self): def add_gravimeter(self): raise NotImplementedError - def load_file_dlg(self, datatype: DataTypes, destination: Optional['IFlightController'] = None): # pragma: no cover + def load_file_dlg(self, datatype: DataTypes, + flight: 'IFlightController' = None, + dataset: 'IDataSetController' = None): # pragma: no cover raise NotImplementedError @property - def hdf5store(self): + def hdf5path(self) -> Path: raise NotImplementedError @property @@ -105,11 +110,11 @@ class IFlightController(IBaseController, IParent, IChild): def set_active_child(self, child, emit: bool = True): raise NotImplementedError - def get_active_child(self): + def get_active_dataset(self): raise NotImplementedError @property - def hdf5path(self) -> Path: + def project(self) -> IAirborneController: raise NotImplementedError @@ -118,4 +123,37 @@ class IMeterController(IBaseController, IChild): class IDataSetController(IBaseController, IChild): - pass + def add_datafile(self, datafile) -> None: + """ + Add a :obj:`DataFile` to the :obj:`DataSetController`, potentially + overwriting an existing file of the same group (gravity/trajectory) + + Parameters + ---------- + datafile : :obj:`DataFile` + + """ + raise NotImplementedError + + def add_segment(self, uid: OID, start: float, stop: float, + label: str = ""): + raise NotImplementedError + + def get_segment(self, uid: OID): + raise NotImplementedError + + def remove_segment(self, uid: OID) -> None: + """ + Removes the specified data-segment from the DataSet. + + Parameters + ---------- + uid : :obj:`OID` + uid (OID or str) of the segment to be removed + + Raises + ------ + :exc:`KeyError` if supplied uid is not contained within the DataSet + + """ + raise NotImplementedError diff --git a/dgp/core/controllers/datafile_controller.py b/dgp/core/controllers/datafile_controller.py index 06e2e95..9b4a698 100644 --- a/dgp/core/controllers/datafile_controller.py +++ b/dgp/core/controllers/datafile_controller.py @@ -1,9 +1,10 @@ # -*- coding: utf-8 -*- import logging from PyQt5.QtCore import Qt -from PyQt5.QtGui import QStandardItem, QIcon, QColor, QBrush +from PyQt5.QtGui import QStandardItem, QIcon from dgp.core.oid import OID +from dgp.core.controllers.controller_interfaces import IDataSetController from dgp.core.controllers.controller_interfaces import IFlightController from dgp.core.controllers.controller_mixins import AttributeProxy from dgp.core.models.data import DataFile @@ -17,23 +18,14 @@ class DataFileController(QStandardItem, AttributeProxy): def __init__(self, datafile: DataFile, dataset=None): super().__init__() self._datafile = datafile - self._dataset = dataset # type: DataSetController + self._dataset = dataset # type: IDataSetController self.log = logging.getLogger(__name__) - if datafile is not None: - self.setText(self._datafile.label) - self.setToolTip("Source Path: " + str(self._datafile.source_path)) - self.setData(self._datafile, role=Qt.UserRole) - if self._datafile.group == 'gravity': - self.setIcon(QIcon(GRAV_ICON)) - elif self._datafile.group == 'trajectory': - self.setIcon(QIcon(GPS_ICON)) - else: - self.setText("No Data") + self.set_datafile(datafile) self._bindings = [ ('addAction', ('Describe', self._describe)), - ('addAction', ('Delete <%s>' % self._datafile, lambda: None)) + # ('addAction', ('Delete <%s>' % self._datafile, lambda: None)) ] @property @@ -41,21 +33,36 @@ def uid(self) -> OID: return self._datafile.uid @property - def dataset(self) -> 'DataSetController': + def dataset(self) -> 'IDataSetController': return self._dataset @property - def menu_bindings(self): + def menu_bindings(self): # pragma: no cover return self._bindings @property - def data_group(self): + def group(self): return self._datafile.group @property def datamodel(self) -> object: return self._datafile + def set_datafile(self, datafile: DataFile): + self._datafile = datafile + if datafile is None: + self.setText("No Data") + self.setToolTip("No Data") + self.setData(None, Qt.UserRole) + else: + self.setText(datafile.label) + self.setToolTip("Source path: {!s}".format(datafile.source_path)) + self.setData(datafile, role=Qt.UserRole) + if self._datafile.group == 'gravity': + self.setIcon(QIcon(GRAV_ICON)) + elif self._datafile.group == 'trajectory': + self.setIcon(QIcon(GPS_ICON)) + def _describe(self): pass # df = self.flight.load_data(self) diff --git a/dgp/core/controllers/dataset_controller.py b/dgp/core/controllers/dataset_controller.py index b02b6ed..799119b 100644 --- a/dgp/core/controllers/dataset_controller.py +++ b/dgp/core/controllers/dataset_controller.py @@ -1,12 +1,11 @@ # -*- coding: utf-8 -*- -import functools -import logging -from PyQt5.QtGui import QColor, QBrush, QIcon, QStandardItemModel +from typing import List, Union + +from PyQt5.QtCore import Qt +from PyQt5.QtGui import QColor, QBrush, QIcon, QStandardItemModel, QStandardItem from pandas import DataFrame -from core.hdf5_manager import HDF5Manager from dgp.core.controllers.project_containers import ProjectFolder -from dgp.core.file_loader import FileLoader from dgp.core.models.data import DataFile from dgp.core.types.enumerations import DataTypes from dgp.core.oid import OID @@ -15,27 +14,33 @@ from dgp.core.controllers.datafile_controller import DataFileController from dgp.core.controllers.controller_bases import BaseController from dgp.core.models.dataset import DataSet, DataSegment -from dgp.gui.dialogs.data_import_dialog import DataImportDialog -from dgp.lib.gravity_ingestor import read_at1a -from dgp.lib.trajectory_ingestor import import_trajectory + +ACTIVE_COLOR = "#85acea" +INACTIVE_COLOR = "#ffffff" class DataSegmentController(BaseController): - def __init__(self, segment: DataSegment): + def __init__(self, segment: DataSegment, clone=False): super().__init__() self._segment = segment - self.setText(str(self._segment)) + self._clone = clone + self.setData(segment, Qt.UserRole) + self.update() @property def uid(self) -> OID: return self._segment.uid @property - def datamodel(self) -> object: + def datamodel(self) -> DataSegment: return self._segment def update(self): self.setText(str(self._segment)) + self.setToolTip(repr(self._segment)) + + def clone(self) -> 'DataSegmentController': + return DataSegmentController(self._segment, clone=True) class DataSetController(IDataSetController): @@ -44,35 +49,54 @@ def __init__(self, dataset: DataSet, flight: IFlightController, super().__init__() self._dataset = dataset self._flight = flight + self._dataset.parent = flight + self._project = self._flight.project self._name = name + self._active = False + self.setEditable(False) self.setText("DataSet") self.setIcon(QIcon(":icons/folder_open.png")) - self._grav_file = DataFileController(self._dataset.gravity) - self._traj_file = DataFileController(self._dataset.gravity) + self.setBackground(QBrush(QColor(INACTIVE_COLOR))) + self._grav_file = DataFileController(self._dataset.gravity, self) + self._traj_file = DataFileController(self._dataset.trajectory, self) + self._child_map = {'gravity': self._grav_file, + 'trajectory': self._traj_file} + self._segments = ProjectFolder("Segments") + for segment in dataset.segments: + seg_ctrl = DataSegmentController(segment) + self._segments.appendRow(seg_ctrl) + self.appendRow(self._grav_file) self.appendRow(self._traj_file) self.appendRow(self._segments) + self._dataframe = None self._channel_model = QStandardItemModel() + self._update() - self._menu_bindings = [ + self._menu_bindings = [ # pragma: no cover ('addAction', ('Set Name', lambda: None)), ('addAction', ('Set Active', lambda: None)), ('addAction', ('Add Segment', lambda: None)), - ('addAction', ('Import Gravity', lambda: None)), - ('addAction', ('Import Trajectory', lambda: None)), + ('addAction', ('Import Gravity', + lambda: self._project.load_file_dlg(DataTypes.GRAVITY))), + ('addAction', ('Import Trajectory', + lambda: self._project.load_file_dlg(DataTypes.TRAJECTORY))), ('addAction', ('Delete', lambda: None)), ('addAction', ('Properties', lambda: None)) ] + def clone(self): + return DataSetController(self._dataset, self._flight) + @property def uid(self) -> OID: return self._dataset.uid @property - def menu_bindings(self): + def menu_bindings(self): # pragma: no cover return self._menu_bindings @property @@ -80,105 +104,123 @@ def datamodel(self) -> DataSet: return self._dataset @property - def channel_model(self) -> QStandardItemModel: + def series_model(self) -> QStandardItemModel: return self._channel_model + @property + def segment_model(self) -> QStandardItemModel: + return self._segments.internal_model + + @property + def columns(self) -> List[str]: + return [col for col in self.dataframe()] + + def _update(self): + if self.dataframe() is not None: + self._channel_model.clear() + for col in self._dataframe: + series = QStandardItem(col) + series.setData(self._dataframe[col], Qt.UserRole) + self._channel_model.appendRow(series) + + @property + def gravity(self) -> Union[DataFrame, None]: + return self._dataset.gravity_frame + + @property + def trajectory(self) -> Union[DataFrame, None]: + return self._dataset.trajectory_frame + + def dataframe(self) -> DataFrame: + if self._dataframe is None: + self._dataframe = self._dataset.dataframe + return self._dataframe + + def slice(self, segment_uid: OID): + df = self.dataframe() + if df is None: + return None + + segment = self.get_segment(segment_uid).datamodel + # start = df.index.searchsorted(segment.start) + # stop = df.index.searchsorted(segment.stop) + + segment_df = df.loc[segment.start:segment.stop] + return segment_df + def get_parent(self) -> IFlightController: return self._flight def set_parent(self, parent: IFlightController) -> None: + self._flight.remove_child(self.uid, confirm=False) self._flight = parent + self._flight.add_child(self.datamodel) + self._update() + + def add_datafile(self, datafile: DataFile) -> None: + datafile.set_parent(self) + if datafile.group == 'gravity': + self._dataset.gravity = datafile + self._grav_file.set_datafile(datafile) + elif datafile.group == 'trajectory': + self._dataset.trajectory = datafile + self._traj_file.set_datafile(datafile) + else: + raise TypeError("Invalid DataFile group provided.") - def add_segment(self, uid: OID, start: float, stop: float, label: str = ""): - print("Adding data segment {!s}".format(uid)) + self._dataframe = None + self._update() + + def get_datafile(self, group) -> DataFileController: + return self._child_map[group] + + def add_segment(self, uid: OID, start: float, stop: float, + label: str = "") -> DataSegmentController: segment = DataSegment(uid, start, stop, self._segments.rowCount(), label) + self._dataset.segments.append(segment) seg_ctrl = DataSegmentController(segment) - # TODO: Need DataSegmentController - self._dataset.add_segment(segment) self._segments.appendRow(seg_ctrl) + return seg_ctrl def get_segment(self, uid: OID) -> DataSegmentController: - for segment in self._segments.items(): + for segment in self._segments.items(): # type: DataSegmentController if segment.uid == uid: return segment - def update_segment(self, uid: OID, start: float, stop: float, - label: str = ""): + def update_segment(self, uid: OID, start: float = None, stop: float = None, + label: str = None): segment = self.get_segment(uid) - - # TODO: Get the controller from the ProjectFolder instance instead + # TODO: Find a better way to deal with model item clones if segment is None: - raise KeyError("Invalid UID, DataSegment does not exist.") - - segment.set_attr('start', start) - segment.set_attr('stop', stop) - segment.set_attr('label', label) + raise KeyError(f'Invalid UID, no segment exists with UID: {uid!s}') + + segment_clone = self.segment_model.item(segment.row()) + if start: + segment.set_attr('start', start) + segment_clone.set_attr('start', start) + if stop: + segment.set_attr('stop', stop) + segment_clone.set_attr('stop', stop) + if label: + segment.set_attr('label', label) + segment_clone.set_attr('label', label) def remove_segment(self, uid: OID): segment = self.get_segment(uid) if segment is None: - print("NO matching segment found to remove") - return + raise KeyError(f'Invalid UID, no segment exists with UID: {uid!s}') self._segments.removeRow(segment.row()) + self._dataset.segments.remove(segment.datamodel) - def set_active(self, active: bool = True) -> None: - self._dataset.set_active(active) - if active: - self.setBackground(QBrush(QColor("#85acea"))) - else: - self.setBackground(QBrush(QColor("white"))) - - def _add_datafile(self, datafile: DataFile, data: DataFrame): - # TODO: Refactor - HDF5Manager.save_data(data, datafile, '') # TODO: Get prj HDF Path - if datafile.group == 'gravity': - self.removeRow(self._grav_file.row()) - dfc = DataFileController(datafile, dataset=self.datamodel) - self._grav_file = dfc - self.appendRow(dfc) + @property + def active(self) -> bool: + return self._active - elif datafile.group == 'trajectory': - pass + @active.setter + def active(self, active: bool) -> None: + self._active = active + if active: + self.setBackground(QBrush(QColor(ACTIVE_COLOR))) else: - raise TypeError("Invalid data group") - - def load_file_dlg(self, datatype: DataTypes = DataTypes.GRAVITY, - destination: IFlightController = None): # pragma: no cover - """ - Launch a Data Import dialog to load a Trajectory/Gravity data file into - a dataset. - - Parameters - ---------- - datatype - destination - - Returns - ------- - - """ - parent = self.model().parent() - - def load_data(datafile: DataFile, params: dict): - if datafile.group == 'gravity': - method = read_at1a - elif datafile.group == 'trajectory': - method = import_trajectory - else: - print("Unrecognized data group: " + datafile.group) - return - loader = FileLoader(datafile.source_path, method, parent=parent, - **params) - loader.completed.connect(functools.partial(self._add_datafile, - datafile)) - # TODO: Connect completed to add_child method of the flight - loader.start() - - dlg = DataImportDialog(self, datatype, parent=parent) - if destination is not None: - dlg.set_initial_flight(destination) - dlg.load.connect(load_data) - dlg.exec_() - - + self.setBackground(QBrush(QColor(INACTIVE_COLOR))) diff --git a/dgp/core/controllers/flight_controller.py b/dgp/core/controllers/flight_controller.py index 0228dd1..1f7d54c 100644 --- a/dgp/core/controllers/flight_controller.py +++ b/dgp/core/controllers/flight_controller.py @@ -11,12 +11,9 @@ from dgp.core.controllers.dataset_controller import DataSetController from dgp.core.oid import OID from dgp.core.controllers.controller_interfaces import IAirborneController, IFlightController -from dgp.core.controllers.datafile_controller import DataFileController -from dgp.core.controllers.flightline_controller import FlightLineController from dgp.core.controllers.gravimeter_controller import GravimeterController -from dgp.core.models.data import DataFile from dgp.core.models.dataset import DataSet -from dgp.core.models.flight import Flight, FlightLine +from dgp.core.models.flight import Flight from dgp.core.models.meter import Gravimeter from dgp.core.types.enumerations import DataTypes from dgp.gui.dialogs.add_flight_dialog import AddFlightDialog @@ -26,10 +23,6 @@ FOLDER_ICON = ":/icons/folder_open.png" -class LoadError(Exception): - pass - - class FlightController(IFlightController): """ FlightController is a wrapper around :obj:`Flight` objects, and provides @@ -50,10 +43,6 @@ class FlightController(IFlightController): methods of the Flight. """ - @property - def hdf5path(self) -> Path: - return self._parent.hdf5store - inherit_context = True def __init__(self, flight: Flight, parent: IAirborneController = None): @@ -72,34 +61,32 @@ def __init__(self, flight: Flight, parent: IAirborneController = None): self.appendRow(self._datasets) self.appendRow(self._sensors) - self._control_map = {DataSet: DataSetController, - Gravimeter: GravimeterController} + self._child_control_map = {DataSet: DataSetController, + Gravimeter: GravimeterController} self._child_map = {DataSet: self._datasets, Gravimeter: self._sensors} - self._data_model = QStandardItemModel() - # TODO: How to keep this synced? - self._dataset_model = QStandardItemModel() - - for dataset in self._flight._datasets: + for dataset in self._flight.datasets: control = DataSetController(dataset, self) self._datasets.appendRow(control) - if dataset._active: - self.set_active_dataset(control) + + if not len(self._flight.datasets): + self.add_child(DataSet(self._parent.hdf5path)) # TODO: Consider adding MenuPrototype class which could provide the means to build QMenu self._bindings = [ # pragma: no cover ('addAction', ('Add Dataset', lambda: None)), ('addAction', ('Set Active', lambda: self.get_parent().set_active_child(self))), - # TODO: Move these actions to Dataset controller? ('addAction', ('Import Gravity', - lambda: self.get_parent().load_file_dlg(DataTypes.GRAVITY, self))), + lambda: self.get_parent().load_file_dlg( + DataTypes.GRAVITY, flight=self))), ('addAction', ('Import Trajectory', - lambda: self.get_parent().load_file_dlg(DataTypes.TRAJECTORY, self))), + lambda: self.get_parent().load_file_dlg( + DataTypes.TRAJECTORY, flight=self))), ('addSeparator', ()), ('addAction', ('Delete <%s>' % self._flight.name, - lambda: self.get_parent().remove_child(self._flight, self.row(), True))), + lambda: self.get_parent().remove_child(self.uid, True))), ('addAction', ('Rename Flight', lambda: self.set_name())), ('addAction', ('Properties', lambda: AddFlightDialog.from_existing(self, self.get_parent()).exec_())) @@ -111,18 +98,6 @@ def __init__(self, flight: Flight, parent: IAirborneController = None): def uid(self) -> OID: return self._flight.uid - @property - def datamodel(self) -> object: - return self._flight - - # TODO: Rename this (maybe deprecated with DataSets) - @property - def data_model(self) -> QStandardItemModel: - """Return the data model representing each active Data channel in - the flight - """ - return self._data_model - @property def menu_bindings(self): # pragma: no cover """ @@ -134,6 +109,18 @@ def menu_bindings(self): # pragma: no cover """ return self._bindings + @property + def datamodel(self) -> Flight: + return self._flight + + @property + def datasets(self) -> QStandardItemModel: + return self._datasets.internal_model + + @property + def project(self) -> IAirborneController: + return self._parent + def get_parent(self) -> IAirborneController: return self._parent @@ -143,6 +130,7 @@ def set_parent(self, parent: IAirborneController) -> None: def update(self): self.setText(self._flight.name) self.setToolTip(str(self._flight.uid)) + super().update() def clone(self): return FlightController(self._flight, parent=self.get_parent()) @@ -151,15 +139,17 @@ def is_active(self): return self.get_parent().get_active_child() == self # TODO: This is not fully implemented - def set_active_dataset(self, dataset: DataSetController, - emit: bool = True): + def set_active_dataset(self, dataset: DataSetController): if not isinstance(dataset, DataSetController): - raise TypeError("Child {0!r} cannot be set to active (invalid type)".format(dataset)) - dataset.set_active(True) + raise TypeError(f'Cannot set {dataset!r} to active (invalid type)') + dataset.active = True self._active_dataset = dataset - def get_active_child(self): - # TODO: Implement and add test coverage + def get_active_dataset(self) -> DataSetController: + if self._active_dataset is None: + for i in range(self._datasets.rowCount()): + self._active_dataset = self._datasets.child(i, 0) + break return self._active_dataset def add_child(self, child: DataSet) -> DataSetController: @@ -168,42 +158,41 @@ def add_child(self, child: DataSet) -> DataSetController: Parameters ---------- - child : Union[:obj:`FlightLine`, :obj:`DataFile`] + child : :obj:`DataSet` The child model instance - either a FlightLine or DataFile Returns ------- - Union[:obj:`FlightLineController`, :obj:`DataFileController`] + :obj:`DataSetController` Returns a reference to the controller encapsulating the added child Raises ------ :exc:`TypeError` - if child is not a :obj:`FlightLine` or :obj:`DataFile` + if child is not a :obj:`DataSet` """ child_key = type(child) - if child_key not in self._control_map: + if child_key not in self._child_control_map: raise TypeError("Invalid child type {0!s} supplied".format(child_key)) - self._flight.add_child(child) - control = self._control_map[child_key](child, self) - self._child_map[child_key].appendRow(control) + self._flight.datasets.append(child) + control = DataSetController(child, self) + self._datasets.appendRow(control) return control - def remove_child(self, child: Union[FlightLine, DataFile], row: int, confirm: bool = True) -> bool: + def remove_child(self, uid: Union[OID, str], confirm: bool = True) -> bool: """ - Remove the specified child primitive from the underlying :obj:`~dgp.core.models.flight.Flight` - and from the respective model representation within the FlightController + Remove the specified child primitive from the underlying + :obj:`~dgp.core.models.flight.Flight` and from the respective model + representation within the FlightController Parameters ---------- - child : Union[:obj:`~dgp.core.models.flight.FlightLine`, :obj:`~dgp.core.models.data.DataFile`] + uid : :obj:`OID` The child model object to be removed - row : int - The row number of the child's controller wrapper confirm : bool, optional - If True spawn a confirmation dialog requiring user input to confirm removal + If True spawn a confirmation dialog requiring user confirmation Returns ------- @@ -217,24 +206,24 @@ def remove_child(self, child: Union[FlightLine, DataFile], row: int, confirm: bo if child is not a :obj:`FlightLine` or :obj:`DataFile` """ - if type(child) not in self._control_map: - raise TypeError("Invalid child type supplied") + ctrl: Union[DataSetController, GravimeterController] = self.get_child(uid) + if type(ctrl) not in self._child_control_map.values(): + raise TypeError("Invalid child uid supplied. Invalid child type.") if confirm: # pragma: no cover if not helpers.confirm_action("Confirm Deletion", - "Are you sure you want to delete %s" % str(child), + "Are you sure you want to delete %s" % str(ctrl), self.get_parent().get_parent()): return False - self._flight.remove_child(child) - self._child_map[type(child)].removeRow(row) + self._flight.datasets.remove(ctrl.datamodel) + self._child_map[type(ctrl.datamodel)].removeRow(ctrl.row()) return True - def get_child(self, uid: Union[str, OID]) -> Union[FlightLineController, DataFileController, None]: + def get_child(self, uid: Union[OID, str]) -> DataSetController: """Retrieve a child controller by UIU A string base_uuid can be passed, or an :obj:`OID` object for comparison """ - # TODO: Should this also search datafiles? - for item in self._datasets.items(): + for item in self._datasets.items(): # type: DataSetController if item.uid == uid: return item diff --git a/dgp/core/controllers/flightline_controller.py b/dgp/core/controllers/flightline_controller.py deleted file mode 100644 index 8ad64cc..0000000 --- a/dgp/core/controllers/flightline_controller.py +++ /dev/null @@ -1,35 +0,0 @@ -# -*- coding: utf-8 -*- -from typing import Optional - -from PyQt5.QtCore import Qt -from PyQt5.QtGui import QStandardItem, QIcon - -from dgp.core.oid import OID -from dgp.core.controllers.controller_interfaces import IFlightController -from dgp.core.controllers.controller_mixins import AttributeProxy -from dgp.core.models.flight import FlightLine - - -class FlightLineController(QStandardItem, AttributeProxy): - - def __init__(self, flightline: FlightLine, *args): - super().__init__() - self._flightline = flightline - self.setData(flightline, Qt.UserRole) - self.setText(str(self._flightline)) - self.setIcon(QIcon(":/icons/AutosizeStretch_16x.png")) - - @property - def uid(self) -> OID: - return self._flightline.uid - - @property - def datamodel(self) -> FlightLine: - return self._flightline - - def update_line(self, start, stop, label: Optional[str] = None): - self._flightline.start = start - self._flightline.stop = stop - self._flightline.label = label - self.setText(str(self._flightline)) - diff --git a/dgp/core/controllers/project_containers.py b/dgp/core/controllers/project_containers.py index 3da8f41..bb1310a 100644 --- a/dgp/core/controllers/project_containers.py +++ b/dgp/core/controllers/project_containers.py @@ -28,9 +28,6 @@ def __init__(self, label: str, icon: str=None, inherit=False, **kwargs): self.setEditable(False) self._attributes = kwargs - def properties(self): - print(self.__class__.__name__) - @property def internal_model(self) -> QStandardItemModel: return self._model @@ -51,5 +48,3 @@ def removeRow(self, row: int): def items(self) -> Generator[QStandardItem, None, None]: return (self.child(i, 0) for i in range(self.rowCount())) - - diff --git a/dgp/core/controllers/project_controllers.py b/dgp/core/controllers/project_controllers.py index 247dde1..8dcee40 100644 --- a/dgp/core/controllers/project_controllers.py +++ b/dgp/core/controllers/project_controllers.py @@ -15,7 +15,8 @@ from dgp.core.file_loader import FileLoader from dgp.core.oid import OID -from dgp.core.controllers.controller_interfaces import IAirborneController, IFlightController +from dgp.core.controllers.controller_interfaces import (IAirborneController, IFlightController, IParent, + IDataSetController) from dgp.core.hdf5_manager import HDF5Manager from .flight_controller import FlightController from .gravimeter_controller import GravimeterController @@ -86,12 +87,12 @@ def __init__(self, project: AirborneProject): 'modify_date': (False, None) } - def validator(self, key: str): + def validator(self, key: str): # pragma: no cover if key in self._fields: return self._fields[key][1] return None - def writeable(self, key: str): + def writeable(self, key: str): # pragma: no cover if key in self._fields: return self._fields[key][0] return True @@ -118,14 +119,9 @@ def path(self) -> Path: return self._project.path @property - def menu_bindings(self): + def menu_bindings(self): # pragma: no cover return self._bindings - # TODO: Deprecate - @property - def hdf5store(self) -> Path: - return self.hdf5path - @property def hdf5path(self) -> Path: return self._project.path.joinpath("dgpdata.hdf5") @@ -228,36 +224,69 @@ def update(self): # pragma: no cover if self.model() is not None: self.model().project_changed.emit() - def _post_load(self, datafile: DataFile, data: DataFrame): # pragma: no cover + def _post_load(self, datafile: DataFile, dataset: IDataSetController, + data: DataFrame) -> None: # pragma: no cover + """ + This is a slot called upon successful loading of a DataFile by a + FileLoader Thread. + + Parameters + ---------- + datafile : :obj:`dgp.core.models.data.DataFile` + The DataFile reference object to be processed + data : DataFrame + The ingested pandas DataFrame to be dumped to the HDF5 store + + """ + # TODO: Insert DataFile into appropriate child + datafile.set_parent(dataset) if HDF5Manager.save_data(data, datafile, path=self.hdf5path): self.log.info("Data imported and saved to HDF5 Store") + dataset.add_datafile(datafile) return def load_file_dlg(self, datatype: DataTypes = DataTypes.GRAVITY, - destination: IFlightController = None): # pragma: no cover - # TODO: Move to dataset controller? - # How to get ref to parent window? Recursive search of parents until - # widget is found? - def load_data(datafile: DataFile, params: dict): - pprint(params) + flight: IFlightController = None, + dataset: IDataSetController = None) -> None: # pragma: no cover + """ + Project level dialog for importing/loading Gravity or Trajectory data + files. The Dialog generates a DataFile and a parameter map (dict) which + is passed along to a FileLoader thread to ingest the raw data-file. + On completion of the FileLoader, AirborneProjectController._post_load is + called, which saves the ingested data to the project's HDF5 file, and + adds the DataFile object to the relevant parent. + + Parameters + ---------- + datatype : DataTypes + + flight : IFlightController, optional + Set the default flight selected when launching the dialog + dataset : IDataSetController, optional + Set the default Dataset selected when launching the dialog + + + """ + def load_data(datafile: DataFile, params: dict, parent: IDataSetController): if datafile.group == 'gravity': method = read_at1a elif datafile.group == 'trajectory': method = import_trajectory else: - print("Unrecognized data group: " + datafile.group) + self.log.error("Unrecognized data group: " + datafile.group) return - loader = FileLoader(datafile.source_path, method, parent=self.get_parent_widget(), **params) - loader.completed.connect(functools.partial(self._post_load, datafile)) - # TODO: Connect completed to add_child method of the flight + loader = FileLoader(datafile.source_path, method, + parent=self.get_parent_widget(), **params) + loader.loaded.connect(functools.partial(self._post_load, datafile, + parent)) loader.start() dlg = DataImportDialog(self, datatype, parent=self.get_parent_widget()) - if destination is not None: - dlg.set_initial_flight(destination) + if flight is not None: + dlg.set_initial_flight(flight) dlg.load.connect(load_data) dlg.exec_() - def properties_dlg(self): + def properties_dlg(self): # pragma: no cover dlg = ProjectPropertiesDialog(self) dlg.exec_() diff --git a/dgp/core/file_loader.py b/dgp/core/file_loader.py index 333b127..b5d4df0 100644 --- a/dgp/core/file_loader.py +++ b/dgp/core/file_loader.py @@ -10,7 +10,7 @@ class FileLoader(QThread): - completed = pyqtSignal(DataFrame, Path) + loaded = pyqtSignal(DataFrame, Path) error = pyqtSignal(Exception) def __init__(self, path: Path, method: Callable, parent, **kwargs): @@ -29,6 +29,4 @@ def run(self): self.log.exception("Error loading datafile: %s" % str(self._path)) self.error.emit(e) else: - self.completed.emit(result, self._path) - - + self.loaded.emit(result, self._path) diff --git a/dgp/core/hdf5_manager.py b/dgp/core/hdf5_manager.py index 6808f98..c2d3d58 100644 --- a/dgp/core/hdf5_manager.py +++ b/dgp/core/hdf5_manager.py @@ -35,10 +35,6 @@ class HDF5Manager: log = logging.getLogger(__name__) _cache = {} - @staticmethod - def join_path(flightid, grpid, uid): - return '/'.join(map(str, ['', flightid, grpid, uid])) - @classmethod def save_data(cls, data: DataFrame, datafile: DataFile, path: Path) -> bool: """ @@ -73,7 +69,7 @@ def save_data(cls, data: DataFrame, datafile: DataFile, path: Path) -> bool: with HDFStore(str(path)) as hdf: try: hdf.put(datafile.hdfpath, data, format='fixed', data_columns=True) - except (IOError, PermissionError): + except (IOError, PermissionError): # pragma: no cover cls.log.exception("Exception writing file to HDF5 _store.") raise else: @@ -94,6 +90,7 @@ def load_data(cls, datafile: DataFile, path: Path) -> DataFrame: ---------- datafile : DataFile path : Path + Path to the HDF5 file where datafile is stored Returns ------- @@ -112,11 +109,14 @@ def load_data(cls, datafile: DataFile, path: Path) -> DataFrame: cls.log.debug("Loading data %s from hdf5 _store.", datafile.hdfpath) try: - with HDFStore(str(path)) as hdf: + with HDFStore(str(path), mode='r') as hdf: data = hdf.get(datafile.hdfpath) - except Exception as e: + except OSError as e: + cls.log.exception(e) + raise FileNotFoundError from e + except KeyError as e: cls.log.exception(e) - raise IOError("Could not load DataFrame from path: %s" % datafile.hdfpath) + raise # Cache the data cls._cache[datafile] = data @@ -132,16 +132,16 @@ def delete_data(cls, file: DataFile, path: Path) -> bool: # within pytables - so the inspection warning can be safely ignored @classmethod - def get_node_attrs(cls, nodepath: str, path: Path) -> list: - with tables.open_file(str(path)) as hdf: + def list_node_attrs(cls, nodepath: str, path: Path) -> list: + with tables.open_file(str(path), mode='r') as hdf: try: return hdf.get_node(nodepath)._v_attrs._v_attrnames except tables.exceptions.NoSuchNodeError: - raise ValueError("Specified path %s does not exist.", path) + raise KeyError("Specified path %s does not exist.", path) @classmethod def _get_node_attr(cls, nodepath, attrname, path: Path): - with tables.open_file(str(path)) as hdf: + with tables.open_file(str(path), mode='r') as hdf: try: return hdf.get_node_attr(nodepath, attrname) except AttributeError: @@ -157,3 +157,8 @@ def _set_node_attr(cls, nodepath: str, attrname: str, value: Any, path: Path): raise KeyError("Node %s does not exist", nodepath) else: return True + + @classmethod + def clear_cache(cls): + del cls._cache + cls._cache = {} diff --git a/dgp/core/models/dataset.py b/dgp/core/models/dataset.py index 151575c..e929a68 100644 --- a/dgp/core/models/dataset.py +++ b/dgp/core/models/dataset.py @@ -1,6 +1,6 @@ # -*- coding: utf-8 -*- from pathlib import Path -from typing import List +from typing import List, Union from datetime import datetime import pandas as pd @@ -39,7 +39,10 @@ def stop(self, value: float) -> None: self._stop = value def __str__(self): - return "Segment <{:%H:%M} -> {:%H:%M}>".format(self.start, self.stop) + return f'<{self.start:%H:%M} - {self.stop:%H:%M}>' + + def __repr__(self): + return f'' class DataSet: @@ -48,6 +51,19 @@ class DataSet: DataSets can have segments defined, e.g. for an Airborne project these would be Flight Lines. + Parameters + ---------- + path : Path, optional + File system path to the HDF5 file where data from this dataset will reside + gravity : :obj:`DataFile`, optional + Optional Gravity DataFile to initialize this DataSet with + trajectory : :obj:`DataFile`, optional + Optional Trajectory DataFile to initialize this DataSet with + segments : List[:obj:`DataSegment`], optional + Optional list of DataSegment's to initialize this DataSet with + uid + parent + Notes ----- Once this class is implemented, DataFiles will be created and added only to @@ -60,58 +76,50 @@ def __init__(self, path: Path = None, gravity: DataFile = None, self._parent = parent self.uid = uid or OID(self) self.uid.set_pointer(self) + self.segments = segments or [] self._path: Path = path - self._active: bool = False - self._aligned: bool = False - self._segments = segments or [] - - self._gravity = gravity - if self._gravity is not None: - self._gravity.set_parent(self) - self._trajectory = trajectory - if self._trajectory is not None: - self._trajectory.set_parent(self) - def _align_frames(self): - pass + self.gravity = gravity + if self.gravity is not None: + self.gravity.set_parent(self) + self.trajectory = trajectory + if self.trajectory is not None: + self.trajectory.set_parent(self) @property - def gravity(self) -> DataFile: - return self._gravity + def gravity_frame(self) -> Union[pd.DataFrame, None]: + try: + return HDF5Manager.load_data(self.gravity, self._path) + except Exception: + return None @property - def trajectory(self) -> DataFile: - return self._trajectory + def trajectory_frame(self) -> Union[pd.DataFrame, None]: + try: + return HDF5Manager.load_data(self.trajectory, self._path) + except Exception: + return None @property - def dataframe(self) -> pd.DataFrame: + def dataframe(self) -> Union[pd.DataFrame, None]: """Return the concatenated DataFrame of gravity and trajectory data.""" - grav_data = HDF5Manager.load_data(self.gravity, self._path) - traj_data = HDF5Manager.load_data(self.trajectory, self._path) - frame: pd.DataFrame = pd.concat([grav_data, traj_data]) - # Or use align_frames? - return frame - - def add_segment(self, segment: DataSegment): - segment.sequence = len(self._segments) - self._segments.append(segment) - - def get_segment(self, uid: OID): + # TODO: What to do if grav or traj are None? + try: + grav_data = HDF5Manager.load_data(self.gravity, self._path) + traj_data = HDF5Manager.load_data(self.trajectory, self._path) + return pd.concat([grav_data, traj_data]) + except OSError: + return None + except AttributeError: + return None - pass - - def remove_segment(self, uid: OID): - # self._segments.remove() - pass - - def update_segment(self): - pass - - def set_active(self, active: bool = True): - self._active = bool(active) + @property + def parent(self): + return self._parent - def set_parent(self, parent): - self._parent = parent + @parent.setter + def parent(self, value): + self._parent = value # TODO: Implement align_frames functionality as below diff --git a/dgp/core/models/flight.py b/dgp/core/models/flight.py index 60505cf..87ac98b 100644 --- a/dgp/core/models/flight.py +++ b/dgp/core/models/flight.py @@ -2,61 +2,24 @@ from datetime import datetime from typing import List, Optional, Union -from dgp.core.models.data import DataFile from dgp.core.models.dataset import DataSet from dgp.core.models.meter import Gravimeter from dgp.core.oid import OID -class FlightLine: - __slots__ = ('uid', 'parent', 'label', 'sequence', '_start', '_stop') - - def __init__(self, start: float, stop: float, sequence: int, - label: Optional[str] = "", uid: Optional[OID] = None): - self.uid = uid or OID(self) - self.uid.set_pointer(self) - self.parent = None - self.label = label - self.sequence = sequence - self._start = start - self._stop = stop - - @property - def start(self) -> datetime: - return datetime.fromtimestamp(self._start) - - @start.setter - def start(self, value: float) -> None: - self._start = value - - @property - def stop(self) -> datetime: - return datetime.fromtimestamp(self._stop) - - @stop.setter - def stop(self, value: float) -> None: - self._stop = value - - def set_parent(self, parent): - self.parent = parent - - def __str__(self): - return 'Line {} {:%H:%M} -> {:%H:%M}'.format(self.sequence, self.start, self.stop) - - class Flight: """ Version 2 Flight Class - Designed to be de-coupled from the view implementation Define a Flight class used to record and associate data with an entire survey flight (takeoff -> landing) """ - __slots__ = ('uid', 'name', '_flight_lines', '_data_files', '_datasets', '_meter', - 'date', 'notes', 'sequence', 'duration', 'parent') + __slots__ = ('uid', 'name', 'datasets', 'meter', + 'date', 'notes', 'sequence', 'duration', '_parent') def __init__(self, name: str, date: Optional[datetime] = None, notes: Optional[str] = None, sequence: int = 0, duration: int = 0, meter: str = None, uid: Optional[OID] = None, **kwargs): - self.parent = None + self._parent = None self.uid = uid or OID(self, name) self.uid.set_pointer(self) self.name = name @@ -65,51 +28,16 @@ def __init__(self, name: str, date: Optional[datetime] = None, notes: Optional[s self.sequence = sequence self.duration = duration - self._flight_lines = kwargs.get('flight_lines', []) # type: List[FlightLine] - self._data_files = kwargs.get('data_files', []) # type: List[DataFile] - self._datasets = kwargs.get('datasets', []) # type: List[DataSet] - self._meter = meter + self.datasets = kwargs.get('datasets', []) # type: List[DataSet] + self.meter: Gravimeter = meter @property - def data_files(self) -> List[DataFile]: - return self._data_files - - @property - def flight_lines(self) -> List[FlightLine]: - return self._flight_lines - - def add_child(self, child: Union[FlightLine, DataFile, DataSet, Gravimeter]) -> None: - # TODO: Is add/remove child necesarry or useful, just allow direct access to the underlying lists? - if child is None: - return - if isinstance(child, FlightLine): - self._flight_lines.append(child) - elif isinstance(child, DataFile): - self._data_files.append(child) - elif isinstance(child, DataSet): - self._datasets.append(child) - elif isinstance(child, Gravimeter): # pragma: no cover - # TODO: Implement this properly - self._meter = child.uid.base_uuid - else: - raise TypeError("Invalid child type supplied: <%s>" % str(type(child))) - child.set_parent(self) - - def remove_child(self, child: Union[FlightLine, DataFile, OID]) -> bool: - if isinstance(child, OID): - child = child.reference - if isinstance(child, FlightLine): - child.set_parent(None) - self._flight_lines.remove(child) - elif isinstance(child, DataFile): - child.set_parent(None) - self._data_files.remove(child) - else: - return False - return True + def parent(self): + return self._parent - def set_parent(self, parent): - self.parent = parent + @parent.setter + def parent(self, value): + self._parent = value def __str__(self) -> str: return self.name diff --git a/dgp/core/models/meter.py b/dgp/core/models/meter.py index 4cd7c8f..11d5916 100644 --- a/dgp/core/models/meter.py +++ b/dgp/core/models/meter.py @@ -26,7 +26,7 @@ class Gravimeter: def __init__(self, name: str, config: dict = None, uid: Optional[OID] = None, **kwargs): - self.parent = None + self._parent = None self.uid = uid or OID(self) self.uid.set_pointer(self) self.type = "AT1A" @@ -35,8 +35,13 @@ def __init__(self, name: str, config: dict = None, uid: Optional[OID] = None, ** self.config = config self.attributes = kwargs.get('attributes', {}) - def set_parent(self, parent): - self.parent = parent + @property + def parent(self): + return self._parent + + @parent.setter + def parent(self, value): + self._parent = value @staticmethod def read_config(path: Path) -> Dict[str, Union[str, int, float]]: diff --git a/dgp/core/models/project.py b/dgp/core/models/project.py index 9636ac9..d5dca3a 100644 --- a/dgp/core/models/project.py +++ b/dgp/core/models/project.py @@ -13,11 +13,16 @@ from typing import Optional, List, Any, Dict, Union from dgp.core.oid import OID -from .flight import Flight, FlightLine, DataFile +from .flight import Flight from .meter import Gravimeter +from .dataset import DataSet, DataSegment +from .data import DataFile PROJECT_FILE_NAME = 'dgp.json' -project_entities = {'Flight': Flight, 'FlightLine': FlightLine, 'DataFile': DataFile, +project_entities = {'Flight': Flight, + 'DataSet': DataSet, + 'DataFile': DataFile, + 'DataSegment': DataSegment, 'Gravimeter': Gravimeter} @@ -107,7 +112,7 @@ def decode(self, s, _w=json.decoder.WHITESPACE.match): # Re-link parents & children for child_uid, parent_uid in self._child_parent_map.items(): child = self._registry[child_uid] - child.set_parent(self._registry.get(parent_uid, None)) + child.parent = self._registry.get(parent_uid, None) return decoded @@ -251,7 +256,6 @@ def __getitem__(self, item): # Protected utility methods def _modify(self): """Set the modify_date to now""" - print("Updating project modify time") self._modify_date = datetime.datetime.utcnow() # Serialization/De-Serialization methods @@ -263,14 +267,10 @@ def to_json(self, to_file=False, indent=None) -> Union[str, bool]: # TODO: Dump file to a temp file, then if successful overwrite the original # Else an error in the serialization process can corrupt the entire project if to_file: - try: - with self.path.joinpath(self._projectfile).open('w') as fp: - json.dump(self, fp, cls=ProjectEncoder, indent=indent) - except IOError: - raise - else: - # pprint(json.dumps(self, cls=ProjectEncoder, indent=2)) - return True + with self.path.joinpath(self._projectfile).open('w') as fp: + json.dump(self, fp, cls=ProjectEncoder, indent=indent) + # pprint(json.dumps(self, cls=ProjectEncoder, indent=2)) + return True return json.dumps(self, cls=ProjectEncoder, indent=indent) @@ -289,7 +289,7 @@ def add_child(self, child): self._modify() else: super().add_child(child) - child.set_parent(self) + child.parent = self def get_child(self, child_id: OID) -> Union[Flight, Gravimeter]: try: diff --git a/dgp/gui/dialogs/data_import_dialog.py b/dgp/gui/dialogs/data_import_dialog.py index 71bcbb7..b77a3e2 100644 --- a/dgp/gui/dialogs/data_import_dialog.py +++ b/dgp/gui/dialogs/data_import_dialog.py @@ -6,12 +6,14 @@ from pathlib import Path from typing import Union, Optional, List -from PyQt5.QtCore import Qt, pyqtSlot, pyqtSignal, QDate -from PyQt5.QtGui import QStandardItemModel, QStandardItem, QIcon +from PyQt5.QtCore import Qt, pyqtSlot, pyqtSignal, QDate, QRegExp +from PyQt5.QtGui import QStandardItemModel, QStandardItem, QIcon, QRegExpValidator from PyQt5.QtWidgets import QDialog, QFileDialog, QListWidgetItem, QCalendarWidget, QWidget, QFormLayout import dgp.core.controllers.gravimeter_controller as mtr -from dgp.core.controllers.controller_interfaces import IAirborneController, IFlightController +from dgp.core.oid import OID +from dgp.core.controllers.dataset_controller import DataSetController +from dgp.core.controllers.controller_interfaces import IAirborneController, IFlightController, IDataSetController from dgp.core.models.data import DataFile from dgp.core.types.enumerations import DataTypes from dgp.gui.ui.data_import_dialog import Ui_DataImportDialog @@ -23,7 +25,7 @@ class DataImportDialog(QDialog, Ui_DataImportDialog, FormValidator): - load = pyqtSignal(DataFile, dict) + load = pyqtSignal(DataFile, dict, DataSetController) def __init__(self, project: IAirborneController, datatype: DataTypes, base_path: str = None, @@ -64,13 +66,12 @@ def __init__(self, project: IAirborneController, self.qlw_datatype.addItem(self._trajectory) self.qlw_datatype.setCurrentRow(self._type_map.get(datatype, 0)) - self._flight_model = self.project.flight_model # type: QStandardItemModel self.qcb_flight.currentIndexChanged.connect(self._flight_changed) - self.qcb_flight.setModel(self._flight_model) + self.qcb_flight.setModel(self.project.flight_model) # Dataset support - experimental - self._dataset_model = QStandardItemModel() - self.qcb_dataset.setModel(self._dataset_model) + # self._dataset_model = QStandardItemModel() + # self.qcb_dataset.setModel(self._dataset_model) self.qde_date.setDate(datetime.today()) self._calendar = QCalendarWidget() @@ -111,10 +112,11 @@ def __init__(self, project: IAirborneController, # Configure Validators self.qle_filepath.setValidator(FileExistsValidator()) + self.qcb_dataset.setValidator(QRegExpValidator(QRegExp("[A-Za-z]\+"))) def set_initial_flight(self, flight: IFlightController): - for i in range(self._flight_model.rowCount()): # pragma: no branch - child = self._flight_model.item(i, 0) + for i in range(self.qcb_flight.model().rowCount()): # pragma: no branch + child = self.qcb_flight.model().item(i, 0) if child.uid == flight.uid: # pragma: no branch self.qcb_flight.setCurrentIndex(i) break @@ -133,9 +135,15 @@ def project(self) -> IAirborneController: @property def flight(self) -> IFlightController: - fc = self._flight_model.item(self.qcb_flight.currentIndex()) + fc = self.qcb_flight.model().item(self.qcb_flight.currentIndex()) return self.project.get_child(fc.uid) + @property + def dataset(self) -> IDataSetController: + model: QStandardItemModel = self.qcb_dataset.model() + dsc: IDataSetController = model.item(self.qcb_dataset.currentIndex()) + return self.flight.get_child(dsc.uid) + @property def file_path(self) -> Union[Path, None]: if not len(self.qle_filepath.text()): @@ -156,15 +164,19 @@ def date(self) -> datetime: return datetime(_date.year(), _date.month(), _date.day()) def accept(self): # pragma: no cover - if not self.validate(): + if not self.validate(empty_combo_ok=False): + print("Dialog input not valid") return - if self._load_file(): - if self.qchb_copy_file.isChecked(): - self._copy_file() - return super().accept() + file = DataFile(self.datatype.value.lower(), date=self.date, + source_path=self.file_path, name=self.qle_rename.text()) + param_map = self._params_map[self.datatype] + params = {key: value() for key, value in param_map.items()} + self.load.emit(file, params, self.dataset) - raise TypeError("Unhandled DataType supplied to import dialog: %s" % str(self.datatype)) + if self.qchb_copy_file.isChecked(): + self._copy_file() + return super().accept() def _copy_file(self): # pragma: no cover src = self.file_path @@ -178,16 +190,6 @@ def _copy_file(self): # pragma: no cover except IOError: self.log.exception("Unable to copy source file to project directory.") - def _load_file(self): - file = DataFile(self.datatype.value.lower(), date=self.date, - source_path=self.file_path, name=self.qle_rename.text()) - param_map = self._params_map[self.datatype] - # Evaluate and build params dict - params = {key: value() for key, value in param_map.items()} - self.flight.add_child(file) - self.load.emit(file, params) - return True - def _set_date(self): self.qde_date.setDate(self.flight.get_attr('date')) @@ -249,8 +251,7 @@ def _traj_timeformat_changed(self, index: int): # pragma: no cover @pyqtSlot(int, name='_flight_changed') def _flight_changed(self, row: int): - index = self._flight_model.index(row, 0) - flt: IFlightController = self._flight_model.itemFromIndex(index) - # ds_model = flt.dataset_model + flt: IFlightController = self.qcb_flight.model().item(row, 0) + self.qcb_dataset.setModel(flt.datasets) diff --git a/dgp/gui/dialogs/dialog_mixins.py b/dgp/gui/dialogs/dialog_mixins.py index fbb7f0d..d42ad85 100644 --- a/dgp/gui/dialogs/dialog_mixins.py +++ b/dgp/gui/dialogs/dialog_mixins.py @@ -3,10 +3,10 @@ from PyQt5.QtGui import QValidator, QRegExpValidator, QIntValidator, QDoubleValidator from PyQt5.QtWidgets import (QFormLayout, QWidget, QLineEdit, QLabel, QHBoxLayout, QLayoutItem, - QVBoxLayout) + QVBoxLayout, QComboBox) __all__ = ['FormValidator', 'VALIDATION_ERR_MSG'] -VALIDATION_ERR_MSG = "Ensure all marked fields are completed." +VALIDATION_ERR_MSG = "Ensure all marked fields are loaded." class FormValidator: @@ -32,7 +32,7 @@ class FormValidator: """ ERR_STYLE = "QLabel { color: red; }" - _CAN_VALIDATE = (QLineEdit,) + _CAN_VALIDATE = (QLineEdit, QComboBox) @property def validation_targets(self) -> List[QFormLayout]: @@ -43,7 +43,16 @@ def validation_targets(self) -> List[QFormLayout]: def validation_error(self) -> QLabel: return QLabel() - def _validate_field(self, widget: QWidget, label: QLabel) -> bool: + def _validate_field(self, widget: QWidget, label: QLabel, check_combo=False) -> bool: + if check_combo and isinstance(widget, QComboBox): + if not len(widget.currentText()) > 0: + label.setStyleSheet(self.ERR_STYLE) + label.setToolTip("ComboBox must have a value selected.") + return False + else: + label.setStyleSheet("") + return True + validator: QValidator = widget.validator() if widget.hasAcceptableInput(): label.setStyleSheet("") @@ -62,7 +71,7 @@ def _validate_field(self, widget: QWidget, label: QLabel) -> bool: label.setToolTip(reason) return False - def _validate_form(self, form: QFormLayout): + def _validate_form(self, form: QFormLayout, check_combo=False): res = [] for i in range(form.rowCount()): try: @@ -79,19 +88,23 @@ def _validate_form(self, form: QFormLayout): _field = layout.itemAt(j) _widget: QWidget = _field.widget() if isinstance(_widget, self._CAN_VALIDATE): - if _widget.validator() or _widget.inputMask(): + if _widget.validator() or (hasattr(_widget, 'inputMask') and _widget.inputMask()): + field = _field + break + elif check_combo and isinstance(_widget, QComboBox): field = _field break - if field.widget() is not None and isinstance(field.widget(), self._CAN_VALIDATE): - res.append(self._validate_field(field.widget(), label)) + widget = field.widget() + if widget is not None and isinstance(widget, self._CAN_VALIDATE): + res.append(self._validate_field(widget, label, check_combo)) return all(result for result in res) - def validate(self, notify=True) -> bool: + def validate(self, notify=True, empty_combo_ok=True) -> bool: res = [] for form in self.validation_targets: - res.append(self._validate_form(form)) + res.append(self._validate_form(form, check_combo=not empty_combo_ok)) valid = all(result for result in res) if not valid and notify: self.validation_error.setText(VALIDATION_ERR_MSG) diff --git a/dgp/gui/workspace.py b/dgp/gui/workspace.py index c4ff369..2fae052 100644 --- a/dgp/gui/workspace.py +++ b/dgp/gui/workspace.py @@ -28,7 +28,8 @@ def __init__(self, flight: FlightController, parent=None, flags=0, **kwargs): self._layout.addWidget(self._workspace) # Define Sub-Tabs within Flight space e.g. Plot, Transform, Maps - self._plot_tab = PlotTab(label="Plot", flight=flight, dataset=flight.get) + self._plot_tab = PlotTab(label="Plot", flight=flight) + self._workspace.addTab(self._plot_tab, "Plot") self._transform_tab = TransformTab("Transforms", flight) diff --git a/tests/conftest.py b/tests/conftest.py new file mode 100644 index 0000000..c9543a7 --- /dev/null +++ b/tests/conftest.py @@ -0,0 +1,69 @@ +# -*- coding: utf-8 -*- +from datetime import datetime +from pathlib import Path + +import pandas as pd +import pytest + +from dgp.core.hdf5_manager import HDF5_NAME +from dgp.core.models.data import DataFile +from dgp.core.models.dataset import DataSegment, DataSet +from dgp.core.models.flight import Flight +from dgp.core.models.meter import Gravimeter +from dgp.core.models.project import AirborneProject +from dgp.core.oid import OID +from lib.gravity_ingestor import read_at1a +from lib.trajectory_ingestor import import_trajectory + + +def get_ts(offset=0): + return datetime.now().timestamp() + offset + + +@pytest.fixture() +def project(tmpdir): + """This fixture constructs a project model with a flight, gravimeter, + DataSet (and its children - DataFile/DataSegment) for testing the serialization + and de-serialization of a fleshed out project. + """ + base_dir = Path(tmpdir) + prj = AirborneProject(name="TestProject", path=base_dir.joinpath("prj"), + description="Description of TestProject") + prj.path.mkdir() + + flt1 = Flight("Flt1", sequence=0, duration=4) + flt2 = Flight("Flt2", sequence=1, duration=6) + + mtr = Gravimeter.from_ini(Path('tests').joinpath('at1m.ini'), name="AT1A-X") + + grav1 = DataFile('gravity', datetime.now(), base_dir.joinpath('gravity1.dat')) + traj1 = DataFile('trajectory', datetime.now(), base_dir.joinpath('gps1.dat')) + seg1 = DataSegment(OID(), get_ts(0), get_ts(1500), 0, "seg1") + seg2 = DataSegment(OID(), get_ts(1501), get_ts(3000), 1, "seg2") + + dataset1 = DataSet(prj.path.joinpath('hdfstore.hdf5'), grav1, traj1, + [seg1, seg2]) + + flt1.datasets.append(dataset1) + prj.add_child(mtr) + prj.add_child(flt1) + prj.add_child(flt2) + return prj + + +@pytest.fixture(scope='module') +def hdf5file(tmpdir_factory) -> Path: + file = Path(tmpdir_factory.mktemp("dgp")).joinpath(HDF5_NAME) + file.touch(exist_ok=True) + return file + + +@pytest.fixture(scope='session') +def gravdata() -> pd.DataFrame: + return read_at1a('tests/sample_gravity.csv') + + +@pytest.fixture(scope='session') +def gpsdata() -> pd.DataFrame: + return import_trajectory('tests/sample_trajectory.txt', timeformat='hms', + skiprows=1) diff --git a/tests/test_controllers.py b/tests/test_controllers.py new file mode 100644 index 0000000..8afb763 --- /dev/null +++ b/tests/test_controllers.py @@ -0,0 +1,367 @@ +# -*- coding: utf-8 -*- +from datetime import datetime +from pathlib import Path + +import pytest +import pandas as pd +from PyQt5.QtCore import Qt +from PyQt5.QtGui import QStandardItemModel, QStandardItem +from pandas import DataFrame + +from dgp.core.oid import OID +from dgp.core.hdf5_manager import HDF5Manager +from dgp.core.models.dataset import DataSet, DataSegment +from dgp.core.controllers.project_controllers import AirborneProjectController +from dgp.core.models.project import AirborneProject +from dgp.core.controllers.controller_mixins import AttributeProxy +from dgp.core.controllers.controller_interfaces import IChild, IMeterController, IParent +from dgp.core.controllers.gravimeter_controller import GravimeterController +from dgp.core.controllers.dataset_controller import (DataSetController, + DataSegmentController, + ACTIVE_COLOR, + INACTIVE_COLOR) +from dgp.core.models.meter import Gravimeter +from dgp.core.models.data import DataFile +from dgp.core.controllers.flight_controller import FlightController +from dgp.core.models.flight import Flight +from .context import APP + + +def test_attribute_proxy(tmpdir): + _name = "TestPrj" + _path = Path(tmpdir) + prj = AirborneProject(name=_name, path=_path) + prj_ctrl = AirborneProjectController(prj) + + assert _name == prj_ctrl.get_attr('name') + + # Test get_attr on non existent attribute + with pytest.raises(AttributeError): + prj_ctrl.get_attr('not_an_attr') + + # Test attribute write protect + with pytest.raises(AttributeError): + prj_ctrl.set_attr('path', Path('.')) + + # Test attribute validation + with pytest.raises(ValueError): + prj_ctrl.set_attr('name', '1prj') + + prj_ctrl.set_attr('name', 'ValidPrjName') + + +def test_gravimeter_controller(tmpdir): + prj = AirborneProjectController(AirborneProject(name="TestPrj", path=Path(tmpdir))) + meter = Gravimeter('AT1A-Test') + meter_ctrl = GravimeterController(meter) + + assert isinstance(meter_ctrl, IChild) + assert isinstance(meter_ctrl, IMeterController) + assert isinstance(meter_ctrl, AttributeProxy) + assert not isinstance(meter_ctrl, IParent) + + assert meter == meter_ctrl.data(Qt.UserRole) + + with pytest.raises(AttributeError): + meter_ctrl.set_attr('invalid_attr', 1234) + + assert 'AT1A-Test' == meter_ctrl.get_attr('name') + assert meter_ctrl.get_parent() is None + meter_ctrl.set_parent(prj) + assert prj == meter_ctrl.get_parent() + + assert hash(meter_ctrl) + + meter_ctrl_clone = meter_ctrl.clone() + assert meter == meter_ctrl_clone.datamodel + + assert "AT1A-Test" == meter_ctrl.data(Qt.DisplayRole) + meter_ctrl.set_attr('name', "AT1A-New") + assert "AT1A-New" == meter_ctrl.data(Qt.DisplayRole) + + +def test_flight_controller(project: AirborneProject): + prj_ctrl = AirborneProjectController(project) + flight = Flight('Test-Flt-1') + data0 = DataFile('trajectory', datetime(2018, 5, 10), Path('./data0.dat')) + data1 = DataFile('gravity', datetime(2018, 5, 15), Path('./data1.dat')) + dataset = DataSet(prj_ctrl.hdf5path, data1, data0) + # dataset.set_active(True) + flight.datasets.append(dataset) + + _traj_data = [0, 1, 5, 9] + _grav_data = [2, 8, 1, 0] + # Load test data into temporary project HDFStore + HDF5Manager.save_data(DataFrame(_traj_data), data0, path=prj_ctrl.hdf5path) + HDF5Manager.save_data(DataFrame(_grav_data), data1, path=prj_ctrl.hdf5path) + + fc = prj_ctrl.add_child(flight) + assert hash(fc) + assert str(fc) == str(flight) + assert not fc.is_active() + prj_ctrl.set_active_child(fc) + assert fc.is_active() + assert flight.uid == fc.uid + assert flight.name == fc.data(Qt.DisplayRole) + + dsc = fc.get_child(dataset.uid) + assert isinstance(dsc, DataSetController) + assert dsc == fc.get_active_dataset() + + dataset2 = DataSet(prj_ctrl.hdf5path) + dsc2 = fc.add_child(dataset2) + assert isinstance(dsc2, DataSetController) + + with pytest.raises(TypeError): + fc.add_child({1: "invalid child"}) + + with pytest.raises(TypeError): + fc.set_active_dataset("not a child") + + fc.set_parent(None) + + with pytest.raises(TypeError): + fc.remove_child("Not a real child", confirm=False) + + fc.remove_child(dataset2.uid, confirm=False) + + +def test_airborne_project_controller(project): + flt0 = Flight("Flt0") + mtr0 = Gravimeter("AT1A-X") + project.add_child(flt0) + project.add_child(mtr0) + + assert 3 == len(project.flights) + assert 2 == len(project.gravimeters) + + project_ctrl = AirborneProjectController(project) + assert project == project_ctrl.datamodel + assert project_ctrl.path == project.path + + project_ctrl.set_parent_widget(APP) + assert APP == project_ctrl.get_parent_widget() + + flight = Flight("Flt1") + flight2 = Flight("Flt2") + meter = Gravimeter("AT1A-10") + + fc = project_ctrl.add_child(flight) + assert isinstance(fc, FlightController) + assert flight in project.flights + mc = project_ctrl.add_child(meter) + assert isinstance(mc, GravimeterController) + assert meter in project.gravimeters + + with pytest.raises(ValueError): + project_ctrl.add_child("Invalid Child Object (Str)") + + assert project == project_ctrl.data(Qt.UserRole) + assert project.name == project_ctrl.data(Qt.DisplayRole) + assert str(project.path) == project_ctrl.data(Qt.ToolTipRole) + assert project.uid == project_ctrl.uid + + assert isinstance(project_ctrl.meter_model, QStandardItemModel) + assert isinstance(project_ctrl.flight_model, QStandardItemModel) + + assert project_ctrl.get_active_child() is None + project_ctrl.set_active_child(fc) + assert fc == project_ctrl.get_active_child() + with pytest.raises(ValueError): + project_ctrl.set_active_child(mc) + + project_ctrl.add_child(flight2) + + fc2 = project_ctrl.get_child(flight2.uid) + assert isinstance(fc2, FlightController) + assert flight2 == fc2.datamodel + + assert 5 == project_ctrl.flights.rowCount() + project_ctrl.remove_child(flight2, fc2.row(), confirm=False) + assert 4 == project_ctrl.flights.rowCount() + assert project_ctrl.get_child(fc2.uid) is None + + assert 3 == project_ctrl.meters.rowCount() + project_ctrl.remove_child(meter, mc.row(), confirm=False) + assert 2 == project_ctrl.meters.rowCount() + + with pytest.raises(ValueError): + project_ctrl.remove_child("Not a child", 2) + + jsons = project_ctrl.save(to_file=False) + assert isinstance(jsons, str) + + +def test_dataset_controller(tmpdir): + """Test DataSet controls + Load data from HDF5 Store + Behavior when incomplete (no grav or traj) + """ + hdf = Path(tmpdir).joinpath('test.hdf5') + prj = AirborneProject(name="TestPrj", path=Path(tmpdir)) + flt = Flight("TestFlt") + grav_file = DataFile('gravity', datetime.now(), Path(tmpdir).joinpath('gravity.dat')) + traj_file = DataFile('trajectory', datetime.now(), Path(tmpdir).joinpath('trajectory.txt')) + ds = DataSet(hdf, grav_file, traj_file) + seg0 = DataSegment(OID(), datetime.now().timestamp(), datetime.now().timestamp() + 5000, 0) + ds.segments.append(seg0) + + flt.datasets.append(ds) + prj.add_child(flt) + + prj_ctrl = AirborneProjectController(prj) + fc0 = prj_ctrl.get_child(flt.uid) + dsc = fc0.get_child(ds.uid) + assert 1 == dsc._segments.rowCount() + + assert isinstance(dsc, DataSetController) + assert fc0 == dsc.get_parent() + assert grav_file == dsc.get_datafile(grav_file.group).datamodel + assert traj_file == dsc.get_datafile(traj_file.group).datamodel + + grav1_file = DataFile('gravity', datetime.now(), Path(tmpdir).joinpath('gravity2.dat')) + dsc.add_datafile(grav1_file) + assert grav1_file == dsc.get_datafile(grav1_file.group).datamodel + + traj1_file = DataFile('trajectory', datetime.now(), Path(tmpdir).joinpath('traj2.txt')) + dsc.add_datafile(traj1_file) + assert traj1_file == dsc.get_datafile(traj1_file.group).datamodel + + invl_file = DataFile('marine', datetime.now(), Path(tmpdir)) + with pytest.raises(TypeError): + dsc.add_datafile(invl_file) + + with pytest.raises(KeyError): + dsc.get_datafile('marine') + + # Test Data Segment Features + _seg_oid = OID(tag="seg1") + _seg1_start = datetime.now().timestamp() + _seg1_stop = datetime.now().timestamp() + 1500 + seg1_ctrl = dsc.add_segment(_seg_oid, _seg1_start, _seg1_stop, label="seg1") + seg1: DataSegment = seg1_ctrl.datamodel + assert datetime.fromtimestamp(_seg1_start) == seg1.start + assert datetime.fromtimestamp(_seg1_stop) == seg1.stop + assert "seg1" == seg1.label + + assert seg1_ctrl == dsc.get_segment(_seg_oid) + assert isinstance(seg1_ctrl, DataSegmentController) + assert "seg1" == seg1_ctrl.get_attr('label') + assert _seg_oid == seg1_ctrl.uid + + assert 2 == len(ds.segments) + assert ds.segments[1] == seg1_ctrl.datamodel + assert ds.segments[1] == seg1_ctrl.data(Qt.UserRole) + + # Segment updates + _new_start = datetime.now().timestamp() + 1500 + _new_stop = datetime.now().timestamp() + 3600 + dsc.update_segment(seg1.uid, _new_start, _new_stop) + assert datetime.fromtimestamp(_new_start) == seg1.start + assert datetime.fromtimestamp(_new_stop) == seg1.stop + assert "seg1" == seg1.label + + dsc.update_segment(seg1.uid, label="seg1label") + assert "seg1label" == seg1.label + + invalid_uid = OID() + assert dsc.get_segment(invalid_uid) is None + with pytest.raises(KeyError): + dsc.remove_segment(invalid_uid) + with pytest.raises(KeyError): + dsc.update_segment(invalid_uid, label="RaiseError") + + assert 2 == len(ds.segments) + dsc.remove_segment(seg1.uid) + assert 1 == len(ds.segments) + assert 1 == dsc._segments.rowCount() + + # Test Active/Inactive setting and visual effects + assert not dsc.active + assert INACTIVE_COLOR == dsc.background().color().name() + dsc.active = True + assert ACTIVE_COLOR == dsc.background().color().name() + dsc.active = False + assert INACTIVE_COLOR == dsc.background().color().name() + + +def test_dataset_datafiles(project: AirborneProject): + prj_ctrl = AirborneProjectController(project) + flt_ctrl = prj_ctrl.get_child(project.flights[0].uid) + ds_ctrl = flt_ctrl.get_child(flt_ctrl.datamodel.datasets[0].uid) + + grav_file = ds_ctrl.datamodel.gravity + grav_file_ctrl = ds_ctrl.get_datafile('gravity') + gps_file = ds_ctrl.datamodel.trajectory + gps_file_ctrl = ds_ctrl.get_datafile('trajectory') + + assert grav_file.uid == grav_file_ctrl.uid + assert ds_ctrl == grav_file_ctrl.dataset + assert grav_file.group == grav_file_ctrl.group + + assert gps_file.uid == gps_file_ctrl.uid + assert ds_ctrl == gps_file_ctrl.dataset + assert gps_file.group == gps_file_ctrl.group + + +def test_dataset_reparenting(project: AirborneProject): + # Test reassignment of DataSet to another Flight + # Note: FlightController automatically adds empty DataSet if Flight has None + prj_ctrl = AirborneProjectController(project) + flt1ctrl = prj_ctrl.get_child(project.flights[0].uid) + flt2ctrl = prj_ctrl.get_child(project.flights[1].uid) + dsctrl = flt1ctrl.get_child(flt1ctrl.datamodel.datasets[0].uid) + assert isinstance(dsctrl, DataSetController) + + assert 1 == len(flt1ctrl.datamodel.datasets) + assert 1 == flt1ctrl.datasets.rowCount() + + assert 1 == len(flt2ctrl.datamodel.datasets) + assert 1 == flt2ctrl.datasets.rowCount() + + assert flt1ctrl == dsctrl.get_parent() + + dsctrl.set_parent(flt2ctrl) + assert 2 == flt2ctrl.datasets.rowCount() + assert 0 == flt1ctrl.datasets.rowCount() + assert flt2ctrl == dsctrl.get_parent() + + # DataSetController is recreated when added to new flight. + assert not dsctrl == flt2ctrl.get_child(dsctrl.uid) + assert flt1ctrl.get_child(dsctrl.uid) is None + + +def test_dataset_data_api(project: AirborneProject, hdf5file, gravdata, gpsdata): + prj_ctrl = AirborneProjectController(project) + flt_ctrl = prj_ctrl.get_child(project.flights[0].uid) + + gravfile = DataFile('gravity', datetime.now(), + Path('tests/sample_gravity.csv')) + gpsfile = DataFile('trajectory', datetime.now(), + Path('tests/sample_trajectory.txt'), column_format='hms') + + dataset = DataSet(hdf5file, gravfile, gpsfile) + + HDF5Manager.save_data(gravdata, gravfile, hdf5file) + HDF5Manager.save_data(gpsdata, gpsfile, hdf5file) + + dataset_ctrl = DataSetController(dataset, flt_ctrl) + + assert dataset_ctrl.dataframe() is not None + expected: DataFrame = pd.concat([gravdata, gpsdata]) + expected_cols = [col for col in expected] + + assert expected.equals(dataset_ctrl.dataframe()) + assert set(expected_cols) == set(dataset_ctrl.columns) + + series_model = dataset_ctrl.series_model + assert isinstance(series_model, QStandardItemModel) + assert len(expected_cols) == series_model.rowCount() + + for i in range(series_model.rowCount()): + item: QStandardItem = series_model.item(i, 0) + col = item.data(Qt.DisplayRole) + series = item.data(Qt.UserRole) + + assert expected[col].equals(series) + diff --git a/tests/test_datastore.py b/tests/test_datastore.py deleted file mode 100644 index ef22b0d..0000000 --- a/tests/test_datastore.py +++ /dev/null @@ -1,61 +0,0 @@ -# -*- coding: utf-8 -*- - -import uuid -from datetime import datetime -from pathlib import Path - -import pytest -from pandas import DataFrame - -from dgp.core.models.flight import Flight -from dgp.core.models.data import DataFile -from dgp.core.hdf5_manager import HDF5Manager, HDF5_NAME -# from .context import dgp - -HDF5_FILE = "test.hdf5" - -class TestDataManager: - - # @pytest.fixture(scope='session') - # def temp_dir(self) -> Path: - # return Path(tempfile.gettempdir()).joinpath(str(uuid.uuid4())) - - # @pytest.fixture(scope='session') - # def store(self, temp_dir: Path) -> HDF5Manager: - # hdf = HDF5Manager(temp_dir, mkdir=True) - # return hdf - - @pytest.fixture - def test_df(self): - data = {'Col1': ['c1-1', 'c1-2', 'c1-3'], 'Col2': ['c2-1', 'c2-2', - 'c2-3']} - return DataFrame.from_dict(data) - - def test_datastore_save(self, test_df, tmpdir): - flt = Flight('Test-Flight') - file = DataFile('gravity', datetime.now(), Path('./test.dat'), parent=flt) - path = Path(tmpdir).joinpath(HDF5_FILE) - assert HDF5Manager.save_data(test_df, file, path=path) - loaded = HDF5Manager.load_data(file, path=path) - assert test_df.equals(loaded) - - def test_ds_metadata(self, test_df, tmpdir): - path = Path(tmpdir).joinpath(HDF5_FILE) - flt = Flight('TestMetadataFlight') - file = DataFile('gravity', datetime.now(), source_path=Path('./test.dat'), parent=flt) - HDF5Manager.save_data(test_df, file, path=path) - - attr_key = 'test_attr' - attr_value = {'a': 'complex', 'v': 'value'} - - # Assert True result first - assert HDF5Manager._set_node_attr(file.hdfpath, attr_key, attr_value, path) - # Validate value was stored, and can be retrieved - result = HDF5Manager._get_node_attr(file.hdfpath, attr_key, path) - assert attr_value == result - - # Test retrieval of keys for a specified node - assert attr_key in HDF5Manager.get_node_attrs(file.hdfpath, path) - - with pytest.raises(KeyError): - HDF5Manager._set_node_attr('/invalid/node/path', attr_key, attr_value, path) diff --git a/tests/test_dialogs.py b/tests/test_dialogs.py index e483911..76a9eef 100644 --- a/tests/test_dialogs.py +++ b/tests/test_dialogs.py @@ -12,6 +12,7 @@ from PyQt5.QtWidgets import (QDialogButtonBox, QDialog, QFormLayout, QLineEdit, QLabel, QVBoxLayout, QDateTimeEdit, QHBoxLayout, QPushButton) +from dgp.core.models.dataset import DataSet from dgp.core.controllers.flight_controller import FlightController from dgp.core.models.data import DataFile from dgp.core.models.flight import Flight @@ -128,6 +129,7 @@ def test_import_data_dialog(self, airborne_prj, tmpdir): project, project_ctrl = airborne_prj # type: AirborneProject, AirborneProjectController _f1_date = datetime(2018, 3, 15) flt1 = Flight("Flight1", _f1_date) + flt1.datasets.append(DataSet()) flt2 = Flight("Flight2") fc1 = project_ctrl.add_child(flt1) # type: FlightController fc2 = project_ctrl.add_child(flt2) @@ -139,7 +141,7 @@ def test_import_data_dialog(self, airborne_prj, tmpdir): dlg.set_initial_flight(fc1) assert flt1.name == dlg.qcb_flight.currentText() - fc_clone = dlg._flight_model.item(dlg.qcb_flight.currentIndex()) + fc_clone = dlg.qcb_flight.model().item(dlg.qcb_flight.currentIndex()) assert isinstance(fc_clone, FlightController) assert fc1 != fc_clone assert fc1 == dlg.flight @@ -177,19 +179,21 @@ def test_import_data_dialog(self, airborne_prj, tmpdir): assert not _traj_map['is_utc']() # Test emission of DataFile on _load_file - assert dlg.datatype == DataTypes.GRAVITY - assert 0 == len(flt1.data_files) - dlg._load_file() - assert 1 == len(load_spy) - assert 1 == len(flt1.data_files) - assert _srcpath == flt1.data_files[0].source_path - - load_args = load_spy[0] - assert isinstance(load_args, list) - file = load_args[0] - params = load_args[1] - assert isinstance(file, DataFile) - assert isinstance(params, dict) + # TODO: Fix this, need an actual file to test loading + # assert dlg.datatype == DataTypes.GRAVITY + # dlg.qcb_flight.setCurrentIndex(0) + # dlg.qcb_dataset.setCurrentIndex(0) + # dlg.accept() + # assert 1 == len(load_spy) + # # assert 1 == len(flt1.data_files) + # # assert _srcpath == flt1.data_files[0].source_path + # + # load_args = load_spy[0] + # assert isinstance(load_args, list) + # file = load_args[0] + # params = load_args[1] + # assert isinstance(file, DataFile) + # assert isinstance(params, dict) # Test date setting from flight assert datetime.today() == dlg.qde_date.date() @@ -201,7 +205,7 @@ def test_import_data_dialog(self, airborne_prj, tmpdir): dlg.qchb_copy_file.setChecked(True) QTest.mouseClick(dlg.qdbb_buttons.button(QDialogButtonBox.Ok), Qt.LeftButton) # dlg.accept() - assert 2 == len(load_spy) + assert 1 == len(load_spy) assert project_ctrl.path.joinpath('testfile.dat').exists() def test_add_gravimeter_dialog(self, airborne_prj): diff --git a/tests/test_hdf5store.py b/tests/test_hdf5store.py new file mode 100644 index 0000000..05f153f --- /dev/null +++ b/tests/test_hdf5store.py @@ -0,0 +1,67 @@ +# -*- coding: utf-8 -*- + +from datetime import datetime +from pathlib import Path + +import pytest +from pandas import DataFrame + +from dgp.core.models.flight import Flight +from dgp.core.models.data import DataFile +from dgp.core.hdf5_manager import HDF5Manager + +HDF5_FILE = "test.hdf5" + + +def test_datastore_save_load(gravdata: DataFrame, hdf5file: Path): + flt = Flight('Test-Flight') + datafile = DataFile('gravity', datetime.now(), Path('tests/test.dat'), + parent=flt) + assert HDF5Manager.save_data(gravdata, datafile, path=hdf5file) + loaded = HDF5Manager.load_data(datafile, path=hdf5file) + assert gravdata.equals(loaded) + + # Test loading from file (clear cache) + HDF5Manager.clear_cache() + loaded_nocache = HDF5Manager.load_data(datafile, path=hdf5file) + assert gravdata.equals(loaded_nocache) + + HDF5Manager.clear_cache() + with pytest.raises(FileNotFoundError): + HDF5Manager.load_data(datafile, path=Path('.nonexistent.hdf5')) + + empty_datafile = DataFile('trajectory', datetime.now(), + Path('tests/test.dat'), parent=flt) + with pytest.raises(KeyError): + HDF5Manager.load_data(empty_datafile, path=hdf5file) + + +def test_ds_metadata(gravdata: DataFrame, hdf5file: Path): + flt = Flight('TestMetadataFlight') + datafile = DataFile('gravity', datetime.now(), source_path=Path('./test.dat'), + parent=flt) + empty_datafile = DataFile('trajectory', datetime.now(), + Path('tests/test.dat'), parent=flt) + HDF5Manager.save_data(gravdata, datafile, path=hdf5file) + + attr_key = 'test_attr' + attr_value = {'a': 'complex', 'v': 'value'} + + # Assert True result first + assert HDF5Manager._set_node_attr(datafile.hdfpath, attr_key, attr_value, hdf5file) + # Validate value was stored, and can be retrieved + result = HDF5Manager._get_node_attr(datafile.hdfpath, attr_key, hdf5file) + assert attr_value == result + + # Test retrieval of keys for a specified node + assert attr_key in HDF5Manager.list_node_attrs(datafile.hdfpath, hdf5file) + + with pytest.raises(KeyError): + HDF5Manager._set_node_attr('/invalid/node/path', attr_key, attr_value, + hdf5file) + + with pytest.raises(KeyError): + HDF5Manager.list_node_attrs(empty_datafile.hdfpath, hdf5file) + + assert HDF5Manager._get_node_attr(empty_datafile.hdfpath, 'test_attr', + hdf5file) is None diff --git a/tests/test_loader.py b/tests/test_loader.py index 9dd6781..17a554c 100644 --- a/tests/test_loader.py +++ b/tests/test_loader.py @@ -25,7 +25,7 @@ def mock_failing_loader(*args, **kwargs): def test_load_mock(): loader = FileLoader(Path(TEST_FILE_GRAV), mock_loader, APP) - spy_complete = QSignalSpy(loader.completed) + spy_complete = QSignalSpy(loader.loaded) spy_error = QSignalSpy(loader.error) assert 0 == len(spy_complete) diff --git a/tests/test_models.py b/tests/test_models.py new file mode 100644 index 0000000..c43b9d4 --- /dev/null +++ b/tests/test_models.py @@ -0,0 +1,153 @@ +# -*- coding: utf-8 -*- + +""" +Unit tests for new Project/Flight data classes, including JSON +serialization/de-serialization +""" +import time +from datetime import datetime +from typing import Tuple +from uuid import uuid4 +from pathlib import Path + +import pytest +import pandas as pd + +from dgp.core.models.project import AirborneProject +from dgp.core.hdf5_manager import HDF5Manager +from dgp.core.models.data import DataFile +from dgp.core.models.dataset import DataSet +from dgp.core.models import flight +from dgp.core.models.meter import Gravimeter + + +@pytest.fixture() +def make_flight(): + def _factory() -> Tuple[str, flight.Flight]: + name = str(uuid4().hex)[:12] + return name, flight.Flight(name) + + return _factory + + +def test_flight_actions(make_flight): + # TODO: Test adding/setting gravimeter + flt = flight.Flight('test_flight') + assert 'test_flight' == flt.name + + f1_name, f1 = make_flight() # type: flight.Flight + f2_name, f2 = make_flight() # type: flight.Flight + + assert f1_name == f1.name + assert f2_name == f2.name + + assert not f1.uid == f2.uid + + assert '' % (f1_name, f1.uid) == repr(f1) + + +def test_project_attr(project: AirborneProject): + assert "TestProject" == project.name + project.name = " Project With Whitespace " + assert "Project With Whitespace" == project.name + + assert "Description of TestProject" == project.description + project.description = " Description with gratuitous whitespace " + time.sleep(.1) + assert abs(datetime.utcnow() - project.modify_date).microseconds > 0 + assert "Description with gratuitous whitespace" == project.description + + project.set_attr('tie_value', 1234) + assert 1234 == project.tie_value + assert 1234 == project['tie_value'] + assert 1234 == project.get_attr('tie_value') + + project.set_attr('_my_private_val', 2345) + assert 2345 == project._my_private_val + assert 2345 == project['_my_private_val'] + assert 2345 == project.get_attr('_my_private_val') + + +def test_project_path(project: AirborneProject, tmpdir): + assert isinstance(project.path, Path) + new_path = Path(tmpdir).joinpath("new_prj_path") + project.path = new_path + assert new_path == project.path + + +def test_project_add_child(project: AirborneProject): + with pytest.raises(TypeError): + project.add_child(None) + + +def test_project_get_child(make_flight): + prj = AirborneProject(name="Project-2", path=Path('.')) + f1_name, f1 = make_flight() + f2_name, f2 = make_flight() + f3_name, f3 = make_flight() + prj.add_child(f1) + prj.add_child(f2) + prj.add_child(f3) + + assert f1 == prj.get_child(f1.uid) + assert f3 == prj.get_child(f3.uid) + assert not f2 == prj.get_child(f1.uid) + + with pytest.raises(IndexError): + fx = prj.get_child(str(uuid4().hex)) + + +def test_project_remove_child(make_flight): + prj = AirborneProject(name="Project-3", path=Path('.')) + f1_name, f1 = make_flight() + f2_name, f2 = make_flight() + f3_name, f3 = make_flight() + + prj.add_child(f1) + prj.add_child(f2) + + assert 2 == len(prj.flights) + assert f1 in prj.flights + assert f2 in prj.flights + assert f3 not in prj.flights + + assert not prj.remove_child(f3.uid) + assert prj.remove_child(f1.uid) + + assert f1 not in prj.flights + assert 1 == len(prj.flights) + + +def test_gravimeter(): + meter = Gravimeter("AT1A-13") + assert "AT1A" == meter.type + assert "AT1A-13" == meter.name + assert meter.config is None + config = meter.read_config(Path("tests/at1m.ini")) + assert isinstance(config, dict) + + with pytest.raises(FileNotFoundError): + config = meter.read_config(Path("tests/at1a-fake.ini")) + + assert {} == meter.read_config(Path("tests/sample_gravity.csv")) + + +def test_dataset(tmpdir): + path = Path(tmpdir).joinpath("test.hdf5") + df_grav = DataFile('gravity', datetime.utcnow(), Path('gravity.dat')) + df_traj = DataFile('trajectory', datetime.utcnow(), Path('gps.dat')) + dataset = DataSet(path, df_grav, df_traj) + + assert df_grav == dataset.gravity + assert df_traj == dataset.trajectory + + frame_grav = pd.DataFrame([0, 1, 2]) + frame_traj = pd.DataFrame([7, 8, 9]) + + HDF5Manager.save_data(frame_grav, df_grav, path) + HDF5Manager.save_data(frame_traj, df_traj, path) + + expected_concat: pd.DataFrame = pd.concat([frame_grav, frame_traj]) + assert expected_concat.equals(dataset.dataframe) + + diff --git a/tests/test_project_controllers.py b/tests/test_project_controllers.py deleted file mode 100644 index 19e8bdc..0000000 --- a/tests/test_project_controllers.py +++ /dev/null @@ -1,283 +0,0 @@ -# -*- coding: utf-8 -*- -import random -import uuid -from datetime import datetime -from pathlib import Path - -import pytest -from PyQt5.QtCore import Qt, QAbstractItemModel -from PyQt5.QtGui import QStandardItemModel -from pandas import DataFrame - -from core.hdf5_manager import HDF5Manager -from core.models.dataset import DataSet -from dgp.core.controllers.flightline_controller import FlightLineController -from dgp.core.controllers.project_controllers import AirborneProjectController -from dgp.core.models.project import AirborneProject -from dgp.core.controllers.controller_mixins import AttributeProxy -from dgp.core.controllers.controller_interfaces import IChild, IMeterController, IParent -from dgp.core.controllers.gravimeter_controller import GravimeterController -from dgp.core.controllers.dataset_controller import DataSetController -from dgp.core.models.meter import Gravimeter -from dgp.core.controllers.datafile_controller import DataFileController -from dgp.core.models.data import DataFile -from dgp.core.controllers.flight_controller import FlightController, LoadError -from dgp.core.models.flight import Flight, FlightLine -from .context import APP - - -@pytest.fixture -def project(tmpdir): - prj = AirborneProject(name=str(uuid.uuid4()), path=Path(tmpdir)) - prj_ctrl = AirborneProjectController(prj) - return prj_ctrl - - -@pytest.fixture() -def make_line(): - seq = 0 - - def _factory(): - nonlocal seq - seq += 1 - return FlightLine(datetime.now().timestamp(), - datetime.now().timestamp() + round(random.random() * 1000), - seq) - return _factory - - -def test_flightline_controller(): - pass - - -# TODO: Rewrite this -def test_datafile_controller(): - flight = Flight('test_flightline_controller') - fl_controller = FlightController(flight) - # TODO: Deprecated, DataFiles cannot be children - # datafile = DataFile('gravity', datetime(2018, 6, 15), - # source_path=Path('c:\\data\\gravity.dat')) - # fl_controller.add_child(datafile) - - # assert datafile in flight.data_files - - # assert isinstance(fl_controller._data_files.child(0), DataFileController) - - -def test_gravimeter_controller(tmpdir): - project = AirborneProjectController(AirborneProject(name="TestPrj", path=Path(tmpdir))) - meter = Gravimeter('AT1A-Test') - meter_ctrl = GravimeterController(meter) - - assert isinstance(meter_ctrl, IChild) - assert isinstance(meter_ctrl, IMeterController) - assert isinstance(meter_ctrl, AttributeProxy) - assert not isinstance(meter_ctrl, IParent) - - assert meter == meter_ctrl.data(Qt.UserRole) - - with pytest.raises(AttributeError): - meter_ctrl.set_attr('invalid_attr', 1234) - - assert 'AT1A-Test' == meter_ctrl.get_attr('name') - assert meter_ctrl.get_parent() is None - meter_ctrl.set_parent(project) - assert project == meter_ctrl.get_parent() - - assert hash(meter_ctrl) - - meter_ctrl_clone = meter_ctrl.clone() - assert meter == meter_ctrl_clone.datamodel - - assert "AT1A-Test" == meter_ctrl.data(Qt.DisplayRole) - meter_ctrl.set_attr('name', "AT1A-New") - assert "AT1A-New" == meter_ctrl.data(Qt.DisplayRole) - - -def test_flight_controller(make_line, project: AirborneProjectController): - flight = Flight('Test-Flt-1') - line0 = make_line() - data0 = DataFile('trajectory', datetime(2018, 5, 10), Path('./data0.dat')) - data1 = DataFile('gravity', datetime(2018, 5, 15), Path('./data1.dat')) - flight.add_child(line0) - flight.add_child(data0) - flight.add_child(data1) - - _traj_data = [0, 1, 5, 9] - _grav_data = [2, 8, 1, 0] - # Load test data into temporary project HDFStore - HDF5Manager.save_data(DataFrame(_traj_data), data0, path=project.hdf5path) - HDF5Manager.save_data(DataFrame(_grav_data), data1, path=project.hdf5path) - # project.hdf5store.save_data(DataFrame(_traj_data), data0) - # project.hdf5store.save_data(DataFrame(_grav_data), data1) - - # assert data0 in flight.data_files - # assert data1 in flight.data_files - # assert 1 == len(flight.flight_lines) - # assert 2 == len(flight.data_files) - - fc = project.add_child(flight) - assert hash(fc) - assert str(fc) == str(flight) - assert not fc.is_active() - project.set_active_child(fc) - assert fc.is_active() - - assert flight.uid == fc.uid - assert flight.name == fc.data(Qt.DisplayRole) - - # assert fc._active_gravity is not None - # assert fc._active_trajectory is not None - # assert DataFrame(_traj_data).equals(fc.trajectory) - # assert DataFrame(_grav_data).equals(fc.gravity) - - # line1 = make_line() - # line2 = make_line() - # - # assert fc.add_child(line1) - # assert fc.add_child(line2) - - # The data doesn't exist for this DataFile - data2 = DataFile('gravity', datetime(2018, 5, 25), Path('./data2.dat')) - data2_ctrl = fc.add_child(data2) - assert isinstance(data2_ctrl, DataFileController) - fc.set_active_child(data2_ctrl) - assert fc.get_active_child() != data2_ctrl - - # assert line1 in flight.flight_lines - # assert line2 in flight.flight_lines - - assert data2 in flight.data_files - - model = fc.lines_model - assert isinstance(model, QAbstractItemModel) - assert 3 == model.rowCount() - - # lines = [line0, line1, line2] - # for i in range(model.rowCount()): - # index = model.index(i, 0) - # child = model.data(index, Qt.UserRole) - # assert lines[i] == child - # - # Test use of lines generator - # for i, line in enumerate(fc.lines): - # assert lines[i] == line - - with pytest.raises(TypeError): - fc.add_child({1: "invalid child"}) - - with pytest.raises(TypeError): - fc.set_active_child("not a child") - - fc.set_parent(None) - # with pytest.raises(LoadError): - # fc.load_data(data0) - - # Test child removal - # line1_ctrl = fc.get_child(line1.uid) - # assert isinstance(line1_ctrl, FlightLineController) - # assert line1.uid == line1_ctrl.uid - # data1_ctrl = fc.get_child(data1.uid) - # assert isinstance(data1_ctrl, DataFileController) - # assert data1.uid == data1_ctrl.uid - # - # assert 3 == len(list(fc.lines)) - # assert line1 in flight.flight_lines - # fc.remove_child(line1, line1_ctrl.row(), confirm=False) - # assert 2 == len(list(fc.lines)) - # assert line1 not in flight.flight_lines - # - # assert 3 == fc._data_files.rowCount() - # assert data1 in flight.data_files - # fc.remove_child(data1, data1_ctrl.row(), confirm=False) - # assert 2 == fc._data_files.rowCount() - # assert data1 not in flight.data_files - - with pytest.raises(TypeError): - fc.remove_child("Not a real child", 1, confirm=False) - - -def test_airborne_project_controller(tmpdir): - _name = str(uuid.uuid4().hex) - _path = Path(tmpdir).resolve() - flt0 = Flight("Flt0") - mtr0 = Gravimeter("AT1A-X") - project = AirborneProject(name=_name, path=_path) - project.add_child(flt0) - project.add_child(mtr0) - - assert 1 == len(project.flights) - assert 1 == len(project.gravimeters) - - project_ctrl = AirborneProjectController(project) - assert project == project_ctrl.datamodel - assert project_ctrl.path == project.path - - project_ctrl.set_parent_widget(APP) - assert APP == project_ctrl.get_parent_widget() - - flight = Flight("Flt1") - flight2 = Flight("Flt2") - meter = Gravimeter("AT1A-10") - - fc = project_ctrl.add_child(flight) - assert isinstance(fc, FlightController) - assert flight in project.flights - mc = project_ctrl.add_child(meter) - assert isinstance(mc, GravimeterController) - assert meter in project.gravimeters - - with pytest.raises(ValueError): - project_ctrl.add_child("Invalid Child Object (Str)") - - assert project == project_ctrl.data(Qt.UserRole) - assert _name == project_ctrl.data(Qt.DisplayRole) - assert str(_path) == project_ctrl.data(Qt.ToolTipRole) - assert project.uid == project_ctrl.uid - assert _path == project.path - - assert isinstance(project_ctrl.meter_model, QStandardItemModel) - assert isinstance(project_ctrl.flight_model, QStandardItemModel) - - assert project_ctrl.get_active_child() is None - project_ctrl.set_active_child(fc) - assert fc == project_ctrl.get_active_child() - with pytest.raises(ValueError): - project_ctrl.set_active_child(mc) - - project_ctrl.add_child(flight2) - - fc2 = project_ctrl.get_child(flight2.uid) - assert isinstance(fc2, FlightController) - assert flight2 == fc2.datamodel - - assert 3 == project_ctrl.flights.rowCount() - project_ctrl.remove_child(flight2, fc2.row(), confirm=False) - assert 2 == project_ctrl.flights.rowCount() - assert project_ctrl.get_child(fc2.uid) is None - - assert 2 == project_ctrl.meters.rowCount() - project_ctrl.remove_child(meter, mc.row(), confirm=False) - assert 1 == project_ctrl.meters.rowCount() - - with pytest.raises(ValueError): - project_ctrl.remove_child("Not a child", 2) - - jsons = project_ctrl.save(to_file=False) - assert isinstance(jsons, str) - - -def test_dataset_controller(tmpdir): - """Test DataSet controls - Load data from HDF5 Store - Behavior when incomplete (no grav or traj) - """ - hdf = Path(tmpdir).joinpath('test.hdf5') - ds = DataSet(hdf) - dsc = DataSetController(ds) - - - - - - diff --git a/tests/test_project_models.py b/tests/test_project_models.py deleted file mode 100644 index df2ad2a..0000000 --- a/tests/test_project_models.py +++ /dev/null @@ -1,345 +0,0 @@ -# -*- coding: utf-8 -*- - -""" -Unit tests for new Project/Flight data classes, including JSON -serialization/de-serialization -""" -import json -import time -import random -from datetime import datetime, date -from typing import Tuple -from uuid import uuid4 -from pathlib import Path -from pprint import pprint - -import pytest -import pandas as pd - -from dgp.core.hdf5_manager import HDF5Manager -from dgp.core.models.data import DataFile -from dgp.core.models.dataset import DataSet -from dgp.core.models import project, flight -from dgp.core.models.meter import Gravimeter - - -@pytest.fixture() -def make_flight(): - def _factory() -> Tuple[str, flight.Flight]: - name = str(uuid4().hex)[:12] - return name, flight.Flight(name) - - return _factory - - -@pytest.fixture() -def make_line(): - seq = 0 - - def _factory(): - nonlocal seq - seq += 1 - return flight.FlightLine(datetime.now().timestamp(), - datetime.now().timestamp() + round(random.random() * 1000), - seq) - - return _factory - - -def test_flight_line(): - _start0 = datetime.now().timestamp() - _stop0 = _start0 + 1688 - _label0 = "Line0" - - line = flight.FlightLine(_start0, _stop0, 0, _label0) - - _start0dt = datetime.fromtimestamp(_start0) - _stop0dt = datetime.fromtimestamp(_stop0) - - assert _start0dt == line.start - assert _stop0dt == line.stop - assert _label0 == line.label - - _start1 = datetime.now().timestamp() + 100 - line.start = _start1 - assert datetime.fromtimestamp(_start1) == line.start - - _stop1 = _start1 + 2048 - line.stop = _stop1 - assert datetime.fromtimestamp(_stop1) == line.stop - - -def test_flight_actions(make_flight, make_line): - flt = flight.Flight('test_flight') - assert 'test_flight' == flt.name - - f1_name, f1 = make_flight() # type: flight.Flight - f2_name, f2 = make_flight() # type: flight.Flight - - assert f1_name == f1.name - assert f2_name == f2.name - - assert not f1.uid == f2.uid - - line1 = make_line() # type: flight.FlightLine - line2 = make_line() # type: flight.FlightLine - - assert not line1.sequence == line2.sequence - - assert 0 == len(f1.flight_lines) - assert 0 == len(f2.flight_lines) - - f1.add_child(line1) - assert 1 == len(f1.flight_lines) - - with pytest.raises(TypeError): - f1.add_child('not a flight line') - - assert f1.add_child(None) is None - - assert line1 in f1.flight_lines - - f1.remove_child(line1.uid) - assert line1 not in f1.flight_lines - - assert not f1.remove_child("Not a child") - assert not f1.remove_child(None) - - f1.add_child(line1) - f1.add_child(line2) - - assert line1 in f1.flight_lines - assert line2 in f1.flight_lines - assert 2 == len(f1.flight_lines) - - assert '' % (f1_name, f1.uid) == repr(f1) - - -def test_project_attr(): - prj_path = Path('./project-1') - prj = project.AirborneProject(name="Project-1", path=prj_path, - description="Test Project 1") - assert "Project-1" == prj.name - prj.name = " Project With Whitespace " - assert "Project With Whitespace" == prj.name - - assert prj_path == prj.path - assert "Test Project 1" == prj.description - prj.description = " Description with gratuitous whitespace " - assert abs(prj.modify_date - datetime.utcnow()).microseconds < 1500 - assert "Description with gratuitous whitespace" == prj.description - - prj.set_attr('tie_value', 1234) - assert 1234 == prj.tie_value - assert 1234 == prj['tie_value'] - assert 1234 == prj.get_attr('tie_value') - - prj.set_attr('_my_private_val', 2345) - assert 2345 == prj._my_private_val - assert 2345 == prj['_my_private_val'] - assert 2345 == prj.get_attr('_my_private_val') - - -def test_project_add_child(make_flight, tmpdir): - prj = project.AirborneProject(name="Project-1.5", path=Path(tmpdir)) - with pytest.raises(TypeError): - prj.add_child(None) - - -def test_project_get_child(make_flight): - prj = project.AirborneProject(name="Project-2", path=Path('.')) - f1_name, f1 = make_flight() - f2_name, f2 = make_flight() - f3_name, f3 = make_flight() - prj.add_child(f1) - prj.add_child(f2) - prj.add_child(f3) - - assert f1 == prj.get_child(f1.uid) - assert f3 == prj.get_child(f3.uid) - assert not f2 == prj.get_child(f1.uid) - - with pytest.raises(IndexError): - fx = prj.get_child(str(uuid4().hex)) - - -def test_project_remove_child(make_flight): - prj = project.AirborneProject(name="Project-3", path=Path('.')) - f1_name, f1 = make_flight() - f2_name, f2 = make_flight() - f3_name, f3 = make_flight() - - prj.add_child(f1) - prj.add_child(f2) - - assert 2 == len(prj.flights) - assert f1 in prj.flights - assert f2 in prj.flights - assert f3 not in prj.flights - - assert not prj.remove_child(f3.uid) - assert prj.remove_child(f1.uid) - - assert f1 not in prj.flights - assert 1 == len(prj.flights) - - -def test_project_serialize(make_flight, make_line, tmpdir): - prj_path = Path(tmpdir).joinpath("project") - prj_path.mkdir() - prj = project.AirborneProject(name="Project-3", path=prj_path, - description="Test Project Serialization") - f1_name, f1 = make_flight() # type: flight.Flight - line1 = make_line() # type: # flight.FlightLine - data1 = flight.DataFile('gravity', datetime.today(), Path('./fake_file.dat')) - f1.add_child(line1) - f1.add_child(data1) - prj.add_child(f1) - - prj.set_attr('start_tie_value', 1234.90) - prj.set_attr('end_tie_value', 987.123) - - encoded = prj.to_json(indent=4) - - decoded_dict = json.loads(encoded) - # pprint(decoded_dict) - - assert 'Project-3' == decoded_dict['name'] - assert {'_type': 'Path', 'path': str(prj_path.resolve())} == decoded_dict['path'] - assert 'start_tie_value' in decoded_dict['attributes'] - assert 1234.90 == decoded_dict['attributes']['start_tie_value'] - assert 'end_tie_value' in decoded_dict['attributes'] - assert 987.123 == decoded_dict['attributes']['end_tie_value'] - for flight_dict in decoded_dict['flights']: - assert '_type' in flight_dict and flight_dict['_type'] == 'Flight' - - _date = date.today() - enc_date = json.dumps(_date, cls=project.ProjectEncoder) - assert _date == json.loads(enc_date, cls=project.ProjectDecoder, klass=None) - with pytest.raises(TypeError): - json.dumps(pd.DataFrame([0, 1]), cls=project.ProjectEncoder) - - # Test serialize to file - prj.to_json(to_file=True) - assert prj_path.joinpath(project.PROJECT_FILE_NAME).exists() - - -def test_project_deserialize(make_flight, make_line): - attrs = { - 'attr1': 12345, - 'attr2': 192.201, - 'attr3': False, - 'attr4': "Notes on project" - } - prj = project.AirborneProject(name="SerializeTest", path=Path('./prj1'), - description="Test DeSerialize") - - for key, value in attrs.items(): - prj.set_attr(key, value) - - assert attrs == prj._attributes - - f1_name, f1 = make_flight() # type: flight.Flight - f2_name, f2 = make_flight() - line1 = make_line() # type: flight.FlightLine - line2 = make_line() - data1 = DataFile('gravity', datetime.today(), Path('./data1.dat')) - f1.add_child(line1) - f1.add_child(line2) - f1.add_child(data1) - - prj.add_child(f1) - prj.add_child(f2) - - mtr = Gravimeter('AT1M-X') - prj.add_child(mtr) - - serialized = prj.to_json(indent=4) - time.sleep(0.20) # Fuzz for modification date - prj_deserialized = project.AirborneProject.from_json(serialized) - re_serialized = prj_deserialized.to_json(indent=4) - assert serialized == re_serialized - - assert attrs == prj_deserialized._attributes - assert prj.create_date == prj_deserialized.create_date - - flt_names = [flt.name for flt in prj_deserialized.flights] - assert f1_name in flt_names - assert f2_name in flt_names - - f1_reconstructed = prj_deserialized.get_child(f1.uid) - assert f1.uid in [flt.uid for flt in prj_deserialized.flights] - assert 2 == len(prj_deserialized.flights) - prj_deserialized.remove_child(f1_reconstructed.uid) - assert 1 == len(prj_deserialized.flights) - assert f1.uid not in [flt.uid for flt in prj_deserialized.flights] - assert f1_reconstructed.name == f1.name - assert f1_reconstructed.uid == f1.uid - - assert f2.uid in [flt.uid for flt in prj_deserialized.flights] - - assert line1.uid in [line.uid for line in f1_reconstructed.flight_lines] - assert line2.uid in [line.uid for line in f1_reconstructed.flight_lines] - - -def test_parent_child_serialization(): - """Test that an object _parent reference is correctly serialized and deserialized - i.e. when a child say FlightLine or DataFile is added to a flight, it should - have a reference to its parent Flight. - When de-serializing, check to see that this reference has been correctly assembled - """ - prj = project.AirborneProject(name="Parent-Child-Test", path=Path('.')) - flt = flight.Flight('Flight-1') - data1 = DataFile('gravity', datetime.now(), Path('./data1.dat')) - - flt.add_child(data1) - assert flt == data1.parent - - prj.add_child(flt) - assert flt in prj.flights - - encoded = prj.to_json(indent=2) - # pprint(encoded) - - decoded = project.AirborneProject.from_json(encoded) - - assert 1 == len(decoded.flights) - flt_ = decoded.flights[0] - assert 1 == len(flt_.data_files) - data_ = flt_.data_files[0] - assert flt_ == data_.parent - - -def test_gravimeter(): - meter = Gravimeter("AT1A-13") - assert "AT1A" == meter.type - assert "AT1A-13" == meter.name - assert meter.config is None - config = meter.read_config(Path("tests/at1m.ini")) - assert isinstance(config, dict) - - with pytest.raises(FileNotFoundError): - config = meter.read_config(Path("tests/at1a-fake.ini")) - - assert {} == meter.read_config(Path("tests/sample_gravity.csv")) - - -def test_dataset(tmpdir): - path = Path(tmpdir).joinpath("test.hdf5") - df_grav = DataFile('gravity', datetime.utcnow(), Path('gravity.dat')) - df_traj = DataFile('trajectory', datetime.utcnow(), Path('gps.dat')) - dataset = DataSet(path, df_grav, df_traj) - - assert df_grav == dataset.gravity - assert df_traj == dataset.trajectory - - frame_grav = pd.DataFrame([0, 1, 2]) - frame_traj = pd.DataFrame([7, 8, 9]) - - HDF5Manager.save_data(frame_grav, df_grav, path) - HDF5Manager.save_data(frame_traj, df_traj, path) - - expected_concat: pd.DataFrame = pd.concat([frame_grav, frame_traj]) - assert expected_concat.equals(dataset.dataframe) - - diff --git a/tests/test_serialization.py b/tests/test_serialization.py new file mode 100644 index 0000000..75e0fce --- /dev/null +++ b/tests/test_serialization.py @@ -0,0 +1,111 @@ +# -*- coding: utf-8 -*- +import json +import time +from datetime import datetime, date +from pathlib import Path +from pprint import pprint + +import pandas as pd +import pytest + +from dgp.core.models.data import DataFile +from dgp.core.models.flight import Flight +from dgp.core.models.project import AirborneProject, ProjectEncoder, ProjectDecoder, PROJECT_FILE_NAME + + +"""Test Project is created as a global fixture in conftest.py""" + + +def test_project_serialize(project: AirborneProject, tmpdir): + _description = "Description for project that will be serialized." + project.description = _description + project.set_attr('start_tie_value', 1234.90) + project.set_attr('end_tie_value', 987) + + encoded = project.to_json(indent=4) + decoded_dict = json.loads(encoded) + # pprint(decoded_dict) + + assert project.name == decoded_dict['name'] + assert {'_type': 'Path', 'path': str(project.path.resolve())} == decoded_dict['path'] + assert 'start_tie_value' in decoded_dict['attributes'] + assert 1234.90 == decoded_dict['attributes']['start_tie_value'] + assert 'end_tie_value' in decoded_dict['attributes'] + assert 987 == decoded_dict['attributes']['end_tie_value'] + for flight_obj in decoded_dict['flights']: + assert '_type' in flight_obj and flight_obj['_type'] == 'Flight' + + _date = date.today() + enc_date = json.dumps(_date, cls=ProjectEncoder) + assert _date == json.loads(enc_date, cls=ProjectDecoder, klass=None) + with pytest.raises(TypeError): + json.dumps(pd.DataFrame([0, 1]), cls=ProjectEncoder) + + # Test serialize to file + project.to_json(to_file=True) + assert project.path.joinpath(PROJECT_FILE_NAME).exists() + + +def test_project_deserialize(project: AirborneProject): + attrs = { + 'attr1': 12345, + 'attr2': 192.201, + 'attr3': False, + 'attr4': "Notes on project" + } + for key, value in attrs.items(): + project.set_attr(key, value) + + assert attrs == project._attributes + + flt1 = project.flights[0] + flt2 = project.flights[1] + + serialized = project.to_json(indent=4) + time.sleep(0.20) # Fuzz for modification date + prj_deserialized = AirborneProject.from_json(serialized) + re_serialized = prj_deserialized.to_json(indent=4) + assert serialized == re_serialized + + assert attrs == prj_deserialized._attributes + assert project.create_date == prj_deserialized.create_date + + flt_names = [flt.name for flt in prj_deserialized.flights] + assert flt1.name in flt_names + assert flt2.name in flt_names + + f1_reconstructed = prj_deserialized.get_child(flt1.uid) + assert flt1.uid in [flt.uid for flt in prj_deserialized.flights] + assert 2 == len(prj_deserialized.flights) + prj_deserialized.remove_child(f1_reconstructed.uid) + assert 1 == len(prj_deserialized.flights) + assert flt1.uid not in [flt.uid for flt in prj_deserialized.flights] + assert f1_reconstructed.name == flt1.name + assert f1_reconstructed.uid == flt1.uid + + assert flt2.uid in [flt.uid for flt in prj_deserialized.flights] + + +def test_parent_child_serialization(): + """Test that an object _parent reference is correctly serialized and deserialized + i.e. when a child say FlightLine or DataFile is added to a flight, it should + have a reference to its parent Flight. + When de-serializing, check to see that this reference has been correctly assembled + """ + prj = AirborneProject(name="Parent-Child-Test", path=Path('.')) + flt = Flight('Flight-1') + data1 = DataFile('gravity', datetime.now(), Path('./data1.dat')) + + # flt.add_child(data1) + # assert flt == data1.parent + + prj.add_child(flt) + assert flt in prj.flights + + encoded = prj.to_json(indent=2) + # pprint(encoded) + + decoded = AirborneProject.from_json(encoded) + + assert 1 == len(decoded.flights) + flt_ = decoded.flights[0] From c612bfae0a811b922dc05d63a9ce67f1301ae318 Mon Sep 17 00:00:00 2001 From: Zachery Brady Date: Fri, 13 Jul 2018 16:12:47 -0600 Subject: [PATCH 137/236] Transform functionality added/improved. Prototype features added to plot data from a Transform Graph result. Ability to swtich/select the index to plot against (Time/Latitude/Longitude). Experimental 'Stacked Lines' plot mode, slices data from the DataSet based on DataSegments and plots vs the selected Index - allows for line by line comparison of Free Air Correction etc. --- dgp/core/controllers/controller_bases.py | 2 +- dgp/gui/dialogs/add_flight_dialog.py | 2 +- dgp/gui/plotting/plotters.py | 2 +- dgp/gui/ui/data_import_dialog.ui | 7 +- dgp/gui/ui/transform_tab_widget.ui | 136 +++++++++----- dgp/gui/workspaces/PlotTab.py | 17 +- dgp/gui/workspaces/TransformTab.py | 220 +++++++++++++++++------ tests/conftest.py | 4 +- tests/test_workspaces.py | 23 +++ 9 files changed, 301 insertions(+), 112 deletions(-) create mode 100644 tests/test_workspaces.py diff --git a/dgp/core/controllers/controller_bases.py b/dgp/core/controllers/controller_bases.py index 09d09bf..0b22a21 100644 --- a/dgp/core/controllers/controller_bases.py +++ b/dgp/core/controllers/controller_bases.py @@ -1,5 +1,5 @@ # -*- coding: utf-8 -*- -from core.oid import OID +from dgp.core.oid import OID from dgp.core.controllers.controller_interfaces import IBaseController diff --git a/dgp/gui/dialogs/add_flight_dialog.py b/dgp/gui/dialogs/add_flight_dialog.py index 89c66a8..9ef2856 100644 --- a/dgp/gui/dialogs/add_flight_dialog.py +++ b/dgp/gui/dialogs/add_flight_dialog.py @@ -25,7 +25,7 @@ def __init__(self, project: IAirborneController, flight: IFlightController = Non self.qpb_add_sensor.clicked.connect(self._project.add_gravimeter) # Configure Form Validation - self._name_validator = QRegExpValidator(QRegExp(".{4,20}")) + self._name_validator = QRegExpValidator(QRegExp("[A-Za-z]+.{2,20}")) self.qle_flight_name.setValidator(self._name_validator) if self._flight is not None: diff --git a/dgp/gui/plotting/plotters.py b/dgp/gui/plotting/plotters.py index d40e0d3..8677a2e 100644 --- a/dgp/gui/plotting/plotters.py +++ b/dgp/gui/plotting/plotters.py @@ -13,7 +13,7 @@ from pyqtgraph import PlotItem from dgp.core.oid import OID -from core.types.tuples import LineUpdate +from dgp.core.types.tuples import LineUpdate from .helpers import LinearFlightRegion from .backends import PyQtGridPlotWidget diff --git a/dgp/gui/ui/data_import_dialog.ui b/dgp/gui/ui/data_import_dialog.ui index 02ff97f..b6c1f5b 100644 --- a/dgp/gui/ui/data_import_dialog.ui +++ b/dgp/gui/ui/data_import_dialog.ui @@ -7,7 +7,7 @@ 0 0 732 - 685 + 683 @@ -223,6 +223,9 @@ + + false + 0 @@ -230,7 +233,7 @@ - Add Dataset... + New Dataset diff --git a/dgp/gui/ui/transform_tab_widget.ui b/dgp/gui/ui/transform_tab_widget.ui index fd07707..47bb9a7 100644 --- a/dgp/gui/ui/transform_tab_widget.ui +++ b/dgp/gui/ui/transform_tab_widget.ui @@ -6,7 +6,7 @@ 0 0 - 475 + 622 500 @@ -48,57 +48,26 @@ - + - Flight Line: + Transform Graph: - - - - - - 0 - 0 - - - - - - - - - - Index: - - - - - - - - - - Transform: - - - - - + - + Transform - + false @@ -108,14 +77,14 @@ - + - Channels + Channels (Y-Axis): - + QAbstractItemView::NoEditTriggers @@ -124,14 +93,14 @@ - + Select All - + Deselect All @@ -139,6 +108,89 @@ + + + + + + X-Axis: + + + + + + + + + + Segment: + + + + + + + 3 + + + + + false + + + + 0 + 0 + + + + + + + + false + + + + 0 + 0 + + + + Set + + + + + + + false + + + + 0 + 0 + + + + Clear + + + + + + + + + Stack Lines + + + true + + + + + diff --git a/dgp/gui/workspaces/PlotTab.py b/dgp/gui/workspaces/PlotTab.py index 99d4b34..b966662 100644 --- a/dgp/gui/workspaces/PlotTab.py +++ b/dgp/gui/workspaces/PlotTab.py @@ -8,8 +8,7 @@ from PyQt5.QtWidgets import QVBoxLayout, QHBoxLayout, QDockWidget, QSizePolicy import PyQt5.QtWidgets as QtWidgets -from dgp.core.controllers.dataset_controller import DataSetController -from gui.widgets.channel_select_widget import ChannelSelectWidget +from dgp.gui.widgets.channel_select_widget import ChannelSelectWidget from dgp.core.controllers.flight_controller import FlightController from dgp.gui.plotting.plotters import LineUpdate, PqtLineSelectPlot from . import BaseTab @@ -19,20 +18,17 @@ class PlotTab(BaseTab): """Sub-tab displayed within Flight tab interface. Displays canvas for plotting data series.""" _name = "Line Selection" - defaults = {'gravity': 0, 'long': 1, 'cross': 1} - def __init__(self, label: str, flight: FlightController, - dataset: DataSetController, **kwargs): + def __init__(self, label: str, flight: FlightController, **kwargs): # TODO: It will make more sense to associate a DataSet with the plot vs a Flight super().__init__(label, flight, **kwargs) self.log = logging.getLogger(__name__) - self._dataset = dataset + self._dataset = flight.get_active_dataset() self.plot: PqtLineSelectPlot = PqtLineSelectPlot(rows=2) self.plot.line_changed.connect(self._on_modified_line) self._setup_ui() - # TODO: Lines should probably be associated with data files - # There should also be a check to ensure that the lines are within the bounds of the data + # TODO:There should also be a check to ensure that the lines are within the bounds of the data # Huge slowdowns occur when trying to plot a FlightLine and a channel when the points are weeks apart # for line in flight.lines: # self.plot.add_linked_selection(line.start.timestamp(), line.stop.timestamp(), uid=line.uid, emit=False) @@ -60,7 +56,8 @@ def _setup_ui(self): alignment=Qt.AlignRight) qvbl_plot_layout.addLayout(qhbl_top_buttons) - channel_widget = ChannelSelectWidget(self._dataset.channel_model) + channel_widget = ChannelSelectWidget(self._dataset.series_model) + self.log.debug(f'Dataset is {self._dataset!s} with {self._dataset.series_model.rowCount()} rows') channel_widget.channel_added.connect(self._channel_added) channel_widget.channel_removed.connect(self._channel_removed) channel_widget.channels_cleared.connect(self._clear_plot) @@ -94,8 +91,6 @@ def _toggle_selection(self, state: bool): self._mode_label.setText("") def _on_modified_line(self, update: LineUpdate): - # TODO: Update this to work with new project - print(update) start = update.start stop = update.stop try: diff --git a/dgp/gui/workspaces/TransformTab.py b/dgp/gui/workspaces/TransformTab.py index 4f6effe..5a600cf 100644 --- a/dgp/gui/workspaces/TransformTab.py +++ b/dgp/gui/workspaces/TransformTab.py @@ -1,12 +1,15 @@ # -*- coding: utf-8 -*- import logging +from typing import Union, List -from PyQt5.QtCore import Qt +import pandas as pd +from PyQt5.QtCore import Qt, pyqtSignal, pyqtSlot from PyQt5.QtGui import QStandardItemModel, QStandardItem from PyQt5.QtWidgets import QVBoxLayout, QWidget, QComboBox -from core.controllers.flight_controller import FlightController +from dgp.core.controllers.dataset_controller import DataSegmentController +from dgp.core.controllers.flight_controller import FlightController from dgp.lib.transform.transform_graphs import SyncGravity, AirbornePost, TransformGraph from dgp.gui.plotting.plotters import TransformPlot from . import BaseTab @@ -14,107 +17,220 @@ class TransformWidget(QWidget, Ui_TransformInterface): + result = pyqtSignal() + + # User Roles for specific data within a channel + TIME = 0x0101 + LATITUDE = 0x0102 + LONGITUDE = 0x103 + def __init__(self, flight: FlightController): super().__init__() self.setupUi(self) self.log = logging.getLogger(__name__) self._flight = flight + self._dataset = flight.get_active_dataset() self._plot = TransformPlot(rows=1) - self._current_dataset = None + + self._result: pd.DataFrame = None + self.result.connect(self._on_result) + + # Line mask to view individual lines + self._mask = None # Initialize Models for ComboBoxes self.plot_index = QStandardItemModel() self.transform_graphs = QStandardItemModel() # Set ComboBox Models - self.cb_flight_lines.setModel(self._flight.lines_model) - self.cb_plot_index.setModel(self.plot_index) - self.cb_plot_index.currentIndexChanged[int].connect(lambda idx: print("Index changed to %d" % idx)) - - self.cb_transform_graphs.setModel(self.transform_graphs) - - # Initialize model for channels - # TODO: This model should be of the transformed dataset not the flight data_model - self.channels = QStandardItemModel() - self.channels.itemChanged.connect(self._update_channel_selection) - self.lv_channels.setModel(self.channels) - - # Populate ComboBox Models - # self._set_flight_lines() - - for choice in ['Time', 'Latitude', 'Longitude']: - item = QStandardItem(choice) - item.setData(0, Qt.UserRole) + self.qcb_mask.setModel(self._dataset.segment_model) + self.qcb_plot_index.setModel(self.plot_index) + self.qcb_transform_graphs.setModel(self.transform_graphs) + + self.qcb_plot_index.currentIndexChanged[int].connect(self._index_changed) + + # Initialize model for transformed channels + self._channel_model = QStandardItemModel() + self._channel_model.itemChanged.connect(self._update_channel_selection) + self.qlv_channels.setModel(self._channel_model) + + self._index_map = { + 'Time': self.TIME, + 'Latitude': self.LATITUDE, + 'Longitude': self.LONGITUDE + } + for key, value in self._index_map.items(): + item = QStandardItem(key) + item.setData(value, Qt.UserRole) self.plot_index.appendRow(item) - self.cb_plot_index.setCurrentIndex(0) + self.qcb_plot_index.setCurrentIndex(0) for choice, method in [('Airborne Post', AirbornePost)]: item = QStandardItem(choice) item.setData(method, Qt.UserRole) self.transform_graphs.appendRow(item) - self.bt_execute_transform.clicked.connect(self.execute_transform) - self.bt_select_all.clicked.connect(lambda: self._set_all_channels(Qt.Checked)) - self.bt_select_none.clicked.connect(lambda: self._set_all_channels(Qt.Unchecked)) + self.qpb_execute_transform.clicked.connect(self.execute_transform) + self.qpb_select_all.clicked.connect(lambda: self._set_all_channels(Qt.Checked)) + self.qpb_select_none.clicked.connect(lambda: self._set_all_channels(Qt.Unchecked)) + self.qtb_set_mask.clicked.connect(self._set_mask) + self.qtb_clear_mask.clicked.connect(self._clear_mask) + self.qpb_stack_lines.clicked.connect(self._stack_lines) self.hlayout.addWidget(self._plot.widget, Qt.AlignLeft | Qt.AlignTop) @property def raw_gravity(self): - return self._flight.gravity + return self._dataset.gravity @property def raw_trajectory(self): - return self._flight.trajectory + return self._dataset.trajectory @property - def transform(self) -> QComboBox: - return self.cb_transform_select + def dataframe(self) -> Union[pd.DataFrame, None]: + return self._dataset.dataframe() @property def plot(self) -> TransformPlot: return self._plot + @property + def _channels(self) -> List[QStandardItem]: + return [self._channel_model.item(i) + for i in range(self._channel_model.rowCount())] + + @property + def _segments(self) -> List[DataSegmentController]: + return [self._dataset.segment_model.item(i) + for i in range(self._dataset.segment_model.rowCount())] + + def _auto_range(self): + """Call autoRange on all plot surfaces to scale the view to its + contents""" + for plot in self.plot.plots: + plot.autoRange() + + def _view_transform_graph(self): + """Print out the dictionary transform (or even the raw code) in GUI?""" + pass + + def _set_mask(self): + # TODO: Decide whether this is useful to allow viewing of a single line + # segment + pass + + def _clear_mask(self): + pass + + def _split_by_segment(self, segments: List[DataSegmentController], series): + + pass + + def _stack_lines(self): + """Experimental feature, currently works to plot only FAC vs Lon + + TODO: Maybe make stacked lines a toggleable mode + TODO: Need to be more general and work on all transforms/channels + """ + if self._result is None: + self.log.warning(f'Transform result not yet computed') + return + + channels = [] + for channel in self._channels: + if channel.checkState() == Qt.Checked: + channels.append(channel) + # channel.setCheckState(Qt.Unchecked) + if not len(channels): + self.log.error("No channel selected.") + return + + # series = channels.pop() + # TODO: Make this a class property + xindex = self.qcb_plot_index.currentData(Qt.UserRole) + + for segment in self._segments: + start = segment.get_attr('start') + stop = segment.get_attr('stop') + start_idx = self._result.index.searchsorted(start) + stop_idx = self._result.index.searchsorted(stop) + self.log.debug(f'Start idx {start_idx} stop idx {stop_idx}') + + for channel in channels: + # Stack only a single channel for the moment + segment_series = channel.data(xindex).iloc[start_idx:stop_idx] + segment_series.name = f'{channel.text()} - {segment.get_attr("sequence")}' + self.plot.add_series(segment_series) + + self._auto_range() + def _set_all_channels(self, state=Qt.Checked): - for i in range(self.channels.rowCount()): - self.channels.item(i).setCheckState(state) + for i in range(self._channel_model.rowCount()): + self._channel_model.item(i).setCheckState(state) def _update_channel_selection(self, item: QStandardItem): - data = item.data(Qt.UserRole) + xindex = self.qcb_plot_index.currentData(Qt.UserRole) + data = item.data(xindex) if item.checkState() == Qt.Checked: self.plot.add_series(data) else: self.plot.remove_series(data) + self._auto_range() - def _view_transform_graph(self): - """Print out the dictionary transform (or even the raw code) in GUI?""" - pass - - def execute_transform(self): - if self.raw_trajectory is None or self.raw_gravity is None: - self.log.warning("Missing trajectory or gravity") + @pyqtSlot(int, name='_index_changed') + def _index_changed(self, index: int): + self.log.debug(f'X-Axis changed to {self.qcb_plot_index.currentText()}') + if self._result is None: return - self.log.info("Preparing Transformation Graph") - transform = self.cb_transform_graphs.currentData(Qt.UserRole) + self.plot.clear() + for channel in self._channels: + if channel.checkState() == Qt.Checked: + channel.setCheckState(Qt.Unchecked) + channel.setCheckState(Qt.Checked) - graph = transform(self.raw_trajectory, self.raw_gravity, 0, 0) - self.log.info("Executing graph") - results = graph.execute() - result_df = graph.result_df() + self._auto_range() + + @pyqtSlot(name='_on_result') + def _on_result(self): + default_channels = ['fac'] - default_channels = ['gravity'] - self.channels.clear() - for col in result_df.columns: + time_df = self._result + lat_df = time_df.set_index('lat') + lon_df = time_df.set_index('lon') + + self._channel_model.clear() + for col in sorted(time_df.columns): item = QStandardItem(col) item.setCheckable(True) - item.setData(result_df[col], Qt.UserRole) - self.channels.appendRow(item) + item.setData(time_df[col], self.TIME) + if col == 'lat': + item.setData(pd.Series(), self.LATITUDE) + else: + item.setData(lat_df[col], self.LATITUDE) + + if col == 'lon': + item.setData(pd.Series(), self.LONGITUDE) + else: + item.setData(lon_df[col], self.LONGITUDE) + self._channel_model.appendRow(item) if col in default_channels: item.setCheckState(Qt.Checked) - # lat_idx = result_df.set_index('lat') - # lon_idx = result_df.set_index('lon') + def execute_transform(self): + gravity = self.raw_gravity + trajectory = self.raw_trajectory + if gravity is None or trajectory is None: + self.log.warning("Missing trajectory or gravity") + return + + transform = self.qcb_transform_graphs.currentData(Qt.UserRole) + graph = transform(trajectory, gravity, 0, 0) + self.log.info("Executing graph") + graph.execute() + self._result = graph.result_df() + self.result.emit() class TransformTab(BaseTab): diff --git a/tests/conftest.py b/tests/conftest.py index c9543a7..209d367 100644 --- a/tests/conftest.py +++ b/tests/conftest.py @@ -12,8 +12,8 @@ from dgp.core.models.meter import Gravimeter from dgp.core.models.project import AirborneProject from dgp.core.oid import OID -from lib.gravity_ingestor import read_at1a -from lib.trajectory_ingestor import import_trajectory +from dgp.lib.gravity_ingestor import read_at1a +from dgp.lib.trajectory_ingestor import import_trajectory def get_ts(offset=0): diff --git a/tests/test_workspaces.py b/tests/test_workspaces.py new file mode 100644 index 0000000..2fd60fa --- /dev/null +++ b/tests/test_workspaces.py @@ -0,0 +1,23 @@ +# -*- coding: utf-8 -*- + +# Tests for gui workspace widgets in gui/workspaces + +import pytest + +from dgp.core.controllers.dataset_controller import DataSetController +from dgp.core.models.project import AirborneProject +from dgp.core.controllers.project_controllers import AirborneProjectController +from dgp.gui.workspaces import PlotTab +from .context import APP + + +def test_plot_tab_init(project: AirborneProject): + prj_ctrl = AirborneProjectController(project) + flt1_ctrl = prj_ctrl.get_child(project.flights[0].uid) + ds_ctrl = flt1_ctrl.get_child(flt1_ctrl.datamodel.datasets[0].uid) + assert isinstance(ds_ctrl, DataSetController) + assert ds_ctrl == flt1_ctrl.get_active_dataset() + assert ds_ctrl.dataframe() is None + + tab = PlotTab("TestTab", flt1_ctrl) + From 831974b54173956eb830bfd4fe818327ad074184 Mon Sep 17 00:00:00 2001 From: bradyzp Date: Sat, 14 Jul 2018 17:38:17 -0600 Subject: [PATCH 138/236] DOC: Update/Add Documentation. Update sphinx conf Update documentation to reflect changes in dgp.core.models and dgp.core.controllers. Added skeleton for User Guide documentation. Include reference to requirements-specification from project root. Add/configure intersphinx extension to allow direct linking to external documentation sources (Python Docs, Numpy etc.) Update contributing.rst to reflect changes in CI and test frameworks, also fixed outdated link to NumPy docstring standard. --- docs/source/conf.py | 29 ++++++++- docs/source/contributing.rst | 42 ++++++++++-- docs/source/core/controllers.rst | 54 ++++++++++++++-- docs/source/core/data-management.rst | 28 ++++++++ docs/source/core/models.rst | 64 ++++++++++++++++--- docs/source/index.rst | 35 +++++++++- .../requirements-specification-include.rst | 1 + docs/source/todo.rst | 4 ++ docs/source/userguide.rst | 58 ++++++++++++++++- requirements-specification.rst | 26 ++++++-- 10 files changed, 309 insertions(+), 32 deletions(-) create mode 100644 docs/source/core/data-management.rst create mode 100644 docs/source/requirements-specification-include.rst create mode 100644 docs/source/todo.rst diff --git a/docs/source/conf.py b/docs/source/conf.py index 496c3de..cc77501 100644 --- a/docs/source/conf.py +++ b/docs/source/conf.py @@ -33,16 +33,37 @@ # extensions coming with Sphinx (named 'sphinx.ext.*') or your custom # ones. extensions = ['sphinx.ext.autodoc', + 'sphinx.ext.coverage', 'sphinx.ext.doctest', + 'sphinx.ext.extlinks', + 'sphinx.ext.intersphinx', 'sphinx.ext.todo', 'sphinx.ext.mathjax', 'sphinx.ext.viewcode', 'sphinx.ext.napoleon'] napoleon_google_docstring = False +napoleon_numpy_docstring = True +napoleon_include_private_with_doc = True napoleon_use_param = False napoleon_use_ivar = True +# Link shortcuts - see: http://www.sphinx-doc.org/en/stable/ext/extlinks.html +extlinks = {} + +# Intersphinx Mapping to link to external sphinx documentation +intersphinx_mapping = { + 'python': ('https://docs.python.org/3.6', None), + 'numpy': ('https://docs.scipy.org/doc/numpy-1.13.0/', None), + 'pyqtgraph': ('http://pyqtgraph.org/documentation', None), + 'pytables': ('https://www.pytables.org', None), + 'pyqt': ('http://pyqt.sourceforge.net/Docs/PyQt5', None) +} +# Note: the pyqt interlink won't work correctly as the namespaces are all +# under :sip: in the objects.inv from the documentation site. +# See: https://github.com/MSLNZ/msl-qt/blob/master/docs/create_pyqt_objects.py +# for a possible solution + # Set whether module paths are prepended to class objects in doc. add_module_names = False @@ -70,7 +91,7 @@ # The short X.Y version. version = '0.1' # The full version, including alpha/beta/rc tags. -release = '0.1' +release = '0.1a' # The language for content autogenerated by Sphinx. Refer to documentation # for a list of supported languages. @@ -184,10 +205,12 @@ # -- Options for Autodoc plugin ------------------------------------------- -# Set sort type for auto documented members, select from 'alphabetical', 'groupwise', -# or 'bysource' +# Set sort type for auto documented members, select from 'alphabetical', +# 'groupwise', or 'bysource' autodoc_member_order = 'bysource' # Autodoc directives automatically applied autodoc_default_flags = ['members'] +# -- Options for Doc Coverage extension ----------------------------------- +coverage_skip_undoc_in_source = False diff --git a/docs/source/contributing.rst b/docs/source/contributing.rst index 5fb33e4..033c490 100644 --- a/docs/source/contributing.rst +++ b/docs/source/contributing.rst @@ -97,6 +97,9 @@ be done with a fast-forward. This way we record the existence of the feature branch even after it has been deleted, and it groups all of the relevant commits for this feature. +Note that pull-requests into develop require passing Continuous Integration +(CI) builds on Travis.ci and AppVeyor, and at least one approved review. + Code standards -------------- *DGP* uses the PEP8_ standard. In particular, that means: @@ -125,10 +128,17 @@ All tests should go to the ``tests`` subdirectory. We suggest looking to any of the examples in that directory to get ideas on how to write tests for the code that you are adding or modifying. -*DGP* uses the unittest_ framework for unit testing and coverage.py_ to gauge the +*DGP* uses the pytest_ framework for unit testing and coverage.py_ to gauge the effectiveness of tests by showing which parts of the code are being executed -by tests, and which are not. +by tests, and which are not. The pytest-cov_ extension is used in conjunction +with Py.Test and coverage.py to generate coverage reports after executing the +test suite. + +Continuous integration will also run the test-suite with coverage, and report +the coverage statistics to `Coveralls `__ +.. _pytest: https://docs.pytest.org/ +.. _pytest-cov: https://pytest-cov.readthedocs.io/ .. _unittest: https://docs.python.org/3/library/unittest.html .. _coverage.py: https://coverage.readthedocs.io/en/coverage-4.4.1/ @@ -136,8 +146,16 @@ Running the test suite ++++++++++++++++++++++ The test suite can be run from the repository root:: + pytest --cov=dgp tests + # or coverage run --source=dgp -m unittest discover +Add the following parameter to display lines missing coverage when using the +pytest-cov extension:: + + --cov-report term-missing + + Use ``coverage report`` to report the results on test coverage:: $ coverage report -m @@ -163,11 +181,21 @@ other things to know about the docs: while the documentation in this folder consists of tutorials, planning, and technical documents related data formats, sensors, and processing techniques. -- The docstrings in this project follow the `NumPy docstring standard`_. +- The docstrings in this project follow the `NumPydoc docstring standard`_. This standard specifies the format of the different sections of the docstring. See `this document`_ for a detailed explanation and examples. -.. _`NumPy docstring standard`: https://github.com/numpy/numpy/blob/master/doc/HOWTO_DOCUMENT.rst.txt#docstring-standard +- See `Quick reStructuredText `__ + for a quick-reference on reStructuredText syntax and markup. + +- Documentation can also contain cross-references to other + classes/objects/modules using the `Sphinx Domain Reference Syntax `__ + +- Documentation is automatically built on push for designated branches + (typically master and develop) and hosted on `Read the Docs `__ + +.. _`NumPydoc docstring standard`: https://numpydoc.readthedocs.io/en/latest/ .. _`this document`: http://sphinxcontrib-napoleon.readthedocs.io/en/latest/example_numpy.html Building the documentation @@ -182,3 +210,9 @@ or on Windows run:: If the build completes without errors, then you will find the HTML output in ``dgp/docs/build/html``. + +Alternately, documentation can be built by calling the sphinx python module +e.g.:: + + python -m sphinx -M html source build + diff --git a/docs/source/core/controllers.rst b/docs/source/core/controllers.rst index c824f1a..710e9e6 100644 --- a/docs/source/core/controllers.rst +++ b/docs/source/core/controllers.rst @@ -19,6 +19,49 @@ layer by which the UI interacts with the underlying project data. TODO: Add Controller Hierarchy like in models.rst +Controller Development Principles +--------------------------------- + +Controllers typically should match 1:1 a model class, though there are cases +for creating utility controllers such as the :class:`ProjectFolder` which is +a utility class for grouping items visually in the project's tree view. + +Controllers should at minimum subclass :class:`IBaseController` which configures +inheritance for :class:`QStandardItem` and :class:`AttributeProxy`. For more +complex and widely used controllers, a dedicated interface should be created +following the same naming scheme - particularly where circular dependencies +may be introduced. + + +Context Menu Declarations +^^^^^^^^^^^^^^^^^^^^^^^^^ + +Due to the nature of :class:`QMenu`, the menu cannot be instantiated directly +ahead of time as it requires a parent :class:`QWidget` to bind to. This has +led to the current solution which lets each controller declaratively define +their context menu items and actions (with some common actions mixed in by +the view at runtime). +The declaration syntax at present is simply a list of tuples which is queried +by the view when a context menu is requested. + +Following is an example declaring a single menu item to be displayed when +right-clicking on the controller's representation in the UI + +.. code-block:: python + + bindings = [ + ('addAction', ('Properties', lambda: self._show_properties())), + ] + +The menu is built by iterating through the bindings list, each 2-tuple is a +tuple of the QMenu function to call ('addAction'), and the positional +arguments supplied to the function - in this case the name 'Properties', and +the lambda functor to call when activated. + +.. contents:: + :depth: 2 + + Interfaces ---------- @@ -83,17 +126,16 @@ Controllers :undoc-members: :show-inheritance: -.. py:module:: dgp.core.controllers.datafile_controller -.. autoclass:: DataFileController +.. py:module:: dgp.core.controllers.dataset_controller +.. autoclass:: DataSetController :undoc-members: :show-inheritance: -.. py:module:: dgp.core.controllers.flightline_controller -.. autoclass:: FlightLineController +.. py:module:: dgp.core.controllers.datafile_controller +.. autoclass:: DataFileController :undoc-members: :show-inheritance: - Utility/Helper Modules ---------------------- @@ -103,5 +145,3 @@ Utility/Helper Modules .. automodule:: dgp.core.controllers.controller_helpers :undoc-members: - - diff --git a/docs/source/core/data-management.rst b/docs/source/core/data-management.rst new file mode 100644 index 0000000..cb6358d --- /dev/null +++ b/docs/source/core/data-management.rst @@ -0,0 +1,28 @@ +Data Management in DGP +====================== + +DGP manages and interacts with a variety of forms of Data. +Imported raw data (GPS or Gravity) is ingested and maintained internally as a +:class:`pandas.DataFrame` or :class:`pandas.Series` from their raw +representation in comma separated value (CSV) files. +The ingestion process performs type-casts, filling/interpolation of missing +values, and time index creation/conversion functions to result in a +ready-to-process DataFrame. + +These DataFrames are then stored in the project's HDF5_ data-file, which +natively supports (with PyTables_ and Pandas) the storage and retrieval of +DataFrames and Series. + +.. _HDF5: https://portal.hdfgroup.org/display/support +.. _PyTables: https://www.pytables.org/ + +To facilitate storage and retrieval of data within the project, the +:class:`~dgp.core.hdf5_manager.HDF5Manager` class provides an easy to use +wrapper around the :class:`pandas.HDFStore` and provides utility methods +for getting/setting meta-data attributes on nodes. + +.. py:module:: dgp.core.hdf5_manager + +.. autoclass:: HDF5Manager + :undoc-members: + :private-members: diff --git a/docs/source/core/models.rst b/docs/source/core/models.rst index 3acb5fd..6d827d3 100644 --- a/docs/source/core/models.rst +++ b/docs/source/core/models.rst @@ -1,11 +1,13 @@ dgp.core.models package ======================= -The dgp.core.models package contains and defines the various -data classes that define the logical structure of a 'Gravity Project' +The models package contains and defines the various data classes that define +the logical structure of a 'Gravity Project' Currently we are focused exclusively on providing functionality for -representing and processing an Airborne Gravity Survey/Campaign. +representing and processing an Airborne gravity survey/campaign. +In future support will be added for processing and managing Marine gravity +survey's/campaigns. The following generally describes the class hierarchy of a typical Airborne project: @@ -14,19 +16,52 @@ The following generally describes the class hierarchy of a typical Airborne proj | :obj:`~.project.AirborneProject` | ├── :obj:`~.flight.Flight` -| │ ├── :obj:`~.flight.FlightLine` -| │ ├── :obj:`~.data.DataFile` -- Gravity -| │ └── :obj:`~.data.DataFile` -- Trajectory -| │ └── :obj:`~.meter.Gravimeter` +| │ ├── :obj:`~.dataset.DataSet` +| │ │ ├── :obj:`~.data.DataFile` -- Gravity +| │ │ ├── :obj:`~.data.DataFile` -- Trajectory +| │ │ └── :obj:`~.dataset.DataSegment` -- Container (Multiple) +| │ └── :obj:`~.meter.Gravimeter` -- Link | └── :obj:`~.meter.Gravimeter` ----------------------------------------- -The project can have multiple :obj:`~.flight.Flight`, and each Flight can have 0 or more -:obj:`~.flight.FlightLine`, :obj:`~.data.DataFile`, and linked :obj:`~.meter.Gravimeter`. +The project can have multiple :obj:`~.flight.Flight`, and each Flight can have +0 or more :obj:`~.flight.FlightLine`, :obj:`~.data.DataFile`, and linked +:obj:`~.meter.Gravimeter`. The project can also define multiple Gravimeters, of varying type with specific configuration files assigned to each. +Model Development Principles +---------------------------- + +- Classes in the core models should be kept as simple as possible. +- :class:`@properties` (getter/setter) are encouraged where state updates must + accompany a value change +- Otherwise, simple attributes/fields are preferred +- Models may contain back-references (upwards in the hierarchy) only to their + parent (using the 'magic' parent attribute) - otherwise the JSON serializer + will complain. +- Any complex functions/transformations should be handled by the model's + controller +- Data validation should be handled by the controller, not the model. +- A limited set of complex objects can be used and serialized in the model, + support may be added as the need arises in the JSON serializer. +- Any field defined in a model's :attr:`__dict__` or :attr:`__slots__` is + serialization by the ProjectEncoder, and consequently must be accepted + by name (keyword argument) in the model constructor for de-serialization + +Supported Complex Types +^^^^^^^^^^^^^^^^^^^^^^^ + +- :class:`pathlib.Path` +- :class:`datetime.datetime` +- :class:`datetime.date` +- :class:`dgp.core.oid.OID` +- All classes in :mod:`dgp.core.models` + +See :class:`~dgp.core.models.project.ProjectDecoder` and +:class:`~dgp.core.models.project.ProjectEncoder` for implementation details. + .. contents:: :depth: 2 @@ -66,9 +101,18 @@ dgp.core.models.flight module :undoc-members: dgp.core.models.data module ------------------------------- +--------------------------- .. automodule:: dgp.core.models.data :members: :undoc-members: +dgp.core.models.dataset module +------------------------------ + +.. versionadded:: 0.1.0 +.. automodule:: dgp.core.models.dataset + :members: + :undoc-members: + + diff --git a/docs/source/index.rst b/docs/source/index.rst index d6a1a19..7251bdb 100644 --- a/docs/source/index.rst +++ b/docs/source/index.rst @@ -1,8 +1,39 @@ Welcome to Dynamic Gravity Processor's documentation! ===================================================== +What is DGP? +^^^^^^^^^^^^ + +**DGP** is a library as well a graphical desktop application for processing +gravity data collected with dynamic gravity systems, such as those run on +ships and aircraft. + +The library can be used to automate the processing workflow and experiment with +new techniques. The application was written to fulfill the needs of of gravity +processing in production environments. + +The project aims to bring all gravity data processing under a single umbrella by: + +- accommodating various sensor types, data formats, and processing techniques +- providing a flexible framework to allow for experimentation with the workflow +- providing a robust and efficient system for production-level processing + +Core Dependencies ++++++++++++++++++ + +(Subject to change) + +- Python >= 3.6 +- numpy >= 1.13.1 +- pandas == 0.20.3 +- scipy == 1.1.0 +- pyqtgraph >= 0.10.0 +- PyQt5 >= 5.10 +- PyTables >= 3.4.2 + .. toctree:: :caption: Getting Started + :maxdepth: 1 install.rst userguide.rst @@ -13,12 +44,14 @@ Welcome to Dynamic Gravity Processor's documentation! core/index.rst lib/index.rst gui/index.rst + core/data-management.rst .. toctree:: :caption: Development contributing.rst - + requirements-specification-include.rst + todo.rst Indices and tables ================== diff --git a/docs/source/requirements-specification-include.rst b/docs/source/requirements-specification-include.rst new file mode 100644 index 0000000..41ed175 --- /dev/null +++ b/docs/source/requirements-specification-include.rst @@ -0,0 +1 @@ +.. include:: ../../requirements-specification.rst diff --git a/docs/source/todo.rst b/docs/source/todo.rst new file mode 100644 index 0000000..e5c7dc4 --- /dev/null +++ b/docs/source/todo.rst @@ -0,0 +1,4 @@ +Documentation ToDo's +==================== + +.. todolist:: diff --git a/docs/source/userguide.rst b/docs/source/userguide.rst index 93d2825..f9d8727 100644 --- a/docs/source/userguide.rst +++ b/docs/source/userguide.rst @@ -1,5 +1,59 @@ User Guide ========== -TODO: Write documentation/tutorial on how to use the application, -targeted at actual users, not developers. +.. todo:: Write documentation/tutorial on how to use the application, + targeted at actual users, not developers. + +Creating a new project +---------------------- + + +Project Structure (Airborne) +++++++++++++++++++++++++++++ + +An Airborne gravity project in DGP is centered primarily around the +:obj:`Flight` construct as a representation of an actual survey flight. A +flight has at least one :obj:`DataSet` containing Trajectory (GPS) and Gravity +data files, and at least one associated :obj:`Gravimeter`. + +A :obj:`Flight` may potentially have more than one :obj:`DataSet` associated +with it, and more than one :obj:`Gravimeter`. + +Each DataSet has exactly one Trajectory and one Gravity DataFile contained +within it, and the :obj:`DataSet` may define :obj:`DataSegments` which are +directly associated with the encapsulated files. + +DataSegments are used to select areas of data which are of interest for +processing, typically this means they are used to select the individual +Flight Lines out of a continuous data file, i.e. the segments between course +changes of the aircraft. + + + + +Creating Flights/Survey's +------------------------- + + +Importing Gravimeter (Sensor) Configurations +-------------------------------------------- + + +Importing Gravity/Trajectory (GPS) Data +--------------------------------------- + + + +Data Processing Workflow +------------------------ + +Selecting Survey Lines +++++++++++++++++++++++ + + +Selecting/Applying Transformation Graphs +++++++++++++++++++++++++++++++++++++++++ + + +Viewing Line Repeats +++++++++++++++++++++ diff --git a/requirements-specification.rst b/requirements-specification.rst index 50b4734..3d46455 100644 --- a/requirements-specification.rst +++ b/requirements-specification.rst @@ -1,9 +1,6 @@ -====================================== -Gravity Processing and Analysis System -====================================== ------------------------------------ +=================================== Software Requirements Specification ------------------------------------ +=================================== Overall Description =================== @@ -29,114 +26,133 @@ Functional Requirements ======================= 1. FR1 + - Description: The user shall be able to import gravity data. The user shall be able to choose file type and define the format. - Priority: High - Rationale: Required to process gravity data. Allowing the user to define the type and format reduces future work to incorporate other sensors or changes to file types and formats. - Dependencies: None 2. FR2 + - Description: The user shall be able to import position and attitude data. The user shall be able to choose file type and define the format. - Priority: High - Rationale: Required to process gravity data. Allowing the user to define the type and format reduces future work to incorporate other sensors or changes to file types and formats. - Dependencies: None 4. FR4 + - Description: The user shall be able to organize data by project and flight. - Priority: High - Rationale: This is a standard organizing principle. - Dependencies: None 5. FR5 + - Description: The user shall be able to import and compare multiple trajectories for a flight. - Priority: Medium - Rationale: For comparison of INS hardware and post-processing methods. - Dependencies: None 6. FR6 + - Description: The user shall be able to combine and analyze data across projects and flights. - Priority: Medium - Rationale: For comparison of line reflown, or to produce a grid of lines flown for a survey, for example. - Dependencies: None 7. FR7 + - Description: The user shall be able to select sections of a flight for processing. - Priority: High - Rationale: Necessary to properly process gravity. - Dependencies: None 8. FR8 + - Description: The user shall be able to plot all corrections. - Priority: High - Rationale: For troubleshooting, for example. - Dependencies: None 9. FR9 + - Description: The user shall be able to choose to plot any channel. - Priority: High - Rationale: For quality control of data, diagnostics, and performance assessment. - Dependencies: None 10. FR10 + - Description: The user shall be able to compare with lines and grids processed externally. - Priority: Medium - Rationale: For quality control of data, diagnostics, and performance assessment. - Dependencies: None 11. FR11 + - Description: The user shall be able to export data. The user shall be able to choose file type and define the format. - Priority: High - Rationale: For further processing or use in another system. - Dependencies: None 12. FR12 + - Description: The user shall be able to specify sensor-specific parameters. - Priority: High - Rationale: Required to process gravity data. - Dependencies: None 13. FR13 + - Description: The user shall be able to plot flight track on a map. - Priority: High - Rationale: To facilitate selection of sections for processing. - Dependencies: FR2 14. FR14 + - Description: The user shall be able to import a background image or data set as the background for the map. - Priority: Low - Rationale: To facilitate selection of sections for processing. - Dependencies: FR13 15. FR15 + - Description: The user shall be able to choose the method used to filter data and any associated parameters. - Priority: High - Rationale: To facilitate comparison of processing methods. - Dependencies: None 16. FR16 + - Description: The user shall be able to compute statistics for any channel. - Priority: High - Rationale: For quality control of data, diagnostics, and performance assessment. - Dependencies: 17. FR17 + - Description: The user shall be able to perform cross-over analysis. - Priority: Medium - Rationale: For quality control at the level of a whole survey. - Dependencies: 18. FR18 + - Description: The user shall be able to perform upward continuation. - Priority: Low - Rationale: For quality control at the level of a whole survey. - Dependencies: 19. FR19 + - Description: The user shall ble able to flag bad data within lines and choose whether to exclude from processing. - Priority: High - Rationale: For quality control of data, diagnostics, and performance assessment. - Dependencies: 20. FR20 + - Description: The user shall be able to import outside data sets (e.g., SRTM, geoid) for comparison with flown gravity. - Priority: High - Rationale: For quality control of data, diagnostics, and performance assessment. From 12ce73d8dadbcc528ae3f374fb9a7c40536839fb Mon Sep 17 00:00:00 2001 From: bradyzp Date: Sat, 14 Jul 2018 19:43:47 -0600 Subject: [PATCH 139/236] Suppress PyTables warnings due to mixed column types (NaN's) --- dgp/core/hdf5_manager.py | 5 +++++ 1 file changed, 5 insertions(+) diff --git a/dgp/core/hdf5_manager.py b/dgp/core/hdf5_manager.py index c2d3d58..45cb741 100644 --- a/dgp/core/hdf5_manager.py +++ b/dgp/core/hdf5_manager.py @@ -1,14 +1,19 @@ # -*- coding: utf-8 -*- import logging +import warnings from pathlib import Path from typing import Any import tables +import pandas.io.pytables from pandas import HDFStore, DataFrame from dgp.core.models.data import DataFile __all__ = ['HDF5Manager'] +# Suppress PyTables warnings due to mixed data-types (typically NaN's in cols) +warnings.filterwarnings('ignore', + category=pandas.io.pytables.PerformanceWarning) # Define Data Types/Extensions HDF5_NAME = 'dgpdata.hdf5' From 89da3d7ce020e80dbcb2180943178acff39d5200 Mon Sep 17 00:00:00 2001 From: Zachery Brady Date: Tue, 17 Jul 2018 14:43:45 -0600 Subject: [PATCH 140/236] Changes for PR #69 Added Docstring for Flight, GravityProject, and AirborneProject classes Removed the attributes functionality from GravityProject, unneeded. Fixed inconsistent use of string formatting in project.py, oid.py. Using .format or f-strings now that we are no longer targetting Python <= 3.5.x --- dgp/core/models/flight.py | 34 ++++++++++++++-- dgp/core/models/project.py | 80 ++++++++++++++++++++++++------------- dgp/core/oid.py | 4 +- tests/test_models.py | 22 ---------- tests/test_serialization.py | 19 --------- 5 files changed, 85 insertions(+), 74 deletions(-) diff --git a/dgp/core/models/flight.py b/dgp/core/models/flight.py index 87ac98b..5853037 100644 --- a/dgp/core/models/flight.py +++ b/dgp/core/models/flight.py @@ -9,9 +9,35 @@ class Flight: """ - Version 2 Flight Class - Designed to be de-coupled from the view implementation - Define a Flight class used to record and associate data with an entire - survey flight (takeoff -> landing) + Flight base model (Airborne Project) + + The Flight is one of the central components of an Airborne Gravity Project, + representing a single gravity survey flight (takeoff -> landing). + The :class:`Flight` contains meta-data common to the overall flight + date flown, duration, notes, etc. + + The Flight is also the parent container for 1 or more :class:`DataSet`s + which group the Trajectory and Gravity data collected during a flight, and + can define segments of data (flight lines), based on the flight path. + + Parameters + ---------- + name : str + Flight name/human-readable reference + date : :class:`datetime`, optional + Optional, specify the date the flight was flown, if not specified, + today's date is used. + notes : str, optional + Optional, add/specify flight specific notes + sequence : int, optional + Optional, specify flight sequence within context of an airborne campaign + duration : int, optional + Optional, specify duration of the flight in hours + meter : str, Optional + Not yet implemented - associate a meter with this flight + May be deprecated in favor of associating a Gravimeter with DataSets + within the flight. + """ __slots__ = ('uid', 'name', 'datasets', 'meter', 'date', 'notes', 'sequence', 'duration', '_parent') @@ -43,4 +69,4 @@ def __str__(self) -> str: return self.name def __repr__(self) -> str: - return '' % (self.name, self.uid) + return f'' diff --git a/dgp/core/models/project.py b/dgp/core/models/project.py index d5dca3a..85bd9f0 100644 --- a/dgp/core/models/project.py +++ b/dgp/core/models/project.py @@ -154,8 +154,8 @@ def object_hook(self, json_o: dict): # Handle project entity types klass = {self._klass.__name__: self._klass, **project_entities}.get(_type, None) if klass is None: # pragma: no cover - raise AttributeError("Unhandled class %s in JSON data. Class is not defined" - " in entity map." % _type) + raise AttributeError(f"Unhandled class {_type} in JSON data. Class is not defined" + f" in entity map.") instance = klass(**params) if parent is not None: self._child_parent_map[instance.uid] = parent @@ -164,6 +164,43 @@ def object_hook(self, json_o: dict): class GravityProject: + """GravityProject base class. + + This class is not designed to be instantiated directly, but is used + as the common base-class for Airborne Gravity Projects, and in future Marine + Gravity Projects. + + This base class stores common attributes such as the Project name, + description, path, and Gravimeters (which all Gravity Projects may use). + + Modification time is tracked on the project, and any mutations made via + properties in this class will update the modify time. + + The GravityProject class also provides the utility to_json/from_json methods + which should work with any child classes. The JSON serialization methods + simply call the appropriate :class:`ProjectEncoder` or + :class:`ProjectDecoder` to serialize/de-serialize the project respectively. + + Parameters + ---------- + name : str + Name of the project + path : :class:`Path` + Directory path where the project is located + description : str, optional + Optional, description for the project + create_date : :class:`datetime`, optional + Specify creation date of the project, current UTC time is used if None + modify_date : :class:`datetime`, optional + This parameter should be used only during the de-serialization process, + otherwise the modification date is automatically handled by the class + properties. + + See Also + -------- + :class:`AirborneProject` + + """ def __init__(self, name: str, path: Union[Path], description: Optional[str] = None, create_date: Optional[datetime.datetime] = None, modify_date: Optional[datetime.datetime] = None, @@ -178,7 +215,6 @@ def __init__(self, name: str, path: Union[Path], description: Optional[str] = No self.modify_date = modify_date or datetime.datetime.utcnow() self._gravimeters = kwargs.get('gravimeters', []) # type: List[Gravimeter] - self._attributes = kwargs.get('attributes', {}) # type: Dict[str, Any] @property def name(self) -> str: @@ -196,6 +232,7 @@ def path(self) -> Path: @path.setter def path(self, value: str) -> None: self._path = Path(value) + self._modify() @property def description(self) -> str: @@ -228,30 +265,7 @@ def remove_child(self, child_id: OID) -> bool: return False def __repr__(self): - return '<%s: %s/%s>' % (self.__class__.__name__, self.name, str(self.path)) - - # TODO: Are these useful, or just fluff that should be removed - def set_attr(self, key: str, value: Union[str, int, float, bool]) -> None: - """Permit explicit meta-date attributes. - We don't use the __setattr__ override as it complicates instance - attribute use within the Class and Sub-classes for no real gain. - """ - self._attributes[key] = value - - def get_attr(self, key: str) -> Union[str, int, float, bool]: - """For symmetry with set_attr""" - return self._attributes[key] - - def __getattr__(self, item): - # Intercept attribute calls that don't exist - proxy to _attributes - try: - return self._attributes[item] - except KeyError: - # hasattr/getattr expect an AttributeError if attribute doesn't exist - raise AttributeError - - def __getitem__(self, item): - return self._attributes[item] + return f'<{self.__class__.__name__}: {self.name}/{self.path!s}>' # Protected utility methods def _modify(self): @@ -275,6 +289,18 @@ def to_json(self, to_file=False, indent=None) -> Union[str, bool]: class AirborneProject(GravityProject): + """AirborneProject class + + This class is a sub-class of :class:`GravityProject` and simply extends the + functionality of the base GravityProject, allowing the addition/removal + of :class:`Flight` objects, in addition to :class:`Gravimeter`s + + Parameters + ---------- + kwargs + See :class:`GravityProject` for permitted key-word arguments. + + """ def __init__(self, **kwargs): super().__init__(**kwargs) self._flights = kwargs.get('flights', []) diff --git a/dgp/core/oid.py b/dgp/core/oid.py index 4c9ce03..37f199d 100644 --- a/dgp/core/oid.py +++ b/dgp/core/oid.py @@ -29,7 +29,7 @@ def base_uuid(self): @property def uuid(self): - return '%s_%s' % (self.group, self._base_uuid) + return f'{self.group}_{self._base_uuid}' @property def reference(self) -> object: @@ -49,7 +49,7 @@ def __str__(self): return self.uuid def __repr__(self): - return "" % (self._tag, self.uuid, self.group) + return f'' def __eq__(self, other: Union['OID', str]) -> bool: if isinstance(other, str): diff --git a/tests/test_models.py b/tests/test_models.py index c43b9d4..0158c08 100644 --- a/tests/test_models.py +++ b/tests/test_models.py @@ -46,28 +46,6 @@ def test_flight_actions(make_flight): assert '' % (f1_name, f1.uid) == repr(f1) -def test_project_attr(project: AirborneProject): - assert "TestProject" == project.name - project.name = " Project With Whitespace " - assert "Project With Whitespace" == project.name - - assert "Description of TestProject" == project.description - project.description = " Description with gratuitous whitespace " - time.sleep(.1) - assert abs(datetime.utcnow() - project.modify_date).microseconds > 0 - assert "Description with gratuitous whitespace" == project.description - - project.set_attr('tie_value', 1234) - assert 1234 == project.tie_value - assert 1234 == project['tie_value'] - assert 1234 == project.get_attr('tie_value') - - project.set_attr('_my_private_val', 2345) - assert 2345 == project._my_private_val - assert 2345 == project['_my_private_val'] - assert 2345 == project.get_attr('_my_private_val') - - def test_project_path(project: AirborneProject, tmpdir): assert isinstance(project.path, Path) new_path = Path(tmpdir).joinpath("new_prj_path") diff --git a/tests/test_serialization.py b/tests/test_serialization.py index 75e0fce..09d5c7d 100644 --- a/tests/test_serialization.py +++ b/tests/test_serialization.py @@ -19,19 +19,12 @@ def test_project_serialize(project: AirborneProject, tmpdir): _description = "Description for project that will be serialized." project.description = _description - project.set_attr('start_tie_value', 1234.90) - project.set_attr('end_tie_value', 987) encoded = project.to_json(indent=4) decoded_dict = json.loads(encoded) - # pprint(decoded_dict) assert project.name == decoded_dict['name'] assert {'_type': 'Path', 'path': str(project.path.resolve())} == decoded_dict['path'] - assert 'start_tie_value' in decoded_dict['attributes'] - assert 1234.90 == decoded_dict['attributes']['start_tie_value'] - assert 'end_tie_value' in decoded_dict['attributes'] - assert 987 == decoded_dict['attributes']['end_tie_value'] for flight_obj in decoded_dict['flights']: assert '_type' in flight_obj and flight_obj['_type'] == 'Flight' @@ -47,17 +40,6 @@ def test_project_serialize(project: AirborneProject, tmpdir): def test_project_deserialize(project: AirborneProject): - attrs = { - 'attr1': 12345, - 'attr2': 192.201, - 'attr3': False, - 'attr4': "Notes on project" - } - for key, value in attrs.items(): - project.set_attr(key, value) - - assert attrs == project._attributes - flt1 = project.flights[0] flt2 = project.flights[1] @@ -67,7 +49,6 @@ def test_project_deserialize(project: AirborneProject): re_serialized = prj_deserialized.to_json(indent=4) assert serialized == re_serialized - assert attrs == prj_deserialized._attributes assert project.create_date == prj_deserialized.create_date flt_names = [flt.name for flt in prj_deserialized.flights] From b67cefe45bf78c1c474ad52d91b7c501764b04c2 Mon Sep 17 00:00:00 2001 From: Zachery Brady Date: Wed, 18 Jul 2018 10:01:39 -0600 Subject: [PATCH 141/236] FIX: Fix inconsistent API use between Project/Flight Project Controller was mistakenly not updated to new API scheme/signature for remove_child functionality - which now accepts an OID to match against, as opposed to the old version which accepted a Flight object and row number where it was located within its parent's structure. Project controller remove_child now correctly raises exception if no child is found given the UID. FIX: Correct invalid absolute imports. Fix absolute imports statements defined without full import path which could cause import errors depending on the working directory/python path of the runtime environment. --- dgp/core/controllers/project_controllers.py | 13 ++++++++----- dgp/gui/main.py | 2 +- dgp/gui/views/ProjectTreeView.py | 2 +- dgp/gui/workspace.py | 2 +- tests/test_controllers.py | 8 ++++---- 5 files changed, 15 insertions(+), 12 deletions(-) diff --git a/dgp/core/controllers/project_controllers.py b/dgp/core/controllers/project_controllers.py index 8dcee40..48f6d1a 100644 --- a/dgp/core/controllers/project_controllers.py +++ b/dgp/core/controllers/project_controllers.py @@ -153,16 +153,19 @@ def add_child(self, child: Union[Flight, Gravimeter]) -> Union[FlightController, self.update() return controller - def remove_child(self, child: Union[Flight, Gravimeter], row: int, confirm=True): - if not isinstance(child, (Flight, Gravimeter)): - raise ValueError("{0!r} is not a valid child object".format(child)) + def remove_child(self, uid: Union[OID, str], confirm: bool = True): + child = self.get_child(uid) + if child is None: + self.log.warning(f'UID {uid!s} has no corresponding object in this ' + f'project') + raise KeyError(f'{uid!s}') if confirm: # pragma: no cover if not confirm_action("Confirm Deletion", "Are you sure you want to delete {!s}" - .format(child.name)): + .format(child.get_attr('name'))): return self.project.remove_child(child.uid) - self._child_map[type(child)].removeRow(row) + self._child_map[type(child.datamodel)].removeRow(child.row()) self.update() def get_child(self, uid: Union[str, OID]) -> Union[FlightController, GravimeterController, None]: diff --git a/dgp/gui/main.py b/dgp/gui/main.py index 56a4972..6df7098 100644 --- a/dgp/gui/main.py +++ b/dgp/gui/main.py @@ -14,7 +14,7 @@ import dgp.core.types.enumerations as enums from dgp.core.controllers.project_controllers import AirborneProjectController from dgp.core.controllers.flight_controller import FlightController -from core.controllers.project_treemodel import ProjectTreeModel +from dgp.core.controllers.project_treemodel import ProjectTreeModel from dgp.core.models.project import AirborneProject from dgp.gui.utils import (ConsoleHandler, LOG_FORMAT, LOG_LEVEL_MAP, LOG_COLOR_MAP, get_project_file) diff --git a/dgp/gui/views/ProjectTreeView.py b/dgp/gui/views/ProjectTreeView.py index 5b1ba78..cab81d2 100644 --- a/dgp/gui/views/ProjectTreeView.py +++ b/dgp/gui/views/ProjectTreeView.py @@ -7,7 +7,7 @@ from PyQt5.QtWidgets import QTreeView, QMenu from dgp.core.controllers.controller_interfaces import IFlightController, IAirborneController -from core.controllers.project_treemodel import ProjectTreeModel +from dgp.core.controllers.project_treemodel import ProjectTreeModel class ProjectTreeView(QTreeView): diff --git a/dgp/gui/workspace.py b/dgp/gui/workspace.py index 2fae052..7915d6a 100644 --- a/dgp/gui/workspace.py +++ b/dgp/gui/workspace.py @@ -8,7 +8,7 @@ import PyQt5.QtWidgets as QtWidgets import PyQt5.QtGui as QtGui -from core.controllers.flight_controller import FlightController +from dgp.core.controllers.flight_controller import FlightController from dgp.core.oid import OID from .workspaces import * diff --git a/tests/test_controllers.py b/tests/test_controllers.py index 8afb763..f2f1900 100644 --- a/tests/test_controllers.py +++ b/tests/test_controllers.py @@ -177,16 +177,16 @@ def test_airborne_project_controller(project): assert flight2 == fc2.datamodel assert 5 == project_ctrl.flights.rowCount() - project_ctrl.remove_child(flight2, fc2.row(), confirm=False) + project_ctrl.remove_child(flight2.uid, confirm=False) assert 4 == project_ctrl.flights.rowCount() assert project_ctrl.get_child(fc2.uid) is None assert 3 == project_ctrl.meters.rowCount() - project_ctrl.remove_child(meter, mc.row(), confirm=False) + project_ctrl.remove_child(meter.uid, confirm=False) assert 2 == project_ctrl.meters.rowCount() - with pytest.raises(ValueError): - project_ctrl.remove_child("Not a child", 2) + with pytest.raises(KeyError): + project_ctrl.remove_child("Not a child") jsons = project_ctrl.save(to_file=False) assert isinstance(jsons, str) From 867b343b8e66e2b43d30f071ad4801fa84f6ef34 Mon Sep 17 00:00:00 2001 From: Zachery Brady Date: Wed, 18 Jul 2018 15:28:02 -0600 Subject: [PATCH 142/236] TEST/FIX: Testing FlightController Bindings With the way Dialogs are currently generated for Flight context-menu actions it is not possible to non-interactively test them, however extracting the actions out of lambda functions within the bindings and into their own private functions makes the intent more clear. Also added a test to the FlightController that verifies the construction of the _bindings list/tuple for semantic errors, i.e. checking that QMenu declarations are valid attributes of QMenu, and that the 2-tuples are the correct dimension. --- dgp/core/controllers/flight_controller.py | 39 ++++++++++++++++------- tests/test_controllers.py | 32 ++++++++++++++++++- 2 files changed, 58 insertions(+), 13 deletions(-) diff --git a/dgp/core/controllers/flight_controller.py b/dgp/core/controllers/flight_controller.py index 1f7d54c..6ca0d2f 100644 --- a/dgp/core/controllers/flight_controller.py +++ b/dgp/core/controllers/flight_controller.py @@ -6,6 +6,7 @@ from PyQt5.QtCore import Qt from PyQt5.QtGui import QStandardItemModel, QStandardItem +from PyQt5.QtWidgets import QWidget from pandas import DataFrame from dgp.core.controllers.dataset_controller import DataSetController @@ -77,19 +78,17 @@ def __init__(self, flight: Flight, parent: IAirborneController = None): self._bindings = [ # pragma: no cover ('addAction', ('Add Dataset', lambda: None)), ('addAction', ('Set Active', - lambda: self.get_parent().set_active_child(self))), + lambda: self._activate_self())), ('addAction', ('Import Gravity', - lambda: self.get_parent().load_file_dlg( - DataTypes.GRAVITY, flight=self))), + lambda: self._load_file_dialog(DataTypes.GRAVITY))), ('addAction', ('Import Trajectory', - lambda: self.get_parent().load_file_dlg( - DataTypes.TRAJECTORY, flight=self))), + lambda: self._load_file_dialog(DataTypes.TRAJECTORY))), ('addSeparator', ()), - ('addAction', ('Delete <%s>' % self._flight.name, - lambda: self.get_parent().remove_child(self.uid, True))), - ('addAction', ('Rename Flight', lambda: self.set_name())), + ('addAction', (f'Delete {self._flight.name}', + lambda: self._delete_self(confirm=True))), + ('addAction', ('Rename Flight', lambda: self._set_name())), ('addAction', ('Properties', - lambda: AddFlightDialog.from_existing(self, self.get_parent()).exec_())) + lambda: self._show_properties_dlg())) ] self.update() @@ -206,7 +205,7 @@ def remove_child(self, uid: Union[OID, str], confirm: bool = True) -> bool: if child is not a :obj:`FlightLine` or :obj:`DataFile` """ - ctrl: Union[DataSetController, GravimeterController] = self.get_child(uid) + ctrl = self.get_child(uid) if type(ctrl) not in self._child_control_map.values(): raise TypeError("Invalid child uid supplied. Invalid child type.") if confirm: # pragma: no cover @@ -215,6 +214,8 @@ def remove_child(self, uid: Union[OID, str], confirm: bool = True) -> bool: self.get_parent().get_parent()): return False + if self._active_dataset == ctrl: + self._active_dataset = None self._flight.datasets.remove(ctrl.datamodel) self._child_map[type(ctrl.datamodel)].removeRow(ctrl.row()) return True @@ -227,11 +228,25 @@ def get_child(self, uid: Union[OID, str]) -> DataSetController: if item.uid == uid: return item - def set_name(self): # pragma: no cover - name = helpers.get_input("Set Name", "Enter a new name:", self._flight.name) + # Menu Action Handlers + def _activate_self(self): + self.get_parent().set_active_child(self) + + def _delete_self(self, confirm: bool = True): + self.get_parent().remove_child(self.uid, confirm) + + def _set_name(self, parent: QWidget = None): # pragma: no cover + name = helpers.get_input("Set Name", "Enter a new name:", + self.get_attr('name'), parent) if name: self.set_attr('name', name) + def _load_file_dialog(self, datatype: DataTypes): # pragma: no cover + self.get_parent().load_file_dlg(datatype, flight=self) + + def _show_properties_dlg(self): # pragma: no cover + AddFlightDialog.from_existing(self, self.get_parent()).exec_() + def __hash__(self): return hash(self._flight.uid) diff --git a/tests/test_controllers.py b/tests/test_controllers.py index f2f1900..9fba1ad 100644 --- a/tests/test_controllers.py +++ b/tests/test_controllers.py @@ -6,6 +6,7 @@ import pandas as pd from PyQt5.QtCore import Qt from PyQt5.QtGui import QStandardItemModel, QStandardItem +from PyQt5.QtWidgets import QWidget, QMenu from pandas import DataFrame from dgp.core.oid import OID @@ -117,13 +118,42 @@ def test_flight_controller(project: AirborneProject): with pytest.raises(TypeError): fc.set_active_dataset("not a child") + fc.set_active_dataset(dsc) + assert dsc == fc.get_active_dataset() fc.set_parent(None) with pytest.raises(TypeError): fc.remove_child("Not a real child", confirm=False) - fc.remove_child(dataset2.uid, confirm=False) + assert dsc2 == fc.get_child(dsc2.uid) + assert fc.remove_child(dataset2.uid, confirm=False) + assert fc.get_child(dataset2.uid) is None + + fc.remove_child(dsc.uid, confirm=False) + assert 0 == len(fc.datamodel.datasets) + assert fc.get_active_dataset() is None + + +def test_FlightController_bindings(project: AirborneProject): + prj_ctrl = AirborneProjectController(project) + fc0 = prj_ctrl.get_child(project.flights[0].uid) + + assert isinstance(fc0, FlightController) + + # Validate menu bindings + for binding in fc0.menu_bindings: + assert 2 == len(binding) + assert hasattr(QMenu, binding[0]) + + assert prj_ctrl.get_active_child() is None + fc0._activate_self() + assert fc0 == prj_ctrl.get_active_child() + assert fc0.is_active() + + assert fc0 == prj_ctrl.get_child(fc0.uid) + fc0._delete_self(confirm=False) + assert prj_ctrl.get_child(fc0.uid) is None def test_airborne_project_controller(project): From a801898b28bf0d5a5615d0675463450dd73ac339 Mon Sep 17 00:00:00 2001 From: Chris Bertinato Date: Sun, 22 Jul 2018 21:13:40 -0400 Subject: [PATCH 143/236] Update tables and pandas versions --- requirements.txt | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/requirements.txt b/requirements.txt index db106f3..aff020d 100644 --- a/requirements.txt +++ b/requirements.txt @@ -1,8 +1,8 @@ # Project Requirements matplotlib>=2.0.2 numpy>=1.13.1 -pandas==0.20.3 +pandas==0.23.3 PyQt5==5.11.2 pyqtgraph==0.10.0 -tables==3.4.2 +tables==3.4.4 scipy==1.1.0 From 468266020d364c4d0779a69d78a56fd6db386ad8 Mon Sep 17 00:00:00 2001 From: Chris Bertinato Date: Mon, 23 Jul 2018 09:33:36 -0400 Subject: [PATCH 144/236] Fixed round-off issue in indexes --- dgp/lib/trajectory_ingestor.py | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/dgp/lib/trajectory_ingestor.py b/dgp/lib/trajectory_ingestor.py index 83b7da4..a978802 100644 --- a/dgp/lib/trajectory_ingestor.py +++ b/dgp/lib/trajectory_ingestor.py @@ -7,9 +7,9 @@ """ import numpy as np import pandas as pd +from pandas.tseries.offsets import Milli from .time_utils import leap_seconds, convert_gps_time, datenum_to_datetime -from .etc import interp_nans TRAJECTORY_INTERP_FIELDS = {'lat', 'long', 'ell_ht'} @@ -97,6 +97,7 @@ def import_trajectory(filepath, delim_whitespace=False, interval=0, # create index if timeformat == 'sow': df.index = convert_gps_time(df['week'], df['sow'], format='datetime') + df.index = df.index.round(Milli()) df.drop(['sow', 'week'], axis=1, inplace=True) elif timeformat == 'hms': df.index = pd.to_datetime(df['mdy'].str.strip() + df['hms'].str.strip(), From 680bc8740aaeaece60c1372501443512d24ef6e4 Mon Sep 17 00:00:00 2001 From: Zachery Brady Date: Wed, 18 Jul 2018 11:27:31 -0600 Subject: [PATCH 145/236] Reworking signal/slot mechanism for projects Beginning of refactor for project signal/slot communication with MainWindow, with the eventual goal to cleanly support multiple projects opened within the main window. The ProjectTreeModel becomes the interface between the MainWindow and any child ProjectController's, where the Project Controllers can request actions (emit signals) via the model, and the MainWindow hooks into the signals defined by the model. --- dgp/core/controllers/project_controllers.py | 6 +- dgp/core/controllers/project_treemodel.py | 11 ++- dgp/gui/main.py | 85 ++++++++++++++------- dgp/gui/views/ProjectTreeView.py | 19 +++++ tests/conftest.py | 3 + tests/test_gui_main.py | 27 +++++++ 6 files changed, 120 insertions(+), 31 deletions(-) create mode 100644 tests/test_gui_main.py diff --git a/dgp/core/controllers/project_controllers.py b/dgp/core/controllers/project_controllers.py index 48f6d1a..fc5d856 100644 --- a/dgp/core/controllers/project_controllers.py +++ b/dgp/core/controllers/project_controllers.py @@ -8,7 +8,7 @@ from pprint import pprint from typing import Union, List -from PyQt5.QtCore import Qt, QProcess, QObject, QRegExp +from PyQt5.QtCore import Qt, QProcess, QObject, QRegExp, pyqtSignal from PyQt5.QtGui import QStandardItem, QBrush, QColor, QStandardItemModel, QIcon, QRegExpValidator from PyQt5.QtWidgets import QWidget from pandas import DataFrame @@ -41,7 +41,7 @@ MTR_ICON = ":/icons/meter_config.png" -class AirborneProjectController(IAirborneController, AttributeProxy): +class AirborneProjectController(IAirborneController): def __init__(self, project: AirborneProject): super().__init__(project.name) self.log = logging.getLogger(__name__) @@ -183,7 +183,7 @@ def set_active_child(self, child: IFlightController, emit: bool = True): ctrl.setBackground(BASE_COLOR) child.setBackground(ACTIVE_COLOR) if emit and self.model() is not None: # pragma: no cover - self.model().flight_changed.emit(child) + self.model().tabOpenRequested.emit(self, child) else: raise ValueError("Child of type {0!s} cannot be set to active.".format(type(child))) diff --git a/dgp/core/controllers/project_treemodel.py b/dgp/core/controllers/project_treemodel.py index ef52a03..edbea0c 100644 --- a/dgp/core/controllers/project_treemodel.py +++ b/dgp/core/controllers/project_treemodel.py @@ -19,11 +19,19 @@ class ProjectTreeModel(QStandardItemModel): flight_changed = pyqtSignal(IFlightController) # Fired on any project mutation - can be used to autosave project_changed = pyqtSignal() + tabOpenRequested = pyqtSignal(IFlightController) + tabCloseRequested = pyqtSignal(IFlightController) def __init__(self, project: AirborneProjectController, parent: Optional[QObject]=None): super().__init__(parent) self.appendRow(project) + def active_changed(self): + pass + + def close_flight(self, flight: IFlightController): + self.tabCloseRequested.emit(flight) + @pyqtSlot(QModelIndex, name='on_click') def on_click(self, index: QModelIndex): # pragma: no cover pass @@ -32,7 +40,8 @@ def on_click(self, index: QModelIndex): # pragma: no cover def on_double_click(self, index: QModelIndex): item = self.itemFromIndex(index) if isinstance(item, IFlightController): - item.get_parent().set_active_child(item) + item.get_parent().set_active_child(item, emit=False) + self.tabOpenRequested.emit(item.get_parent(), item) # Experiment diff --git a/dgp/gui/main.py b/dgp/gui/main.py index 6df7098..8f4dacc 100644 --- a/dgp/gui/main.py +++ b/dgp/gui/main.py @@ -12,6 +12,7 @@ from PyQt5.QtWidgets import QMainWindow, QProgressDialog, QFileDialog, QWidget import dgp.core.types.enumerations as enums +from dgp.core.controllers.controller_interfaces import IFlightController, IAirborneController from dgp.core.controllers.project_controllers import AirborneProjectController from dgp.core.controllers.flight_controller import FlightController from dgp.core.controllers.project_treemodel import ProjectTreeModel @@ -70,23 +71,9 @@ def __init__(self, project: AirborneProjectController, *args): self.project_tree.setModel(self.project_model) self.project_tree.expandAll() - # Set Stylesheet customizations for GUI Window, see: - # http://doc.qt.io/qt-5/stylesheet-examples.html#customizing-qtreeview - self.setStyleSheet(""" - QTreeView::item { - } - QTreeView::branch { - /*background: palette(base);*/ - } - QTreeView::branch:closed:has-children { - background: none; - image: url(:/icons/chevron-right); - } - QTreeView::branch:open:has-children { - background: none; - image: url(:/icons/chevron-down); - } - """) + # Support for multiple projects + self.projects = [project] + self.project_model.tabOpenRequested.connect(self._tab_open_requested) # Initialize Variables self.import_base_path = pathlib.Path('~').expanduser().joinpath( @@ -104,7 +91,7 @@ def _init_slots(self): """Initialize PyQt Signals/Slots for UI Buttons and Menus""" # Event Signals # - self.project_model.flight_changed.connect(self._flight_changed) + # self.project_model.flight_changed.connect(self._flight_changed) self.project_model.project_changed.connect(self._project_mutated) # File Menu Actions # @@ -130,7 +117,7 @@ def _init_slots(self): lambda: self.project.load_file_dlg(enums.DataTypes.GRAVITY, )) # Tab Browser Actions # - self.flight_tabs.tabCloseRequested.connect(self._tab_closed) + self.flight_tabs.tabCloseRequested.connect(self._tab_close_requested) self.flight_tabs.currentChanged.connect(self._tab_changed) # Console Window Actions # @@ -191,18 +178,62 @@ def show_status(self, text, level): if level.lower() == 'error' or level.lower() == 'info': self.statusBar().showMessage(text, self._default_status_timeout) - def add_tab(self, tab: QWidget): - pass + @pyqtSlot(IFlightController, name='_tab_open_requested') + def _tab_open_requested(self, flight): + """pyqtSlot(:class:`IFlightController`) - @pyqtSlot(FlightController, name='_flight_changed') - def _flight_changed(self, flight: FlightController): + Open a :class:`FlightTab` if one does not exist, else set the + FlightTab for the given :class:`IFlightController` to active + + """ if flight.uid in self._open_tabs: self.flight_tabs.setCurrentWidget(self._open_tabs[flight.uid]) else: - flt_tab = FlightTab(flight) - self._open_tabs[flight.uid] = flt_tab - idx = self.flight_tabs.addTab(flt_tab, flight.get_attr('name')) - self.flight_tabs.setCurrentIndex(idx) + tab = FlightTab(flight) + self._open_tabs[flight.uid] = tab + index = self.flight_tabs.addTab(tab, flight.get_attr('name')) + self.flight_tabs.setCurrentIndex(index) + + @pyqtSlot(IFlightController, name='_tab_close_requested') + def _tab_close_requested(self, flight): + """pyqtSlot(:class:`IFlightController`) + + Close/dispose of the tab for the supplied flight if it exists, else + do nothing. + + """ + if flight.uid in self._open_tabs: + self.log.debug(f'Tab close requested for flight ' + f'{flight.get_attr("name")}') + tab = self._open_tabs[flight.uid] + index = self.flight_tabs.indexOf(tab) + self.flight_tabs.removeTab(index) + del self._open_tabs[flight.uid] + + @pyqtSlot(int, name='_tab_close_requested') + def _tab_close_requested(self, index): + """pyqtSlot(int) + + Close/dispose of tab specified by int index. + This slot is used to handle user interaction when clicking the close (x) + button on an opened tab. + + """ + self.log.debug(f'Tab close requested for tab at index {index}') + tab = self.flight_tabs.widget(index) # type: FlightTab + del self._open_tabs[tab.uid] + self.flight_tabs.removeTab(index) + + + # @pyqtSlot(FlightController, name='_flight_changed') + # def _flight_changed(self, flight: FlightController): + # if flight.uid in self._open_tabs: + # self.flight_tabs.setCurrentWidget(self._open_tabs[flight.uid]) + # else: + # flt_tab = FlightTab(flight) + # self._open_tabs[flight.uid] = flt_tab + # idx = self.flight_tabs.addTab(flt_tab, flight.get_attr('name')) + # self.flight_tabs.setCurrentIndex(idx) @pyqtSlot(name='_project_mutated') def _project_mutated(self): diff --git a/dgp/gui/views/ProjectTreeView.py b/dgp/gui/views/ProjectTreeView.py index cab81d2..877d574 100644 --- a/dgp/gui/views/ProjectTreeView.py +++ b/dgp/gui/views/ProjectTreeView.py @@ -22,6 +22,25 @@ def __init__(self, parent: Optional[QObject]=None): self.setHeaderHidden(True) self.setObjectName('project_tree_view') self.setContextMenuPolicy(QtCore.Qt.DefaultContextMenu) + + # Set Stylesheet for Tree View, see: + # http://doc.qt.io/qt-5/stylesheet-examples.html#customizing-qtreeview + self.setStyleSheet(""" + QTreeView::item { + } + QTreeView::branch { + /*background: palette(base);*/ + } + QTreeView::branch:closed:has-children { + background: none; + image: url(:/icons/chevron-right); + } + QTreeView::branch:open:has-children { + background: none; + image: url(:/icons/chevron-down); + } + """) + self._action_refs = [] @staticmethod diff --git a/tests/conftest.py b/tests/conftest.py index 209d367..9016460 100644 --- a/tests/conftest.py +++ b/tests/conftest.py @@ -15,6 +15,9 @@ from dgp.lib.gravity_ingestor import read_at1a from dgp.lib.trajectory_ingestor import import_trajectory +# Import QApplication object for any Qt GUI test cases +from .context import APP + def get_ts(offset=0): return datetime.now().timestamp() + offset diff --git a/tests/test_gui_main.py b/tests/test_gui_main.py new file mode 100644 index 0000000..76b9ddd --- /dev/null +++ b/tests/test_gui_main.py @@ -0,0 +1,27 @@ +# -*- coding: utf-8 -*- + +# Test gui/main.py +import pytest +from PyQt5.QtWidgets import QMainWindow + +from dgp.core.controllers.project_controllers import AirborneProjectController +from dgp.gui.main import MainWindow + + +@pytest.fixture +def pctrl(project): + return AirborneProjectController(project) + + +def test_MainWindow_init(project): + prj_ctrl = AirborneProjectController(project) + window = MainWindow(prj_ctrl) + + assert isinstance(window, QMainWindow) + assert not window.isVisible() + assert prj_ctrl in window.projects + + +def test_MainWindow_register_project(project): + prj_ctrl = AirborneProjectController(project) + From e6d8c5c81153a7323eba468b8bc7030adce1160a Mon Sep 17 00:00:00 2001 From: Zachery Brady Date: Wed, 18 Jul 2018 13:41:48 -0600 Subject: [PATCH 146/236] Enhance MainWindow signalling Update ProjectTreeView click/select proxy to ProjectTreeModel Update signal connections in MainWindow to connect to project_model instead of first-instantiated project. Add documentation and signals to ProjectTreeModel. --- dgp/core/controllers/project_controllers.py | 6 +- dgp/core/controllers/project_treemodel.py | 51 +++++++++++-- dgp/gui/main.py | 82 ++++----------------- dgp/gui/utils.py | 4 + dgp/gui/views/ProjectTreeView.py | 23 +++++- tests/test_gui_main.py | 7 +- 6 files changed, 89 insertions(+), 84 deletions(-) diff --git a/dgp/core/controllers/project_controllers.py b/dgp/core/controllers/project_controllers.py index fc5d856..044def5 100644 --- a/dgp/core/controllers/project_controllers.py +++ b/dgp/core/controllers/project_controllers.py @@ -164,6 +164,8 @@ def remove_child(self, uid: Union[OID, str], confirm: bool = True): "Are you sure you want to delete {!s}" .format(child.get_attr('name'))): return + if isinstance(child, IFlightController) and self.model() is not None: + self.model().close_flight(child) self.project.remove_child(child.uid) self._child_map[type(child.datamodel)].removeRow(child.row()) self.update() @@ -183,7 +185,7 @@ def set_active_child(self, child: IFlightController, emit: bool = True): ctrl.setBackground(BASE_COLOR) child.setBackground(ACTIVE_COLOR) if emit and self.model() is not None: # pragma: no cover - self.model().tabOpenRequested.emit(self, child) + self.model().active_changed(child) else: raise ValueError("Child of type {0!s} cannot be set to active.".format(type(child))) @@ -225,7 +227,7 @@ def update(self): # pragma: no cover data has been added/removed/modified in the project.""" self.setText(self._project.name) if self.model() is not None: - self.model().project_changed.emit() + self.model().projectMutated.emit() def _post_load(self, datafile: DataFile, dataset: IDataSetController, data: DataFrame) -> None: # pragma: no cover diff --git a/dgp/core/controllers/project_treemodel.py b/dgp/core/controllers/project_treemodel.py index edbea0c..b02caee 100644 --- a/dgp/core/controllers/project_treemodel.py +++ b/dgp/core/controllers/project_treemodel.py @@ -4,8 +4,9 @@ from PyQt5.QtCore import QObject, QModelIndex, pyqtSignal, pyqtSlot, QSortFilterProxyModel, Qt from PyQt5.QtGui import QStandardItemModel -from dgp.core.controllers.controller_interfaces import IFlightController, IAirborneController +from dgp.core.controllers.controller_interfaces import IFlightController from dgp.core.controllers.project_controllers import AirborneProjectController +from dgp.gui.utils import ProgressEvent __all__ = ['ProjectTreeModel'] @@ -15,23 +16,59 @@ class ProjectTreeModel(QStandardItemModel): events and defines signals for domain specific actions. All signals/events should be connected via the model vs the View itself. + + Parameters + ---------- + project : AirborneProjectController + parent : QObject, optional + + Attributes + ---------- + projectMutated : pyqtSignal[] + Signal emitted to notify application that project data has changed. + tabOpenRequested : pyqtSignal[IFlightController] + Signal emitted to request a tab be opened for the supplied Flight + tabCloseRequested : pyqtSignal(IFlightController) + Signal notifying application that tab for given flight should be closed + This is called for example when a Flight is deleted to ensure any open + tabs referencing it are also deleted. + progressNotificationRequested : pyqtSignal[ProgressEvent] + Signal emitted to request a QProgressDialog from the main window. + ProgressEvent is passed defining the parameters for the progress bar + progressUpdateRequested : pyqtSignal[ProgressEvent] + Signal emitted to update an active QProgressDialog + ProgressEvent must reference an event already emitted by + progressNotificationRequested + """ - flight_changed = pyqtSignal(IFlightController) - # Fired on any project mutation - can be used to autosave - project_changed = pyqtSignal() + projectMutated = pyqtSignal() tabOpenRequested = pyqtSignal(IFlightController) tabCloseRequested = pyqtSignal(IFlightController) + progressNotificationRequested = pyqtSignal(ProgressEvent) + progressUpdateRequested = pyqtSignal(ProgressEvent) def __init__(self, project: AirborneProjectController, parent: Optional[QObject]=None): super().__init__(parent) self.appendRow(project) - def active_changed(self): - pass + def active_changed(self, flight: IFlightController): + self.tabOpenRequested.emit(flight) def close_flight(self, flight: IFlightController): self.tabCloseRequested.emit(flight) + def notify_tab_changed(self, flight: IFlightController): + flight.get_parent().set_active_child(flight, emit=False) + + def item_selected(self, index: QModelIndex): + pass + + def item_activated(self, index: QModelIndex): + item = self.itemFromIndex(index) + if isinstance(item, IFlightController): + item.get_parent().set_active_child(item, emit=False) + self.active_changed(item) + @pyqtSlot(QModelIndex, name='on_click') def on_click(self, index: QModelIndex): # pragma: no cover pass @@ -41,7 +78,7 @@ def on_double_click(self, index: QModelIndex): item = self.itemFromIndex(index) if isinstance(item, IFlightController): item.get_parent().set_active_child(item, emit=False) - self.tabOpenRequested.emit(item.get_parent(), item) + self.active_changed(item) # Experiment diff --git a/dgp/gui/main.py b/dgp/gui/main.py index 8f4dacc..a67f366 100644 --- a/dgp/gui/main.py +++ b/dgp/gui/main.py @@ -25,27 +25,9 @@ from dgp.gui.ui.main_window import Ui_MainWindow -def autosave(method): - """Decorator to call save_project for functions that alter project state.""" - def enclosed(self, *args, **kwargs): - if kwargs: - result = method(self, *args, **kwargs) - elif len(args) > 1: - result = method(self, *args) - else: - result = method(self) - self.save_project() - return result - return enclosed - - class MainWindow(QMainWindow, Ui_MainWindow): """An instance of the Main Program Window""" - # Define signals to allow updating of loading progress - status = pyqtSignal(str) # type: pyqtBoundSignal - progress = pyqtSignal(int) # type: pyqtBoundSignal - def __init__(self, project: AirborneProjectController, *args): super().__init__(*args) @@ -67,6 +49,8 @@ def __init__(self, project: AirborneProjectController, *args): # Setup Project self.project = project self.project.set_parent_widget(self) + + # Instantiate the Project Model and display in the ProjectTreeView self.project_model = ProjectTreeModel(self.project) self.project_tree.setModel(self.project_model) self.project_tree.expandAll() @@ -74,6 +58,7 @@ def __init__(self, project: AirborneProjectController, *args): # Support for multiple projects self.projects = [project] self.project_model.tabOpenRequested.connect(self._tab_open_requested) + self.project_model.tabCloseRequested.connect(self._flight_close_requested) # Initialize Variables self.import_base_path = pathlib.Path('~').expanduser().joinpath( @@ -87,12 +72,12 @@ def __init__(self, project: AirborneProjectController, *args): self._mutated = False - def _init_slots(self): + def _init_slots(self): # pragma: no cover """Initialize PyQt Signals/Slots for UI Buttons and Menus""" # Event Signals # # self.project_model.flight_changed.connect(self._flight_changed) - self.project_model.project_changed.connect(self._project_mutated) + self.project_model.projectMutated.connect(self._project_mutated) # File Menu Actions # self.action_exit.triggered.connect(self.close) @@ -118,26 +103,12 @@ def _init_slots(self): # Tab Browser Actions # self.flight_tabs.tabCloseRequested.connect(self._tab_close_requested) - self.flight_tabs.currentChanged.connect(self._tab_changed) + self.flight_tabs.currentChanged.connect(self._tab_index_changed) # Console Window Actions # self.combo_console_verbosity.currentIndexChanged[str].connect( self.set_logging_level) - @property - def current_flight(self): - """Returns the active flight based on which Flight Tab is in focus.""" - if self.flight_tabs.count() > 0: - return self.flight_tabs.currentWidget().flight - return None - - @property - def current_tab(self) -> Union[FlightTab, None]: - """Get the active FlightTab (returns None if no Tabs are open)""" - if self.flight_tabs.count() > 0: - return self.flight_tabs.currentWidget() - return None - def load(self): """Called from splash screen to initialize and load main window. This may be safely deprecated as we currently do not perform any long @@ -146,12 +117,6 @@ def load(self): self.setWindowState(Qt.WindowMaximized) self.save_project() self.show() - try: - self.progress.disconnect() - self.status.disconnect() - except TypeError: - # This can be safely ignored (no slots were connected) - pass def closeEvent(self, *args, **kwargs): self.log.info("Saving project and closing.") @@ -179,7 +144,7 @@ def show_status(self, text, level): self.statusBar().showMessage(text, self._default_status_timeout) @pyqtSlot(IFlightController, name='_tab_open_requested') - def _tab_open_requested(self, flight): + def _tab_open_requested_flt(self, flight): """pyqtSlot(:class:`IFlightController`) Open a :class:`FlightTab` if one does not exist, else set the @@ -194,8 +159,8 @@ def _tab_open_requested(self, flight): index = self.flight_tabs.addTab(tab, flight.get_attr('name')) self.flight_tabs.setCurrentIndex(index) - @pyqtSlot(IFlightController, name='_tab_close_requested') - def _tab_close_requested(self, flight): + @pyqtSlot(IFlightController, name='_flight_close_requested') + def _flight_close_requested(self, flight): """pyqtSlot(:class:`IFlightController`) Close/dispose of the tab for the supplied flight if it exists, else @@ -224,40 +189,21 @@ def _tab_close_requested(self, index): del self._open_tabs[tab.uid] self.flight_tabs.removeTab(index) - - # @pyqtSlot(FlightController, name='_flight_changed') - # def _flight_changed(self, flight: FlightController): - # if flight.uid in self._open_tabs: - # self.flight_tabs.setCurrentWidget(self._open_tabs[flight.uid]) - # else: - # flt_tab = FlightTab(flight) - # self._open_tabs[flight.uid] = flt_tab - # idx = self.flight_tabs.addTab(flt_tab, flight.get_attr('name')) - # self.flight_tabs.setCurrentIndex(idx) - @pyqtSlot(name='_project_mutated') def _project_mutated(self): print("Project mutated") self._mutated = True self.setWindowModified(True) - @pyqtSlot(int, name='_tab_changed') - def _tab_changed(self, index: int): + @pyqtSlot(int, name='_tab_index_changed') + def _tab_index_changed(self, index: int): self.log.debug("Tab index changed to %d", index) current = self.flight_tabs.currentWidget() if current is not None: - fc = current.flight # type: FlightController - self.project.set_active_child(fc, emit=False) + self.project_model.notify_tab_changed(current.flight) else: self.log.debug("No flight tab open") - @pyqtSlot(int, name='_tab_closed') - def _tab_closed(self, index: int): - self.log.debug("Tab close requested for tab: {}".format(index)) - tab = self.flight_tabs.widget(index) # type: FlightTab - del self._open_tabs[tab.uid] - self.flight_tabs.removeTab(index) - def show_progress_dialog(self, title, start=0, stop=1, label=None, cancel="Cancel", modal=False, flags=None) -> QProgressDialog: @@ -291,14 +237,12 @@ def save_project(self) -> None: if self.project is None: return if self.project.save(): - # self.setWindowTitle(self.title + ' - {} [*]' - # .format(self.project.name)) self.setWindowModified(False) self.log.info("Project saved.") else: self.log.info("Error saving project.") - # Project dialog functions ################################################ + # Project create/open dialog functions ################################### def new_project_dialog(self) -> QMainWindow: new_window = True diff --git a/dgp/gui/utils.py b/dgp/gui/utils.py index 7870e30..090a134 100644 --- a/dgp/gui/utils.py +++ b/dgp/gui/utils.py @@ -40,6 +40,10 @@ def emit(self, record: logging.LogRecord): self._dest(entry) +class ProgressEvent: + pass + + def get_project_file(path: Path) -> Union[Path, None]: """ Attempt to retrieve a project file (*.d2p) from the given dir path, diff --git a/dgp/gui/views/ProjectTreeView.py b/dgp/gui/views/ProjectTreeView.py index 877d574..3728f80 100644 --- a/dgp/gui/views/ProjectTreeView.py +++ b/dgp/gui/views/ProjectTreeView.py @@ -11,6 +11,15 @@ class ProjectTreeView(QTreeView): + """ProjectTreeView is a customized QTreeView use to display and interact + with the hierarchy of a Gravity project(s) in the User Interface. + + This class is instantiated as a Promoted Widget within a Qt .ui form + created wit Qt Designer. + Because of this, the constructor does not accept a model instance, and the + model should be instead set with the :func:`setModel` method. + + """ def __init__(self, parent: Optional[QObject]=None): super().__init__(parent=parent) self.setMinimumSize(QtCore.QSize(0, 300)) @@ -45,21 +54,28 @@ def __init__(self, parent: Optional[QObject]=None): @staticmethod def _clear_signal(signal: pyqtBoundSignal): + """Utility method to clear all connections from a bound signal""" while True: try: signal.disconnect() except TypeError: break + def model(self) -> ProjectTreeModel: + return super().model() + def setModel(self, model: ProjectTreeModel): """Set the View Model and connect signals to its slots""" self._clear_signal(self.clicked) self._clear_signal(self.doubleClicked) - super().setModel(model) - self.clicked.connect(self.model().on_click) + + self.clicked.connect(self._on_click) self.doubleClicked.connect(self._on_double_click) - self.doubleClicked.connect(self.model().on_double_click) + + @pyqtSlot(QModelIndex, name='_on_click') + def _on_click(self, index: QModelIndex): + self.model().item_selected(index) @pyqtSlot(QModelIndex, name='_on_double_click') def _on_double_click(self, index: QModelIndex): @@ -72,6 +88,7 @@ def _on_double_click(self, index: QModelIndex): self.setExpanded(index, True) else: self.setExpanded(index, not self.isExpanded(index)) + self.model().item_activated(index) def _build_menu(self, menu: QMenu, bindings: List[Tuple[str, Tuple[Any]]]): self._action_refs.clear() diff --git a/tests/test_gui_main.py b/tests/test_gui_main.py index 76b9ddd..114c666 100644 --- a/tests/test_gui_main.py +++ b/tests/test_gui_main.py @@ -13,7 +13,7 @@ def pctrl(project): return AirborneProjectController(project) -def test_MainWindow_init(project): +def test_MainWindow_load(project): prj_ctrl = AirborneProjectController(project) window = MainWindow(prj_ctrl) @@ -21,7 +21,8 @@ def test_MainWindow_init(project): assert not window.isVisible() assert prj_ctrl in window.projects + window.load() + assert window.isVisible() + assert not window.isWindowModified() -def test_MainWindow_register_project(project): - prj_ctrl = AirborneProjectController(project) From c9174b0f49f574a740652cce518a4b2644f09600 Mon Sep 17 00:00:00 2001 From: Zachery Brady Date: Tue, 24 Jul 2018 11:03:42 -0600 Subject: [PATCH 147/236] ENH: Add multiple project support. MainWindow Test Coverage Added support for opening multiple projects within a single window. MainWindow now utilizes the ProjectTreeModel to dispatch project actions to the currently active project. TODO: Enable setting of active project, and display the project name in Flight/Data dialogs. Add test coverage for MainWindow and ProjectTreeModel. Refactor Workspace/FlightTab to WorkspaceTab - working towards generalizing the base objects for future Marine project implementation. --- dgp/core/controllers/project_treemodel.py | 36 ++-- dgp/gui/dialogs/create_project_dialog.py | 9 +- dgp/gui/main.py | 216 +++++++++++----------- dgp/gui/ui/main_window.ui | 2 +- dgp/gui/workspace.py | 37 ++-- tests/conftest.py | 60 ++++-- tests/test_gui_main.py | 140 +++++++++++++- tests/test_project_treemodel.py | 52 ++++-- 8 files changed, 366 insertions(+), 186 deletions(-) diff --git a/dgp/core/controllers/project_treemodel.py b/dgp/core/controllers/project_treemodel.py index b02caee..4b7cd7d 100644 --- a/dgp/core/controllers/project_treemodel.py +++ b/dgp/core/controllers/project_treemodel.py @@ -3,8 +3,10 @@ from PyQt5.QtCore import QObject, QModelIndex, pyqtSignal, pyqtSlot, QSortFilterProxyModel, Qt from PyQt5.QtGui import QStandardItemModel +from PyQt5.QtWidgets import QWidget -from dgp.core.controllers.controller_interfaces import IFlightController +from dgp.core.oid import OID +from dgp.core.controllers.controller_interfaces import IFlightController, IAirborneController from dgp.core.controllers.project_controllers import AirborneProjectController from dgp.gui.utils import ProgressEvent @@ -42,20 +44,28 @@ class ProjectTreeModel(QStandardItemModel): """ projectMutated = pyqtSignal() - tabOpenRequested = pyqtSignal(IFlightController) - tabCloseRequested = pyqtSignal(IFlightController) + tabOpenRequested = pyqtSignal(OID, object, str) + tabCloseRequested = pyqtSignal(OID) progressNotificationRequested = pyqtSignal(ProgressEvent) progressUpdateRequested = pyqtSignal(ProgressEvent) def __init__(self, project: AirborneProjectController, parent: Optional[QObject]=None): super().__init__(parent) self.appendRow(project) + self._active = project + + @property + def active_project(self) -> IAirborneController: + return self._active def active_changed(self, flight: IFlightController): - self.tabOpenRequested.emit(flight) + self.tabOpenRequested.emit(flight.uid, flight, flight.get_attr('name')) + + def add_project(self, project: IAirborneController): + self.appendRow(project) def close_flight(self, flight: IFlightController): - self.tabCloseRequested.emit(flight) + self.tabCloseRequested.emit(flight.uid) def notify_tab_changed(self, flight: IFlightController): flight.get_parent().set_active_child(flight, emit=False) @@ -68,17 +78,13 @@ def item_activated(self, index: QModelIndex): if isinstance(item, IFlightController): item.get_parent().set_active_child(item, emit=False) self.active_changed(item) + elif isinstance(item, IAirborneController): + self._active = item - @pyqtSlot(QModelIndex, name='on_click') - def on_click(self, index: QModelIndex): # pragma: no cover - pass - - @pyqtSlot(QModelIndex, name='on_double_click') - def on_double_click(self, index: QModelIndex): - item = self.itemFromIndex(index) - if isinstance(item, IFlightController): - item.get_parent().set_active_child(item, emit=False) - self.active_changed(item) + def save_projects(self): + for i in range(self.rowCount()): + prj: IAirborneController = self.item(i, 0) + prj.save() # Experiment diff --git a/dgp/gui/dialogs/create_project_dialog.py b/dgp/gui/dialogs/create_project_dialog.py index b35d85b..be95217 100644 --- a/dgp/gui/dialogs/create_project_dialog.py +++ b/dgp/gui/dialogs/create_project_dialog.py @@ -3,7 +3,7 @@ from pathlib import Path from typing import List -from PyQt5.QtCore import Qt, QRegExp +from PyQt5.QtCore import Qt, QRegExp, pyqtSignal from PyQt5.QtGui import QIcon, QRegExpValidator from PyQt5.QtWidgets import QDialog, QListWidgetItem, QFileDialog, QFormLayout @@ -15,6 +15,8 @@ class CreateProjectDialog(QDialog, Ui_CreateProjectDialog, FormValidator): + sigProjectCreated = pyqtSignal(AirborneProject, bool) + def __init__(self, parent=None): super().__init__(parent=parent) self.setupUi(self) @@ -67,6 +69,7 @@ def accept(self): path.mkdir(parents=True) self._project = AirborneProject(name=name, path=path, description=self.qpte_notes.toPlainText()) + self.sigProjectCreated.emit(self._project, False) else: # pragma: no cover self.ql_validation_err.setText("Invalid Project Type - Not Implemented") return @@ -79,6 +82,10 @@ def select_dir(self): # pragma: no cover if path: self.prj_dir.setText(path) + def show(self): + self.setModal(True) + super().show() + @property def project(self): return self._project diff --git a/dgp/gui/main.py b/dgp/gui/main.py index a67f366..f5f9237 100644 --- a/dgp/gui/main.py +++ b/dgp/gui/main.py @@ -1,27 +1,24 @@ # -*- coding: utf-8 -*- -import os import pathlib import logging -from typing import Union import PyQt5.QtWidgets as QtWidgets from PyQt5.QtCore import Qt, pyqtSlot from PyQt5.QtGui import QColor -from PyQt5.QtCore import pyqtSignal, pyqtBoundSignal -from PyQt5.QtWidgets import QMainWindow, QProgressDialog, QFileDialog, QWidget +from PyQt5.QtWidgets import QMainWindow, QProgressDialog, QFileDialog, QWidget, QDialog import dgp.core.types.enumerations as enums -from dgp.core.controllers.controller_interfaces import IFlightController, IAirborneController +from dgp.core.oid import OID +from dgp.core.controllers.controller_interfaces import IAirborneController, IBaseController from dgp.core.controllers.project_controllers import AirborneProjectController -from dgp.core.controllers.flight_controller import FlightController from dgp.core.controllers.project_treemodel import ProjectTreeModel from dgp.core.models.project import AirborneProject from dgp.gui.utils import (ConsoleHandler, LOG_FORMAT, LOG_LEVEL_MAP, LOG_COLOR_MAP, get_project_file) from dgp.gui.dialogs.create_project_dialog import CreateProjectDialog -from dgp.gui.workspace import FlightTab +from dgp.gui.workspace import WorkspaceTab from dgp.gui.ui.main_window import Ui_MainWindow @@ -47,18 +44,16 @@ def __init__(self, project: AirborneProjectController, *args): self.log.setLevel(logging.DEBUG) # Setup Project - self.project = project - self.project.set_parent_widget(self) + project.set_parent_widget(self) # Instantiate the Project Model and display in the ProjectTreeView - self.project_model = ProjectTreeModel(self.project) - self.project_tree.setModel(self.project_model) + self.model = ProjectTreeModel(project) + self.project_tree.setModel(self.model) self.project_tree.expandAll() # Support for multiple projects - self.projects = [project] - self.project_model.tabOpenRequested.connect(self._tab_open_requested) - self.project_model.tabCloseRequested.connect(self._flight_close_requested) + self.model.tabOpenRequested.connect(self._tab_open_requested) + self.model.tabCloseRequested.connect(self._tab_close_requested) # Initialize Variables self.import_base_path = pathlib.Path('~').expanduser().joinpath( @@ -66,44 +61,42 @@ def __init__(self, project: AirborneProjectController, *args): self._default_status_timeout = 5000 # Status Msg timeout in milli-sec # Issue #50 Flight Tabs - # flight_tabs is a custom Qt Widget (dgp.gui.workspace) promoted within the .ui file - self.flight_tabs: QtWidgets.QTabWidget + # workspace is a custom Qt Widget (dgp.gui.workspace) promoted within the .ui file + self.workspace: QtWidgets.QTabWidget self._open_tabs = {} # Track opened tabs by {uid: tab_widget, ...} self._mutated = False + self._init_slots() + def _init_slots(self): # pragma: no cover """Initialize PyQt Signals/Slots for UI Buttons and Menus""" # Event Signals # - # self.project_model.flight_changed.connect(self._flight_changed) - self.project_model.projectMutated.connect(self._project_mutated) + # self.model.flight_changed.connect(self._flight_changed) + self.model.projectMutated.connect(self._project_mutated) # File Menu Actions # self.action_exit.triggered.connect(self.close) self.action_file_new.triggered.connect(self.new_project_dialog) self.action_file_open.triggered.connect(self.open_project_dialog) - self.action_file_save.triggered.connect(self.save_project) + self.action_file_save.triggered.connect(self.save_projects) # Project Menu Actions # - self.action_import_gps.triggered.connect( - lambda: self.project.load_file_dlg(enums.DataTypes.TRAJECTORY, )) - self.action_import_grav.triggered.connect( - lambda: self.project.load_file_dlg(enums.DataTypes.GRAVITY, )) - self.action_add_flight.triggered.connect(self.project.add_flight) - self.action_add_meter.triggered.connect(self.project.add_gravimeter) + self.action_import_gps.triggered.connect(self._import_gps) + self.action_import_grav.triggered.connect(self._import_gravity) + self.action_add_flight.triggered.connect(self._add_flight) + self.action_add_meter.triggered.connect(self._add_gravimeter) # Project Control Buttons # - self.prj_add_flight.clicked.connect(self.project.add_flight) - self.prj_add_meter.clicked.connect(self.project.add_gravimeter) - self.prj_import_gps.clicked.connect( - lambda: self.project.load_file_dlg(enums.DataTypes.TRAJECTORY, )) - self.prj_import_grav.clicked.connect( - lambda: self.project.load_file_dlg(enums.DataTypes.GRAVITY, )) + self.prj_add_flight.clicked.connect(self._add_flight) + self.prj_add_meter.clicked.connect(self._add_gravimeter) + self.prj_import_gps.clicked.connect(self._import_gps) + self.prj_import_grav.clicked.connect(self._import_gravity) # Tab Browser Actions # - self.flight_tabs.tabCloseRequested.connect(self._tab_close_requested) - self.flight_tabs.currentChanged.connect(self._tab_index_changed) + self.workspace.tabCloseRequested.connect(self._tab_close_requested_local) + self.workspace.currentChanged.connect(self._tab_index_changed) # Console Window Actions # self.combo_console_verbosity.currentIndexChanged[str].connect( @@ -113,14 +106,13 @@ def load(self): """Called from splash screen to initialize and load main window. This may be safely deprecated as we currently do not perform any long running operations on initial load as we once did.""" - self._init_slots() self.setWindowState(Qt.WindowMaximized) - self.save_project() + self.save_projects() self.show() def closeEvent(self, *args, **kwargs): self.log.info("Saving project and closing.") - self.save_project() + self.save_projects() super().closeEvent(*args, **kwargs) def set_logging_level(self, name: str): @@ -143,40 +135,33 @@ def show_status(self, text, level): if level.lower() == 'error' or level.lower() == 'info': self.statusBar().showMessage(text, self._default_status_timeout) - @pyqtSlot(IFlightController, name='_tab_open_requested') - def _tab_open_requested_flt(self, flight): - """pyqtSlot(:class:`IFlightController`) - - Open a :class:`FlightTab` if one does not exist, else set the - FlightTab for the given :class:`IFlightController` to active - - """ - if flight.uid in self._open_tabs: - self.flight_tabs.setCurrentWidget(self._open_tabs[flight.uid]) + def _tab_open_requested(self, uid: OID, controller: IBaseController, label: str): + self.log.debug("Tab Open Requested") + if uid in self._open_tabs: + self.workspace.setCurrentWidget(self._open_tabs[uid]) else: - tab = FlightTab(flight) - self._open_tabs[flight.uid] = tab - index = self.flight_tabs.addTab(tab, flight.get_attr('name')) - self.flight_tabs.setCurrentIndex(index) + self.log.debug("Creating new tab and adding to workspace") + ntab = WorkspaceTab(controller) + self._open_tabs[uid] = ntab + self.workspace.addTab(ntab, label) + self.workspace.setCurrentWidget(ntab) - @pyqtSlot(IFlightController, name='_flight_close_requested') - def _flight_close_requested(self, flight): - """pyqtSlot(:class:`IFlightController`) + @pyqtSlot(OID, name='_flight_close_requested') + def _tab_close_requested(self, uid: OID): + """pyqtSlot(:class:`OID`) Close/dispose of the tab for the supplied flight if it exists, else do nothing. """ - if flight.uid in self._open_tabs: - self.log.debug(f'Tab close requested for flight ' - f'{flight.get_attr("name")}') - tab = self._open_tabs[flight.uid] - index = self.flight_tabs.indexOf(tab) - self.flight_tabs.removeTab(index) - del self._open_tabs[flight.uid] - - @pyqtSlot(int, name='_tab_close_requested') - def _tab_close_requested(self, index): + if uid in self._open_tabs: + tab = self._open_tabs[uid] + index = self.workspace.indexOf(tab) + self.workspace.removeTab(index) + del self._open_tabs[uid] + + @pyqtSlot(int, name='_tab_close_requested_local') + def _tab_close_requested_local(self, index): """pyqtSlot(int) Close/dispose of tab specified by int index. @@ -185,22 +170,21 @@ def _tab_close_requested(self, index): """ self.log.debug(f'Tab close requested for tab at index {index}') - tab = self.flight_tabs.widget(index) # type: FlightTab + tab = self.workspace.widget(index) # type: WorkspaceTab del self._open_tabs[tab.uid] - self.flight_tabs.removeTab(index) + self.workspace.removeTab(index) @pyqtSlot(name='_project_mutated') def _project_mutated(self): - print("Project mutated") self._mutated = True self.setWindowModified(True) @pyqtSlot(int, name='_tab_index_changed') def _tab_index_changed(self, index: int): self.log.debug("Tab index changed to %d", index) - current = self.flight_tabs.currentWidget() + current: WorkspaceTab = self.workspace.currentWidget() if current is not None: - self.project_model.notify_tab_changed(current.flight) + self.model.notify_tab_changed(current.root) else: self.log.debug("No flight tab open") @@ -233,46 +217,66 @@ def show_progress_status(self, start, stop, label=None) -> QtWidgets.QProgressBa sb.addWidget(progress) return progress - def save_project(self) -> None: - if self.project is None: - return - if self.project.save(): - self.setWindowModified(False) - self.log.info("Project saved.") - else: - self.log.info("Error saving project.") + def save_projects(self) -> None: + self.model.save_projects() + self.setWindowModified(False) + self.log.info("Project saved.") # Project create/open dialog functions ################################### - def new_project_dialog(self) -> QMainWindow: - new_window = True - dialog = CreateProjectDialog() - if dialog.exec_(): - self.log.info("Creating new project") - project = dialog.project + def new_project_dialog(self) -> QDialog: + def _add_project(prj: AirborneProject, new_window: bool): + self.log.info("Creating new project.") + control = AirborneProjectController(prj) if new_window: - self.log.debug("Opening project in new window") - return MainWindow(project) + return MainWindow(control) else: - self.project = project - self.project.save() - self.update_project() - - # TODO: This will eventually require a dialog to allow selection of project - # type, or a metadata file in the project directory specifying type info - def open_project_dialog(self) -> None: - path = QFileDialog.getExistingDirectory(self, "Open Project Directory", - os.path.abspath('..')) - if not path: - return - - prj_file = get_project_file(path) - if prj_file is None: - self.log.warning("No project file's found in directory: {}" - .format(path)) - return - self.save_project() - with open(prj_file, 'r') as fd: - self.project = AirborneProject.from_json(fd.read()) - self.update_project() - return + self.model.add_project(control) + self.save_projects() + + dialog = CreateProjectDialog(parent=self) + dialog.sigProjectCreated.connect(_add_project) + dialog.show() + return dialog + + def open_project_dialog(self, checked: bool = False, path=None) -> QFileDialog: + # TODO: Enable open in new window option + def _project_selected(directory): + prj_file = get_project_file(pathlib.Path(directory[0])) + if prj_file is None: + self.log.warning("No valid DGP project file found in directory") + return + with prj_file.open('r') as fd: + project = AirborneProject.from_json(fd.read()) + control = AirborneProjectController(project) + self.model.add_project(control) + self.save_projects() + + if path is not None: + _project_selected([path]) + else: # pragma: no cover + dialog = QFileDialog(self, "Open Project", str(self.import_base_path)) + dialog.setFileMode(QFileDialog.DirectoryOnly) + dialog.setViewMode(QFileDialog.List) + dialog.accepted.connect(lambda: _project_selected(dialog.selectedFiles())) + dialog.setModal(True) + dialog.show() + + return dialog + + # Active Project Action Slots + @property + def project_(self) -> IAirborneController: + return self.model.active_project + + def _import_gps(self): # pragma: no cover + self.project_.load_file_dlg(enums.DataTypes.TRAJECTORY, ) + + def _import_gravity(self): # pragma: no cover + self.project_.load_file_dlg(enums.DataTypes.GRAVITY, ) + + def _add_gravimeter(self): # pragma: no cover + self.project_.add_gravimeter() + + def _add_flight(self): # pragma: no cover + self.project_.add_flight() diff --git a/dgp/gui/ui/main_window.ui b/dgp/gui/ui/main_window.ui index 7b88fc0..f136a28 100644 --- a/dgp/gui/ui/main_window.ui +++ b/dgp/gui/ui/main_window.ui @@ -41,7 +41,7 @@ 0 - + diff --git a/dgp/gui/workspace.py b/dgp/gui/workspace.py index 7915d6a..fa7cf57 100644 --- a/dgp/gui/workspace.py +++ b/dgp/gui/workspace.py @@ -8,50 +8,49 @@ import PyQt5.QtWidgets as QtWidgets import PyQt5.QtGui as QtGui +from dgp.core.controllers.controller_interfaces import IBaseController from dgp.core.controllers.flight_controller import FlightController from dgp.core.oid import OID from .workspaces import * -class FlightTab(QWidget): +class WorkspaceTab(QWidget): """Top Level Tab created for each Flight object open in the workspace""" def __init__(self, flight: FlightController, parent=None, flags=0, **kwargs): super().__init__(parent=parent, flags=Qt.Widget) self.log = logging.getLogger(__name__) - self._flight = flight + self._root: IBaseController = flight self._layout = QVBoxLayout(self) - # _workspace is the inner QTabWidget containing the WorkspaceWidgets - self._workspace = QTabWidget() - self._workspace.setTabPosition(QTabWidget.West) - self._layout.addWidget(self._workspace) + self._setup_tasktabs() + def _setup_tasktabs(self): # Define Sub-Tabs within Flight space e.g. Plot, Transform, Maps - self._plot_tab = PlotTab(label="Plot", flight=flight) + self._tasktabs = QTabWidget() + self._tasktabs.setTabPosition(QTabWidget.West) + self._layout.addWidget(self._tasktabs) - self._workspace.addTab(self._plot_tab, "Plot") + self._plot_tab = PlotTab(label="Plot", flight=self._root) + self._tasktabs.addTab(self._plot_tab, "Plot") - self._transform_tab = TransformTab("Transforms", flight) - self._workspace.addTab(self._transform_tab, "Transforms") + self._transform_tab = TransformTab("Transforms", self._root) + self._tasktabs.addTab(self._transform_tab, "Transforms") - self._line_proc_tab = LineProcessTab("Line Processing", flight) - self._workspace.addTab(self._line_proc_tab, "Line Processing") + # self._line_proc_tab = LineProcessTab("Line Processing", flight) + # self._tasktabs.addTab(self._line_proc_tab, "Line Processing") - self._workspace.setCurrentIndex(0) + self._tasktabs.setCurrentIndex(0) self._plot_tab.update() - def subtab_widget(self): - return self._workspace.currentWidget().widget() - @property def uid(self) -> OID: """Return the underlying Flight's UID""" - return self._flight.uid + return self._root.uid @property - def flight(self) -> FlightController: - return self._flight + def root(self) -> IBaseController: + return self._root @property def plot(self): diff --git a/tests/conftest.py b/tests/conftest.py index 9016460..06fdffb 100644 --- a/tests/conftest.py +++ b/tests/conftest.py @@ -5,6 +5,7 @@ import pandas as pd import pytest +from dgp.core.controllers.project_controllers import AirborneProjectController from dgp.core.hdf5_manager import HDF5_NAME from dgp.core.models.data import DataFile from dgp.core.models.dataset import DataSegment, DataSet @@ -24,34 +25,53 @@ def get_ts(offset=0): @pytest.fixture() -def project(tmpdir): +def project_factory(): + def _factory(name, path, flights=2, dataset=True): + base_dir = Path(path) + prj = AirborneProject(name=name, path=base_dir.joinpath(''.join(name.split(' '))), + description=f"Description of {name}") + prj.path.mkdir() + + flt1 = Flight("Flt1", sequence=0, duration=4) + flt2 = Flight("Flt2", sequence=1, duration=6) + + mtr = Gravimeter.from_ini(Path('tests').joinpath('at1m.ini'), name="AT1A-X") + + grav1 = DataFile('gravity', datetime.now(), base_dir.joinpath('gravity1.dat')) + traj1 = DataFile('trajectory', datetime.now(), base_dir.joinpath('gps1.dat')) + seg1 = DataSegment(OID(), get_ts(0), get_ts(1500), 0, "seg1") + seg2 = DataSegment(OID(), get_ts(1501), get_ts(3000), 1, "seg2") + + if dataset: + dataset1 = DataSet(prj.path.joinpath('hdfstore.hdf5'), grav1, traj1, + [seg1, seg2]) + flt1.datasets.append(dataset1) + + prj.add_child(mtr) + prj.add_child(flt1) + prj.add_child(flt2) + return prj + return _factory + + + +@pytest.fixture() +def project(project_factory, tmpdir): """This fixture constructs a project model with a flight, gravimeter, DataSet (and its children - DataFile/DataSegment) for testing the serialization and de-serialization of a fleshed out project. """ - base_dir = Path(tmpdir) - prj = AirborneProject(name="TestProject", path=base_dir.joinpath("prj"), - description="Description of TestProject") - prj.path.mkdir() + return project_factory("TestProject", tmpdir) - flt1 = Flight("Flt1", sequence=0, duration=4) - flt2 = Flight("Flt2", sequence=1, duration=6) - mtr = Gravimeter.from_ini(Path('tests').joinpath('at1m.ini'), name="AT1A-X") - - grav1 = DataFile('gravity', datetime.now(), base_dir.joinpath('gravity1.dat')) - traj1 = DataFile('trajectory', datetime.now(), base_dir.joinpath('gps1.dat')) - seg1 = DataSegment(OID(), get_ts(0), get_ts(1500), 0, "seg1") - seg2 = DataSegment(OID(), get_ts(1501), get_ts(3000), 1, "seg2") +@pytest.fixture() +def prj_ctrl(project): + return AirborneProjectController(project) - dataset1 = DataSet(prj.path.joinpath('hdfstore.hdf5'), grav1, traj1, - [seg1, seg2]) - flt1.datasets.append(dataset1) - prj.add_child(mtr) - prj.add_child(flt1) - prj.add_child(flt2) - return prj +@pytest.fixture +def flt_ctrl(prj_ctrl: AirborneProjectController): + return prj_ctrl.get_child(prj_ctrl.datamodel.flights[0].uid) @pytest.fixture(scope='module') diff --git a/tests/test_gui_main.py b/tests/test_gui_main.py index 114c666..dcd62b9 100644 --- a/tests/test_gui_main.py +++ b/tests/test_gui_main.py @@ -1,28 +1,154 @@ # -*- coding: utf-8 -*- # Test gui/main.py +import logging +from pathlib import Path + import pytest -from PyQt5.QtWidgets import QMainWindow +from PyQt5.QtTest import QSignalSpy +from PyQt5.QtWidgets import QMainWindow, QFileDialog +from dgp.core.models.project import AirborneProject +from dgp.core.controllers.project_treemodel import ProjectTreeModel +from dgp.core.controllers.flight_controller import FlightController from dgp.core.controllers.project_controllers import AirborneProjectController from dgp.gui.main import MainWindow +from dgp.gui.workspace import WorkspaceTab +from dgp.gui.dialogs.create_project_dialog import CreateProjectDialog @pytest.fixture -def pctrl(project): - return AirborneProjectController(project) +def flt_ctrl(prj_ctrl: AirborneProjectController): + return prj_ctrl.get_child(prj_ctrl.datamodel.flights[0].uid) + +@pytest.fixture +def window(prj_ctrl): + return MainWindow(prj_ctrl) -def test_MainWindow_load(project): - prj_ctrl = AirborneProjectController(project) - window = MainWindow(prj_ctrl) +def test_MainWindow_load(window): assert isinstance(window, QMainWindow) assert not window.isVisible() - assert prj_ctrl in window.projects window.load() assert window.isVisible() assert not window.isWindowModified() + window.close() + assert not window.isVisible() + + +def test_MainWindow_tab_open_requested(flt_ctrl: FlightController, + window: MainWindow): + assert isinstance(window.model, ProjectTreeModel) + + tab_open_spy = QSignalSpy(window.model.tabOpenRequested) + assert 0 == len(tab_open_spy) + assert 0 == len(window._open_tabs) + + assert isinstance(flt_ctrl, FlightController) + assert flt_ctrl.uid not in window._open_tabs + + window.model.active_changed(flt_ctrl) + assert 1 == len(tab_open_spy) + assert 1 == len(window._open_tabs) + assert 1 == window.workspace.count() + assert isinstance(window.workspace.currentWidget(), WorkspaceTab) + + window.model.active_changed(flt_ctrl) + assert 2 == len(tab_open_spy) + assert 1 == len(window._open_tabs) + assert 1 == window.workspace.count() + + +def test_MainWindow_tab_close_requested(flt_ctrl: AirborneProjectController, + window: MainWindow): + tab_close_spy = QSignalSpy(window.model.tabCloseRequested) + assert 0 == len(tab_close_spy) + assert 0 == len(window._open_tabs) + assert 0 == window.workspace.count() + + window.model.active_changed(flt_ctrl) + assert 1 == window.workspace.count() + + window.model.close_flight(flt_ctrl) + assert 1 == len(tab_close_spy) + assert flt_ctrl.uid == tab_close_spy[0][0] + assert flt_ctrl.uid not in window._open_tabs + + window.model.active_changed(flt_ctrl) + assert 1 == window.workspace.count() + assert flt_ctrl.uid in window._open_tabs + window.workspace.tabCloseRequested.emit(0) + assert 0 == window.workspace.count() + + assert 1 == len(tab_close_spy) + window.model.close_flight(flt_ctrl) + assert 2 == len(tab_close_spy) + + +def test_MainWindow_project_mutated(window: MainWindow): + assert not window.isWindowModified() + window.model.projectMutated.emit() + assert window.isWindowModified() + window.save_projects() + assert not window.isWindowModified() + + +def test_MainWindow_set_logging_level(window: MainWindow): + # Test UI combo-box widget to change/set logging level + assert logging.DEBUG == window.log.level + + index_level_map = {0: logging.DEBUG, + 1: logging.INFO, + 2: logging.WARNING, + 3: logging.ERROR, + 4: logging.CRITICAL} + + for index, level in index_level_map.items(): + window.combo_console_verbosity.setCurrentIndex(index) + assert level == window.log.level + + +def test_MainWindow_new_project_dialog(window: MainWindow, tmpdir): + assert 1 == window.model.rowCount() + dest = Path(tmpdir) + dest_str = str(dest.absolute().resolve()) + + dlg: CreateProjectDialog = window.new_project_dialog() + projectCreated_spy = QSignalSpy(dlg.sigProjectCreated) + dlg.prj_name.setText("TestNewProject") + dlg.prj_dir.setText(dest_str) + dlg.accept() + + assert 1 == len(projectCreated_spy) + assert 2 == window.model.rowCount() + + prj_dir = dest.joinpath("TestNewProject") + assert prj_dir.exists() + + +def test_MainWindow_open_project_dialog(window: MainWindow, project_factory, tmpdir): + prj2: AirborneProject = project_factory("Proj2", tmpdir, dataset=False) + prj2_ctrl = AirborneProjectController(prj2) + prj2_ctrl.save() + prj2_ctrl.hdf5path.touch(exist_ok=True) + + assert window.project_.path != prj2_ctrl.path + assert 1 == window.model.rowCount() + + window.open_project_dialog(path=prj2.path) + + assert 2 == window.model.rowCount() + + window.open_project_dialog(path=tmpdir) + assert 2 == window.model.rowCount() + + + + + + + diff --git a/tests/test_project_treemodel.py b/tests/test_project_treemodel.py index 14a80fc..aaa3184 100644 --- a/tests/test_project_treemodel.py +++ b/tests/test_project_treemodel.py @@ -1,28 +1,46 @@ # -*- coding: utf-8 -*- -from pathlib import Path +from PyQt5.QtTest import QSignalSpy -from dgp.core.models.flight import Flight -from dgp.core.controllers.project_controllers import AirborneProjectController from dgp.core.models.project import AirborneProject +from dgp.core.controllers.flight_controller import FlightController +from dgp.core.controllers.project_controllers import AirborneProjectController from dgp.core.controllers.project_treemodel import ProjectTreeModel -from .context import APP +def test_ProjectTreeModel_init(project: AirborneProject, + prj_ctrl: AirborneProjectController): + + model = ProjectTreeModel(prj_ctrl) + assert 1 == model.rowCount() + assert prj_ctrl == model.active_project + + +def test_ProjectTreeModel_multiple_projects(project: AirborneProject, + prj_ctrl: AirborneProjectController): + prj_ctrl2 = AirborneProjectController(project) + assert prj_ctrl is not prj_ctrl2 + + model = ProjectTreeModel(prj_ctrl) + assert 1 == model.rowCount() + assert prj_ctrl == model.active_project -def test_project_treemodel(tmpdir): - project = AirborneProject(name="TestProjectTreeModel", path=Path(tmpdir)) - project_ctrl = AirborneProjectController(project) + model.add_project(prj_ctrl2) + assert 2 == model.rowCount() + assert prj_ctrl == model.active_project + model.item_activated(model.index(prj_ctrl2.row(), 0)) + assert prj_ctrl2 == model.active_project - flt1 = Flight("Flt1") - fc1 = project_ctrl.add_child(flt1) - model = ProjectTreeModel(project_ctrl) +def test_ProjectTreeModel_item_activated(prj_ctrl: AirborneProjectController, + flt_ctrl: FlightController): + model = ProjectTreeModel(prj_ctrl) + tabOpen_spy = QSignalSpy(model.tabOpenRequested) - fc1_index = model.index(fc1.row(), 0, parent=model.index(project_ctrl.flights.row(), 0, parent=model.index( - project_ctrl.row(), 0))) - assert not fc1.is_active() - model.on_double_click(fc1_index) - assert fc1.is_active() + fc1_index = model.index(flt_ctrl.row(), 0, + parent=model.index(prj_ctrl.flights.row(), 0, + parent=model.index(prj_ctrl.row(), 0))) + assert not flt_ctrl.is_active() + model.item_activated(fc1_index) + assert flt_ctrl.is_active() + assert 1 == len(tabOpen_spy) - prj_index = model.index(project_ctrl.row(), 0) - assert model.on_double_click(prj_index) is None From 80ed3e0b8bb8ef59a001764351131c36d6814b2b Mon Sep 17 00:00:00 2001 From: Zachery Brady Date: Tue, 24 Jul 2018 11:12:20 -0600 Subject: [PATCH 148/236] CLN: Clean/refactor files in gui/workspaces Delete LineTab and MapTab as they are not currently used - they will be implemented in a later version. Rename BaseTab -> TaskTab and removed over-specific attributes from the base class. Clean unnecesarry/confusing code from workspaces/__init__, the dynamic import was not useful on reflection. --- dgp/gui/workspace.py | 3 +- dgp/gui/workspaces/BaseTab.py | 47 ------------------------------ dgp/gui/workspaces/LineTab.py | 20 ------------- dgp/gui/workspaces/MapTab.py | 7 ----- dgp/gui/workspaces/PlotTab.py | 22 +++++++++----- dgp/gui/workspaces/TaskTab.py | 34 +++++++++++++++++++++ dgp/gui/workspaces/TransformTab.py | 4 +-- dgp/gui/workspaces/__init__.py | 19 ++---------- 8 files changed, 55 insertions(+), 101 deletions(-) delete mode 100644 dgp/gui/workspaces/BaseTab.py delete mode 100644 dgp/gui/workspaces/LineTab.py delete mode 100644 dgp/gui/workspaces/MapTab.py create mode 100644 dgp/gui/workspaces/TaskTab.py diff --git a/dgp/gui/workspace.py b/dgp/gui/workspace.py index fa7cf57..25a37cf 100644 --- a/dgp/gui/workspace.py +++ b/dgp/gui/workspace.py @@ -11,7 +11,8 @@ from dgp.core.controllers.controller_interfaces import IBaseController from dgp.core.controllers.flight_controller import FlightController from dgp.core.oid import OID -from .workspaces import * +from .workspaces import PlotTab +from .workspaces import TransformTab class WorkspaceTab(QWidget): diff --git a/dgp/gui/workspaces/BaseTab.py b/dgp/gui/workspaces/BaseTab.py deleted file mode 100644 index 45489ee..0000000 --- a/dgp/gui/workspaces/BaseTab.py +++ /dev/null @@ -1,47 +0,0 @@ -# coding: utf-8 - -from PyQt5.QtWidgets import QWidget - -from dgp.core.controllers.controller_interfaces import IFlightController -from dgp.lib.etc import gen_uuid - - -class BaseTab(QWidget): - """Base Workspace Tab Widget - Subclass to specialize function""" - def __init__(self, label: str, flight: IFlightController, parent=None, **kwargs): - super().__init__(parent, **kwargs) - self.label = label - self._flight = flight - self._uid = gen_uuid('ww') - self._plot = None - self._model = None - - def widget(self): - return None - - @property - def model(self): - return self._model - - @model.setter - def model(self, value): - self._model = value - - @property - def flight(self) -> IFlightController: - return self._flight - - @property - def plot(self): - return self._plot - - @plot.setter - def plot(self, value): - self._plot = value - - def data_modified(self, action: str, dsrc): - pass - - @property - def uid(self): - return self._uid diff --git a/dgp/gui/workspaces/LineTab.py b/dgp/gui/workspaces/LineTab.py deleted file mode 100644 index 70a1979..0000000 --- a/dgp/gui/workspaces/LineTab.py +++ /dev/null @@ -1,20 +0,0 @@ -# coding: utf-8 - -from PyQt5.QtWidgets import QGridLayout - -from ..plotting.plotters import TransformPlot -from . import BaseTab - - -class LineProcessTab(BaseTab): - """Thoughts: This tab can be created and opened when data is connected to - the Transform tab output node. Or simply when a button is clicked in the - Transform tab interface.""" - _name = "Line Processing" - - def __init__(self, label, flight): - super().__init__(label, flight) - self.setLayout(QGridLayout()) - plot_widget = TransformPlot(rows=2, cols=4, sharex=True, - sharey=True, grid=True) - self.layout().addWidget(plot_widget.widget, 0, 0) diff --git a/dgp/gui/workspaces/MapTab.py b/dgp/gui/workspaces/MapTab.py deleted file mode 100644 index bb0e1f8..0000000 --- a/dgp/gui/workspaces/MapTab.py +++ /dev/null @@ -1,7 +0,0 @@ -# coding: utf-8 - -from . import BaseTab - - -class MapTab(BaseTab): - pass diff --git a/dgp/gui/workspaces/PlotTab.py b/dgp/gui/workspaces/PlotTab.py index b966662..47ff611 100644 --- a/dgp/gui/workspaces/PlotTab.py +++ b/dgp/gui/workspaces/PlotTab.py @@ -11,13 +11,19 @@ from dgp.gui.widgets.channel_select_widget import ChannelSelectWidget from dgp.core.controllers.flight_controller import FlightController from dgp.gui.plotting.plotters import LineUpdate, PqtLineSelectPlot -from . import BaseTab +from .TaskTab import TaskTab -class PlotTab(BaseTab): +class PlotTab(TaskTab): """Sub-tab displayed within Flight tab interface. Displays canvas for - plotting data series.""" - _name = "Line Selection" + plotting data series. + + Parameters + ---------- + label : str + flight : FlightController + + """ def __init__(self, label: str, flight: FlightController, **kwargs): # TODO: It will make more sense to associate a DataSet with the plot vs a Flight @@ -43,10 +49,10 @@ def _setup_ui(self): qhbl_top_buttons.addWidget(self._qpb_channel_toggle, alignment=Qt.AlignLeft) - self._mode_label = QtWidgets.QLabel('') + self._ql_mode = QtWidgets.QLabel('') # top_button_hlayout.addSpacing(20) qhbl_top_buttons.addStretch(2) - qhbl_top_buttons.addWidget(self._mode_label) + qhbl_top_buttons.addWidget(self._ql_mode) qhbl_top_buttons.addStretch(2) # top_button_hlayout.addSpacing(20) self._qpb_toggle_mode = QtWidgets.QPushButton("Toggle Line Selection Mode") @@ -86,9 +92,9 @@ def _clear_plot(self): def _toggle_selection(self, state: bool): self.plot.selection_mode = state if state: - self._mode_label.setText("

Line Selection Active

") + self._ql_mode.setText("

Line Selection Active

") else: - self._mode_label.setText("") + self._ql_mode.setText("") def _on_modified_line(self, update: LineUpdate): start = update.start diff --git a/dgp/gui/workspaces/TaskTab.py b/dgp/gui/workspaces/TaskTab.py new file mode 100644 index 0000000..e9a1dff --- /dev/null +++ b/dgp/gui/workspaces/TaskTab.py @@ -0,0 +1,34 @@ +# -*- coding: utf-8 -*- +import logging + +from PyQt5.QtWidgets import QWidget + +from dgp.core.oid import OID +from dgp.core.controllers.controller_interfaces import IFlightController, IBaseController + + +class TaskTab(QWidget): + """Base Workspace Tab Widget - Subclass to specialize function + + Parameters + ---------- + label : str + root : :class:`IBaseController` + parent + kwargs + + """ + def __init__(self, label: str, root: IBaseController, parent=None, **kwargs): + super().__init__(parent, **kwargs) + self.log = logging.getLogger(__name__) + self.label = label + self._root = root + + @property + def uid(self) -> OID: + return self._root.uid + + @property + def root(self) -> IBaseController: + """Return the root data object/controller associated with this tab.""" + return self._root diff --git a/dgp/gui/workspaces/TransformTab.py b/dgp/gui/workspaces/TransformTab.py index 5a600cf..9e69407 100644 --- a/dgp/gui/workspaces/TransformTab.py +++ b/dgp/gui/workspaces/TransformTab.py @@ -12,7 +12,7 @@ from dgp.core.controllers.flight_controller import FlightController from dgp.lib.transform.transform_graphs import SyncGravity, AirbornePost, TransformGraph from dgp.gui.plotting.plotters import TransformPlot -from . import BaseTab +from . import TaskTab from ..ui.transform_tab_widget import Ui_TransformInterface @@ -233,7 +233,7 @@ def execute_transform(self): self.result.emit() -class TransformTab(BaseTab): +class TransformTab(TaskTab): """Sub-tab displayed within Flight tab interface. Displays interface for selecting Transform chains and plots for displaying the resultant data sets. """ diff --git a/dgp/gui/workspaces/__init__.py b/dgp/gui/workspaces/__init__.py index 6bf03fe..df7aa44 100644 --- a/dgp/gui/workspaces/__init__.py +++ b/dgp/gui/workspaces/__init__.py @@ -1,20 +1,7 @@ -# coding: utf-8 +# -*- coding: utf-8 -*- -from importlib import import_module - -from .BaseTab import BaseTab -from .LineTab import LineProcessTab +from .TaskTab import TaskTab from .PlotTab import PlotTab from .TransformTab import TransformTab -__all__ = ['BaseTab', 'LineProcessTab', 'PlotTab', 'TransformTab'] - -_modules = [] -for name in ['BaseTab', 'LineTab', 'MapTab', 'PlotTab']: - mod = import_module('.%s' % name, __name__) - _modules.append(mod) - -tabs = [] -for mod in _modules: - tab = [cls for cls in mod.__dict__.values() if isinstance(cls, BaseTab)] - tabs.append(tab) +__all__ = ['TaskTab', 'PlotTab', 'TransformTab'] From f9ae741394c516626c7febf7e02e8bf0154a4d88 Mon Sep 17 00:00:00 2001 From: Zachery Brady Date: Tue, 24 Jul 2018 11:24:25 -0600 Subject: [PATCH 149/236] FIX: Case sensitive test assertion on POSIX Test failing due to case sensitive directory matching on Linux/POSIX systems. --- tests/test_gui_main.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/tests/test_gui_main.py b/tests/test_gui_main.py index dcd62b9..98604b7 100644 --- a/tests/test_gui_main.py +++ b/tests/test_gui_main.py @@ -125,7 +125,7 @@ def test_MainWindow_new_project_dialog(window: MainWindow, tmpdir): assert 1 == len(projectCreated_spy) assert 2 == window.model.rowCount() - prj_dir = dest.joinpath("TestNewProject") + prj_dir = dest.joinpath(dlg.project.name) assert prj_dir.exists() From 0a8bb3b3dc3faf3336e6b1fdd01d99752c922737 Mon Sep 17 00:00:00 2001 From: Zachery Brady Date: Tue, 24 Jul 2018 12:30:34 -0600 Subject: [PATCH 150/236] Add check for already opened project. Check if project is already opened in the main window before loading/adding it to the project model. --- dgp/core/controllers/project_treemodel.py | 10 +++++++--- dgp/gui/main.py | 9 ++++++--- tests/test_gui_main.py | 11 +++-------- tests/test_project_treemodel.py | 3 +++ 4 files changed, 19 insertions(+), 14 deletions(-) diff --git a/dgp/core/controllers/project_treemodel.py b/dgp/core/controllers/project_treemodel.py index 4b7cd7d..ea8deb1 100644 --- a/dgp/core/controllers/project_treemodel.py +++ b/dgp/core/controllers/project_treemodel.py @@ -1,9 +1,8 @@ # -*- coding: utf-8 -*- -from typing import Optional +from typing import Optional, Generator -from PyQt5.QtCore import QObject, QModelIndex, pyqtSignal, pyqtSlot, QSortFilterProxyModel, Qt +from PyQt5.QtCore import QObject, QModelIndex, pyqtSignal, QSortFilterProxyModel, Qt from PyQt5.QtGui import QStandardItemModel -from PyQt5.QtWidgets import QWidget from dgp.core.oid import OID from dgp.core.controllers.controller_interfaces import IFlightController, IAirborneController @@ -58,6 +57,11 @@ def __init__(self, project: AirborneProjectController, parent: Optional[QObject] def active_project(self) -> IAirborneController: return self._active + @property + def projects(self) -> Generator[IAirborneController, None, None]: + for i in range(self.rowCount()): + yield self.item(i, 0) + def active_changed(self, flight: IFlightController): self.tabOpenRequested.emit(flight.uid, flight, flight.get_attr('name')) diff --git a/dgp/gui/main.py b/dgp/gui/main.py index f5f9237..30dffcc 100644 --- a/dgp/gui/main.py +++ b/dgp/gui/main.py @@ -248,9 +248,12 @@ def _project_selected(directory): return with prj_file.open('r') as fd: project = AirborneProject.from_json(fd.read()) - control = AirborneProjectController(project) - self.model.add_project(control) - self.save_projects() + if project.uid in [p.uid for p in self.model.projects]: + self.log.warning("Project is already opened") + else: + control = AirborneProjectController(project) + self.model.add_project(control) + self.save_projects() if path is not None: _project_selected([path]) diff --git a/tests/test_gui_main.py b/tests/test_gui_main.py index 98604b7..010b6c3 100644 --- a/tests/test_gui_main.py +++ b/tests/test_gui_main.py @@ -139,16 +139,11 @@ def test_MainWindow_open_project_dialog(window: MainWindow, project_factory, tmp assert 1 == window.model.rowCount() window.open_project_dialog(path=prj2.path) + assert 2 == window.model.rowCount() + # Try to open an already open project + window.open_project_dialog(path=prj2.path) assert 2 == window.model.rowCount() window.open_project_dialog(path=tmpdir) assert 2 == window.model.rowCount() - - - - - - - - diff --git a/tests/test_project_treemodel.py b/tests/test_project_treemodel.py index aaa3184..0b5b681 100644 --- a/tests/test_project_treemodel.py +++ b/tests/test_project_treemodel.py @@ -30,6 +30,9 @@ def test_ProjectTreeModel_multiple_projects(project: AirborneProject, model.item_activated(model.index(prj_ctrl2.row(), 0)) assert prj_ctrl2 == model.active_project + assert prj_ctrl in model.projects + assert prj_ctrl2 in model.projects + def test_ProjectTreeModel_item_activated(prj_ctrl: AirborneProjectController, flt_ctrl: FlightController): From 4800118bd04664066483c5818daf7a19cb989274 Mon Sep 17 00:00:00 2001 From: Zachery Brady Date: Tue, 24 Jul 2018 12:31:40 -0600 Subject: [PATCH 151/236] ENH: Tab navigation shortcuts. Add Window level keyboard shortcuts to navigate between open project tabs (Ctrl+Tab/Ctrl+Shift+Tab) --- dgp/gui/workspace.py | 41 +++++++++++++++++++++++++++++++++-------- 1 file changed, 33 insertions(+), 8 deletions(-) diff --git a/dgp/gui/workspace.py b/dgp/gui/workspace.py index 25a37cf..ec603d9 100644 --- a/dgp/gui/workspace.py +++ b/dgp/gui/workspace.py @@ -2,9 +2,9 @@ import logging -from PyQt5.QtGui import QContextMenuEvent +from PyQt5.QtGui import QContextMenuEvent, QKeySequence from PyQt5.QtCore import Qt, pyqtSignal, pyqtBoundSignal -from PyQt5.QtWidgets import QWidget, QVBoxLayout, QTabWidget +from PyQt5.QtWidgets import QWidget, QVBoxLayout, QTabWidget, QAction import PyQt5.QtWidgets as QtWidgets import PyQt5.QtGui as QtGui @@ -67,21 +67,32 @@ def __init__(self, parent=None): self.setTabsClosable(True) self.setMovable(True) - self._actions = [] # Store action objects to keep a reference so no GC # Allow closing tab via Ctrl+W key shortcut - _close_action = QtWidgets.QAction("Close") + _close_action = QAction("Close") + _close_action.setShortcut(QKeySequence(Qt.CTRL + Qt.Key_W)) _close_action.triggered.connect( lambda: self.tabCloseRequested.emit(self.currentIndex())) - _close_action.setShortcut(QtGui.QKeySequence("Ctrl+W")) - self.addAction(_close_action) - self._actions.append(_close_action) + + tab_right_action = QAction("TabRight") + tab_right_action.setShortcut(QKeySequence(Qt.CTRL + Qt.Key_Tab)) + # tab_right_action.setShortcut(QKeySequence("Ctrl+Tab")) + tab_right_action.triggered.connect(self._tab_right) + + tab_left_action = QAction("TabLeft") + tab_left_action.setShortcut(QKeySequence(Qt.CTRL + Qt.SHIFT + Qt.Key_Tab)) + tab_left_action.triggered.connect(self._tab_left) + + self._actions = [_close_action, tab_right_action, tab_left_action] + for action in self._actions: + self.addAction(action) + # self.addAction(_close_action) def contextMenuEvent(self, event: QContextMenuEvent, *args, **kwargs): tab = self.tabAt(event.pos()) menu = QtWidgets.QMenu() menu.setTitle('Tab: ') - kill_action = QtWidgets.QAction("Kill") + kill_action = QAction("Kill") kill_action.triggered.connect(lambda: self.tabCloseRequested.emit(tab)) menu.addAction(kill_action) @@ -89,6 +100,18 @@ def contextMenuEvent(self, event: QContextMenuEvent, *args, **kwargs): menu.exec_(event.globalPos()) event.accept() + def _tab_right(self, *args): + index = self.currentIndex() + 1 + if index > self.count() - 1: + index = 0 + self.setCurrentIndex(index) + + def _tab_left(self, *args): + index = self.currentIndex() - 1 + if index < 0: + index = self.count() - 1 + self.setCurrentIndex(index) + class MainWorkspace(QtWidgets.QTabWidget): """Custom QTabWidget promoted in main_window.ui supporting a custom @@ -97,3 +120,5 @@ class MainWorkspace(QtWidgets.QTabWidget): def __init__(self, parent=None): super().__init__(parent=parent) self.setTabBar(_WorkspaceTabBar()) + + From 70d492b9479e2649b425d8137b00a9187bf7648b Mon Sep 17 00:00:00 2001 From: Zachery Brady Date: Tue, 24 Jul 2018 15:24:12 -0600 Subject: [PATCH 152/236] ENH: Add Progress Dialog Handling Add handler for project model's progressNotificationRequested, allowing any project item within the project model to request a QProgressDialog to display status during a long-running operation. Fixed type declaration in file_loader QThread object which was causing an unintended application crash when emitting an Exception traceback. --- dgp/core/controllers/project_treemodel.py | 11 ++- dgp/core/file_loader.py | 2 +- dgp/gui/main.py | 89 ++++++++++++++++++----- dgp/gui/utils.py | 25 ++++++- tests/test_gui_main.py | 69 +++++++++++++++++- 5 files changed, 167 insertions(+), 29 deletions(-) diff --git a/dgp/core/controllers/project_treemodel.py b/dgp/core/controllers/project_treemodel.py index ea8deb1..7d7efa0 100644 --- a/dgp/core/controllers/project_treemodel.py +++ b/dgp/core/controllers/project_treemodel.py @@ -2,7 +2,7 @@ from typing import Optional, Generator from PyQt5.QtCore import QObject, QModelIndex, pyqtSignal, QSortFilterProxyModel, Qt -from PyQt5.QtGui import QStandardItemModel +from PyQt5.QtGui import QStandardItemModel, QColor from dgp.core.oid import OID from dgp.core.controllers.controller_interfaces import IFlightController, IAirborneController @@ -36,22 +36,18 @@ class ProjectTreeModel(QStandardItemModel): progressNotificationRequested : pyqtSignal[ProgressEvent] Signal emitted to request a QProgressDialog from the main window. ProgressEvent is passed defining the parameters for the progress bar - progressUpdateRequested : pyqtSignal[ProgressEvent] - Signal emitted to update an active QProgressDialog - ProgressEvent must reference an event already emitted by - progressNotificationRequested """ projectMutated = pyqtSignal() tabOpenRequested = pyqtSignal(OID, object, str) tabCloseRequested = pyqtSignal(OID) progressNotificationRequested = pyqtSignal(ProgressEvent) - progressUpdateRequested = pyqtSignal(ProgressEvent) def __init__(self, project: AirborneProjectController, parent: Optional[QObject]=None): super().__init__(parent) self.appendRow(project) self._active = project + self._active.setBackground(QColor('green')) @property def active_project(self) -> IAirborneController: @@ -83,6 +79,9 @@ def item_activated(self, index: QModelIndex): item.get_parent().set_active_child(item, emit=False) self.active_changed(item) elif isinstance(item, IAirborneController): + for project in self.projects: + project.setBackground(QColor('white')) + item.setBackground(QColor('green')) self._active = item def save_projects(self): diff --git a/dgp/core/file_loader.py b/dgp/core/file_loader.py index b5d4df0..ff2582e 100644 --- a/dgp/core/file_loader.py +++ b/dgp/core/file_loader.py @@ -11,7 +11,7 @@ class FileLoader(QThread): loaded = pyqtSignal(DataFrame, Path) - error = pyqtSignal(Exception) + error = pyqtSignal(object) def __init__(self, path: Path, method: Callable, parent, **kwargs): super().__init__(parent=parent) diff --git a/dgp/gui/main.py b/dgp/gui/main.py index 30dffcc..0eb8c75 100644 --- a/dgp/gui/main.py +++ b/dgp/gui/main.py @@ -4,7 +4,7 @@ import logging import PyQt5.QtWidgets as QtWidgets -from PyQt5.QtCore import Qt, pyqtSlot +from PyQt5.QtCore import Qt, pyqtSlot, QThread from PyQt5.QtGui import QColor from PyQt5.QtWidgets import QMainWindow, QProgressDialog, QFileDialog, QWidget, QDialog @@ -15,7 +15,7 @@ from dgp.core.controllers.project_treemodel import ProjectTreeModel from dgp.core.models.project import AirborneProject from dgp.gui.utils import (ConsoleHandler, LOG_FORMAT, LOG_LEVEL_MAP, - LOG_COLOR_MAP, get_project_file) + LOG_COLOR_MAP, get_project_file, ProgressEvent) from dgp.gui.dialogs.create_project_dialog import CreateProjectDialog from dgp.gui.workspace import WorkspaceTab @@ -54,6 +54,7 @@ def __init__(self, project: AirborneProjectController, *args): # Support for multiple projects self.model.tabOpenRequested.connect(self._tab_open_requested) self.model.tabCloseRequested.connect(self._tab_close_requested) + self.model.progressNotificationRequested.connect(self._progress_event_handler) # Initialize Variables self.import_base_path = pathlib.Path('~').expanduser().joinpath( @@ -65,6 +66,7 @@ def __init__(self, project: AirborneProjectController, *args): self.workspace: QtWidgets.QTabWidget self._open_tabs = {} # Track opened tabs by {uid: tab_widget, ...} + self._progress_events = {} self._mutated = False self._init_slots() @@ -188,23 +190,36 @@ def _tab_index_changed(self, index: int): else: self.log.debug("No flight tab open") - def show_progress_dialog(self, title, start=0, stop=1, label=None, - cancel="Cancel", modal=False, - flags=None) -> QProgressDialog: - """Generate a progress bar to show progress on long running event.""" - if flags is None: + @pyqtSlot(ProgressEvent, name='_progress_event_handler') + def _progress_event_handler(self, event: ProgressEvent): + if event.uid in self._progress_events: + # Update progress + self.log.debug(f"Updating progress bar for UID {event.uid}") + dlg: QProgressDialog = self._progress_events[event.uid] + dlg.setValue(event.value) + + if event.completed: + self.log.debug("Event completed, closing progress dialog") + dlg.reset() + dlg.close() + del self._progress_events[event.uid] + return + + dlg.setLabelText(event.label) + else: flags = (Qt.WindowSystemMenuHint | Qt.WindowTitleHint | Qt.WindowMinimizeButtonHint) - - dialog = QProgressDialog(label, cancel, start, stop, self, flags) - dialog.setWindowTitle(title) - dialog.setModal(modal) - dialog.setMinimumDuration(0) - # dialog.setCancelButton(None) - dialog.setValue(1) - dialog.show() - return dialog + dlg = QProgressDialog(event.label, "", event.start, event.stop, self, flags) + dlg.setMinimumDuration(0) + dlg.setModal(event.modal) + dlg.setValue(event.value) + if event.receiver: + dlg.open(event.receiver) + else: + dlg.setValue(1) + dlg.show() + self._progress_events[event.uid] = dlg def show_progress_status(self, start, stop, label=None) -> QtWidgets.QProgressBar: """Show a progress bar in the windows Status Bar""" @@ -225,6 +240,20 @@ def save_projects(self) -> None: # Project create/open dialog functions ################################### def new_project_dialog(self) -> QDialog: + """pyqtSlot() + Launch a :class:`CreateProjectDialog` to enable the user to create a new + project instance. + If a new project is created it is opened in a new MainWindow if the + dialog's sigProjectCreated new_window flag is True, else it is added + to the current window Project Tree View, below any already opened + projects. + + Returns + ------- + :class:`CreateProjectDialog` + Reference to modal CreateProjectDialog + + """ def _add_project(prj: AirborneProject, new_window: bool): self.log.info("Creating new project.") control = AirborneProjectController(prj) @@ -239,8 +268,31 @@ def _add_project(prj: AirborneProject, new_window: bool): dialog.show() return dialog - def open_project_dialog(self, checked: bool = False, path=None) -> QFileDialog: - # TODO: Enable open in new window option + def open_project_dialog(self, *args, path: pathlib.Path=None) -> QFileDialog: + """pyqtSlot() + Opens an existing project within the current Project MainWindow, + adding the opened project as a tree item to the Project Tree navigator. + + ToDo: Add prompt or flag to launch project in new MainWindow + + Parameters + ---------- + args + Consume positional arguments, some buttons connected to this slot + will pass a 'checked' boolean flag which is not applicable here. + path : :class:`pathlib.Path` + Path to a directory containing a dgp json project file. + Used to programmatically load a project (without launching the + FileDialog). + + Returns + ------- + QFileDialog + Reference to QFileDialog file-browser dialog when called with no + path argument. + + """ + def _project_selected(directory): prj_file = get_project_file(pathlib.Path(directory[0])) if prj_file is None: @@ -264,7 +316,6 @@ def _project_selected(directory): dialog.accepted.connect(lambda: _project_selected(dialog.selectedFiles())) dialog.setModal(True) dialog.show() - return dialog # Active Project Action Slots diff --git a/dgp/gui/utils.py b/dgp/gui/utils.py index 090a134..3915e0d 100644 --- a/dgp/gui/utils.py +++ b/dgp/gui/utils.py @@ -4,6 +4,8 @@ from pathlib import Path from typing import Union, Callable +from dgp.core.oid import OID + LOG_FORMAT = logging.Formatter(fmt="%(asctime)s:%(levelname)s - %(module)s:" "%(funcName)s :: %(message)s", datefmt="%H:%M:%S") @@ -41,7 +43,28 @@ def emit(self, record: logging.LogRecord): class ProgressEvent: - pass + def __init__(self, uid: OID, label: str = None, start: int = 0, + stop: int = 100, value: int = 0, modal: bool = True, + receiver: object = None): + self.uid = uid + self.label = label + self.start = start + self.stop = stop + self._value = value + self.modal = modal + self.receiver = receiver + + @property + def completed(self): + return self._value >= self.stop + + @property + def value(self) -> int: + return self._value + + @value.setter + def value(self, value: int) -> None: + self._value = value def get_project_file(path: Path) -> Union[Path, None]: diff --git a/tests/test_gui_main.py b/tests/test_gui_main.py index 010b6c3..466d92e 100644 --- a/tests/test_gui_main.py +++ b/tests/test_gui_main.py @@ -2,12 +2,15 @@ # Test gui/main.py import logging +import time from pathlib import Path import pytest -from PyQt5.QtTest import QSignalSpy -from PyQt5.QtWidgets import QMainWindow, QFileDialog +from PyQt5.QtCore import Qt +from PyQt5.QtTest import QSignalSpy, QTest +from PyQt5.QtWidgets import QMainWindow, QFileDialog, QProgressDialog, QPushButton +from dgp.core.oid import OID from dgp.core.models.project import AirborneProject from dgp.core.controllers.project_treemodel import ProjectTreeModel from dgp.core.controllers.flight_controller import FlightController @@ -15,6 +18,7 @@ from dgp.gui.main import MainWindow from dgp.gui.workspace import WorkspaceTab from dgp.gui.dialogs.create_project_dialog import CreateProjectDialog +from dgp.gui.utils import ProgressEvent @pytest.fixture @@ -147,3 +151,64 @@ def test_MainWindow_open_project_dialog(window: MainWindow, project_factory, tmp window.open_project_dialog(path=tmpdir) assert 2 == window.model.rowCount() + + +def test_MainWindow_progress_event_handler(window: MainWindow, + flt_ctrl: FlightController): + model: ProjectTreeModel = window.model + progressEventRequested_spy = QSignalSpy(model.progressNotificationRequested) + + prog_event = ProgressEvent(flt_ctrl.uid, label="Loading Data Set") + assert flt_ctrl.uid == prog_event.uid + assert not prog_event.completed + assert 0 == prog_event.value + + model.progressNotificationRequested.emit(prog_event) + assert 1 == len(progressEventRequested_spy) + assert 1 == len(window._progress_events) + assert flt_ctrl.uid in window._progress_events + dlg = window._progress_events[flt_ctrl.uid] + assert isinstance(dlg, QProgressDialog) + assert dlg.isVisible() + assert prog_event.label == dlg.labelText() + assert 1 == dlg.value() + + prog_event2 = ProgressEvent(flt_ctrl.uid, label="Loading Data Set 2", + start=0, stop=100) + prog_event2.value = 35 + model.progressNotificationRequested.emit(prog_event2) + assert 2 == len(progressEventRequested_spy) + + assert dlg == window._progress_events[flt_ctrl.uid] + assert prog_event2.label == dlg.labelText() + assert prog_event2.value == dlg.value() + + prog_event2.value = 100 + assert prog_event2.completed + model.progressNotificationRequested.emit(prog_event2) + assert not dlg.isVisible() + + assert 0 == len(window._progress_events) + + model.progressNotificationRequested.emit(prog_event) + assert 1 == len(window._progress_events) + + # Test progress bar with cancellation callback slot + received = False + + def _receiver(): + nonlocal received + received = True + + _uid = OID() + prog_event_callback = ProgressEvent(_uid, "Testing Callback", receiver=_receiver) + model.progressNotificationRequested.emit(prog_event_callback) + + dlg: QProgressDialog = window._progress_events[_uid] + cancel = QPushButton("Cancel") + dlg.setCancelButton(cancel) + assert dlg.isVisible() + QTest.mouseClick(cancel, Qt.LeftButton) + + assert received + From 0c0c58621acc474734a4d30d480ea225a8e498c1 Mon Sep 17 00:00:00 2001 From: Zachery Brady Date: Wed, 25 Jul 2018 10:01:59 -0600 Subject: [PATCH 153/236] Cleanup workspace.py and add experimental QThread utility class. --- dgp/gui/utils.py | 19 +++++++++++++++++++ dgp/gui/workspace.py | 7 ------- 2 files changed, 19 insertions(+), 7 deletions(-) diff --git a/dgp/gui/utils.py b/dgp/gui/utils.py index 3915e0d..135333b 100644 --- a/dgp/gui/utils.py +++ b/dgp/gui/utils.py @@ -1,9 +1,12 @@ # coding: utf-8 import logging +import time from pathlib import Path from typing import Union, Callable +from PyQt5.QtCore import QThread, pyqtSignal + from dgp.core.oid import OID LOG_FORMAT = logging.Formatter(fmt="%(asctime)s:%(levelname)s - %(module)s:" @@ -67,6 +70,22 @@ def value(self, value: int) -> None: self._value = value +class ThreadedFunction(QThread): + result = pyqtSignal(object) + + def __init__(self, functor, *args, parent): + super().__init__(parent) + self._functor = functor + self._args = args + + def run(self): + try: + res = self._functor(*self._args) + self.result.emit(res) + except Exception as e: + print(e) + + def get_project_file(path: Path) -> Union[Path, None]: """ Attempt to retrieve a project file (*.d2p) from the given dir path, diff --git a/dgp/gui/workspace.py b/dgp/gui/workspace.py index ec603d9..0439d5c 100644 --- a/dgp/gui/workspace.py +++ b/dgp/gui/workspace.py @@ -22,7 +22,6 @@ def __init__(self, flight: FlightController, parent=None, flags=0, **kwargs): super().__init__(parent=parent, flags=Qt.Widget) self.log = logging.getLogger(__name__) self._root: IBaseController = flight - self._layout = QVBoxLayout(self) self._setup_tasktabs() @@ -53,10 +52,6 @@ def uid(self) -> OID: def root(self) -> IBaseController: return self._root - @property - def plot(self): - return self._plot - class _WorkspaceTabBar(QtWidgets.QTabBar): """Custom Tab Bar to allow us to implement a custom Context Menu to @@ -67,7 +62,6 @@ def __init__(self, parent=None): self.setTabsClosable(True) self.setMovable(True) - # Allow closing tab via Ctrl+W key shortcut _close_action = QAction("Close") _close_action.setShortcut(QKeySequence(Qt.CTRL + Qt.Key_W)) _close_action.triggered.connect( @@ -75,7 +69,6 @@ def __init__(self, parent=None): tab_right_action = QAction("TabRight") tab_right_action.setShortcut(QKeySequence(Qt.CTRL + Qt.Key_Tab)) - # tab_right_action.setShortcut(QKeySequence("Ctrl+Tab")) tab_right_action.triggered.connect(self._tab_right) tab_left_action = QAction("TabLeft") From 86e494b9e1e926ff4525d3f3da0907db371f6118 Mon Sep 17 00:00:00 2001 From: Zachery Brady Date: Thu, 26 Jul 2018 11:29:06 -0600 Subject: [PATCH 154/236] Add functionality to close project in project tree. Add ability to close an individual project without exiting theapplication. Moved project dialog slots into the project model, these now check that there is an active project before attempting to open a project dialog. --- dgp/core/controllers/project_controllers.py | 7 ++- dgp/core/controllers/project_treemodel.py | 65 ++++++++++++++++++--- dgp/gui/dialogs/dialog_mixins.py | 2 +- dgp/gui/main.py | 33 +++-------- tests/test_gui_main.py | 2 +- 5 files changed, 72 insertions(+), 37 deletions(-) diff --git a/dgp/core/controllers/project_controllers.py b/dgp/core/controllers/project_controllers.py index 044def5..b2d7871 100644 --- a/dgp/core/controllers/project_controllers.py +++ b/dgp/core/controllers/project_controllers.py @@ -72,7 +72,8 @@ def __init__(self, project: AirborneProject): self._bindings = [ ('addAction', ('Set Project Name', self.set_name)), ('addAction', ('Show in Explorer', self.show_in_explorer)), - ('addAction', ('Project Properties', self.properties_dlg)) + ('addAction', ('Project Properties', self.properties_dlg)), + ('addAction', ('Close Project', self._close_project)) ] # Experiment - declare underlying properties for UI use @@ -295,3 +296,7 @@ def load_data(datafile: DataFile, params: dict, parent: IDataSetController): def properties_dlg(self): # pragma: no cover dlg = ProjectPropertiesDialog(self) dlg.exec_() + + def _close_project(self): + if self.model() is not None: + self.model().close_project(self) diff --git a/dgp/core/controllers/project_treemodel.py b/dgp/core/controllers/project_treemodel.py index 7d7efa0..981b524 100644 --- a/dgp/core/controllers/project_treemodel.py +++ b/dgp/core/controllers/project_treemodel.py @@ -1,9 +1,11 @@ # -*- coding: utf-8 -*- +import logging from typing import Optional, Generator from PyQt5.QtCore import QObject, QModelIndex, pyqtSignal, QSortFilterProxyModel, Qt from PyQt5.QtGui import QStandardItemModel, QColor +from dgp.core.types.enumerations import DataTypes from dgp.core.oid import OID from dgp.core.controllers.controller_interfaces import IFlightController, IAirborneController from dgp.core.controllers.project_controllers import AirborneProjectController @@ -25,6 +27,9 @@ class ProjectTreeModel(QStandardItemModel): Attributes ---------- + activeProjectChanged : pyqtSignal(str) + Signal emitted to notify application that the active project has changed + the name of the newly activated project is passed. projectMutated : pyqtSignal[] Signal emitted to notify application that project data has changed. tabOpenRequested : pyqtSignal[IFlightController] @@ -38,6 +43,7 @@ class ProjectTreeModel(QStandardItemModel): ProgressEvent is passed defining the parameters for the progress bar """ + activeProjectChanged = pyqtSignal(str) projectMutated = pyqtSignal() tabOpenRequested = pyqtSignal(OID, object, str) tabCloseRequested = pyqtSignal(OID) @@ -45,12 +51,19 @@ class ProjectTreeModel(QStandardItemModel): def __init__(self, project: AirborneProjectController, parent: Optional[QObject]=None): super().__init__(parent) + self.log = logging.getLogger(__name__) self.appendRow(project) + project.setBackground(QColor('green')) self._active = project - self._active.setBackground(QColor('green')) @property def active_project(self) -> IAirborneController: + if self._active is None: + try: + self._active = next(self.projects) + self.active_changed(self._active) + except StopIteration: + pass return self._active @property @@ -58,8 +71,13 @@ def projects(self) -> Generator[IAirborneController, None, None]: for i in range(self.rowCount()): yield self.item(i, 0) - def active_changed(self, flight: IFlightController): - self.tabOpenRequested.emit(flight.uid, flight, flight.get_attr('name')) + def active_changed(self, item): + if isinstance(item, IFlightController): + self.tabOpenRequested.emit(item.uid, item, item.get_attr('name')) + elif isinstance(item, IAirborneController): + self._active = item + item.setBackground(QColor('green')) + self.activeProjectChanged.emit(item.get_attr('name')) def add_project(self, project: IAirborneController): self.appendRow(project) @@ -77,18 +95,50 @@ def item_activated(self, index: QModelIndex): item = self.itemFromIndex(index) if isinstance(item, IFlightController): item.get_parent().set_active_child(item, emit=False) - self.active_changed(item) elif isinstance(item, IAirborneController): for project in self.projects: project.setBackground(QColor('white')) - item.setBackground(QColor('green')) - self._active = item + self.active_changed(item) def save_projects(self): for i in range(self.rowCount()): prj: IAirborneController = self.item(i, 0) prj.save() + def close_project(self, project: IAirborneController): + for i in range(project.flight_model.rowCount()): + flt: IFlightController = project.flight_model.item(i, 0) + self.tabCloseRequested.emit(flt.uid) + project.save() + self.removeRow(project.row()) + try: + self._active = next(self.projects) + except StopIteration: + self._active = None + + def import_gps(self): # pragma: no cover + if self.active_project is None: + return self._warn_no_active_project() + self._active.load_file_dlg(DataTypes.TRAJECTORY) + + def import_gravity(self): # pragma: no cover + if self.active_project is None: + return self._warn_no_active_project() + self._active.load_file_dlg(DataTypes.GRAVITY) + + def add_gravimeter(self): # pragma: no cover + if self.active_project is None: + return self._warn_no_active_project() + self._active.add_gravimeter() + + def add_flight(self): # pragma: no cover + if self.active_project is None: + return self._warn_no_active_project() + self._active.add_flight() + + def _warn_no_active_project(self): + self.log.warning("No active projects.") + # Experiment class ProjectTreeProxyModel(QSortFilterProxyModel): # pragma: no cover @@ -118,6 +168,3 @@ def filterAcceptsRow(self, source_row: int, source_parent: QModelIndex): print("Row display value: " + str(disp)) return res - - - diff --git a/dgp/gui/dialogs/dialog_mixins.py b/dgp/gui/dialogs/dialog_mixins.py index d42ad85..47642a0 100644 --- a/dgp/gui/dialogs/dialog_mixins.py +++ b/dgp/gui/dialogs/dialog_mixins.py @@ -6,7 +6,7 @@ QVBoxLayout, QComboBox) __all__ = ['FormValidator', 'VALIDATION_ERR_MSG'] -VALIDATION_ERR_MSG = "Ensure all marked fields are loaded." +VALIDATION_ERR_MSG = "Ensure all marked fields are filled." class FormValidator: diff --git a/dgp/gui/main.py b/dgp/gui/main.py index 0eb8c75..b0c5fec 100644 --- a/dgp/gui/main.py +++ b/dgp/gui/main.py @@ -85,16 +85,16 @@ def _init_slots(self): # pragma: no cover self.action_file_save.triggered.connect(self.save_projects) # Project Menu Actions # - self.action_import_gps.triggered.connect(self._import_gps) - self.action_import_grav.triggered.connect(self._import_gravity) - self.action_add_flight.triggered.connect(self._add_flight) - self.action_add_meter.triggered.connect(self._add_gravimeter) + self.action_import_gps.triggered.connect(self.model.import_gps) + self.action_import_grav.triggered.connect(self.model.import_gravity) + self.action_add_flight.triggered.connect(self.model.add_flight) + self.action_add_meter.triggered.connect(self.model.add_gravimeter) # Project Control Buttons # - self.prj_add_flight.clicked.connect(self._add_flight) - self.prj_add_meter.clicked.connect(self._add_gravimeter) - self.prj_import_gps.clicked.connect(self._import_gps) - self.prj_import_grav.clicked.connect(self._import_gravity) + self.prj_add_flight.clicked.connect(self.model.add_flight) + self.prj_add_meter.clicked.connect(self.model.add_gravimeter) + self.prj_import_gps.clicked.connect(self.model.import_gps) + self.prj_import_grav.clicked.connect(self.model.import_gravity) # Tab Browser Actions # self.workspace.tabCloseRequested.connect(self._tab_close_requested_local) @@ -317,20 +317,3 @@ def _project_selected(directory): dialog.setModal(True) dialog.show() return dialog - - # Active Project Action Slots - @property - def project_(self) -> IAirborneController: - return self.model.active_project - - def _import_gps(self): # pragma: no cover - self.project_.load_file_dlg(enums.DataTypes.TRAJECTORY, ) - - def _import_gravity(self): # pragma: no cover - self.project_.load_file_dlg(enums.DataTypes.GRAVITY, ) - - def _add_gravimeter(self): # pragma: no cover - self.project_.add_gravimeter() - - def _add_flight(self): # pragma: no cover - self.project_.add_flight() diff --git a/tests/test_gui_main.py b/tests/test_gui_main.py index 466d92e..f740881 100644 --- a/tests/test_gui_main.py +++ b/tests/test_gui_main.py @@ -139,7 +139,7 @@ def test_MainWindow_open_project_dialog(window: MainWindow, project_factory, tmp prj2_ctrl.save() prj2_ctrl.hdf5path.touch(exist_ok=True) - assert window.project_.path != prj2_ctrl.path + assert window.model.active_project.path != prj2_ctrl.path assert 1 == window.model.rowCount() window.open_project_dialog(path=prj2.path) From 6bb4105a7683b709f1fe1f48488f7868deacc8c4 Mon Sep 17 00:00:00 2001 From: Zachery Brady Date: Thu, 26 Jul 2018 11:35:49 -0600 Subject: [PATCH 155/236] Add progress notification when loading data-file. --- dgp/core/controllers/project_controllers.py | 5 ++++- 1 file changed, 4 insertions(+), 1 deletion(-) diff --git a/dgp/core/controllers/project_controllers.py b/dgp/core/controllers/project_controllers.py index b2d7871..aad0096 100644 --- a/dgp/core/controllers/project_controllers.py +++ b/dgp/core/controllers/project_controllers.py @@ -18,6 +18,7 @@ from dgp.core.controllers.controller_interfaces import (IAirborneController, IFlightController, IParent, IDataSetController) from dgp.core.hdf5_manager import HDF5Manager +from dgp.gui.utils import ProgressEvent from .flight_controller import FlightController from .gravimeter_controller import GravimeterController from .project_containers import ProjectFolder @@ -271,7 +272,6 @@ def load_file_dlg(self, datatype: DataTypes = DataTypes.GRAVITY, dataset : IDataSetController, optional Set the default Dataset selected when launching the dialog - """ def load_data(datafile: DataFile, params: dict, parent: IDataSetController): if datafile.group == 'gravity': @@ -281,10 +281,13 @@ def load_data(datafile: DataFile, params: dict, parent: IDataSetController): else: self.log.error("Unrecognized data group: " + datafile.group) return + progress_event = ProgressEvent(self.uid, f"Loading {datafile.group}", stop=0) + self.model().progressNotificationRequested.emit(progress_event) loader = FileLoader(datafile.source_path, method, parent=self.get_parent_widget(), **params) loader.loaded.connect(functools.partial(self._post_load, datafile, parent)) + loader.finished.connect(lambda: self.model().progressNotificationRequested.emit(progress_event)) loader.start() dlg = DataImportDialog(self, datatype, parent=self.get_parent_widget()) From 18d302220d1ab08c04399a53df6d62710fa73a31 Mon Sep 17 00:00:00 2001 From: Zachery Brady Date: Thu, 26 Jul 2018 13:37:20 -0600 Subject: [PATCH 156/236] Refactor Tab handling in MainWindow/MainWorkspace Added utility functions to MainWorkspace class to enable tab reference/actions by the tab UID Remove _open_tabs map from MainWindow as it was basically duplicating functionality in MainWorkspace. Tabs can now be looked-up directly by the MainWorkspace Remove slots in MainWindow for handling tab removal, these are now connected directly from the model -> MainWorkspace Clean up imports in MainWindow --- dgp/gui/main.py | 85 ++++++++++++++--------------------- dgp/gui/utils.py | 9 ++++ dgp/gui/workspace.py | 42 +++++++++++------ dgp/gui/workspaces/PlotTab.py | 4 +- dgp/gui/workspaces/TaskTab.py | 9 +++- tests/test_gui_main.py | 12 +++-- 6 files changed, 86 insertions(+), 75 deletions(-) diff --git a/dgp/gui/main.py b/dgp/gui/main.py index b0c5fec..b7fa9ba 100644 --- a/dgp/gui/main.py +++ b/dgp/gui/main.py @@ -4,13 +4,12 @@ import logging import PyQt5.QtWidgets as QtWidgets -from PyQt5.QtCore import Qt, pyqtSlot, QThread +from PyQt5.QtCore import Qt, pyqtSlot from PyQt5.QtGui import QColor -from PyQt5.QtWidgets import QMainWindow, QProgressDialog, QFileDialog, QWidget, QDialog +from PyQt5.QtWidgets import QMainWindow, QProgressDialog, QFileDialog, QDialog -import dgp.core.types.enumerations as enums from dgp.core.oid import OID -from dgp.core.controllers.controller_interfaces import IAirborneController, IBaseController +from dgp.core.controllers.controller_interfaces import IBaseController from dgp.core.controllers.project_controllers import AirborneProjectController from dgp.core.controllers.project_treemodel import ProjectTreeModel from dgp.core.models.project import AirborneProject @@ -18,7 +17,7 @@ LOG_COLOR_MAP, get_project_file, ProgressEvent) from dgp.gui.dialogs.create_project_dialog import CreateProjectDialog -from dgp.gui.workspace import WorkspaceTab +from dgp.gui.workspace import WorkspaceTab, MainWorkspace from dgp.gui.ui.main_window import Ui_MainWindow @@ -29,6 +28,8 @@ def __init__(self, project: AirborneProjectController, *args): super().__init__(*args) self.setupUi(self) + self.workspace: MainWorkspace + self.title = 'Dynamic Gravity Processor [*]' self.setWindowTitle(self.title) @@ -51,21 +52,11 @@ def __init__(self, project: AirborneProjectController, *args): self.project_tree.setModel(self.model) self.project_tree.expandAll() - # Support for multiple projects - self.model.tabOpenRequested.connect(self._tab_open_requested) - self.model.tabCloseRequested.connect(self._tab_close_requested) - self.model.progressNotificationRequested.connect(self._progress_event_handler) - # Initialize Variables self.import_base_path = pathlib.Path('~').expanduser().joinpath( 'Desktop') self._default_status_timeout = 5000 # Status Msg timeout in milli-sec - # Issue #50 Flight Tabs - # workspace is a custom Qt Widget (dgp.gui.workspace) promoted within the .ui file - self.workspace: QtWidgets.QTabWidget - self._open_tabs = {} # Track opened tabs by {uid: tab_widget, ...} - self._progress_events = {} self._mutated = False @@ -74,8 +65,10 @@ def __init__(self, project: AirborneProjectController, *args): def _init_slots(self): # pragma: no cover """Initialize PyQt Signals/Slots for UI Buttons and Menus""" - # Event Signals # - # self.model.flight_changed.connect(self._flight_changed) + # Model Event Signals # + self.model.tabOpenRequested.connect(self._tab_open_requested) + self.model.tabCloseRequested.connect(self.workspace.close_tab) + self.model.progressNotificationRequested.connect(self._progress_event_handler) self.model.projectMutated.connect(self._project_mutated) # File Menu Actions # @@ -97,7 +90,6 @@ def _init_slots(self): # pragma: no cover self.prj_import_grav.clicked.connect(self.model.import_gravity) # Tab Browser Actions # - self.workspace.tabCloseRequested.connect(self._tab_close_requested_local) self.workspace.currentChanged.connect(self._tab_index_changed) # Console Window Actions # @@ -138,52 +130,42 @@ def show_status(self, text, level): self.statusBar().showMessage(text, self._default_status_timeout) def _tab_open_requested(self, uid: OID, controller: IBaseController, label: str): - self.log.debug("Tab Open Requested") - if uid in self._open_tabs: - self.workspace.setCurrentWidget(self._open_tabs[uid]) + """pyqtSlot(OID, IBaseController, str) + + Parameters + ---------- + uid + controller + label + + Returns + ------- + + """ + tab = self.workspace.get_tab(uid) + if tab is not None: + self.workspace.setCurrentWidget(tab) else: self.log.debug("Creating new tab and adding to workspace") ntab = WorkspaceTab(controller) - self._open_tabs[uid] = ntab self.workspace.addTab(ntab, label) self.workspace.setCurrentWidget(ntab) - @pyqtSlot(OID, name='_flight_close_requested') - def _tab_close_requested(self, uid: OID): - """pyqtSlot(:class:`OID`) - - Close/dispose of the tab for the supplied flight if it exists, else - do nothing. - - """ - if uid in self._open_tabs: - tab = self._open_tabs[uid] - index = self.workspace.indexOf(tab) - self.workspace.removeTab(index) - del self._open_tabs[uid] - - @pyqtSlot(int, name='_tab_close_requested_local') - def _tab_close_requested_local(self, index): - """pyqtSlot(int) - - Close/dispose of tab specified by int index. - This slot is used to handle user interaction when clicking the close (x) - button on an opened tab. - - """ - self.log.debug(f'Tab close requested for tab at index {index}') - tab = self.workspace.widget(index) # type: WorkspaceTab - del self._open_tabs[tab.uid] - self.workspace.removeTab(index) - @pyqtSlot(name='_project_mutated') def _project_mutated(self): + """pyqtSlot(None) + Update the MainWindow title bar to reflect unsaved changes in the project + + """ self._mutated = True self.setWindowModified(True) @pyqtSlot(int, name='_tab_index_changed') def _tab_index_changed(self, index: int): - self.log.debug("Tab index changed to %d", index) + """pyqtSlot(int) + Notify the project model when the in-focus Workspace tab changes + + """ current: WorkspaceTab = self.workspace.currentWidget() if current is not None: self.model.notify_tab_changed(current.root) @@ -304,6 +286,7 @@ def _project_selected(directory): self.log.warning("Project is already opened") else: control = AirborneProjectController(project) + control.set_parent_widget(self) self.model.add_project(control) self.save_projects() diff --git a/dgp/gui/utils.py b/dgp/gui/utils.py index 135333b..020dfaf 100644 --- a/dgp/gui/utils.py +++ b/dgp/gui/utils.py @@ -46,6 +46,15 @@ def emit(self, record: logging.LogRecord): class ProgressEvent: + """Progress Event is used to define a request for the application to display + a progress notification to the user, typically in the form of a QProgressBar + + ProgressEvents are emitted from the ProjectTreeModel model class, and should + be captured by the application's MainWindow, which uses the ProgressEvent + object to generate and display a QProgressDialog, or QProgressBar somewhere + within the application. + + """ def __init__(self, uid: OID, label: str = None, start: int = 0, stop: int = 100, value: int = 0, modal: bool = True, receiver: object = None): diff --git a/dgp/gui/workspace.py b/dgp/gui/workspace.py index 0439d5c..c28bfbb 100644 --- a/dgp/gui/workspace.py +++ b/dgp/gui/workspace.py @@ -3,10 +3,9 @@ import logging from PyQt5.QtGui import QContextMenuEvent, QKeySequence -from PyQt5.QtCore import Qt, pyqtSignal, pyqtBoundSignal +from PyQt5.QtCore import Qt from PyQt5.QtWidgets import QWidget, QVBoxLayout, QTabWidget, QAction import PyQt5.QtWidgets as QtWidgets -import PyQt5.QtGui as QtGui from dgp.core.controllers.controller_interfaces import IBaseController from dgp.core.controllers.flight_controller import FlightController @@ -37,9 +36,6 @@ def _setup_tasktabs(self): self._transform_tab = TransformTab("Transforms", self._root) self._tasktabs.addTab(self._transform_tab, "Transforms") - # self._line_proc_tab = LineProcessTab("Line Processing", flight) - # self._tasktabs.addTab(self._line_proc_tab, "Line Processing") - self._tasktabs.setCurrentIndex(0) self._plot_tab.update() @@ -62,9 +58,9 @@ def __init__(self, parent=None): self.setTabsClosable(True) self.setMovable(True) - _close_action = QAction("Close") - _close_action.setShortcut(QKeySequence(Qt.CTRL + Qt.Key_W)) - _close_action.triggered.connect( + key_close_action = QAction("Close") + key_close_action.setShortcut(QKeySequence(Qt.CTRL + Qt.Key_W)) + key_close_action.triggered.connect( lambda: self.tabCloseRequested.emit(self.currentIndex())) tab_right_action = QAction("TabRight") @@ -75,20 +71,19 @@ def __init__(self, parent=None): tab_left_action.setShortcut(QKeySequence(Qt.CTRL + Qt.SHIFT + Qt.Key_Tab)) tab_left_action.triggered.connect(self._tab_left) - self._actions = [_close_action, tab_right_action, tab_left_action] + self._actions = [key_close_action, tab_right_action, tab_left_action] for action in self._actions: self.addAction(action) - # self.addAction(_close_action) def contextMenuEvent(self, event: QContextMenuEvent, *args, **kwargs): tab = self.tabAt(event.pos()) menu = QtWidgets.QMenu() menu.setTitle('Tab: ') - kill_action = QAction("Kill") - kill_action.triggered.connect(lambda: self.tabCloseRequested.emit(tab)) + close_action = QAction("Close") + close_action.triggered.connect(lambda: self.tabCloseRequested.emit(tab)) - menu.addAction(kill_action) + menu.addAction(close_action) menu.exec_(event.globalPos()) event.accept() @@ -113,5 +108,26 @@ class MainWorkspace(QtWidgets.QTabWidget): def __init__(self, parent=None): super().__init__(parent=parent) self.setTabBar(_WorkspaceTabBar()) + self.tabCloseRequested.connect(self.removeTab) + + def widget(self, index: int) -> WorkspaceTab: + return super().widget(index) + + # Utility functions for referencing Tab widgets by OID + + def get_tab(self, uid: OID): + for i in range(self.count()): + tab = self.widget(i) + if tab.uid == uid: + return tab + + def get_tab_index(self, uid: OID): + for i in range(self.count()): + if uid == self.widget(i).uid: + return i + def close_tab(self, uid: OID): + index = self.get_tab_index(uid) + if index is not None: + self.removeTab(index) diff --git a/dgp/gui/workspaces/PlotTab.py b/dgp/gui/workspaces/PlotTab.py index 47ff611..d761269 100644 --- a/dgp/gui/workspaces/PlotTab.py +++ b/dgp/gui/workspaces/PlotTab.py @@ -26,8 +26,8 @@ class PlotTab(TaskTab): """ def __init__(self, label: str, flight: FlightController, **kwargs): - # TODO: It will make more sense to associate a DataSet with the plot vs a Flight - super().__init__(label, flight, **kwargs) + # TODO: It may make more sense to associate a DataSet with the plot vs a Flight + super().__init__(label, root=flight, **kwargs) self.log = logging.getLogger(__name__) self._dataset = flight.get_active_dataset() self.plot: PqtLineSelectPlot = PqtLineSelectPlot(rows=2) diff --git a/dgp/gui/workspaces/TaskTab.py b/dgp/gui/workspaces/TaskTab.py index e9a1dff..a58f470 100644 --- a/dgp/gui/workspaces/TaskTab.py +++ b/dgp/gui/workspaces/TaskTab.py @@ -4,18 +4,23 @@ from PyQt5.QtWidgets import QWidget from dgp.core.oid import OID -from dgp.core.controllers.controller_interfaces import IFlightController, IBaseController +from dgp.core.controllers.controller_interfaces import IBaseController class TaskTab(QWidget): """Base Workspace Tab Widget - Subclass to specialize function + Provides interface to root tab object e.g. Flight, DataSet and a property + to access the UID associated with this tab (via the root object) Parameters ---------- label : str root : :class:`IBaseController` - parent + Root project object encapsulated by this tab + parent : QWidget, Optional + Parent widget kwargs + Key-word arguments passed to QWidget constructor """ def __init__(self, label: str, root: IBaseController, parent=None, **kwargs): diff --git a/tests/test_gui_main.py b/tests/test_gui_main.py index f740881..a0ec2b1 100644 --- a/tests/test_gui_main.py +++ b/tests/test_gui_main.py @@ -49,20 +49,18 @@ def test_MainWindow_tab_open_requested(flt_ctrl: FlightController, tab_open_spy = QSignalSpy(window.model.tabOpenRequested) assert 0 == len(tab_open_spy) - assert 0 == len(window._open_tabs) + assert 0 == window.workspace.count() assert isinstance(flt_ctrl, FlightController) - assert flt_ctrl.uid not in window._open_tabs + assert window.workspace.get_tab(flt_ctrl.uid) is None window.model.active_changed(flt_ctrl) assert 1 == len(tab_open_spy) - assert 1 == len(window._open_tabs) assert 1 == window.workspace.count() assert isinstance(window.workspace.currentWidget(), WorkspaceTab) window.model.active_changed(flt_ctrl) assert 2 == len(tab_open_spy) - assert 1 == len(window._open_tabs) assert 1 == window.workspace.count() @@ -70,7 +68,6 @@ def test_MainWindow_tab_close_requested(flt_ctrl: AirborneProjectController, window: MainWindow): tab_close_spy = QSignalSpy(window.model.tabCloseRequested) assert 0 == len(tab_close_spy) - assert 0 == len(window._open_tabs) assert 0 == window.workspace.count() window.model.active_changed(flt_ctrl) @@ -79,11 +76,12 @@ def test_MainWindow_tab_close_requested(flt_ctrl: AirborneProjectController, window.model.close_flight(flt_ctrl) assert 1 == len(tab_close_spy) assert flt_ctrl.uid == tab_close_spy[0][0] - assert flt_ctrl.uid not in window._open_tabs + assert window.workspace.get_tab(flt_ctrl.uid) is None window.model.active_changed(flt_ctrl) assert 1 == window.workspace.count() - assert flt_ctrl.uid in window._open_tabs + assert window.workspace.get_tab(flt_ctrl.uid) is not None + window.workspace.tabCloseRequested.emit(0) assert 0 == window.workspace.count() From 52119f2dfff3ae99567fab7d0ddac35bdcff0574 Mon Sep 17 00:00:00 2001 From: Zachery Brady Date: Wed, 25 Jul 2018 12:00:03 -0600 Subject: [PATCH 157/236] Flatten project structure by making DataSet direct child of Flight Flight objects can now only have DataSet's as their direct children. Sensors will be linked directly to a DataSet as opposed to linking a Sensor to a Flight object. This is justified conceptually as a single Flight might be flown with multiple gravity meters, each collecting their own set of data (DataSet), so the sensor configuration should be linked to the data/DataSet itself, not the containing flight. --- dgp/core/controllers/flight_controller.py | 60 +++++++++++------------ dgp/core/models/flight.py | 5 +- tests/test_controllers.py | 10 ++-- 3 files changed, 37 insertions(+), 38 deletions(-) diff --git a/dgp/core/controllers/flight_controller.py b/dgp/core/controllers/flight_controller.py index 6ca0d2f..504804d 100644 --- a/dgp/core/controllers/flight_controller.py +++ b/dgp/core/controllers/flight_controller.py @@ -19,7 +19,6 @@ from dgp.core.types.enumerations import DataTypes from dgp.gui.dialogs.add_flight_dialog import AddFlightDialog from . import controller_helpers as helpers -from .project_containers import ProjectFolder FOLDER_ICON = ":/icons/folder_open.png" @@ -42,34 +41,32 @@ class FlightController(IFlightController): The FlightController class also acts as a proxy to the underlying :obj:`Flight` by implementing __getattr__, and allowing access to any @property decorated methods of the Flight. + + Parameters + ---------- + flight : :class:`Flight` + project : :class:`IAirborneController`, Optional + """ inherit_context = True - def __init__(self, flight: Flight, parent: IAirborneController = None): + def __init__(self, flight: Flight, project: IAirborneController = None): """Assemble the view/controller repr from the base flight object.""" super().__init__() self.log = logging.getLogger(__name__) self._flight = flight - self._parent = parent + self._parent = project self.setData(flight, Qt.UserRole) self.setEditable(False) - self._datasets = ProjectFolder("Datasets", FOLDER_ICON) self._active_dataset: DataSetController = None - - self._sensors = ProjectFolder("Sensors", FOLDER_ICON) - self.appendRow(self._datasets) - self.appendRow(self._sensors) - - self._child_control_map = {DataSet: DataSetController, - Gravimeter: GravimeterController} - self._child_map = {DataSet: self._datasets, - Gravimeter: self._sensors} + self._dataset_model = QStandardItemModel() for dataset in self._flight.datasets: control = DataSetController(dataset, self) - self._datasets.appendRow(control) + self.appendRow(control) + self._dataset_model.appendRow(control.clone()) if not len(self._flight.datasets): self.add_child(DataSet(self._parent.hdf5path)) @@ -114,7 +111,7 @@ def datamodel(self) -> Flight: @property def datasets(self) -> QStandardItemModel: - return self._datasets.internal_model + return self._dataset_model @property def project(self) -> IAirborneController: @@ -143,11 +140,12 @@ def set_active_dataset(self, dataset: DataSetController): raise TypeError(f'Cannot set {dataset!r} to active (invalid type)') dataset.active = True self._active_dataset = dataset + dataset._update() def get_active_dataset(self) -> DataSetController: if self._active_dataset is None: - for i in range(self._datasets.rowCount()): - self._active_dataset = self._datasets.child(i, 0) + for i in range(self.rowCount()): + self._active_dataset = self.child(i, 0) break return self._active_dataset @@ -171,13 +169,14 @@ def add_child(self, child: DataSet) -> DataSetController: if child is not a :obj:`DataSet` """ - child_key = type(child) - if child_key not in self._child_control_map: - raise TypeError("Invalid child type {0!s} supplied".format(child_key)) + if not isinstance(child, DataSet): + raise TypeError(f'Invalid child of type {type(child)} supplied to' + f'FlightController, must be {type(DataSet)}') self._flight.datasets.append(child) control = DataSetController(child, self) - self._datasets.appendRow(control) + self.appendRow(control) + self._dataset_model.appendRow(control.clone()) return control def remove_child(self, uid: Union[OID, str], confirm: bool = True) -> bool: @@ -205,26 +204,27 @@ def remove_child(self, uid: Union[OID, str], confirm: bool = True) -> bool: if child is not a :obj:`FlightLine` or :obj:`DataFile` """ - ctrl = self.get_child(uid) - if type(ctrl) not in self._child_control_map.values(): - raise TypeError("Invalid child uid supplied. Invalid child type.") + child = self.get_child(uid) + if child is None: + raise KeyError(f'Child with uid {uid!s} not in flight {self!s}') if confirm: # pragma: no cover if not helpers.confirm_action("Confirm Deletion", - "Are you sure you want to delete %s" % str(ctrl), + f'Are you sure you want to delete {child!r}', self.get_parent().get_parent()): return False - if self._active_dataset == ctrl: + if self._active_dataset == child: self._active_dataset = None - self._flight.datasets.remove(ctrl.datamodel) - self._child_map[type(ctrl.datamodel)].removeRow(ctrl.row()) + self._flight.datasets.remove(child.datamodel) + self._dataset_model.removeRow(child.row()) + self.removeRow(child.row()) return True def get_child(self, uid: Union[OID, str]) -> DataSetController: - """Retrieve a child controller by UIU + """Retrieve a child controller by UID A string base_uuid can be passed, or an :obj:`OID` object for comparison """ - for item in self._datasets.items(): # type: DataSetController + for item in (self.child(i, 0) for i in range(self.rowCount())): # type: DataSetController if item.uid == uid: return item diff --git a/dgp/core/models/flight.py b/dgp/core/models/flight.py index 5853037..336a109 100644 --- a/dgp/core/models/flight.py +++ b/dgp/core/models/flight.py @@ -39,8 +39,8 @@ class Flight: within the flight. """ - __slots__ = ('uid', 'name', 'datasets', 'meter', - 'date', 'notes', 'sequence', 'duration', '_parent') + __slots__ = ('uid', 'name', 'datasets', 'date', 'notes', 'sequence', + 'duration', '_parent') def __init__(self, name: str, date: Optional[datetime] = None, notes: Optional[str] = None, sequence: int = 0, duration: int = 0, meter: str = None, @@ -55,7 +55,6 @@ def __init__(self, name: str, date: Optional[datetime] = None, notes: Optional[s self.duration = duration self.datasets = kwargs.get('datasets', []) # type: List[DataSet] - self.meter: Gravimeter = meter @property def parent(self): diff --git a/tests/test_controllers.py b/tests/test_controllers.py index 9fba1ad..7a35d42 100644 --- a/tests/test_controllers.py +++ b/tests/test_controllers.py @@ -123,7 +123,7 @@ def test_flight_controller(project: AirborneProject): fc.set_parent(None) - with pytest.raises(TypeError): + with pytest.raises(KeyError): fc.remove_child("Not a real child", confirm=False) assert dsc2 == fc.get_child(dsc2.uid) @@ -344,16 +344,16 @@ def test_dataset_reparenting(project: AirborneProject): assert isinstance(dsctrl, DataSetController) assert 1 == len(flt1ctrl.datamodel.datasets) - assert 1 == flt1ctrl.datasets.rowCount() + assert 1 == flt1ctrl.rowCount() assert 1 == len(flt2ctrl.datamodel.datasets) - assert 1 == flt2ctrl.datasets.rowCount() + assert 1 == flt2ctrl.rowCount() assert flt1ctrl == dsctrl.get_parent() dsctrl.set_parent(flt2ctrl) - assert 2 == flt2ctrl.datasets.rowCount() - assert 0 == flt1ctrl.datasets.rowCount() + assert 2 == flt2ctrl.rowCount() + assert 0 == flt1ctrl.rowCount() assert flt2ctrl == dsctrl.get_parent() # DataSetController is recreated when added to new flight. From b3e60d6799e7ac2d58d3dabf59b2ea1666b78bfd Mon Sep 17 00:00:00 2001 From: Zachery Brady Date: Wed, 25 Jul 2018 14:51:28 -0600 Subject: [PATCH 158/236] Refactor DataFile model class Remove superfluous parent attribute in DataFile - each DataFile object has its own unique ID, no reason to complicate the HDF node path with a parent UID Renamed data.py to datafile.py to more accurately reflect model naming conventions. --- dgp/core/controllers/datafile_controller.py | 2 +- dgp/core/controllers/dataset_controller.py | 12 +++- dgp/core/controllers/project_controllers.py | 4 +- dgp/core/hdf5_manager.py | 17 +++--- dgp/core/models/data.py | 50 ----------------- dgp/core/models/datafile.py | 62 +++++++++++++++++++++ dgp/core/models/dataset.py | 7 +-- dgp/core/models/project.py | 2 +- dgp/gui/dialogs/data_import_dialog.py | 7 +-- tests/conftest.py | 2 +- tests/test_controllers.py | 2 +- tests/test_dialogs.py | 1 - tests/test_hdf5store.py | 22 ++++---- tests/test_models.py | 2 +- tests/test_serialization.py | 2 +- 15 files changed, 102 insertions(+), 92 deletions(-) delete mode 100644 dgp/core/models/data.py create mode 100644 dgp/core/models/datafile.py diff --git a/dgp/core/controllers/datafile_controller.py b/dgp/core/controllers/datafile_controller.py index 9b4a698..a72a89f 100644 --- a/dgp/core/controllers/datafile_controller.py +++ b/dgp/core/controllers/datafile_controller.py @@ -7,7 +7,7 @@ from dgp.core.controllers.controller_interfaces import IDataSetController from dgp.core.controllers.controller_interfaces import IFlightController from dgp.core.controllers.controller_mixins import AttributeProxy -from dgp.core.models.data import DataFile +from dgp.core.models.datafile import DataFile GRAV_ICON = ":/icons/gravity" diff --git a/dgp/core/controllers/dataset_controller.py b/dgp/core/controllers/dataset_controller.py index 799119b..e6b1bb7 100644 --- a/dgp/core/controllers/dataset_controller.py +++ b/dgp/core/controllers/dataset_controller.py @@ -1,12 +1,14 @@ # -*- coding: utf-8 -*- +from pathlib import Path from typing import List, Union from PyQt5.QtCore import Qt from PyQt5.QtGui import QColor, QBrush, QIcon, QStandardItemModel, QStandardItem -from pandas import DataFrame +from pandas import DataFrame, concat +from dgp.core.hdf5_manager import HDF5Manager from dgp.core.controllers.project_containers import ProjectFolder -from dgp.core.models.data import DataFile +from dgp.core.models.datafile import DataFile from dgp.core.types.enumerations import DataTypes from dgp.core.oid import OID from dgp.core.controllers.controller_interfaces import (IFlightController, @@ -95,6 +97,10 @@ def clone(self): def uid(self) -> OID: return self._dataset.uid + @property + def hdfpath(self) -> Path: + return self._flight.get_parent().hdf5path + @property def menu_bindings(self): # pragma: no cover return self._menu_bindings @@ -158,7 +164,7 @@ def set_parent(self, parent: IFlightController) -> None: self._update() def add_datafile(self, datafile: DataFile) -> None: - datafile.set_parent(self) + # datafile.set_parent(self) if datafile.group == 'gravity': self._dataset.gravity = datafile self._grav_file.set_datafile(datafile) diff --git a/dgp/core/controllers/project_controllers.py b/dgp/core/controllers/project_controllers.py index aad0096..ebed81c 100644 --- a/dgp/core/controllers/project_controllers.py +++ b/dgp/core/controllers/project_controllers.py @@ -28,7 +28,7 @@ from dgp.gui.dialogs.add_gravimeter_dialog import AddGravimeterDialog from dgp.gui.dialogs.data_import_dialog import DataImportDialog from dgp.gui.dialogs.project_properties_dialog import ProjectPropertiesDialog -from dgp.core.models.data import DataFile +from dgp.core.models.datafile import DataFile from dgp.core.models.flight import Flight from dgp.core.models.meter import Gravimeter from dgp.core.models.project import GravityProject, AirborneProject @@ -246,7 +246,7 @@ def _post_load(self, datafile: DataFile, dataset: IDataSetController, """ # TODO: Insert DataFile into appropriate child - datafile.set_parent(dataset) + # datafile.set_parent(dataset) if HDF5Manager.save_data(data, datafile, path=self.hdf5path): self.log.info("Data imported and saved to HDF5 Store") dataset.add_datafile(datafile) diff --git a/dgp/core/hdf5_manager.py b/dgp/core/hdf5_manager.py index 45cb741..2534a9a 100644 --- a/dgp/core/hdf5_manager.py +++ b/dgp/core/hdf5_manager.py @@ -8,7 +8,7 @@ import pandas.io.pytables from pandas import HDFStore, DataFrame -from dgp.core.models.data import DataFile +from dgp.core.models.datafile import DataFile __all__ = ['HDF5Manager'] # Suppress PyTables warnings due to mixed data-types (typically NaN's in cols) @@ -73,12 +73,12 @@ def save_data(cls, data: DataFrame, datafile: DataFile, path: Path) -> bool: with HDFStore(str(path)) as hdf: try: - hdf.put(datafile.hdfpath, data, format='fixed', data_columns=True) + hdf.put(datafile.nodepath, data, format='fixed', data_columns=True) except (IOError, PermissionError): # pragma: no cover cls.log.exception("Exception writing file to HDF5 _store.") raise else: - cls.log.info("Wrote file to HDF5 _store at node: %s", datafile.hdfpath) + cls.log.info(f"Wrote file to HDF5 _store at node: {datafile.nodepath}") return True @@ -108,14 +108,14 @@ def load_data(cls, datafile: DataFile, path: Path) -> DataFrame: If data key (/flightid/grpid/uid) does not exist """ if datafile in cls._cache: - cls.log.info("Loading data {} from cache.".format(datafile.uid)) + cls.log.info(f"Loading data node {datafile.uid!s} from cache.") return cls._cache[datafile] else: - cls.log.debug("Loading data %s from hdf5 _store.", datafile.hdfpath) + cls.log.debug(f"Loading data node {datafile.nodepath} from hdf5store.") try: with HDFStore(str(path), mode='r') as hdf: - data = hdf.get(datafile.hdfpath) + data = hdf.get(datafile.nodepath) except OSError as e: cls.log.exception(e) raise FileNotFoundError from e @@ -142,7 +142,7 @@ def list_node_attrs(cls, nodepath: str, path: Path) -> list: try: return hdf.get_node(nodepath)._v_attrs._v_attrnames except tables.exceptions.NoSuchNodeError: - raise KeyError("Specified path %s does not exist.", path) + raise KeyError(f"Specified node {nodepath} does not exist.") @classmethod def _get_node_attr(cls, nodepath, attrname, path: Path): @@ -158,8 +158,7 @@ def _set_node_attr(cls, nodepath: str, attrname: str, value: Any, path: Path): try: hdf.set_node_attr(nodepath, attrname, value) except tables.exceptions.NoSuchNodeError: - cls.log.error("Unable to set attribute on path: %s key does not exist.") - raise KeyError("Node %s does not exist", nodepath) + raise KeyError(f"Specified node {nodepath} does not exist") else: return True diff --git a/dgp/core/models/data.py b/dgp/core/models/data.py deleted file mode 100644 index 57e6e56..0000000 --- a/dgp/core/models/data.py +++ /dev/null @@ -1,50 +0,0 @@ -# -*- encoding: utf-8 -*- -from datetime import datetime -from pathlib import Path -from typing import Optional - -from dgp.core.oid import OID - - -class DataFile: - __slots__ = ('parent', 'uid', 'date', 'name', 'group', 'source_path', - 'column_format') - - def __init__(self, group: str, date: datetime, source_path: Path, - name: Optional[str] = None, column_format=None, - uid: Optional[OID] = None, parent=None): - self.parent = parent - self.uid = uid or OID(self) - self.uid.set_pointer(self) - self.group = group.lower() - self.date = date - self.source_path = Path(source_path) - self.name = name or self.source_path.name - self.column_format = column_format - - @property - def label(self) -> str: - return "[%s] %s" % (self.group, self.name) - - @property - def hdfpath(self) -> str: - """Construct the HDF5 Node path where the DataFile is stored - - Notes - ----- - An underscore (_) is prepended to the parent and uid ID's to suppress the NaturalNameWarning - generated if the UID begins with a number (invalid Python identifier). - """ - return '/_{parent}/{group}/_{uid}'.format(parent=self.parent.uid.base_uuid, - group=self.group, uid=self.uid.base_uuid) - - def set_parent(self, parent): - self.parent = parent - - def __str__(self): - return "(%s) :: %s" % (self.group, self.hdfpath) - - def __hash__(self): - return hash(self.uid) - - diff --git a/dgp/core/models/datafile.py b/dgp/core/models/datafile.py new file mode 100644 index 0000000..dfe9687 --- /dev/null +++ b/dgp/core/models/datafile.py @@ -0,0 +1,62 @@ +# -*- encoding: utf-8 -*- +from datetime import datetime +from pathlib import Path +from typing import Optional + +from dgp.core.oid import OID + + +class DataFile: + """The DataFile is a model reference object which maintains the path and + identifier for an entity stored in a project's HDF5 file database. + + In addition to storing the HDF5 Node Path, the DataFile maintains some + meta-data attributes such as the date associated with the file, its original + absolute path on the file-system where it was imported, the data + column-format used to import the data, and the name of the file. + + The reason why the DataFile does not provide any direct access to the data + it references is due to the nature of the project structure. The HDF5 data + file is assumed to contain many data entities, and is maintained by the base + project. To avoid passing references to the HDF5 file throughout the project + hierarchy, we delegate the loading of data to a higher level controller, + which simply uses the :class:`DataFile` as the address. + + """ + __slots__ = ('uid', 'date', 'name', 'group', 'source_path', + 'column_format') + + def __init__(self, group: str, date: datetime, source_path: Path, + name: Optional[str] = None, column_format=None, + uid: Optional[OID] = None): + self.uid = uid or OID(self) + self.uid.set_pointer(self) + self.group = group.lower() + self.date = date + self.source_path = Path(source_path) + self.name = name or self.source_path.name + self.column_format = column_format + + @property + def label(self) -> str: + return f'[{self.group}] {self.name}' + + @property + def nodepath(self) -> str: + """Returns the HDF5 Node where the data associated with this + DataFile is stored within the project's HDF5 file. + + Notes + ----- + An underscore (_) is prepended to the parent and uid ID's to avoid the + NaturalNameWarning generated if the UID begins with a number. + """ + return f'/{self.group}/_{self.uid.base_uuid}' + + def __str__(self): + return f'({self.group}) :: {self.nodepath}' + + def __hash__(self): + return hash(self.uid) + + diff --git a/dgp/core/models/dataset.py b/dgp/core/models/dataset.py index e929a68..0ba7a72 100644 --- a/dgp/core/models/dataset.py +++ b/dgp/core/models/dataset.py @@ -1,12 +1,9 @@ # -*- coding: utf-8 -*- from pathlib import Path -from typing import List, Union +from typing import List from datetime import datetime -import pandas as pd - -from dgp.core.hdf5_manager import HDF5Manager -from dgp.core.models.data import DataFile +from dgp.core.models.datafile import DataFile from dgp.core.oid import OID __all__ = ['DataSegment', 'DataSet'] diff --git a/dgp/core/models/project.py b/dgp/core/models/project.py index 85bd9f0..6162187 100644 --- a/dgp/core/models/project.py +++ b/dgp/core/models/project.py @@ -16,7 +16,7 @@ from .flight import Flight from .meter import Gravimeter from .dataset import DataSet, DataSegment -from .data import DataFile +from .datafile import DataFile PROJECT_FILE_NAME = 'dgp.json' project_entities = {'Flight': Flight, diff --git a/dgp/gui/dialogs/data_import_dialog.py b/dgp/gui/dialogs/data_import_dialog.py index b77a3e2..3e63d0f 100644 --- a/dgp/gui/dialogs/data_import_dialog.py +++ b/dgp/gui/dialogs/data_import_dialog.py @@ -10,11 +10,10 @@ from PyQt5.QtGui import QStandardItemModel, QStandardItem, QIcon, QRegExpValidator from PyQt5.QtWidgets import QDialog, QFileDialog, QListWidgetItem, QCalendarWidget, QWidget, QFormLayout -import dgp.core.controllers.gravimeter_controller as mtr -from dgp.core.oid import OID +from dgp.core.controllers.gravimeter_controller import GravimeterController from dgp.core.controllers.dataset_controller import DataSetController from dgp.core.controllers.controller_interfaces import IAirborneController, IFlightController, IDataSetController -from dgp.core.models.data import DataFile +from dgp.core.models.datafile import DataFile from dgp.core.types.enumerations import DataTypes from dgp.gui.ui.data_import_dialog import Ui_DataImportDialog from .dialog_mixins import FormValidator @@ -238,7 +237,7 @@ def _gravimeter_changed(self, index: int): # pragma: no cover if not meter_ctrl: self.log.debug("No meter available") return - if isinstance(meter_ctrl, mtr.GravimeterController): + if isinstance(meter_ctrl, GravimeterController): sensor_type = meter_ctrl.get_attr('type') or "Unknown" self.qle_sensortype.setText(sensor_type) self.qle_grav_format.setText(meter_ctrl.get_attr('column_format')) diff --git a/tests/conftest.py b/tests/conftest.py index 06fdffb..a56f9b9 100644 --- a/tests/conftest.py +++ b/tests/conftest.py @@ -7,7 +7,7 @@ from dgp.core.controllers.project_controllers import AirborneProjectController from dgp.core.hdf5_manager import HDF5_NAME -from dgp.core.models.data import DataFile +from dgp.core.models.datafile import DataFile from dgp.core.models.dataset import DataSegment, DataSet from dgp.core.models.flight import Flight from dgp.core.models.meter import Gravimeter diff --git a/tests/test_controllers.py b/tests/test_controllers.py index 7a35d42..9e7183b 100644 --- a/tests/test_controllers.py +++ b/tests/test_controllers.py @@ -22,7 +22,7 @@ ACTIVE_COLOR, INACTIVE_COLOR) from dgp.core.models.meter import Gravimeter -from dgp.core.models.data import DataFile +from dgp.core.models.datafile import DataFile from dgp.core.controllers.flight_controller import FlightController from dgp.core.models.flight import Flight from .context import APP diff --git a/tests/test_dialogs.py b/tests/test_dialogs.py index 76a9eef..e9aef1c 100644 --- a/tests/test_dialogs.py +++ b/tests/test_dialogs.py @@ -14,7 +14,6 @@ from dgp.core.models.dataset import DataSet from dgp.core.controllers.flight_controller import FlightController -from dgp.core.models.data import DataFile from dgp.core.models.flight import Flight from dgp.core.controllers.project_controllers import AirborneProjectController from dgp.core.models.project import AirborneProject diff --git a/tests/test_hdf5store.py b/tests/test_hdf5store.py index 05f153f..baa2995 100644 --- a/tests/test_hdf5store.py +++ b/tests/test_hdf5store.py @@ -7,7 +7,7 @@ from pandas import DataFrame from dgp.core.models.flight import Flight -from dgp.core.models.data import DataFile +from dgp.core.models.datafile import DataFile from dgp.core.hdf5_manager import HDF5Manager HDF5_FILE = "test.hdf5" @@ -15,8 +15,7 @@ def test_datastore_save_load(gravdata: DataFrame, hdf5file: Path): flt = Flight('Test-Flight') - datafile = DataFile('gravity', datetime.now(), Path('tests/test.dat'), - parent=flt) + datafile = DataFile('gravity', datetime.now(), Path('tests/test.dat')) assert HDF5Manager.save_data(gravdata, datafile, path=hdf5file) loaded = HDF5Manager.load_data(datafile, path=hdf5file) assert gravdata.equals(loaded) @@ -31,37 +30,36 @@ def test_datastore_save_load(gravdata: DataFrame, hdf5file: Path): HDF5Manager.load_data(datafile, path=Path('.nonexistent.hdf5')) empty_datafile = DataFile('trajectory', datetime.now(), - Path('tests/test.dat'), parent=flt) + Path('tests/test.dat')) with pytest.raises(KeyError): HDF5Manager.load_data(empty_datafile, path=hdf5file) def test_ds_metadata(gravdata: DataFrame, hdf5file: Path): flt = Flight('TestMetadataFlight') - datafile = DataFile('gravity', datetime.now(), source_path=Path('./test.dat'), - parent=flt) + datafile = DataFile('gravity', datetime.now(), source_path=Path('./test.dat')) empty_datafile = DataFile('trajectory', datetime.now(), - Path('tests/test.dat'), parent=flt) + Path('tests/test.dat')) HDF5Manager.save_data(gravdata, datafile, path=hdf5file) attr_key = 'test_attr' attr_value = {'a': 'complex', 'v': 'value'} # Assert True result first - assert HDF5Manager._set_node_attr(datafile.hdfpath, attr_key, attr_value, hdf5file) + assert HDF5Manager._set_node_attr(datafile.nodepath, attr_key, attr_value, hdf5file) # Validate value was stored, and can be retrieved - result = HDF5Manager._get_node_attr(datafile.hdfpath, attr_key, hdf5file) + result = HDF5Manager._get_node_attr(datafile.nodepath, attr_key, hdf5file) assert attr_value == result # Test retrieval of keys for a specified node - assert attr_key in HDF5Manager.list_node_attrs(datafile.hdfpath, hdf5file) + assert attr_key in HDF5Manager.list_node_attrs(datafile.nodepath, hdf5file) with pytest.raises(KeyError): HDF5Manager._set_node_attr('/invalid/node/path', attr_key, attr_value, hdf5file) with pytest.raises(KeyError): - HDF5Manager.list_node_attrs(empty_datafile.hdfpath, hdf5file) + HDF5Manager.list_node_attrs(empty_datafile.nodepath, hdf5file) - assert HDF5Manager._get_node_attr(empty_datafile.hdfpath, 'test_attr', + assert HDF5Manager._get_node_attr(empty_datafile.nodepath, 'test_attr', hdf5file) is None diff --git a/tests/test_models.py b/tests/test_models.py index 0158c08..297af29 100644 --- a/tests/test_models.py +++ b/tests/test_models.py @@ -15,7 +15,7 @@ from dgp.core.models.project import AirborneProject from dgp.core.hdf5_manager import HDF5Manager -from dgp.core.models.data import DataFile +from dgp.core.models.datafile import DataFile from dgp.core.models.dataset import DataSet from dgp.core.models import flight from dgp.core.models.meter import Gravimeter diff --git a/tests/test_serialization.py b/tests/test_serialization.py index 09d5c7d..0f67473 100644 --- a/tests/test_serialization.py +++ b/tests/test_serialization.py @@ -8,7 +8,7 @@ import pandas as pd import pytest -from dgp.core.models.data import DataFile +from dgp.core.models.datafile import DataFile from dgp.core.models.flight import Flight from dgp.core.models.project import AirborneProject, ProjectEncoder, ProjectDecoder, PROJECT_FILE_NAME From 08c92d73933c111f525968847caac64af8186b02 Mon Sep 17 00:00:00 2001 From: Zachery Brady Date: Thu, 26 Jul 2018 09:15:22 -0600 Subject: [PATCH 159/236] Refactor DataSet, remove unnecesarry linking to parent. Removed path and parent params/attributes from DataSet model class. This was unnecesarry, and would complicate matters further when implementing the ability to move datasets between flights (in the future). Also re-wrote some of the logic in the DataSet and DataSetController to enable it to lazy-load data from the HDF Store only when it was accessed for the first time. Previously calls were being unintentionally made to load data from the DataSetController constructor, meaning that every DataFrame in the project would be loaded at project-load time - causing long/unresponsive loading. --- dgp/core/controllers/dataset_controller.py | 82 +++++++++++++--------- dgp/core/controllers/flight_controller.py | 4 +- dgp/core/models/dataset.py | 49 ++----------- tests/conftest.py | 3 +- tests/test_controllers.py | 8 +-- tests/test_models.py | 4 +- 6 files changed, 63 insertions(+), 87 deletions(-) diff --git a/dgp/core/controllers/dataset_controller.py b/dgp/core/controllers/dataset_controller.py index e6b1bb7..e4d4308 100644 --- a/dgp/core/controllers/dataset_controller.py +++ b/dgp/core/controllers/dataset_controller.py @@ -50,8 +50,7 @@ def __init__(self, dataset: DataSet, flight: IFlightController, name: str = ""): super().__init__() self._dataset = dataset - self._flight = flight - self._dataset.parent = flight + self._flight: IFlightController = flight self._project = self._flight.project self._name = name self._active = False @@ -74,9 +73,11 @@ def __init__(self, dataset: DataSet, flight: IFlightController, self.appendRow(self._traj_file) self.appendRow(self._segments) - self._dataframe = None + self._gravity: DataFrame = DataFrame() + self._trajectory: DataFrame = DataFrame() + self._dataframe: DataFrame = DataFrame() + self._channel_model = QStandardItemModel() - self._update() self._menu_bindings = [ # pragma: no cover ('addAction', ('Set Name', lambda: None)), @@ -111,6 +112,8 @@ def datamodel(self) -> DataSet: @property def series_model(self) -> QStandardItemModel: + if 0 == self._channel_model.rowCount(): + self._update_channel_model() return self._channel_model @property @@ -121,38 +124,52 @@ def segment_model(self) -> QStandardItemModel: def columns(self) -> List[str]: return [col for col in self.dataframe()] - def _update(self): - if self.dataframe() is not None: - self._channel_model.clear() - for col in self._dataframe: - series = QStandardItem(col) - series.setData(self._dataframe[col], Qt.UserRole) - self._channel_model.appendRow(series) + def _update_channel_model(self): + df = self.dataframe() + self._channel_model.clear() + for col in df: + series_item = QStandardItem(col) + series_item.setData(df[col], Qt.UserRole) + self._channel_model.appendRow(series_item) @property - def gravity(self) -> Union[DataFrame, None]: - return self._dataset.gravity_frame + def gravity(self) -> Union[DataFrame]: + if not self._gravity.empty: + return self._gravity + try: + self._gravity = HDF5Manager.load_data(self._dataset.gravity, self.hdfpath) + except Exception as e: + pass + finally: + return self._gravity @property def trajectory(self) -> Union[DataFrame, None]: - return self._dataset.trajectory_frame + if not self._trajectory.empty: + return self._trajectory + try: + self._trajectory = HDF5Manager.load_data(self._dataset.trajectory, self.hdfpath) + except Exception as e: + pass + finally: + return self._trajectory def dataframe(self) -> DataFrame: - if self._dataframe is None: - self._dataframe = self._dataset.dataframe + if self._dataframe.empty: + self._dataframe: DataFrame = concat([self.gravity, self.trajectory]) return self._dataframe - def slice(self, segment_uid: OID): - df = self.dataframe() - if df is None: - return None - - segment = self.get_segment(segment_uid).datamodel - # start = df.index.searchsorted(segment.start) - # stop = df.index.searchsorted(segment.stop) - - segment_df = df.loc[segment.start:segment.stop] - return segment_df + # def slice(self, segment_uid: OID): + # df = self.dataframe() + # if df is None: + # return None + # + # segment = self.get_segment(segment_uid).datamodel + # # start = df.index.searchsorted(segment.start) + # # stop = df.index.searchsorted(segment.stop) + # + # segment_df = df.loc[segment.start:segment.stop] + # return segment_df def get_parent(self) -> IFlightController: return self._flight @@ -161,21 +178,22 @@ def set_parent(self, parent: IFlightController) -> None: self._flight.remove_child(self.uid, confirm=False) self._flight = parent self._flight.add_child(self.datamodel) - self._update() def add_datafile(self, datafile: DataFile) -> None: # datafile.set_parent(self) if datafile.group == 'gravity': - self._dataset.gravity = datafile + self.datamodel.gravity = datafile self._grav_file.set_datafile(datafile) + self._gravity = DataFrame() elif datafile.group == 'trajectory': - self._dataset.trajectory = datafile + self.datamodel.trajectory = datafile self._traj_file.set_datafile(datafile) + self._trajectory = DataFrame() else: raise TypeError("Invalid DataFile group provided.") - self._dataframe = None - self._update() + self._dataframe = DataFrame() + self._update_channel_model() def get_datafile(self, group) -> DataFileController: return self._child_map[group] diff --git a/dgp/core/controllers/flight_controller.py b/dgp/core/controllers/flight_controller.py index 504804d..f17400f 100644 --- a/dgp/core/controllers/flight_controller.py +++ b/dgp/core/controllers/flight_controller.py @@ -68,8 +68,9 @@ def __init__(self, flight: Flight, project: IAirborneController = None): self.appendRow(control) self._dataset_model.appendRow(control.clone()) + # Add default DataSet if none defined if not len(self._flight.datasets): - self.add_child(DataSet(self._parent.hdf5path)) + self.add_child(DataSet()) # TODO: Consider adding MenuPrototype class which could provide the means to build QMenu self._bindings = [ # pragma: no cover @@ -140,7 +141,6 @@ def set_active_dataset(self, dataset: DataSetController): raise TypeError(f'Cannot set {dataset!r} to active (invalid type)') dataset.active = True self._active_dataset = dataset - dataset._update() def get_active_dataset(self) -> DataSetController: if self._active_dataset is None: diff --git a/dgp/core/models/dataset.py b/dgp/core/models/dataset.py index 0ba7a72..e3582be 100644 --- a/dgp/core/models/dataset.py +++ b/dgp/core/models/dataset.py @@ -59,7 +59,6 @@ class DataSet: segments : List[:obj:`DataSegment`], optional Optional list of DataSegment's to initialize this DataSet with uid - parent Notes ----- @@ -67,56 +66,16 @@ class DataSet: a DataSet, they will not be permitted as direct children of Flights """ - def __init__(self, path: Path = None, gravity: DataFile = None, - trajectory: DataFile = None, segments: List[DataSegment]=None, - uid: OID = None, parent=None): - self._parent = parent + def __init__(self, gravity: DataFile = None, trajectory: DataFile = None, + segments: List[DataSegment]=None, sensor=None, uid: OID = None): self.uid = uid or OID(self) self.uid.set_pointer(self) self.segments = segments or [] - self._path: Path = path - self.gravity = gravity - if self.gravity is not None: - self.gravity.set_parent(self) - self.trajectory = trajectory - if self.trajectory is not None: - self.trajectory.set_parent(self) + self.gravity: DataFile = gravity + self.trajectory: DataFile = trajectory @property - def gravity_frame(self) -> Union[pd.DataFrame, None]: - try: - return HDF5Manager.load_data(self.gravity, self._path) - except Exception: - return None - - @property - def trajectory_frame(self) -> Union[pd.DataFrame, None]: - try: - return HDF5Manager.load_data(self.trajectory, self._path) - except Exception: - return None - - @property - def dataframe(self) -> Union[pd.DataFrame, None]: - """Return the concatenated DataFrame of gravity and trajectory data.""" - # TODO: What to do if grav or traj are None? - try: - grav_data = HDF5Manager.load_data(self.gravity, self._path) - traj_data = HDF5Manager.load_data(self.trajectory, self._path) - return pd.concat([grav_data, traj_data]) - except OSError: - return None - except AttributeError: - return None - - @property - def parent(self): - return self._parent - - @parent.setter - def parent(self, value): - self._parent = value # TODO: Implement align_frames functionality as below diff --git a/tests/conftest.py b/tests/conftest.py index a56f9b9..b1287d6 100644 --- a/tests/conftest.py +++ b/tests/conftest.py @@ -43,8 +43,7 @@ def _factory(name, path, flights=2, dataset=True): seg2 = DataSegment(OID(), get_ts(1501), get_ts(3000), 1, "seg2") if dataset: - dataset1 = DataSet(prj.path.joinpath('hdfstore.hdf5'), grav1, traj1, - [seg1, seg2]) + dataset1 = DataSet(grav1, traj1, [seg1, seg2]) flt1.datasets.append(dataset1) prj.add_child(mtr) diff --git a/tests/test_controllers.py b/tests/test_controllers.py index 9e7183b..05d10bb 100644 --- a/tests/test_controllers.py +++ b/tests/test_controllers.py @@ -86,7 +86,7 @@ def test_flight_controller(project: AirborneProject): flight = Flight('Test-Flt-1') data0 = DataFile('trajectory', datetime(2018, 5, 10), Path('./data0.dat')) data1 = DataFile('gravity', datetime(2018, 5, 15), Path('./data1.dat')) - dataset = DataSet(prj_ctrl.hdf5path, data1, data0) + dataset = DataSet(data1, data0) # dataset.set_active(True) flight.datasets.append(dataset) @@ -109,7 +109,7 @@ def test_flight_controller(project: AirborneProject): assert isinstance(dsc, DataSetController) assert dsc == fc.get_active_dataset() - dataset2 = DataSet(prj_ctrl.hdf5path) + dataset2 = DataSet() dsc2 = fc.add_child(dataset2) assert isinstance(dsc2, DataSetController) @@ -232,7 +232,7 @@ def test_dataset_controller(tmpdir): flt = Flight("TestFlt") grav_file = DataFile('gravity', datetime.now(), Path(tmpdir).joinpath('gravity.dat')) traj_file = DataFile('trajectory', datetime.now(), Path(tmpdir).joinpath('trajectory.txt')) - ds = DataSet(hdf, grav_file, traj_file) + ds = DataSet(grav_file, traj_file) seg0 = DataSegment(OID(), datetime.now().timestamp(), datetime.now().timestamp() + 5000, 0) ds.segments.append(seg0) @@ -370,7 +370,7 @@ def test_dataset_data_api(project: AirborneProject, hdf5file, gravdata, gpsdata) gpsfile = DataFile('trajectory', datetime.now(), Path('tests/sample_trajectory.txt'), column_format='hms') - dataset = DataSet(hdf5file, gravfile, gpsfile) + dataset = DataSet(gravfile, gpsfile) HDF5Manager.save_data(gravdata, gravfile, hdf5file) HDF5Manager.save_data(gpsdata, gpsfile, hdf5file) diff --git a/tests/test_models.py b/tests/test_models.py index 297af29..7baaa93 100644 --- a/tests/test_models.py +++ b/tests/test_models.py @@ -114,7 +114,7 @@ def test_dataset(tmpdir): path = Path(tmpdir).joinpath("test.hdf5") df_grav = DataFile('gravity', datetime.utcnow(), Path('gravity.dat')) df_traj = DataFile('trajectory', datetime.utcnow(), Path('gps.dat')) - dataset = DataSet(path, df_grav, df_traj) + dataset = DataSet(df_grav, df_traj) assert df_grav == dataset.gravity assert df_traj == dataset.trajectory @@ -126,6 +126,6 @@ def test_dataset(tmpdir): HDF5Manager.save_data(frame_traj, df_traj, path) expected_concat: pd.DataFrame = pd.concat([frame_grav, frame_traj]) - assert expected_concat.equals(dataset.dataframe) + # assert expected_concat.equals(dataset.dataframe) From 10722482110fd09f4767a8184c42830b1f78e9ec Mon Sep 17 00:00:00 2001 From: Zachery Brady Date: Thu, 26 Jul 2018 10:04:50 -0600 Subject: [PATCH 160/236] Enhance project serialization and object Reference API Enhance the project encoder/decoder JSON API to support arbitrary references to other project hierarchy objects (other than the previous 'parent' magic attribute). Add Reference class wrapper to wrap project object references, and provide an interface for the ProjectEncoder to encode these references. Add functionality to the ProjecteDecoder to load Reference definitions from JSON and re-link the references to their owners upon de-serialization. Remove 'parent' magic attribute handling from Encoder/Decoders, replaced by Reference objects. Refactor meter and flight models to use the new Reference function for their parent links. --- dgp/core/models/dataset.py | 7 +++ dgp/core/models/flight.py | 9 ++-- dgp/core/models/meter.py | 7 +-- dgp/core/models/project.py | 43 ++++++++++------- dgp/core/types/reference.py | 95 +++++++++++++++++++++++++++++++++++++ tests/test_serialization.py | 64 +++++++++++++++++++++++++ 6 files changed, 200 insertions(+), 25 deletions(-) create mode 100644 dgp/core/types/reference.py diff --git a/dgp/core/models/dataset.py b/dgp/core/models/dataset.py index e3582be..f7817d6 100644 --- a/dgp/core/models/dataset.py +++ b/dgp/core/models/dataset.py @@ -3,6 +3,7 @@ from typing import List from datetime import datetime +from dgp.core.types.reference import Reference from dgp.core.models.datafile import DataFile from dgp.core.oid import OID @@ -71,12 +72,18 @@ def __init__(self, gravity: DataFile = None, trajectory: DataFile = None, self.uid = uid or OID(self) self.uid.set_pointer(self) self.segments = segments or [] + self._sensor = Reference(self, 'sensor', sensor) self.gravity: DataFile = gravity self.trajectory: DataFile = trajectory @property + def sensor(self): + return self._sensor.dereference() + @sensor.setter + def sensor(self, value): + self._sensor.ref = value # TODO: Implement align_frames functionality as below # TODO: Consider the implications of multiple data files diff --git a/dgp/core/models/flight.py b/dgp/core/models/flight.py index 336a109..580e04e 100644 --- a/dgp/core/models/flight.py +++ b/dgp/core/models/flight.py @@ -2,6 +2,7 @@ from datetime import datetime from typing import List, Optional, Union +from dgp.core.types.reference import Reference from dgp.core.models.dataset import DataSet from dgp.core.models.meter import Gravimeter from dgp.core.oid import OID @@ -43,9 +44,9 @@ class Flight: 'duration', '_parent') def __init__(self, name: str, date: Optional[datetime] = None, notes: Optional[str] = None, - sequence: int = 0, duration: int = 0, meter: str = None, + sequence: int = 0, duration: int = 0, uid: Optional[OID] = None, **kwargs): - self._parent = None + self._parent = Reference(self, 'parent') self.uid = uid or OID(self, name) self.uid.set_pointer(self) self.name = name @@ -58,11 +59,11 @@ def __init__(self, name: str, date: Optional[datetime] = None, notes: Optional[s @property def parent(self): - return self._parent + return self._parent.dereference() @parent.setter def parent(self, value): - self._parent = value + self._parent.ref = value def __str__(self) -> str: return self.name diff --git a/dgp/core/models/meter.py b/dgp/core/models/meter.py index 11d5916..aac59d8 100644 --- a/dgp/core/models/meter.py +++ b/dgp/core/models/meter.py @@ -7,6 +7,7 @@ from pathlib import Path from typing import Optional, Union, Dict +from dgp.core.types.reference import Reference from dgp.core.oid import OID @@ -26,7 +27,7 @@ class Gravimeter: def __init__(self, name: str, config: dict = None, uid: Optional[OID] = None, **kwargs): - self._parent = None + self._parent = Reference(self, 'parent') self.uid = uid or OID(self) self.uid.set_pointer(self) self.type = "AT1A" @@ -37,11 +38,11 @@ def __init__(self, name: str, config: dict = None, uid: Optional[OID] = None, ** @property def parent(self): - return self._parent + return self._parent.dereference() @parent.setter def parent(self, value): - self._parent = value + self._parent.ref = value @staticmethod def read_config(path: Path) -> Dict[str, Union[str, int, float]]: diff --git a/dgp/core/models/project.py b/dgp/core/models/project.py index 6162187..391da06 100644 --- a/dgp/core/models/project.py +++ b/dgp/core/models/project.py @@ -12,6 +12,7 @@ from pprint import pprint from typing import Optional, List, Any, Dict, Union +from dgp.core.types.reference import Reference from dgp.core.oid import OID from .flight import Flight from .meter import Gravimeter @@ -56,9 +57,6 @@ def default(self, o: Any): keys = o.__slots__ if hasattr(o, '__slots__') else o.__dict__.keys() attrs = {key.lstrip('_'): getattr(o, key) for key in keys} attrs['_type'] = o.__class__.__name__ - if 'parent' in attrs: - # Serialize the UID of the parent, not the parent itself (circular-reference) - attrs['parent'] = getattr(attrs['parent'], 'uid', None) return attrs j_complex = {'_type': o.__class__.__name__} if isinstance(o, OID): @@ -73,6 +71,8 @@ def default(self, o: Any): if isinstance(o, Path): # Path requires special handling due to OS dependant internal classes return {'_type': 'Path', 'path': str(o.resolve())} + if isinstance(o, Reference): + return o.serialize() return super().default(o) @@ -104,15 +104,17 @@ class ProjectDecoder(json.JSONDecoder): def __init__(self, klass): super().__init__(object_hook=self.object_hook) self._registry = {} - self._child_parent_map = {} + self._references = [] self._klass = klass def decode(self, s, _w=json.decoder.WHITESPACE.match): decoded = super().decode(s) - # Re-link parents & children - for child_uid, parent_uid in self._child_parent_map.items(): + # Re-link References + for ref in self._references: + parent_uid, attr, child_uid = ref + parent = self._registry[parent_uid] child = self._registry[child_uid] - child.parent = self._registry.get(parent_uid, None) + setattr(parent, attr, child) return decoded @@ -136,11 +138,6 @@ def object_hook(self, json_o: dict): return json_o _type = json_o.pop('_type') - if 'parent' in json_o: - parent = json_o.pop('parent') # type: OID - else: - parent = None - params = {key.lstrip('_'): value for key, value in json_o.items()} if _type == OID.__name__: return OID(**params) @@ -150,17 +147,25 @@ def object_hook(self, json_o: dict): return datetime.date.fromordinal(*params.values()) elif _type == Path.__name__: return Path(*params.values()) + elif _type == Reference.__name__: + self._references.append((json_o['parent'], json_o['attr'], json_o['ref'])) + return None else: # Handle project entity types klass = {self._klass.__name__: self._klass, **project_entities}.get(_type, None) if klass is None: # pragma: no cover raise AttributeError(f"Unhandled class {_type} in JSON data. Class is not defined" f" in entity map.") - instance = klass(**params) - if parent is not None: - self._child_parent_map[instance.uid] = parent - self._registry[instance.uid] = instance - return instance + else: + try: + instance = klass(**params) + except TypeError: # pragma: no cover + # This may occur if an outdated project JSON file is loaded + print(f'Exception instantiating class {klass} with params {params}') + raise + else: + self._registry[instance.uid] = instance + return instance class GravityProject: @@ -201,7 +206,7 @@ class GravityProject: :class:`AirborneProject` """ - def __init__(self, name: str, path: Union[Path], description: Optional[str] = None, + def __init__(self, name: str, path: Path, description: Optional[str] = None, create_date: Optional[datetime.datetime] = None, modify_date: Optional[datetime.datetime] = None, uid: Optional[str] = None, **kwargs): @@ -304,6 +309,8 @@ class AirborneProject(GravityProject): def __init__(self, **kwargs): super().__init__(**kwargs) self._flights = kwargs.get('flights', []) + for flight in self._flights: + flight.parent = self @property def flights(self) -> List[Flight]: diff --git a/dgp/core/types/reference.py b/dgp/core/types/reference.py new file mode 100644 index 0000000..30e9645 --- /dev/null +++ b/dgp/core/types/reference.py @@ -0,0 +1,95 @@ +# -*- coding: utf-8 -*- + + +class Reference: + """Reference is a simple wrapper class designed to facilitate object + references within the DGP project models. This is necessary due to the + nature of the project's JSON serialization/de-serialization protocol, as the + JSON standard does not allow cyclical links (where some object makes + reference to another object that has already been encoded). + + Parameters + ---------- + owner : + Owner of this reference, must have a 'uid' attribute and be serializable + by the ProjectEncoder + attr : str + Name of the attribute which holds this reference, this name is used by + setattr during decoding to re-link the de-referenced object. + ref : Optional + Object to which the :class:`Reference` refers, must have a 'uid' + attribute and be serializable by the ProjectEncoder + + Examples + -------- + >>> class Sensor: + >>> def __init__(self, dataset=None): + >>> # Note the attr param refers to the parent property + >>> # In this case the actual variable self._parent is immaterial + >>> self._parent = Reference(self, 'parent', dataset) + >>> # A reference can also be instantiated without a referred object + >>> self.link = Reference(self, 'link') + >>> assert self.link.isnull + >>> + >>> @property + >>> def parent(self): + >>> return self._parent.dereference() + >>> + >>> @parent.setter + >>> def parent(self, value): + >>> self._parent.ref = value + + Note that it is currently necessary to define properties as in the above + example to create the reference when an object is passed, and it is also + useful to define the getter such that it will return the de-referenced + object - making the Reference object effectively transparent to any outside + callers. + + See Also + -------- + + :class:`~dgp.core.models.project.ProjectEncoder` + :class:`~dgp.core.models.project.ProjectDecoder` + + """ + def __init__(self, owner, attr: str, ref=None): + self.owner = owner + self.ref = ref + self.attr = attr + + @property + def isnull(self) -> bool: + """Check if this reference is null (an incomplete reference) + + Returns + ------- + True + If any of owner, ref, or attr are None + False + If owner, ref, and attr are defined + + """ + return not all([x is not None for x in self.__dict__.values()]) + + def dereference(self): + return self.ref + + def serialize(self): + """Generate a JSON serializable representation of this Reference for the + ProjectEncoder. + + Returns + ------- + None if self.isnull + else + Dictionary containing object type, parent, attr, and ref + + """ + if self.isnull: + return None + return { + '_type': self.__class__.__name__, + 'parent': self.owner.uid, + 'attr': self.attr, + 'ref': self.ref.uid + } diff --git a/tests/test_serialization.py b/tests/test_serialization.py index 0f67473..d5fdbfa 100644 --- a/tests/test_serialization.py +++ b/tests/test_serialization.py @@ -8,6 +8,9 @@ import pandas as pd import pytest +from dgp.core.types.reference import Reference +from dgp.core.models.meter import Gravimeter +from dgp.core.models.dataset import DataSet from dgp.core.models.datafile import DataFile from dgp.core.models.flight import Flight from dgp.core.models.project import AirborneProject, ProjectEncoder, ProjectDecoder, PROJECT_FILE_NAME @@ -54,6 +57,7 @@ def test_project_deserialize(project: AirborneProject): flt_names = [flt.name for flt in prj_deserialized.flights] assert flt1.name in flt_names assert flt2.name in flt_names + assert flt1.parent is project f1_reconstructed = prj_deserialized.get_child(flt1.uid) assert flt1.uid in [flt.uid for flt in prj_deserialized.flights] @@ -63,6 +67,7 @@ def test_project_deserialize(project: AirborneProject): assert flt1.uid not in [flt.uid for flt in prj_deserialized.flights] assert f1_reconstructed.name == flt1.name assert f1_reconstructed.uid == flt1.uid + assert f1_reconstructed.parent is prj_deserialized assert flt2.uid in [flt.uid for flt in prj_deserialized.flights] @@ -90,3 +95,62 @@ def test_parent_child_serialization(): assert 1 == len(decoded.flights) flt_ = decoded.flights[0] + + +def test_Reference(): + project = AirborneProject(name='Reference-Test', path=Path('.')) + flt = Flight('Flight-1') + + ref = Reference(flt, 'parent', project) + assert not ref.isnull + expected = { + '_type': Reference.__name__, + 'parent': flt.uid, + 'attr': 'parent', + 'ref': project.uid + } + assert expected == ref.serialize() + + nullref = Reference(flt, 'parent') + assert nullref.isnull + assert nullref.serialize() is None + + +def test_reference_serialization(): + """Project objects should be able to use a Reference wrapper to serialize a + reference to a object higher in the project graph. + The referred object should be set as an attribute on the object when + de-serialization is completed. + + """ + sensor = Gravimeter('AT1A-12') + ds = DataSet(sensor=sensor) + ds_a = DataSet(sensor=sensor) + flt = Flight(name='Flight-1', datasets=[ds, ds_a]) + prj = AirborneProject(name="Reference-Serialization-Test", path=Path('.'), + flights=[flt]) + prj.add_child(sensor) + assert flt.parent is prj + assert sensor == ds.sensor + + serialized0 = prj.to_json(indent=2) + + prj1 = prj.from_json(serialized0) + sensor1 = prj1.gravimeters[0] + flt1 = prj1.flights[0] + ds1 = flt1.datasets[0] + ds2 = flt1.datasets[1] + + assert flt1.parent is prj1 + + assert sensor.name == sensor1.name + assert sensor.uid == sensor1.uid + + assert flt.uid == flt1.uid + assert ds.uid == ds1.uid + + assert ds.sensor.uid == ds1.sensor.uid + assert isinstance(ds1.sensor, Gravimeter) + + assert ds1.sensor is sensor1 + assert ds2.sensor is sensor1 From 5b2096fb230cbbcde19cad5dffe8e742f3f02f21 Mon Sep 17 00:00:00 2001 From: Zachery Brady Date: Thu, 26 Jul 2018 10:28:00 -0600 Subject: [PATCH 161/236] Update project path handling, Flight clone updates. Fix issue with FlightController clones, where clone display values were not updated when a change was made to the original Flight/Controller. Add parameter to AirborneProjectController to allow a project's absolute path reference to be updated when a project is opened from a file. Update IFlightController interface for recent API changes, removing set_active_child method. --- dgp/core/controllers/controller_interfaces.py | 2 +- dgp/core/controllers/dataset_controller.py | 6 +++++ dgp/core/controllers/flight_controller.py | 9 +++++++- dgp/core/controllers/project_controllers.py | 23 +++++++++++++++---- dgp/gui/main.py | 5 ++-- 5 files changed, 36 insertions(+), 9 deletions(-) diff --git a/dgp/core/controllers/controller_interfaces.py b/dgp/core/controllers/controller_interfaces.py index 1e6de96..ebf9669 100644 --- a/dgp/core/controllers/controller_interfaces.py +++ b/dgp/core/controllers/controller_interfaces.py @@ -107,7 +107,7 @@ def get_active_child(self): class IFlightController(IBaseController, IParent, IChild): - def set_active_child(self, child, emit: bool = True): + def get_parent(self) -> IAirborneController: raise NotImplementedError def get_active_dataset(self): diff --git a/dgp/core/controllers/dataset_controller.py b/dgp/core/controllers/dataset_controller.py index e4d4308..a1ef2f4 100644 --- a/dgp/core/controllers/dataset_controller.py +++ b/dgp/core/controllers/dataset_controller.py @@ -82,6 +82,7 @@ def __init__(self, dataset: DataSet, flight: IFlightController, self._menu_bindings = [ # pragma: no cover ('addAction', ('Set Name', lambda: None)), ('addAction', ('Set Active', lambda: None)), + ('addAction', ('Set Sensor', self._set_sensor_dlg)), ('addAction', ('Add Segment', lambda: None)), ('addAction', ('Import Gravity', lambda: self._project.load_file_dlg(DataTypes.GRAVITY))), @@ -248,3 +249,8 @@ def active(self, active: bool) -> None: self.setBackground(QBrush(QColor(ACTIVE_COLOR))) else: self.setBackground(QBrush(QColor(INACTIVE_COLOR))) + + # Context Menu Handlers + def _set_sensor_dlg(self): + + pass diff --git a/dgp/core/controllers/flight_controller.py b/dgp/core/controllers/flight_controller.py index f17400f..f73336f 100644 --- a/dgp/core/controllers/flight_controller.py +++ b/dgp/core/controllers/flight_controller.py @@ -1,6 +1,7 @@ # -*- coding: utf-8 -*- import itertools import logging +from _weakrefset import WeakSet from pathlib import Path from typing import Optional, Union, Any, Generator @@ -89,6 +90,8 @@ def __init__(self, flight: Flight, project: IAirborneController = None): lambda: self._show_properties_dlg())) ] + self._clones = WeakSet() + self.update() @property @@ -128,9 +131,13 @@ def update(self): self.setText(self._flight.name) self.setToolTip(str(self._flight.uid)) super().update() + for clone in self._clones: + clone.update() def clone(self): - return FlightController(self._flight, parent=self.get_parent()) + clone = FlightController(self._flight, project=self.get_parent()) + self._clones.add(clone) + return clone def is_active(self): return self.get_parent().get_active_child() == self diff --git a/dgp/core/controllers/project_controllers.py b/dgp/core/controllers/project_controllers.py index ebed81c..53edfa7 100644 --- a/dgp/core/controllers/project_controllers.py +++ b/dgp/core/controllers/project_controllers.py @@ -43,10 +43,23 @@ class AirborneProjectController(IAirborneController): - def __init__(self, project: AirborneProject): + """Construct an AirborneProjectController around an AirborneProject + + Parameters + ---------- + project : :class:`AirborneProject` + path : :class:`pathlib.Path`, Optional + Optionally supply the directory path where the project was loaded from + in order to update the stored state. + + """ + def __init__(self, project: AirborneProject, path: Path = None): super().__init__(project.name) self.log = logging.getLogger(__name__) self._project = project + if path: + self._project.path = path + self._parent = None self._active = None @@ -63,7 +76,7 @@ def __init__(self, project: AirborneProject): Gravimeter: self.meters} for flight in self.project.flights: - controller = FlightController(flight, parent=self) + controller = FlightController(flight, project=self) self.flights.appendRow(controller) for meter in self.project.gravimeters: @@ -144,7 +157,7 @@ def set_parent_widget(self, value: Union[QObject, QWidget]) -> None: def add_child(self, child: Union[Flight, Gravimeter]) -> Union[FlightController, GravimeterController, None]: if isinstance(child, Flight): - controller = FlightController(child, parent=self) + controller = FlightController(child, project=self) self.flights.appendRow(controller) elif isinstance(child, Gravimeter): controller = GravimeterController(child, parent=self) @@ -245,11 +258,11 @@ def _post_load(self, datafile: DataFile, dataset: IDataSetController, The ingested pandas DataFrame to be dumped to the HDF5 store """ - # TODO: Insert DataFile into appropriate child - # datafile.set_parent(dataset) if HDF5Manager.save_data(data, datafile, path=self.hdf5path): self.log.info("Data imported and saved to HDF5 Store") dataset.add_datafile(datafile) + if self.model() is not None: + self.model().projectMutated.emit() return def load_file_dlg(self, datatype: DataTypes = DataTypes.GRAVITY, diff --git a/dgp/gui/main.py b/dgp/gui/main.py index b7fa9ba..6c2b904 100644 --- a/dgp/gui/main.py +++ b/dgp/gui/main.py @@ -276,7 +276,8 @@ def open_project_dialog(self, *args, path: pathlib.Path=None) -> QFileDialog: """ def _project_selected(directory): - prj_file = get_project_file(pathlib.Path(directory[0])) + prj_dir = pathlib.Path(directory[0]) + prj_file = get_project_file(prj_dir) if prj_file is None: self.log.warning("No valid DGP project file found in directory") return @@ -285,7 +286,7 @@ def _project_selected(directory): if project.uid in [p.uid for p in self.model.projects]: self.log.warning("Project is already opened") else: - control = AirborneProjectController(project) + control = AirborneProjectController(project, path=prj_dir) control.set_parent_widget(self) self.model.add_project(control) self.save_projects() From 1fa41533c25da18d69347202b3894eeae5caa07f Mon Sep 17 00:00:00 2001 From: Zachery Brady Date: Thu, 26 Jul 2018 10:37:39 -0600 Subject: [PATCH 162/236] Update TransformTab to use new DataSet/Controller API Update data check in TransformTab to check for empty DataFrames before computing transformation graph. --- dgp/gui/workspaces/PlotTab.py | 1 - dgp/gui/workspaces/TransformTab.py | 12 ++++++------ tests/test_workspaces.py | 4 ++-- 3 files changed, 8 insertions(+), 9 deletions(-) diff --git a/dgp/gui/workspaces/PlotTab.py b/dgp/gui/workspaces/PlotTab.py index d761269..a12f3d1 100644 --- a/dgp/gui/workspaces/PlotTab.py +++ b/dgp/gui/workspaces/PlotTab.py @@ -63,7 +63,6 @@ def _setup_ui(self): qvbl_plot_layout.addLayout(qhbl_top_buttons) channel_widget = ChannelSelectWidget(self._dataset.series_model) - self.log.debug(f'Dataset is {self._dataset!s} with {self._dataset.series_model.rowCount()} rows') channel_widget.channel_added.connect(self._channel_added) channel_widget.channel_removed.connect(self._channel_removed) channel_widget.channels_cleared.connect(self._clear_plot) diff --git a/dgp/gui/workspaces/TransformTab.py b/dgp/gui/workspaces/TransformTab.py index 9e69407..b3a0c58 100644 --- a/dgp/gui/workspaces/TransformTab.py +++ b/dgp/gui/workspaces/TransformTab.py @@ -8,7 +8,7 @@ from PyQt5.QtGui import QStandardItemModel, QStandardItem from PyQt5.QtWidgets import QVBoxLayout, QWidget, QComboBox -from dgp.core.controllers.dataset_controller import DataSegmentController +from dgp.core.controllers.dataset_controller import DataSegmentController, DataSetController from dgp.core.controllers.flight_controller import FlightController from dgp.lib.transform.transform_graphs import SyncGravity, AirbornePost, TransformGraph from dgp.gui.plotting.plotters import TransformPlot @@ -29,7 +29,7 @@ def __init__(self, flight: FlightController): self.setupUi(self) self.log = logging.getLogger(__name__) self._flight = flight - self._dataset = flight.get_active_dataset() + self._dataset: DataSetController = flight.get_active_dataset() self._plot = TransformPlot(rows=1) self._result: pd.DataFrame = None @@ -80,15 +80,15 @@ def __init__(self, flight: FlightController): self.hlayout.addWidget(self._plot.widget, Qt.AlignLeft | Qt.AlignTop) @property - def raw_gravity(self): + def raw_gravity(self) -> pd.DataFrame: return self._dataset.gravity @property - def raw_trajectory(self): + def raw_trajectory(self) -> pd.DataFrame: return self._dataset.trajectory @property - def dataframe(self) -> Union[pd.DataFrame, None]: + def dataframe(self) -> pd.DataFrame: return self._dataset.dataframe() @property @@ -221,7 +221,7 @@ def _on_result(self): def execute_transform(self): gravity = self.raw_gravity trajectory = self.raw_trajectory - if gravity is None or trajectory is None: + if gravity.empty or trajectory.empty: self.log.warning("Missing trajectory or gravity") return diff --git a/tests/test_workspaces.py b/tests/test_workspaces.py index 2fd60fa..7a8b487 100644 --- a/tests/test_workspaces.py +++ b/tests/test_workspaces.py @@ -3,6 +3,7 @@ # Tests for gui workspace widgets in gui/workspaces import pytest +import pandas as pd from dgp.core.controllers.dataset_controller import DataSetController from dgp.core.models.project import AirborneProject @@ -17,7 +18,6 @@ def test_plot_tab_init(project: AirborneProject): ds_ctrl = flt1_ctrl.get_child(flt1_ctrl.datamodel.datasets[0].uid) assert isinstance(ds_ctrl, DataSetController) assert ds_ctrl == flt1_ctrl.get_active_dataset() - assert ds_ctrl.dataframe() is None + assert pd.DataFrame().equals(ds_ctrl.dataframe()) tab = PlotTab("TestTab", flt1_ctrl) - From 8ebefd5e4ea564d821ed392de2ddd36e618acb14 Mon Sep 17 00:00:00 2001 From: Zachery Brady Date: Tue, 31 Jul 2018 12:46:31 -0600 Subject: [PATCH 163/236] Provide interface to base widget for dialogs. Add interface property (parent_widget) which returns the parent QWidget of the project model. This is used when creating dialogs or other child GUI objects to ensure that they display with the application Icon/style if none is specified, and so that any non-modal dialogs are destroyed when the application closes. This replaces the messy implementation previously which required the application to explicitly set the parent_widget attribtue via method call when a new project was added. The ProjectTreeModel provides this attribute as long as the model is instantiated with the parent specified. --- dgp/core/controllers/controller_interfaces.py | 7 ++++++ dgp/core/controllers/dataset_controller.py | 7 ++++++ dgp/core/controllers/flight_controller.py | 10 ++++---- dgp/core/controllers/gravimeter_controller.py | 5 ++-- dgp/core/controllers/project_controllers.py | 24 ++++++++----------- dgp/gui/main.py | 6 +---- 6 files changed, 34 insertions(+), 25 deletions(-) diff --git a/dgp/core/controllers/controller_interfaces.py b/dgp/core/controllers/controller_interfaces.py index ebf9669..72d0a4a 100644 --- a/dgp/core/controllers/controller_interfaces.py +++ b/dgp/core/controllers/controller_interfaces.py @@ -70,6 +70,13 @@ def uid(self) -> OID: """ raise NotImplementedError + @property + def parent_widget(self) -> Union[QWidget, None]: + try: + return self.model().parent() + except AttributeError: + return None + class IAirborneController(IBaseController, IParent): def add_flight(self): diff --git a/dgp/core/controllers/dataset_controller.py b/dgp/core/controllers/dataset_controller.py index a1ef2f4..b8fc6a1 100644 --- a/dgp/core/controllers/dataset_controller.py +++ b/dgp/core/controllers/dataset_controller.py @@ -251,6 +251,13 @@ def active(self, active: bool) -> None: self.setBackground(QBrush(QColor(INACTIVE_COLOR))) # Context Menu Handlers + def _set_name(self): + name = controller_helpers.get_input("Set DataSet Name", "Enter a new name:", + self.get_attr('name'), + parent=self.parent_widget) + if name: + self.set_attr('name', name) + def _set_sensor_dlg(self): pass diff --git a/dgp/core/controllers/flight_controller.py b/dgp/core/controllers/flight_controller.py index f73336f..fed9014 100644 --- a/dgp/core/controllers/flight_controller.py +++ b/dgp/core/controllers/flight_controller.py @@ -217,7 +217,7 @@ def remove_child(self, uid: Union[OID, str], confirm: bool = True) -> bool: if confirm: # pragma: no cover if not helpers.confirm_action("Confirm Deletion", f'Are you sure you want to delete {child!r}', - self.get_parent().get_parent()): + self.parent_widget): return False if self._active_dataset == child: @@ -242,9 +242,10 @@ def _activate_self(self): def _delete_self(self, confirm: bool = True): self.get_parent().remove_child(self.uid, confirm) - def _set_name(self, parent: QWidget = None): # pragma: no cover + def _set_name(self): # pragma: no cover name = helpers.get_input("Set Name", "Enter a new name:", - self.get_attr('name'), parent) + self.get_attr('name'), + parent=self.parent_widget) if name: self.set_attr('name', name) @@ -252,7 +253,8 @@ def _load_file_dialog(self, datatype: DataTypes): # pragma: no cover self.get_parent().load_file_dlg(datatype, flight=self) def _show_properties_dlg(self): # pragma: no cover - AddFlightDialog.from_existing(self, self.get_parent()).exec_() + AddFlightDialog.from_existing(self, self.get_parent(), + parent=self.parent_widget).exec_() def __hash__(self): return hash(self._flight.uid) diff --git a/dgp/core/controllers/gravimeter_controller.py b/dgp/core/controllers/gravimeter_controller.py index 81bdac5..9c67d02 100644 --- a/dgp/core/controllers/gravimeter_controller.py +++ b/dgp/core/controllers/gravimeter_controller.py @@ -19,7 +19,7 @@ def __init__(self, meter: Gravimeter, parent: IAirborneController = None): self._bindings = [ ('addAction', ('Delete <%s>' % self._meter.name, - (lambda: self.get_parent().remove_child(self._meter, self.row(), True)))), + (lambda: self.get_parent().remove_child(self.uid, True)))), ('addAction', ('Rename', self.set_name_dlg)) ] @@ -45,7 +45,8 @@ def update(self): self.setData(self._meter.name, Qt.DisplayRole) def set_name_dlg(self): # pragma: no cover - name = get_input("Set Name", "Enter a new name:", self._meter.name) + name = get_input("Set Name", "Enter a new name:", self._meter.name, + self.parent_widget) if name: self.set_attr('name', name) diff --git a/dgp/core/controllers/project_controllers.py b/dgp/core/controllers/project_controllers.py index 53edfa7..f368e51 100644 --- a/dgp/core/controllers/project_controllers.py +++ b/dgp/core/controllers/project_controllers.py @@ -149,12 +149,6 @@ def meter_model(self) -> QStandardItemModel: def flight_model(self) -> QStandardItemModel: return self.flights.internal_model - def get_parent_widget(self) -> Union[QObject, QWidget, None]: - return self._parent - - def set_parent_widget(self, value: Union[QObject, QWidget]) -> None: - self._parent = value - def add_child(self, child: Union[Flight, Gravimeter]) -> Union[FlightController, GravimeterController, None]: if isinstance(child, Flight): controller = FlightController(child, project=self) @@ -177,12 +171,13 @@ def remove_child(self, uid: Union[OID, str], confirm: bool = True): if confirm: # pragma: no cover if not confirm_action("Confirm Deletion", "Are you sure you want to delete {!s}" - .format(child.get_attr('name'))): + .format(child.get_attr('name')), + parent=self.parent_widget): return if isinstance(child, IFlightController) and self.model() is not None: self.model().close_flight(child) self.project.remove_child(child.uid) - self._child_map[type(child.datamodel)].removeRow(child.row()) + self._child_map[child.datamodel.__class__].removeRow(child.row()) self.update() def get_child(self, uid: Union[str, OID]) -> Union[FlightController, GravimeterController, None]: @@ -208,7 +203,8 @@ def save(self, to_file=True): return self.project.to_json(indent=2, to_file=to_file) def set_name(self): # pragma: no cover - new_name = get_input("Set Project Name", "Enter a Project Name", self.project.name) + new_name = get_input("Set Project Name", "Enter a Project Name", + self.project.name, parent=self.parent_widget) if new_name: self.set_attr('name', new_name) @@ -229,12 +225,12 @@ def show_in_explorer(self): # pragma: no cover # TODO: What to do about these dialog methods - it feels wrong here def add_flight(self): # pragma: no cover - dlg = AddFlightDialog(project=self, parent=self.get_parent_widget()) + dlg = AddFlightDialog(project=self, parent=self.parent_widget) return dlg.exec_() def add_gravimeter(self): # pragma: no cover """Launch a Dialog to import a Gravimeter configuration""" - dlg = AddGravimeterDialog(self, parent=self.get_parent_widget()) + dlg = AddGravimeterDialog(self, parent=self.parent_widget) return dlg.exec_() def update(self): # pragma: no cover @@ -297,20 +293,20 @@ def load_data(datafile: DataFile, params: dict, parent: IDataSetController): progress_event = ProgressEvent(self.uid, f"Loading {datafile.group}", stop=0) self.model().progressNotificationRequested.emit(progress_event) loader = FileLoader(datafile.source_path, method, - parent=self.get_parent_widget(), **params) + parent=self.parent_widget, **params) loader.loaded.connect(functools.partial(self._post_load, datafile, parent)) loader.finished.connect(lambda: self.model().progressNotificationRequested.emit(progress_event)) loader.start() - dlg = DataImportDialog(self, datatype, parent=self.get_parent_widget()) + dlg = DataImportDialog(self, datatype, parent=self.parent_widget) if flight is not None: dlg.set_initial_flight(flight) dlg.load.connect(load_data) dlg.exec_() def properties_dlg(self): # pragma: no cover - dlg = ProjectPropertiesDialog(self) + dlg = ProjectPropertiesDialog(self, parent=self.parent_widget) dlg.exec_() def _close_project(self): diff --git a/dgp/gui/main.py b/dgp/gui/main.py index 6c2b904..43a86c7 100644 --- a/dgp/gui/main.py +++ b/dgp/gui/main.py @@ -44,11 +44,8 @@ def __init__(self, project: AirborneProjectController, *args): self.log.addHandler(sb_handler) self.log.setLevel(logging.DEBUG) - # Setup Project - project.set_parent_widget(self) - # Instantiate the Project Model and display in the ProjectTreeView - self.model = ProjectTreeModel(project) + self.model = ProjectTreeModel(project, parent=self) self.project_tree.setModel(self.model) self.project_tree.expandAll() @@ -287,7 +284,6 @@ def _project_selected(directory): self.log.warning("Project is already opened") else: control = AirborneProjectController(project, path=prj_dir) - control.set_parent_widget(self) self.model.add_project(control) self.save_projects() From 22d07fc9c36831a7b3a185db81c3cb6e05b102d2 Mon Sep 17 00:00:00 2001 From: Zachery Brady Date: Wed, 1 Aug 2018 09:35:22 -0600 Subject: [PATCH 164/236] Update parent/child interfaces. Update and clean-up the IParent/IChild interfaces, making the interfaces more generally applicable to any controller object which is nested/has nested controllers. Controllers can define whether they can be activated, and the interface allows for interaction via GUI input, or programatically. The ProjectTreeModel is a special case of a Parent object, it conforms loosely to the spec for IParent, but with different names due to naming conflicts. --- dgp/core/controllers/controller_interfaces.py | 170 +++++++++++++++--- dgp/core/controllers/dataset_controller.py | 42 +++-- dgp/core/controllers/flight_controller.py | 64 ++++--- dgp/core/controllers/project_controllers.py | 90 +++++++--- dgp/core/controllers/project_treemodel.py | 113 +++++++----- dgp/gui/dialogs/add_flight_dialog.py | 2 +- dgp/gui/dialogs/data_import_dialog.py | 8 +- dgp/gui/views/ProjectTreeView.py | 6 +- dgp/gui/workspaces/PlotTab.py | 2 +- dgp/gui/workspaces/TransformTab.py | 2 +- tests/test_controllers.py | 112 ++++++++---- tests/test_gui_main.py | 8 +- tests/test_project_treemodel.py | 10 +- tests/test_workspaces.py | 2 +- 14 files changed, 435 insertions(+), 196 deletions(-) diff --git a/dgp/core/controllers/controller_interfaces.py b/dgp/core/controllers/controller_interfaces.py index 72d0a4a..dc70aa2 100644 --- a/dgp/core/controllers/controller_interfaces.py +++ b/dgp/core/controllers/controller_interfaces.py @@ -1,8 +1,9 @@ # -*- coding: utf-8 -*- from pathlib import Path -from typing import Any, Union, Optional +from typing import Union, Generator from PyQt5.QtGui import QStandardItem, QStandardItemModel +from PyQt5.QtWidgets import QWidget from dgp.core.controllers.controller_mixins import AttributeProxy from dgp.core.oid import OID @@ -20,16 +21,88 @@ """ -class IChild: - def get_parent(self): +class DGPObject: + @property + def uid(self) -> OID: + """Returns the unique Object IDentifier of the object + + Returns + ------- + :class:`~dgp.core.oid.OID` + Unique Object Identifier of the object. + + """ + raise NotImplementedError + + +class IChild(DGPObject): + """A class sub-classing IChild can be a child object of a class which is an + :class:`IParent`. + + The IChild interface defines properties to determine if the child can be + activated, and if it is currently activated. + Methods are defined so that the child may retrieve or set a reference to its + parent object. + The set_active method is provided for the Parent object to notify the child + of an activation state change and to update its visual state. + + """ + def get_parent(self) -> 'IParent': raise NotImplementedError def set_parent(self, parent) -> None: raise NotImplementedError + @property + def can_activate(self) -> bool: + return False + + @property + def is_active(self) -> bool: + if not self.can_activate: + return False + raise NotImplementedError + + def set_active(self, state: bool) -> None: + """Called to visually set the child to the active state. + + If a child needs to activate itself it should call activate_child on its + parent object, this ensures that siblings can be deactivated if the + child should be exclusively active. + + Parameters + ---------- + state : bool + Set the objects active state to the boolean state + + """ + if not self.can_activate: + return + raise NotImplementedError + + +# TODO: Rename to AbstractParent +class IParent(DGPObject): + """A class sub-classing IParent provides the ability to add/get/remove + :class:`IChild` objects, as well as a method to iterate through children. + + Child objects may be activated by the parent if child.can_activate is True. + Parent objects should call set_active on children to update their internal + active state, and to allow children to perform any necessary visual updates. + + """ + @property + def children(self) -> Generator[IChild, None, None]: + """Return a generator of IChild objects specific to the parent. + + Returns + ------- + Generator[IChild, None, None] + + """ + raise NotImplementedError -class IParent: - def add_child(self, child) -> 'IBaseController': + def add_child(self, child) -> 'IChild': """Add a child object to the controller, and its underlying data object. @@ -54,22 +127,65 @@ def remove_child(self, child, confirm: bool = True) -> None: raise NotImplementedError def get_child(self, uid: Union[str, OID]) -> IChild: - raise NotImplementedError + """Get a child of this object by matching OID + Parameters + ---------- + uid : :class:`~dgp.core.oid.OID` + Unique identifier of the child to get -class IBaseController(QStandardItem, AttributeProxy): - @property - def uid(self) -> OID: - """Return the Object IDentifier of the underlying - model object + Returns + ------- + IChild or None + Returns the child object referred to by uid if it exists + else None + + """ + for child in self.children: + if uid == child.uid: + return child + + def activate_child(self, uid: OID, exclusive: bool = True, + emit: bool = False) -> Union[IChild, None]: + """Activate a child referenced by the given OID, and return a reference + to the activated child. + Children may be exclusively activated (default behavior), in which case + all other children of the parent will be set to inactive. + + Parameters + ---------- + uid : :class:`~dgp.core.oid.OID` + exclusive : bool, Optional + If exclusive is True, all other children will be deactivated + emit : bool, Optional Returns ------- - :obj:`~dgp.core.oid.OID` - The OID of the underlying data model object + :class:`IChild` + The child object that was activated + """ - raise NotImplementedError + child = self.get_child(uid) + try: + child.set_active(True) + if exclusive: + for other in [c for c in self.children if c.uid != uid]: + other.set_active(False) + except AttributeError: + return None + else: + return child + @property + def active_child(self) -> Union[IChild, None]: + """Returns the first active child object, or None if no children are + active. + + """ + return next((child for child in self.children if child.is_active), None) + + +class IBaseController(QStandardItem, AttributeProxy, DGPObject): @property def parent_widget(self) -> Union[QWidget, None]: try: @@ -78,11 +194,11 @@ def parent_widget(self) -> Union[QWidget, None]: return None -class IAirborneController(IBaseController, IParent): - def add_flight(self): +class IAirborneController(IBaseController, IParent, IChild): + def add_flight_dlg(self): raise NotImplementedError - def add_gravimeter(self): + def add_gravimeter_dlg(self): raise NotImplementedError def load_file_dlg(self, datatype: DataTypes, @@ -106,19 +222,15 @@ def flight_model(self) -> QStandardItemModel: def meter_model(self) -> QStandardItemModel: raise NotImplementedError - def set_active_child(self, child, emit: bool = True): - raise NotImplementedError - - def get_active_child(self): - raise NotImplementedError + @property + def can_activate(self): + return True class IFlightController(IBaseController, IParent, IChild): - def get_parent(self) -> IAirborneController: - raise NotImplementedError - - def get_active_dataset(self): - raise NotImplementedError + @property + def can_activate(self): + return True @property def project(self) -> IAirborneController: @@ -130,6 +242,10 @@ class IMeterController(IBaseController, IChild): class IDataSetController(IBaseController, IChild): + @property + def can_activate(self): + return True + def add_datafile(self, datafile) -> None: """ Add a :obj:`DataFile` to the :obj:`DataSetController`, potentially diff --git a/dgp/core/controllers/dataset_controller.py b/dgp/core/controllers/dataset_controller.py index b8fc6a1..16870bd 100644 --- a/dgp/core/controllers/dataset_controller.py +++ b/dgp/core/controllers/dataset_controller.py @@ -80,15 +80,18 @@ def __init__(self, dataset: DataSet, flight: IFlightController, self._channel_model = QStandardItemModel() self._menu_bindings = [ # pragma: no cover - ('addAction', ('Set Name', lambda: None)), - ('addAction', ('Set Active', lambda: None)), - ('addAction', ('Set Sensor', self._set_sensor_dlg)), - ('addAction', ('Add Segment', lambda: None)), - ('addAction', ('Import Gravity', - lambda: self._project.load_file_dlg(DataTypes.GRAVITY))), - ('addAction', ('Import Trajectory', - lambda: self._project.load_file_dlg(DataTypes.TRAJECTORY))), - ('addAction', ('Delete', lambda: None)), + ('addAction', ('Set Name', self._set_name)), + ('addAction', ('Set Active', lambda: self.get_parent().activate_child(self.uid))), + ('addAction', (QIcon(':/icons/meter_config.png'), 'Set Sensor', + self._set_sensor_dlg)), + ('addSeparator', ()), + ('addAction', (QIcon(':/icons/gravity'), 'Import Gravity', + lambda: self._project.load_file_dlg(DataTypes.GRAVITY, dataset=self))), + ('addAction', (QIcon(':/icons/gps'), 'Import Trajectory', + lambda: self._project.load_file_dlg(DataTypes.TRAJECTORY, dataset=self))), + ('addAction', ('Align Data', self.align)), + ('addSeparator', ()), + ('addAction', ('Delete', lambda: self.get_parent().remove_child(self.uid))), ('addAction', ('Properties', lambda: None)) ] @@ -238,17 +241,20 @@ def remove_segment(self, uid: OID): self._segments.removeRow(segment.row()) self._dataset.segments.remove(segment.datamodel) - @property - def active(self) -> bool: - return self._active + def update(self): + self.setText(self._dataset.name) + super().update() - @active.setter - def active(self, active: bool) -> None: - self._active = active - if active: - self.setBackground(QBrush(QColor(ACTIVE_COLOR))) + def set_active(self, state: bool): + self._active = bool(state) + if self._active: + self.setBackground(QColor(StateColor.ACTIVE.value)) else: - self.setBackground(QBrush(QColor(INACTIVE_COLOR))) + self.setBackground(QColor(StateColor.INACTIVE.value)) + + @property + def is_active(self) -> bool: + return self._active # Context Menu Handlers def _set_name(self): diff --git a/dgp/core/controllers/flight_controller.py b/dgp/core/controllers/flight_controller.py index fed9014..dfb3142 100644 --- a/dgp/core/controllers/flight_controller.py +++ b/dgp/core/controllers/flight_controller.py @@ -21,8 +21,6 @@ from dgp.gui.dialogs.add_flight_dialog import AddFlightDialog from . import controller_helpers as helpers -FOLDER_ICON = ":/icons/folder_open.png" - class FlightController(IFlightController): """ @@ -58,10 +56,10 @@ def __init__(self, flight: Flight, project: IAirborneController = None): self.log = logging.getLogger(__name__) self._flight = flight self._parent = project + self._active: bool = False self.setData(flight, Qt.UserRole) self.setEditable(False) - self._active_dataset: DataSetController = None self._dataset_model = QStandardItemModel() for dataset in self._flight.datasets: @@ -75,7 +73,7 @@ def __init__(self, flight: Flight, project: IAirborneController = None): # TODO: Consider adding MenuPrototype class which could provide the means to build QMenu self._bindings = [ # pragma: no cover - ('addAction', ('Add Dataset', lambda: None)), + ('addAction', ('Add Dataset', self._add_dataset)), ('addAction', ('Set Active', lambda: self._activate_self())), ('addAction', ('Import Gravity', @@ -98,6 +96,11 @@ def __init__(self, flight: Flight, project: IAirborneController = None): def uid(self) -> OID: return self._flight.uid + @property + def children(self): + for i in range(self.rowCount()): + yield self.child(i, 0) + @property def menu_bindings(self): # pragma: no cover """ @@ -139,22 +142,31 @@ def clone(self): self._clones.add(clone) return clone + @property def is_active(self): - return self.get_parent().get_active_child() == self - - # TODO: This is not fully implemented - def set_active_dataset(self, dataset: DataSetController): - if not isinstance(dataset, DataSetController): - raise TypeError(f'Cannot set {dataset!r} to active (invalid type)') - dataset.active = True - self._active_dataset = dataset - - def get_active_dataset(self) -> DataSetController: - if self._active_dataset is None: - for i in range(self.rowCount()): - self._active_dataset = self.child(i, 0) - break - return self._active_dataset + return self._active + + def set_active(self, state: bool): + self._active = bool(state) + if self._active: + self.setBackground(QColor('green')) + else: + self.setBackground(QColor('white')) + + @property + def active_child(self) -> DataSetController: + """active_child overrides method in IParent + + If no child is active, try to activate the first child (row 0) and + return the newly active child. + If the flight has no children None will be returned + + """ + child = super().active_child + if child is None and self.rowCount(): + self.activate_child(self.child(0).uid) + return self.active_child + return child def add_child(self, child: DataSet) -> DataSetController: """Adds a child to the underlying Flight, and to the model representation @@ -220,24 +232,20 @@ def remove_child(self, uid: Union[OID, str], confirm: bool = True) -> bool: self.parent_widget): return False - if self._active_dataset == child: - self._active_dataset = None self._flight.datasets.remove(child.datamodel) self._dataset_model.removeRow(child.row()) self.removeRow(child.row()) return True def get_child(self, uid: Union[OID, str]) -> DataSetController: - """Retrieve a child controller by UID - A string base_uuid can be passed, or an :obj:`OID` object for comparison - """ - for item in (self.child(i, 0) for i in range(self.rowCount())): # type: DataSetController - if item.uid == uid: - return item + return super().get_child(uid) # Menu Action Handlers def _activate_self(self): - self.get_parent().set_active_child(self) + self.get_parent().activate_child(self.uid, emit=True) + + def _add_dataset(self): + self.add_child(DataSet(name=f'DataSet-{self.datasets.rowCount()}')) def _delete_self(self, confirm: bool = True): self.get_parent().remove_child(self.uid, confirm) diff --git a/dgp/core/controllers/project_controllers.py b/dgp/core/controllers/project_controllers.py index f368e51..2f3ec27 100644 --- a/dgp/core/controllers/project_controllers.py +++ b/dgp/core/controllers/project_controllers.py @@ -4,6 +4,7 @@ import logging import shlex import sys +import warnings from pathlib import Path from pprint import pprint from typing import Union, List @@ -13,6 +14,7 @@ from PyQt5.QtWidgets import QWidget from pandas import DataFrame +from .project_treemodel import ProjectTreeModel from dgp.core.file_loader import FileLoader from dgp.core.oid import OID from dgp.core.controllers.controller_interfaces import (IAirborneController, IFlightController, IParent, @@ -112,6 +114,11 @@ def writeable(self, key: str): # pragma: no cover return self._fields[key][0] return True + @property + def children(self) -> Generator[IFlightController, None, None]: + for child in itertools.chain(self.flights.items(), self.meters.items()): + yield child + @property def fields(self) -> List[str]: """Return list of public attribute keys (for UI display)""" @@ -174,30 +181,48 @@ def remove_child(self, uid: Union[OID, str], confirm: bool = True): .format(child.get_attr('name')), parent=self.parent_widget): return - if isinstance(child, IFlightController) and self.model() is not None: - self.model().close_flight(child) + if isinstance(child, IFlightController): + try: + self.get_parent().close_flight(child) + except AttributeError: + pass + self.project.remove_child(child.uid) self._child_map[child.datamodel.__class__].removeRow(child.row()) self.update() - def get_child(self, uid: Union[str, OID]) -> Union[FlightController, GravimeterController, None]: - for child in itertools.chain(self.flights.items(), self.meters.items()): - if child.uid == uid: - return child + def get_parent(self) -> ProjectTreeModel: + return self.model() - def get_active_child(self): - return self._active + def get_child(self, uid: Union[str, OID]) -> IFlightController: + return super().get_child(uid) - def set_active_child(self, child: IFlightController, emit: bool = True): - if isinstance(child, IFlightController): - self._active = child - for ctrl in self.flights.items(): # type: QStandardItem - ctrl.setBackground(BASE_COLOR) - child.setBackground(ACTIVE_COLOR) - if emit and self.model() is not None: # pragma: no cover - self.model().active_changed(child) + @property + def active_child(self) -> IFlightController: + return next((child for child in self.children if child.is_active), None) + + def activate_child(self, uid: OID, exclusive: bool = True, + emit: bool = False): + child: IFlightController = super().activate_child(uid, exclusive, False) + if emit: + try: + self.get_parent().tabOpenRequested.emit(child.uid, child, child.get_attr('name')) + except AttributeError: + warnings.warn(f"project model not set for project " + f"{self.get_attr('name')}") + + return child + + def set_active(self, state: bool): + self._active = bool(state) + if self._active: + self.setBackground(QColor(StateColor.ACTIVE.value)) else: - raise ValueError("Child of type {0!s} cannot be set to active.".format(type(child))) + self.setBackground(QColor(StateColor.INACTIVE.value)) + + @property + def is_active(self): + return self._active def save(self, to_file=True): return self.project.to_json(indent=2, to_file=to_file) @@ -223,12 +248,11 @@ def show_in_explorer(self): # pragma: no cover QProcess.startDetached(script, shlex.split(args)) - # TODO: What to do about these dialog methods - it feels wrong here - def add_flight(self): # pragma: no cover + def add_flight_dlg(self): # pragma: no cover dlg = AddFlightDialog(project=self, parent=self.parent_widget) return dlg.exec_() - def add_gravimeter(self): # pragma: no cover + def add_gravimeter_dlg(self): # pragma: no cover """Launch a Dialog to import a Gravimeter configuration""" dlg = AddGravimeterDialog(self, parent=self.parent_widget) return dlg.exec_() @@ -237,8 +261,11 @@ def update(self): # pragma: no cover """Emit an update event from the parent Model, signalling that data has been added/removed/modified in the project.""" self.setText(self._project.name) - if self.model() is not None: - self.model().projectMutated.emit() + try: + self.get_parent().projectMutated.emit() + except AttributeError: + warnings.warn(f"project model not set for project " + f"{self.get_attr('name')}") def _post_load(self, datafile: DataFile, dataset: IDataSetController, data: DataFrame) -> None: # pragma: no cover @@ -257,9 +284,11 @@ def _post_load(self, datafile: DataFile, dataset: IDataSetController, if HDF5Manager.save_data(data, datafile, path=self.hdf5path): self.log.info("Data imported and saved to HDF5 Store") dataset.add_datafile(datafile) - if self.model() is not None: - self.model().projectMutated.emit() - return + try: + self.get_parent().projectMutated.emit() + except AttributeError: + warnings.warn(f"parent model not set for project " + f"{self.get_attr('name')}") def load_file_dlg(self, datatype: DataTypes = DataTypes.GRAVITY, flight: IFlightController = None, @@ -291,12 +320,12 @@ def load_data(datafile: DataFile, params: dict, parent: IDataSetController): self.log.error("Unrecognized data group: " + datafile.group) return progress_event = ProgressEvent(self.uid, f"Loading {datafile.group}", stop=0) - self.model().progressNotificationRequested.emit(progress_event) + self.get_parent().progressNotificationRequested.emit(progress_event) loader = FileLoader(datafile.source_path, method, parent=self.parent_widget, **params) loader.loaded.connect(functools.partial(self._post_load, datafile, parent)) - loader.finished.connect(lambda: self.model().progressNotificationRequested.emit(progress_event)) + loader.finished.connect(lambda: self.get_parent().progressNotificationRequested.emit(progress_event)) loader.start() dlg = DataImportDialog(self, datatype, parent=self.parent_widget) @@ -310,5 +339,8 @@ def properties_dlg(self): # pragma: no cover dlg.exec_() def _close_project(self): - if self.model() is not None: - self.model().close_project(self) + try: + self.get_parent().remove_project(self) + except AttributeError: + warnings.warn(f"unable to close project, parent model is not set" + f"for project {self.get_attr('name')}") diff --git a/dgp/core/controllers/project_treemodel.py b/dgp/core/controllers/project_treemodel.py index 981b524..63de0f5 100644 --- a/dgp/core/controllers/project_treemodel.py +++ b/dgp/core/controllers/project_treemodel.py @@ -1,14 +1,16 @@ # -*- coding: utf-8 -*- import logging -from typing import Optional, Generator +from typing import Optional, Generator, Union from PyQt5.QtCore import QObject, QModelIndex, pyqtSignal, QSortFilterProxyModel, Qt -from PyQt5.QtGui import QStandardItemModel, QColor +from PyQt5.QtGui import QStandardItemModel from dgp.core.types.enumerations import DataTypes from dgp.core.oid import OID -from dgp.core.controllers.controller_interfaces import IFlightController, IAirborneController -from dgp.core.controllers.project_controllers import AirborneProjectController +from dgp.core.controllers.controller_interfaces import (IFlightController, + IAirborneController, + IDataSetController) +from dgp.core.controllers.controller_helpers import confirm_action from dgp.gui.utils import ProgressEvent __all__ = ['ProjectTreeModel'] @@ -22,7 +24,7 @@ class ProjectTreeModel(QStandardItemModel): Parameters ---------- - project : AirborneProjectController + project : IAirborneController parent : QObject, optional Attributes @@ -42,6 +44,17 @@ class ProjectTreeModel(QStandardItemModel): Signal emitted to request a QProgressDialog from the main window. ProgressEvent is passed defining the parameters for the progress bar + Notes + ----- + ProjectTreeModel loosely conforms to the IParent interface, and uses method + names reflecting the projects that it contains as children. + Part of the reason for this naming scheme is the conflict of the 'child' + property defined in IParent with the child() method of QObject (inherited + by QStandardItemModel). + So, although the ProjectTreeModel tries to conform with the overall parent + interface model, the relationship between Projects and the TreeModel is + special. + """ activeProjectChanged = pyqtSignal(str) projectMutated = pyqtSignal() @@ -49,92 +62,106 @@ class ProjectTreeModel(QStandardItemModel): tabCloseRequested = pyqtSignal(OID) progressNotificationRequested = pyqtSignal(ProgressEvent) - def __init__(self, project: AirborneProjectController, parent: Optional[QObject]=None): + def __init__(self, project: IAirborneController, parent: Optional[QObject] = None): super().__init__(parent) self.log = logging.getLogger(__name__) self.appendRow(project) - project.setBackground(QColor('green')) - self._active = project + project.set_active(True) @property - def active_project(self) -> IAirborneController: - if self._active is None: + def active_project(self) -> Union[IAirborneController, None]: + """Return the active project, if no projects are active then activate + and return the next project which is a child of the model. + + Returns + ------- + IAirborneController or None + The first project controller where is_active is True + If no projects exist in the model None will be returned instead + """ + active = next((prj for prj in self.projects if prj.is_active), None) + if active is None: try: - self._active = next(self.projects) - self.active_changed(self._active) + active = next(self.projects) + active.set_active(True) + self.activeProjectChanged.emit(active.get_attr('name')) + return active except StopIteration: - pass - return self._active + return None + else: + return active @property def projects(self) -> Generator[IAirborneController, None, None]: for i in range(self.rowCount()): yield self.item(i, 0) - def active_changed(self, item): - if isinstance(item, IFlightController): - self.tabOpenRequested.emit(item.uid, item, item.get_attr('name')) - elif isinstance(item, IAirborneController): - self._active = item - item.setBackground(QColor('green')) - self.activeProjectChanged.emit(item.get_attr('name')) - - def add_project(self, project: IAirborneController): - self.appendRow(project) + def add_project(self, child: IAirborneController): + self.appendRow(child) + + def remove_project(self, child: IAirborneController, confirm: bool = True) -> None: + if confirm and not confirm_action("Confirm Project Close", + f"Close Project " + f"{child.get_attr('name')}?", + self.parent()): + return + for i in range(child.flight_model.rowCount()): + flt: IFlightController = child.flight_model.item(i, 0) + self.tabCloseRequested.emit(flt.uid) + child.save() + self.removeRow(child.row()) def close_flight(self, flight: IFlightController): self.tabCloseRequested.emit(flight.uid) def notify_tab_changed(self, flight: IFlightController): - flight.get_parent().set_active_child(flight, emit=False) + flight.get_parent().activate_child(flight.uid) def item_selected(self, index: QModelIndex): + """Single-click handler for View events""" pass def item_activated(self, index: QModelIndex): + """Double-click handler for View events""" + item = self.itemFromIndex(index) if isinstance(item, IFlightController): - item.get_parent().set_active_child(item, emit=False) + item.get_parent().activate_child(item.uid) + self.tabOpenRequested.emit(item.uid, item, item.get_attr('name')) elif isinstance(item, IAirborneController): for project in self.projects: - project.setBackground(QColor('white')) - self.active_changed(item) + if project is item: + project.set_active(True) + else: + project.set_active(False) + self.activeProjectChanged.emit(item.get_attr('name')) + elif isinstance(item, IDataSetController): + item.get_parent().activate_child(item.uid) def save_projects(self): for i in range(self.rowCount()): prj: IAirborneController = self.item(i, 0) prj.save() - def close_project(self, project: IAirborneController): - for i in range(project.flight_model.rowCount()): - flt: IFlightController = project.flight_model.item(i, 0) - self.tabCloseRequested.emit(flt.uid) - project.save() - self.removeRow(project.row()) - try: - self._active = next(self.projects) - except StopIteration: - self._active = None - def import_gps(self): # pragma: no cover if self.active_project is None: return self._warn_no_active_project() - self._active.load_file_dlg(DataTypes.TRAJECTORY) + self.active_project.load_file_dlg(DataTypes.TRAJECTORY) def import_gravity(self): # pragma: no cover if self.active_project is None: return self._warn_no_active_project() - self._active.load_file_dlg(DataTypes.GRAVITY) + self.active_project.load_file_dlg(DataTypes.GRAVITY) def add_gravimeter(self): # pragma: no cover if self.active_project is None: return self._warn_no_active_project() - self._active.add_gravimeter() + self.active_project.add_gravimeter_dlg() def add_flight(self): # pragma: no cover if self.active_project is None: return self._warn_no_active_project() - self._active.add_flight() + self.active_project.add_flight_dlg() def _warn_no_active_project(self): self.log.warning("No active projects.") diff --git a/dgp/gui/dialogs/add_flight_dialog.py b/dgp/gui/dialogs/add_flight_dialog.py index 9ef2856..c25e394 100644 --- a/dgp/gui/dialogs/add_flight_dialog.py +++ b/dgp/gui/dialogs/add_flight_dialog.py @@ -22,7 +22,7 @@ def __init__(self, project: IAirborneController, flight: IFlightController = Non self._flight = flight self.cb_gravimeters.setModel(project.meter_model) - self.qpb_add_sensor.clicked.connect(self._project.add_gravimeter) + self.qpb_add_sensor.clicked.connect(self._project.add_gravimeter_dlg) # Configure Form Validation self._name_validator = QRegExpValidator(QRegExp("[A-Za-z]+.{2,20}")) diff --git a/dgp/gui/dialogs/data_import_dialog.py b/dgp/gui/dialogs/data_import_dialog.py index 3e63d0f..61db724 100644 --- a/dgp/gui/dialogs/data_import_dialog.py +++ b/dgp/gui/dialogs/data_import_dialog.py @@ -82,7 +82,7 @@ def __init__(self, project: IAirborneController, self.qcb_gravimeter.currentIndexChanged.connect(self._gravimeter_changed) self._meter_model = self.project.meter_model # type: QStandardItemModel self.qcb_gravimeter.setModel(self._meter_model) - self.qpb_add_sensor.clicked.connect(self.project.add_gravimeter) + self.qpb_add_sensor.clicked.connect(self.project.add_gravimeter_dlg) # if self._meter_model.rowCount() == 0: # print("NO meters available") self.qcb_gravimeter.setCurrentIndex(0) @@ -105,7 +105,7 @@ def __init__(self, project: IAirborneController, self.qle_filepath.textChanged.connect(self._filepath_changed) self.qlw_datatype.currentItemChanged.connect(self._datatype_changed) self.qpb_browse.clicked.connect(self._browse) - self.qpb_add_flight.clicked.connect(self.project.add_flight) + self.qpb_add_flight.clicked.connect(self.project.add_flight_dlg) self.qsw_advanced_properties.setCurrentIndex(self._type_map[datatype]) @@ -250,7 +250,5 @@ def _traj_timeformat_changed(self, index: int): # pragma: no cover @pyqtSlot(int, name='_flight_changed') def _flight_changed(self, row: int): - flt: IFlightController = self.qcb_flight.model().item(row, 0) - self.qcb_dataset.setModel(flt.datasets) - + self.qcb_dataset.setModel(self.flight.datasets) diff --git a/dgp/gui/views/ProjectTreeView.py b/dgp/gui/views/ProjectTreeView.py index 3728f80..b942e88 100644 --- a/dgp/gui/views/ProjectTreeView.py +++ b/dgp/gui/views/ProjectTreeView.py @@ -6,7 +6,7 @@ from PyQt5.QtGui import QContextMenuEvent, QStandardItem from PyQt5.QtWidgets import QTreeView, QMenu -from dgp.core.controllers.controller_interfaces import IFlightController, IAirborneController +from dgp.core.controllers.controller_interfaces import IAirborneController, IChild from dgp.core.controllers.project_treemodel import ProjectTreeModel @@ -81,8 +81,8 @@ def _on_click(self, index: QModelIndex): def _on_double_click(self, index: QModelIndex): """Selectively expand/collapse an item depending on its active state""" item = self.model().itemFromIndex(index) - if isinstance(item, IFlightController): - if item.is_active(): + if isinstance(item, IChild): + if item.is_active: self.setExpanded(index, not self.isExpanded(index)) else: self.setExpanded(index, True) diff --git a/dgp/gui/workspaces/PlotTab.py b/dgp/gui/workspaces/PlotTab.py index a12f3d1..1204427 100644 --- a/dgp/gui/workspaces/PlotTab.py +++ b/dgp/gui/workspaces/PlotTab.py @@ -29,7 +29,7 @@ def __init__(self, label: str, flight: FlightController, **kwargs): # TODO: It may make more sense to associate a DataSet with the plot vs a Flight super().__init__(label, root=flight, **kwargs) self.log = logging.getLogger(__name__) - self._dataset = flight.get_active_dataset() + self._dataset = flight.active_child self.plot: PqtLineSelectPlot = PqtLineSelectPlot(rows=2) self.plot.line_changed.connect(self._on_modified_line) self._setup_ui() diff --git a/dgp/gui/workspaces/TransformTab.py b/dgp/gui/workspaces/TransformTab.py index b3a0c58..51a76fc 100644 --- a/dgp/gui/workspaces/TransformTab.py +++ b/dgp/gui/workspaces/TransformTab.py @@ -29,7 +29,7 @@ def __init__(self, flight: FlightController): self.setupUi(self) self.log = logging.getLogger(__name__) self._flight = flight - self._dataset: DataSetController = flight.get_active_dataset() + self._dataset: DataSetController = flight.active_child self._plot = TransformPlot(rows=1) self._result: pd.DataFrame = None diff --git a/tests/test_controllers.py b/tests/test_controllers.py index 05d10bb..676ead3 100644 --- a/tests/test_controllers.py +++ b/tests/test_controllers.py @@ -18,9 +18,7 @@ from dgp.core.controllers.controller_interfaces import IChild, IMeterController, IParent from dgp.core.controllers.gravimeter_controller import GravimeterController from dgp.core.controllers.dataset_controller import (DataSetController, - DataSegmentController, - ACTIVE_COLOR, - INACTIVE_COLOR) + DataSegmentController) from dgp.core.models.meter import Gravimeter from dgp.core.models.datafile import DataFile from dgp.core.controllers.flight_controller import FlightController @@ -99,15 +97,16 @@ def test_flight_controller(project: AirborneProject): fc = prj_ctrl.add_child(flight) assert hash(fc) assert str(fc) == str(flight) - assert not fc.is_active() - prj_ctrl.set_active_child(fc) - assert fc.is_active() + assert not fc.is_active + prj_ctrl.activate_child(fc.uid) + assert fc.is_active assert flight.uid == fc.uid assert flight.name == fc.data(Qt.DisplayRole) dsc = fc.get_child(dataset.uid) + fc.activate_child(dsc.uid) assert isinstance(dsc, DataSetController) - assert dsc == fc.get_active_dataset() + assert dsc == fc.active_child dataset2 = DataSet() dsc2 = fc.add_child(dataset2) @@ -116,10 +115,8 @@ def test_flight_controller(project: AirborneProject): with pytest.raises(TypeError): fc.add_child({1: "invalid child"}) - with pytest.raises(TypeError): - fc.set_active_dataset("not a child") - fc.set_active_dataset(dsc) - assert dsc == fc.get_active_dataset() + fc.activate_child(dsc.uid) + assert dsc == fc.active_child fc.set_parent(None) @@ -132,7 +129,7 @@ def test_flight_controller(project: AirborneProject): fc.remove_child(dsc.uid, confirm=False) assert 0 == len(fc.datamodel.datasets) - assert fc.get_active_dataset() is None + assert fc.active_child is None def test_FlightController_bindings(project: AirborneProject): @@ -146,10 +143,10 @@ def test_FlightController_bindings(project: AirborneProject): assert 2 == len(binding) assert hasattr(QMenu, binding[0]) - assert prj_ctrl.get_active_child() is None + assert prj_ctrl.active_child is None fc0._activate_self() - assert fc0 == prj_ctrl.get_active_child() - assert fc0.is_active() + assert fc0 == prj_ctrl.active_child + assert fc0.is_active assert fc0 == prj_ctrl.get_child(fc0.uid) fc0._delete_self(confirm=False) @@ -168,9 +165,8 @@ def test_airborne_project_controller(project): project_ctrl = AirborneProjectController(project) assert project == project_ctrl.datamodel assert project_ctrl.path == project.path - - project_ctrl.set_parent_widget(APP) - assert APP == project_ctrl.get_parent_widget() + # Need a model to have a parent + assert project_ctrl.parent_widget is None flight = Flight("Flt1") flight2 = Flight("Flt2") @@ -194,11 +190,11 @@ def test_airborne_project_controller(project): assert isinstance(project_ctrl.meter_model, QStandardItemModel) assert isinstance(project_ctrl.flight_model, QStandardItemModel) - assert project_ctrl.get_active_child() is None - project_ctrl.set_active_child(fc) - assert fc == project_ctrl.get_active_child() - with pytest.raises(ValueError): - project_ctrl.set_active_child(mc) + assert project_ctrl.active_child is None + project_ctrl.activate_child(fc.uid) + assert fc == project_ctrl.active_child + # with pytest.raises(ValueError): + # project_ctrl.activate_child(mc) project_ctrl.add_child(flight2) @@ -241,7 +237,7 @@ def test_dataset_controller(tmpdir): prj_ctrl = AirborneProjectController(prj) fc0 = prj_ctrl.get_child(flt.uid) - dsc = fc0.get_child(ds.uid) + dsc: DataSetController = fc0.get_child(ds.uid) assert 1 == dsc._segments.rowCount() assert isinstance(dsc, DataSetController) @@ -306,14 +302,6 @@ def test_dataset_controller(tmpdir): assert 1 == len(ds.segments) assert 1 == dsc._segments.rowCount() - # Test Active/Inactive setting and visual effects - assert not dsc.active - assert INACTIVE_COLOR == dsc.background().color().name() - dsc.active = True - assert ACTIVE_COLOR == dsc.background().color().name() - dsc.active = False - assert INACTIVE_COLOR == dsc.background().color().name() - def test_dataset_datafiles(project: AirborneProject): prj_ctrl = AirborneProjectController(project) @@ -377,8 +365,18 @@ def test_dataset_data_api(project: AirborneProject, hdf5file, gravdata, gpsdata) dataset_ctrl = DataSetController(dataset, flt_ctrl) + gravity_frame = HDF5Manager.load_data(gravfile, hdf5file) + assert gravity_frame.equals(dataset_ctrl.gravity) + + trajectory_frame = HDF5Manager.load_data(gpsfile, hdf5file) + assert trajectory_frame.equals(dataset_ctrl.trajectory) + assert dataset_ctrl.dataframe() is not None - expected: DataFrame = pd.concat([gravdata, gpsdata]) + expected: DataFrame = pd.concat([gravdata, gpsdata], axis=1, sort=True) + for col in expected: + pass + # print(f'{col}: {expected[col][3]}') + # print(f'{expected}') expected_cols = [col for col in expected] assert expected.equals(dataset_ctrl.dataframe()) @@ -395,3 +393,51 @@ def test_dataset_data_api(project: AirborneProject, hdf5file, gravdata, gpsdata) assert expected[col].equals(series) + +def test_parent_child_activations(project: AirborneProject): + """Test child/parent interaction of DataSet Controller with + FlightController + """ + prj_ctrl = AirborneProjectController(project) + flt_ctrl = prj_ctrl.get_child(project.flights[0].uid) + flt2 = Flight("Flt-2") + flt2_ctrl = prj_ctrl.add_child(flt2) + + _ds_name = "DataSet-Test" + dataset = DataSet(name=_ds_name) + ds_ctrl = flt_ctrl.add_child(dataset) + + assert prj_ctrl is flt_ctrl.get_parent() + assert flt_ctrl is ds_ctrl.get_parent() + + assert prj_ctrl.can_activate + assert flt_ctrl.can_activate + assert ds_ctrl.can_activate + + assert not prj_ctrl.is_active + assert not flt_ctrl.is_active + + from dgp.core.types.enumerations import StateColor + assert StateColor.INACTIVE.value == prj_ctrl.background().color().name() + assert StateColor.INACTIVE.value == flt_ctrl.background().color().name() + assert StateColor.INACTIVE.value == ds_ctrl.background().color().name() + + prj_ctrl.set_active(True) + assert StateColor.ACTIVE.value == prj_ctrl.background().color().name() + flt_ctrl.set_active(True) + + # Test exclusive/non-exclusive child activation + assert flt_ctrl is prj_ctrl.active_child + prj_ctrl.activate_child(flt2_ctrl.uid, exclusive=False) + assert flt_ctrl.is_active + assert flt2_ctrl.is_active + + prj_ctrl.activate_child(flt2_ctrl.uid, exclusive=True) + assert flt2_ctrl.is_active + assert not flt_ctrl.is_active + + + + + + diff --git a/tests/test_gui_main.py b/tests/test_gui_main.py index a0ec2b1..955c8ea 100644 --- a/tests/test_gui_main.py +++ b/tests/test_gui_main.py @@ -54,12 +54,12 @@ def test_MainWindow_tab_open_requested(flt_ctrl: FlightController, assert isinstance(flt_ctrl, FlightController) assert window.workspace.get_tab(flt_ctrl.uid) is None - window.model.active_changed(flt_ctrl) + window.model.item_activated(flt_ctrl.index()) assert 1 == len(tab_open_spy) assert 1 == window.workspace.count() assert isinstance(window.workspace.currentWidget(), WorkspaceTab) - window.model.active_changed(flt_ctrl) + window.model.item_activated(flt_ctrl.index()) assert 2 == len(tab_open_spy) assert 1 == window.workspace.count() @@ -70,7 +70,7 @@ def test_MainWindow_tab_close_requested(flt_ctrl: AirborneProjectController, assert 0 == len(tab_close_spy) assert 0 == window.workspace.count() - window.model.active_changed(flt_ctrl) + window.model.item_activated(flt_ctrl.index()) assert 1 == window.workspace.count() window.model.close_flight(flt_ctrl) @@ -78,7 +78,7 @@ def test_MainWindow_tab_close_requested(flt_ctrl: AirborneProjectController, assert flt_ctrl.uid == tab_close_spy[0][0] assert window.workspace.get_tab(flt_ctrl.uid) is None - window.model.active_changed(flt_ctrl) + window.model.item_activated(flt_ctrl.index()) assert 1 == window.workspace.count() assert window.workspace.get_tab(flt_ctrl.uid) is not None diff --git a/tests/test_project_treemodel.py b/tests/test_project_treemodel.py index 0b5b681..7c5af0b 100644 --- a/tests/test_project_treemodel.py +++ b/tests/test_project_treemodel.py @@ -1,6 +1,7 @@ # -*- coding: utf-8 -*- from PyQt5.QtTest import QSignalSpy +from dgp.core.oid import OID from dgp.core.models.project import AirborneProject from dgp.core.controllers.flight_controller import FlightController from dgp.core.controllers.project_controllers import AirborneProjectController @@ -37,13 +38,18 @@ def test_ProjectTreeModel_multiple_projects(project: AirborneProject, def test_ProjectTreeModel_item_activated(prj_ctrl: AirborneProjectController, flt_ctrl: FlightController): model = ProjectTreeModel(prj_ctrl) + assert prj_ctrl is model.active_project tabOpen_spy = QSignalSpy(model.tabOpenRequested) fc1_index = model.index(flt_ctrl.row(), 0, parent=model.index(prj_ctrl.flights.row(), 0, parent=model.index(prj_ctrl.row(), 0))) - assert not flt_ctrl.is_active() + assert not flt_ctrl.is_active model.item_activated(fc1_index) - assert flt_ctrl.is_active() + assert flt_ctrl.is_active assert 1 == len(tabOpen_spy) + assert flt_ctrl is prj_ctrl.active_child + + _no_exist_uid = OID() + assert prj_ctrl.activate_child(_no_exist_uid) is None diff --git a/tests/test_workspaces.py b/tests/test_workspaces.py index 7a8b487..1bdf17b 100644 --- a/tests/test_workspaces.py +++ b/tests/test_workspaces.py @@ -17,7 +17,7 @@ def test_plot_tab_init(project: AirborneProject): flt1_ctrl = prj_ctrl.get_child(project.flights[0].uid) ds_ctrl = flt1_ctrl.get_child(flt1_ctrl.datamodel.datasets[0].uid) assert isinstance(ds_ctrl, DataSetController) - assert ds_ctrl == flt1_ctrl.get_active_dataset() + assert ds_ctrl == flt1_ctrl.active_child assert pd.DataFrame().equals(ds_ctrl.dataframe()) tab = PlotTab("TestTab", flt1_ctrl) From 3fb8c848039d10d9d028f39d5913837fe435e0c2 Mon Sep 17 00:00:00 2001 From: Zachery Brady Date: Wed, 1 Aug 2018 09:50:11 -0600 Subject: [PATCH 165/236] Refactor controller display properties. Moved show_in_explorer function out of project controllers into the helpers module, as it may have utility outside of just the project object. Created enumerations in core/types/enumerations for standard state (activation) colors, and an enum to map icon paths from the QResources file. Deleted old depreacted enums from core/types/enumerations. Modified FlightController clone behavior to keep weak-references to its clones, enabling graphical updates (e.g. when the name of the original is changed) --- dgp/core/controllers/controller_helpers.py | 29 ++++++++- dgp/core/controllers/dataset_controller.py | 13 ++--- dgp/core/controllers/flight_controller.py | 27 ++++----- dgp/core/controllers/project_controllers.py | 65 +++++++-------------- dgp/core/models/dataset.py | 4 +- dgp/core/types/enumerations.py | 59 +++++++------------ 6 files changed, 87 insertions(+), 110 deletions(-) diff --git a/dgp/core/controllers/controller_helpers.py b/dgp/core/controllers/controller_helpers.py index c1abfb9..df1bd12 100644 --- a/dgp/core/controllers/controller_helpers.py +++ b/dgp/core/controllers/controller_helpers.py @@ -1,10 +1,13 @@ # -*- coding: utf-8 -*- +import shlex +import sys +from pathlib import Path from typing import Optional, Union -from PyQt5.QtCore import QObject +from PyQt5.QtCore import QObject, QProcess from PyQt5.QtWidgets import QWidget, QMessageBox, QInputDialog -__all__ = ['confirm_action', 'get_input'] +__all__ = ['confirm_action', 'get_input', 'show_in_explorer'] def confirm_action(title: str, message: str, @@ -60,3 +63,25 @@ def get_input(title: str, label: str, text: str = "", parent: QWidget=None): # return False +def show_in_explorer(path: Path): # pragma: no cover + """Reveal the specified path in the OS's explorer/file-browser/finder + + Parameters + ---------- + path : :class:`pathlib.Path` + + ToDo: Linux file explorer handling + """ + dest = path.absolute().resolve() + if sys.platform == 'darwin': + target = 'oascript' + args = f'-e tell application "Finder" -e activate -e select POSIX file ' \ + f'"{dest!s}" -e end tell' + elif sys.platform == 'win32': + target = 'explorer' + args = shlex.quote(f'{dest!s}') + else: + return + + QProcess.startDetached(target, shlex.split(args)) + diff --git a/dgp/core/controllers/dataset_controller.py b/dgp/core/controllers/dataset_controller.py index 16870bd..a98e704 100644 --- a/dgp/core/controllers/dataset_controller.py +++ b/dgp/core/controllers/dataset_controller.py @@ -8,18 +8,17 @@ from dgp.core.hdf5_manager import HDF5Manager from dgp.core.controllers.project_containers import ProjectFolder +from dgp.core.controllers import controller_helpers from dgp.core.models.datafile import DataFile from dgp.core.types.enumerations import DataTypes from dgp.core.oid import OID from dgp.core.controllers.controller_interfaces import (IFlightController, IDataSetController) +from dgp.core.types.enumerations import StateColor from dgp.core.controllers.datafile_controller import DataFileController from dgp.core.controllers.controller_bases import BaseController from dgp.core.models.dataset import DataSet, DataSegment -ACTIVE_COLOR = "#85acea" -INACTIVE_COLOR = "#ffffff" - class DataSegmentController(BaseController): def __init__(self, segment: DataSegment, clone=False): @@ -46,19 +45,17 @@ def clone(self) -> 'DataSegmentController': class DataSetController(IDataSetController): - def __init__(self, dataset: DataSet, flight: IFlightController, - name: str = ""): + def __init__(self, dataset: DataSet, flight: IFlightController): super().__init__() self._dataset = dataset self._flight: IFlightController = flight self._project = self._flight.project - self._name = name self._active = False self.setEditable(False) - self.setText("DataSet") + self.setText(self._dataset.name) self.setIcon(QIcon(":icons/folder_open.png")) - self.setBackground(QBrush(QColor(INACTIVE_COLOR))) + self.setBackground(QBrush(QColor(StateColor.INACTIVE.value))) self._grav_file = DataFileController(self._dataset.gravity, self) self._traj_file = DataFileController(self._dataset.trajectory, self) self._child_map = {'gravity': self._grav_file, diff --git a/dgp/core/controllers/flight_controller.py b/dgp/core/controllers/flight_controller.py index dfb3142..4c2bfa8 100644 --- a/dgp/core/controllers/flight_controller.py +++ b/dgp/core/controllers/flight_controller.py @@ -1,25 +1,19 @@ # -*- coding: utf-8 -*- -import itertools import logging from _weakrefset import WeakSet -from pathlib import Path -from typing import Optional, Union, Any, Generator +from typing import Union from PyQt5.QtCore import Qt -from PyQt5.QtGui import QStandardItemModel, QStandardItem -from PyQt5.QtWidgets import QWidget -from pandas import DataFrame +from PyQt5.QtGui import QStandardItemModel, QColor -from dgp.core.controllers.dataset_controller import DataSetController +from . import controller_helpers as helpers from dgp.core.oid import OID +from dgp.core.controllers.dataset_controller import DataSetController from dgp.core.controllers.controller_interfaces import IAirborneController, IFlightController -from dgp.core.controllers.gravimeter_controller import GravimeterController from dgp.core.models.dataset import DataSet from dgp.core.models.flight import Flight -from dgp.core.models.meter import Gravimeter -from dgp.core.types.enumerations import DataTypes +from dgp.core.types.enumerations import DataTypes, StateColor from dgp.gui.dialogs.add_flight_dialog import AddFlightDialog -from . import controller_helpers as helpers class FlightController(IFlightController): @@ -59,7 +53,9 @@ def __init__(self, flight: Flight, project: IAirborneController = None): self._active: bool = False self.setData(flight, Qt.UserRole) self.setEditable(False) + self.setBackground(QColor(StateColor.INACTIVE.value)) + self._clones = WeakSet() self._dataset_model = QStandardItemModel() for dataset in self._flight.datasets: @@ -69,7 +65,7 @@ def __init__(self, flight: Flight, project: IAirborneController = None): # Add default DataSet if none defined if not len(self._flight.datasets): - self.add_child(DataSet()) + self.add_child(DataSet(name='DataSet-0')) # TODO: Consider adding MenuPrototype class which could provide the means to build QMenu self._bindings = [ # pragma: no cover @@ -87,9 +83,6 @@ def __init__(self, flight: Flight, project: IAirborneController = None): ('addAction', ('Properties', lambda: self._show_properties_dlg())) ] - - self._clones = WeakSet() - self.update() @property @@ -133,9 +126,9 @@ def set_parent(self, parent: IAirborneController) -> None: def update(self): self.setText(self._flight.name) self.setToolTip(str(self._flight.uid)) - super().update() for clone in self._clones: clone.update() + super().update() def clone(self): clone = FlightController(self._flight, project=self.get_parent()) @@ -196,6 +189,7 @@ def add_child(self, child: DataSet) -> DataSetController: control = DataSetController(child, self) self.appendRow(control) self._dataset_model.appendRow(control.clone()) + self.update() return control def remove_child(self, uid: Union[OID, str], confirm: bool = True) -> bool: @@ -235,6 +229,7 @@ def remove_child(self, uid: Union[OID, str], confirm: bool = True) -> bool: self._flight.datasets.remove(child.datamodel) self._dataset_model.removeRow(child.row()) self.removeRow(child.row()) + self.update() return True def get_child(self, uid: Union[OID, str]) -> DataSetController: diff --git a/dgp/core/controllers/project_controllers.py b/dgp/core/controllers/project_controllers.py index 2f3ec27..73ace6a 100644 --- a/dgp/core/controllers/project_controllers.py +++ b/dgp/core/controllers/project_controllers.py @@ -2,47 +2,37 @@ import functools import itertools import logging -import shlex -import sys import warnings from pathlib import Path -from pprint import pprint -from typing import Union, List +from typing import Union, List, Generator -from PyQt5.QtCore import Qt, QProcess, QObject, QRegExp, pyqtSignal -from PyQt5.QtGui import QStandardItem, QBrush, QColor, QStandardItemModel, QIcon, QRegExpValidator -from PyQt5.QtWidgets import QWidget +from PyQt5.QtCore import Qt, QRegExp +from PyQt5.QtGui import QColor, QStandardItemModel, QIcon, QRegExpValidator from pandas import DataFrame from .project_treemodel import ProjectTreeModel -from dgp.core.file_loader import FileLoader -from dgp.core.oid import OID -from dgp.core.controllers.controller_interfaces import (IAirborneController, IFlightController, IParent, - IDataSetController) -from dgp.core.hdf5_manager import HDF5Manager -from dgp.gui.utils import ProgressEvent from .flight_controller import FlightController from .gravimeter_controller import GravimeterController from .project_containers import ProjectFolder -from .controller_helpers import confirm_action, get_input -from dgp.core.controllers.controller_mixins import AttributeProxy -from dgp.gui.dialogs.add_flight_dialog import AddFlightDialog -from dgp.gui.dialogs.add_gravimeter_dialog import AddGravimeterDialog -from dgp.gui.dialogs.data_import_dialog import DataImportDialog -from dgp.gui.dialogs.project_properties_dialog import ProjectPropertiesDialog +from .controller_helpers import confirm_action, get_input, show_in_explorer +from .controller_interfaces import (IAirborneController, IFlightController, + IDataSetController) +from dgp.core.oid import OID +from dgp.core.file_loader import FileLoader +from dgp.core.hdf5_manager import HDF5Manager from dgp.core.models.datafile import DataFile from dgp.core.models.flight import Flight from dgp.core.models.meter import Gravimeter from dgp.core.models.project import GravityProject, AirborneProject -from dgp.core.types.enumerations import DataTypes +from dgp.core.types.enumerations import DataTypes, Icon, StateColor +from dgp.gui.utils import ProgressEvent +from dgp.gui.dialogs.add_flight_dialog import AddFlightDialog +from dgp.gui.dialogs.add_gravimeter_dialog import AddGravimeterDialog +from dgp.gui.dialogs.data_import_dialog import DataImportDialog +from dgp.gui.dialogs.project_properties_dialog import ProjectPropertiesDialog from dgp.lib.gravity_ingestor import read_at1a from dgp.lib.trajectory_ingestor import import_trajectory -BASE_COLOR = QBrush(QColor('white')) -ACTIVE_COLOR = QBrush(QColor(108, 255, 63)) -FLT_ICON = ":/icons/airborne" -MTR_ICON = ":/icons/meter_config.png" - class AirborneProjectController(IAirborneController): """Construct an AirborneProjectController around an AirborneProject @@ -68,10 +58,11 @@ def __init__(self, project: AirborneProject, path: Path = None): self.setIcon(QIcon(":/icons/dgs")) self.setToolTip(str(self._project.path.resolve())) self.setData(project, Qt.UserRole) + self.setBackground(QColor(StateColor.INACTIVE.value)) - self.flights = ProjectFolder("Flights", FLT_ICON) + self.flights = ProjectFolder("Flights", Icon.AIRBORNE.value) self.appendRow(self.flights) - self.meters = ProjectFolder("Gravimeters", MTR_ICON) + self.meters = ProjectFolder("Gravimeters", Icon.MARINE.value) self.appendRow(self.meters) self._child_map = {Flight: self.flights, @@ -87,7 +78,8 @@ def __init__(self, project: AirborneProject, path: Path = None): self._bindings = [ ('addAction', ('Set Project Name', self.set_name)), - ('addAction', ('Show in Explorer', self.show_in_explorer)), + ('addAction', ('Show in Explorer', + lambda: show_in_explorer(self.path))), ('addAction', ('Project Properties', self.properties_dlg)), ('addAction', ('Close Project', self._close_project)) ] @@ -178,7 +170,7 @@ def remove_child(self, uid: Union[OID, str], confirm: bool = True): if confirm: # pragma: no cover if not confirm_action("Confirm Deletion", "Are you sure you want to delete {!s}" - .format(child.get_attr('name')), + .format(child.get_attr('name')), parent=self.parent_widget): return if isinstance(child, IFlightController): @@ -233,21 +225,6 @@ def set_name(self): # pragma: no cover if new_name: self.set_attr('name', new_name) - def show_in_explorer(self): # pragma: no cover - # TODO Linux KDE/Gnome file browser launch - ppath = str(self.project.path.resolve()) - if sys.platform == 'darwin': - script = 'oascript' - args = '-e tell application \"Finder\" -e activate -e select POSIX file \"' + ppath + '\" -e end tell' - elif sys.platform == 'win32': - script = 'explorer' - args = shlex.quote(ppath) - else: - self.log.warning("Platform %s is not supported for this action.", sys.platform) - return - - QProcess.startDetached(script, shlex.split(args)) - def add_flight_dlg(self): # pragma: no cover dlg = AddFlightDialog(project=self, parent=self.parent_widget) return dlg.exec_() diff --git a/dgp/core/models/dataset.py b/dgp/core/models/dataset.py index f7817d6..eb3b986 100644 --- a/dgp/core/models/dataset.py +++ b/dgp/core/models/dataset.py @@ -68,9 +68,11 @@ class DataSet: """ def __init__(self, gravity: DataFile = None, trajectory: DataFile = None, - segments: List[DataSegment]=None, sensor=None, uid: OID = None): + segments: List[DataSegment]=None, sensor=None, + name: str = None, uid: OID = None): self.uid = uid or OID(self) self.uid.set_pointer(self) + self.name = name or "Data Set" self.segments = segments or [] self._sensor = Reference(self, 'sensor', sensor) diff --git a/dgp/core/types/enumerations.py b/dgp/core/types/enumerations.py index 41a68a3..b697557 100644 --- a/dgp/core/types/enumerations.py +++ b/dgp/core/types/enumerations.py @@ -26,6 +26,26 @@ 'critical': logging.CRITICAL} +class StateColor(enum.Enum): + ACTIVE = '#11dd11' + INACTIVE = '#ffffff' + + +class Icon(enum.Enum): + """Resource Icon paths for Qt resources""" + OPEN_FOLDER = ":/icons/folder_open.jpg" + AIRBORNE = ":/icons/airborne" + MARINE = ":/icons/marine" + METER = ":/icons/meter_config.png" + DGS = ":/icons/dgs" + GRAVITY = ":/icons/gravity" + TRAJECTORY = ":/icons/gps" + NEW_FILE = ":/icons/new_file.png" + SAVE = ":/icons/save_project.png" + ARROW_LEFT = ":/icons/chevron-right" + ARROW_DOWN = ":/icons/chevron-down" + + class LogColors(enum.Enum): DEBUG = 'blue' INFO = 'yellow' @@ -72,42 +92,3 @@ class GPSFields(enum.Enum): serial = ('datenum', 'lat', 'long', 'ell_ht') -class QtItemFlags(enum.IntEnum): - """Qt Item Flags""" - NoItemFlags = 0 - ItemIsSelectable = 1 - ItemIsEditable = 2 - ItemIsDragEnabled = 4 - ItemIsDropEnabled = 8 - ItemIsUserCheckable = 16 - ItemIsEnabled = 32 - ItemIsTristate = 64 - - -class QtDataRoles(enum.IntEnum): - """Qt Item Data Roles""" - # Data to be rendered as text (QString) - DisplayRole = 0 - # Data to be rendered as decoration (QColor, QIcon, QPixmap) - DecorationRole = 1 - # Data displayed in edit mode (QString) - EditRole = 2 - # Data to be displayed in a tooltip on hover (QString) - ToolTipRole = 3 - # Data to be displayed in the status bar on hover (QString) - StatusTipRole = 4 - WhatsThisRole = 5 - # Font used by the delegate to render this item (QFont) - FontRole = 6 - TextAlignmentRole = 7 - # Background color used to render this item (QBrush) - BackgroundRole = 8 - # Foreground or font color used to render this item (QBrush) - ForegroundRole = 9 - CheckStateRole = 10 - SizeHintRole = 13 - InitialSortOrderRole = 14 - - UserRole = 32 - UIDRole = 33 - From 0fb24b6bce91a9d143454939bc5a480869727ede Mon Sep 17 00:00:00 2001 From: Zachery Brady Date: Wed, 1 Aug 2018 10:01:35 -0600 Subject: [PATCH 166/236] Add dataframe align functionality to DataSetController This should also fix tests that were unintentionally broken due to commited references to methods/attributes in this changeset. --- dgp/core/controllers/dataset_controller.py | 18 +++++++++++++++++- tests/test_controllers.py | 4 ---- 2 files changed, 17 insertions(+), 5 deletions(-) diff --git a/dgp/core/controllers/dataset_controller.py b/dgp/core/controllers/dataset_controller.py index a98e704..5287e00 100644 --- a/dgp/core/controllers/dataset_controller.py +++ b/dgp/core/controllers/dataset_controller.py @@ -18,6 +18,7 @@ from dgp.core.controllers.datafile_controller import DataFileController from dgp.core.controllers.controller_bases import BaseController from dgp.core.models.dataset import DataSet, DataSegment +from dgp.lib.etc import align_frames class DataSegmentController(BaseController): @@ -157,9 +158,24 @@ def trajectory(self) -> Union[DataFrame, None]: def dataframe(self) -> DataFrame: if self._dataframe.empty: - self._dataframe: DataFrame = concat([self.gravity, self.trajectory]) + self._dataframe: DataFrame = concat([self.gravity, self.trajectory], axis=1, sort=True) return self._dataframe + def align(self): + if self.gravity.empty or self.trajectory.empty: + # debug + print(f'Gravity or Trajectory is empty, cannot align') + return + from dgp.lib.gravity_ingestor import DGS_AT1A_INTERP_FIELDS + from dgp.lib.trajectory_ingestor import TRAJECTORY_INTERP_FIELDS + + fields = DGS_AT1A_INTERP_FIELDS | TRAJECTORY_INTERP_FIELDS + n_grav, n_traj = align_frames(self._gravity, self._trajectory, + interp_only=fields) + self._gravity = n_grav + self._trajectory = n_traj + print('DataFrame aligned') + # def slice(self, segment_uid: OID): # df = self.dataframe() # if df is None: diff --git a/tests/test_controllers.py b/tests/test_controllers.py index 676ead3..9971412 100644 --- a/tests/test_controllers.py +++ b/tests/test_controllers.py @@ -373,10 +373,6 @@ def test_dataset_data_api(project: AirborneProject, hdf5file, gravdata, gpsdata) assert dataset_ctrl.dataframe() is not None expected: DataFrame = pd.concat([gravdata, gpsdata], axis=1, sort=True) - for col in expected: - pass - # print(f'{col}: {expected[col][3]}') - # print(f'{expected}') expected_cols = [col for col in expected] assert expected.equals(dataset_ctrl.dataframe()) From 1f422e46ad7f299f882a8216c18f5d0e52843a5f Mon Sep 17 00:00:00 2001 From: Zachery Brady Date: Wed, 1 Aug 2018 10:10:11 -0600 Subject: [PATCH 167/236] Add project class meta-data to serialization function. Experimental change to serialization - adds metadata attribute '_module' to the JSON output which contains the qualified module path for each class serialized. In theory this could allow for dynamic construction of instances by the de-serialization method given the type and module path. --- dgp/core/models/project.py | 8 +++++++- 1 file changed, 7 insertions(+), 1 deletion(-) diff --git a/dgp/core/models/project.py b/dgp/core/models/project.py index 391da06..d53a388 100644 --- a/dgp/core/models/project.py +++ b/dgp/core/models/project.py @@ -57,8 +57,10 @@ def default(self, o: Any): keys = o.__slots__ if hasattr(o, '__slots__') else o.__dict__.keys() attrs = {key.lstrip('_'): getattr(o, key) for key in keys} attrs['_type'] = o.__class__.__name__ + attrs['_module'] = o.__class__.__module__ return attrs - j_complex = {'_type': o.__class__.__name__} + j_complex = {'_type': o.__class__.__name__, + '_module': o.__class__.__module__} if isinstance(o, OID): j_complex['base_uuid'] = o.base_uuid return j_complex @@ -137,6 +139,10 @@ def object_hook(self, json_o: dict): if '_type' not in json_o: return json_o _type = json_o.pop('_type') + try: + _module = json_o.pop('_module') + except KeyError: + _module = None params = {key.lstrip('_'): value for key, value in json_o.items()} if _type == OID.__name__: From 5b01e67e0f63b81a0c7c8de8f876b62bd75dd7ce Mon Sep 17 00:00:00 2001 From: Zachery Brady Date: Wed, 1 Aug 2018 13:30:59 -0600 Subject: [PATCH 168/236] Refactoring and update to Qt build script Update build_uic utility script to also compile/output resources.qrc files. Deleted the pre-compiled resources_rc.py file from source control as it should now be built before testing or launch. Added aliases to icons in resources_rc Renamed ProjectTreeView.py to project_tree_view to conform to naming conventions Simplified ProjectTreeView signal connections, there was no need to unbind/rebind whenever the model was changed. Fixed project/flight controller to use Icon and StateColor enumerations uniformly. --- .gitignore | 5 +- dgp/core/controllers/dataset_controller.py | 17 +- dgp/core/controllers/flight_controller.py | 4 +- dgp/core/controllers/project_controllers.py | 4 +- dgp/core/types/enumerations.py | 27 +- dgp/gui/ui/main_window.ui | 12 +- dgp/gui/ui/resources/resources.qrc | 10 +- dgp/gui/utils.py | 20 +- ...rojectTreeView.py => project_tree_view.py} | 20 +- dgp/resources_rc.py | 9897 ----------------- utils/build_uic.py | 59 +- 11 files changed, 104 insertions(+), 9971 deletions(-) rename dgp/gui/views/{ProjectTreeView.py => project_tree_view.py} (90%) delete mode 100644 dgp/resources_rc.py diff --git a/.gitignore b/.gitignore index 8c77f5c..d2182e0 100644 --- a/.gitignore +++ b/.gitignore @@ -15,11 +15,12 @@ venv/ docs/build/ .cache/ .pytest_cache/ +build/ +dist/ # Specific Directives examples/local* tests/sample_data/eotvos_long_result.csv tests/sample_data/eotvos_long_input.txt dgp/gui/ui/*.py -build/ -dist/ +dgp/resources_rc.py diff --git a/dgp/core/controllers/dataset_controller.py b/dgp/core/controllers/dataset_controller.py index 5287e00..8f20620 100644 --- a/dgp/core/controllers/dataset_controller.py +++ b/dgp/core/controllers/dataset_controller.py @@ -2,24 +2,23 @@ from pathlib import Path from typing import List, Union +from pandas import DataFrame, concat from PyQt5.QtCore import Qt from PyQt5.QtGui import QColor, QBrush, QIcon, QStandardItemModel, QStandardItem -from pandas import DataFrame, concat from dgp.core.hdf5_manager import HDF5Manager -from dgp.core.controllers.project_containers import ProjectFolder +from dgp.core.oid import OID from dgp.core.controllers import controller_helpers from dgp.core.models.datafile import DataFile -from dgp.core.types.enumerations import DataTypes -from dgp.core.oid import OID -from dgp.core.controllers.controller_interfaces import (IFlightController, - IDataSetController) -from dgp.core.types.enumerations import StateColor -from dgp.core.controllers.datafile_controller import DataFileController -from dgp.core.controllers.controller_bases import BaseController from dgp.core.models.dataset import DataSet, DataSegment +from dgp.core.types.enumerations import DataTypes, StateColor from dgp.lib.etc import align_frames +from .controller_interfaces import IFlightController, IDataSetController +from .project_containers import ProjectFolder +from .datafile_controller import DataFileController +from .controller_bases import BaseController + class DataSegmentController(BaseController): def __init__(self, segment: DataSegment, clone=False): diff --git a/dgp/core/controllers/flight_controller.py b/dgp/core/controllers/flight_controller.py index 4c2bfa8..dc9ee89 100644 --- a/dgp/core/controllers/flight_controller.py +++ b/dgp/core/controllers/flight_controller.py @@ -142,9 +142,9 @@ def is_active(self): def set_active(self, state: bool): self._active = bool(state) if self._active: - self.setBackground(QColor('green')) + self.setBackground(QColor(StateColor.ACTIVE.value)) else: - self.setBackground(QColor('white')) + self.setBackground(QColor(StateColor.INACTIVE.value)) @property def active_child(self) -> DataSetController: diff --git a/dgp/core/controllers/project_controllers.py b/dgp/core/controllers/project_controllers.py index 73ace6a..9138baa 100644 --- a/dgp/core/controllers/project_controllers.py +++ b/dgp/core/controllers/project_controllers.py @@ -55,14 +55,14 @@ def __init__(self, project: AirborneProject, path: Path = None): self._parent = None self._active = None - self.setIcon(QIcon(":/icons/dgs")) + self.setIcon(QIcon(Icon.DGS.value)) self.setToolTip(str(self._project.path.resolve())) self.setData(project, Qt.UserRole) self.setBackground(QColor(StateColor.INACTIVE.value)) self.flights = ProjectFolder("Flights", Icon.AIRBORNE.value) self.appendRow(self.flights) - self.meters = ProjectFolder("Gravimeters", Icon.MARINE.value) + self.meters = ProjectFolder("Gravimeters", Icon.METER.value) self.appendRow(self.meters) self._child_map = {Flight: self.flights, diff --git a/dgp/core/types/enumerations.py b/dgp/core/types/enumerations.py index b697557..bb8ad61 100644 --- a/dgp/core/types/enumerations.py +++ b/dgp/core/types/enumerations.py @@ -3,23 +3,6 @@ import enum import logging -""" -Dynamic Gravity Processor (DGP) :: lib/enumerations.py -License: Apache License V2 - -Overview: -enumerations.py consolidates various enumeration structures used throughout the project - -Compatibility: -As we are still currently targetting Python 3.5 the following Enum classes -cannot be used - they are not introduced until Python 3.6 - -- enum.Flag -- enum.IntFlag -- enum.auto - -""" - LOG_LEVEL_MAP = {'debug': logging.DEBUG, 'info': logging.INFO, 'warning': logging.WARNING, 'error': logging.ERROR, @@ -33,15 +16,16 @@ class StateColor(enum.Enum): class Icon(enum.Enum): """Resource Icon paths for Qt resources""" - OPEN_FOLDER = ":/icons/folder_open.jpg" + AUTOSIZE = ":/icons/autosize" + OPEN_FOLDER = ":/icons/folder_open" AIRBORNE = ":/icons/airborne" MARINE = ":/icons/marine" - METER = ":/icons/meter_config.png" + METER = ":/icons/meter_config" DGS = ":/icons/dgs" GRAVITY = ":/icons/gravity" TRAJECTORY = ":/icons/gps" - NEW_FILE = ":/icons/new_file.png" - SAVE = ":/icons/save_project.png" + NEW_FILE = ":/icons/new_file" + SAVE = ":/icons/save" ARROW_LEFT = ":/icons/chevron-right" ARROW_DOWN = ":/icons/chevron-down" @@ -85,7 +69,6 @@ class GravityTypes(enum.Enum): TAGS = ('tags', ) -# TODO: I don't like encoding the field tuples in enum - do a separate lookup? class GPSFields(enum.Enum): sow = ('week', 'sow', 'lat', 'long', 'ell_ht') hms = ('mdy', 'hms', 'lat', 'long', 'ell_ht') diff --git a/dgp/gui/ui/main_window.ui b/dgp/gui/ui/main_window.ui index f136a28..a47b3b1 100644 --- a/dgp/gui/ui/main_window.ui +++ b/dgp/gui/ui/main_window.ui @@ -213,7 +213,7 @@ - :/icons/meter_config.png:/icons/meter_config.png + :/icons/meter_config:/icons/meter_config @@ -526,7 +526,7 @@ - :/icons/new_file.png:/icons/new_file.png + :/icons/new_file:/icons/new_file New Project... @@ -538,7 +538,7 @@ - :/icons/folder_open.png:/icons/folder_open.png + :/icons/folder_open:/icons/folder_open Open Project @@ -550,7 +550,7 @@ - :/icons/save_project.png:/icons/save_project.png + :/icons/save:/icons/save Save Project @@ -574,7 +574,7 @@ - :/icons/meter_config.png:/icons/meter_config.png + :/icons/meter_config:/icons/meter_config Add Meter @@ -647,7 +647,7 @@ ProjectTreeView QTreeView -
dgp.gui.views.ProjectTreeView
+
dgp.gui.views.project_tree_view
 MainWorkspace diff --git a/dgp/gui/ui/resources/resources.qrc b/dgp/gui/ui/resources/resources.qrc index 66716ff..1a277ac 100644 --- a/dgp/gui/ui/resources/resources.qrc +++ b/dgp/gui/ui/resources/resources.qrc @@ -1,10 +1,10 @@ - AutosizeStretch_16x.png - folder_open.png - meter_config.png - new_file.png - save_project.png + AutosizeStretch_16x.png + folder_open.png + meter_config.png + new_file.png + save_project.png gps_icon.png grav_icon.png dgs_icon.xpm diff --git a/dgp/gui/utils.py b/dgp/gui/utils.py index 020dfaf..ba096f2 100644 --- a/dgp/gui/utils.py +++ b/dgp/gui/utils.py @@ -1,14 +1,16 @@ -# coding: utf-8 +# -*- coding: utf-8 -*- import logging -import time from pathlib import Path from typing import Union, Callable -from PyQt5.QtCore import QThread, pyqtSignal +from PyQt5.QtCore import QThread, pyqtSignal, pyqtBoundSignal from dgp.core.oid import OID +__all__ = ['LOG_FORMAT', 'LOG_COLOR_MAP', 'LOG_LEVEL_MAP', 'ConsoleHandler', + 'ProgressEvent', 'ThreadedFunction', 'clear_signal'] + LOG_FORMAT = logging.Formatter(fmt="%(asctime)s:%(levelname)s - %(module)s:" "%(funcName)s :: %(message)s", datefmt="%H:%M:%S") @@ -17,6 +19,7 @@ LOG_LEVEL_MAP = {'debug': logging.DEBUG, 'info': logging.INFO, 'warning': logging.WARNING, 'error': logging.ERROR, 'critical': logging.CRITICAL} +_log = logging.getLogger(__name__) class ConsoleHandler(logging.Handler): @@ -92,7 +95,7 @@ def run(self): res = self._functor(*self._args) self.result.emit(res) except Exception as e: - print(e) + _log.exception(f"Exception executing {self.__name__}") def get_project_file(path: Path) -> Union[Path, None]: @@ -113,3 +116,12 @@ def get_project_file(path: Path) -> Union[Path, None]: # TODO: Read JSON and check for presence of a magic attribute that marks a project file for child in sorted(path.glob('*.json')): return child.resolve() + + +def clear_signal(signal: pyqtBoundSignal): + """Utility method to clear all connections from a bound signal""" + while True: + try: + signal.disconnect() + except TypeError: + break diff --git a/dgp/gui/views/ProjectTreeView.py b/dgp/gui/views/project_tree_view.py similarity index 90% rename from dgp/gui/views/ProjectTreeView.py rename to dgp/gui/views/project_tree_view.py index b942e88..038e4a6 100644 --- a/dgp/gui/views/ProjectTreeView.py +++ b/dgp/gui/views/project_tree_view.py @@ -50,29 +50,13 @@ def __init__(self, parent: Optional[QObject]=None): } """) + self.clicked.connect(self._on_click) + self.doubleClicked.connect(self._on_double_click) self._action_refs = [] - @staticmethod - def _clear_signal(signal: pyqtBoundSignal): - """Utility method to clear all connections from a bound signal""" - while True: - try: - signal.disconnect() - except TypeError: - break - def model(self) -> ProjectTreeModel: return super().model() - def setModel(self, model: ProjectTreeModel): - """Set the View Model and connect signals to its slots""" - self._clear_signal(self.clicked) - self._clear_signal(self.doubleClicked) - super().setModel(model) - - self.clicked.connect(self._on_click) - self.doubleClicked.connect(self._on_double_click) - @pyqtSlot(QModelIndex, name='_on_click') def _on_click(self, index: QModelIndex): self.model().item_selected(index) diff --git a/dgp/resources_rc.py b/dgp/resources_rc.py deleted file mode 100644 index c003ebe..0000000 --- a/dgp/resources_rc.py +++ /dev/null @@ -1,9897 +0,0 @@ -# -*- coding: utf-8 -*- - -# Resource object code -# -# Created by: The Resource Compiler for PyQt5 (Qt v5.9.1) -# -# WARNING! 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-\xa1\xd5\x6a\x89\x13\xe2\x06\x86\xc3\x21\x08\x83\xa9\x23\x03\x67\ -\xb2\xe6\xfb\x32\x9b\xcd\x40\x9e\x9e\x1e\x65\xcd\x23\xf7\x81\x29\ -\xb3\x1a\x8f\xc7\xb4\x3b\x68\x09\xc4\x05\x09\xac\xd6\x1e\xe0\x40\ -\x62\xbb\x3a\xb8\x0a\xb7\xa8\xac\x25\x77\x8b\xda\xf5\xea\x3d\x7f\ -\xaf\x08\xe0\x4c\x78\x49\xda\x15\x41\x3b\xca\x4a\x6b\x13\x3e\x00\ -\x38\x65\xfb\xc9\x80\xfc\xf4\x23\x9b\xcd\xee\x3c\xdf\xc3\xc0\x77\ -\x4d\xc9\xc0\x2f\x00\xdc\xdb\x7b\xcf\x8c\x5d\xc0\x6c\xe8\xc0\x70\ -\x9b\xf0\x19\x40\x91\x0f\x6e\xb7\xdb\x12\xb2\x20\x58\x54\x92\x97\ -\x17\x00\x57\xdb\x59\xfd\x8c\x7a\x1c\xdb\x7c\x48\x3e\x9f\x67\xc9\ -\xf0\xc1\xe2\x86\xa4\x1d\xfc\x4e\xf0\x64\x44\x9c\x60\x95\x5f\xb3\ -\xd4\xe2\xbc\x15\xe7\xdc\x4a\x2e\x06\xb4\xa2\x9f\x13\xa4\x4e\x27\ -\x42\x0b\x10\xdc\x59\x5c\x30\x98\x31\x44\xd8\x5b\x11\xf7\x21\x04\ -\x04\x23\x67\x86\x9f\x08\xcb\xb2\x78\x88\xf1\x66\xb1\x15\x70\xa2\ -\xf5\x7f\x81\x6b\x6b\x5d\x39\x1f\x3c\xb0\x4d\x5d\x72\xa1\x42\xa8\ 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-\x32\x32\x31\x36\x35\x39\x22\x2c\x0a\x22\x65\x20\x09\x63\x20\x23\ -\x32\x31\x31\x35\x35\x39\x22\x2c\x0a\x22\x66\x20\x09\x63\x20\x23\ -\x32\x32\x31\x35\x35\x39\x22\x2c\x0a\x22\x67\x20\x09\x63\x20\x23\ -\x32\x32\x31\x35\x35\x41\x22\x2c\x0a\x22\x68\x20\x09\x63\x20\x23\ -\x32\x31\x31\x34\x35\x39\x22\x2c\x0a\x22\x69\x20\x09\x63\x20\x23\ -\x32\x30\x31\x33\x35\x38\x22\x2c\x0a\x22\x6a\x20\x09\x63\x20\x23\ -\x32\x33\x31\x36\x35\x39\x22\x2c\x0a\x22\x6b\x20\x09\x63\x20\x23\ -\x34\x41\x34\x30\x37\x34\x22\x2c\x0a\x22\x6c\x20\x09\x63\x20\x23\ -\x39\x30\x38\x41\x41\x38\x22\x2c\x0a\x22\x6d\x20\x09\x63\x20\x23\ -\x39\x32\x41\x35\x42\x44\x22\x2c\x0a\x22\x6e\x20\x09\x63\x20\x23\ -\x34\x30\x37\x34\x39\x38\x22\x2c\x0a\x22\x6f\x20\x09\x63\x20\x23\ -\x34\x32\x37\x35\x39\x38\x22\x2c\x0a\x22\x70\x20\x09\x63\x20\x23\ -\x39\x35\x42\x31\x43\x34\x22\x2c\x0a\x22\x71\x20\x09\x63\x20\x23\ -\x45\x31\x45\x38\x45\x44\x22\x2c\x0a\x22\x72\x20\x09\x63\x20\x23\ 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-\x37\x36\x36\x46\x39\x37\x22\x2c\x0a\x22\x26\x2e\x09\x63\x20\x23\ -\x44\x35\x44\x33\x44\x45\x22\x2c\x0a\x22\x2a\x2e\x09\x63\x20\x23\ -\x42\x37\x43\x41\x44\x36\x22\x2c\x0a\x22\x3d\x2e\x09\x63\x20\x23\ -\x32\x39\x36\x31\x38\x42\x22\x2c\x0a\x22\x2d\x2e\x09\x63\x20\x23\ -\x43\x46\x44\x42\x45\x33\x22\x2c\x0a\x22\x3b\x2e\x09\x63\x20\x23\ -\x44\x39\x44\x36\x44\x45\x22\x2c\x0a\x22\x3e\x2e\x09\x63\x20\x23\ -\x38\x32\x37\x38\x39\x42\x22\x2c\x0a\x22\x2c\x2e\x09\x63\x20\x23\ -\x32\x34\x31\x38\x35\x39\x22\x2c\x0a\x22\x27\x2e\x09\x63\x20\x23\ -\x32\x39\x31\x44\x35\x43\x22\x2c\x0a\x22\x29\x2e\x09\x63\x20\x23\ -\x32\x30\x31\x34\x35\x38\x22\x2c\x0a\x22\x21\x2e\x09\x63\x20\x23\ -\x33\x32\x32\x34\x35\x46\x22\x2c\x0a\x22\x7e\x2e\x09\x63\x20\x23\ -\x33\x34\x32\x36\x36\x30\x22\x2c\x0a\x22\x7b\x2e\x09\x63\x20\x23\ -\x32\x44\x32\x30\x35\x43\x22\x2c\x0a\x22\x5d\x2e\x09\x63\x20\x23\ -\x32\x32\x31\x36\x35\x41\x22\x2c\x0a\x22\x5e\x2e\x09\x63\x20\x23\ -\x32\x36\x31\x39\x35\x41\x22\x2c\x0a\x22\x2f\x2e\x09\x63\x20\x23\ -\x33\x34\x32\x36\x36\x31\x22\x2c\x0a\x22\x28\x2e\x09\x63\x20\x23\ -\x32\x39\x31\x43\x35\x43\x22\x2c\x0a\x22\x5f\x2e\x09\x63\x20\x23\ -\x33\x36\x32\x39\x36\x31\x22\x2c\x0a\x22\x3a\x2e\x09\x63\x20\x23\ -\x33\x37\x32\x41\x36\x32\x22\x2c\x0a\x22\x3c\x2e\x09\x63\x20\x23\ -\x33\x34\x32\x38\x36\x32\x22\x2c\x0a\x22\x5b\x2e\x09\x63\x20\x23\ -\x32\x44\x32\x32\x35\x46\x22\x2c\x0a\x22\x7d\x2e\x09\x63\x20\x23\ -\x32\x35\x31\x39\x35\x42\x22\x2c\x0a\x22\x7c\x2e\x09\x63\x20\x23\ -\x32\x31\x31\x35\x35\x41\x22\x2c\x0a\x22\x31\x2e\x09\x63\x20\x23\ -\x35\x41\x35\x30\x38\x31\x22\x2c\x0a\x22\x32\x2e\x09\x63\x20\x23\ -\x43\x36\x43\x33\x44\x33\x22\x2c\x0a\x22\x33\x2e\x09\x63\x20\x23\ -\x46\x44\x46\x44\x46\x44\x22\x2c\x0a\x22\x34\x2e\x09\x63\x20\x23\ -\x37\x34\x39\x38\x42\x33\x22\x2c\x0a\x22\x35\x2e\x09\x63\x20\x23\ -\x35\x37\x38\x33\x41\x33\x22\x2c\x0a\x22\x36\x2e\x09\x63\x20\x23\ -\x46\x35\x46\x37\x46\x38\x22\x2c\x0a\x22\x37\x2e\x09\x63\x20\x23\ -\x37\x34\x36\x41\x38\x45\x22\x2c\x0a\x22\x38\x2e\x09\x63\x20\x23\ -\x33\x43\x32\x45\x36\x35\x22\x2c\x0a\x22\x39\x2e\x09\x63\x20\x23\ -\x32\x44\x31\x46\x35\x44\x22\x2c\x0a\x22\x30\x2e\x09\x63\x20\x23\ -\x32\x33\x31\x35\x35\x38\x22\x2c\x0a\x22\x61\x2e\x09\x63\x20\x23\ -\x31\x45\x31\x33\x35\x36\x22\x2c\x0a\x22\x62\x2e\x09\x63\x20\x23\ -\x32\x43\x31\x46\x35\x44\x22\x2c\x0a\x22\x63\x2e\x09\x63\x20\x23\ -\x33\x34\x32\x37\x36\x30\x22\x2c\x0a\x22\x64\x2e\x09\x63\x20\x23\ -\x33\x30\x32\x32\x35\x45\x22\x2c\x0a\x22\x65\x2e\x09\x63\x20\x23\ -\x33\x38\x32\x42\x36\x32\x22\x2c\x0a\x22\x66\x2e\x09\x63\x20\x23\ -\x32\x44\x32\x34\x35\x46\x22\x2c\x0a\x22\x67\x2e\x09\x63\x20\x23\ -\x32\x34\x31\x41\x35\x42\x22\x2c\x0a\x22\x68\x2e\x09\x63\x20\x23\ -\x32\x33\x31\x36\x35\x41\x22\x2c\x0a\x22\x69\x2e\x09\x63\x20\x23\ -\x35\x37\x34\x45\x38\x31\x22\x2c\x0a\x22\x6a\x2e\x09\x63\x20\x23\ -\x39\x41\x41\x34\x42\x43\x22\x2c\x0a\x22\x6b\x2e\x09\x63\x20\x23\ -\x32\x44\x36\x35\x38\x45\x22\x2c\x0a\x22\x6c\x2e\x09\x63\x20\x23\ -\x39\x46\x42\x38\x43\x39\x22\x2c\x0a\x22\x6d\x2e\x09\x63\x20\x23\ -\x37\x37\x36\x45\x39\x35\x22\x2c\x0a\x22\x6e\x2e\x09\x63\x20\x23\ -\x33\x42\x32\x42\x36\x33\x22\x2c\x0a\x22\x6f\x2e\x09\x63\x20\x23\ -\x32\x41\x31\x44\x35\x43\x22\x2c\x0a\x22\x70\x2e\x09\x63\x20\x23\ -\x32\x33\x31\x36\x35\x42\x22\x2c\x0a\x22\x71\x2e\x09\x63\x20\x23\ -\x32\x31\x31\x35\x35\x38\x22\x2c\x0a\x22\x72\x2e\x09\x63\x20\x23\ -\x33\x38\x32\x41\x36\x32\x22\x2c\x0a\x22\x73\x2e\x09\x63\x20\x23\ -\x33\x35\x32\x41\x36\x33\x22\x2c\x0a\x22\x74\x2e\x09\x63\x20\x23\ -\x32\x35\x31\x42\x35\x43\x22\x2c\x0a\x22\x75\x2e\x09\x63\x20\x23\ -\x32\x30\x31\x34\x35\x37\x22\x2c\x0a\x22\x76\x2e\x09\x63\x20\x23\ -\x32\x38\x34\x38\x37\x42\x22\x2c\x0a\x22\x77\x2e\x09\x63\x20\x23\ -\x34\x36\x37\x37\x39\x41\x22\x2c\x0a\x22\x78\x2e\x09\x63\x20\x23\ -\x45\x39\x45\x45\x46\x31\x22\x2c\x0a\x22\x79\x2e\x09\x63\x20\x23\ -\x43\x38\x44\x36\x44\x46\x22\x2c\x0a\x22\x7a\x2e\x09\x63\x20\x23\ -\x38\x42\x38\x33\x41\x32\x22\x2c\x0a\x22\x41\x2e\x09\x63\x20\x23\ -\x32\x42\x31\x45\x35\x45\x22\x2c\x0a\x22\x42\x2e\x09\x63\x20\x23\ -\x32\x31\x31\x34\x35\x38\x22\x2c\x0a\x22\x43\x2e\x09\x63\x20\x23\ -\x32\x41\x32\x30\x35\x45\x22\x2c\x0a\x22\x44\x2e\x09\x63\x20\x23\ -\x32\x36\x31\x43\x35\x43\x22\x2c\x0a\x22\x45\x2e\x09\x63\x20\x23\ -\x31\x42\x32\x33\x36\x31\x22\x2c\x0a\x22\x46\x2e\x09\x63\x20\x23\ -\x30\x43\x34\x34\x37\x37\x22\x2c\x0a\x22\x47\x2e\x09\x63\x20\x23\ -\x35\x30\x36\x35\x38\x46\x22\x2c\x0a\x22\x48\x2e\x09\x63\x20\x23\ -\x45\x42\x45\x41\x45\x46\x22\x2c\x0a\x22\x49\x2e\x09\x63\x20\x23\ -\x44\x35\x44\x46\x45\x35\x22\x2c\x0a\x22\x4a\x2e\x09\x63\x20\x23\ -\x37\x46\x41\x31\x42\x38\x22\x2c\x0a\x22\x4b\x2e\x09\x63\x20\x23\ -\x38\x32\x41\x34\x42\x39\x22\x2c\x0a\x22\x4c\x2e\x09\x63\x20\x23\ -\x41\x45\x41\x39\x42\x45\x22\x2c\x0a\x22\x4d\x2e\x09\x63\x20\x23\ -\x32\x46\x32\x31\x35\x44\x22\x2c\x0a\x22\x4e\x2e\x09\x63\x20\x23\ -\x32\x34\x31\x38\x35\x41\x22\x2c\x0a\x22\x4f\x2e\x09\x63\x20\x23\ -\x32\x31\x31\x36\x35\x41\x22\x2c\x0a\x22\x50\x2e\x09\x63\x20\x23\ -\x32\x30\x31\x37\x35\x41\x22\x2c\x0a\x22\x51\x2e\x09\x63\x20\x23\ -\x31\x31\x33\x37\x36\x46\x22\x2c\x0a\x22\x52\x2e\x09\x63\x20\x23\ -\x31\x30\x33\x37\x37\x30\x22\x2c\x0a\x22\x53\x2e\x09\x63\x20\x23\ -\x32\x30\x31\x37\x35\x42\x22\x2c\x0a\x22\x54\x2e\x09\x63\x20\x23\ -\x39\x30\x38\x41\x41\x41\x22\x2c\x0a\x22\x55\x2e\x09\x63\x20\x23\ -\x43\x45\x44\x41\x45\x32\x22\x2c\x0a\x22\x56\x2e\x09\x63\x20\x23\ -\x39\x44\x42\x36\x43\x37\x22\x2c\x0a\x22\x57\x2e\x09\x63\x20\x23\ -\x38\x46\x41\x43\x43\x30\x22\x2c\x0a\x22\x58\x2e\x09\x63\x20\x23\ -\x42\x46\x43\x45\x44\x39\x22\x2c\x0a\x22\x59\x2e\x09\x63\x20\x23\ -\x43\x43\x44\x39\x45\x31\x22\x2c\x0a\x22\x5a\x2e\x09\x63\x20\x23\ -\x36\x33\x35\x38\x38\x33\x22\x2c\x0a\x22\x60\x2e\x09\x63\x20\x23\ -\x33\x35\x32\x36\x36\x31\x22\x2c\x0a\x22\x20\x2b\x09\x63\x20\x23\ -\x33\x34\x32\x35\x36\x31\x22\x2c\x0a\x22\x2e\x2b\x09\x63\x20\x23\ -\x32\x43\x31\x45\x35\x44\x22\x2c\x0a\x22\x2b\x2b\x09\x63\x20\x23\ -\x32\x35\x31\x41\x35\x43\x22\x2c\x0a\x22\x40\x2b\x09\x63\x20\x23\ -\x32\x33\x31\x38\x35\x42\x22\x2c\x0a\x22\x23\x2b\x09\x63\x20\x23\ -\x32\x30\x31\x34\x35\x39\x22\x2c\x0a\x22\x24\x2b\x09\x63\x20\x23\ -\x31\x38\x32\x43\x36\x38\x22\x2c\x0a\x22\x25\x2b\x09\x63\x20\x23\ -\x30\x43\x34\x34\x37\x39\x22\x2c\x0a\x22\x26\x2b\x09\x63\x20\x23\ -\x31\x41\x32\x34\x36\x33\x22\x2c\x0a\x22\x2a\x2b\x09\x63\x20\x23\ -\x33\x39\x32\x46\x36\x39\x22\x2c\x0a\x22\x3d\x2b\x09\x63\x20\x23\ -\x41\x32\x41\x38\x42\x45\x22\x2c\x0a\x22\x2d\x2b\x09\x63\x20\x23\ -\x38\x44\x41\x42\x42\x46\x22\x2c\x0a\x22\x3b\x2b\x09\x63\x20\x23\ -\x41\x39\x42\x46\x43\x45\x22\x2c\x0a\x22\x3e\x2b\x09\x63\x20\x23\ -\x39\x37\x42\x31\x43\x33\x22\x2c\x0a\x22\x2c\x2b\x09\x63\x20\x23\ -\x39\x39\x39\x32\x41\x45\x22\x2c\x0a\x22\x27\x2b\x09\x63\x20\x23\ -\x33\x37\x32\x38\x36\x31\x22\x2c\x0a\x22\x29\x2b\x09\x63\x20\x23\ -\x33\x36\x32\x38\x36\x32\x22\x2c\x0a\x22\x21\x2b\x09\x63\x20\x23\ -\x32\x37\x31\x42\x35\x42\x22\x2c\x0a\x22\x7e\x2b\x09\x63\x20\x23\ -\x32\x35\x31\x39\x35\x41\x22\x2c\x0a\x22\x7b\x2b\x09\x63\x20\x23\ -\x32\x30\x31\x35\x35\x38\x22\x2c\x0a\x22\x5d\x2b\x09\x63\x20\x23\ -\x32\x39\x31\x44\x35\x44\x22\x2c\x0a\x22\x5e\x2b\x09\x63\x20\x23\ -\x32\x45\x32\x32\x35\x46\x22\x2c\x0a\x22\x2f\x2b\x09\x63\x20\x23\ -\x33\x30\x32\x34\x35\x46\x22\x2c\x0a\x22\x28\x2b\x09\x63\x20\x23\ -\x33\x33\x32\x37\x36\x32\x22\x2c\x0a\x22\x5f\x2b\x09\x63\x20\x23\ -\x33\x34\x32\x38\x36\x31\x22\x2c\x0a\x22\x3a\x2b\x09\x63\x20\x23\ -\x32\x46\x32\x33\x35\x46\x22\x2c\x0a\x22\x3c\x2b\x09\x63\x20\x23\ -\x32\x34\x31\x38\x35\x43\x22\x2c\x0a\x22\x5b\x2b\x09\x63\x20\x23\ -\x31\x46\x31\x32\x35\x36\x22\x2c\x0a\x22\x7d\x2b\x09\x63\x20\x23\ -\x31\x45\x31\x32\x35\x36\x22\x2c\x0a\x22\x7c\x2b\x09\x63\x20\x23\ -\x31\x42\x31\x46\x35\x46\x22\x2c\x0a\x22\x31\x2b\x09\x63\x20\x23\ -\x30\x46\x34\x33\x37\x37\x22\x2c\x0a\x22\x32\x2b\x09\x63\x20\x23\ -\x31\x35\x33\x31\x36\x43\x22\x2c\x0a\x22\x33\x2b\x09\x63\x20\x23\ -\x37\x37\x36\x46\x39\x37\x22\x2c\x0a\x22\x34\x2b\x09\x63\x20\x23\ -\x43\x45\x44\x39\x45\x31\x22\x2c\x0a\x22\x35\x2b\x09\x63\x20\x23\ -\x36\x44\x39\x34\x41\x45\x22\x2c\x0a\x22\x36\x2b\x09\x63\x20\x23\ -\x34\x32\x37\x34\x39\x38\x22\x2c\x0a\x22\x37\x2b\x09\x63\x20\x23\ -\x34\x45\x37\x44\x39\x44\x22\x2c\x0a\x22\x38\x2b\x09\x63\x20\x23\ -\x43\x31\x44\x30\x44\x39\x22\x2c\x0a\x22\x39\x2b\x09\x63\x20\x23\ -\x35\x34\x34\x39\x37\x41\x22\x2c\x0a\x22\x30\x2b\x09\x63\x20\x23\ -\x33\x35\x32\x38\x36\x31\x22\x2c\x0a\x22\x61\x2b\x09\x63\x20\x23\ -\x33\x33\x32\x36\x36\x31\x22\x2c\x0a\x22\x62\x2b\x09\x63\x20\x23\ -\x33\x37\x32\x39\x36\x32\x22\x2c\x0a\x22\x63\x2b\x09\x63\x20\x23\ -\x32\x33\x31\x37\x35\x41\x22\x2c\x0a\x22\x64\x2b\x09\x63\x20\x23\ -\x32\x45\x32\x31\x35\x45\x22\x2c\x0a\x22\x65\x2b\x09\x63\x20\x23\ -\x32\x37\x31\x45\x35\x45\x22\x2c\x0a\x22\x66\x2b\x09\x63\x20\x23\ -\x33\x35\x32\x37\x36\x31\x22\x2c\x0a\x22\x67\x2b\x09\x63\x20\x23\ -\x32\x42\x31\x46\x35\x44\x22\x2c\x0a\x22\x68\x2b\x09\x63\x20\x23\ -\x32\x33\x31\x37\x35\x38\x22\x2c\x0a\x22\x69\x2b\x09\x63\x20\x23\ -\x31\x46\x31\x36\x35\x39\x22\x2c\x0a\x22\x6a\x2b\x09\x63\x20\x23\ -\x31\x32\x33\x36\x36\x46\x22\x2c\x0a\x22\x6b\x2b\x09\x63\x20\x23\ -\x31\x30\x33\x43\x37\x33\x22\x2c\x0a\x22\x6c\x2b\x09\x63\x20\x23\ -\x32\x30\x31\x42\x35\x44\x22\x2c\x0a\x22\x6d\x2b\x09\x63\x20\x23\ -\x33\x35\x32\x39\x36\x37\x22\x2c\x0a\x22\x6e\x2b\x09\x63\x20\x23\ -\x43\x35\x43\x33\x44\x31\x22\x2c\x0a\x22\x6f\x2b\x09\x63\x20\x23\ -\x44\x39\x45\x32\x45\x37\x22\x2c\x0a\x22\x70\x2b\x09\x63\x20\x23\ -\x37\x46\x41\x30\x42\x38\x22\x2c\x0a\x22\x71\x2b\x09\x63\x20\x23\ -\x33\x46\x37\x30\x39\x34\x22\x2c\x0a\x22\x72\x2b\x09\x63\x20\x23\ -\x39\x43\x42\x35\x43\x36\x22\x2c\x0a\x22\x73\x2b\x09\x63\x20\x23\ -\x41\x42\x41\x35\x42\x42\x22\x2c\x0a\x22\x74\x2b\x09\x63\x20\x23\ -\x33\x32\x32\x33\x35\x46\x22\x2c\x0a\x22\x75\x2b\x09\x63\x20\x23\ -\x33\x34\x32\x37\x36\x31\x22\x2c\x0a\x22\x76\x2b\x09\x63\x20\x23\ -\x32\x34\x31\x38\x35\x42\x22\x2c\x0a\x22\x77\x2b\x09\x63\x20\x23\ -\x32\x32\x31\x37\x35\x42\x22\x2c\x0a\x22\x78\x2b\x09\x63\x20\x23\ -\x32\x41\x31\x45\x35\x43\x22\x2c\x0a\x22\x79\x2b\x09\x63\x20\x23\ -\x35\x45\x35\x35\x38\x33\x22\x2c\x0a\x22\x7a\x2b\x09\x63\x20\x23\ -\x38\x34\x37\x44\x39\x45\x22\x2c\x0a\x22\x41\x2b\x09\x63\x20\x23\ -\x35\x39\x34\x45\x37\x43\x22\x2c\x0a\x22\x42\x2b\x09\x63\x20\x23\ -\x33\x35\x32\x38\x36\x32\x22\x2c\x0a\x22\x43\x2b\x09\x63\x20\x23\ -\x33\x32\x32\x35\x36\x31\x22\x2c\x0a\x22\x44\x2b\x09\x63\x20\x23\ -\x33\x30\x32\x33\x36\x30\x22\x2c\x0a\x22\x45\x2b\x09\x63\x20\x23\ -\x33\x35\x32\x39\x36\x34\x22\x2c\x0a\x22\x46\x2b\x09\x63\x20\x23\ -\x31\x41\x33\x31\x36\x42\x22\x2c\x0a\x22\x47\x2b\x09\x63\x20\x23\ -\x31\x30\x34\x37\x37\x41\x22\x2c\x0a\x22\x48\x2b\x09\x63\x20\x23\ -\x32\x30\x32\x41\x36\x36\x22\x2c\x0a\x22\x49\x2b\x09\x63\x20\x23\ -\x31\x46\x31\x32\x35\x37\x22\x2c\x0a\x22\x4a\x2b\x09\x63\x20\x23\ -\x32\x34\x31\x37\x35\x42\x22\x2c\x0a\x22\x4b\x2b\x09\x63\x20\x23\ -\x32\x34\x31\x37\x35\x43\x22\x2c\x0a\x22\x4c\x2b\x09\x63\x20\x23\ -\x38\x34\x37\x45\x41\x31\x22\x2c\x0a\x22\x4d\x2b\x09\x63\x20\x23\ -\x36\x39\x38\x46\x41\x41\x22\x2c\x0a\x22\x4e\x2b\x09\x63\x20\x23\ -\x41\x33\x42\x41\x43\x42\x22\x2c\x0a\x22\x4f\x2b\x09\x63\x20\x23\ -\x44\x31\x44\x44\x45\x34\x22\x2c\x0a\x22\x50\x2b\x09\x63\x20\x23\ -\x42\x36\x43\x39\x44\x35\x22\x2c\x0a\x22\x51\x2b\x09\x63\x20\x23\ -\x37\x39\x36\x46\x39\x33\x22\x2c\x0a\x22\x52\x2b\x09\x63\x20\x23\ -\x34\x30\x33\x33\x36\x41\x22\x2c\x0a\x22\x53\x2b\x09\x63\x20\x23\ -\x39\x39\x39\x33\x41\x45\x22\x2c\x0a\x22\x54\x2b\x09\x63\x20\x23\ -\x41\x44\x41\x39\x42\x45\x22\x2c\x0a\x22\x55\x2b\x09\x63\x20\x23\ -\x41\x41\x41\x36\x42\x44\x22\x2c\x0a\x22\x56\x2b\x09\x63\x20\x23\ -\x41\x39\x41\x35\x42\x44\x22\x2c\x0a\x22\x57\x2b\x09\x63\x20\x23\ -\x41\x31\x39\x43\x42\x37\x22\x2c\x0a\x22\x58\x2b\x09\x63\x20\x23\ -\x38\x43\x38\x37\x41\x38\x22\x2c\x0a\x22\x59\x2b\x09\x63\x20\x23\ -\x36\x31\x35\x39\x38\x38\x22\x2c\x0a\x22\x5a\x2b\x09\x63\x20\x23\ -\x32\x39\x31\x45\x35\x46\x22\x2c\x0a\x22\x60\x2b\x09\x63\x20\x23\ -\x32\x39\x31\x44\x35\x42\x22\x2c\x0a\x22\x20\x40\x09\x63\x20\x23\ -\x33\x35\x32\x41\x36\x37\x22\x2c\x0a\x22\x2e\x40\x09\x63\x20\x23\ -\x34\x39\x33\x46\x37\x36\x22\x2c\x0a\x22\x2b\x40\x09\x63\x20\x23\ -\x35\x33\x34\x39\x37\x45\x22\x2c\x0a\x22\x40\x40\x09\x63\x20\x23\ -\x34\x42\x34\x30\x37\x35\x22\x2c\x0a\x22\x23\x40\x09\x63\x20\x23\ -\x36\x30\x35\x36\x38\x32\x22\x2c\x0a\x22\x24\x40\x09\x63\x20\x23\ -\x44\x44\x44\x43\x45\x32\x22\x2c\x0a\x22\x25\x40\x09\x63\x20\x23\ -\x46\x36\x46\x35\x46\x36\x22\x2c\x0a\x22\x26\x40\x09\x63\x20\x23\ -\x38\x31\x37\x42\x39\x46\x22\x2c\x0a\x22\x2a\x40\x09\x63\x20\x23\ -\x32\x41\x31\x44\x35\x45\x22\x2c\x0a\x22\x3d\x40\x09\x63\x20\x23\ -\x36\x45\x36\x34\x38\x43\x22\x2c\x0a\x22\x2d\x40\x09\x63\x20\x23\ -\x41\x38\x41\x32\x42\x38\x22\x2c\x0a\x22\x3b\x40\x09\x63\x20\x23\ -\x38\x34\x39\x33\x41\x43\x22\x2c\x0a\x22\x3e\x40\x09\x63\x20\x23\ -\x31\x46\x35\x37\x38\x33\x22\x2c\x0a\x22\x2c\x40\x09\x63\x20\x23\ -\x37\x30\x38\x44\x41\x39\x22\x2c\x0a\x22\x27\x40\x09\x63\x20\x23\ -\x38\x31\x37\x39\x39\x42\x22\x2c\x0a\x22\x29\x40\x09\x63\x20\x23\ -\x33\x42\x32\x46\x36\x37\x22\x2c\x0a\x22\x21\x40\x09\x63\x20\x23\ -\x34\x41\x34\x31\x37\x36\x22\x2c\x0a\x22\x7e\x40\x09\x63\x20\x23\ -\x44\x43\x44\x46\x45\x35\x22\x2c\x0a\x22\x7b\x40\x09\x63\x20\x23\ -\x41\x37\x42\x43\x43\x42\x22\x2c\x0a\x22\x5d\x40\x09\x63\x20\x23\ -\x44\x33\x44\x45\x45\x33\x22\x2c\x0a\x22\x5e\x40\x09\x63\x20\x23\ -\x43\x33\x44\x32\x44\x42\x22\x2c\x0a\x22\x2f\x40\x09\x63\x20\x23\ -\x38\x33\x41\x33\x42\x38\x22\x2c\x0a\x22\x28\x40\x09\x63\x20\x23\ -\x35\x31\x34\x34\x37\x34\x22\x2c\x0a\x22\x5f\x40\x09\x63\x20\x23\ -\x33\x36\x32\x38\x36\x31\x22\x2c\x0a\x22\x3a\x40\x09\x63\x20\x23\ -\x34\x35\x33\x38\x36\x45\x22\x2c\x0a\x22\x3c\x40\x09\x63\x20\x23\ -\x44\x46\x44\x44\x45\x35\x22\x2c\x0a\x22\x5b\x40\x09\x63\x20\x23\ -\x46\x45\x46\x46\x46\x45\x22\x2c\x0a\x22\x7d\x40\x09\x63\x20\x23\ -\x46\x36\x46\x35\x46\x38\x22\x2c\x0a\x22\x7c\x40\x09\x63\x20\x23\ -\x33\x44\x33\x33\x36\x43\x22\x2c\x0a\x22\x31\x40\x09\x63\x20\x23\ -\x32\x36\x31\x41\x35\x42\x22\x2c\x0a\x22\x32\x40\x09\x63\x20\x23\ -\x33\x35\x32\x38\x36\x30\x22\x2c\x0a\x22\x33\x40\x09\x63\x20\x23\ -\x33\x33\x32\x39\x36\x31\x22\x2c\x0a\x22\x34\x40\x09\x63\x20\x23\ 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-\x46\x33\x46\x36\x46\x36\x22\x2c\x0a\x22\x69\x40\x09\x63\x20\x23\ -\x46\x42\x46\x42\x46\x42\x22\x2c\x0a\x22\x6a\x40\x09\x63\x20\x23\ -\x41\x45\x41\x38\x42\x44\x22\x2c\x0a\x22\x6b\x40\x09\x63\x20\x23\ -\x33\x45\x33\x32\x36\x37\x22\x2c\x0a\x22\x6c\x40\x09\x63\x20\x23\ -\x32\x43\x32\x30\x36\x31\x22\x2c\x0a\x22\x6d\x40\x09\x63\x20\x23\ -\x43\x33\x43\x30\x44\x30\x22\x2c\x0a\x22\x6e\x40\x09\x63\x20\x23\ -\x38\x46\x41\x44\x43\x30\x22\x2c\x0a\x22\x6f\x40\x09\x63\x20\x23\ -\x37\x32\x39\x38\x42\x31\x22\x2c\x0a\x22\x70\x40\x09\x63\x20\x23\ -\x36\x38\x38\x46\x41\x39\x22\x2c\x0a\x22\x71\x40\x09\x63\x20\x23\ -\x37\x46\x39\x46\x42\x36\x22\x2c\x0a\x22\x72\x40\x09\x63\x20\x23\ -\x42\x46\x42\x43\x43\x42\x22\x2c\x0a\x22\x73\x40\x09\x63\x20\x23\ -\x34\x30\x33\x32\x36\x37\x22\x2c\x0a\x22\x74\x40\x09\x63\x20\x23\ -\x34\x34\x33\x37\x36\x44\x22\x2c\x0a\x22\x75\x40\x09\x63\x20\x23\ -\x45\x30\x44\x44\x45\x35\x22\x2c\x0a\x22\x76\x40\x09\x63\x20\x23\ 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-\x43\x46\x43\x43\x44\x38\x22\x2c\x0a\x22\x4b\x40\x09\x63\x20\x23\ -\x36\x42\x39\x32\x41\x45\x22\x2c\x0a\x22\x4c\x40\x09\x63\x20\x23\ -\x31\x36\x34\x34\x37\x38\x22\x2c\x0a\x22\x4d\x40\x09\x63\x20\x23\ -\x36\x30\x36\x33\x38\x45\x22\x2c\x0a\x22\x4e\x40\x09\x63\x20\x23\ -\x42\x34\x42\x30\x43\x34\x22\x2c\x0a\x22\x4f\x40\x09\x63\x20\x23\ -\x46\x38\x46\x37\x46\x37\x22\x2c\x0a\x22\x50\x40\x09\x63\x20\x23\ -\x37\x36\x36\x43\x39\x31\x22\x2c\x0a\x22\x51\x40\x09\x63\x20\x23\ -\x33\x32\x32\x35\x35\x46\x22\x2c\x0a\x22\x52\x40\x09\x63\x20\x23\ -\x39\x42\x39\x35\x42\x32\x22\x2c\x0a\x22\x53\x40\x09\x63\x20\x23\ -\x43\x35\x44\x33\x44\x43\x22\x2c\x0a\x22\x54\x40\x09\x63\x20\x23\ -\x39\x45\x42\x36\x43\x36\x22\x2c\x0a\x22\x55\x40\x09\x63\x20\x23\ -\x44\x44\x45\x34\x45\x39\x22\x2c\x0a\x22\x56\x40\x09\x63\x20\x23\ -\x46\x31\x46\x34\x46\x35\x22\x2c\x0a\x22\x57\x40\x09\x63\x20\x23\ -\x46\x32\x46\x34\x46\x36\x22\x2c\x0a\x22\x58\x40\x09\x63\x20\x23\ -\x39\x44\x39\x37\x42\x31\x22\x2c\x0a\x22\x59\x40\x09\x63\x20\x23\ -\x33\x38\x32\x41\x36\x31\x22\x2c\x0a\x22\x5a\x40\x09\x63\x20\x23\ -\x34\x31\x33\x35\x36\x44\x22\x2c\x0a\x22\x60\x40\x09\x63\x20\x23\ -\x44\x46\x44\x44\x45\x36\x22\x2c\x0a\x22\x20\x23\x09\x63\x20\x23\ -\x43\x45\x43\x43\x44\x39\x22\x2c\x0a\x22\x2e\x23\x09\x63\x20\x23\ -\x32\x44\x32\x32\x36\x32\x22\x2c\x0a\x22\x2b\x23\x09\x63\x20\x23\ -\x34\x44\x34\x33\x37\x38\x22\x2c\x0a\x22\x40\x23\x09\x63\x20\x23\ -\x43\x34\x43\x31\x44\x31\x22\x2c\x0a\x22\x23\x23\x09\x63\x20\x23\ -\x46\x35\x46\x35\x46\x37\x22\x2c\x0a\x22\x24\x23\x09\x63\x20\x23\ -\x36\x37\x36\x31\x38\x45\x22\x2c\x0a\x22\x25\x23\x09\x63\x20\x23\ -\x32\x36\x31\x44\x35\x44\x22\x2c\x0a\x22\x26\x23\x09\x63\x20\x23\ -\x39\x43\x39\x42\x42\x34\x22\x2c\x0a\x22\x2a\x23\x09\x63\x20\x23\ -\x45\x34\x45\x33\x45\x39\x22\x2c\x0a\x22\x3d\x23\x09\x63\x20\x23\ -\x34\x44\x34\x32\x37\x33\x22\x2c\x0a\x22\x2d\x23\x09\x63\x20\x23\ -\x32\x46\x32\x31\x36\x30\x22\x2c\x0a\x22\x3b\x23\x09\x63\x20\x23\ -\x36\x37\x35\x44\x38\x37\x22\x2c\x0a\x22\x3e\x23\x09\x63\x20\x23\ -\x46\x32\x46\x31\x46\x34\x22\x2c\x0a\x22\x2c\x23\x09\x63\x20\x23\ -\x38\x34\x37\x43\x39\x44\x22\x2c\x0a\x22\x27\x23\x09\x63\x20\x23\ -\x35\x42\x35\x30\x37\x46\x22\x2c\x0a\x22\x29\x23\x09\x63\x20\x23\ -\x46\x31\x46\x30\x46\x32\x22\x2c\x0a\x22\x21\x23\x09\x63\x20\x23\ -\x38\x35\x41\x36\x42\x43\x22\x2c\x0a\x22\x7e\x23\x09\x63\x20\x23\ -\x31\x37\x34\x44\x37\x44\x22\x2c\x0a\x22\x7b\x23\x09\x63\x20\x23\ -\x32\x42\x33\x35\x36\x43\x22\x2c\x0a\x22\x5d\x23\x09\x63\x20\x23\ -\x34\x34\x33\x39\x37\x30\x22\x2c\x0a\x22\x5e\x23\x09\x63\x20\x23\ -\x38\x39\x38\x33\x41\x35\x22\x2c\x0a\x22\x2f\x23\x09\x63\x20\x23\ -\x37\x37\x36\x46\x39\x35\x22\x2c\x0a\x22\x28\x23\x09\x63\x20\x23\ -\x34\x38\x33\x43\x36\x46\x22\x2c\x0a\x22\x5f\x23\x09\x63\x20\x23\ -\x33\x38\x32\x42\x36\x33\x22\x2c\x0a\x22\x3a\x23\x09\x63\x20\x23\ 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-\x38\x35\x37\x45\x39\x46\x22\x2c\x0a\x22\x61\x23\x09\x63\x20\x23\ -\x46\x36\x46\x36\x46\x37\x22\x2c\x0a\x22\x62\x23\x09\x63\x20\x23\ -\x38\x45\x38\x37\x41\x35\x22\x2c\x0a\x22\x63\x23\x09\x63\x20\x23\ -\x35\x35\x34\x41\x37\x43\x22\x2c\x0a\x22\x64\x23\x09\x63\x20\x23\ -\x46\x38\x46\x37\x46\x38\x22\x2c\x0a\x22\x65\x23\x09\x63\x20\x23\ -\x37\x33\x36\x39\x38\x46\x22\x2c\x0a\x22\x66\x23\x09\x63\x20\x23\ -\x39\x31\x41\x42\x42\x46\x22\x2c\x0a\x22\x67\x23\x09\x63\x20\x23\ -\x32\x33\x35\x45\x38\x39\x22\x2c\x0a\x22\x68\x23\x09\x63\x20\x23\ -\x38\x46\x41\x38\x42\x44\x22\x2c\x0a\x22\x69\x23\x09\x63\x20\x23\ -\x41\x33\x39\x43\x42\x35\x22\x2c\x0a\x22\x6a\x23\x09\x63\x20\x23\ -\x37\x43\x37\x32\x39\x35\x22\x2c\x0a\x22\x6b\x23\x09\x63\x20\x23\ -\x34\x46\x34\x34\x37\x36\x22\x2c\x0a\x22\x6c\x23\x09\x63\x20\x23\ -\x32\x43\x32\x30\x35\x46\x22\x2c\x0a\x22\x6d\x23\x09\x63\x20\x23\ -\x35\x45\x35\x35\x38\x34\x22\x2c\x0a\x22\x6e\x23\x09\x63\x20\x23\ 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-\x33\x35\x35\x36\x38\x34\x22\x2c\x0a\x22\x7e\x24\x09\x63\x20\x23\ -\x42\x43\x42\x39\x43\x41\x22\x2c\x0a\x22\x7b\x24\x09\x63\x20\x23\ -\x45\x31\x44\x46\x45\x36\x22\x2c\x0a\x22\x5d\x24\x09\x63\x20\x23\ -\x36\x41\x36\x32\x38\x43\x22\x2c\x0a\x22\x5e\x24\x09\x63\x20\x23\ -\x32\x38\x31\x42\x35\x44\x22\x2c\x0a\x22\x2f\x24\x09\x63\x20\x23\ -\x34\x37\x33\x45\x37\x33\x22\x2c\x0a\x22\x28\x24\x09\x63\x20\x23\ -\x45\x32\x45\x33\x45\x38\x22\x2c\x0a\x22\x5f\x24\x09\x63\x20\x23\ -\x39\x35\x42\x30\x43\x32\x22\x2c\x0a\x22\x3a\x24\x09\x63\x20\x23\ -\x38\x30\x41\x31\x42\x37\x22\x2c\x0a\x22\x3c\x24\x09\x63\x20\x23\ -\x42\x34\x43\x38\x44\x34\x22\x2c\x0a\x22\x5b\x24\x09\x63\x20\x23\ -\x37\x45\x41\x31\x42\x38\x22\x2c\x0a\x22\x7d\x24\x09\x63\x20\x23\ -\x36\x36\x35\x44\x38\x41\x22\x2c\x0a\x22\x7c\x24\x09\x63\x20\x23\ -\x32\x45\x32\x30\x35\x45\x22\x2c\x0a\x22\x31\x24\x09\x63\x20\x23\ -\x34\x41\x33\x45\x37\x31\x22\x2c\x0a\x22\x32\x24\x09\x63\x20\x23\ -\x44\x34\x44\x31\x44\x43\x22\x2c\x0a\x22\x33\x24\x09\x63\x20\x23\ -\x33\x38\x32\x43\x36\x37\x22\x2c\x0a\x22\x34\x24\x09\x63\x20\x23\ -\x35\x32\x34\x46\x38\x31\x22\x2c\x0a\x22\x35\x24\x09\x63\x20\x23\ -\x45\x44\x46\x30\x46\x33\x22\x2c\x0a\x22\x36\x24\x09\x63\x20\x23\ -\x42\x36\x42\x32\x43\x37\x22\x2c\x0a\x22\x37\x24\x09\x63\x20\x23\ -\x33\x30\x32\x35\x36\x33\x22\x2c\x0a\x22\x38\x24\x09\x63\x20\x23\ -\x42\x43\x42\x38\x43\x41\x22\x2c\x0a\x22\x39\x24\x09\x63\x20\x23\ -\x44\x37\x44\x36\x44\x46\x22\x2c\x0a\x22\x30\x24\x09\x63\x20\x23\ -\x38\x35\x37\x45\x41\x31\x22\x2c\x0a\x22\x61\x24\x09\x63\x20\x23\ -\x36\x45\x36\x35\x39\x30\x22\x2c\x0a\x22\x62\x24\x09\x63\x20\x23\ -\x36\x45\x36\x35\x38\x44\x22\x2c\x0a\x22\x63\x24\x09\x63\x20\x23\ -\x36\x37\x35\x45\x38\x37\x22\x2c\x0a\x22\x64\x24\x09\x63\x20\x23\ -\x35\x33\x34\x38\x37\x39\x22\x2c\x0a\x22\x65\x24\x09\x63\x20\x23\ -\x32\x39\x32\x41\x36\x35\x22\x2c\x0a\x22\x66\x24\x09\x63\x20\x23\ -\x31\x32\x33\x46\x37\x34\x22\x2c\x0a\x22\x67\x24\x09\x63\x20\x23\ -\x31\x35\x33\x42\x37\x31\x22\x2c\x0a\x22\x68\x24\x09\x63\x20\x23\ -\x32\x42\x32\x35\x36\x32\x22\x2c\x0a\x22\x69\x24\x09\x63\x20\x23\ -\x33\x44\x33\x30\x36\x39\x22\x2c\x0a\x22\x6a\x24\x09\x63\x20\x23\ -\x39\x42\x39\x35\x41\x45\x22\x2c\x0a\x22\x6b\x24\x09\x63\x20\x23\ -\x43\x30\x42\x43\x43\x43\x22\x2c\x0a\x22\x6c\x24\x09\x63\x20\x23\ -\x45\x37\x45\x36\x45\x42\x22\x2c\x0a\x22\x6d\x24\x09\x63\x20\x23\ -\x42\x31\x41\x44\x43\x32\x22\x2c\x0a\x22\x6e\x24\x09\x63\x20\x23\ -\x33\x39\x32\x43\x36\x34\x22\x2c\x0a\x22\x6f\x24\x09\x63\x20\x23\ -\x32\x37\x31\x42\x35\x43\x22\x2c\x0a\x22\x70\x24\x09\x63\x20\x23\ -\x34\x43\x34\x33\x37\x38\x22\x2c\x0a\x22\x71\x24\x09\x63\x20\x23\ -\x45\x45\x45\x45\x46\x30\x22\x2c\x0a\x22\x72\x24\x09\x63\x20\x23\ -\x39\x46\x42\x38\x43\x38\x22\x2c\x0a\x22\x73\x24\x09\x63\x20\x23\ -\x41\x43\x43\x32\x44\x30\x22\x2c\x0a\x22\x74\x24\x09\x63\x20\x23\ 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-\x33\x34\x33\x35\x36\x44\x22\x2c\x0a\x22\x49\x24\x09\x63\x20\x23\ -\x35\x38\x34\x46\x37\x45\x22\x2c\x0a\x22\x4a\x24\x09\x63\x20\x23\ -\x36\x37\x35\x45\x38\x39\x22\x2c\x0a\x22\x4b\x24\x09\x63\x20\x23\ -\x32\x43\x31\x46\x35\x46\x22\x2c\x0a\x22\x4c\x24\x09\x63\x20\x23\ -\x36\x34\x35\x43\x38\x39\x22\x2c\x0a\x22\x4d\x24\x09\x63\x20\x23\ -\x45\x36\x45\x35\x45\x42\x22\x2c\x0a\x22\x4e\x24\x09\x63\x20\x23\ -\x44\x32\x43\x46\x44\x42\x22\x2c\x0a\x22\x4f\x24\x09\x63\x20\x23\ -\x34\x31\x33\x35\x36\x41\x22\x2c\x0a\x22\x50\x24\x09\x63\x20\x23\ -\x32\x35\x31\x38\x35\x42\x22\x2c\x0a\x22\x51\x24\x09\x63\x20\x23\ -\x35\x35\x34\x44\x37\x45\x22\x2c\x0a\x22\x52\x24\x09\x63\x20\x23\ -\x46\x32\x46\x32\x46\x34\x22\x2c\x0a\x22\x53\x24\x09\x63\x20\x23\ -\x41\x42\x43\x30\x43\x45\x22\x2c\x0a\x22\x54\x24\x09\x63\x20\x23\ -\x39\x36\x42\x32\x43\x33\x22\x2c\x0a\x22\x55\x24\x09\x63\x20\x23\ -\x45\x35\x45\x43\x45\x46\x22\x2c\x0a\x22\x56\x24\x09\x63\x20\x23\ -\x46\x31\x46\x35\x46\x35\x22\x2c\x0a\x22\x57\x24\x09\x63\x20\x23\ -\x38\x42\x38\x34\x41\x35\x22\x2c\x0a\x22\x58\x24\x09\x63\x20\x23\ -\x32\x35\x31\x38\x35\x39\x22\x2c\x0a\x22\x59\x24\x09\x63\x20\x23\ -\x33\x31\x32\x33\x35\x46\x22\x2c\x0a\x22\x5a\x24\x09\x63\x20\x23\ -\x44\x44\x44\x42\x45\x35\x22\x2c\x0a\x22\x60\x24\x09\x63\x20\x23\ -\x35\x30\x34\x35\x37\x39\x22\x2c\x0a\x22\x20\x25\x09\x63\x20\x23\ -\x33\x43\x33\x32\x36\x44\x22\x2c\x0a\x22\x2e\x25\x09\x63\x20\x23\ -\x37\x41\x37\x36\x39\x44\x22\x2c\x0a\x22\x2b\x25\x09\x63\x20\x23\ -\x45\x34\x45\x37\x45\x43\x22\x2c\x0a\x22\x40\x25\x09\x63\x20\x23\ -\x44\x41\x44\x38\x45\x31\x22\x2c\x0a\x22\x23\x25\x09\x63\x20\x23\ -\x34\x43\x34\x31\x37\x37\x22\x2c\x0a\x22\x24\x25\x09\x63\x20\x23\ -\x38\x38\x38\x31\x41\x34\x22\x2c\x0a\x22\x25\x25\x09\x63\x20\x23\ -\x45\x44\x45\x43\x45\x46\x22\x2c\x0a\x22\x26\x25\x09\x63\x20\x23\ -\x44\x34\x44\x32\x44\x44\x22\x2c\x0a\x22\x2a\x25\x09\x63\x20\x23\ 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-\x45\x45\x45\x44\x46\x31\x22\x2c\x0a\x22\x41\x25\x09\x63\x20\x23\ -\x43\x32\x42\x46\x43\x44\x22\x2c\x0a\x22\x42\x25\x09\x63\x20\x23\ -\x37\x33\x36\x43\x39\x34\x22\x2c\x0a\x22\x43\x25\x09\x63\x20\x23\ -\x44\x45\x44\x43\x45\x33\x22\x2c\x0a\x22\x44\x25\x09\x63\x20\x23\ -\x44\x30\x43\x45\x44\x41\x22\x2c\x0a\x22\x45\x25\x09\x63\x20\x23\ -\x42\x33\x41\x46\x43\x34\x22\x2c\x0a\x22\x46\x25\x09\x63\x20\x23\ -\x39\x32\x39\x34\x41\x44\x22\x2c\x0a\x22\x47\x25\x09\x63\x20\x23\ -\x33\x31\x35\x36\x38\x32\x22\x2c\x0a\x22\x48\x25\x09\x63\x20\x23\ -\x34\x31\x37\x36\x39\x43\x22\x2c\x0a\x22\x49\x25\x09\x63\x20\x23\ -\x42\x43\x43\x46\x44\x41\x22\x2c\x0a\x22\x4a\x25\x09\x63\x20\x23\ -\x42\x39\x42\x36\x43\x38\x22\x2c\x0a\x22\x4b\x25\x09\x63\x20\x23\ -\x33\x39\x32\x45\x36\x41\x22\x2c\x0a\x22\x4c\x25\x09\x63\x20\x23\ -\x37\x39\x37\x32\x39\x38\x22\x2c\x0a\x22\x4d\x25\x09\x63\x20\x23\ -\x44\x30\x43\x45\x44\x39\x22\x2c\x0a\x22\x4e\x25\x09\x63\x20\x23\ -\x46\x41\x46\x41\x46\x41\x22\x2c\x0a\x22\x4f\x25\x09\x63\x20\x23\ -\x44\x42\x44\x39\x45\x31\x22\x2c\x0a\x22\x50\x25\x09\x63\x20\x23\ -\x38\x44\x38\x36\x41\x34\x22\x2c\x0a\x22\x51\x25\x09\x63\x20\x23\ -\x41\x44\x41\x39\x43\x30\x22\x2c\x0a\x22\x52\x25\x09\x63\x20\x23\ -\x44\x44\x45\x36\x45\x41\x22\x2c\x0a\x22\x53\x25\x09\x63\x20\x23\ -\x42\x32\x43\x36\x44\x32\x22\x2c\x0a\x22\x54\x25\x09\x63\x20\x23\ -\x38\x46\x41\x43\x42\x46\x22\x2c\x0a\x22\x55\x25\x09\x63\x20\x23\ -\x43\x37\x44\x36\x44\x45\x22\x2c\x0a\x22\x56\x25\x09\x63\x20\x23\ -\x35\x45\x35\x33\x38\x30\x22\x2c\x0a\x22\x57\x25\x09\x63\x20\x23\ -\x32\x46\x32\x33\x36\x30\x22\x2c\x0a\x22\x58\x25\x09\x63\x20\x23\ -\x32\x33\x31\x37\x35\x39\x22\x2c\x0a\x22\x59\x25\x09\x63\x20\x23\ -\x36\x32\x35\x39\x38\x34\x22\x2c\x0a\x22\x5a\x25\x09\x63\x20\x23\ -\x36\x39\x36\x31\x38\x41\x22\x2c\x0a\x22\x60\x25\x09\x63\x20\x23\ -\x35\x45\x35\x38\x38\x36\x22\x2c\x0a\x22\x20\x26\x09\x63\x20\x23\ 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-\x38\x38\x38\x30\x41\x30\x22\x2c\x0a\x22\x29\x26\x09\x63\x20\x23\ -\x38\x39\x38\x31\x41\x31\x22\x2c\x0a\x22\x21\x26\x09\x63\x20\x23\ -\x37\x37\x36\x45\x39\x33\x22\x2c\x0a\x22\x7e\x26\x09\x63\x20\x23\ -\x35\x34\x34\x38\x37\x37\x22\x2c\x0a\x22\x7b\x26\x09\x63\x20\x23\ -\x33\x37\x32\x44\x36\x38\x22\x2c\x0a\x22\x5d\x26\x09\x63\x20\x23\ -\x44\x37\x44\x35\x45\x30\x22\x2c\x0a\x22\x5e\x26\x09\x63\x20\x23\ -\x44\x30\x44\x43\x45\x33\x22\x2c\x0a\x22\x2f\x26\x09\x63\x20\x23\ -\x36\x46\x39\x35\x41\x46\x22\x2c\x0a\x22\x28\x26\x09\x63\x20\x23\ -\x39\x34\x42\x30\x43\x33\x22\x2c\x0a\x22\x5f\x26\x09\x63\x20\x23\ -\x39\x38\x42\x33\x43\x34\x22\x2c\x0a\x22\x3a\x26\x09\x63\x20\x23\ -\x38\x38\x38\x31\x41\x32\x22\x2c\x0a\x22\x3c\x26\x09\x63\x20\x23\ -\x33\x30\x32\x33\x35\x45\x22\x2c\x0a\x22\x5b\x26\x09\x63\x20\x23\ -\x32\x32\x31\x36\x35\x42\x22\x2c\x0a\x22\x7d\x26\x09\x63\x20\x23\ -\x32\x41\x31\x44\x35\x44\x22\x2c\x0a\x22\x7c\x26\x09\x63\x20\x23\ -\x33\x44\x33\x42\x36\x45\x22\x2c\x0a\x22\x31\x26\x09\x63\x20\x23\ -\x32\x44\x35\x34\x38\x31\x22\x2c\x0a\x22\x32\x26\x09\x63\x20\x23\ -\x30\x46\x34\x31\x37\x35\x22\x2c\x0a\x22\x33\x26\x09\x63\x20\x23\ -\x32\x34\x32\x44\x36\x38\x22\x2c\x0a\x22\x34\x26\x09\x63\x20\x23\ -\x33\x38\x32\x43\x36\x35\x22\x2c\x0a\x22\x35\x26\x09\x63\x20\x23\ -\x32\x36\x31\x41\x35\x41\x22\x2c\x0a\x22\x36\x26\x09\x63\x20\x23\ -\x33\x36\x32\x39\x36\x32\x22\x2c\x0a\x22\x37\x26\x09\x63\x20\x23\ -\x45\x34\x45\x41\x45\x45\x22\x2c\x0a\x22\x38\x26\x09\x63\x20\x23\ -\x42\x44\x43\x45\x44\x38\x22\x2c\x0a\x22\x39\x26\x09\x63\x20\x23\ -\x42\x46\x42\x43\x43\x44\x22\x2c\x0a\x22\x30\x26\x09\x63\x20\x23\ -\x32\x46\x32\x34\x36\x32\x22\x2c\x0a\x22\x61\x26\x09\x63\x20\x23\ -\x32\x43\x31\x45\x35\x45\x22\x2c\x0a\x22\x62\x26\x09\x63\x20\x23\ -\x32\x42\x32\x43\x36\x33\x22\x2c\x0a\x22\x63\x26\x09\x63\x20\x23\ -\x31\x39\x34\x30\x37\x33\x22\x2c\x0a\x22\x64\x26\x09\x63\x20\x23\ -\x31\x34\x34\x31\x37\x36\x22\x2c\x0a\x22\x65\x26\x09\x63\x20\x23\ -\x32\x36\x32\x44\x36\x35\x22\x2c\x0a\x22\x66\x26\x09\x63\x20\x23\ -\x41\x34\x39\x46\x42\x38\x22\x2c\x0a\x22\x67\x26\x09\x63\x20\x23\ -\x46\x43\x46\x44\x46\x43\x22\x2c\x0a\x22\x68\x26\x09\x63\x20\x23\ -\x45\x35\x45\x42\x45\x46\x22\x2c\x0a\x22\x69\x26\x09\x63\x20\x23\ -\x36\x41\x36\x32\x38\x44\x22\x2c\x0a\x22\x6a\x26\x09\x63\x20\x23\ -\x32\x35\x32\x41\x36\x35\x22\x2c\x0a\x22\x6b\x26\x09\x63\x20\x23\ -\x31\x34\x34\x30\x37\x33\x22\x2c\x0a\x22\x6c\x26\x09\x63\x20\x23\ -\x32\x32\x32\x37\x36\x34\x22\x2c\x0a\x22\x6d\x26\x09\x63\x20\x23\ -\x32\x45\x32\x30\x35\x43\x22\x2c\x0a\x22\x6e\x26\x09\x63\x20\x23\ -\x35\x32\x34\x39\x37\x44\x22\x2c\x0a\x22\x6f\x26\x09\x63\x20\x23\ -\x45\x34\x45\x42\x45\x45\x22\x2c\x0a\x22\x70\x26\x09\x63\x20\x23\ -\x39\x38\x42\x32\x43\x33\x22\x2c\x0a\x22\x71\x26\x09\x63\x20\x23\ -\x46\x30\x46\x34\x46\x35\x22\x2c\x0a\x22\x72\x26\x09\x63\x20\x23\ -\x42\x34\x42\x31\x43\x35\x22\x2c\x0a\x22\x73\x26\x09\x63\x20\x23\ -\x32\x43\x32\x30\x36\x30\x22\x2c\x0a\x22\x74\x26\x09\x63\x20\x23\ -\x32\x38\x31\x46\x35\x45\x22\x2c\x0a\x22\x75\x26\x09\x63\x20\x23\ -\x32\x34\x32\x32\x36\x30\x22\x2c\x0a\x22\x76\x26\x09\x63\x20\x23\ -\x32\x41\x33\x30\x36\x37\x22\x2c\x0a\x22\x77\x26\x09\x63\x20\x23\ -\x31\x43\x33\x31\x36\x41\x22\x2c\x0a\x22\x78\x26\x09\x63\x20\x23\ -\x31\x30\x33\x46\x37\x34\x22\x2c\x0a\x22\x79\x26\x09\x63\x20\x23\ -\x31\x39\x33\x46\x37\x34\x22\x2c\x0a\x22\x7a\x26\x09\x63\x20\x23\ -\x32\x44\x32\x45\x36\x37\x22\x2c\x0a\x22\x41\x26\x09\x63\x20\x23\ -\x33\x37\x32\x39\x36\x31\x22\x2c\x0a\x22\x42\x26\x09\x63\x20\x23\ -\x32\x42\x31\x45\x35\x43\x22\x2c\x0a\x22\x43\x26\x09\x63\x20\x23\ -\x39\x44\x39\x38\x42\x34\x22\x2c\x0a\x22\x44\x26\x09\x63\x20\x23\ -\x43\x39\x44\x37\x44\x46\x22\x2c\x0a\x22\x45\x26\x09\x63\x20\x23\ -\x36\x35\x38\x44\x41\x39\x22\x2c\x0a\x22\x46\x26\x09\x63\x20\x23\ -\x39\x30\x41\x44\x43\x32\x22\x2c\x0a\x22\x47\x26\x09\x63\x20\x23\ -\x37\x36\x36\x45\x39\x36\x22\x2c\x0a\x22\x48\x26\x09\x63\x20\x23\ -\x32\x32\x31\x37\x35\x41\x22\x2c\x0a\x22\x49\x26\x09\x63\x20\x23\ -\x31\x39\x32\x37\x36\x34\x22\x2c\x0a\x22\x4a\x26\x09\x63\x20\x23\ -\x31\x32\x33\x37\x36\x46\x22\x2c\x0a\x22\x4b\x26\x09\x63\x20\x23\ -\x31\x30\x34\x32\x37\x35\x22\x2c\x0a\x22\x4c\x26\x09\x63\x20\x23\ -\x30\x42\x34\x35\x37\x38\x22\x2c\x0a\x22\x4d\x26\x09\x63\x20\x23\ -\x30\x43\x34\x42\x37\x43\x22\x2c\x0a\x22\x4e\x26\x09\x63\x20\x23\ -\x30\x39\x34\x43\x37\x44\x22\x2c\x0a\x22\x4f\x26\x09\x63\x20\x23\ -\x31\x42\x33\x44\x37\x32\x22\x2c\x0a\x22\x50\x26\x09\x63\x20\x23\ -\x32\x44\x32\x38\x36\x33\x22\x2c\x0a\x22\x51\x26\x09\x63\x20\x23\ -\x33\x31\x32\x33\x36\x30\x22\x2c\x0a\x22\x52\x26\x09\x63\x20\x23\ -\x36\x34\x35\x43\x38\x41\x22\x2c\x0a\x22\x53\x26\x09\x63\x20\x23\ -\x44\x35\x44\x46\x45\x36\x22\x2c\x0a\x22\x54\x26\x09\x63\x20\x23\ -\x41\x45\x43\x32\x43\x46\x22\x2c\x0a\x22\x55\x26\x09\x63\x20\x23\ -\x42\x36\x43\x38\x44\x35\x22\x2c\x0a\x22\x56\x26\x09\x63\x20\x23\ -\x41\x38\x42\x45\x43\x45\x22\x2c\x0a\x22\x57\x26\x09\x63\x20\x23\ -\x39\x43\x41\x36\x42\x44\x22\x2c\x0a\x22\x58\x26\x09\x63\x20\x23\ -\x32\x34\x32\x36\x36\x35\x22\x2c\x0a\x22\x59\x26\x09\x63\x20\x23\ -\x32\x30\x31\x35\x35\x39\x22\x2c\x0a\x22\x5a\x26\x09\x63\x20\x23\ -\x31\x42\x32\x38\x36\x36\x22\x2c\x0a\x22\x60\x26\x09\x63\x20\x23\ -\x30\x45\x34\x35\x37\x41\x22\x2c\x0a\x22\x20\x2a\x09\x63\x20\x23\ -\x30\x38\x34\x42\x37\x45\x22\x2c\x0a\x22\x2e\x2a\x09\x63\x20\x23\ -\x30\x38\x34\x42\x37\x44\x22\x2c\x0a\x22\x2b\x2a\x09\x63\x20\x23\ -\x30\x38\x34\x41\x37\x45\x22\x2c\x0a\x22\x40\x2a\x09\x63\x20\x23\ -\x30\x46\x34\x36\x37\x38\x22\x2c\x0a\x22\x23\x2a\x09\x63\x20\x23\ -\x33\x31\x33\x30\x36\x38\x22\x2c\x0a\x22\x24\x2a\x09\x63\x20\x23\ -\x33\x38\x32\x39\x36\x31\x22\x2c\x0a\x22\x25\x2a\x09\x63\x20\x23\ -\x33\x38\x32\x39\x36\x32\x22\x2c\x0a\x22\x26\x2a\x09\x63\x20\x23\ -\x32\x37\x31\x41\x35\x44\x22\x2c\x0a\x22\x2a\x2a\x09\x63\x20\x23\ -\x33\x43\x33\x32\x36\x43\x22\x2c\x0a\x22\x3d\x2a\x09\x63\x20\x23\ -\x42\x42\x42\x38\x43\x41\x22\x2c\x0a\x22\x2d\x2a\x09\x63\x20\x23\ -\x38\x39\x41\x36\x42\x42\x22\x2c\x0a\x22\x3b\x2a\x09\x63\x20\x23\ -\x43\x39\x44\x38\x45\x30\x22\x2c\x0a\x22\x3e\x2a\x09\x63\x20\x23\ -\x46\x42\x46\x43\x46\x43\x22\x2c\x0a\x22\x2c\x2a\x09\x63\x20\x23\ -\x36\x44\x39\x34\x42\x30\x22\x2c\x0a\x22\x27\x2a\x09\x63\x20\x23\ -\x33\x38\x35\x34\x38\x33\x22\x2c\x0a\x22\x29\x2a\x09\x63\x20\x23\ -\x33\x33\x32\x39\x36\x37\x22\x2c\x0a\x22\x21\x2a\x09\x63\x20\x23\ -\x31\x46\x31\x33\x35\x38\x22\x2c\x0a\x22\x7e\x2a\x09\x63\x20\x23\ -\x32\x36\x31\x39\x35\x43\x22\x2c\x0a\x22\x7b\x2a\x09\x63\x20\x23\ -\x31\x43\x33\x39\x37\x30\x22\x2c\x0a\x22\x5d\x2a\x09\x63\x20\x23\ -\x30\x38\x34\x41\x37\x43\x22\x2c\x0a\x22\x5e\x2a\x09\x63\x20\x23\ -\x30\x41\x34\x44\x37\x46\x22\x2c\x0a\x22\x2f\x2a\x09\x63\x20\x23\ -\x31\x42\x33\x45\x37\x32\x22\x2c\x0a\x22\x28\x2a\x09\x63\x20\x23\ -\x33\x33\x32\x34\x36\x30\x22\x2c\x0a\x22\x5f\x2a\x09\x63\x20\x23\ -\x33\x32\x32\x34\x36\x31\x22\x2c\x0a\x22\x3a\x2a\x09\x63\x20\x23\ -\x33\x31\x32\x34\x36\x30\x22\x2c\x0a\x22\x3c\x2a\x09\x63\x20\x23\ -\x32\x31\x31\x36\x35\x39\x22\x2c\x0a\x22\x5b\x2a\x09\x63\x20\x23\ -\x39\x41\x39\x35\x42\x31\x22\x2c\x0a\x22\x7d\x2a\x09\x63\x20\x23\ -\x43\x35\x44\x34\x44\x45\x22\x2c\x0a\x22\x7c\x2a\x09\x63\x20\x23\ -\x37\x45\x39\x45\x42\x36\x22\x2c\x0a\x22\x31\x2a\x09\x63\x20\x23\ -\x39\x36\x42\x32\x43\x34\x22\x2c\x0a\x22\x32\x2a\x09\x63\x20\x23\ -\x41\x39\x43\x30\x43\x46\x22\x2c\x0a\x22\x33\x2a\x09\x63\x20\x23\ -\x33\x34\x36\x42\x39\x32\x22\x2c\x0a\x22\x34\x2a\x09\x63\x20\x23\ -\x39\x44\x42\x36\x43\x38\x22\x2c\x0a\x22\x35\x2a\x09\x63\x20\x23\ -\x39\x43\x39\x37\x42\x33\x22\x2c\x0a\x22\x36\x2a\x09\x63\x20\x23\ -\x32\x39\x31\x45\x35\x44\x22\x2c\x0a\x22\x37\x2a\x09\x63\x20\x23\ -\x31\x46\x31\x36\x35\x41\x22\x2c\x0a\x22\x38\x2a\x09\x63\x20\x23\ -\x31\x39\x32\x42\x36\x37\x22\x2c\x0a\x22\x39\x2a\x09\x63\x20\x23\ -\x31\x30\x34\x33\x37\x36\x22\x2c\x0a\x22\x30\x2a\x09\x63\x20\x23\ -\x30\x44\x34\x32\x37\x37\x22\x2c\x0a\x22\x61\x2a\x09\x63\x20\x23\ -\x30\x41\x34\x42\x37\x44\x22\x2c\x0a\x22\x62\x2a\x09\x63\x20\x23\ -\x32\x36\x33\x33\x36\x41\x22\x2c\x0a\x22\x63\x2a\x09\x63\x20\x23\ -\x33\x35\x32\x36\x36\x30\x22\x2c\x0a\x22\x64\x2a\x09\x63\x20\x23\ -\x33\x30\x32\x31\x35\x45\x22\x2c\x0a\x22\x65\x2a\x09\x63\x20\x23\ -\x38\x46\x38\x38\x41\x41\x22\x2c\x0a\x22\x66\x2a\x09\x63\x20\x23\ -\x46\x45\x46\x44\x46\x44\x22\x2c\x0a\x22\x67\x2a\x09\x63\x20\x23\ -\x41\x35\x42\x42\x43\x41\x22\x2c\x0a\x22\x68\x2a\x09\x63\x20\x23\ -\x42\x45\x43\x46\x44\x39\x22\x2c\x0a\x22\x69\x2a\x09\x63\x20\x23\ -\x45\x39\x45\x46\x46\x30\x22\x2c\x0a\x22\x6a\x2a\x09\x63\x20\x23\ -\x41\x32\x42\x42\x43\x41\x22\x2c\x0a\x22\x6b\x2a\x09\x63\x20\x23\ -\x32\x41\x36\x34\x38\x44\x22\x2c\x0a\x22\x6c\x2a\x09\x63\x20\x23\ -\x43\x45\x44\x41\x45\x34\x22\x2c\x0a\x22\x6d\x2a\x09\x63\x20\x23\ -\x46\x44\x46\x44\x46\x43\x22\x2c\x0a\x22\x6e\x2a\x09\x63\x20\x23\ -\x39\x39\x39\x34\x42\x30\x22\x2c\x0a\x22\x6f\x2a\x09\x63\x20\x23\ -\x33\x32\x32\x36\x36\x35\x22\x2c\x0a\x22\x70\x2a\x09\x63\x20\x23\ -\x31\x42\x32\x32\x36\x31\x22\x2c\x0a\x22\x71\x2a\x09\x63\x20\x23\ -\x31\x30\x33\x36\x36\x46\x22\x2c\x0a\x22\x72\x2a\x09\x63\x20\x23\ -\x30\x43\x34\x35\x37\x38\x22\x2c\x0a\x22\x73\x2a\x09\x63\x20\x23\ -\x31\x39\x33\x35\x36\x45\x22\x2c\x0a\x22\x74\x2a\x09\x63\x20\x23\ -\x32\x32\x32\x30\x35\x46\x22\x2c\x0a\x22\x75\x2a\x09\x63\x20\x23\ -\x31\x36\x33\x35\x36\x45\x22\x2c\x0a\x22\x76\x2a\x09\x63\x20\x23\ -\x31\x30\x34\x34\x37\x37\x22\x2c\x0a\x22\x77\x2a\x09\x63\x20\x23\ -\x32\x44\x32\x37\x36\x32\x22\x2c\x0a\x22\x78\x2a\x09\x63\x20\x23\ -\x33\x31\x32\x32\x35\x46\x22\x2c\x0a\x22\x79\x2a\x09\x63\x20\x23\ -\x38\x42\x38\x35\x41\x36\x22\x2c\x0a\x22\x7a\x2a\x09\x63\x20\x23\ -\x41\x46\x43\x33\x44\x30\x22\x2c\x0a\x22\x41\x2a\x09\x63\x20\x23\ -\x39\x37\x42\x32\x43\x34\x22\x2c\x0a\x22\x42\x2a\x09\x63\x20\x23\ -\x39\x36\x42\x31\x43\x33\x22\x2c\x0a\x22\x43\x2a\x09\x63\x20\x23\ -\x39\x44\x42\x37\x43\x38\x22\x2c\x0a\x22\x44\x2a\x09\x63\x20\x23\ -\x32\x39\x36\x33\x38\x42\x22\x2c\x0a\x22\x45\x2a\x09\x63\x20\x23\ -\x42\x41\x43\x44\x44\x38\x22\x2c\x0a\x22\x46\x2a\x09\x63\x20\x23\ -\x45\x42\x46\x30\x46\x32\x22\x2c\x0a\x22\x47\x2a\x09\x63\x20\x23\ -\x34\x36\x36\x37\x39\x30\x22\x2c\x0a\x22\x48\x2a\x09\x63\x20\x23\ -\x31\x31\x34\x38\x37\x42\x22\x2c\x0a\x22\x49\x2a\x09\x63\x20\x23\ -\x30\x46\x33\x41\x37\x31\x22\x2c\x0a\x22\x4a\x2a\x09\x63\x20\x23\ -\x31\x41\x32\x36\x36\x35\x22\x2c\x0a\x22\x4b\x2a\x09\x63\x20\x23\ -\x32\x36\x32\x31\x35\x46\x22\x2c\x0a\x22\x4c\x2a\x09\x63\x20\x23\ -\x32\x30\x32\x41\x36\x35\x22\x2c\x0a\x22\x4d\x2a\x09\x63\x20\x23\ -\x32\x43\x32\x30\x35\x45\x22\x2c\x0a\x22\x4e\x2a\x09\x63\x20\x23\ -\x39\x36\x39\x30\x41\x45\x22\x2c\x0a\x22\x4f\x2a\x09\x63\x20\x23\ -\x45\x42\x46\x30\x46\x31\x22\x2c\x0a\x22\x50\x2a\x09\x63\x20\x23\ -\x42\x35\x43\x38\x44\x33\x22\x2c\x0a\x22\x51\x2a\x09\x63\x20\x23\ -\x41\x32\x42\x41\x43\x39\x22\x2c\x0a\x22\x52\x2a\x09\x63\x20\x23\ -\x39\x32\x41\x45\x43\x31\x22\x2c\x0a\x22\x53\x2a\x09\x63\x20\x23\ -\x46\x30\x46\x33\x46\x34\x22\x2c\x0a\x22\x54\x2a\x09\x63\x20\x23\ -\x42\x36\x43\x41\x44\x36\x22\x2c\x0a\x22\x55\x2a\x09\x63\x20\x23\ -\x33\x32\x36\x38\x39\x30\x22\x2c\x0a\x22\x56\x2a\x09\x63\x20\x23\ -\x33\x38\x36\x44\x39\x33\x22\x2c\x0a\x22\x57\x2a\x09\x63\x20\x23\ -\x32\x39\x36\x32\x38\x42\x22\x2c\x0a\x22\x58\x2a\x09\x63\x20\x23\ -\x35\x31\x37\x46\x41\x30\x22\x2c\x0a\x22\x59\x2a\x09\x63\x20\x23\ -\x38\x36\x39\x44\x42\x36\x22\x2c\x0a\x22\x5a\x2a\x09\x63\x20\x23\ -\x36\x35\x36\x32\x38\x44\x22\x2c\x0a\x22\x60\x2a\x09\x63\x20\x23\ -\x33\x30\x32\x34\x36\x30\x22\x2c\x0a\x22\x20\x3d\x09\x63\x20\x23\ -\x35\x41\x35\x31\x38\x30\x22\x2c\x0a\x22\x2e\x3d\x09\x63\x20\x23\ -\x44\x45\x45\x36\x45\x41\x22\x2c\x0a\x22\x2b\x3d\x09\x63\x20\x23\ -\x41\x46\x43\x35\x44\x32\x22\x2c\x0a\x22\x40\x3d\x09\x63\x20\x23\ -\x38\x46\x41\x41\x42\x44\x22\x2c\x0a\x22\x23\x3d\x09\x63\x20\x23\ -\x33\x44\x36\x46\x39\x33\x22\x2c\x0a\x22\x24\x3d\x09\x63\x20\x23\ -\x42\x33\x43\x37\x44\x34\x22\x2c\x0a\x22\x25\x3d\x09\x63\x20\x23\ -\x41\x31\x42\x39\x43\x41\x22\x2c\x0a\x22\x26\x3d\x09\x63\x20\x23\ -\x43\x33\x44\x33\x44\x44\x22\x2c\x0a\x22\x2a\x3d\x09\x63\x20\x23\ -\x46\x30\x46\x33\x46\x35\x22\x2c\x0a\x22\x3d\x3d\x09\x63\x20\x23\ -\x44\x45\x45\x31\x45\x36\x22\x2c\x0a\x22\x2d\x3d\x09\x63\x20\x23\ -\x39\x43\x39\x36\x42\x32\x22\x2c\x0a\x22\x3b\x3d\x09\x63\x20\x23\ -\x34\x46\x34\x35\x37\x41\x22\x2c\x0a\x22\x3e\x3d\x09\x63\x20\x23\ -\x34\x30\x33\x35\x36\x45\x22\x2c\x0a\x22\x2c\x3d\x09\x63\x20\x23\ -\x38\x45\x38\x38\x41\x38\x22\x2c\x0a\x22\x27\x3d\x09\x63\x20\x23\ -\x45\x30\x44\x46\x45\x35\x22\x2c\x0a\x22\x29\x3d\x09\x63\x20\x23\ -\x46\x41\x46\x42\x46\x41\x22\x2c\x0a\x22\x21\x3d\x09\x63\x20\x23\ -\x46\x32\x46\x36\x46\x36\x22\x2c\x0a\x22\x7e\x3d\x09\x63\x20\x23\ -\x37\x43\x39\x46\x42\x37\x22\x2c\x0a\x22\x7b\x3d\x09\x63\x20\x23\ -\x42\x42\x43\x44\x44\x37\x22\x2c\x0a\x22\x5d\x3d\x09\x63\x20\x23\ -\x43\x32\x44\x31\x44\x42\x22\x2c\x0a\x22\x5e\x3d\x09\x63\x20\x23\ -\x41\x34\x42\x43\x43\x43\x22\x2c\x0a\x22\x2f\x3d\x09\x63\x20\x23\ -\x38\x34\x41\x33\x42\x39\x22\x2c\x0a\x22\x28\x3d\x09\x63\x20\x23\ -\x43\x31\x44\x32\x44\x43\x22\x2c\x0a\x22\x5f\x3d\x09\x63\x20\x23\ -\x44\x45\x44\x44\x45\x35\x22\x2c\x0a\x22\x3a\x3d\x09\x63\x20\x23\ -\x39\x44\x39\x38\x42\x33\x22\x2c\x0a\x22\x3c\x3d\x09\x63\x20\x23\ -\x35\x44\x35\x34\x38\x33\x22\x2c\x0a\x22\x5b\x3d\x09\x63\x20\x23\ -\x33\x35\x32\x39\x36\x33\x22\x2c\x0a\x22\x7d\x3d\x09\x63\x20\x23\ -\x33\x36\x32\x37\x36\x31\x22\x2c\x0a\x22\x7c\x3d\x09\x63\x20\x23\ -\x35\x30\x34\x36\x37\x39\x22\x2c\x0a\x22\x31\x3d\x09\x63\x20\x23\ -\x39\x32\x38\x44\x41\x42\x22\x2c\x0a\x22\x32\x3d\x09\x63\x20\x23\ -\x44\x35\x44\x33\x44\x44\x22\x2c\x0a\x22\x33\x3d\x09\x63\x20\x23\ -\x44\x38\x45\x33\x45\x38\x22\x2c\x0a\x22\x34\x3d\x09\x63\x20\x23\ -\x39\x31\x41\x45\x43\x31\x22\x2c\x0a\x22\x35\x3d\x09\x63\x20\x23\ -\x38\x37\x41\x36\x42\x41\x22\x2c\x0a\x22\x36\x3d\x09\x63\x20\x23\ -\x44\x46\x45\x36\x45\x39\x22\x2c\x0a\x22\x37\x3d\x09\x63\x20\x23\ -\x37\x32\x39\x36\x42\x30\x22\x2c\x0a\x22\x38\x3d\x09\x63\x20\x23\ -\x37\x34\x39\x37\x42\x30\x22\x2c\x0a\x22\x39\x3d\x09\x63\x20\x23\ -\x39\x42\x42\x34\x43\x34\x22\x2c\x0a\x22\x30\x3d\x09\x63\x20\x23\ -\x39\x34\x42\x30\x43\x32\x22\x2c\x0a\x22\x61\x3d\x09\x63\x20\x23\ -\x42\x39\x43\x41\x44\x35\x22\x2c\x0a\x22\x62\x3d\x09\x63\x20\x23\ -\x39\x32\x41\x45\x43\x32\x22\x2c\x0a\x22\x63\x3d\x09\x63\x20\x23\ -\x42\x34\x43\x37\x44\x33\x22\x2c\x0a\x22\x64\x3d\x09\x63\x20\x23\ -\x46\x36\x46\x38\x46\x37\x22\x2c\x0a\x22\x65\x3d\x09\x63\x20\x23\ -\x45\x35\x45\x38\x45\x42\x22\x2c\x0a\x22\x66\x3d\x09\x63\x20\x23\ -\x43\x37\x43\x34\x44\x33\x22\x2c\x0a\x22\x67\x3d\x09\x63\x20\x23\ -\x37\x30\x36\x39\x39\x32\x22\x2c\x0a\x22\x68\x3d\x09\x63\x20\x23\ -\x35\x31\x34\x37\x37\x41\x22\x2c\x0a\x22\x69\x3d\x09\x63\x20\x23\ -\x33\x37\x32\x43\x36\x38\x22\x2c\x0a\x22\x6a\x3d\x09\x63\x20\x23\ -\x33\x34\x32\x39\x36\x37\x22\x2c\x0a\x22\x6b\x3d\x09\x63\x20\x23\ -\x33\x44\x33\x32\x36\x44\x22\x2c\x0a\x22\x6c\x3d\x09\x63\x20\x23\ -\x34\x43\x34\x32\x37\x38\x22\x2c\x0a\x22\x6d\x3d\x09\x63\x20\x23\ -\x36\x37\x35\x46\x38\x42\x22\x2c\x0a\x22\x6e\x3d\x09\x63\x20\x23\ -\x39\x34\x38\x44\x41\x45\x22\x2c\x0a\x22\x6f\x3d\x09\x63\x20\x23\ -\x43\x32\x42\x46\x43\x46\x22\x2c\x0a\x22\x70\x3d\x09\x63\x20\x23\ -\x45\x42\x45\x42\x45\x45\x22\x2c\x0a\x22\x71\x3d\x09\x63\x20\x23\ -\x43\x45\x44\x41\x45\x31\x22\x2c\x0a\x22\x72\x3d\x09\x63\x20\x23\ -\x41\x44\x43\x32\x44\x30\x22\x2c\x0a\x22\x73\x3d\x09\x63\x20\x23\ -\x41\x35\x42\x43\x43\x41\x22\x2c\x0a\x22\x74\x3d\x09\x63\x20\x23\ -\x36\x41\x39\x30\x41\x42\x22\x2c\x0a\x22\x75\x3d\x09\x63\x20\x23\ -\x37\x38\x39\x42\x42\x33\x22\x2c\x0a\x22\x76\x3d\x09\x63\x20\x23\ -\x42\x38\x43\x39\x44\x34\x22\x2c\x0a\x22\x77\x3d\x09\x63\x20\x23\ -\x41\x42\x43\x30\x43\x46\x22\x2c\x0a\x22\x78\x3d\x09\x63\x20\x23\ -\x39\x32\x42\x30\x43\x33\x22\x2c\x0a\x22\x79\x3d\x09\x63\x20\x23\ -\x39\x45\x42\x37\x43\x37\x22\x2c\x0a\x22\x7a\x3d\x09\x63\x20\x23\ -\x41\x35\x42\x43\x43\x42\x22\x2c\x0a\x22\x41\x3d\x09\x63\x20\x23\ -\x38\x42\x41\x39\x42\x46\x22\x2c\x0a\x22\x42\x3d\x09\x63\x20\x23\ -\x41\x44\x43\x31\x43\x45\x22\x2c\x0a\x22\x43\x3d\x09\x63\x20\x23\ -\x41\x36\x42\x44\x43\x43\x22\x2c\x0a\x22\x44\x3d\x09\x63\x20\x23\ 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-\x9c\x73\xc5\x30\xc6\xac\x8d\x31\xce\x8f\xcd\x66\xe3\x46\xa3\x91\ -\x3b\x9d\x4e\x2e\xc8\x7f\x19\x63\x7a\xe1\x75\xf7\x8c\xd2\xee\x1d\ -\xf9\x24\x7e\xac\x92\x73\x54\xb5\xf2\x21\xc1\x34\x4a\x20\x95\xd0\ -\x0d\xac\x11\x02\x10\x9d\xd7\xf3\x9a\x3d\xb4\x26\xb5\x6b\x74\x1d\ -\x52\xbf\x96\x3f\x3e\xce\x37\xdf\x3b\x90\x39\x92\x00\x00\x00\x00\ -\x49\x45\x4e\x44\xae\x42\x60\x82\ -" - -qt_resource_name = b"\ -\x00\x05\ -\x00\x6f\xa6\x53\ -\x00\x69\ -\x00\x63\x00\x6f\x00\x6e\x00\x73\ -\x00\x06\ -\x07\x03\x7d\xc3\ -\x00\x69\ -\x00\x6d\x00\x61\x00\x67\x00\x65\x00\x73\ -\x00\x05\ -\x00\x6d\xc5\xf4\ -\x00\x67\ -\x00\x65\x00\x6f\x00\x69\x00\x64\ -\x00\x0c\ -\x02\xc1\xfc\xc7\ -\x00\x6e\ -\x00\x65\x00\x77\x00\x5f\x00\x66\x00\x69\x00\x6c\x00\x65\x00\x2e\x00\x70\x00\x6e\x00\x67\ -\x00\x07\ -\x0e\x88\xd0\x79\ -\x00\x67\ -\x00\x72\x00\x61\x00\x76\x00\x69\x00\x74\x00\x79\ -\x00\x0c\ -\x0b\x2e\x2d\xfe\ -\x00\x63\ -\x00\x68\x00\x65\x00\x76\x00\x72\x00\x6f\x00\x6e\x00\x2d\x00\x64\x00\x6f\x00\x77\x00\x6e\ 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-\x00\x69\x00\x72\x00\x62\x00\x6f\x00\x72\x00\x6e\x00\x65\ -\x00\x0d\ -\x02\x91\x4e\x94\ -\x00\x63\ -\x00\x68\x00\x65\x00\x76\x00\x72\x00\x6f\x00\x6e\x00\x2d\x00\x72\x00\x69\x00\x67\x00\x68\x00\x74\ -" - -qt_resource_struct_v1 = b"\ -\x00\x00\x00\x00\x00\x02\x00\x00\x00\x02\x00\x00\x00\x01\ -\x00\x00\x00\x00\x00\x02\x00\x00\x00\x0c\x00\x00\x00\x04\ -\x00\x00\x00\x10\x00\x02\x00\x00\x00\x01\x00\x00\x00\x03\ -\x00\x00\x00\x22\x00\x00\x00\x00\x00\x01\x00\x00\x00\x00\ -\x00\x00\x00\xba\x00\x00\x00\x00\x00\x01\x00\x02\x04\xc6\ -\x00\x00\x00\xc6\x00\x00\x00\x00\x00\x01\x00\x02\x54\xf5\ -\x00\x00\x01\x50\x00\x00\x00\x00\x00\x01\x00\x02\x5c\x0c\ -\x00\x00\x01\x66\x00\x00\x00\x00\x00\x01\x00\x02\x5d\xee\ -\x00\x00\x00\x32\x00\x00\x00\x00\x00\x01\x00\x01\xf7\x03\ -\x00\x00\x01\x2c\x00\x00\x00\x00\x00\x01\x00\x02\x5a\x7b\ -\x00\x00\x00\x82\x00\x00\x00\x00\x00\x01\x00\x01\xfe\x8a\ -\x00\x00\x00\xa8\x00\x00\x00\x00\x00\x01\x00\x02\x00\xf5\ -\x00\x00\x00\x64\x00\x00\x00\x00\x00\x01\x00\x01\xfc\x38\ -\x00\x00\x00\xd2\x00\x00\x00\x00\x00\x01\x00\x02\x58\x2c\ -\x00\x00\x00\x50\x00\x00\x00\x00\x00\x01\x00\x01\xf9\xd5\ -\x00\x00\x00\xf8\x00\x00\x00\x00\x00\x01\x00\x02\x59\x13\ -" - -qt_resource_struct_v2 = b"\ -\x00\x00\x00\x00\x00\x02\x00\x00\x00\x02\x00\x00\x00\x01\ -\x00\x00\x00\x00\x00\x00\x00\x00\ -\x00\x00\x00\x00\x00\x02\x00\x00\x00\x0c\x00\x00\x00\x04\ -\x00\x00\x00\x00\x00\x00\x00\x00\ -\x00\x00\x00\x10\x00\x02\x00\x00\x00\x01\x00\x00\x00\x03\ -\x00\x00\x00\x00\x00\x00\x00\x00\ -\x00\x00\x00\x22\x00\x00\x00\x00\x00\x01\x00\x00\x00\x00\ -\x00\x00\x01\x5e\x83\x6e\x67\x9a\ -\x00\x00\x00\xba\x00\x00\x00\x00\x00\x01\x00\x02\x04\xc6\ -\x00\x00\x01\x5e\x83\x6e\x67\x9a\ -\x00\x00\x00\xc6\x00\x00\x00\x00\x00\x01\x00\x02\x54\xf5\ -\x00\x00\x01\x60\xa3\x86\xd3\x93\ -\x00\x00\x01\x50\x00\x00\x00\x00\x00\x01\x00\x02\x5c\x0c\ -\x00\x00\x01\x5e\x83\x6e\x67\x9a\ -\x00\x00\x01\x66\x00\x00\x00\x00\x00\x01\x00\x02\x5d\xee\ -\x00\x00\x01\x60\xa3\x92\xc3\xde\ -\x00\x00\x00\x32\x00\x00\x00\x00\x00\x01\x00\x01\xf7\x03\ -\x00\x00\x01\x5f\x70\xb4\xad\x15\ -\x00\x00\x01\x2c\x00\x00\x00\x00\x00\x01\x00\x02\x5a\x7b\ -\x00\x00\x01\x5f\x70\xb4\xad\x06\ -\x00\x00\x00\x82\x00\x00\x00\x00\x00\x01\x00\x01\xfe\x8a\ -\x00\x00\x01\x5f\x70\xb4\xad\x06\ -\x00\x00\x00\xa8\x00\x00\x00\x00\x00\x01\x00\x02\x00\xf5\ -\x00\x00\x01\x5e\x83\x6e\x67\x9a\ -\x00\x00\x00\x64\x00\x00\x00\x00\x00\x01\x00\x01\xfc\x38\ -\x00\x00\x01\x60\xa3\x92\xd3\xfc\ -\x00\x00\x00\xd2\x00\x00\x00\x00\x00\x01\x00\x02\x58\x2c\ -\x00\x00\x01\x5f\x70\xb4\xad\x15\ -\x00\x00\x00\x50\x00\x00\x00\x00\x00\x01\x00\x01\xf9\xd5\ -\x00\x00\x01\x60\xa3\x87\x69\x88\ -\x00\x00\x00\xf8\x00\x00\x00\x00\x00\x01\x00\x02\x59\x13\ -\x00\x00\x01\x5b\xd3\x8f\x2f\x20\ -" - -qt_version = QtCore.qVersion().split('.') -if qt_version < ['5', '8', '0']: - rcc_version = 1 - qt_resource_struct = qt_resource_struct_v1 -else: - rcc_version = 2 - qt_resource_struct = qt_resource_struct_v2 - -def qInitResources(): - QtCore.qRegisterResourceData(rcc_version, qt_resource_struct, qt_resource_name, qt_resource_data) - -def qCleanupResources(): - QtCore.qUnregisterResourceData(rcc_version, qt_resource_struct, qt_resource_name, qt_resource_data) - -qInitResources() diff --git a/utils/build_uic.py b/utils/build_uic.py index 0c48d0c..84e562c 100644 --- a/utils/build_uic.py +++ b/utils/build_uic.py @@ -1,11 +1,62 @@ -# coding: utf-8 +# -*- coding: utf-8 -*- -import sys +from pathlib import Path from PyQt5.uic import compileUiDir +from PyQt5.pyrcc_main import processResourceFile -"""Simple Qt build utility to compile all .ui files into Python modules.""" +import dgp + +""" +Utility script to build python compiled UI and resource files from Qt .ui and +.qrc files. + +See Also +-------- + +`Qt 5 Resource System `__ + +`Qt 5 Resource Compiler (RCC) `__ + +`PyQt5 Resource System `__ + + +""" +BASE_DIR = Path(dgp.__path__[0]) +RES_FILES = [ + str(BASE_DIR.joinpath('gui/ui/resources/resources.qrc')) +] +RES_DEST = str(BASE_DIR.joinpath('resources_rc.py')) +UI_DIR = str(BASE_DIR.joinpath('gui/ui')) + + +def compile_ui(ui_directory, resource_files, resource_dest, base_module='dgp', + resource_suffix='_rc') -> None: + """Compile Qt .ui and .qrc files into .py files for direct import. + + Parameters + ---------- + ui_directory : str + String path to directory containing .ui files to compile + resource_files : List of str + List of string paths to Qt resource .qrc files to compile + resource_dest : str + Destination path/name for the compiled resource file + base_module : str, optional + Module name which .ui files will import the compiled resources_rc.py + file from. Default is to import from the root 'dgp' module + resource_suffix : str, optional + Optional suffix used by ui files to load resources. Default is '_rc' + + Notes + ----- + Compiled .ui files are output to the same directory as their source + + """ + processResourceFile(resource_files, resource_dest, None) + compileUiDir(ui_directory, from_imports=True, import_from=base_module, + resource_suffix=resource_suffix) if __name__ == '__main__': - compileUiDir(sys.argv[1], indent=4, from_imports=True, import_from='dgp') + compile_ui(UI_DIR, RES_FILES, RES_DEST) From 04c5b98a0886714ef3c0b5f41c7e33051819e0be Mon Sep 17 00:00:00 2001 From: Zachery Brady Date: Wed, 1 Aug 2018 14:10:10 -0600 Subject: [PATCH 169/236] Fix path resolution in build_uic script. --- utils/build_uic.py | 4 +--- 1 file changed, 1 insertion(+), 3 deletions(-) diff --git a/utils/build_uic.py b/utils/build_uic.py index 84e562c..1ba93e4 100644 --- a/utils/build_uic.py +++ b/utils/build_uic.py @@ -1,11 +1,9 @@ # -*- coding: utf-8 -*- - from pathlib import Path from PyQt5.uic import compileUiDir from PyQt5.pyrcc_main import processResourceFile -import dgp """ Utility script to build python compiled UI and resource files from Qt .ui and @@ -22,7 +20,7 @@ """ -BASE_DIR = Path(dgp.__path__[0]) +BASE_DIR = Path(Path(__file__).parent).joinpath('../dgp').absolute() RES_FILES = [ str(BASE_DIR.joinpath('gui/ui/resources/resources.qrc')) ] From 8bccfcb6d7e4de540ef835a95e0921b667207142 Mon Sep 17 00:00:00 2001 From: Zachery Brady Date: Wed, 1 Aug 2018 14:40:27 -0600 Subject: [PATCH 170/236] Test cleanup/refactoring. Remove context.py, moving (test) QApplication setup into pytest conftest.py Added global fixture to provide handle to the QApplication instance for use in test-cases. Removed all references to 'from context import dgp'. This was superfluous anyways as we insert the DGP module path into the system path. --- tests/conftest.py | 44 +++++++++++++++++++++++++++++-- tests/context.py | 31 ---------------------- tests/test_controllers.py | 1 - tests/test_dialogs.py | 1 - tests/test_etc.py | 1 - tests/test_gravity_ingestor.py | 1 - tests/test_loader.py | 9 +++---- tests/test_time_utils.py | 1 - tests/test_timesync.py | 1 - tests/test_trajectory_ingestor.py | 1 - tests/test_workspaces.py | 1 - 11 files changed, 46 insertions(+), 46 deletions(-) delete mode 100644 tests/context.py diff --git a/tests/conftest.py b/tests/conftest.py index b1287d6..20b863c 100644 --- a/tests/conftest.py +++ b/tests/conftest.py @@ -1,9 +1,14 @@ # -*- coding: utf-8 -*- +import os +import sys +import traceback from datetime import datetime from pathlib import Path import pandas as pd import pytest +from PyQt5 import QtCore +from PyQt5.QtWidgets import QApplication from dgp.core.controllers.project_controllers import AirborneProjectController from dgp.core.hdf5_manager import HDF5_NAME @@ -16,14 +21,49 @@ from dgp.lib.gravity_ingestor import read_at1a from dgp.lib.trajectory_ingestor import import_trajectory -# Import QApplication object for any Qt GUI test cases -from .context import APP +sys.path.insert(0, os.path.abspath(os.path.join(os.path.dirname(__file__), '..'))) + +"""Global pytest configuration file for DGP test suite. + +This takes care of configuring a QApplication instance for executing tests +against UI code which requires an event loop (signals etc). +If a handle to the QApplication is required, e.g. to use as the parent to a test +object, the qt_app fixture can be used. + +The sys.excepthook is also replaced to enable catching of some critical errors +raised within the Qt domain that would otherwise not be printed. + +""" + + +def excepthook(type_, value, traceback_): + """This allows IDE to properly display unhandled exceptions which are + otherwise silently ignored as the application is terminated. + Override default excepthook with + >>> sys.excepthook = excepthook + + See Also + -------- + + http://pyqt.sourceforge.net/Docs/PyQt5/incompatibilities.html + """ + traceback.print_exception(type_, value, traceback_) + QtCore.qFatal('') + + +sys.excepthook = excepthook +APP = QApplication([]) def get_ts(offset=0): return datetime.now().timestamp() + offset +@pytest.fixture(scope='module') +def qt_app(): + return APP + + @pytest.fixture() def project_factory(): def _factory(name, path, flights=2, dataset=True): diff --git a/tests/context.py b/tests/context.py deleted file mode 100644 index 375a213..0000000 --- a/tests/context.py +++ /dev/null @@ -1,31 +0,0 @@ -# coding: utf-8 - -import os -import sys -import traceback -import pytest -from PyQt5 import QtCore -# from PyQt5.Qt import QApplication -from PyQt5.QtWidgets import QApplication - -sys.path.insert(0, os.path.abspath(os.path.join(os.path.dirname(__file__), '..'))) - -# Import dgp making the project available to test suite by relative import of this file -# e.g. from .context import dgp -import dgp - - -def excepthook(type_, value, traceback_): - """This allows IDE to properly display unhandled exceptions which are - otherwise silently ignored as the application is terminated. - Override default excepthook with - >>> sys.excepthook = excepthook - - See: http://pyqt.sourceforge.net/Docs/PyQt5/incompatibilities.html - """ - traceback.print_exception(type_, value, traceback_) - QtCore.qFatal('') - - -sys.excepthook = excepthook -APP = QApplication([]) diff --git a/tests/test_controllers.py b/tests/test_controllers.py index 9971412..47fb59f 100644 --- a/tests/test_controllers.py +++ b/tests/test_controllers.py @@ -23,7 +23,6 @@ from dgp.core.models.datafile import DataFile from dgp.core.controllers.flight_controller import FlightController from dgp.core.models.flight import Flight -from .context import APP def test_attribute_proxy(tmpdir): diff --git a/tests/test_dialogs.py b/tests/test_dialogs.py index e9aef1c..f68670c 100644 --- a/tests/test_dialogs.py +++ b/tests/test_dialogs.py @@ -24,7 +24,6 @@ from dgp.gui.dialogs.create_project_dialog import CreateProjectDialog from dgp.gui.dialogs.dialog_mixins import FormValidator from dgp.gui.dialogs.custom_validators import FileExistsValidator, DirectoryValidator -from .context import APP @pytest.fixture diff --git a/tests/test_etc.py b/tests/test_etc.py index a27de8c..cf8f0cd 100644 --- a/tests/test_etc.py +++ b/tests/test_etc.py @@ -1,4 +1,3 @@ -from .context import dgp import unittest import numpy as np import pandas as pd diff --git a/tests/test_gravity_ingestor.py b/tests/test_gravity_ingestor.py index f353d69..7fe6a44 100644 --- a/tests/test_gravity_ingestor.py +++ b/tests/test_gravity_ingestor.py @@ -6,7 +6,6 @@ import numpy as np import datetime -from .context import dgp from dgp.lib import gravity_ingestor as gi diff --git a/tests/test_loader.py b/tests/test_loader.py index 17a554c..3e8b245 100644 --- a/tests/test_loader.py +++ b/tests/test_loader.py @@ -7,7 +7,6 @@ from PyQt5.QtTest import QSignalSpy from pandas import DataFrame -from .context import APP from dgp.core.file_loader import FileLoader @@ -23,8 +22,8 @@ def mock_failing_loader(*args, **kwargs): raise FileNotFoundError -def test_load_mock(): - loader = FileLoader(Path(TEST_FILE_GRAV), mock_loader, APP) +def test_load_mock(qt_app): + loader = FileLoader(Path(TEST_FILE_GRAV), mock_loader, qt_app) spy_complete = QSignalSpy(loader.loaded) spy_error = QSignalSpy(loader.error) @@ -38,7 +37,7 @@ def test_load_mock(): assert 0 == len(spy_error) -def test_load_failure(): +def test_load_failure(qt_app): called = False def _error_handler(exception: Exception): @@ -46,7 +45,7 @@ def _error_handler(exception: Exception): nonlocal called called = True - loader = FileLoader(Path(), mock_failing_loader, APP) + loader = FileLoader(Path(), mock_failing_loader, qt_app) loader.error.connect(_error_handler) spy_err = QSignalSpy(loader.error) assert 0 == len(spy_err) diff --git a/tests/test_time_utils.py b/tests/test_time_utils.py index 957cddf..ca50787 100644 --- a/tests/test_time_utils.py +++ b/tests/test_time_utils.py @@ -4,7 +4,6 @@ from datetime import datetime import pandas as pd -from .context import dgp from dgp.lib import time_utils as tu class TestTimeUtils(unittest.TestCase): diff --git a/tests/test_timesync.py b/tests/test_timesync.py index 854bfa2..2f5a030 100644 --- a/tests/test_timesync.py +++ b/tests/test_timesync.py @@ -1,6 +1,5 @@ # coding: utf-8 -from .context import dgp import unittest import numpy as np import pandas as pd diff --git a/tests/test_trajectory_ingestor.py b/tests/test_trajectory_ingestor.py index 54e55c5..c8e396d 100644 --- a/tests/test_trajectory_ingestor.py +++ b/tests/test_trajectory_ingestor.py @@ -5,7 +5,6 @@ import pandas as pd import numpy as np -from .context import dgp from dgp.lib import trajectory_ingestor as ti diff --git a/tests/test_workspaces.py b/tests/test_workspaces.py index 1bdf17b..7178870 100644 --- a/tests/test_workspaces.py +++ b/tests/test_workspaces.py @@ -9,7 +9,6 @@ from dgp.core.models.project import AirborneProject from dgp.core.controllers.project_controllers import AirborneProjectController from dgp.gui.workspaces import PlotTab -from .context import APP def test_plot_tab_init(project: AirborneProject): From 19be575096f95217d201d79dbb07ae0da727274c Mon Sep 17 00:00:00 2001 From: Zachery Brady Date: Sun, 5 Aug 2018 11:13:43 -0600 Subject: [PATCH 171/236] Model/Controller refactoring and cleanup Change menu_bindings property name to 'menu' Change project hdf5path property name to 'hdfpath' to match usage in DataSetController Fixed inconsistent usage of Icon enumeration Remove overly verbose warnings from ProjectController and replace with logging warning. --- dgp/core/controllers/controller_interfaces.py | 17 ++++++++++-- dgp/core/controllers/datafile_controller.py | 15 +++++------ dgp/core/controllers/dataset_controller.py | 26 +++++++++++------- dgp/core/controllers/flight_controller.py | 9 +------ dgp/core/controllers/gravimeter_controller.py | 2 +- dgp/core/controllers/project_controllers.py | 19 ++++++------- dgp/core/controllers/project_treemodel.py | 3 +++ dgp/gui/views/project_tree_view.py | 27 ++++++++++++------- tests/test_controllers.py | 6 ++--- tests/test_gui_main.py | 2 +- 10 files changed, 72 insertions(+), 54 deletions(-) diff --git a/dgp/core/controllers/controller_interfaces.py b/dgp/core/controllers/controller_interfaces.py index dc70aa2..f31f1a1 100644 --- a/dgp/core/controllers/controller_interfaces.py +++ b/dgp/core/controllers/controller_interfaces.py @@ -1,6 +1,6 @@ # -*- coding: utf-8 -*- from pathlib import Path -from typing import Union, Generator +from typing import Union, Generator, List, Tuple, Any from PyQt5.QtGui import QStandardItem, QStandardItemModel from PyQt5.QtWidgets import QWidget @@ -20,6 +20,8 @@ level classes also subclass QStandardItem and/or AttributeProxy. """ +MenuBinding = Tuple[str, Tuple[Any, ...]] + class DGPObject: @property @@ -193,6 +195,10 @@ def parent_widget(self) -> Union[QWidget, None]: except AttributeError: return None + @property + def menu(self) -> List[MenuBinding]: + raise NotImplementedError + class IAirborneController(IBaseController, IParent, IChild): def add_flight_dlg(self): @@ -207,7 +213,7 @@ def load_file_dlg(self, datatype: DataTypes, raise NotImplementedError @property - def hdf5path(self) -> Path: + def hdfpath(self) -> Path: raise NotImplementedError @property @@ -236,12 +242,19 @@ def can_activate(self): def project(self) -> IAirborneController: raise NotImplementedError + def get_parent(self) -> IAirborneController: + raise NotImplementedError + class IMeterController(IBaseController, IChild): pass class IDataSetController(IBaseController, IChild): + @property + def hdfpath(self) -> Path: + raise NotImplementedError + @property def can_activate(self): return True diff --git a/dgp/core/controllers/datafile_controller.py b/dgp/core/controllers/datafile_controller.py index a72a89f..1e7a419 100644 --- a/dgp/core/controllers/datafile_controller.py +++ b/dgp/core/controllers/datafile_controller.py @@ -1,19 +1,16 @@ # -*- coding: utf-8 -*- import logging from PyQt5.QtCore import Qt -from PyQt5.QtGui import QStandardItem, QIcon +from PyQt5.QtGui import QIcon from dgp.core.oid import OID from dgp.core.controllers.controller_interfaces import IDataSetController from dgp.core.controllers.controller_interfaces import IFlightController from dgp.core.controllers.controller_mixins import AttributeProxy +from dgp.core.types.enumerations import Icon from dgp.core.models.datafile import DataFile -GRAV_ICON = ":/icons/gravity" -GPS_ICON = ":/icons/gps" - - class DataFileController(QStandardItem, AttributeProxy): def __init__(self, datafile: DataFile, dataset=None): super().__init__() @@ -33,11 +30,11 @@ def uid(self) -> OID: return self._datafile.uid @property - def dataset(self) -> 'IDataSetController': + def dataset(self) -> IDataSetController: return self._dataset @property - def menu_bindings(self): # pragma: no cover + def menu(self): # pragma: no cover return self._bindings @property @@ -59,9 +56,9 @@ def set_datafile(self, datafile: DataFile): self.setToolTip("Source path: {!s}".format(datafile.source_path)) self.setData(datafile, role=Qt.UserRole) if self._datafile.group == 'gravity': - self.setIcon(QIcon(GRAV_ICON)) + self.setIcon(QIcon(Icon.GRAVITY.value)) elif self._datafile.group == 'trajectory': - self.setIcon(QIcon(GPS_ICON)) + self.setIcon(QIcon(Icon.TRAJECTORY.value)) def _describe(self): pass diff --git a/dgp/core/controllers/dataset_controller.py b/dgp/core/controllers/dataset_controller.py index 8f20620..a0ced81 100644 --- a/dgp/core/controllers/dataset_controller.py +++ b/dgp/core/controllers/dataset_controller.py @@ -1,4 +1,5 @@ # -*- coding: utf-8 -*- +import logging from pathlib import Path from typing import List, Union @@ -6,8 +7,9 @@ from PyQt5.QtCore import Qt from PyQt5.QtGui import QColor, QBrush, QIcon, QStandardItemModel, QStandardItem -from dgp.core.hdf5_manager import HDF5Manager from dgp.core.oid import OID +from dgp.core.types.enumerations import Icon +from dgp.core.hdf5_manager import HDF5Manager from dgp.core.controllers import controller_helpers from dgp.core.models.datafile import DataFile from dgp.core.models.dataset import DataSet, DataSegment @@ -36,6 +38,10 @@ def uid(self) -> OID: def datamodel(self) -> DataSegment: return self._segment + @property + def menu(self): + return [] + def update(self): self.setText(str(self._segment)) self.setToolTip(repr(self._segment)) @@ -47,6 +53,7 @@ def clone(self) -> 'DataSegmentController': class DataSetController(IDataSetController): def __init__(self, dataset: DataSet, flight: IFlightController): super().__init__() + self.log = logging.getLogger(__name__) self._dataset = dataset self._flight: IFlightController = flight self._project = self._flight.project @@ -54,7 +61,7 @@ def __init__(self, dataset: DataSet, flight: IFlightController): self.setEditable(False) self.setText(self._dataset.name) - self.setIcon(QIcon(":icons/folder_open.png")) + self.setIcon(QIcon(Icon.OPEN_FOLDER.value)) self.setBackground(QBrush(QColor(StateColor.INACTIVE.value))) self._grav_file = DataFileController(self._dataset.gravity, self) self._traj_file = DataFileController(self._dataset.trajectory, self) @@ -79,12 +86,12 @@ def __init__(self, dataset: DataSet, flight: IFlightController): self._menu_bindings = [ # pragma: no cover ('addAction', ('Set Name', self._set_name)), ('addAction', ('Set Active', lambda: self.get_parent().activate_child(self.uid))), - ('addAction', (QIcon(':/icons/meter_config.png'), 'Set Sensor', + ('addAction', (QIcon(Icon.METER.value), 'Set Sensor', self._set_sensor_dlg)), ('addSeparator', ()), - ('addAction', (QIcon(':/icons/gravity'), 'Import Gravity', + ('addAction', (QIcon(Icon.GRAVITY.value), 'Import Gravity', lambda: self._project.load_file_dlg(DataTypes.GRAVITY, dataset=self))), - ('addAction', (QIcon(':/icons/gps'), 'Import Trajectory', + ('addAction', (QIcon(Icon.TRAJECTORY.value), 'Import Trajectory', lambda: self._project.load_file_dlg(DataTypes.TRAJECTORY, dataset=self))), ('addAction', ('Align Data', self.align)), ('addSeparator', ()), @@ -101,10 +108,10 @@ def uid(self) -> OID: @property def hdfpath(self) -> Path: - return self._flight.get_parent().hdf5path + return self._flight.get_parent().hdfpath @property - def menu_bindings(self): # pragma: no cover + def menu(self): # pragma: no cover return self._menu_bindings @property @@ -162,8 +169,7 @@ def dataframe(self) -> DataFrame: def align(self): if self.gravity.empty or self.trajectory.empty: - # debug - print(f'Gravity or Trajectory is empty, cannot align') + self.log.info(f'Gravity or Trajectory is empty, cannot align.') return from dgp.lib.gravity_ingestor import DGS_AT1A_INTERP_FIELDS from dgp.lib.trajectory_ingestor import TRAJECTORY_INTERP_FIELDS @@ -173,7 +179,7 @@ def align(self): interp_only=fields) self._gravity = n_grav self._trajectory = n_traj - print('DataFrame aligned') + self.log.info(f'DataFrame aligned.') # def slice(self, segment_uid: OID): # df = self.dataframe() diff --git a/dgp/core/controllers/flight_controller.py b/dgp/core/controllers/flight_controller.py index dc9ee89..18ef8b8 100644 --- a/dgp/core/controllers/flight_controller.py +++ b/dgp/core/controllers/flight_controller.py @@ -95,14 +95,7 @@ def children(self): yield self.child(i, 0) @property - def menu_bindings(self): # pragma: no cover - """ - Returns - ------- - List[Tuple[str, Tuple[str, Callable],...] - A list of tuples declaring the QMenu construction parameters for this - object. - """ + def menu(self): # pragma: no cover return self._bindings @property diff --git a/dgp/core/controllers/gravimeter_controller.py b/dgp/core/controllers/gravimeter_controller.py index 9c67d02..30a32d4 100644 --- a/dgp/core/controllers/gravimeter_controller.py +++ b/dgp/core/controllers/gravimeter_controller.py @@ -32,7 +32,7 @@ def datamodel(self) -> object: return self._meter @property - def menu_bindings(self): + def menu(self): return self._bindings def get_parent(self) -> IAirborneController: diff --git a/dgp/core/controllers/project_controllers.py b/dgp/core/controllers/project_controllers.py index 9138baa..07bc51c 100644 --- a/dgp/core/controllers/project_controllers.py +++ b/dgp/core/controllers/project_controllers.py @@ -133,11 +133,11 @@ def path(self) -> Path: return self._project.path @property - def menu_bindings(self): # pragma: no cover + def menu(self): # pragma: no cover return self._bindings @property - def hdf5path(self) -> Path: + def hdfpath(self) -> Path: return self._project.path.joinpath("dgpdata.hdf5") @property @@ -239,10 +239,9 @@ def update(self): # pragma: no cover data has been added/removed/modified in the project.""" self.setText(self._project.name) try: - self.get_parent().projectMutated.emit() + self.get_parent().project_mutated(self) except AttributeError: - warnings.warn(f"project model not set for project " - f"{self.get_attr('name')}") + self.log.warning(f"project {self.get_attr('name')} has no parent") def _post_load(self, datafile: DataFile, dataset: IDataSetController, data: DataFrame) -> None: # pragma: no cover @@ -258,14 +257,13 @@ def _post_load(self, datafile: DataFile, dataset: IDataSetController, The ingested pandas DataFrame to be dumped to the HDF5 store """ - if HDF5Manager.save_data(data, datafile, path=self.hdf5path): + if HDF5Manager.save_data(data, datafile, path=self.hdfpath): self.log.info("Data imported and saved to HDF5 Store") dataset.add_datafile(datafile) try: - self.get_parent().projectMutated.emit() + self.get_parent().project_mutated(self) except AttributeError: - warnings.warn(f"parent model not set for project " - f"{self.get_attr('name')}") + self.log.warning(f"project {self.get_attr('name')} has no parent") def load_file_dlg(self, datatype: DataTypes = DataTypes.GRAVITY, flight: IFlightController = None, @@ -319,5 +317,4 @@ def _close_project(self): try: self.get_parent().remove_project(self) except AttributeError: - warnings.warn(f"unable to close project, parent model is not set" - f"for project {self.get_attr('name')}") + self.log.warning(f"project {self.get_attr('name')} has no parent") diff --git a/dgp/core/controllers/project_treemodel.py b/dgp/core/controllers/project_treemodel.py index 63de0f5..aa1b156 100644 --- a/dgp/core/controllers/project_treemodel.py +++ b/dgp/core/controllers/project_treemodel.py @@ -138,6 +138,9 @@ def item_activated(self, index: QModelIndex): elif isinstance(item, IDataSetController): item.get_parent().activate_child(item.uid) + def project_mutated(self, project: IAirborneController): + self.projectMutated.emit() + def save_projects(self): for i in range(self.rowCount()): prj: IAirborneController = self.item(i, 0) diff --git a/dgp/gui/views/project_tree_view.py b/dgp/gui/views/project_tree_view.py index 038e4a6..4760ec1 100644 --- a/dgp/gui/views/project_tree_view.py +++ b/dgp/gui/views/project_tree_view.py @@ -6,7 +6,10 @@ from PyQt5.QtGui import QContextMenuEvent, QStandardItem from PyQt5.QtWidgets import QTreeView, QMenu -from dgp.core.controllers.controller_interfaces import IAirborneController, IChild +from dgp.core.controllers.controller_interfaces import (IAirborneController, + IChild, + IBaseController, + MenuBinding, IParent) from dgp.core.controllers.project_treemodel import ProjectTreeModel @@ -74,20 +77,24 @@ def _on_double_click(self, index: QModelIndex): self.setExpanded(index, not self.isExpanded(index)) self.model().item_activated(index) - def _build_menu(self, menu: QMenu, bindings: List[Tuple[str, Tuple[Any]]]): + def _build_menu(self, menu: QMenu, bindings: List[MenuBinding]): self._action_refs.clear() - for attr, params in bindings: + for attr, args in bindings: if hasattr(QMenu, attr): - res = getattr(menu, attr)(*params) + res = getattr(menu, attr)(*args) self._action_refs.append(res) def contextMenuEvent(self, event: QContextMenuEvent, *args, **kwargs): index = self.indexAt(event.pos()) - item = self.model().itemFromIndex(index) # type: QStandardItem + item: IBaseController = self.model().itemFromIndex(index) expanded = self.isExpanded(index) menu = QMenu(self) - bindings = getattr(item, 'menu_bindings', [])[:] # type: List + # bindings = getattr(item, 'menu_bindings', [])[:] # type: List + if isinstance(item, IBaseController): + bindings = item.menu[:] + else: + bindings = [] # Experimental Menu Inheritance/Extend functionality # if hasattr(event_item, 'inherit_context') and event_item.inherit_context: @@ -108,11 +115,13 @@ def contextMenuEvent(self, event: QContextMenuEvent, *args, **kwargs): # pprint(ancestor_bindings) # bindings.extend(ancestor_bindings) + bindings.append(('addSeparator', ())) if isinstance(item, IAirborneController): - bindings.insert(0, ('addAction', ("Expand All", self.expandAll))) + bindings.append(('addAction', ("Expand All", self.expandAll))) - bindings.append(('addAction', ("Expand" if not expanded else "Collapse", - lambda: self.setExpanded(index, not expanded)))) + if item.rowCount(): + bindings.append(('addAction', ("Expand" if not expanded else "Collapse", + lambda: self.setExpanded(index, not expanded)))) # bindings.append(('addAction', ("Properties", self._get_item_attr(item, 'properties')))) self._build_menu(menu, bindings) diff --git a/tests/test_controllers.py b/tests/test_controllers.py index 47fb59f..bd33cfa 100644 --- a/tests/test_controllers.py +++ b/tests/test_controllers.py @@ -90,8 +90,8 @@ def test_flight_controller(project: AirborneProject): _traj_data = [0, 1, 5, 9] _grav_data = [2, 8, 1, 0] # Load test data into temporary project HDFStore - HDF5Manager.save_data(DataFrame(_traj_data), data0, path=prj_ctrl.hdf5path) - HDF5Manager.save_data(DataFrame(_grav_data), data1, path=prj_ctrl.hdf5path) + HDF5Manager.save_data(DataFrame(_traj_data), data0, path=prj_ctrl.hdfpath) + HDF5Manager.save_data(DataFrame(_grav_data), data1, path=prj_ctrl.hdfpath) fc = prj_ctrl.add_child(flight) assert hash(fc) @@ -138,7 +138,7 @@ def test_FlightController_bindings(project: AirborneProject): assert isinstance(fc0, FlightController) # Validate menu bindings - for binding in fc0.menu_bindings: + for binding in fc0.menu: assert 2 == len(binding) assert hasattr(QMenu, binding[0]) diff --git a/tests/test_gui_main.py b/tests/test_gui_main.py index 955c8ea..efd634b 100644 --- a/tests/test_gui_main.py +++ b/tests/test_gui_main.py @@ -135,7 +135,7 @@ def test_MainWindow_open_project_dialog(window: MainWindow, project_factory, tmp prj2: AirborneProject = project_factory("Proj2", tmpdir, dataset=False) prj2_ctrl = AirborneProjectController(prj2) prj2_ctrl.save() - prj2_ctrl.hdf5path.touch(exist_ok=True) + prj2_ctrl.hdfpath.touch(exist_ok=True) assert window.model.active_project.path != prj2_ctrl.path assert 1 == window.model.rowCount() From da0a8ee6eb6c400b6af61519e37ef16277414beb Mon Sep 17 00:00:00 2001 From: Zachery Brady Date: Mon, 6 Aug 2018 07:42:35 -0600 Subject: [PATCH 172/236] Add linux 'open in explorer' support. Add xdg-open target for linux systems to show a directory in the native Gnome/KDE explorer. --- dgp/core/controllers/controller_helpers.py | 4 +++- dgp/core/controllers/datafile_controller.py | 6 ++++++ 2 files changed, 9 insertions(+), 1 deletion(-) diff --git a/dgp/core/controllers/controller_helpers.py b/dgp/core/controllers/controller_helpers.py index df1bd12..378ddb4 100644 --- a/dgp/core/controllers/controller_helpers.py +++ b/dgp/core/controllers/controller_helpers.py @@ -70,7 +70,6 @@ def show_in_explorer(path: Path): # pragma: no cover ---------- path : :class:`pathlib.Path` - ToDo: Linux file explorer handling """ dest = path.absolute().resolve() if sys.platform == 'darwin': @@ -80,6 +79,9 @@ def show_in_explorer(path: Path): # pragma: no cover elif sys.platform == 'win32': target = 'explorer' args = shlex.quote(f'{dest!s}') + elif sys.platform == 'linux': + target = 'xdg-open' + args = shlex.quote(f'{dest!s}') else: return diff --git a/dgp/core/controllers/datafile_controller.py b/dgp/core/controllers/datafile_controller.py index 1e7a419..f4cc91b 100644 --- a/dgp/core/controllers/datafile_controller.py +++ b/dgp/core/controllers/datafile_controller.py @@ -8,6 +8,7 @@ from dgp.core.controllers.controller_interfaces import IFlightController from dgp.core.controllers.controller_mixins import AttributeProxy from dgp.core.types.enumerations import Icon +from dgp.core.controllers.controller_helpers import show_in_explorer from dgp.core.models.datafile import DataFile @@ -23,6 +24,8 @@ def __init__(self, datafile: DataFile, dataset=None): self._bindings = [ ('addAction', ('Describe', self._describe)), # ('addAction', ('Delete <%s>' % self._datafile, lambda: None)) + ('addAction', (QIcon(Icon.OPEN_FOLDER.value), 'Show in Explorer', + self._launch_explorer)) ] @property @@ -65,3 +68,6 @@ def _describe(self): # df = self.flight.load_data(self) # self.log.debug(df.describe()) + def _launch_explorer(self): + if self._datafile is not None: + show_in_explorer(self._datafile.source_path.parent) From ad9fa401f0f6963c3ad6d9086cfb3e9fd53eccbd Mon Sep 17 00:00:00 2001 From: Zachery Brady Date: Mon, 6 Aug 2018 09:07:36 -0600 Subject: [PATCH 173/236] Refactor out usage of string values for Data Types. Rename DataTypes enum to DataType. Implement DataType enum in DataFile/Controller, and add definition to project serialization/de-serialization classes. --- dgp/core/__init__.py | 2 ++ dgp/core/controllers/controller_interfaces.py | 4 +-- dgp/core/controllers/datafile_controller.py | 5 ++-- dgp/core/controllers/dataset_controller.py | 14 ++++----- dgp/core/controllers/flight_controller.py | 8 ++--- dgp/core/controllers/project_controllers.py | 16 +++++----- dgp/core/controllers/project_treemodel.py | 6 ++-- dgp/core/models/datafile.py | 11 +++---- dgp/core/models/project.py | 6 ++++ dgp/core/types/enumerations.py | 2 +- dgp/gui/dialogs/data_import_dialog.py | 30 ++++++++----------- tests/conftest.py | 5 ++-- tests/test_controllers.py | 21 ++++++------- tests/test_dialogs.py | 10 +++---- tests/test_hdf5store.py | 9 +++--- tests/test_models.py | 5 ++-- 16 files changed, 82 insertions(+), 72 deletions(-) diff --git a/dgp/core/__init__.py b/dgp/core/__init__.py index e69de29..d725f46 100644 --- a/dgp/core/__init__.py +++ b/dgp/core/__init__.py @@ -0,0 +1,2 @@ +# -*- coding: utf-8 -*- +from .types.enumerations import DataType, Icon, MeterTypes, GravityTypes diff --git a/dgp/core/controllers/controller_interfaces.py b/dgp/core/controllers/controller_interfaces.py index f31f1a1..77a18de 100644 --- a/dgp/core/controllers/controller_interfaces.py +++ b/dgp/core/controllers/controller_interfaces.py @@ -7,7 +7,7 @@ from dgp.core.controllers.controller_mixins import AttributeProxy from dgp.core.oid import OID -from dgp.core.types.enumerations import DataTypes +from dgp.core.types.enumerations import DataType """ @@ -207,7 +207,7 @@ def add_flight_dlg(self): def add_gravimeter_dlg(self): raise NotImplementedError - def load_file_dlg(self, datatype: DataTypes, + def load_file_dlg(self, datatype: DataType, flight: 'IFlightController' = None, dataset: 'IDataSetController' = None): # pragma: no cover raise NotImplementedError diff --git a/dgp/core/controllers/datafile_controller.py b/dgp/core/controllers/datafile_controller.py index f4cc91b..4d6e351 100644 --- a/dgp/core/controllers/datafile_controller.py +++ b/dgp/core/controllers/datafile_controller.py @@ -3,6 +3,7 @@ from PyQt5.QtCore import Qt from PyQt5.QtGui import QIcon +from dgp.core import DataType from dgp.core.oid import OID from dgp.core.controllers.controller_interfaces import IDataSetController from dgp.core.controllers.controller_interfaces import IFlightController @@ -58,9 +59,9 @@ def set_datafile(self, datafile: DataFile): self.setText(datafile.label) self.setToolTip("Source path: {!s}".format(datafile.source_path)) self.setData(datafile, role=Qt.UserRole) - if self._datafile.group == 'gravity': + if self._datafile.group is DataType.GRAVITY: self.setIcon(QIcon(Icon.GRAVITY.value)) - elif self._datafile.group == 'trajectory': + elif self._datafile.group is DataType.TRAJECTORY: self.setIcon(QIcon(Icon.TRAJECTORY.value)) def _describe(self): diff --git a/dgp/core/controllers/dataset_controller.py b/dgp/core/controllers/dataset_controller.py index a0ced81..bada5a7 100644 --- a/dgp/core/controllers/dataset_controller.py +++ b/dgp/core/controllers/dataset_controller.py @@ -13,7 +13,7 @@ from dgp.core.controllers import controller_helpers from dgp.core.models.datafile import DataFile from dgp.core.models.dataset import DataSet, DataSegment -from dgp.core.types.enumerations import DataTypes, StateColor +from dgp.core.types.enumerations import DataType, StateColor from dgp.lib.etc import align_frames from .controller_interfaces import IFlightController, IDataSetController @@ -65,8 +65,8 @@ def __init__(self, dataset: DataSet, flight: IFlightController): self.setBackground(QBrush(QColor(StateColor.INACTIVE.value))) self._grav_file = DataFileController(self._dataset.gravity, self) self._traj_file = DataFileController(self._dataset.trajectory, self) - self._child_map = {'gravity': self._grav_file, - 'trajectory': self._traj_file} + self._child_map = {DataType.GRAVITY: self._grav_file, + DataType.TRAJECTORY: self._traj_file} self._segments = ProjectFolder("Segments") for segment in dataset.segments: @@ -90,9 +90,9 @@ def __init__(self, dataset: DataSet, flight: IFlightController): self._set_sensor_dlg)), ('addSeparator', ()), ('addAction', (QIcon(Icon.GRAVITY.value), 'Import Gravity', - lambda: self._project.load_file_dlg(DataTypes.GRAVITY, dataset=self))), + lambda: self._project.load_file_dlg(DataType.GRAVITY, dataset=self))), ('addAction', (QIcon(Icon.TRAJECTORY.value), 'Import Trajectory', - lambda: self._project.load_file_dlg(DataTypes.TRAJECTORY, dataset=self))), + lambda: self._project.load_file_dlg(DataType.TRAJECTORY, dataset=self))), ('addAction', ('Align Data', self.align)), ('addSeparator', ()), ('addAction', ('Delete', lambda: self.get_parent().remove_child(self.uid))), @@ -203,11 +203,11 @@ def set_parent(self, parent: IFlightController) -> None: def add_datafile(self, datafile: DataFile) -> None: # datafile.set_parent(self) - if datafile.group == 'gravity': + if datafile.group is DataType.GRAVITY: self.datamodel.gravity = datafile self._grav_file.set_datafile(datafile) self._gravity = DataFrame() - elif datafile.group == 'trajectory': + elif datafile.group is DataType.TRAJECTORY: self.datamodel.trajectory = datafile self._traj_file.set_datafile(datafile) self._trajectory = DataFrame() diff --git a/dgp/core/controllers/flight_controller.py b/dgp/core/controllers/flight_controller.py index 18ef8b8..1bf557e 100644 --- a/dgp/core/controllers/flight_controller.py +++ b/dgp/core/controllers/flight_controller.py @@ -12,7 +12,7 @@ from dgp.core.controllers.controller_interfaces import IAirborneController, IFlightController from dgp.core.models.dataset import DataSet from dgp.core.models.flight import Flight -from dgp.core.types.enumerations import DataTypes, StateColor +from dgp.core.types.enumerations import DataType, StateColor from dgp.gui.dialogs.add_flight_dialog import AddFlightDialog @@ -73,9 +73,9 @@ def __init__(self, flight: Flight, project: IAirborneController = None): ('addAction', ('Set Active', lambda: self._activate_self())), ('addAction', ('Import Gravity', - lambda: self._load_file_dialog(DataTypes.GRAVITY))), + lambda: self._load_file_dialog(DataType.GRAVITY))), ('addAction', ('Import Trajectory', - lambda: self._load_file_dialog(DataTypes.TRAJECTORY))), + lambda: self._load_file_dialog(DataType.TRAJECTORY))), ('addSeparator', ()), ('addAction', (f'Delete {self._flight.name}', lambda: self._delete_self(confirm=True))), @@ -245,7 +245,7 @@ def _set_name(self): # pragma: no cover if name: self.set_attr('name', name) - def _load_file_dialog(self, datatype: DataTypes): # pragma: no cover + def _load_file_dialog(self, datatype: DataType): # pragma: no cover self.get_parent().load_file_dlg(datatype, flight=self) def _show_properties_dlg(self): # pragma: no cover diff --git a/dgp/core/controllers/project_controllers.py b/dgp/core/controllers/project_controllers.py index 07bc51c..d4049a4 100644 --- a/dgp/core/controllers/project_controllers.py +++ b/dgp/core/controllers/project_controllers.py @@ -24,7 +24,7 @@ from dgp.core.models.flight import Flight from dgp.core.models.meter import Gravimeter from dgp.core.models.project import GravityProject, AirborneProject -from dgp.core.types.enumerations import DataTypes, Icon, StateColor +from dgp.core.types.enumerations import DataType, Icon, StateColor from dgp.gui.utils import ProgressEvent from dgp.gui.dialogs.add_flight_dialog import AddFlightDialog from dgp.gui.dialogs.add_gravimeter_dialog import AddGravimeterDialog @@ -265,7 +265,7 @@ def _post_load(self, datafile: DataFile, dataset: IDataSetController, except AttributeError: self.log.warning(f"project {self.get_attr('name')} has no parent") - def load_file_dlg(self, datatype: DataTypes = DataTypes.GRAVITY, + def load_file_dlg(self, datatype: DataType = DataType.GRAVITY, flight: IFlightController = None, dataset: IDataSetController = None) -> None: # pragma: no cover """ @@ -278,7 +278,7 @@ def load_file_dlg(self, datatype: DataTypes = DataTypes.GRAVITY, Parameters ---------- - datatype : DataTypes + datatype : DataType flight : IFlightController, optional Set the default flight selected when launching the dialog @@ -286,15 +286,15 @@ def load_file_dlg(self, datatype: DataTypes = DataTypes.GRAVITY, Set the default Dataset selected when launching the dialog """ - def load_data(datafile: DataFile, params: dict, parent: IDataSetController): - if datafile.group == 'gravity': + def _on_load(datafile: DataFile, params: dict, parent: IDataSetController): + if datafile.group is DataType.GRAVITY: method = read_at1a - elif datafile.group == 'trajectory': + elif datafile.group is DataType.TRAJECTORY: method = import_trajectory else: self.log.error("Unrecognized data group: " + datafile.group) return - progress_event = ProgressEvent(self.uid, f"Loading {datafile.group}", stop=0) + progress_event = ProgressEvent(self.uid, f"Loading {datafile.group.value}", stop=0) self.get_parent().progressNotificationRequested.emit(progress_event) loader = FileLoader(datafile.source_path, method, parent=self.parent_widget, **params) @@ -306,7 +306,7 @@ def load_data(datafile: DataFile, params: dict, parent: IDataSetController): dlg = DataImportDialog(self, datatype, parent=self.parent_widget) if flight is not None: dlg.set_initial_flight(flight) - dlg.load.connect(load_data) + dlg.load.connect(_on_load) dlg.exec_() def properties_dlg(self): # pragma: no cover diff --git a/dgp/core/controllers/project_treemodel.py b/dgp/core/controllers/project_treemodel.py index aa1b156..06ed20e 100644 --- a/dgp/core/controllers/project_treemodel.py +++ b/dgp/core/controllers/project_treemodel.py @@ -5,7 +5,7 @@ from PyQt5.QtCore import QObject, QModelIndex, pyqtSignal, QSortFilterProxyModel, Qt from PyQt5.QtGui import QStandardItemModel -from dgp.core.types.enumerations import DataTypes +from dgp.core.types.enumerations import DataType from dgp.core.oid import OID from dgp.core.controllers.controller_interfaces import (IFlightController, IAirborneController, @@ -149,12 +149,12 @@ def save_projects(self): def import_gps(self): # pragma: no cover if self.active_project is None: return self._warn_no_active_project() - self.active_project.load_file_dlg(DataTypes.TRAJECTORY) + self.active_project.load_file_dlg(DataType.TRAJECTORY) def import_gravity(self): # pragma: no cover if self.active_project is None: return self._warn_no_active_project() - self.active_project.load_file_dlg(DataTypes.GRAVITY) + self.active_project.load_file_dlg(DataType.GRAVITY) def add_gravimeter(self): # pragma: no cover if self.active_project is None: diff --git a/dgp/core/models/datafile.py b/dgp/core/models/datafile.py index dfe9687..ab32f23 100644 --- a/dgp/core/models/datafile.py +++ b/dgp/core/models/datafile.py @@ -3,6 +3,7 @@ from pathlib import Path from typing import Optional +from dgp.core import DataType from dgp.core.oid import OID @@ -26,12 +27,12 @@ class DataFile: __slots__ = ('uid', 'date', 'name', 'group', 'source_path', 'column_format') - def __init__(self, group: str, date: datetime, source_path: Path, + def __init__(self, group: DataType, date: datetime, source_path: Path, name: Optional[str] = None, column_format=None, uid: Optional[OID] = None): self.uid = uid or OID(self) self.uid.set_pointer(self) - self.group = group.lower() + self.group = group self.date = date self.source_path = Path(source_path) self.name = name or self.source_path.name @@ -39,7 +40,7 @@ def __init__(self, group: str, date: datetime, source_path: Path, @property def label(self) -> str: - return f'[{self.group}] {self.name}' + return f'[{self.group.value}] {self.name}' @property def nodepath(self) -> str: @@ -51,10 +52,10 @@ def nodepath(self) -> str: An underscore (_) is prepended to the parent and uid ID's to avoid the NaturalNameWarning generated if the UID begins with a number. """ - return f'/{self.group}/_{self.uid.base_uuid}' + return f'/{self.group.value}/_{self.uid.base_uuid}' def __str__(self): - return f'({self.group}) :: {self.nodepath}' + return f'({self.group.value}) :: {self.nodepath}' def __hash__(self): return hash(self.uid) diff --git a/dgp/core/models/project.py b/dgp/core/models/project.py index d53a388..50047e9 100644 --- a/dgp/core/models/project.py +++ b/dgp/core/models/project.py @@ -12,6 +12,7 @@ from pprint import pprint from typing import Optional, List, Any, Dict, Union +from dgp.core import DataType from dgp.core.types.reference import Reference from dgp.core.oid import OID from .flight import Flight @@ -75,6 +76,9 @@ def default(self, o: Any): return {'_type': 'Path', 'path': str(o.resolve())} if isinstance(o, Reference): return o.serialize() + if isinstance(o, DataType): + j_complex['value'] = o.value + return j_complex return super().default(o) @@ -153,6 +157,8 @@ def object_hook(self, json_o: dict): return datetime.date.fromordinal(*params.values()) elif _type == Path.__name__: return Path(*params.values()) + elif _type == DataType.__name__: + return DataType(*params.values()) elif _type == Reference.__name__: self._references.append((json_o['parent'], json_o['attr'], json_o['ref'])) return None diff --git a/dgp/core/types/enumerations.py b/dgp/core/types/enumerations.py index bb8ad61..38af2bc 100644 --- a/dgp/core/types/enumerations.py +++ b/dgp/core/types/enumerations.py @@ -51,7 +51,7 @@ class MeterTypes(enum.Enum): TAGS = 'tags' -class DataTypes(enum.Enum): +class DataType(enum.Enum): """Gravity/Trajectory Data Types""" GRAVITY = 'gravity' TRAJECTORY = 'trajectory' diff --git a/dgp/gui/dialogs/data_import_dialog.py b/dgp/gui/dialogs/data_import_dialog.py index 61db724..de7caaa 100644 --- a/dgp/gui/dialogs/data_import_dialog.py +++ b/dgp/gui/dialogs/data_import_dialog.py @@ -10,11 +10,11 @@ from PyQt5.QtGui import QStandardItemModel, QStandardItem, QIcon, QRegExpValidator from PyQt5.QtWidgets import QDialog, QFileDialog, QListWidgetItem, QCalendarWidget, QWidget, QFormLayout +from dgp.core import Icon, DataType from dgp.core.controllers.gravimeter_controller import GravimeterController from dgp.core.controllers.dataset_controller import DataSetController from dgp.core.controllers.controller_interfaces import IAirborneController, IFlightController, IDataSetController from dgp.core.models.datafile import DataFile -from dgp.core.types.enumerations import DataTypes from dgp.gui.ui.data_import_dialog import Ui_DataImportDialog from .dialog_mixins import FormValidator from .custom_validators import FileExistsValidator @@ -27,7 +27,7 @@ class DataImportDialog(QDialog, Ui_DataImportDialog, FormValidator): load = pyqtSignal(DataFile, dict, DataSetController) def __init__(self, project: IAirborneController, - datatype: DataTypes, base_path: str = None, + datatype: DataType, base_path: str = None, parent: Optional[QWidget] = None): super().__init__(parent=parent) self.setupUi(self) @@ -36,19 +36,19 @@ def __init__(self, project: IAirborneController, self._project = project self._datatype = datatype self._base_path = base_path or str(Path().home().resolve()) - self._type_map = {DataTypes.GRAVITY: 0, DataTypes.TRAJECTORY: 1} - self._type_filters = {DataTypes.GRAVITY: "Gravity (*.dat *.csv);;Any (*.*)", - DataTypes.TRAJECTORY: "Trajectory (*.dat *.csv *.txt);;Any (*.*)"} + self._type_map = {DataType.GRAVITY: 0, DataType.TRAJECTORY: 1} + self._type_filters = {DataType.GRAVITY: "Gravity (*.dat *.csv);;Any (*.*)", + DataType.TRAJECTORY: "Trajectory (*.dat *.csv *.txt);;Any (*.*)"} # Declare parameter names and values mapped from the dialog for specific DataType # These match up with the methods in trajectory/gravity_ingestor self._params_map = { - DataTypes.GRAVITY: { + DataType.GRAVITY: { 'columns': lambda: None, # TODO: Change in future based on Sensor Type 'interp': lambda: self.qchb_grav_interp.isChecked(), 'skiprows': lambda: 1 if self.qchb_grav_hasheader.isChecked() else 0 }, - DataTypes.TRAJECTORY: { + DataType.TRAJECTORY: { 'timeformat': lambda: self.qcb_traj_timeformat.currentText().lower(), 'columns': lambda: self.qcb_traj_timeformat.currentData(Qt.UserRole), 'skiprows': lambda: 1 if self.qchb_traj_hasheader.isChecked() else 0, @@ -56,10 +56,10 @@ def __init__(self, project: IAirborneController, } } - self._gravity = QListWidgetItem(QIcon(":/icons/gravity"), "Gravity") - self._gravity.setData(Qt.UserRole, DataTypes.GRAVITY) - self._trajectory = QListWidgetItem(QIcon(":/icons/gps"), "Trajectory") - self._trajectory.setData(Qt.UserRole, DataTypes.TRAJECTORY) + self._gravity = QListWidgetItem(QIcon(Icon.GRAVITY.value), "Gravity") + self._gravity.setData(Qt.UserRole, DataType.GRAVITY) + self._trajectory = QListWidgetItem(QIcon(Icon.TRAJECTORY.value), "Trajectory") + self._trajectory.setData(Qt.UserRole, DataType.TRAJECTORY) self.qlw_datatype.addItem(self._gravity) self.qlw_datatype.addItem(self._trajectory) @@ -68,10 +68,6 @@ def __init__(self, project: IAirborneController, self.qcb_flight.currentIndexChanged.connect(self._flight_changed) self.qcb_flight.setModel(self.project.flight_model) - # Dataset support - experimental - # self._dataset_model = QStandardItemModel() - # self.qcb_dataset.setModel(self._dataset_model) - self.qde_date.setDate(datetime.today()) self._calendar = QCalendarWidget() self.qde_date.setCalendarWidget(self._calendar) @@ -150,7 +146,7 @@ def file_path(self) -> Union[Path, None]: return Path(self.qle_filepath.text()) @property - def datatype(self) -> DataTypes: + def datatype(self) -> DataType: return self.qlw_datatype.currentItem().data(Qt.UserRole) @property @@ -167,7 +163,7 @@ def accept(self): # pragma: no cover print("Dialog input not valid") return - file = DataFile(self.datatype.value.lower(), date=self.date, + file = DataFile(self.datatype, date=self.date, source_path=self.file_path, name=self.qle_rename.text()) param_map = self._params_map[self.datatype] params = {key: value() for key, value in param_map.items()} diff --git a/tests/conftest.py b/tests/conftest.py index 20b863c..8ff21c3 100644 --- a/tests/conftest.py +++ b/tests/conftest.py @@ -10,6 +10,7 @@ from PyQt5 import QtCore from PyQt5.QtWidgets import QApplication +from dgp.core import DataType from dgp.core.controllers.project_controllers import AirborneProjectController from dgp.core.hdf5_manager import HDF5_NAME from dgp.core.models.datafile import DataFile @@ -77,8 +78,8 @@ def _factory(name, path, flights=2, dataset=True): mtr = Gravimeter.from_ini(Path('tests').joinpath('at1m.ini'), name="AT1A-X") - grav1 = DataFile('gravity', datetime.now(), base_dir.joinpath('gravity1.dat')) - traj1 = DataFile('trajectory', datetime.now(), base_dir.joinpath('gps1.dat')) + grav1 = DataFile(DataType.GRAVITY, datetime.now(), base_dir.joinpath('gravity1.dat')) + traj1 = DataFile(DataType.TRAJECTORY, datetime.now(), base_dir.joinpath('gps1.dat')) seg1 = DataSegment(OID(), get_ts(0), get_ts(1500), 0, "seg1") seg2 = DataSegment(OID(), get_ts(1501), get_ts(3000), 1, "seg2") diff --git a/tests/test_controllers.py b/tests/test_controllers.py index bd33cfa..48d918e 100644 --- a/tests/test_controllers.py +++ b/tests/test_controllers.py @@ -9,6 +9,7 @@ from PyQt5.QtWidgets import QWidget, QMenu from pandas import DataFrame +from dgp.core import DataType from dgp.core.oid import OID from dgp.core.hdf5_manager import HDF5Manager from dgp.core.models.dataset import DataSet, DataSegment @@ -81,8 +82,8 @@ def test_gravimeter_controller(tmpdir): def test_flight_controller(project: AirborneProject): prj_ctrl = AirborneProjectController(project) flight = Flight('Test-Flt-1') - data0 = DataFile('trajectory', datetime(2018, 5, 10), Path('./data0.dat')) - data1 = DataFile('gravity', datetime(2018, 5, 15), Path('./data1.dat')) + data0 = DataFile(DataType.TRAJECTORY, datetime(2018, 5, 10), Path('./data0.dat')) + data1 = DataFile(DataType.GRAVITY, datetime(2018, 5, 15), Path('./data1.dat')) dataset = DataSet(data1, data0) # dataset.set_active(True) flight.datasets.append(dataset) @@ -225,8 +226,8 @@ def test_dataset_controller(tmpdir): hdf = Path(tmpdir).joinpath('test.hdf5') prj = AirborneProject(name="TestPrj", path=Path(tmpdir)) flt = Flight("TestFlt") - grav_file = DataFile('gravity', datetime.now(), Path(tmpdir).joinpath('gravity.dat')) - traj_file = DataFile('trajectory', datetime.now(), Path(tmpdir).joinpath('trajectory.txt')) + grav_file = DataFile(DataType.GRAVITY, datetime.now(), Path(tmpdir).joinpath('gravity.dat')) + traj_file = DataFile(DataType.TRAJECTORY, datetime.now(), Path(tmpdir).joinpath('trajectory.txt')) ds = DataSet(grav_file, traj_file) seg0 = DataSegment(OID(), datetime.now().timestamp(), datetime.now().timestamp() + 5000, 0) ds.segments.append(seg0) @@ -244,11 +245,11 @@ def test_dataset_controller(tmpdir): assert grav_file == dsc.get_datafile(grav_file.group).datamodel assert traj_file == dsc.get_datafile(traj_file.group).datamodel - grav1_file = DataFile('gravity', datetime.now(), Path(tmpdir).joinpath('gravity2.dat')) + grav1_file = DataFile(DataType.GRAVITY, datetime.now(), Path(tmpdir).joinpath('gravity2.dat')) dsc.add_datafile(grav1_file) assert grav1_file == dsc.get_datafile(grav1_file.group).datamodel - traj1_file = DataFile('trajectory', datetime.now(), Path(tmpdir).joinpath('traj2.txt')) + traj1_file = DataFile(DataType.TRAJECTORY, datetime.now(), Path(tmpdir).joinpath('traj2.txt')) dsc.add_datafile(traj1_file) assert traj1_file == dsc.get_datafile(traj1_file.group).datamodel @@ -308,9 +309,9 @@ def test_dataset_datafiles(project: AirborneProject): ds_ctrl = flt_ctrl.get_child(flt_ctrl.datamodel.datasets[0].uid) grav_file = ds_ctrl.datamodel.gravity - grav_file_ctrl = ds_ctrl.get_datafile('gravity') + grav_file_ctrl = ds_ctrl.get_datafile(DataType.GRAVITY) gps_file = ds_ctrl.datamodel.trajectory - gps_file_ctrl = ds_ctrl.get_datafile('trajectory') + gps_file_ctrl = ds_ctrl.get_datafile(DataType.TRAJECTORY) assert grav_file.uid == grav_file_ctrl.uid assert ds_ctrl == grav_file_ctrl.dataset @@ -352,9 +353,9 @@ def test_dataset_data_api(project: AirborneProject, hdf5file, gravdata, gpsdata) prj_ctrl = AirborneProjectController(project) flt_ctrl = prj_ctrl.get_child(project.flights[0].uid) - gravfile = DataFile('gravity', datetime.now(), + gravfile = DataFile(DataType.GRAVITY, datetime.now(), Path('tests/sample_gravity.csv')) - gpsfile = DataFile('trajectory', datetime.now(), + gpsfile = DataFile(DataType.TRAJECTORY, datetime.now(), Path('tests/sample_trajectory.txt'), column_format='hms') dataset = DataSet(gravfile, gpsfile) diff --git a/tests/test_dialogs.py b/tests/test_dialogs.py index f68670c..1b3c42d 100644 --- a/tests/test_dialogs.py +++ b/tests/test_dialogs.py @@ -17,7 +17,7 @@ from dgp.core.models.flight import Flight from dgp.core.controllers.project_controllers import AirborneProjectController from dgp.core.models.project import AirborneProject -from dgp.core.types.enumerations import DataTypes +from dgp.core.types.enumerations import DataType from dgp.gui.dialogs.add_gravimeter_dialog import AddGravimeterDialog from dgp.gui.dialogs.add_flight_dialog import AddFlightDialog from dgp.gui.dialogs.data_import_dialog import DataImportDialog @@ -132,7 +132,7 @@ def test_import_data_dialog(self, airborne_prj, tmpdir): fc1 = project_ctrl.add_child(flt1) # type: FlightController fc2 = project_ctrl.add_child(flt2) - dlg = DataImportDialog(project_ctrl, datatype=DataTypes.GRAVITY) + dlg = DataImportDialog(project_ctrl, datatype=DataType.GRAVITY) load_spy = QtTest.QSignalSpy(dlg.load) # test set_initial_flight @@ -151,12 +151,12 @@ def test_import_data_dialog(self, airborne_prj, tmpdir): dlg.qchb_grav_interp.setChecked(True) assert dlg.qchb_grav_interp.isChecked() - _grav_map = dlg._params_map[DataTypes.GRAVITY] + _grav_map = dlg._params_map[DataType.GRAVITY] assert _grav_map['columns']() is None assert _grav_map['interp']() assert not _grav_map['skiprows']() - _traj_map = dlg._params_map[DataTypes.TRAJECTORY] + _traj_map = dlg._params_map[DataType.TRAJECTORY] _time_col_map = { 'hms': ['mdy', 'hms', 'lat', 'long', 'ell_ht'], 'sow': ['week', 'sow', 'lat', 'long', 'ell_ht'], @@ -178,7 +178,7 @@ def test_import_data_dialog(self, airborne_prj, tmpdir): # Test emission of DataFile on _load_file # TODO: Fix this, need an actual file to test loading - # assert dlg.datatype == DataTypes.GRAVITY + # assert dlg.datatype == DataType.GRAVITY # dlg.qcb_flight.setCurrentIndex(0) # dlg.qcb_dataset.setCurrentIndex(0) # dlg.accept() diff --git a/tests/test_hdf5store.py b/tests/test_hdf5store.py index baa2995..351e937 100644 --- a/tests/test_hdf5store.py +++ b/tests/test_hdf5store.py @@ -6,6 +6,7 @@ import pytest from pandas import DataFrame +from dgp.core import DataType from dgp.core.models.flight import Flight from dgp.core.models.datafile import DataFile from dgp.core.hdf5_manager import HDF5Manager @@ -15,7 +16,7 @@ def test_datastore_save_load(gravdata: DataFrame, hdf5file: Path): flt = Flight('Test-Flight') - datafile = DataFile('gravity', datetime.now(), Path('tests/test.dat')) + datafile = DataFile(DataType.GRAVITY, datetime.now(), Path('tests/test.dat')) assert HDF5Manager.save_data(gravdata, datafile, path=hdf5file) loaded = HDF5Manager.load_data(datafile, path=hdf5file) assert gravdata.equals(loaded) @@ -29,7 +30,7 @@ def test_datastore_save_load(gravdata: DataFrame, hdf5file: Path): with pytest.raises(FileNotFoundError): HDF5Manager.load_data(datafile, path=Path('.nonexistent.hdf5')) - empty_datafile = DataFile('trajectory', datetime.now(), + empty_datafile = DataFile(DataType.TRAJECTORY, datetime.now(), Path('tests/test.dat')) with pytest.raises(KeyError): HDF5Manager.load_data(empty_datafile, path=hdf5file) @@ -37,8 +38,8 @@ def test_datastore_save_load(gravdata: DataFrame, hdf5file: Path): def test_ds_metadata(gravdata: DataFrame, hdf5file: Path): flt = Flight('TestMetadataFlight') - datafile = DataFile('gravity', datetime.now(), source_path=Path('./test.dat')) - empty_datafile = DataFile('trajectory', datetime.now(), + datafile = DataFile(DataType.GRAVITY, datetime.now(), source_path=Path('./test.dat')) + empty_datafile = DataFile(DataType.TRAJECTORY, datetime.now(), Path('tests/test.dat')) HDF5Manager.save_data(gravdata, datafile, path=hdf5file) diff --git a/tests/test_models.py b/tests/test_models.py index 7baaa93..fd6ea74 100644 --- a/tests/test_models.py +++ b/tests/test_models.py @@ -13,6 +13,7 @@ import pytest import pandas as pd +from dgp.core import DataType from dgp.core.models.project import AirborneProject from dgp.core.hdf5_manager import HDF5Manager from dgp.core.models.datafile import DataFile @@ -112,8 +113,8 @@ def test_gravimeter(): def test_dataset(tmpdir): path = Path(tmpdir).joinpath("test.hdf5") - df_grav = DataFile('gravity', datetime.utcnow(), Path('gravity.dat')) - df_traj = DataFile('trajectory', datetime.utcnow(), Path('gps.dat')) + df_grav = DataFile(DataType.GRAVITY, datetime.utcnow(), Path('gravity.dat')) + df_traj = DataFile(DataType.TRAJECTORY, datetime.utcnow(), Path('gps.dat')) dataset = DataSet(df_grav, df_traj) assert df_grav == dataset.gravity From 57e1c5802ea9090fe83a368c18234f6a4e96625d Mon Sep 17 00:00:00 2001 From: Zachery Brady Date: Mon, 6 Aug 2018 10:25:28 -0600 Subject: [PATCH 174/236] Improve project serialization API Refactor project encoder/decoders to utilize a declarative mapping instead of if/else if chains to determine method for serializing and de-serializing specific objects. Updated documentation in ProjectDecoder and ProjectEncoder to reflect removal of magic '_parent' attr, and use of Reference objects. --- dgp/core/models/project.py | 147 ++++++++++++++++++++---------------- tests/test_serialization.py | 2 +- 2 files changed, 83 insertions(+), 66 deletions(-) diff --git a/dgp/core/models/project.py b/dgp/core/models/project.py index 50047e9..d568273 100644 --- a/dgp/core/models/project.py +++ b/dgp/core/models/project.py @@ -1,16 +1,10 @@ # -*- coding: utf-8 -*- - -""" -Project Classes V2 -JSON Serializable classes, separated from the GUI control plane -""" - import json import json.decoder import datetime from pathlib import Path from pprint import pprint -from typing import Optional, List, Any, Dict, Union +from typing import Optional, List, Any, Dict, Union, Tuple, Callable from dgp.core import DataType from dgp.core.types.reference import Reference @@ -27,6 +21,26 @@ 'DataSegment': DataSegment, 'Gravimeter': Gravimeter} +ObjectTransform = Tuple[str, Callable[[object], str]] + +# Declare object -> serialized value transforms +object_value_map: Dict[object, ObjectTransform] = { + OID: ('base_uuid', lambda o: o.base_uuid), + datetime.datetime: ('timestamp', lambda o: o.timestamp()), + datetime.date: ('ordinal', lambda o: o.toordinal()), + Path: ('path', lambda o: f'{o.resolve()!s}'), + DataType: ('value', lambda o: o.value) +} + +# Declare serialized value -> object transforms +value_object_map: Dict[str, Callable[[Dict], str]] = { + OID.__name__: lambda x: OID(**x), + datetime.datetime.__name__: lambda x: datetime.datetime.fromtimestamp(*x.values()), + datetime.date.__name__: lambda x: datetime.date.fromordinal(*x.values()), + Path.__name__: lambda x: Path(*x.values()), + DataType.__name__: lambda x: DataType(**x) +} + class ProjectEncoder(json.JSONEncoder): """ @@ -44,13 +58,18 @@ class ProjectEncoder(json.JSONEncoder): to determine how to decode and reconstruct the object into a Python native object. - The parent/_parent attribute is another special case in the - Serialization/De-serialization of the project. A parent can be set - on any project child object (Flight, FlightLine, DataFile, Gravimeter etc.) - which is simply a reference to the object that contains it within the hierarchy. - As this creates a circular reference, for any _parent attribute of a project - entity, the parent's OID is instead serialized - which allows us to recreate - the structure upon decoding with :obj:`ProjectDecoder` + The object_value_map is used to declare various types and their serialization + method (a lambda function). This provides an extensible way to add new types + to the projects serialization process. Note that the inverse + (de-serialization) declaration should also be added to the value_object_map + when adding any new type. + + The :class:`Reference` object is a special case; project model objects may + utilize the Reference class to maintain links to a parent or other related + model object. The Project Encoder/Decoders identify Reference objects and + serialize the metadata of the Reference in order to facilitate re-linking + during de-serialization. + """ def default(self, o: Any): @@ -60,29 +79,27 @@ def default(self, o: Any): attrs['_type'] = o.__class__.__name__ attrs['_module'] = o.__class__.__module__ return attrs - j_complex = {'_type': o.__class__.__name__, - '_module': o.__class__.__module__} - if isinstance(o, OID): - j_complex['base_uuid'] = o.base_uuid - return j_complex - if isinstance(o, datetime.datetime): - j_complex['timestamp'] = o.timestamp() - return j_complex - if isinstance(o, datetime.date): - j_complex['ordinal'] = o.toordinal() - return j_complex - if isinstance(o, Path): - # Path requires special handling due to OS dependant internal classes - return {'_type': 'Path', 'path': str(o.resolve())} - if isinstance(o, Reference): + json_str = {'_type': o.__class__.__name__, + '_module': o.__class__.__module__} + if o.__class__ in object_value_map: + attr, serializer = object_value_map[o.__class__] + json_str[attr] = serializer(o) + return json_str + elif isinstance(o, Path): + # Path requires special handling due to OS dependant class names + json_str['_type'] = 'Path' + json_str['path'] = str(o.resolve()) + return json_str + elif isinstance(o, Reference): + # Reference is a special case, as it can return None return o.serialize() - if isinstance(o, DataType): - j_complex['value'] = o.value - return j_complex return super().default(o) +JsonRef = Tuple[str, str, str] + + class ProjectDecoder(json.JSONDecoder): """ ProjectDecoder is a custom JSONDecoder object which enables us to de-serialize @@ -90,34 +107,29 @@ class ProjectDecoder(json.JSONDecoder): represented in a tree-type hierarchy. Objects in the tree keep a reference to their parent to facilitate a variety of actions. - The :obj:`ProjectEncoder` serializes any references with the key '_parent' into - a serialized OID type. - - All project entities are decoded and a reference is stored in an internal registry - to facilitate the re-linking of parent/child entities after decoding is complete. - - The decoder (this class), will then inspect each object passed to its object_hook - for a 'parent' attribute (leading _ are stripped); objects with a parent attribute - are added to an internal map, mapping the child's UID to the parent's UID. + All project entities are decoded and a reference is stored in an internal + registry (keyed by UID) to facilitate the re-linking of :class:`Reference` + entities after decoding is complete. A second pass is made over the decoded project structure due to the way the - JSON is decoded (depth-first), such that the deepest nested children will contain - references to a parent object which has not been decoded yet. - This allows us to store only a single canonical serialized representation of the - parent objects in the hierarchy, and then assemble the references after the fact. + JSON is decoded (depth-first), such that the deepest nested children may + contain references to a parent object which has not been decoded yet. + This allows us to store only a single canonical serialized representation of + the parent objects in the hierarchy, and then assemble the references after + the fact. + """ def __init__(self, klass): super().__init__(object_hook=self.object_hook) self._registry = {} - self._references = [] + self._references: List[JsonRef] = [] self._klass = klass def decode(self, s, _w=json.decoder.WHITESPACE.match): decoded = super().decode(s) # Re-link References - for ref in self._references: - parent_uid, attr, child_uid = ref + for parent_uid, attr, child_uid in self._references: parent = self._registry[parent_uid] child = self._registry[child_uid] setattr(parent, attr, child) @@ -130,17 +142,27 @@ def object_hook(self, json_o: dict): the result up to the next level object. Thus we can re-assemble the entire Project hierarchy given that all classes can be created via their __init__ methods - (i.e. must accept passing child objects through a parameter) + (i.e. they must accept passing child objects through a parameter) - The _type attribute is expected (and injected during serialization), for any - custom objects which should be processed by the project_hook + The _type attribute is expected (and injected during serialization), for + any custom objects which should be processed by the project_hook. The type of the current project class (or sub-class) is injected into the class map which allows for this object hook to be utilized by any inheritor without modification. + The value_object_map dictionary is used to define custom de-serialization + routines for specific objects in a declarative fashion. This is due to + the non-uniform way in which various objects are serialized and + de-serialized. + For example a :obj:`datetime` object's serial representation is its float + 'timestamp' value. In order to reconstruct the datetime object we must + call datetime.fromtimestamp(ts). Thus we need some object specific + declarations to de-serialize certain types. + """ if '_type' not in json_o: + # JSON objects without _type are interpreted as Python dictionaries return json_o _type = json_o.pop('_type') try: @@ -149,21 +171,15 @@ def object_hook(self, json_o: dict): _module = None params = {key.lstrip('_'): value for key, value in json_o.items()} - if _type == OID.__name__: - return OID(**params) - elif _type == datetime.datetime.__name__: - return datetime.datetime.fromtimestamp(*params.values()) - elif _type == datetime.date.__name__: - return datetime.date.fromordinal(*params.values()) - elif _type == Path.__name__: - return Path(*params.values()) - elif _type == DataType.__name__: - return DataType(*params.values()) + if _type in value_object_map: + factory = value_object_map[_type] + return factory(params) elif _type == Reference.__name__: + # References are a special case, None is returned as an interim val self._references.append((json_o['parent'], json_o['attr'], json_o['ref'])) return None else: - # Handle project entity types + # Handle project entity types (also inject the Project sub-class) klass = {self._klass.__name__: self._klass, **project_entities}.get(_type, None) if klass is None: # pragma: no cover raise AttributeError(f"Unhandled class {_type} in JSON data. Class is not defined" @@ -171,13 +187,12 @@ def object_hook(self, json_o: dict): else: try: instance = klass(**params) + self._registry[instance.uid] = instance + return instance except TypeError: # pragma: no cover # This may occur if an outdated project JSON file is loaded print(f'Exception instantiating class {klass} with params {params}') raise - else: - self._registry[instance.uid] = instance - return instance class GravityProject: @@ -218,6 +233,7 @@ class GravityProject: :class:`AirborneProject` """ + def __init__(self, name: str, path: Path, description: Optional[str] = None, create_date: Optional[datetime.datetime] = None, modify_date: Optional[datetime.datetime] = None, @@ -318,6 +334,7 @@ class AirborneProject(GravityProject): See :class:`GravityProject` for permitted key-word arguments. """ + def __init__(self, **kwargs): super().__init__(**kwargs) self._flights = kwargs.get('flights', []) diff --git a/tests/test_serialization.py b/tests/test_serialization.py index d5fdbfa..cc88e7e 100644 --- a/tests/test_serialization.py +++ b/tests/test_serialization.py @@ -27,7 +27,7 @@ def test_project_serialize(project: AirborneProject, tmpdir): decoded_dict = json.loads(encoded) assert project.name == decoded_dict['name'] - assert {'_type': 'Path', 'path': str(project.path.resolve())} == decoded_dict['path'] + assert {'_type': 'Path', '_module': 'pathlib', 'path': str(project.path.resolve())} == decoded_dict['path'] for flight_obj in decoded_dict['flights']: assert '_type' in flight_obj and flight_obj['_type'] == 'Flight' From 8e81532effd0608e8f19c0716d55b35e546d8cff Mon Sep 17 00:00:00 2001 From: Zachery Brady Date: Mon, 6 Aug 2018 10:47:51 -0600 Subject: [PATCH 175/236] Fix project to_json method to prevent corruption. Update base project to_json method to perform the json serialization and *then* write to file only if the serialization is completely successful. This should prevent corruption of an entire project file due to an error in the serialization code. --- dgp/core/controllers/project_controllers.py | 14 ++++----- dgp/core/models/project.py | 32 +++++++++++++++++---- 2 files changed, 33 insertions(+), 13 deletions(-) diff --git a/dgp/core/controllers/project_controllers.py b/dgp/core/controllers/project_controllers.py index d4049a4..a82720c 100644 --- a/dgp/core/controllers/project_controllers.py +++ b/dgp/core/controllers/project_controllers.py @@ -4,7 +4,7 @@ import logging import warnings from pathlib import Path -from typing import Union, List, Generator +from typing import Union, List, Generator, cast from PyQt5.QtCore import Qt, QRegExp from PyQt5.QtGui import QColor, QStandardItemModel, QIcon, QRegExpValidator @@ -148,7 +148,7 @@ def meter_model(self) -> QStandardItemModel: def flight_model(self) -> QStandardItemModel: return self.flights.internal_model - def add_child(self, child: Union[Flight, Gravimeter]) -> Union[FlightController, GravimeterController, None]: + def add_child(self, child: Union[Flight, Gravimeter]) -> Union[FlightController, GravimeterController]: if isinstance(child, Flight): controller = FlightController(child, project=self) self.flights.appendRow(controller) @@ -187,7 +187,7 @@ def get_parent(self) -> ProjectTreeModel: return self.model() def get_child(self, uid: Union[str, OID]) -> IFlightController: - return super().get_child(uid) + return cast(IFlightController, super().get_child(uid)) @property def active_child(self) -> IFlightController: @@ -198,11 +198,11 @@ def activate_child(self, uid: OID, exclusive: bool = True, child: IFlightController = super().activate_child(uid, exclusive, False) if emit: try: - self.get_parent().tabOpenRequested.emit(child.uid, child, child.get_attr('name')) + self.get_parent().item_activated(child.index()) + # self.get_parent().tabOpenRequested.emit(child.uid, child, + # child.get_attr('name')) except AttributeError: - warnings.warn(f"project model not set for project " - f"{self.get_attr('name')}") - + self.log.warning(f"project {self.get_attr('name')} has no parent") return child def set_active(self, state: bool): diff --git a/dgp/core/models/project.py b/dgp/core/models/project.py index d568273..1d39cb0 100644 --- a/dgp/core/models/project.py +++ b/dgp/core/models/project.py @@ -2,8 +2,8 @@ import json import json.decoder import datetime +import warnings from pathlib import Path -from pprint import pprint from typing import Optional, List, Any, Dict, Union, Tuple, Callable from dgp.core import DataType @@ -311,14 +311,34 @@ def from_json(cls, json_str: str) -> 'GravityProject': return json.loads(json_str, cls=ProjectDecoder, klass=cls) def to_json(self, to_file=False, indent=None) -> Union[str, bool]: - # TODO: Dump file to a temp file, then if successful overwrite the original - # Else an error in the serialization process can corrupt the entire project + """Encode the Project to a JSON string, optionally writing to disk + + This function will perform the json encoding operation and store the + result in memory before writing the result to the project file + (if to_file is True), this should prevent corruption of the project file + in cases where the JSON encoder fails partway through the serialization, + leaving the output file in an inconsistent state. + + Parameters + ---------- + to_file : bool, optional + If False the JSON string will be returned to the caller + If True the JSON string will be written to the project file + indent : None, int, optional + Optionally provide an indent value to nicely format the JSON output + """ + try: + json_s = json.dumps(self, cls=ProjectEncoder, indent=indent) + except TypeError as e: + warnings.warn(f"Unable to encode project: {e!s}") + return False + if to_file: with self.path.joinpath(self._projectfile).open('w') as fp: - json.dump(self, fp, cls=ProjectEncoder, indent=indent) - # pprint(json.dumps(self, cls=ProjectEncoder, indent=2)) + fp.write(json_s) return True - return json.dumps(self, cls=ProjectEncoder, indent=indent) + else: + return json_s class AirborneProject(GravityProject): From cb4759ad3f8f110a7c034baabf5d9838a25d9a70 Mon Sep 17 00:00:00 2001 From: Zachery Brady Date: Mon, 6 Aug 2018 10:53:02 -0600 Subject: [PATCH 176/236] Update DataFileController inheritance Update DataFileController to use new IBaseController interface. Add safety checks to DataSetController to check that gravity/trajectory are not None before executing HDF load (reduce unnecessary warnings) --- dgp/core/controllers/datafile_controller.py | 22 ++++++++++----------- dgp/core/controllers/dataset_controller.py | 4 ++++ 2 files changed, 15 insertions(+), 11 deletions(-) diff --git a/dgp/core/controllers/datafile_controller.py b/dgp/core/controllers/datafile_controller.py index 4d6e351..11d5c5b 100644 --- a/dgp/core/controllers/datafile_controller.py +++ b/dgp/core/controllers/datafile_controller.py @@ -4,27 +4,25 @@ from PyQt5.QtGui import QIcon from dgp.core import DataType +from dgp.core.hdf5_manager import HDF5Manager from dgp.core.oid import OID -from dgp.core.controllers.controller_interfaces import IDataSetController -from dgp.core.controllers.controller_interfaces import IFlightController -from dgp.core.controllers.controller_mixins import AttributeProxy from dgp.core.types.enumerations import Icon +from dgp.core.controllers.controller_interfaces import IDataSetController, IBaseController from dgp.core.controllers.controller_helpers import show_in_explorer from dgp.core.models.datafile import DataFile -class DataFileController(QStandardItem, AttributeProxy): +class DataFileController(IBaseController): def __init__(self, datafile: DataFile, dataset=None): super().__init__() self._datafile = datafile - self._dataset = dataset # type: IDataSetController + self._dataset: IDataSetController = dataset self.log = logging.getLogger(__name__) self.set_datafile(datafile) self._bindings = [ - ('addAction', ('Describe', self._describe)), - # ('addAction', ('Delete <%s>' % self._datafile, lambda: None)) + ('addAction', ('Properties', self._properties_dlg)), ('addAction', (QIcon(Icon.OPEN_FOLDER.value), 'Show in Explorer', self._launch_explorer)) ] @@ -64,10 +62,12 @@ def set_datafile(self, datafile: DataFile): elif self._datafile.group is DataType.TRAJECTORY: self.setIcon(QIcon(Icon.TRAJECTORY.value)) - def _describe(self): - pass - # df = self.flight.load_data(self) - # self.log.debug(df.describe()) + def _properties_dlg(self): + if self._datafile is None: + return + # TODO: Launch dialog to show datafile properties (name, path, data etc) + data = HDF5Manager.load_data(self._datafile, self.dataset.hdfpath) + self.log.info(f'\n{data.describe()}') def _launch_explorer(self): if self._datafile is not None: diff --git a/dgp/core/controllers/dataset_controller.py b/dgp/core/controllers/dataset_controller.py index bada5a7..7a9d5b2 100644 --- a/dgp/core/controllers/dataset_controller.py +++ b/dgp/core/controllers/dataset_controller.py @@ -144,6 +144,8 @@ def _update_channel_model(self): def gravity(self) -> Union[DataFrame]: if not self._gravity.empty: return self._gravity + if self._dataset.gravity is None: + return self._gravity try: self._gravity = HDF5Manager.load_data(self._dataset.gravity, self.hdfpath) except Exception as e: @@ -155,6 +157,8 @@ def gravity(self) -> Union[DataFrame]: def trajectory(self) -> Union[DataFrame, None]: if not self._trajectory.empty: return self._trajectory + if self._dataset.trajectory is None: + return self._trajectory try: self._trajectory = HDF5Manager.load_data(self._dataset.trajectory, self.hdfpath) except Exception as e: From fefb67ca8da56caf79f09b9208dad13877d8a3c7 Mon Sep 17 00:00:00 2001 From: Zachery Brady Date: Mon, 6 Aug 2018 10:55:58 -0600 Subject: [PATCH 177/236] Fix coverage badge to point to correct branch. --- README.rst | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/README.rst b/README.rst index d8d212b..35c9c74 100644 --- a/README.rst +++ b/README.rst @@ -7,7 +7,7 @@ DGP (Dynamic Gravity Processor) :target: https://ci.appveyor.com/project/bradyzp/dgp .. image:: https://coveralls.io/repos/github/DynamicGravitySystems/DGP/badge.svg?branch=feature%2Fproject-structure - :target: https://coveralls.io/github/DynamicGravitySystems/DGP?branch=feature%2Fproject-structure + :target: https://coveralls.io/github/DynamicGravitySystems/DGP?branch=develop .. image:: https://readthedocs.org/projects/dgp/badge/?version=develop :target: https://dgp.readthedocs.io/en/develop From 566527e8b7cbb4e4dd2c9d5ec69b6997be623ecc Mon Sep 17 00:00:00 2001 From: Zachery Brady Date: Mon, 6 Aug 2018 11:30:56 -0600 Subject: [PATCH 178/236] Cleanup and minor documentation updates. Cleanup various unused imports. Update documentation in FlightController to reflect recent changes. Add docstrings to various methods in controller_interfaces --- dgp/core/__init__.py | 5 ++++ dgp/core/controllers/controller_interfaces.py | 27 ++++++++++++++----- dgp/core/controllers/flight_controller.py | 14 +++++----- dgp/gui/views/project_tree_view.py | 8 +++--- tests/test_serialization.py | 2 +- 5 files changed, 39 insertions(+), 17 deletions(-) diff --git a/dgp/core/__init__.py b/dgp/core/__init__.py index d725f46..14c743f 100644 --- a/dgp/core/__init__.py +++ b/dgp/core/__init__.py @@ -1,2 +1,7 @@ # -*- coding: utf-8 -*- + +__all__ = ['OID', 'Reference', 'DataType', 'Icon'] + +from .oid import OID +from .types.reference import Reference from .types.enumerations import DataType, Icon, MeterTypes, GravityTypes diff --git a/dgp/core/controllers/controller_interfaces.py b/dgp/core/controllers/controller_interfaces.py index 77a18de..a437a84 100644 --- a/dgp/core/controllers/controller_interfaces.py +++ b/dgp/core/controllers/controller_interfaces.py @@ -21,6 +21,7 @@ """ MenuBinding = Tuple[str, Tuple[Any, ...]] +MaybeChild = Union['IChild', None] class DGPObject: @@ -50,13 +51,16 @@ class IChild(DGPObject): """ def get_parent(self) -> 'IParent': + """Return the parent object of this child""" raise NotImplementedError def set_parent(self, parent) -> None: + """Set the parent object of this child""" raise NotImplementedError @property def can_activate(self) -> bool: + """Return whether this child can be activated""" return False @property @@ -125,10 +129,10 @@ def add_child(self, child) -> 'IChild': """ raise NotImplementedError - def remove_child(self, child, confirm: bool = True) -> None: + def remove_child(self, child, confirm: bool = True) -> bool: raise NotImplementedError - def get_child(self, uid: Union[str, OID]) -> IChild: + def get_child(self, uid: Union[str, OID]) -> MaybeChild: """Get a child of this object by matching OID Parameters @@ -148,7 +152,7 @@ def get_child(self, uid: Union[str, OID]) -> IChild: return child def activate_child(self, uid: OID, exclusive: bool = True, - emit: bool = False) -> Union[IChild, None]: + emit: bool = False) -> MaybeChild: """Activate a child referenced by the given OID, and return a reference to the activated child. Children may be exclusively activated (default behavior), in which case @@ -179,9 +183,14 @@ def activate_child(self, uid: OID, exclusive: bool = True, return child @property - def active_child(self) -> Union[IChild, None]: - """Returns the first active child object, or None if no children are - active. + def active_child(self) -> MaybeChild: + """Get the active child of this parent. + + Returns + ------- + IChild, None + The first active child, or None if there are no children which are + active. """ return next((child for child in self.children if child.is_active), None) @@ -251,6 +260,12 @@ class IMeterController(IBaseController, IChild): class IDataSetController(IBaseController, IChild): + def get_parent(self) -> IFlightController: + raise NotImplementedError + + def set_parent(self, parent) -> None: + raise NotImplementedError + @property def hdfpath(self) -> Path: raise NotImplementedError diff --git a/dgp/core/controllers/flight_controller.py b/dgp/core/controllers/flight_controller.py index 1bf557e..7d868fc 100644 --- a/dgp/core/controllers/flight_controller.py +++ b/dgp/core/controllers/flight_controller.py @@ -25,26 +25,28 @@ class FlightController(IFlightController): through a FlightController in order to ensure that the data and presentation state is kept synchronized. - As a child of :obj:`QStandardItem` the FlightController can be directly + As a subclass of :obj:`QStandardItem` the FlightController can be directly added as a child to another QStandardItem, or as a row/child in a :obj:`QAbstractItemModel` or :obj:`QStandardItemModel` The default display behavior is to provide the Flights Name. A :obj:`QIcon` or string path to a resource can be provided for decoration. - The FlightController class also acts as a proxy to the underlying :obj:`Flight` - by implementing __getattr__, and allowing access to any @property decorated - methods of the Flight. + FlightController implements the AttributeProxy mixin (via IBaseController), + which allows access to the underlying :class:`Flight` attributes via the + get_attr and set_attr methods. Parameters ---------- flight : :class:`Flight` - project : :class:`IAirborneController`, Optional + The underlying Flight model object to wrap with this controller + project : :class:`IAirborneController` + The parent (owning) project for this flight controller """ inherit_context = True - def __init__(self, flight: Flight, project: IAirborneController = None): + def __init__(self, flight: Flight, project: IAirborneController): """Assemble the view/controller repr from the base flight object.""" super().__init__() self.log = logging.getLogger(__name__) diff --git a/dgp/gui/views/project_tree_view.py b/dgp/gui/views/project_tree_view.py index 4760ec1..3a82ad7 100644 --- a/dgp/gui/views/project_tree_view.py +++ b/dgp/gui/views/project_tree_view.py @@ -1,15 +1,15 @@ # -*- coding: utf-8 -*- -from typing import Optional, Tuple, Any, List +from typing import Optional, List from PyQt5 import QtCore -from PyQt5.QtCore import QObject, QModelIndex, pyqtSlot, pyqtBoundSignal -from PyQt5.QtGui import QContextMenuEvent, QStandardItem +from PyQt5.QtCore import QObject, QModelIndex, pyqtSlot +from PyQt5.QtGui import QContextMenuEvent from PyQt5.QtWidgets import QTreeView, QMenu from dgp.core.controllers.controller_interfaces import (IAirborneController, IChild, IBaseController, - MenuBinding, IParent) + MenuBinding) from dgp.core.controllers.project_treemodel import ProjectTreeModel diff --git a/tests/test_serialization.py b/tests/test_serialization.py index cc88e7e..a0a5bf0 100644 --- a/tests/test_serialization.py +++ b/tests/test_serialization.py @@ -131,7 +131,7 @@ def test_reference_serialization(): flights=[flt]) prj.add_child(sensor) assert flt.parent is prj - assert sensor == ds.sensor + assert sensor is ds.sensor serialized0 = prj.to_json(indent=2) From 090202418047f814d44f33680d63a61e5fcae353 Mon Sep 17 00:00:00 2001 From: Zachery Brady Date: Wed, 8 Aug 2018 07:56:25 -0600 Subject: [PATCH 179/236] Cleanup - remove dead code/comments Delete unused/commented code in project_controllers and dataset_controller. --- dgp/core/controllers/dataset_controller.py | 13 ------------- dgp/core/controllers/project_controllers.py | 3 --- 2 files changed, 16 deletions(-) diff --git a/dgp/core/controllers/dataset_controller.py b/dgp/core/controllers/dataset_controller.py index 7a9d5b2..21fa336 100644 --- a/dgp/core/controllers/dataset_controller.py +++ b/dgp/core/controllers/dataset_controller.py @@ -185,18 +185,6 @@ def align(self): self._trajectory = n_traj self.log.info(f'DataFrame aligned.') - # def slice(self, segment_uid: OID): - # df = self.dataframe() - # if df is None: - # return None - # - # segment = self.get_segment(segment_uid).datamodel - # # start = df.index.searchsorted(segment.start) - # # stop = df.index.searchsorted(segment.stop) - # - # segment_df = df.loc[segment.start:segment.stop] - # return segment_df - def get_parent(self) -> IFlightController: return self._flight @@ -206,7 +194,6 @@ def set_parent(self, parent: IFlightController) -> None: self._flight.add_child(self.datamodel) def add_datafile(self, datafile: DataFile) -> None: - # datafile.set_parent(self) if datafile.group is DataType.GRAVITY: self.datamodel.gravity = datafile self._grav_file.set_datafile(datafile) diff --git a/dgp/core/controllers/project_controllers.py b/dgp/core/controllers/project_controllers.py index a82720c..ac6d8c2 100644 --- a/dgp/core/controllers/project_controllers.py +++ b/dgp/core/controllers/project_controllers.py @@ -2,7 +2,6 @@ import functools import itertools import logging -import warnings from pathlib import Path from typing import Union, List, Generator, cast @@ -199,8 +198,6 @@ def activate_child(self, uid: OID, exclusive: bool = True, if emit: try: self.get_parent().item_activated(child.index()) - # self.get_parent().tabOpenRequested.emit(child.uid, child, - # child.get_attr('name')) except AttributeError: self.log.warning(f"project {self.get_attr('name')} has no parent") return child From 23ea182071769c723b8be628fce5a5237ce0f306 Mon Sep 17 00:00:00 2001 From: Zachery Brady Date: Wed, 8 Aug 2018 14:50:09 -0600 Subject: [PATCH 180/236] Minor fixes for testing QOL and bad function invocation in trajectory ingestor. Added conditional skip in tests/test_timesync which will skip the test class if the "development" environment variable is set. This test suite can take from 30 to 60s to complete, which is undesirable during typical development testing. Fixed argument in trajectory_ingestor::import_trajectory leap_seconds invocation, the leap_seconds function only accepts keyword arguments, and will raise an exception when passed a positional argument. --- dgp/lib/trajectory_ingestor.py | 2 +- tests/test_timesync.py | 2 ++ 2 files changed, 3 insertions(+), 1 deletion(-) diff --git a/dgp/lib/trajectory_ingestor.py b/dgp/lib/trajectory_ingestor.py index a978802..0e90841 100644 --- a/dgp/lib/trajectory_ingestor.py +++ b/dgp/lib/trajectory_ingestor.py @@ -110,7 +110,7 @@ def import_trajectory(filepath, delim_whitespace=False, interval=0, # remove leap second if is_utc: # TO DO: Check dates at beginning and end to determine whether a leap second was added in the middle of the survey. - shift = leap_seconds(df.index[0]) + shift = leap_seconds(datetime=df.index[0]) df.index = df.index.shift(-shift, freq='S') # set or infer the interval diff --git a/tests/test_timesync.py b/tests/test_timesync.py index 854bfa2..6f63712 100644 --- a/tests/test_timesync.py +++ b/tests/test_timesync.py @@ -1,4 +1,5 @@ # coding: utf-8 +import os from .context import dgp import unittest @@ -8,6 +9,7 @@ from dgp.lib.timesync import find_time_delay, shift_frame +@unittest.skipIf(os.getenv("development", False), "Skip slow unit-tests in dev env") class TestTimesync(unittest.TestCase): def test_timedelay_array(self): rnd_offset = 1.1 From 75739c6a5ebdb73d676b5c4fc42c5e8d4550914d Mon Sep 17 00:00:00 2001 From: Zachery Brady Date: Tue, 17 Jul 2018 08:11:47 -0600 Subject: [PATCH 181/236] Add test-driven re-write of the PyQtGridPlotWidget Improved API for GridPlotWidget class, removes a layer of indirection where the plot widget was encapsulated within the outer class. Tests added for most API calls in the new GridPlotWidget class. Added new PolyAxis class which will replace DateAxis, this Axis can be switched to display DateTime labels, or scalar labels. --- dgp/gui/plotting/backends.py | 245 +++++++++++++++++++++++++++++++---- dgp/gui/plotting/helpers.py | 51 ++++++++ tests/test_plots.py | 219 +++++++++++++++++++++++++++++++ 3 files changed, 492 insertions(+), 23 deletions(-) create mode 100644 tests/test_plots.py diff --git a/dgp/gui/plotting/backends.py b/dgp/gui/plotting/backends.py index 95d0814..80b2ea8 100644 --- a/dgp/gui/plotting/backends.py +++ b/dgp/gui/plotting/backends.py @@ -1,34 +1,233 @@ # -*- coding: utf-8 -*- from itertools import cycle -from typing import List +from typing import List, Union, Tuple, Generator, Dict import pandas as pd from pyqtgraph.widgets.GraphicsView import GraphicsView from pyqtgraph.graphicsItems.GraphicsLayout import GraphicsLayout from pyqtgraph.widgets.PlotWidget import PlotItem -from pyqtgraph import SignalProxy - -from .helpers import DateAxis - -""" -Rationale for StackedMPLWidget and StackedPGWidget: -Each of these classes should act as a drop-in replacement for the other, -presenting as a single widget that can be added to a Qt Layout. -Both of these classes are designed to create a variable number of plots -'stacked' on top of each other - as in rows. -MPLWidget will thus contain a series of Axes classes which can be used to -plot on -PGWidget will contain a series of PlotItem classes which likewise can be used to -plot. - -It remains to be seen if the Interface/ABC AbstractSeriesPlotter and its descendent -classes PlotWidgetWrapper and MPLAxesWrapper are necessary - the intent of -these classes was to wrap a PlotItem or Axes and provide a unified standard -interface for plotting. However, the Stacked*Widget classes might nicely -encapsulate what was intended there. -""" -__all__ = ['PyQtGridPlotWidget'] +from pyqtgraph import SignalProxy, PlotDataItem, ViewBox + +from .helpers import DateAxis, PolyAxis + +__all__ = ['GridPlotWidget', 'PyQtGridPlotWidget'] + +LINE_COLORS = ['#1f77b4', '#ff7f0e', '#2ca02c', '#d62728', '#9467bd', + '#8c564b', '#e377c2', '#7f7f7f', '#bcbd22', '#17becf'] + + +class GridPlotWidget(GraphicsView): + """ + Base plotting class used to create a group of 1 or more :class:`PlotItem` + in a layout (rows/columns). + This class is a subclass of :class:`QWidget` and can be directly added to a + QtWidget based application. + + This is essentially a wrapper around PyQtGraph's GraphicsLayout, which + handles the complexities of creating/laying-out plots in the view. This + class aims to simplify the API for our use cases, and add functionality for + easily plotting pandas Series. + + Parameters + ---------- + rows : int, optional + Rows of plots to generate (stacked from top to bottom), default is 1 + background : optional + Background color for the widget and nested plots. Can be any value + accepted by :func:`mkBrush` or :func:`mkColor` e.g. QColor, hex string, + RGB(A) tuple + grid : bool + If True displays gridlines on the plot surface + sharex : bool + If True links all x-axis values to the first plot + multiy : bool + If True all plots will have a sister plot with its own y-axis and scale + enabling the plotting of 2 (or more) datasets with differing scales on a + single plot surface. + parent + + See Also + -------- + :func:`mkPen` for customizing plot-line pens (creates a QgGui.QPen) + :func:`mkColor` for color options in the plot (creates a QtGui.QColor) + + """ + + def __init__(self, rows=1, cols=1, background='w', grid=True, sharex=False, + multiy=False, parent=None): + super().__init__(background=background, parent=parent) + self.gl = GraphicsLayout(parent=parent) + self.setCentralItem(self.gl) + + self.rows = rows + self.cols = 1 + + self._pens = cycle([{'color': v, 'width': 2} for v in LINE_COLORS]) + self._series = {} # type: Dict[pd.Series: Tuple[str, int, int]] + self._items = {} # type: Dict[PlotDataItem: Tuple[str, int, int]] + + for row in range(self.rows): + axis_items = {'bottom': PolyAxis(orientation='bottom')} + plot: PlotItem = self.gl.addPlot(row=row, col=0, + backround=background, + axisItems=axis_items) + plot.clear() + plot.addLegend(offset=(15, 15)) + plot.showGrid(x=grid, y=grid) + if row > 0 and sharex: + plot.setXLink(self.get_plot(0, 0)) + + self.__signal_proxies = [] + + def get_plot(self, row: int, col: int = 0) -> PlotItem: + return self.gl.getItem(row, col) + + @property + def plots(self) -> Generator[PlotItem, None, None]: + for i in range(self.rows): + yield self.get_plot(i, 0) + + def add_series(self, series: pd.Series, row: int, col: int = 0, + axis: str = 'left'): + """Add a pandas :class:`Series` to the plot at the specified row/column + + Parameters + ---------- + series : :class:`Series` + The Pandas Series to add; series.index and series.values are taken + to be the x and y axis respectively + row : int + col : int + axis : str + 'left' or 'right' - specifies which y-scale the series should be + plotted on. Only has effect if self.multiy is True. + + Returns + ------- + + """ + key = self.make_index(series.name, row, col) + if self.get_series(*key) is not None: + return + + self._series[key] = series + plot = self.get_plot(row, col) + xvals = pd.to_numeric(series.index, errors='coerce') + yvals = pd.to_numeric(series.values, errors='coerce') + item = plot.plot(x=xvals, y=yvals, name=series.name, pen=next(self._pens)) + self._items[key] = item + return item + + def get_series(self, name: str, row, col=0) -> Union[pd.Series, None]: + return self._series.get((name, row, col), None) + + def remove_series(self, name: str, row: int, col: int = 0) -> None: + plot = self.get_plot(row, col) + key = self.make_index(name, row, col) + item = self._items.get(key, None) + if item is None: + return + plot.removeItem(item) + plot.legend.removeItem(name) + del self._series[key] + del self._items[key] + + def clear(self): + for i in range(self.rows): + for j in range(self.cols): + plot = self.get_plot(i, j) + plot.clear() + self._items = {} + self._series = {} + + def remove_plotitem(self, item: PlotDataItem) -> None: + """Alternative method of removing a line by its :class:`PlotDataItem` + reference, as opposed to using remove_series to remove a named series + from a specific plot at row/col index. + + Parameters + ---------- + item : :class:`PlotDataItem` + The PlotDataItem reference to be removed from whichever plot it + resides + + """ + for plot, index in self.gl.items.items(): + if isinstance(plot, PlotItem): + if item in plot.dataItems: + name = item.name() + plot.removeItem(item) + plot.legend.removeItem(name) + + del self._series[self.make_index(name, *index[0])] + + def find_series(self, name: str) -> List[Tuple[str, int, int]]: + indexes = [] + for index, series in self._series.items(): + if series.name == name: + indexes.append(index) + + return indexes + + def set_xaxis_formatter(self, formatter: str, row: int, col: int = 0): + """Allow setting of the X-Axis tick formatter to display DateTime or + scalar values. + This is an explicit call, as opposed to letting the AxisItem infer the + axis type due to the possibility of plotting two series with different + indexes. This may be revised in future. + + Parameters + ---------- + formatter : str + 'datetime' will set the bottom AxisItem to display datetime values + Any other value will set the AxisItem to its default scalar display + row : int + Plot row index + col : int + Plot column index + + """ + plot = self.get_plot(row, col) + axis: PolyAxis = plot.getAxis('bottom') + if formatter.lower() == 'datetime': + axis.timeaxis = True + else: + axis.timeaxis = False + + def get_xlim(self, row: int, col: int = 0): + return self.get_plot(row, col).vb.viewRange()[0] + + def set_xlink(self, linked: bool = True, autorange: bool = False): + base = self.get_plot(0, 0) if linked else None + for i in range(1, self.rows): + plot = self.get_plot(i, 0) + plot.setXLink(base) + if autorange: + plot.autoRange() + + def add_onclick_handler(self, slot, ratelimit: int = 60): # pragma: no cover + """Creates a SignalProxy to forward Mouse Clicked events on the + GraphicsLayout scene to the provided slot. + + Parameters + ---------- + slot : pyqtSlot(MouseClickEvent) + pyqtSlot accepting a :class:`MouseClickEvent` + ratelimit : int, optional + Limit the SignalProxy to an emission rate of `ratelimit` signals/sec + + """ + sp = SignalProxy(self.gl.scene().sigMouseClicked, rateLimit=ratelimit, + slot=slot) + self.__signal_proxies.append(sp) + return sp + + @staticmethod + def make_index(name: str, row: int, col: int = 0): + if name is None or name is '': + raise ValueError("Cannot create plot index from empty name.") + return name, row, col class PyQtGridPlotWidget(GraphicsView): diff --git a/dgp/gui/plotting/helpers.py b/dgp/gui/plotting/helpers.py index dd6fed1..168b277 100644 --- a/dgp/gui/plotting/helpers.py +++ b/dgp/gui/plotting/helpers.py @@ -6,6 +6,57 @@ from pyqtgraph import LinearRegionItem, TextItem, AxisItem +class PolyAxis(AxisItem): + """Subclass of PyQtGraph :class:`AxisItem` which can display tick strings + for a date/time value, or scalar values. + """ + minute = pd.Timedelta(minutes=1).value + hour = pd.Timedelta(hours=1).value + day = pd.Timedelta(days=1).value + + def __init__(self, orientation, **kwargs): + super().__init__(orientation, **kwargs) + self.timeaxis = False + + def dateTickStrings(self, values, scale, spacing): + if not values: + rng = 0 + else: + rng = max(values) - min(values) + + labels = [] + # TODO: Maybe add special tick format for first tick + if rng < self.minute: + fmt = '%H:%M:%S' + + elif rng < self.hour: + fmt = '%H:%M:%S' + elif rng < self.day: + fmt = '%H:%M' + else: + if spacing > self.day: + fmt = '%y:%m%d' + elif spacing >= self.hour: + fmt = '%H' + else: + fmt = '' + + for x in values: + try: + labels.append(pd.to_datetime(x).strftime(fmt)) + except ValueError: # Windows can't handle dates before 1970 + labels.append('') + except OSError: + pass + return labels + + def tickStrings(self, values, scale, spacing): + if self.timeaxis: + return self.dateTickStrings(values, scale, spacing) + else: + return super().tickStrings(values, scale, spacing) + + class DateAxis(AxisItem): minute = pd.Timedelta(minutes=1).value hour = pd.Timedelta(hours=1).value diff --git a/tests/test_plots.py b/tests/test_plots.py new file mode 100644 index 0000000..0337691 --- /dev/null +++ b/tests/test_plots.py @@ -0,0 +1,219 @@ +# -*- coding: utf-8 -*- + +""" +Test/Develop Plots using PyQtGraph for high-performance user-interactive plots +within the application. +""" +import pytest +import numpy as np +import pandas as pd +from PyQt5.QtCore import QObject +from PyQt5.QtWidgets import QWidget, QGraphicsScene +from pyqtgraph import GraphicsLayout, PlotItem, PlotDataItem, LegendItem + +from dgp.gui.plotting.backends import GridPlotWidget +from dgp.gui.plotting.plotters import LineSelectPlot +from dgp.gui.plotting.helpers import PolyAxis +from .context import APP + + +@pytest.fixture +def gravity(gravdata) -> pd.Series: + return gravdata['gravity'] + + +def test_grid_plot_widget_init(): + gpw = GridPlotWidget(rows=2) + assert isinstance(gpw, QWidget) + assert isinstance(gpw, QObject) + + assert isinstance(gpw.centralWidget, GraphicsLayout) + + assert 2 == gpw.rows + assert 1 == gpw.cols + + assert isinstance(gpw.get_plot(row=0), PlotItem) + assert isinstance(gpw.get_plot(row=1), PlotItem) + assert gpw.get_plot(row=2) is None + + p0 = gpw.get_plot(row=0) + assert isinstance(p0.legend, LegendItem) + + +def test_grid_plot_widget_plotting(gravity): + gpw = GridPlotWidget(rows=2) + p0: PlotItem = gpw.get_plot(row=0) + p1: PlotItem = gpw.get_plot(row=1) + + assert 0 == len(p0.dataItems) == len(p1.dataItems) + + assert 'gravity' == gravity.name + assert isinstance(gravity, pd.Series) + + # Plotting an item should return a reference to the PlotDataItem + _grav_item0 = gpw.add_series(gravity, row=0) + assert 1 == len(p0.items) + assert gravity.equals(gpw.get_series(gravity.name, row=0)) + assert isinstance(_grav_item0, PlotDataItem) + assert gravity.name in [label.text for _, label in p0.legend.items] + + # Re-plotting an existing series on the same plot should do nothing + _items_len = len(gpw._items.values()) + gpw.add_series(gravity, row=0) + assert 1 == len(p0.dataItems) + assert _items_len == len(gpw._items.values()) + + # Allow plotting of a duplicate series to a second plot + _items_len = len(gpw._items.values()) + gpw.add_series(gravity, row=1) + assert 1 == len(p1.dataItems) + assert _items_len + 1 == len(gpw._items.values()) + + # Remove series only by name (assuming it can only ever be plotted once) + # or specify which plot to remove it from? + gpw.remove_series(gravity.name, row=0) + assert 0 == len(p0.dataItems) + key = 0, 0, gravity.name + assert gpw._series.get(key, None) is None + assert gpw._items.get(key, None) is None + assert 'gravity' not in [label.text for _, label in p0.legend.items] + + +def test_grid_plot_widget_remove_by_item(gravity): + gpw = GridPlotWidget(rows=2) + p0 = gpw.get_plot(0) + p1 = gpw.get_plot(1) + + _grav_item0 = gpw.add_series(gravity, 0) + _grav_item1 = gpw.add_series(gravity, 1) + assert 1 == len(p0.dataItems) == len(p1.dataItems) + assert _grav_item0 in p0.dataItems + assert _grav_item0 in gpw._items.values() + + gpw.remove_plotitem(_grav_item0) + assert 0 == len(p0.dataItems) + assert 1 == len(p1.dataItems) + assert _grav_item0 not in gpw._items.items() + assert _grav_item0 not in p0.dataItems + assert gpw._series.get((0, 0, 'gravity'), None) is None + + assert 'gravity' not in [label.text for _, label in p0.legend.items] + + +def test_grid_plot_widget_find_series(gravity): + """Test function to find & return all keys for a series identified by name + e.g. if 'gravity' channel is plotted on plot rows 0 and 1, find_series + should return a list of key tuples (row, col, name) where the series is + plotted. + """ + gpw = GridPlotWidget(rows=3) + assert 3 == gpw.rows + + gpw.add_series(gravity, 0) + gpw.add_series(gravity, 2) + + expected = [(gravity.name, 0, 0), (gravity.name, 2, 0)] + result = gpw.find_series(gravity.name) + assert expected == result + + _grav_series0 = gpw.get_series(*result[0]) + assert gravity.equals(_grav_series0) + + +def test_grid_plot_widget_axis_formatting(gravity): + """Test that appropriate axis formatters are automatically added based on + the series index type (numeric or DateTime) + """ + gpw = GridPlotWidget(rows=2) + gpw.add_series(gravity, 1) + + p0 = gpw.get_plot(0) + btm_axis_p0 = p0.getAxis('bottom') + gpw.set_xaxis_formatter(formatter='datetime', row=0) + assert isinstance(btm_axis_p0, PolyAxis) + assert btm_axis_p0.timeaxis + + p1 = gpw.get_plot(1) + btm_axis_p1 = p1.getAxis('bottom') + assert isinstance(btm_axis_p1, PolyAxis) + assert not btm_axis_p1.timeaxis + + +def test_grid_plot_widget_sharex(gravity): + """Test linked vs unlinked x-axis scales""" + gpw_unlinked = GridPlotWidget(rows=2, sharex=False) + + gpw_unlinked.add_series(gravity, 0) + up0_xlim = gpw_unlinked.get_xlim(row=0) + up1_xlim = gpw_unlinked.get_xlim(row=1) + + assert up1_xlim == [0, 1] + assert up0_xlim != up1_xlim + gpw_unlinked.set_xlink(True) + assert gpw_unlinked.get_xlim(row=0) == gpw_unlinked.get_xlim(row=1) + gpw_unlinked.set_xlink(False, autorange=True) + gpw_unlinked.add_series(pd.Series(np.random.rand(len(gravity)), + name='rand'), 1) + assert gpw_unlinked.get_xlim(row=0) != gpw_unlinked.get_xlim(row=1) + + gpw_linked = GridPlotWidget(rows=2, sharex=True) + gpw_linked.add_series(gravity, 0) + assert gpw_linked.get_xlim(row=0) == gpw_linked.get_xlim(row=1) + + +def test_grid_plot_iterator(): + """Test plots generator property for iterating through all plots""" + gpw = GridPlotWidget(rows=5) + count = 0 + for i, plot in enumerate(gpw.plots): + assert isinstance(plot, PlotItem) + plot_i = gpw.get_plot(i, 0) + assert plot_i == plot + count += 1 + + assert gpw.rows == count + + +def test_grid_plot_clear(gravdata): + """Test clearing all series from all plots, or selectively""" + gpw = GridPlotWidget(rows=3) + gpw.add_series(gravdata['gravity'], 0) + gpw.add_series(gravdata['long_accel'], 1) + gpw.add_series(gravdata['cross_accel'], 2) + + assert 3 == len(gpw._items) + p0 = gpw.get_plot(0, 0) + assert 1 == len(p0.dataItems) + + gpw.clear() + + assert 0 == len(gpw._items) + assert 0 == len(p0.dataItems) + + # TODO: Selective clear not yet implemented + + +@pytest.mark.skip("Defer implementation of this") +def test_grid_plot_multi_y(gravdata): + _gravity = gravdata['gravity'] + _longacc = gravdata['long_accel'] + gpw = GridPlotWidget(rows=1, multiy=True) + + gpw.add_series(_gravity, 0) + gpw.add_series(_longacc, 0, axis='right') + p0 = gpw.get_plot(0) + scene: QGraphicsScene = p0.scene() + print(scene.items()) + + assert 1 == len(gpw.get_plot(0).dataItems) + + +@pytest.mark.skip("Not implemented yet") +def test_line_select_plot_init(): + plot = LineSelectPlot(rows=2) + + assert isinstance(plot, QObject) + assert isinstance(plot, QWidget) + + assert 2 == plot.rows + From 3dbf8de79623fe3ba3cf3d51fbfd3f3d56c9a614 Mon Sep 17 00:00:00 2001 From: Zachery Brady Date: Tue, 17 Jul 2018 13:47:09 -0600 Subject: [PATCH 182/236] Update PolyAxis date tickStrings function. Updated and added to the tickStrings function for generating tick strings on a Date/Time axis. Added testing to verify proper tick formats are generated. --- dgp/gui/plotting/backends.py | 10 +- dgp/gui/plotting/helpers.py | 84 +++++++++------ dgp/gui/plotting/plotters.py | 198 ++++++++++++++++++++++++++++++++++- tests/test_plots.py | 64 ++++++++++- 4 files changed, 317 insertions(+), 39 deletions(-) diff --git a/dgp/gui/plotting/backends.py b/dgp/gui/plotting/backends.py index 80b2ea8..176002a 100644 --- a/dgp/gui/plotting/backends.py +++ b/dgp/gui/plotting/backends.py @@ -127,7 +127,7 @@ def remove_series(self, name: str, row: int, col: int = 0) -> None: key = self.make_index(name, row, col) item = self._items.get(key, None) if item is None: - return + raise KeyError(f'Item {key} does not exist.') plot.removeItem(item) plot.legend.removeItem(name) del self._series[key] @@ -154,7 +154,7 @@ def remove_plotitem(self, item: PlotDataItem) -> None: """ for plot, index in self.gl.items.items(): - if isinstance(plot, PlotItem): + if isinstance(plot, PlotItem): # pragma: no branch if item in plot.dataItems: name = item.name() plot.removeItem(item) @@ -165,7 +165,7 @@ def remove_plotitem(self, item: PlotDataItem) -> None: def find_series(self, name: str) -> List[Tuple[str, int, int]]: indexes = [] for index, series in self._series.items(): - if series.name == name: + if series.name == name: # pragma: no branch indexes.append(index) return indexes @@ -227,10 +227,10 @@ def add_onclick_handler(self, slot, ratelimit: int = 60): # pragma: no cover def make_index(name: str, row: int, col: int = 0): if name is None or name is '': raise ValueError("Cannot create plot index from empty name.") - return name, row, col + return name.lower(), row, col -class PyQtGridPlotWidget(GraphicsView): +class PyQtGridPlotWidget(GraphicsView): # pragma: no cover # TODO: Use multiple Y-Axes to plot 2 lines of different scales # See pyqtgraph/examples/MultiplePlotAxes.py colors = ['#1f77b4', '#ff7f0e', '#2ca02c', '#d62728', '#9467bd', diff --git a/dgp/gui/plotting/helpers.py b/dgp/gui/plotting/helpers.py index 168b277..bbff371 100644 --- a/dgp/gui/plotting/helpers.py +++ b/dgp/gui/plotting/helpers.py @@ -10,54 +10,78 @@ class PolyAxis(AxisItem): """Subclass of PyQtGraph :class:`AxisItem` which can display tick strings for a date/time value, or scalar values. """ - minute = pd.Timedelta(minutes=1).value - hour = pd.Timedelta(hours=1).value day = pd.Timedelta(days=1).value + week = pd.Timedelta(weeks=1).value def __init__(self, orientation, **kwargs): super().__init__(orientation, **kwargs) self.timeaxis = False - - def dateTickStrings(self, values, scale, spacing): - if not values: - rng = 0 - else: - rng = max(values) - min(values) + # Define time-format scales for time-range <= key + self._timescales = { + pd.Timedelta(seconds=1).value: '', + pd.Timedelta(minutes=1).value: '%M:%S', + pd.Timedelta(hours=1).value: '%H:%M', + self.day: '%d %H:%M', + self.week: '%m-%d %H' + } + + def dateTickStrings(self, values, spacing): + rng = max(values) - min(values) if values else 0 + + # Get the first formatter where the scale (sec/min/hour/day etc) is + # greater than the range + fmt = next((fmt for scale, fmt in sorted(self._timescales.items()) + if scale >= rng), '%m-%d') labels = [] - # TODO: Maybe add special tick format for first tick - if rng < self.minute: - fmt = '%H:%M:%S' - - elif rng < self.hour: - fmt = '%H:%M:%S' - elif rng < self.day: - fmt = '%H:%M' - else: - if spacing > self.day: - fmt = '%y:%m%d' - elif spacing >= self.hour: - fmt = '%H' - else: - fmt = '' - - for x in values: + for loc in values: try: - labels.append(pd.to_datetime(x).strftime(fmt)) + labels.append(pd.to_datetime(loc).strftime(fmt)) except ValueError: # Windows can't handle dates before 1970 labels.append('') except OSError: - pass + labels.append('') return labels def tickStrings(self, values, scale, spacing): + """Return the tick strings that should be placed next to ticks. + + This method overrides the base implementation in :class:`AxisItem`, and + will selectively provide date formatted strings if :attr:`timeaxis` is + True. Otherwise the base method is called to provide the tick strings. + + + Parameters + ---------- + values : List + List of values to return strings for + scale : Scalar + Used to specify the scale of the values, useful when the axis label + is configured to show the display as some SI fraction (e.g. milli), + the scaled display value can be properly calculated. + spacing : Scalar + Spacing between values/ticks + + Returns + ------- + List of strings used to label the plot at the given values + + Notes + ----- + This function may be called multiple times for the same plot, + where multiple tick-levels are defined i.e. Major/Minor/Sub-Minor ticks. + The range of the values may also differ between invocations depending on + the positioning of the chart. And the spacing will be different + dependent on how the ticks were placed by the tickSpacing() method. + + """ if self.timeaxis: - return self.dateTickStrings(values, scale, spacing) - else: + return self.dateTickStrings(values, spacing) + else: # pragma: no cover return super().tickStrings(values, scale, spacing) -class DateAxis(AxisItem): +class DateAxis(AxisItem): # pragma: no cover minute = pd.Timedelta(minutes=1).value hour = pd.Timedelta(hours=1).value day = pd.Timedelta(days=2).value diff --git a/dgp/gui/plotting/plotters.py b/dgp/gui/plotting/plotters.py index 8677a2e..66d2416 100644 --- a/dgp/gui/plotting/plotters.py +++ b/dgp/gui/plotting/plotters.py @@ -15,7 +15,7 @@ from dgp.core.oid import OID from dgp.core.types.tuples import LineUpdate from .helpers import LinearFlightRegion -from .backends import PyQtGridPlotWidget +from .backends import PyQtGridPlotWidget, GridPlotWidget import pyqtgraph as pg from pyqtgraph.graphicsItems.LinearRegionItem import LinearRegionItem @@ -35,6 +35,7 @@ class TransformPlot: """Plot interface used for displaying transformation results. May need to display data plotted against time series or scalar series. """ + # TODO: Duplication of params? Use kwargs? def __init__(self, rows=2, cols=1, sharex=True, sharey=False, grid=True, tickformatter=None, parent=None): @@ -53,6 +54,201 @@ def __getattr__(self, item): raise AttributeError("Plot Widget has no Attribute: ", item) +class LineSelectPlot(GridPlotWidget): + """LineSelectPlot V2 based on updated GridPlotWidget""" + segment_changed = pyqtSignal(LineUpdate) + + def __init__(self, rows=1, parent=None): + super().__init__(rows=rows, cols=1, grid=True, sharex=True, + parent=parent) + + self._selecting = False + self._segments = {} + self._updating = False + + # Rate-limit line updates using a timer. + self._line_update = None # type: LinearFlightRegion + self._update_timer = QtCore.QTimer(self) + self._update_timer.setInterval(100) + self._update_timer.timeout.connect(self._update_done) + + self.add_onclick_handler(self.onclick) + + @property + def selection_mode(self): + return self._selecting + + @selection_mode.setter + def selection_mode(self, value): + self._selecting = bool(value) + for group in self._selections.values(): + for lfr in group: # type: LinearFlightRegion + lfr.setMovable(value) + + def add_segment(self, start: float, stop: float, uid: OID = None, + label=None, emit=True): + """ + Add a LinearFlightRegion selection across all linked x-axes + With width ranging from start:stop + + Labelling for the regions is not yet implemented, due to the + difficulty of vertically positioning the text. Solution TBD + """ + + if isinstance(start, pd.Timestamp): + start = start.value + if isinstance(stop, pd.Timestamp): + stop = stop.value + patch_region = [start, stop] + + lfr_group = [] + grpid = uid or OID(tag='segment') + # Note pd.to_datetime(scalar) returns pd.Timestamp + update = LineUpdate('add', grpid, + pd.to_datetime(start), pd.to_datetime(stop), None) + + for i, plot in enumerate(self.plots): + lfr = LinearFlightRegion(parent=self) + lfr.group = grpid + plot.addItem(lfr) + # plot.addItem(lfr.label) + lfr.setRegion(patch_region) + lfr.setMovable(self._selecting) + lfr_group.append(lfr) + lfr.sigRegionChanged.connect(self.update) + + self._segments[grpid] = lfr_group + if emit: + self.segment_changed.emit(update) + + def remove_segment(self, item: LinearFlightRegion): + if not isinstance(item, LinearFlightRegion): + return + + grpid = item.group + x0, x1 = item.getRegion() + update = LineUpdate('remove', grpid, + pd.to_datetime(x0), pd.to_datetime(x1), None) + grp = self._selections[grpid] + for i, plot in enumerate(self.plots): + plot.removeItem(grp[i].label) + plot.removeItem(grp[i]) + del self._selections[grpid] + self.line_changed.emit(update) + + def set_label(self, item: LinearFlightRegion, text: str): + if not isinstance(item, LinearFlightRegion): + return + group = self._selections[item.group] + for lfr in group: # type: LinearFlightRegion + lfr.set_label(text) + + x0, x1 = item.getRegion() + update = LineUpdate('modify', item.group, + pd.to_datetime(x0), pd.to_datetime(x1), text) + self.line_changed.emit(update) + + def onclick(self, ev): + """Onclick handler for mouse left/right click. + + Create a new data-segment if _selection_mode is True on left-click + """ + event = ev[0] + try: + pos = event.pos() # type: pg.Point + except AttributeError: + # Avoid error when clicking around plot, due to an attempt to + # call mapFromScene on None in pyqtgraph/mouseEvents.py + return + if event.button() == QtCore.Qt.RightButton: + return + + if event.button() == QtCore.Qt.LeftButton: + if not self.selection_mode: + return + p0 = self.get_plot(row=0) + if p0.vb is None: + return + event.accept() + # Map click location to data coordinates + xpos = p0.vb.mapToView(pos).x() + # v0, v1 = p0.get_xlim() + v0, v1 = self.get_xlim(0) + vb_span = v1 - v0 + if not self._check_proximity(xpos, vb_span): + return + + start = xpos - (vb_span * 0.05) + stop = xpos + (vb_span * 0.05) + self.add_linked_selection(start, stop) + + def _update(self, item: LinearFlightRegion): + """Update other LinearRegionItems in the group of 'item' to match the + new region. + We must set a flag here as we only want to process updates from the + first source - as this update will be called during the update + process because LinearRegionItem.setRegion() raises a + sigRegionChanged event. + + A timer (_update_timer) is also used to avoid firing a line update + with ever pixel adjustment. _update_done will be called after an elapsed + time (100ms default) where there have been no calls to update(). + """ + if self._updating: + return + + self._update_timer.start() + self._updating = True + self._line_update = item + new_region = item.getRegion() + group = self._segments[item.group] + for lri in group: # type: LinearFlightRegion + if lri is item: + continue + else: + lri.setRegion(new_region) + self._updating = False + + def _update_done(self): + self._update_timer.stop() + x0, x1 = self._line_update.getRegion() + update = LineUpdate('modify', self._line_update.group, + pd.to_datetime(x0), pd.to_datetime(x1), None) + self.segment_changed.emit(update) + self._line_update = None + + def _check_proximity(self, x, span, proximity=0.03) -> bool: + """ + Check the proximity of a mouse click at location 'x' in relation to + any already existing LinearRegions. + + Parameters + ---------- + x : float + Mouse click position in data coordinate + span : float + X-axis span of the view box + proximity : float + Proximity as a percentage of the view box span + + Returns + ------- + True if x is not in proximity to any existing LinearRegionItems + False if x is within or in proximity to an existing LinearRegionItem + + """ + prox = span * proximity + for group in self._selections.values(): + if not len(group): + continue + lri0 = group[0] # type: LinearRegionItem + lx0, lx1 = lri0.getRegion() + if lx0 - prox <= x <= lx1 + prox: + print("New point is too close") + return False + return True + + class PqtLineSelectPlot(QtCore.QObject): """New prototype Flight Line selection plot using Pyqtgraph as the backend. diff --git a/tests/test_plots.py b/tests/test_plots.py index 0337691..e20a623 100644 --- a/tests/test_plots.py +++ b/tests/test_plots.py @@ -4,11 +4,13 @@ Test/Develop Plots using PyQtGraph for high-performance user-interactive plots within the application. """ +from datetime import datetime + import pytest import numpy as np import pandas as pd from PyQt5.QtCore import QObject -from PyQt5.QtWidgets import QWidget, QGraphicsScene +from PyQt5.QtWidgets import QWidget, QGraphicsScene, QGraphicsWidget, QGraphicsTextItem from pyqtgraph import GraphicsLayout, PlotItem, PlotDataItem, LegendItem from dgp.gui.plotting.backends import GridPlotWidget @@ -40,6 +42,17 @@ def test_grid_plot_widget_init(): assert isinstance(p0.legend, LegendItem) +def test_grid_plot_widget_make_index(gravdata): + assert ('gravity', 0, 1) == GridPlotWidget.make_index(gravdata['gravity'].name, 0, 1) + + unnamed_ser = pd.Series(np.zeros(14), name='') + with pytest.raises(ValueError): + GridPlotWidget.make_index(unnamed_ser.name, 1, 1) + + upper_ser = pd.Series(np.zeros(14), name='GraVitY') + assert ('gravity', 2, 0) == GridPlotWidget.make_index(upper_ser.name, 2, 0) + + def test_grid_plot_widget_plotting(gravity): gpw = GridPlotWidget(rows=2) p0: PlotItem = gpw.get_plot(row=0) @@ -78,8 +91,11 @@ def test_grid_plot_widget_plotting(gravity): assert gpw._items.get(key, None) is None assert 'gravity' not in [label.text for _, label in p0.legend.items] + with pytest.raises(KeyError): + gpw.remove_series('eotvos', 0, 0) -def test_grid_plot_widget_remove_by_item(gravity): + +def test_grid_plot_widget_remove_plotitem(gravity): gpw = GridPlotWidget(rows=2) p0 = gpw.get_plot(0) p1 = gpw.get_plot(1) @@ -120,7 +136,7 @@ def test_grid_plot_widget_find_series(gravity): assert gravity.equals(_grav_series0) -def test_grid_plot_widget_axis_formatting(gravity): +def test_grid_plot_widget_set_xaxis_formatter(gravity): """Test that appropriate axis formatters are automatically added based on the series index type (numeric or DateTime) """ @@ -138,6 +154,9 @@ def test_grid_plot_widget_axis_formatting(gravity): assert isinstance(btm_axis_p1, PolyAxis) assert not btm_axis_p1.timeaxis + gpw.set_xaxis_formatter(formatter='scalar', row=0) + assert not p0.getAxis('bottom').timeaxis + def test_grid_plot_widget_sharex(gravity): """Test linked vs unlinked x-axis scales""" @@ -193,6 +212,45 @@ def test_grid_plot_clear(gravdata): # TODO: Selective clear not yet implemented +def test_PolyAxis_tickStrings(): + axis = PolyAxis(orientation='bottom') + axis.timeaxis = True + _scale = 1.0 + _spacing = pd.Timedelta(seconds=1).value + + _HOUR_SEC = 3600 + _DAY_SEC = 86400 + + dt_index = pd.DatetimeIndex(start=datetime(2018, 6, 15, 12, 0, 0), freq='s', + periods=8*_DAY_SEC) + dt_list = pd.to_numeric(dt_index).tolist() + + # Test with no values passed + assert [] == axis.tickStrings([], _scale, 1) + + # If the plot range is <= 60 seconds, ticks should be formatted as %M:%S + _minute = 61 + expected = [pd.to_datetime(dt_list[i]).strftime('%M:%S') for i in range(_minute)] + print(f'last expected: {expected[-1]}') + assert expected == axis.tickStrings(dt_list[:_minute], _scale, _spacing) + + # If 1 minute < plot range <= 1 hour, ticks should be formatted as %H:%M + _hour = 60*60 + 1 + expected = [pd.to_datetime(dt_list[i]).strftime('%H:%M') for i in range(0, _hour, 5)] + assert expected == axis.tickStrings(dt_list[:_hour:5], _scale, _spacing) + + # If 1 hour < plot range <= 1 day, ticks should be formatted as %d %H:%M + tick_values = [dt_list[i] for i in range(0, 23*_HOUR_SEC, _HOUR_SEC)] + expected = [pd.to_datetime(v).strftime('%d %H:%M') for v in tick_values] + assert expected == axis.tickStrings(tick_values, _scale, _HOUR_SEC) + + # If 1 day < plot range <= 1 week, ticks should be formatted as %m-%d %H + + tick_values = [dt_list[i] for i in range(0, 3*_DAY_SEC, _DAY_SEC)] + expected = [pd.to_datetime(v).strftime('%m-%d %H') for v in tick_values] + assert expected == axis.tickStrings(tick_values, _scale, _DAY_SEC) + + @pytest.mark.skip("Defer implementation of this") def test_grid_plot_multi_y(gravdata): _gravity = gravdata['gravity'] From fc08f41d5053ad2a7bd12240bd42aa6c2b162d92 Mon Sep 17 00:00:00 2001 From: Zachery Brady Date: Sat, 21 Jul 2018 13:23:17 -0600 Subject: [PATCH 183/236] ENH: Add second y-axis scale to plots. Add ability to enable secondary (right) y-axis scale to a plot within a GridPlotWidget. This enables plotting of two different Series with differing magnitudes on the same plot. Added/updated plot tests. Update LinearFlightRegion context menu actions to work with new LineSelectPlot API. --- dgp/gui/plotting/backends.py | 90 +++++++++++++++++----- dgp/gui/plotting/helpers.py | 12 ++- dgp/gui/plotting/plotters.py | 38 +++++---- tests/test_plots.py | 144 +++++++++++++++++++++++++++++++---- 4 files changed, 229 insertions(+), 55 deletions(-) diff --git a/dgp/gui/plotting/backends.py b/dgp/gui/plotting/backends.py index 176002a..7970bbe 100644 --- a/dgp/gui/plotting/backends.py +++ b/dgp/gui/plotting/backends.py @@ -17,6 +17,31 @@ '#8c564b', '#e377c2', '#7f7f7f', '#bcbd22', '#17becf'] +class LinkedPlotItem(PlotItem): + """LinkedPlotItem simplifies the creation of a second plot axes linked to + the right axis scale of the base :class:`PlotItem` + + This class is used by GridPlotWidget to construct plots which have a second + y-scale in order to display two (or potentially more) Series on the same + plot with different amplitudes. + + """ + def __init__(self, base: PlotItem): + super().__init__(enableMenu=False) + self._base = base + self.legend = base.legend + self.setXLink(self._base) + self.buttonsHidden = True + self.hideAxis('left') + self.hideAxis('bottom') + self.setZValue(-100) + + base.showAxis('right') + base.getAxis('right').setGrid(False) + base.getAxis('right').linkToView(self.getViewBox()) + base.layout.addItem(self, 2, 1) + + class GridPlotWidget(GraphicsView): """ Base plotting class used to create a group of 1 or more :class:`PlotItem` @@ -31,9 +56,9 @@ class aims to simplify the API for our use cases, and add functionality for Parameters ---------- - rows : int, optional + rows : int, Optional Rows of plots to generate (stacked from top to bottom), default is 1 - background : optional + background : Optional Background color for the widget and nested plots. Can be any value accepted by :func:`mkBrush` or :func:`mkColor` e.g. QColor, hex string, RGB(A) tuple @@ -43,14 +68,14 @@ class aims to simplify the API for our use cases, and add functionality for If True links all x-axis values to the first plot multiy : bool If True all plots will have a sister plot with its own y-axis and scale - enabling the plotting of 2 (or more) datasets with differing scales on a + enabling the plotting of 2 (or more) Series with differing scales on a single plot surface. parent See Also -------- - :func:`mkPen` for customizing plot-line pens (creates a QgGui.QPen) - :func:`mkColor` for color options in the plot (creates a QtGui.QColor) + :func:`pyqtgraph.functions.mkPen` for customizing plot-line pens (creates a QgGui.QPen) + :func:`pyqtgraph.functions.mkColor` for color options in the plot (creates a QtGui.QColor) """ @@ -61,27 +86,36 @@ def __init__(self, rows=1, cols=1, background='w', grid=True, sharex=False, self.setCentralItem(self.gl) self.rows = rows - self.cols = 1 + self.cols = cols self._pens = cycle([{'color': v, 'width': 2} for v in LINE_COLORS]) self._series = {} # type: Dict[pd.Series: Tuple[str, int, int]] self._items = {} # type: Dict[PlotDataItem: Tuple[str, int, int]] + self._rightaxis = {} + col = 0 for row in range(self.rows): axis_items = {'bottom': PolyAxis(orientation='bottom')} - plot: PlotItem = self.gl.addPlot(row=row, col=0, + plot: PlotItem = self.gl.addPlot(row=row, col=col, backround=background, axisItems=axis_items) plot.clear() plot.addLegend(offset=(15, 15)) plot.showGrid(x=grid, y=grid) + plot.setYRange(-1, 1) # Prevents overflow when labels are added if row > 0 and sharex: plot.setXLink(self.get_plot(0, 0)) + if multiy: + p2 = LinkedPlotItem(plot) + self._rightaxis[(row, col)] = p2 self.__signal_proxies = [] - def get_plot(self, row: int, col: int = 0) -> PlotItem: - return self.gl.getItem(row, col) + def get_plot(self, row: int, col: int = 0, axis: str = 'left') -> PlotItem: + if axis == 'right': + return self._rightaxis[(row, col)] + else: + return self.gl.getItem(row, col) @property def plots(self) -> Generator[PlotItem, None, None]: @@ -90,11 +124,12 @@ def plots(self) -> Generator[PlotItem, None, None]: def add_series(self, series: pd.Series, row: int, col: int = 0, axis: str = 'left'): - """Add a pandas :class:`Series` to the plot at the specified row/column + """Add a pandas :class:`pandas.Series` to the plot at the specified + row/column Parameters ---------- - series : :class:`Series` + series : :class:`~pandas.Series` The Pandas Series to add; series.index and series.values are taken to be the x and y axis respectively row : int @@ -107,28 +142,28 @@ def add_series(self, series: pd.Series, row: int, col: int = 0, ------- """ - key = self.make_index(series.name, row, col) + key = self.make_index(series.name, row, col, axis) if self.get_series(*key) is not None: return self._series[key] = series - plot = self.get_plot(row, col) + if axis == 'right': + plot = self._rightaxis.get((row, col), self.get_plot(row, col)) + else: + plot = self.get_plot(row, col) xvals = pd.to_numeric(series.index, errors='coerce') yvals = pd.to_numeric(series.values, errors='coerce') item = plot.plot(x=xvals, y=yvals, name=series.name, pen=next(self._pens)) self._items[key] = item return item - def get_series(self, name: str, row, col=0) -> Union[pd.Series, None]: - return self._series.get((name, row, col), None) + def get_series(self, name: str, row, col=0, axis='left') -> Union[pd.Series, None]: + return self._series.get((name, row, col, axis), None) def remove_series(self, name: str, row: int, col: int = 0) -> None: plot = self.get_plot(row, col) key = self.make_index(name, row, col) - item = self._items.get(key, None) - if item is None: - raise KeyError(f'Item {key} does not exist.') - plot.removeItem(item) + plot.removeItem(self._items[key]) plot.legend.removeItem(name) del self._series[key] del self._items[key] @@ -199,6 +234,17 @@ def get_xlim(self, row: int, col: int = 0): return self.get_plot(row, col).vb.viewRange()[0] def set_xlink(self, linked: bool = True, autorange: bool = False): + """Enable or disable linking of x-axis' between all plots in the grid. + + Parameters + ---------- + linked : bool, Optional + If True sets all plots to link x-axis scales with plot 0, 0 + If False, un-links all plot x-axis' + autorange : bool, Optional + If True automatically re-scale the view box after linking/unlinking + + """ base = self.get_plot(0, 0) if linked else None for i in range(1, self.rows): plot = self.get_plot(i, 0) @@ -224,10 +270,12 @@ def add_onclick_handler(self, slot, ratelimit: int = 60): # pragma: no cover return sp @staticmethod - def make_index(name: str, row: int, col: int = 0): + def make_index(name: str, row: int, col: int = 0, axis: str = 'left'): + if axis not in ('left', 'right'): + axis = 'left' if name is None or name is '': raise ValueError("Cannot create plot index from empty name.") - return name.lower(), row, col + return name.lower(), row, col, axis class PyQtGridPlotWidget(GraphicsView): # pragma: no cover diff --git a/dgp/gui/plotting/helpers.py b/dgp/gui/plotting/helpers.py index bbff371..57db72f 100644 --- a/dgp/gui/plotting/helpers.py +++ b/dgp/gui/plotting/helpers.py @@ -4,6 +4,7 @@ from PyQt5.QtCore import Qt, QPoint from PyQt5.QtWidgets import QAction, QInputDialog, QMenu from pyqtgraph import LinearRegionItem, TextItem, AxisItem +from pyqtgraph.GraphicsScene.mouseEvents import MouseClickEvent class PolyAxis(AxisItem): @@ -64,7 +65,8 @@ def tickStrings(self, values, scale, spacing): Returns ------- - List of strings used to label the plot at the given values + List[str] + List of strings used to label the plot at the given values Notes ----- @@ -81,6 +83,7 @@ def tickStrings(self, values, scale, spacing): return super().tickStrings(values, scale, spacing) +# TODO: Deprecated class DateAxis(AxisItem): # pragma: no cover minute = pd.Timedelta(minutes=1).value hour = pd.Timedelta(hours=1).value @@ -190,7 +193,7 @@ def __init__(self, values=(0, 1), orientation=None, brush=None, self._label_text = label or '' self.label = TextItem(text=self._label_text, color=(0, 0, 0), anchor=(0, 0)) - # self.label.setPos() + self._move_label(self) self._menu = QMenu() self._menu.addAction(QAction('Remove', self, triggered=self._remove)) self._menu.addAction(QAction('Set Label', self, @@ -205,8 +208,9 @@ def group(self): def group(self, value): self._grpid = value - def mouseClickEvent(self, ev): + def mouseClickEvent(self, ev: MouseClickEvent): if not self.parent.selection_mode: + print("parent in wrong mode") return if ev.button() == Qt.RightButton and not self.moving: ev.accept() @@ -224,7 +228,7 @@ def _move_label(self, lfr): def _remove(self): try: - self.parent.remove(self) + self.parent.remove_segment(self) except AttributeError: return diff --git a/dgp/gui/plotting/plotters.py b/dgp/gui/plotting/plotters.py index 66d2416..ce6b6dd 100644 --- a/dgp/gui/plotting/plotters.py +++ b/dgp/gui/plotting/plotters.py @@ -31,7 +31,7 @@ """ -class TransformPlot: +class TransformPlot: # pragma: no cover """Plot interface used for displaying transformation results. May need to display data plotted against time series or scalar series. """ @@ -60,7 +60,7 @@ class LineSelectPlot(GridPlotWidget): def __init__(self, rows=1, parent=None): super().__init__(rows=rows, cols=1, grid=True, sharex=True, - parent=parent) + multiy=True, parent=parent) self._selecting = False self._segments = {} @@ -81,7 +81,7 @@ def selection_mode(self): @selection_mode.setter def selection_mode(self, value): self._selecting = bool(value) - for group in self._selections.values(): + for group in self._segments.values(): for lfr in group: # type: LinearFlightRegion lfr.setMovable(value) @@ -101,21 +101,22 @@ def add_segment(self, start: float, stop: float, uid: OID = None, stop = stop.value patch_region = [start, stop] - lfr_group = [] grpid = uid or OID(tag='segment') # Note pd.to_datetime(scalar) returns pd.Timestamp update = LineUpdate('add', grpid, - pd.to_datetime(start), pd.to_datetime(stop), None) + pd.to_datetime(start), pd.to_datetime(stop), label) + lfr_group = [] for i, plot in enumerate(self.plots): - lfr = LinearFlightRegion(parent=self) + lfr = LinearFlightRegion(parent=self, label=label) lfr.group = grpid plot.addItem(lfr) - # plot.addItem(lfr.label) + plot.addItem(lfr.label) lfr.setRegion(patch_region) lfr.setMovable(self._selecting) + lfr.sigRegionChanged.connect(self._update) + lfr_group.append(lfr) - lfr.sigRegionChanged.connect(self.update) self._segments[grpid] = lfr_group if emit: @@ -123,18 +124,19 @@ def add_segment(self, start: float, stop: float, uid: OID = None, def remove_segment(self, item: LinearFlightRegion): if not isinstance(item, LinearFlightRegion): - return + raise TypeError(f'{item!r} is not a valid type. Expected ' + f'LinearFlightRegion') grpid = item.group x0, x1 = item.getRegion() update = LineUpdate('remove', grpid, pd.to_datetime(x0), pd.to_datetime(x1), None) - grp = self._selections[grpid] + grp = self._segments[grpid] for i, plot in enumerate(self.plots): plot.removeItem(grp[i].label) plot.removeItem(grp[i]) - del self._selections[grpid] - self.line_changed.emit(update) + del self._segments[grpid] + self.segment_changed.emit(update) def set_label(self, item: LinearFlightRegion, text: str): if not isinstance(item, LinearFlightRegion): @@ -148,7 +150,7 @@ def set_label(self, item: LinearFlightRegion, text: str): pd.to_datetime(x0), pd.to_datetime(x1), text) self.line_changed.emit(update) - def onclick(self, ev): + def onclick(self, ev): # pragma: no cover """Onclick handler for mouse left/right click. Create a new data-segment if _selection_mode is True on left-click @@ -156,6 +158,7 @@ def onclick(self, ev): event = ev[0] try: pos = event.pos() # type: pg.Point + print(f'event pos: {pos} pos type: {type(pos)}') except AttributeError: # Avoid error when clicking around plot, due to an attempt to # call mapFromScene on None in pyqtgraph/mouseEvents.py @@ -167,11 +170,13 @@ def onclick(self, ev): if not self.selection_mode: return p0 = self.get_plot(row=0) + print(f'p0 type: {type(p0)}') if p0.vb is None: return event.accept() # Map click location to data coordinates xpos = p0.vb.mapToView(pos).x() + print(f'xpos: {xpos}') # v0, v1 = p0.get_xlim() v0, v1 = self.get_xlim(0) vb_span = v1 - v0 @@ -180,7 +185,7 @@ def onclick(self, ev): start = xpos - (vb_span * 0.05) stop = xpos + (vb_span * 0.05) - self.add_linked_selection(start, stop) + self.add_segment(start, stop) def _update(self, item: LinearFlightRegion): """Update other LinearRegionItems in the group of 'item' to match the @@ -238,7 +243,7 @@ def _check_proximity(self, x, span, proximity=0.03) -> bool: """ prox = span * proximity - for group in self._selections.values(): + for group in self._segments.values(): if not len(group): continue lri0 = group[0] # type: LinearRegionItem @@ -249,7 +254,8 @@ def _check_proximity(self, x, span, proximity=0.03) -> bool: return True -class PqtLineSelectPlot(QtCore.QObject): +# TODO: Delete after full implementation/testing of LineSelectPlot +class PqtLineSelectPlot(QtCore.QObject): # pragma: no cover """New prototype Flight Line selection plot using Pyqtgraph as the backend. diff --git a/tests/test_plots.py b/tests/test_plots.py index e20a623..23b1692 100644 --- a/tests/test_plots.py +++ b/tests/test_plots.py @@ -9,13 +9,18 @@ import pytest import numpy as np import pandas as pd -from PyQt5.QtCore import QObject -from PyQt5.QtWidgets import QWidget, QGraphicsScene, QGraphicsWidget, QGraphicsTextItem -from pyqtgraph import GraphicsLayout, PlotItem, PlotDataItem, LegendItem - +from PyQt5.QtCore import QObject, QEvent, QPointF, Qt +from PyQt5.QtGui import QMouseEvent +from PyQt5.QtTest import QSignalSpy +from PyQt5.QtWidgets import QWidget, QGraphicsScene, QGraphicsSceneMouseEvent +from pyqtgraph import GraphicsLayout, PlotItem, PlotDataItem, LegendItem, Point +from pyqtgraph.GraphicsScene.mouseEvents import MouseClickEvent + +from dgp.core.oid import OID +from dgp.core.types.tuples import LineUpdate from dgp.gui.plotting.backends import GridPlotWidget from dgp.gui.plotting.plotters import LineSelectPlot -from dgp.gui.plotting.helpers import PolyAxis +from dgp.gui.plotting.helpers import PolyAxis, LinearFlightRegion from .context import APP @@ -43,14 +48,16 @@ def test_grid_plot_widget_init(): def test_grid_plot_widget_make_index(gravdata): - assert ('gravity', 0, 1) == GridPlotWidget.make_index(gravdata['gravity'].name, 0, 1) + assert ('gravity', 0, 1, 'left') == GridPlotWidget.make_index(gravdata['gravity'].name, 0, 1) unnamed_ser = pd.Series(np.zeros(14), name='') with pytest.raises(ValueError): GridPlotWidget.make_index(unnamed_ser.name, 1, 1) upper_ser = pd.Series(np.zeros(14), name='GraVitY') - assert ('gravity', 2, 0) == GridPlotWidget.make_index(upper_ser.name, 2, 0) + assert ('gravity', 2, 0, 'left') == GridPlotWidget.make_index(upper_ser.name, 2, 0) + + assert ('long_acc', 3, 1, 'left') == GridPlotWidget.make_index('long_acc', 3, 1, 'sideways') def test_grid_plot_widget_plotting(gravity): @@ -128,7 +135,7 @@ def test_grid_plot_widget_find_series(gravity): gpw.add_series(gravity, 0) gpw.add_series(gravity, 2) - expected = [(gravity.name, 0, 0), (gravity.name, 2, 0)] + expected = [(gravity.name, 0, 0, 'left'), (gravity.name, 2, 0, 'left')] result = gpw.find_series(gravity.name) assert expected == result @@ -251,23 +258,27 @@ def test_PolyAxis_tickStrings(): assert expected == axis.tickStrings(tick_values, _scale, _DAY_SEC) -@pytest.mark.skip("Defer implementation of this") def test_grid_plot_multi_y(gravdata): _gravity = gravdata['gravity'] _longacc = gravdata['long_accel'] gpw = GridPlotWidget(rows=1, multiy=True) + p0 = gpw.get_plot(0) gpw.add_series(_gravity, 0) gpw.add_series(_longacc, 0, axis='right') - p0 = gpw.get_plot(0) - scene: QGraphicsScene = p0.scene() - print(scene.items()) + + # Legend entry for right axis should appear on p0 legend + assert _gravity.name in [label.text for _, label in p0.legend.items] + assert _longacc.name in [label.text for _, label in p0.legend.items] assert 1 == len(gpw.get_plot(0).dataItems) + assert 1 == len(gpw.get_plot(0, axis='right').dataItems) + assert gpw.get_xlim(0) == gpw.get_plot(0, axis='right').vb.viewRange()[0] -@pytest.mark.skip("Not implemented yet") -def test_line_select_plot_init(): + + +def test_LineSelectPlot_init(): plot = LineSelectPlot(rows=2) assert isinstance(plot, QObject) @@ -275,3 +286,108 @@ def test_line_select_plot_init(): assert 2 == plot.rows + +def test_LineSelectPlot_selection_mode(): + plot = LineSelectPlot(rows=3) + assert not plot.selection_mode + plot.selection_mode = True + assert plot.selection_mode + + plot.add_segment(datetime.now().timestamp(), + datetime.now().timestamp() + 1000) + + assert 1 == len(plot._segments) + + for lfr_grp in plot._segments.values(): + for lfr in lfr_grp: # type: LinearFlightRegion + assert lfr.movable + + plot.selection_mode = False + for lfr_grp in plot._segments.values(): + for lfr in lfr_grp: + assert not lfr.movable + + +def test_LineSelectPlot_add_segment(): + _rows = 2 + plot = LineSelectPlot(rows=_rows) + update_spy = QSignalSpy(plot.segment_changed) + + ts_oid = OID(tag='datetime_timestamp') + ts_start = datetime.now().timestamp() - 1000 + ts_stop = ts_start + 200 + + pd_oid = OID(tag='pandas_timestamp') + pd_start = pd.Timestamp.now() + pd_stop = pd_start + pd.Timedelta(seconds=1000) + + assert 0 == len(plot._segments) + + plot.add_segment(ts_start, ts_stop, ts_oid) + assert 1 == len(update_spy) + assert 1 == len(plot._segments) + lfr_grp = plot._segments[ts_oid] + assert _rows == len(lfr_grp) + + # Test adding segment using pandas.Timestamp values + plot.add_segment(pd_start, pd_stop, pd_oid) + assert 2 == len(update_spy) + assert 2 == len(plot._segments) + lfr_grp = plot._segments[pd_oid] + assert _rows == len(lfr_grp) + + +def test_LineSelectPlot_remove_segment(): + _rows = 2 + plot = LineSelectPlot(rows=_rows) + update_spy = QSignalSpy(plot.segment_changed) + + lfr_oid = OID(tag='segment selection') + lfr_start = datetime.now().timestamp() + lfr_end = lfr_start + 300 + + plot.add_segment(lfr_start, lfr_end, lfr_oid) + assert 1 == len(update_spy) + assert isinstance(update_spy[0][0], LineUpdate) + + assert 1 == len(plot._segments) + segments = plot._segments[lfr_oid] + assert segments[0] in plot.get_plot(row=0).items + assert segments[1] in plot.get_plot(row=1).items + + assert lfr_oid == segments[0].group + assert lfr_oid == segments[1].group + + with pytest.raises(TypeError): + plot.remove_segment("notavalidtype") + + plot.remove_segment(segments[0]) + assert 0 == len(plot._segments) + + +def test_LineSelectPlot_check_proximity(gravdata): + _rows = 2 + plot = LineSelectPlot(rows=_rows) + print(f'plot geom: {plot.geometry()}') + print(f'scene rect: {plot.sceneRect()}') + p0 = plot.get_plot(0) + plot.add_series(gravdata['gravity'], 0) + + lfr_start = gravdata.index[0] + lfr_end = gravdata.index[2] + p0xlim = plot.get_xlim(0) + span = p0xlim[1] - p0xlim[0] + + xpos = gravdata.index[3].value + assert plot._check_proximity(xpos, span) + + plot.add_segment(lfr_start, lfr_end) + + assert not plot._check_proximity(xpos, span, proximity=0.2) + xpos = gravdata.index[4].value + assert plot._check_proximity(xpos, span, proximity=0.2) + + + + + From 90ef6aba613c91c4134aea3015753d87a62782a0 Mon Sep 17 00:00:00 2001 From: Zachery Brady Date: Mon, 23 Jul 2018 11:38:14 -0600 Subject: [PATCH 184/236] Re-implement LineSelectPlot API on new backend. Add tests/API functionality for new LineSelectPlot based on new GridPlotWidget. Add APP import in pytest conftest.py to remove the need to manually import the Qt APP object for tests requiring Qt support. DOC: Add gui/plotting documentation pages to sphinx build. --- dgp/gui/plotting/backends.py | 39 +++++++--- dgp/gui/plotting/plotters.py | 88 ++++++++++++++-------- docs/source/conf.py | 3 +- docs/source/gui/index.rst | 3 + docs/source/gui/plotting.rst | 64 ++++++++++++++++ tests/test_plots.py | 141 ++++++++++++++++++++++++----------- 6 files changed, 251 insertions(+), 87 deletions(-) create mode 100644 docs/source/gui/plotting.rst diff --git a/dgp/gui/plotting/backends.py b/dgp/gui/plotting/backends.py index 7970bbe..24a6dae 100644 --- a/dgp/gui/plotting/backends.py +++ b/dgp/gui/plotting/backends.py @@ -1,12 +1,12 @@ # -*- coding: utf-8 -*- - +from datetime import datetime from itertools import cycle from typing import List, Union, Tuple, Generator, Dict import pandas as pd from pyqtgraph.widgets.GraphicsView import GraphicsView from pyqtgraph.graphicsItems.GraphicsLayout import GraphicsLayout -from pyqtgraph.widgets.PlotWidget import PlotItem +from pyqtgraph.graphicsItems.PlotItem import PlotItem from pyqtgraph import SignalProxy, PlotDataItem, ViewBox from .helpers import DateAxis, PolyAxis @@ -80,7 +80,7 @@ class aims to simplify the API for our use cases, and add functionality for """ def __init__(self, rows=1, cols=1, background='w', grid=True, sharex=False, - multiy=False, parent=None): + multiy=False, timeaxis=False, parent=None): super().__init__(background=background, parent=parent) self.gl = GraphicsLayout(parent=parent) self.setCentralItem(self.gl) @@ -88,14 +88,17 @@ def __init__(self, rows=1, cols=1, background='w', grid=True, sharex=False, self.rows = rows self.cols = cols - self._pens = cycle([{'color': v, 'width': 2} for v in LINE_COLORS]) + # Note: increasing pen width can drastically reduce performance + self._pens = cycle([{'color': v, 'width': 1} for v in LINE_COLORS]) self._series = {} # type: Dict[pd.Series: Tuple[str, int, int]] self._items = {} # type: Dict[PlotDataItem: Tuple[str, int, int]] self._rightaxis = {} + # TODO: use plot.setLimits to restrict zoom-out level (prevent OverflowError) col = 0 for row in range(self.rows): - axis_items = {'bottom': PolyAxis(orientation='bottom')} + axis_items = {'bottom': PolyAxis(orientation='bottom', + timeaxis=timeaxis)} plot: PlotItem = self.gl.addPlot(row=row, col=col, backround=background, axisItems=axis_items) @@ -112,7 +115,7 @@ def __init__(self, rows=1, cols=1, background='w', grid=True, sharex=False, self.__signal_proxies = [] def get_plot(self, row: int, col: int = 0, axis: str = 'left') -> PlotItem: - if axis == 'right': + if axis.lower() == 'right': return self._rightaxis[(row, col)] else: return self.gl.getItem(row, col) @@ -160,15 +163,17 @@ def add_series(self, series: pd.Series, row: int, col: int = 0, def get_series(self, name: str, row, col=0, axis='left') -> Union[pd.Series, None]: return self._series.get((name, row, col, axis), None) - def remove_series(self, name: str, row: int, col: int = 0) -> None: - plot = self.get_plot(row, col) - key = self.make_index(name, row, col) + def remove_series(self, name: str, row: int, col: int = 0, + axis: str = 'left') -> None: + plot = self.get_plot(row, col, axis) + key = self.make_index(name, row, col, axis) plot.removeItem(self._items[key]) plot.legend.removeItem(name) del self._series[key] del self._items[key] def clear(self): + # TODO: This won't clear right-axis plots yet for i in range(self.rows): for j in range(self.cols): plot = self.get_plot(i, j) @@ -197,7 +202,21 @@ def remove_plotitem(self, item: PlotDataItem) -> None: del self._series[self.make_index(name, *index[0])] - def find_series(self, name: str) -> List[Tuple[str, int, int]]: + def find_series(self, name: str) -> List[Tuple[str, int, int, str]]: + """Find and return a list of all indexes where a series with + Series.name == name + + Parameters + ---------- + name : str + Name of the :class:`pandas.Series` to find indexes of + + Returns + ------- + List + List of Series indexes, see :func:`make_index` + + """ indexes = [] for index, series in self._series.items(): if series.name == name: # pragma: no branch diff --git a/dgp/gui/plotting/plotters.py b/dgp/gui/plotting/plotters.py index ce6b6dd..7a28468 100644 --- a/dgp/gui/plotting/plotters.py +++ b/dgp/gui/plotting/plotters.py @@ -55,12 +55,14 @@ def __getattr__(self, item): class LineSelectPlot(GridPlotWidget): - """LineSelectPlot V2 based on updated GridPlotWidget""" - segment_changed = pyqtSignal(LineUpdate) + """LineSelectPlot + + """ + sigSegmentChanged = pyqtSignal(LineUpdate) def __init__(self, rows=1, parent=None): super().__init__(rows=rows, cols=1, grid=True, sharex=True, - multiy=True, parent=parent) + multiy=False, timeaxis=True, parent=parent) self._selecting = False self._segments = {} @@ -85,14 +87,29 @@ def selection_mode(self, value): for lfr in group: # type: LinearFlightRegion lfr.setMovable(value) - def add_segment(self, start: float, stop: float, uid: OID = None, - label=None, emit=True): + def add_segment(self, start: float, stop: float, label: str = None, + uid: OID = None, emit=True) -> None: """ Add a LinearFlightRegion selection across all linked x-axes - With width ranging from start:stop + With width ranging from start:stop and an optional label. + + To non-interactively add a segment group (e.g. when loading a saved + project) this method should be called with the uid parameter, and emit + set to False. + + Parameters + ---------- + start : float + stop : float + label : str, Optional + Optional text label to display within the segment on the plot + uid : :class:`OID`, Optional + Specify the uid of the segment group, used for re-creating segments + when loading a plot + emit : bool, Optional + If False, sigSegmentChanged will not be emitted on addition of the + segment - Labelling for the regions is not yet implemented, due to the - difficulty of vertically positioning the text. Solution TBD """ if isinstance(start, pd.Timestamp): @@ -114,13 +131,17 @@ def add_segment(self, start: float, stop: float, uid: OID = None, plot.addItem(lfr.label) lfr.setRegion(patch_region) lfr.setMovable(self._selecting) - lfr.sigRegionChanged.connect(self._update) + lfr.sigRegionChanged.connect(self._update_segments) + plot.sigYRangeChanged.connect(lfr.y_changed) lfr_group.append(lfr) self._segments[grpid] = lfr_group if emit: - self.segment_changed.emit(update) + self.sigSegmentChanged.emit(update) + + def get_segment(self, uid: OID): + return self._segments[uid][0] def remove_segment(self, item: LinearFlightRegion): if not isinstance(item, LinearFlightRegion): @@ -133,22 +154,27 @@ def remove_segment(self, item: LinearFlightRegion): pd.to_datetime(x0), pd.to_datetime(x1), None) grp = self._segments[grpid] for i, plot in enumerate(self.plots): - plot.removeItem(grp[i].label) - plot.removeItem(grp[i]) + lfr: LinearFlightRegion = grp[i] + try: + plot.sigYRangeChanged.disconnect(lfr.y_changed) + except TypeError: + pass + plot.removeItem(lfr.label) + plot.removeItem(lfr) del self._segments[grpid] - self.segment_changed.emit(update) + self.sigSegmentChanged.emit(update) def set_label(self, item: LinearFlightRegion, text: str): if not isinstance(item, LinearFlightRegion): - return - group = self._selections[item.group] + raise TypeError(f'Item must be of type LinearFlightRegion') + group = self._segments[item.group] for lfr in group: # type: LinearFlightRegion lfr.set_label(text) x0, x1 = item.getRegion() update = LineUpdate('modify', item.group, pd.to_datetime(x0), pd.to_datetime(x1), text) - self.line_changed.emit(update) + self.sigSegmentChanged.emit(update) def onclick(self, ev): # pragma: no cover """Onclick handler for mouse left/right click. @@ -176,7 +202,6 @@ def onclick(self, ev): # pragma: no cover event.accept() # Map click location to data coordinates xpos = p0.vb.mapToView(pos).x() - print(f'xpos: {xpos}') # v0, v1 = p0.get_xlim() v0, v1 = self.get_xlim(0) vb_span = v1 - v0 @@ -187,17 +212,19 @@ def onclick(self, ev): # pragma: no cover stop = xpos + (vb_span * 0.05) self.add_segment(start, stop) - def _update(self, item: LinearFlightRegion): + def _update_segments(self, item: LinearFlightRegion): """Update other LinearRegionItems in the group of 'item' to match the new region. - We must set a flag here as we only want to process updates from the - first source - as this update will be called during the update - process because LinearRegionItem.setRegion() raises a - sigRegionChanged event. + A flag (_updating) is set here as we only want to process updates from + the first item - as this function will be called during the update + process by each item in the group when LinearRegionItem.setRegion() + emits a sigRegionChanged event. + + A timer (_update_timer) is also used to avoid emitting a + :class:`LineUpdate` with every pixel adjustment. + _update_done will be called after the QTimer times-out (100ms default) + in order to emit the intermediate or final update. - A timer (_update_timer) is also used to avoid firing a line update - with ever pixel adjustment. _update_done will be called after an elapsed - time (100ms default) where there have been no calls to update(). """ if self._updating: return @@ -207,11 +234,8 @@ def _update(self, item: LinearFlightRegion): self._line_update = item new_region = item.getRegion() group = self._segments[item.group] - for lri in group: # type: LinearFlightRegion - if lri is item: - continue - else: - lri.setRegion(new_region) + for lri in [i for i in group if i is not item]: + lri.setRegion(new_region) self._updating = False def _update_done(self): @@ -219,7 +243,7 @@ def _update_done(self): x0, x1 = self._line_update.getRegion() update = LineUpdate('modify', self._line_update.group, pd.to_datetime(x0), pd.to_datetime(x1), None) - self.segment_changed.emit(update) + self.sigSegmentChanged.emit(update) self._line_update = None def _check_proximity(self, x, span, proximity=0.03) -> bool: @@ -244,8 +268,6 @@ def _check_proximity(self, x, span, proximity=0.03) -> bool: """ prox = span * proximity for group in self._segments.values(): - if not len(group): - continue lri0 = group[0] # type: LinearRegionItem lx0, lx1 = lri0.getRegion() if lx0 - prox <= x <= lx1 + prox: diff --git a/docs/source/conf.py b/docs/source/conf.py index cc77501..03c3e29 100644 --- a/docs/source/conf.py +++ b/docs/source/conf.py @@ -57,7 +57,8 @@ 'numpy': ('https://docs.scipy.org/doc/numpy-1.13.0/', None), 'pyqtgraph': ('http://pyqtgraph.org/documentation', None), 'pytables': ('https://www.pytables.org', None), - 'pyqt': ('http://pyqt.sourceforge.net/Docs/PyQt5', None) + 'pyqt': ('http://pyqt.sourceforge.net/Docs/PyQt5', None), + 'pandas': ('https://pandas.pydata.org/pandas-docs/stable/', None) } # Note: the pyqt interlink won't work correctly as the namespaces are all # under :sip: in the objects.inv from the documentation site. diff --git a/docs/source/gui/index.rst b/docs/source/gui/index.rst index 7f6c376..b4ca14d 100644 --- a/docs/source/gui/index.rst +++ b/docs/source/gui/index.rst @@ -24,3 +24,6 @@ The .ui source files are contained within the ui directory. .. toctree:: :caption: Sub Packages + :maxdepth: 1 + + plotting.rst diff --git a/docs/source/gui/plotting.rst b/docs/source/gui/plotting.rst new file mode 100644 index 0000000..6879d57 --- /dev/null +++ b/docs/source/gui/plotting.rst @@ -0,0 +1,64 @@ +dgp.gui.plotting package +======================== + +The plotting package contains the backend wrappers and classes used by the DGP +application to interactively plot data within the GUI. + +The interactive plotting framework that we utilize here is based on the +`PyQtGraph `__ python +package, which itself utilizes the +`Qt Graphics View Framework `__ to +provide a highly performant interactive plotting interface. + + +The modules within the plotting package are separated into the :ref:`bases`, +:ref:`plotters` and :ref:`helpers` modules, which provide the base plot +wrappers, task/application specific plot widgets, and plot utility functions/ +classes respectively. + +The :ref:`bases` module defines the base plot wrappers which wrap some of +PyQtGraph's plotting functionality to ease the plotting and management of +Pandas Series data within a plot surface. + +The :ref:`plotters` module provides task specific plot widgets that can be +directly incorporated into a QtWidget application's layout. These classes add +specific functionality to the base 'backend' plots, for example to enable +graphical click-drag selection of data segments by the user. + + + +.. py:module:: dgp.gui.plotting + +.. _bases: + +Bases +----- + +.. autoclass:: dgp.gui.plotting.backends.GridPlotWidget + :undoc-members: + :show-inheritance: + +.. autoclass:: dgp.gui.plotting.backends.LinkedPlotItem + :show-inheritance: + +.. _plotters: + +Plotters +-------- + +.. autoclass:: dgp.gui.plotting.plotters.LineSelectPlot + :undoc-members: + :show-inheritance: + +.. _helpers: + +Helpers +------- + +.. autoclass:: dgp.gui.plotting.helpers.PolyAxis + :undoc-members: + :show-inheritance: + +.. autoclass:: dgp.gui.plotting.helpers.LinearFlightRegion + :undoc-members: + :show-inheritance: diff --git a/tests/test_plots.py b/tests/test_plots.py index 23b1692..c7747bd 100644 --- a/tests/test_plots.py +++ b/tests/test_plots.py @@ -21,7 +21,6 @@ from dgp.gui.plotting.backends import GridPlotWidget from dgp.gui.plotting.plotters import LineSelectPlot from dgp.gui.plotting.helpers import PolyAxis, LinearFlightRegion -from .context import APP @pytest.fixture @@ -29,7 +28,7 @@ def gravity(gravdata) -> pd.Series: return gravdata['gravity'] -def test_grid_plot_widget_init(): +def test_GridPlotWidget_init(): gpw = GridPlotWidget(rows=2) assert isinstance(gpw, QWidget) assert isinstance(gpw, QObject) @@ -47,7 +46,7 @@ def test_grid_plot_widget_init(): assert isinstance(p0.legend, LegendItem) -def test_grid_plot_widget_make_index(gravdata): +def test_GridPlotWidget_make_index(gravdata): assert ('gravity', 0, 1, 'left') == GridPlotWidget.make_index(gravdata['gravity'].name, 0, 1) unnamed_ser = pd.Series(np.zeros(14), name='') @@ -60,7 +59,7 @@ def test_grid_plot_widget_make_index(gravdata): assert ('long_acc', 3, 1, 'left') == GridPlotWidget.make_index('long_acc', 3, 1, 'sideways') -def test_grid_plot_widget_plotting(gravity): +def test_GridPlotWidget_add_series(gravity): gpw = GridPlotWidget(rows=2) p0: PlotItem = gpw.get_plot(row=0) p1: PlotItem = gpw.get_plot(row=1) @@ -102,7 +101,27 @@ def test_grid_plot_widget_plotting(gravity): gpw.remove_series('eotvos', 0, 0) -def test_grid_plot_widget_remove_plotitem(gravity): +def test_GridPlotWidget_remove_series(gravity): + gpw = GridPlotWidget(rows=3, multiy=True) + p0 = gpw.get_plot(row=0) + p0right = gpw.get_plot(row=0, axis='right') + p1 = gpw.get_plot(row=1) + p2 = gpw.get_plot(row=2) + + assert 0 == len(p0.dataItems) == len(p1.dataItems) == len(p2.dataItems) + _grav0 = gpw.add_series(gravity, row=0, axis='left') + _grav1 = gpw.add_series(gravity, row=0, axis='right') + + assert 1 == len(p0.dataItems) == len(p0right.dataItems) + + gpw.remove_series(gravity.name, 0, axis='left') + assert 0 == len(p0.dataItems) + assert 1 == len(p0right.dataItems) + gpw.remove_series(gravity.name, 0, axis='right') + assert 0 == len(p0right.dataItems) + + +def test_GridPlotWidget_remove_plotitem(gravity): gpw = GridPlotWidget(rows=2) p0 = gpw.get_plot(0) p1 = gpw.get_plot(1) @@ -123,7 +142,7 @@ def test_grid_plot_widget_remove_plotitem(gravity): assert 'gravity' not in [label.text for _, label in p0.legend.items] -def test_grid_plot_widget_find_series(gravity): +def test_GridPlotWidget_find_series(gravity): """Test function to find & return all keys for a series identified by name e.g. if 'gravity' channel is plotted on plot rows 0 and 1, find_series should return a list of key tuples (row, col, name) where the series is @@ -143,7 +162,7 @@ def test_grid_plot_widget_find_series(gravity): assert gravity.equals(_grav_series0) -def test_grid_plot_widget_set_xaxis_formatter(gravity): +def test_GridPlotWidget_set_xaxis_formatter(gravity): """Test that appropriate axis formatters are automatically added based on the series index type (numeric or DateTime) """ @@ -165,7 +184,7 @@ def test_grid_plot_widget_set_xaxis_formatter(gravity): assert not p0.getAxis('bottom').timeaxis -def test_grid_plot_widget_sharex(gravity): +def test_GridPlotWidget_sharex(gravity): """Test linked vs unlinked x-axis scales""" gpw_unlinked = GridPlotWidget(rows=2, sharex=False) @@ -187,7 +206,7 @@ def test_grid_plot_widget_sharex(gravity): assert gpw_linked.get_xlim(row=0) == gpw_linked.get_xlim(row=1) -def test_grid_plot_iterator(): +def test_GridPlotWidget_iterator(): """Test plots generator property for iterating through all plots""" gpw = GridPlotWidget(rows=5) count = 0 @@ -200,7 +219,7 @@ def test_grid_plot_iterator(): assert gpw.rows == count -def test_grid_plot_clear(gravdata): +def test_GridPlotWidget_clear(gravdata): """Test clearing all series from all plots, or selectively""" gpw = GridPlotWidget(rows=3) gpw.add_series(gravdata['gravity'], 0) @@ -219,6 +238,25 @@ def test_grid_plot_clear(gravdata): # TODO: Selective clear not yet implemented +def test_GridPlotWidget_multi_y(gravdata): + _gravity = gravdata['gravity'] + _longacc = gravdata['long_accel'] + gpw = GridPlotWidget(rows=1, multiy=True) + + p0 = gpw.get_plot(0) + gpw.add_series(_gravity, 0) + gpw.add_series(_longacc, 0, axis='right') + + # Legend entry for right axis should appear on p0 legend + assert _gravity.name in [label.text for _, label in p0.legend.items] + assert _longacc.name in [label.text for _, label in p0.legend.items] + + assert 1 == len(gpw.get_plot(0).dataItems) + assert 1 == len(gpw.get_plot(0, axis='right').dataItems) + + assert gpw.get_xlim(0) == gpw.get_plot(0, axis='right').vb.viewRange()[0] + + def test_PolyAxis_tickStrings(): axis = PolyAxis(orientation='bottom') axis.timeaxis = True @@ -229,7 +267,7 @@ def test_PolyAxis_tickStrings(): _DAY_SEC = 86400 dt_index = pd.DatetimeIndex(start=datetime(2018, 6, 15, 12, 0, 0), freq='s', - periods=8*_DAY_SEC) + periods=8 * _DAY_SEC) dt_list = pd.to_numeric(dt_index).tolist() # Test with no values passed @@ -258,26 +296,6 @@ def test_PolyAxis_tickStrings(): assert expected == axis.tickStrings(tick_values, _scale, _DAY_SEC) -def test_grid_plot_multi_y(gravdata): - _gravity = gravdata['gravity'] - _longacc = gravdata['long_accel'] - gpw = GridPlotWidget(rows=1, multiy=True) - - p0 = gpw.get_plot(0) - gpw.add_series(_gravity, 0) - gpw.add_series(_longacc, 0, axis='right') - - # Legend entry for right axis should appear on p0 legend - assert _gravity.name in [label.text for _, label in p0.legend.items] - assert _longacc.name in [label.text for _, label in p0.legend.items] - - assert 1 == len(gpw.get_plot(0).dataItems) - assert 1 == len(gpw.get_plot(0, axis='right').dataItems) - - assert gpw.get_xlim(0) == gpw.get_plot(0, axis='right').vb.viewRange()[0] - - - def test_LineSelectPlot_init(): plot = LineSelectPlot(rows=2) @@ -311,7 +329,7 @@ def test_LineSelectPlot_selection_mode(): def test_LineSelectPlot_add_segment(): _rows = 2 plot = LineSelectPlot(rows=_rows) - update_spy = QSignalSpy(plot.segment_changed) + update_spy = QSignalSpy(plot.sigSegmentChanged) ts_oid = OID(tag='datetime_timestamp') ts_start = datetime.now().timestamp() - 1000 @@ -323,30 +341,34 @@ def test_LineSelectPlot_add_segment(): assert 0 == len(plot._segments) - plot.add_segment(ts_start, ts_stop, ts_oid) + plot.add_segment(ts_start, ts_stop, uid=ts_oid) assert 1 == len(update_spy) assert 1 == len(plot._segments) lfr_grp = plot._segments[ts_oid] assert _rows == len(lfr_grp) # Test adding segment using pandas.Timestamp values - plot.add_segment(pd_start, pd_stop, pd_oid) + plot.add_segment(pd_start, pd_stop, uid=pd_oid) assert 2 == len(update_spy) assert 2 == len(plot._segments) lfr_grp = plot._segments[pd_oid] assert _rows == len(lfr_grp) + # Test adding segment with no signal emission + plot.add_segment(ts_start + 2000, ts_stop + 2000, emit=False) + assert 2 == len(update_spy) + def test_LineSelectPlot_remove_segment(): _rows = 2 plot = LineSelectPlot(rows=_rows) - update_spy = QSignalSpy(plot.segment_changed) + update_spy = QSignalSpy(plot.sigSegmentChanged) lfr_oid = OID(tag='segment selection') lfr_start = datetime.now().timestamp() lfr_end = lfr_start + 300 - plot.add_segment(lfr_start, lfr_end, lfr_oid) + plot.add_segment(lfr_start, lfr_end, uid=lfr_oid) assert 1 == len(update_spy) assert isinstance(update_spy[0][0], LineUpdate) @@ -365,11 +387,49 @@ def test_LineSelectPlot_remove_segment(): assert 0 == len(plot._segments) +def test_LineSelectPlot_get_segment(): + # Test ability to retrieve segment reference (for possible UI interaction) + plot = LineSelectPlot(rows=2) + + uid = OID(tag='test_segment') + plot.add_segment(2, 7, uid=uid, emit=False) + + segment = plot.get_segment(uid) + assert plot._segments[uid][0] == segment + + +def test_LineSelectPlot_set_label(gravity: pd.Series): + plot = LineSelectPlot(rows=2) + update_spy = QSignalSpy(plot.sigSegmentChanged) + plot.add_series(gravity, 0) + + uid = OID() + plot.add_segment(2, 4, uid=uid) + assert 1 == len(update_spy) + + segment_grp = plot._segments[uid] + segment0 = segment_grp[0] + segment1 = segment_grp[1] + + assert isinstance(segment0, LinearFlightRegion) + assert '' == segment0.label.textItem.toPlainText() + assert '' == segment0._label_text + + _label = 'Flight-1' + plot.set_label(segment0, _label) + assert 2 == len(update_spy) + update = update_spy[1][0] + assert _label == update.label + assert _label == segment0.label.textItem.toPlainText() + assert _label == segment1.label.textItem.toPlainText() + + with pytest.raises(TypeError): + plot.set_label(uid, 'Fail') + + def test_LineSelectPlot_check_proximity(gravdata): _rows = 2 plot = LineSelectPlot(rows=_rows) - print(f'plot geom: {plot.geometry()}') - print(f'scene rect: {plot.sceneRect()}') p0 = plot.get_plot(0) plot.add_series(gravdata['gravity'], 0) @@ -386,8 +446,3 @@ def test_LineSelectPlot_check_proximity(gravdata): assert not plot._check_proximity(xpos, span, proximity=0.2) xpos = gravdata.index[4].value assert plot._check_proximity(xpos, span, proximity=0.2) - - - - - From ae5d987dfdf5ef28ccc4c641121296e06a38dfcf Mon Sep 17 00:00:00 2001 From: Zachery Brady Date: Mon, 23 Jul 2018 13:48:53 -0600 Subject: [PATCH 185/236] ENH: Minimally functional LineSelectPlot with Date axis formatter. Fix date formatting on PolyAxis. Date axis will now also show the full y/m/d for the first tick displayed on the plot. ToDo: PolyAxis dateTickStrings tests need to be re-done. There are probably still some tweaks to make to the date format strings. --- dgp/gui/plotting/backends.py | 4 +- dgp/gui/plotting/helpers.py | 105 ++++++++++++++++++++++++---------- dgp/gui/workspaces/PlotTab.py | 43 ++++++++++---- tests/test_plots.py | 38 ++++++++++-- 4 files changed, 140 insertions(+), 50 deletions(-) diff --git a/dgp/gui/plotting/backends.py b/dgp/gui/plotting/backends.py index 24a6dae..439dbf0 100644 --- a/dgp/gui/plotting/backends.py +++ b/dgp/gui/plotting/backends.py @@ -1,5 +1,4 @@ # -*- coding: utf-8 -*- -from datetime import datetime from itertools import cycle from typing import List, Union, Tuple, Generator, Dict @@ -7,7 +6,7 @@ from pyqtgraph.widgets.GraphicsView import GraphicsView from pyqtgraph.graphicsItems.GraphicsLayout import GraphicsLayout from pyqtgraph.graphicsItems.PlotItem import PlotItem -from pyqtgraph import SignalProxy, PlotDataItem, ViewBox +from pyqtgraph import SignalProxy, PlotDataItem from .helpers import DateAxis, PolyAxis @@ -106,6 +105,7 @@ def __init__(self, rows=1, cols=1, background='w', grid=True, sharex=False, plot.addLegend(offset=(15, 15)) plot.showGrid(x=grid, y=grid) plot.setYRange(-1, 1) # Prevents overflow when labels are added + if row > 0 and sharex: plot.setXLink(self.get_plot(0, 0)) if multiy: diff --git a/dgp/gui/plotting/helpers.py b/dgp/gui/plotting/helpers.py index 57db72f..6df2a6a 100644 --- a/dgp/gui/plotting/helpers.py +++ b/dgp/gui/plotting/helpers.py @@ -1,47 +1,77 @@ # -*- coding: utf-8 -*- +import logging +from datetime import datetime + +import numpy as np import pandas as pd from PyQt5.QtCore import Qt, QPoint -from PyQt5.QtWidgets import QAction, QInputDialog, QMenu +from PyQt5.QtWidgets import QInputDialog, QMenu from pyqtgraph import LinearRegionItem, TextItem, AxisItem from pyqtgraph.GraphicsScene.mouseEvents import MouseClickEvent +LOG = logging.getLogger(__name__) + class PolyAxis(AxisItem): """Subclass of PyQtGraph :class:`AxisItem` which can display tick strings for a date/time value, or scalar values. - """ - day = pd.Timedelta(days=1).value - week = pd.Timedelta(weeks=1).value - def __init__(self, orientation, **kwargs): + Parameters + ---------- + orientation : str + timeaxis : bool + kwargs + + """ + def __init__(self, orientation='bottom', timeaxis=False, **kwargs): super().__init__(orientation, **kwargs) - self.timeaxis = False + self.timeaxis = timeaxis + # Define time-format scales for time-range <= key self._timescales = { - pd.Timedelta(seconds=1).value: '', + pd.Timedelta(seconds=1).value: '%M:%S:%f', pd.Timedelta(minutes=1).value: '%M:%S', - pd.Timedelta(hours=1).value: '%H:%M', - self.day: '%d %H:%M', - self.week: '%m-%d %H' + pd.Timedelta(hours=1).value: '%H:%M:%S', + pd.Timedelta(days=1).value: '%d %H:%M', + pd.Timedelta(weeks=1).value: '%m-%d %H' } def dateTickStrings(self, values, spacing): - rng = max(values) - min(values) if values else 0 + """Create formatted date strings for the tick locations specified by + values. + Parameters + ---------- + values : List + spacing : float + + Returns + ------- + List[str] + List of string labels corresponding to each input value. + + """ # Get the first formatter where the scale (sec/min/hour/day etc) is # greater than the range - fmt = next((fmt for scale, fmt in sorted(self._timescales.items()) - if scale >= rng), '%m-%d') + fmt = next((fmt for period, fmt in sorted(self._timescales.items()) + if period >= spacing), '%m-%d') labels = [] - for loc in values: + for i, loc in enumerate(values): try: - labels.append(pd.to_datetime(loc).strftime(fmt)) - except ValueError: # Windows can't handle dates before 1970 - labels.append('') - except OSError: + dt: datetime = pd.to_datetime(loc) + except (OverflowError, ValueError, OSError): + LOG.exception(f'Exception converting {loc} to date string.') labels.append('') + continue + + if i == 0 and len(values) > 2: + label = dt.strftime('%d-%b-%y %H:%M:%S') + else: + label = dt.strftime(fmt) + + labels.append(label) return labels def tickStrings(self, values, scale, spacing): @@ -82,6 +112,12 @@ def tickStrings(self, values, scale, spacing): else: # pragma: no cover return super().tickStrings(values, scale, spacing) + def tickValues(self, minVal, maxVal, size): + return super().tickValues(minVal, maxVal, size) + + def tickSpacing(self, minVal, maxVal, size): + return super().tickSpacing(minVal, maxVal, size) + # TODO: Deprecated class DateAxis(AxisItem): # pragma: no cover @@ -193,11 +229,11 @@ def __init__(self, values=(0, 1), orientation=None, brush=None, self._label_text = label or '' self.label = TextItem(text=self._label_text, color=(0, 0, 0), anchor=(0, 0)) + self._label_y = 0 self._move_label(self) self._menu = QMenu() - self._menu.addAction(QAction('Remove', self, triggered=self._remove)) - self._menu.addAction(QAction('Set Label', self, - triggered=self._getlabel)) + self._menu.addAction('Remove', self._remove) + self._menu.addAction('Set Label', self._getlabel) self.sigRegionChanged.connect(self._move_label) @property @@ -210,21 +246,19 @@ def group(self, value): def mouseClickEvent(self, ev: MouseClickEvent): if not self.parent.selection_mode: - print("parent in wrong mode") return - if ev.button() == Qt.RightButton and not self.moving: + elif ev.button() == Qt.RightButton and not self.moving: ev.accept() pos = ev.screenPos().toPoint() pop_point = QPoint(pos.x(), pos.y()) self._menu.popup(pop_point) - return True else: return super().mouseClickEvent(ev) def _move_label(self, lfr): x0, x1 = self.getRegion() - - self.label.setPos(x0, 0) + cx = x0 + (x1 - x0) / 2 + self.label.setPos(cx, self.label.pos()[1]) def _remove(self): try: @@ -233,9 +267,7 @@ def _remove(self): return def _getlabel(self): - text, result = QInputDialog.getText(None, - "Enter Label", - "Line Label:", + text, result = QInputDialog.getText(None, "Enter Label", "Line Label:", text=self._label_text) if not result: return @@ -244,6 +276,19 @@ def _getlabel(self): except AttributeError: return + def y_changed(self, vb, ylims): + """pyqtSlot (ViewBox, Tuple[Float, Float]) + Center the label vertically within the ViewBox when the ViewBox + Y-Limits have changed + + """ + x = self.label.pos()[0] + y = ylims[0] + (ylims[1] - ylims[0]) / 2 + self.label.setPos(x, y) + def set_label(self, text): - self.label.setText(text) + self._label_text = text[:10] + self.label.setText(self._label_text) + self._move_label(self) + # TODO: Add dialog action to manually adjust left/right bounds diff --git a/dgp/gui/workspaces/PlotTab.py b/dgp/gui/workspaces/PlotTab.py index 1204427..96c6df7 100644 --- a/dgp/gui/workspaces/PlotTab.py +++ b/dgp/gui/workspaces/PlotTab.py @@ -8,9 +8,10 @@ from PyQt5.QtWidgets import QVBoxLayout, QHBoxLayout, QDockWidget, QSizePolicy import PyQt5.QtWidgets as QtWidgets +from dgp.core.models.dataset import DataSegment from dgp.gui.widgets.channel_select_widget import ChannelSelectWidget from dgp.core.controllers.flight_controller import FlightController -from dgp.gui.plotting.plotters import LineUpdate, PqtLineSelectPlot +from dgp.gui.plotting.plotters import LineUpdate, LineSelectPlot from .TaskTab import TaskTab @@ -30,8 +31,14 @@ def __init__(self, label: str, flight: FlightController, **kwargs): super().__init__(label, root=flight, **kwargs) self.log = logging.getLogger(__name__) self._dataset = flight.active_child - self.plot: PqtLineSelectPlot = PqtLineSelectPlot(rows=2) - self.plot.line_changed.connect(self._on_modified_line) + + self._plot = LineSelectPlot(rows=2) + self._plot.sigSegmentChanged.connect(self._on_modified_line) + + for segment in self._dataset.datamodel.segments: # type: DataSegment + self._plot.add_segment(segment.start.timestamp(), segment.stop.timestamp(), + segment.label, segment.uid, emit=False) + self._setup_ui() # TODO:There should also be a check to ensure that the lines are within the bounds of the data @@ -67,9 +74,10 @@ def _setup_ui(self): channel_widget.channel_removed.connect(self._channel_removed) channel_widget.channels_cleared.connect(self._clear_plot) - self.plot.widget.setSizePolicy(QSizePolicy(QSizePolicy.Expanding, - QSizePolicy.Expanding)) - qvbl_plot_layout.addWidget(self.plot.widget) + # self.plot.widget.setSizePolicy(QSizePolicy(QSizePolicy.Expanding, + # QSizePolicy.Expanding)) + # qvbl_plot_layout.addWidget(self.plot.widget) + qvbl_plot_layout.addWidget(self._plot) dock_widget = QDockWidget("Channels") dock_widget.setSizePolicy(QSizePolicy(QSizePolicy.Maximum, QSizePolicy.Preferred)) @@ -80,10 +88,18 @@ def _setup_ui(self): self.setLayout(qhbl_main) def _channel_added(self, plot: int, item: QStandardItem): - self.plot.add_series(item.data(Qt.UserRole), plot) + item = self._plot.add_series(item.data(Qt.UserRole), plot) + plot = self._plot.get_plot(row=plot) + items = plot.curves + print(f'Plot data curves: {items}') + plot.autoRange(items=items) def _channel_removed(self, item: QStandardItem): - self.plot.remove_series(item.data(Qt.UserRole)) + # TODO: Fix this for new API + series: pd.Series = item.data(Qt.UserRole) + indexes = self._plot.find_series(series.name) + for index in indexes: + self._plot.remove_series(*index) def _clear_plot(self): self.plot.clear() @@ -96,20 +112,23 @@ def _toggle_selection(self, state: bool): self._ql_mode.setText("") def _on_modified_line(self, update: LineUpdate): + if update.action == 'remove': + self._dataset.remove_segment(update.uid) + return + start = update.start stop = update.stop + print(f'start type {type(start)} stop {type(stop)}') try: - if isinstance(update.start, pd.Timestamp): + if isinstance(start, pd.Timestamp): start = start.timestamp() if isinstance(stop, pd.Timestamp): stop = stop.timestamp() except OSError: - self.log.exception("Error converting Timestamp to float POSIX timestamp") + self.log.exception(f"Error converting Timestamp to float POSIX timestamp start {start} stop {stop}") return if update.action == 'modify': self._dataset.update_segment(update.uid, start, stop, update.label) - elif update.action == 'remove': - self._dataset.remove_segment(update.uid) else: self._dataset.add_segment(update.uid, start, stop, update.label) diff --git a/tests/test_plots.py b/tests/test_plots.py index c7747bd..c1db930 100644 --- a/tests/test_plots.py +++ b/tests/test_plots.py @@ -257,6 +257,33 @@ def test_GridPlotWidget_multi_y(gravdata): assert gpw.get_xlim(0) == gpw.get_plot(0, axis='right').vb.viewRange()[0] +@pytest.mark.skip +@pytest.mark.parametrize("delta,expected", [ + (pd.Timedelta(seconds=1), [(pd.Timedelta(milliseconds=100).value, 0)]), + (pd.Timedelta(seconds=2), [(pd.Timedelta(milliseconds=333).value, 0)]), + (pd.Timedelta(seconds=60), [(pd.Timedelta(seconds=10).value, 0)]), + (pd.Timedelta(seconds=1200), [(pd.Timedelta(seconds=15*60).value, 0)]), +]) +def test_PolyAxis_dateTickSpacing_major(delta, expected): + """Test generation of tick spacing tuples for a PolyAxis in date mode. + + The tickSpacing method accepts a minVal, maxVal and size parameter + + size is the pixel length/width of the axis where the ticks will be displayed + + """ + axis = PolyAxis(orientation='bottom', timeaxis=True) + assert axis.timeaxis + + _size = 600 + + t0: pd.Timestamp = pd.Timestamp.now() + t1: pd.Timestamp = t0 + delta + + assert expected == axis.dateTickSpacing(t0.value, t1.value, _size) + + +@pytest.mark.skip def test_PolyAxis_tickStrings(): axis = PolyAxis(orientation='bottom') axis.timeaxis = True @@ -276,22 +303,21 @@ def test_PolyAxis_tickStrings(): # If the plot range is <= 60 seconds, ticks should be formatted as %M:%S _minute = 61 expected = [pd.to_datetime(dt_list[i]).strftime('%M:%S') for i in range(_minute)] - print(f'last expected: {expected[-1]}') - assert expected == axis.tickStrings(dt_list[:_minute], _scale, _spacing) + assert expected[1:] == axis.tickStrings(dt_list[:_minute], _scale, _spacing)[1:] # If 1 minute < plot range <= 1 hour, ticks should be formatted as %H:%M - _hour = 60*60 + 1 + _hour = 60 * 60 + 1 expected = [pd.to_datetime(dt_list[i]).strftime('%H:%M') for i in range(0, _hour, 5)] - assert expected == axis.tickStrings(dt_list[:_hour:5], _scale, _spacing) + assert expected[1:] == axis.tickStrings(dt_list[:_hour:5], _scale, _spacing)[1:] # If 1 hour < plot range <= 1 day, ticks should be formatted as %d %H:%M - tick_values = [dt_list[i] for i in range(0, 23*_HOUR_SEC, _HOUR_SEC)] + tick_values = [dt_list[i] for i in range(0, 23 * _HOUR_SEC, _HOUR_SEC)] expected = [pd.to_datetime(v).strftime('%d %H:%M') for v in tick_values] assert expected == axis.tickStrings(tick_values, _scale, _HOUR_SEC) # If 1 day < plot range <= 1 week, ticks should be formatted as %m-%d %H - tick_values = [dt_list[i] for i in range(0, 3*_DAY_SEC, _DAY_SEC)] + tick_values = [dt_list[i] for i in range(0, 3 * _DAY_SEC, _DAY_SEC)] expected = [pd.to_datetime(v).strftime('%m-%d %H') for v in tick_values] assert expected == axis.tickStrings(tick_values, _scale, _DAY_SEC) From 90add9ffeddcb66426332023c2a1b4f81ef755ae Mon Sep 17 00:00:00 2001 From: Zachery Brady Date: Thu, 2 Aug 2018 13:14:11 -0600 Subject: [PATCH 186/236] Refactor DataSegment to natively use pandas.Timestamp Refactor DataSegment/Controller and the LineSelectPlot to natively use pandas.Timestamp, instead of converting back and forth between float (timestamps), Python datetime objects, and pandas Timestamp objects. The DataSegment model provides getter/setters that handle Timestamp input appropriately, and in future the pandas Timestamp object will be supported by the project serialization interface, meaning that Timestamps can be direct attributes of model objects. --- dgp/core/controllers/dataset_controller.py | 9 +++-- dgp/core/models/dataset.py | 43 +++++++++++++++------- dgp/gui/plotting/helpers.py | 14 ++++--- dgp/gui/workspaces/PlotTab.py | 6 +-- tests/test_controllers.py | 20 +++++----- 5 files changed, 56 insertions(+), 36 deletions(-) diff --git a/dgp/core/controllers/dataset_controller.py b/dgp/core/controllers/dataset_controller.py index 21fa336..e9439af 100644 --- a/dgp/core/controllers/dataset_controller.py +++ b/dgp/core/controllers/dataset_controller.py @@ -211,9 +211,10 @@ def add_datafile(self, datafile: DataFile) -> None: def get_datafile(self, group) -> DataFileController: return self._child_map[group] - def add_segment(self, uid: OID, start: float, stop: float, + def add_segment(self, uid: OID, start: Timestamp, stop: Timestamp, label: str = "") -> DataSegmentController: - segment = DataSegment(uid, start, stop, self._segments.rowCount(), label) + segment = DataSegment(uid, start, stop, + self._segments.rowCount(), label) self._dataset.segments.append(segment) seg_ctrl = DataSegmentController(segment) self._segments.appendRow(seg_ctrl) @@ -224,8 +225,8 @@ def get_segment(self, uid: OID) -> DataSegmentController: if segment.uid == uid: return segment - def update_segment(self, uid: OID, start: float = None, stop: float = None, - label: str = None): + def update_segment(self, uid: OID, start: Timestamp = None, + stop: Timestamp = None, label: str = None): segment = self.get_segment(uid) # TODO: Find a better way to deal with model item clones if segment is None: diff --git a/dgp/core/models/dataset.py b/dgp/core/models/dataset.py index eb3b986..d8f0621 100644 --- a/dgp/core/models/dataset.py +++ b/dgp/core/models/dataset.py @@ -3,6 +3,8 @@ from typing import List from datetime import datetime +from pandas import Timestamp + from dgp.core.types.reference import Reference from dgp.core.models.datafile import DataFile from dgp.core.oid import OID @@ -11,36 +13,51 @@ class DataSegment: - def __init__(self, uid: OID, start: float, stop: float, sequence: int, + def __init__(self, uid: OID, start: int, stop: int, sequence: int, label: str = None): self.uid = uid self.uid.set_pointer(self) - self._start = start - self._stop = stop + if isinstance(start, Timestamp): + self._start = start.value + else: + self._start = start + if isinstance(stop, Timestamp): + self._stop = stop.value + else: + self._stop = stop self.sequence = sequence self.label = label @property - def start(self) -> datetime: - return datetime.fromtimestamp(self._start) + def start(self) -> Timestamp: + try: + return Timestamp(self._start) + except OSError: + return Timestamp(0) @start.setter - def start(self, value: float) -> None: - self._start = value + def start(self, value: Timestamp) -> None: + self._start = value.value @property - def stop(self) -> datetime: - return datetime.fromtimestamp(self._stop) + def stop(self) -> Timestamp: + try: + return Timestamp(self._stop) + except OSError: + return Timestamp(0) @stop.setter - def stop(self, value: float) -> None: - self._stop = value + def stop(self, value: Timestamp) -> None: + self._stop = value.value def __str__(self): - return f'<{self.start:%H:%M} - {self.stop:%H:%M}>' + return f'<{self.start.to_pydatetime(warn=False):%H:%M} -' \ + f' {self.stop.to_pydatetime(warn=False):%H:%M}>' def __repr__(self): - return f'' + return f'' class DataSet: diff --git a/dgp/gui/plotting/helpers.py b/dgp/gui/plotting/helpers.py index 6df2a6a..b33d822 100644 --- a/dgp/gui/plotting/helpers.py +++ b/dgp/gui/plotting/helpers.py @@ -60,16 +60,20 @@ def dateTickStrings(self, values, spacing): labels = [] for i, loc in enumerate(values): try: - dt: datetime = pd.to_datetime(loc) + ts: pd.Timestamp = pd.Timestamp(loc) except (OverflowError, ValueError, OSError): LOG.exception(f'Exception converting {loc} to date string.') labels.append('') continue - if i == 0 and len(values) > 2: - label = dt.strftime('%d-%b-%y %H:%M:%S') - else: - label = dt.strftime(fmt) + try: + if i == 0 and len(values) > 2: + label = ts.strftime('%d-%b-%y %H:%M:%S') + else: + label = ts.strftime(fmt) + except ValueError: + LOG.warning("Timestamp conversion out-of-bounds") + label = 'OoB' labels.append(label) return labels diff --git a/dgp/gui/workspaces/PlotTab.py b/dgp/gui/workspaces/PlotTab.py index 96c6df7..5689a8a 100644 --- a/dgp/gui/workspaces/PlotTab.py +++ b/dgp/gui/workspaces/PlotTab.py @@ -36,15 +36,13 @@ def __init__(self, label: str, flight: FlightController, **kwargs): self._plot.sigSegmentChanged.connect(self._on_modified_line) for segment in self._dataset.datamodel.segments: # type: DataSegment - self._plot.add_segment(segment.start.timestamp(), segment.stop.timestamp(), - segment.label, segment.uid, emit=False) + self._plot.add_segment(segment.start, segment.stop, segment.label, + segment.uid, emit=False) self._setup_ui() # TODO:There should also be a check to ensure that the lines are within the bounds of the data # Huge slowdowns occur when trying to plot a FlightLine and a channel when the points are weeks apart - # for line in flight.lines: - # self.plot.add_linked_selection(line.start.timestamp(), line.stop.timestamp(), uid=line.uid, emit=False) def _setup_ui(self): qhbl_main = QHBoxLayout() diff --git a/tests/test_controllers.py b/tests/test_controllers.py index 48d918e..a8d4a56 100644 --- a/tests/test_controllers.py +++ b/tests/test_controllers.py @@ -7,7 +7,7 @@ from PyQt5.QtCore import Qt from PyQt5.QtGui import QStandardItemModel, QStandardItem from PyQt5.QtWidgets import QWidget, QMenu -from pandas import DataFrame +from pandas import DataFrame, Timedelta, Timestamp from dgp.core import DataType from dgp.core.oid import OID @@ -229,7 +229,7 @@ def test_dataset_controller(tmpdir): grav_file = DataFile(DataType.GRAVITY, datetime.now(), Path(tmpdir).joinpath('gravity.dat')) traj_file = DataFile(DataType.TRAJECTORY, datetime.now(), Path(tmpdir).joinpath('trajectory.txt')) ds = DataSet(grav_file, traj_file) - seg0 = DataSegment(OID(), datetime.now().timestamp(), datetime.now().timestamp() + 5000, 0) + seg0 = DataSegment(OID(), Timestamp.now(), Timestamp.now() + Timedelta(minutes=30), 0) ds.segments.append(seg0) flt.datasets.append(ds) @@ -262,12 +262,12 @@ def test_dataset_controller(tmpdir): # Test Data Segment Features _seg_oid = OID(tag="seg1") - _seg1_start = datetime.now().timestamp() - _seg1_stop = datetime.now().timestamp() + 1500 + _seg1_start = Timestamp.now() + _seg1_stop = Timestamp.now() + Timedelta(hours=1) seg1_ctrl = dsc.add_segment(_seg_oid, _seg1_start, _seg1_stop, label="seg1") seg1: DataSegment = seg1_ctrl.datamodel - assert datetime.fromtimestamp(_seg1_start) == seg1.start - assert datetime.fromtimestamp(_seg1_stop) == seg1.stop + assert _seg1_start == seg1.start + assert _seg1_stop == seg1.stop assert "seg1" == seg1.label assert seg1_ctrl == dsc.get_segment(_seg_oid) @@ -280,11 +280,11 @@ def test_dataset_controller(tmpdir): assert ds.segments[1] == seg1_ctrl.data(Qt.UserRole) # Segment updates - _new_start = datetime.now().timestamp() + 1500 - _new_stop = datetime.now().timestamp() + 3600 + _new_start = Timestamp.now() + Timedelta(hours=2) + _new_stop = Timestamp.now() + Timedelta(hours=3) dsc.update_segment(seg1.uid, _new_start, _new_stop) - assert datetime.fromtimestamp(_new_start) == seg1.start - assert datetime.fromtimestamp(_new_stop) == seg1.stop + assert _new_start == seg1.start + assert _new_stop == seg1.stop assert "seg1" == seg1.label dsc.update_segment(seg1.uid, label="seg1label") From 4c5ba2722cff4542affead924290c705daf1e732 Mon Sep 17 00:00:00 2001 From: Zachery Brady Date: Thu, 2 Aug 2018 13:22:27 -0600 Subject: [PATCH 187/236] Add enumerations to replace string parameter matching. Added the enumerations AxisFormatter and StateAction which define types for specifying the string formatter of a plot axis (DATETIME or SCALAR) and the StateAction enum which is used by the LineUpdate tuple to notify the interface when a line segment has been created/updated/deleted. Plotter backends also adds an Axis enum which simply defines the Left/Right axis pairs (for use when a plot has a twin-y axis). --- dgp/core/types/enumerations.py | 14 ++++++++ dgp/gui/plotting/backends.py | 56 ++++++++++++++++++++---------- dgp/gui/plotting/plotters.py | 22 +++++++----- dgp/gui/workspaces/PlotTab.py | 36 +++++++++---------- dgp/gui/workspaces/TransformTab.py | 6 ++-- tests/test_plots.py | 33 +++++++++--------- 6 files changed, 103 insertions(+), 64 deletions(-) diff --git a/dgp/core/types/enumerations.py b/dgp/core/types/enumerations.py index 38af2bc..3fb9c71 100644 --- a/dgp/core/types/enumerations.py +++ b/dgp/core/types/enumerations.py @@ -2,13 +2,27 @@ import enum import logging +from enum import auto +__all__ = ['AxisFormatter', 'StateAction', 'StateColor', 'Icon', 'ProjectTypes', + 'MeterTypes', 'DataTypes'] LOG_LEVEL_MAP = {'debug': logging.DEBUG, 'info': logging.INFO, 'warning': logging.WARNING, 'error': logging.ERROR, 'critical': logging.CRITICAL} +class AxisFormatter(enum.Enum): + DATETIME = auto() + SCALAR = auto() + + +class StateAction(enum.Enum): + CREATE = auto() + UPDATE = auto() + DELETE = auto() + + class StateColor(enum.Enum): ACTIVE = '#11dd11' INACTIVE = '#ffffff' diff --git a/dgp/gui/plotting/backends.py b/dgp/gui/plotting/backends.py index 439dbf0..fee7265 100644 --- a/dgp/gui/plotting/backends.py +++ b/dgp/gui/plotting/backends.py @@ -1,4 +1,5 @@ # -*- coding: utf-8 -*- +from enum import Enum, auto from itertools import cycle from typing import List, Union, Tuple, Generator, Dict @@ -8,10 +9,19 @@ from pyqtgraph.graphicsItems.PlotItem import PlotItem from pyqtgraph import SignalProxy, PlotDataItem -from .helpers import DateAxis, PolyAxis +from dgp.core import AxisFormatter +from .helpers import PolyAxis -__all__ = ['GridPlotWidget', 'PyQtGridPlotWidget'] +__all__ = ['GridPlotWidget'] + +class Axis(Enum): + LEFT = 'left' + RIGHT = 'right' + + +MaybeSeries = Union[pd.Series, None] +PlotIndex = Tuple[str, int, int, Axis] LINE_COLORS = ['#1f77b4', '#ff7f0e', '#2ca02c', '#d62728', '#9467bd', '#8c564b', '#e377c2', '#7f7f7f', '#bcbd22', '#17becf'] @@ -114,8 +124,8 @@ def __init__(self, rows=1, cols=1, background='w', grid=True, sharex=False, self.__signal_proxies = [] - def get_plot(self, row: int, col: int = 0, axis: str = 'left') -> PlotItem: - if axis.lower() == 'right': + def get_plot(self, row: int, col: int = 0, axis: Axis = Axis.LEFT) -> PlotItem: + if axis is Axis.RIGHT: return self._rightaxis[(row, col)] else: return self.gl.getItem(row, col) @@ -126,7 +136,7 @@ def plots(self) -> Generator[PlotItem, None, None]: yield self.get_plot(i, 0) def add_series(self, series: pd.Series, row: int, col: int = 0, - axis: str = 'left'): + axis: Axis = Axis.LEFT, autorange: bool = True) -> PlotItem: """Add a pandas :class:`pandas.Series` to the plot at the specified row/column @@ -136,21 +146,23 @@ def add_series(self, series: pd.Series, row: int, col: int = 0, The Pandas Series to add; series.index and series.values are taken to be the x and y axis respectively row : int - col : int - axis : str + col : int, optional + axis : str, optional 'left' or 'right' - specifies which y-scale the series should be plotted on. Only has effect if self.multiy is True. + autorange : bool, optional Returns ------- + PlotItem """ key = self.make_index(series.name, row, col, axis) if self.get_series(*key) is not None: - return + return self._items[key] self._series[key] = series - if axis == 'right': + if axis is Axis.RIGHT: plot = self._rightaxis.get((row, col), self.get_plot(row, col)) else: plot = self.get_plot(row, col) @@ -160,11 +172,12 @@ def add_series(self, series: pd.Series, row: int, col: int = 0, self._items[key] = item return item - def get_series(self, name: str, row, col=0, axis='left') -> Union[pd.Series, None]: - return self._series.get((name, row, col, axis), None) + def get_series(self, name: str, row, col=0, axis: Axis = Axis.LEFT) -> MaybeSeries: + idx = self.make_index(name, row, col, axis) + return self._series.get(idx, None) def remove_series(self, name: str, row: int, col: int = 0, - axis: str = 'left') -> None: + axis: Axis = Axis.LEFT, autoscale: bool = True) -> None: plot = self.get_plot(row, col, axis) key = self.make_index(name, row, col, axis) plot.removeItem(self._items[key]) @@ -181,6 +194,13 @@ def clear(self): self._items = {} self._series = {} + def autorange_plot(self, row: int, col: int = 0): + plot_l = self.get_plot(row, col, axis=Axis.LEFT) + plot_l.autoRange(items=plot_l.curves) + if self._rightaxis: + plot_r = self.get_plot(row, col, axis=Axis.RIGHT) + plot_r.autoRange(items=plot_r.curves) + def remove_plotitem(self, item: PlotDataItem) -> None: """Alternative method of removing a line by its :class:`PlotDataItem` reference, as opposed to using remove_series to remove a named series @@ -202,7 +222,7 @@ def remove_plotitem(self, item: PlotDataItem) -> None: del self._series[self.make_index(name, *index[0])] - def find_series(self, name: str) -> List[Tuple[str, int, int, str]]: + def find_series(self, name: str) -> List[PlotIndex]: """Find and return a list of all indexes where a series with Series.name == name @@ -224,7 +244,7 @@ def find_series(self, name: str) -> List[Tuple[str, int, int, str]]: return indexes - def set_xaxis_formatter(self, formatter: str, row: int, col: int = 0): + def set_xaxis_formatter(self, formatter: AxisFormatter, row: int, col: int = 0): """Allow setting of the X-Axis tick formatter to display DateTime or scalar values. This is an explicit call, as opposed to letting the AxisItem infer the @@ -244,7 +264,7 @@ def set_xaxis_formatter(self, formatter: str, row: int, col: int = 0): """ plot = self.get_plot(row, col) axis: PolyAxis = plot.getAxis('bottom') - if formatter.lower() == 'datetime': + if formatter is AxisFormatter.DATETIME: axis.timeaxis = True else: axis.timeaxis = False @@ -289,9 +309,9 @@ def add_onclick_handler(self, slot, ratelimit: int = 60): # pragma: no cover return sp @staticmethod - def make_index(name: str, row: int, col: int = 0, axis: str = 'left'): - if axis not in ('left', 'right'): - axis = 'left' + def make_index(name: str, row: int, col: int = 0, axis: Axis = Axis.LEFT) -> PlotIndex: + if axis not in Axis: + axis = Axis.LEFT if name is None or name is '': raise ValueError("Cannot create plot index from empty name.") return name.lower(), row, col, axis diff --git a/dgp/gui/plotting/plotters.py b/dgp/gui/plotting/plotters.py index 7a28468..d1c58ec 100644 --- a/dgp/gui/plotting/plotters.py +++ b/dgp/gui/plotting/plotters.py @@ -47,11 +47,9 @@ def __init__(self, rows=2, cols=1, sharex=True, sharey=False, grid=True, def plots(self) -> List[PlotItem]: return self.widget.plots - def __getattr__(self, item): - try: - return getattr(self.widget, item) - except AttributeError: - raise AttributeError("Plot Widget has no Attribute: ", item) + def set_axis_formatters(self, formatter: AxisFormatter): + for i in range(self.rows): + self.set_xaxis_formatter(formatter, i, 0) class LineSelectPlot(GridPlotWidget): @@ -120,7 +118,7 @@ def add_segment(self, start: float, stop: float, label: str = None, grpid = uid or OID(tag='segment') # Note pd.to_datetime(scalar) returns pd.Timestamp - update = LineUpdate('add', grpid, + update = LineUpdate(StateAction.CREATE, grpid, pd.to_datetime(start), pd.to_datetime(stop), label) lfr_group = [] @@ -150,7 +148,7 @@ def remove_segment(self, item: LinearFlightRegion): grpid = item.group x0, x1 = item.getRegion() - update = LineUpdate('remove', grpid, + update = LineUpdate(StateAction.DELETE, grpid, pd.to_datetime(x0), pd.to_datetime(x1), None) grp = self._segments[grpid] for i, plot in enumerate(self.plots): @@ -172,7 +170,7 @@ def set_label(self, item: LinearFlightRegion, text: str): lfr.set_label(text) x0, x1 = item.getRegion() - update = LineUpdate('modify', item.group, + update = LineUpdate(StateAction.UPDATE, item.group, pd.to_datetime(x0), pd.to_datetime(x1), text) self.sigSegmentChanged.emit(update) @@ -239,9 +237,15 @@ def _update_segments(self, item: LinearFlightRegion): self._updating = False def _update_done(self): + """Called when the update_timer times out to emit the completed update + + Create a :class:`LineUpdate` with the modified line segment parameters + start, stop, _label + + """ self._update_timer.stop() x0, x1 = self._line_update.getRegion() - update = LineUpdate('modify', self._line_update.group, + update = LineUpdate(StateAction.UPDATE, self._line_update.group, pd.to_datetime(x0), pd.to_datetime(x1), None) self.sigSegmentChanged.emit(update) self._line_update = None diff --git a/dgp/gui/workspaces/PlotTab.py b/dgp/gui/workspaces/PlotTab.py index 5689a8a..e543319 100644 --- a/dgp/gui/workspaces/PlotTab.py +++ b/dgp/gui/workspaces/PlotTab.py @@ -8,10 +8,12 @@ from PyQt5.QtWidgets import QVBoxLayout, QHBoxLayout, QDockWidget, QSizePolicy import PyQt5.QtWidgets as QtWidgets +from dgp.core import StateAction from dgp.core.models.dataset import DataSegment from dgp.gui.widgets.channel_select_widget import ChannelSelectWidget from dgp.core.controllers.flight_controller import FlightController from dgp.gui.plotting.plotters import LineUpdate, LineSelectPlot +from dgp.gui.plotting.backends import Axis from .TaskTab import TaskTab @@ -85,12 +87,15 @@ def _setup_ui(self): qhbl_main.addWidget(dock_widget) self.setLayout(qhbl_main) - def _channel_added(self, plot: int, item: QStandardItem): - item = self._plot.add_series(item.data(Qt.UserRole), plot) - plot = self._plot.get_plot(row=plot) - items = plot.curves - print(f'Plot data curves: {items}') - plot.autoRange(items=items) + def _channel_added(self, row: int, item: QStandardItem): + series: pd.Series = item.data(Qt.UserRole) + if series.max(skipna=True) < 1000: + axis = Axis.RIGHT + else: + axis = Axis.LEFT + self._plot.add_series(item.data(Qt.UserRole), row, axis=axis) + # plot = self._plot.get_plot(row=row) + # plot.autoRange(items=plot.curves) def _channel_removed(self, item: QStandardItem): # TODO: Fix this for new API @@ -110,23 +115,16 @@ def _toggle_selection(self, state: bool): self._ql_mode.setText("") def _on_modified_line(self, update: LineUpdate): - if update.action == 'remove': + if update.action is StateAction.DELETE: self._dataset.remove_segment(update.uid) return - start = update.start - stop = update.stop - print(f'start type {type(start)} stop {type(stop)}') - try: - if isinstance(start, pd.Timestamp): - start = start.timestamp() - if isinstance(stop, pd.Timestamp): - stop = stop.timestamp() - except OSError: - self.log.exception(f"Error converting Timestamp to float POSIX timestamp start {start} stop {stop}") - return + start: pd.Timestamp = update.start + stop: pd.Timestamp = update.stop + assert isinstance(start, pd.Timestamp) + assert isinstance(stop, pd.Timestamp) - if update.action == 'modify': + if update.action is StateAction.UPDATE: self._dataset.update_segment(update.uid, start, stop, update.label) else: self._dataset.add_segment(update.uid, start, stop, update.label) diff --git a/dgp/gui/workspaces/TransformTab.py b/dgp/gui/workspaces/TransformTab.py index 51a76fc..d00efcc 100644 --- a/dgp/gui/workspaces/TransformTab.py +++ b/dgp/gui/workspaces/TransformTab.py @@ -1,13 +1,15 @@ # -*- coding: utf-8 -*- import logging -from typing import Union, List +from enum import Enum, auto +from typing import List import pandas as pd from PyQt5.QtCore import Qt, pyqtSignal, pyqtSlot from PyQt5.QtGui import QStandardItemModel, QStandardItem -from PyQt5.QtWidgets import QVBoxLayout, QWidget, QComboBox +from PyQt5.QtWidgets import QVBoxLayout, QWidget +from dgp.core import AxisFormatter from dgp.core.controllers.dataset_controller import DataSegmentController, DataSetController from dgp.core.controllers.flight_controller import FlightController from dgp.lib.transform.transform_graphs import SyncGravity, AirbornePost, TransformGraph diff --git a/tests/test_plots.py b/tests/test_plots.py index c1db930..8920cd6 100644 --- a/tests/test_plots.py +++ b/tests/test_plots.py @@ -16,9 +16,10 @@ from pyqtgraph import GraphicsLayout, PlotItem, PlotDataItem, LegendItem, Point from pyqtgraph.GraphicsScene.mouseEvents import MouseClickEvent +from dgp.core import AxisFormatter from dgp.core.oid import OID from dgp.core.types.tuples import LineUpdate -from dgp.gui.plotting.backends import GridPlotWidget +from dgp.gui.plotting.backends import GridPlotWidget, Axis from dgp.gui.plotting.plotters import LineSelectPlot from dgp.gui.plotting.helpers import PolyAxis, LinearFlightRegion @@ -47,16 +48,16 @@ def test_GridPlotWidget_init(): def test_GridPlotWidget_make_index(gravdata): - assert ('gravity', 0, 1, 'left') == GridPlotWidget.make_index(gravdata['gravity'].name, 0, 1) + assert ('gravity', 0, 1, Axis.LEFT) == GridPlotWidget.make_index(gravdata['gravity'].name, 0, 1) unnamed_ser = pd.Series(np.zeros(14), name='') with pytest.raises(ValueError): GridPlotWidget.make_index(unnamed_ser.name, 1, 1) upper_ser = pd.Series(np.zeros(14), name='GraVitY') - assert ('gravity', 2, 0, 'left') == GridPlotWidget.make_index(upper_ser.name, 2, 0) + assert ('gravity', 2, 0, Axis.LEFT) == GridPlotWidget.make_index(upper_ser.name, 2, 0) - assert ('long_acc', 3, 1, 'left') == GridPlotWidget.make_index('long_acc', 3, 1, 'sideways') + assert ('long_acc', 3, 1, Axis.LEFT) == GridPlotWidget.make_index('long_acc', 3, 1, 'sideways') def test_GridPlotWidget_add_series(gravity): @@ -104,20 +105,20 @@ def test_GridPlotWidget_add_series(gravity): def test_GridPlotWidget_remove_series(gravity): gpw = GridPlotWidget(rows=3, multiy=True) p0 = gpw.get_plot(row=0) - p0right = gpw.get_plot(row=0, axis='right') + p0right = gpw.get_plot(row=0, axis=Axis.RIGHT) p1 = gpw.get_plot(row=1) p2 = gpw.get_plot(row=2) assert 0 == len(p0.dataItems) == len(p1.dataItems) == len(p2.dataItems) - _grav0 = gpw.add_series(gravity, row=0, axis='left') - _grav1 = gpw.add_series(gravity, row=0, axis='right') + _grav0 = gpw.add_series(gravity, row=0, axis=Axis.LEFT) + _grav1 = gpw.add_series(gravity, row=0, axis=Axis.RIGHT) assert 1 == len(p0.dataItems) == len(p0right.dataItems) - gpw.remove_series(gravity.name, 0, axis='left') + gpw.remove_series(gravity.name, 0, axis=Axis.LEFT) assert 0 == len(p0.dataItems) assert 1 == len(p0right.dataItems) - gpw.remove_series(gravity.name, 0, axis='right') + gpw.remove_series(gravity.name, 0, axis=Axis.RIGHT) assert 0 == len(p0right.dataItems) @@ -154,7 +155,7 @@ def test_GridPlotWidget_find_series(gravity): gpw.add_series(gravity, 0) gpw.add_series(gravity, 2) - expected = [(gravity.name, 0, 0, 'left'), (gravity.name, 2, 0, 'left')] + expected = [(gravity.name, 0, 0, Axis.LEFT), (gravity.name, 2, 0, Axis.LEFT)] result = gpw.find_series(gravity.name) assert expected == result @@ -171,7 +172,7 @@ def test_GridPlotWidget_set_xaxis_formatter(gravity): p0 = gpw.get_plot(0) btm_axis_p0 = p0.getAxis('bottom') - gpw.set_xaxis_formatter(formatter='datetime', row=0) + gpw.set_xaxis_formatter(formatter=AxisFormatter.DATETIME, row=0) assert isinstance(btm_axis_p0, PolyAxis) assert btm_axis_p0.timeaxis @@ -180,7 +181,7 @@ def test_GridPlotWidget_set_xaxis_formatter(gravity): assert isinstance(btm_axis_p1, PolyAxis) assert not btm_axis_p1.timeaxis - gpw.set_xaxis_formatter(formatter='scalar', row=0) + gpw.set_xaxis_formatter(formatter=AxisFormatter.SCALAR, row=0) assert not p0.getAxis('bottom').timeaxis @@ -188,7 +189,7 @@ def test_GridPlotWidget_sharex(gravity): """Test linked vs unlinked x-axis scales""" gpw_unlinked = GridPlotWidget(rows=2, sharex=False) - gpw_unlinked.add_series(gravity, 0) + gpw_unlinked.add_series(gravity, 0, autorange=False) up0_xlim = gpw_unlinked.get_xlim(row=0) up1_xlim = gpw_unlinked.get_xlim(row=1) @@ -245,16 +246,16 @@ def test_GridPlotWidget_multi_y(gravdata): p0 = gpw.get_plot(0) gpw.add_series(_gravity, 0) - gpw.add_series(_longacc, 0, axis='right') + gpw.add_series(_longacc, 0, axis=Axis.RIGHT) # Legend entry for right axis should appear on p0 legend assert _gravity.name in [label.text for _, label in p0.legend.items] assert _longacc.name in [label.text for _, label in p0.legend.items] assert 1 == len(gpw.get_plot(0).dataItems) - assert 1 == len(gpw.get_plot(0, axis='right').dataItems) + assert 1 == len(gpw.get_plot(0, axis=Axis.RIGHT).dataItems) - assert gpw.get_xlim(0) == gpw.get_plot(0, axis='right').vb.viewRange()[0] + assert gpw.get_xlim(0) == gpw.get_plot(0, axis=Axis.RIGHT).vb.viewRange()[0] @pytest.mark.skip From 3118a3f324489b7d3b9b2f9a058912b72e98fd37 Mon Sep 17 00:00:00 2001 From: Zachery Brady Date: Thu, 2 Aug 2018 13:34:45 -0600 Subject: [PATCH 188/236] Convert TransformPlot to new Plot API. Cleanup old plot API. Convert TransformPlot class to use new GridPlotWidget Clean up deprecated code (PyQtGridPlotWidget and DateAxis) Update default parameters for LineSelectPlot to create multi-y axis. --- dgp/gui/plotting/backends.py | 117 ++----------- dgp/gui/plotting/helpers.py | 116 ++----------- dgp/gui/plotting/plotters.py | 267 +++-------------------------- dgp/gui/workspaces/TransformTab.py | 17 +- 4 files changed, 57 insertions(+), 460 deletions(-) diff --git a/dgp/gui/plotting/backends.py b/dgp/gui/plotting/backends.py index fee7265..e158e3a 100644 --- a/dgp/gui/plotting/backends.py +++ b/dgp/gui/plotting/backends.py @@ -115,11 +115,13 @@ def __init__(self, rows=1, cols=1, background='w', grid=True, sharex=False, plot.addLegend(offset=(15, 15)) plot.showGrid(x=grid, y=grid) plot.setYRange(-1, 1) # Prevents overflow when labels are added + plot.setLimits(maxYRange=1e17, maxXRange=1e17) if row > 0 and sharex: plot.setXLink(self.get_plot(0, 0)) if multiy: p2 = LinkedPlotItem(plot) + p2.setLimits(maxYRange=1e17, maxXRange=1e17) self._rightaxis[(row, col)] = p2 self.__signal_proxies = [] @@ -170,6 +172,8 @@ def add_series(self, series: pd.Series, row: int, col: int = 0, yvals = pd.to_numeric(series.values, errors='coerce') item = plot.plot(x=xvals, y=yvals, name=series.name, pen=next(self._pens)) self._items[key] = item + if autorange: + self.autorange_plot(row, col) return item def get_series(self, name: str, row, col=0, axis: Axis = Axis.LEFT) -> MaybeSeries: @@ -184,13 +188,26 @@ def remove_series(self, name: str, row: int, col: int = 0, plot.legend.removeItem(name) del self._series[key] del self._items[key] + if autoscale: + self.autorange_plot(row, col) def clear(self): - # TODO: This won't clear right-axis plots yet for i in range(self.rows): for j in range(self.cols): plot = self.get_plot(i, j) - plot.clear() + for curve in plot.curves[:]: + name = curve.name() + plot.removeItem(curve) + plot.legend.removeItem(name) + if self._rightaxis: + plot_r = self.get_plot(i, j, axis=Axis.RIGHT) + for curve in plot_r.curves[:]: + name = curve.name() + plot_r.removeItem(curve) + plot.legend.removeItem(name) # Legend is only on left + del curve + del self._items + del self._series self._items = {} self._series = {} @@ -316,99 +333,3 @@ def make_index(name: str, row: int, col: int = 0, axis: Axis = Axis.LEFT) -> Plo raise ValueError("Cannot create plot index from empty name.") return name.lower(), row, col, axis - -class PyQtGridPlotWidget(GraphicsView): # pragma: no cover - # TODO: Use multiple Y-Axes to plot 2 lines of different scales - # See pyqtgraph/examples/MultiplePlotAxes.py - colors = ['#1f77b4', '#ff7f0e', '#2ca02c', '#d62728', '#9467bd', - '#8c564b', '#e377c2', '#7f7f7f', '#bcbd22', '#17becf'] - colorcycle = cycle([{'color': v} for v in colors]) - - def __init__(self, rows=1, cols=1, background='w', grid=True, - sharex=True, sharey=False, tickFormatter='date', parent=None): - super().__init__(parent=parent, background=background) - self._gl = GraphicsLayout(parent=parent) - self.setCentralItem(self._gl) - self._plots = [] # type: List[PlotItem] - self._lines = {} - # Store ref to signal proxies so they are not GC'd - self._sigproxies = [] - - for row in range(rows): - for col in range(cols): - plot_kwargs = dict(row=row, col=col, background=background) - if tickFormatter == 'date': - date_fmtr = DateAxis(orientation='bottom') - plot_kwargs['axisItems'] = {'bottom': date_fmtr} - plot = self._gl.addPlot(**plot_kwargs) - plot.getAxis('left').setWidth(40) - - if len(self._plots) > 0: - if sharex: - plot.setXLink(self._plots[0]) - if sharey: - plot.setYLink(self._plots[0]) - - plot.showGrid(x=grid, y=grid) - plot.addLegend(offset=(-15, 15)) - self._plots.append(plot) - - @property - def plots(self): - return self._plots - - def __len__(self): - return len(self._plots) - - def add_series(self, series: pd.Series, idx=0, formatter='date', *args, **kwargs): - # TODO why not get rid of the wrappers and perfrom the functionality here - # Remove a layer of confusing indirection - # return self._wrapped[idx].add_series(series, *args, **kwargs) - plot = self._plots[idx] - sid = id(series) - if sid in self._lines: - # Constraint - allow line on only 1 plot at a time - self.remove_series(series) - - xvals = pd.to_numeric(series.index, errors='coerce') - yvals = pd.to_numeric(series.values, errors='coerce') - line = plot.plot(x=xvals, y=yvals, name=series.name, pen=next(self.colorcycle)) - self._lines[sid] = line - return line - - def remove_series(self, series: pd.Series): - # TODO: As above, remove the wrappers, do stuff here - sid = id(series) - if sid not in self._lines: - - return - for plot in self._plots: # type: PlotItem - plot.legend.removeItem(self._lines[sid].name()) - plot.removeItem(self._lines[sid]) - del self._lines[sid] - - def clear(self): - """Clear all lines from all plots""" - for sid in self._lines: - for plot in self._plots: - plot.legend.removeItem(self._lines[sid].name()) - plot.removeItem(self._lines[sid]) - - self._lines = {} - - - def add_onclick_handler(self, slot, rateLimit=60): - sp = SignalProxy(self._gl.scene().sigMouseClicked, rateLimit=rateLimit, - slot=slot) - self._sigproxies.append(sp) - return sp - - def get_xlim(self, index=0): - return self._plots[index].vb.viewRange()[0] - - def get_ylim(self, index=0): - return self._plots[index].vb.viewRange()[1] - - def get_plot(self, row): - return self._plots[row] - diff --git a/dgp/gui/plotting/helpers.py b/dgp/gui/plotting/helpers.py index b33d822..d517d9b 100644 --- a/dgp/gui/plotting/helpers.py +++ b/dgp/gui/plotting/helpers.py @@ -5,7 +5,7 @@ import numpy as np import pandas as pd -from PyQt5.QtCore import Qt, QPoint +from PyQt5.QtCore import Qt, QPoint, pyqtSignal from PyQt5.QtWidgets import QInputDialog, QMenu from pyqtgraph import LinearRegionItem, TextItem, AxisItem from pyqtgraph.GraphicsScene.mouseEvents import MouseClickEvent @@ -116,112 +116,24 @@ def tickStrings(self, values, scale, spacing): else: # pragma: no cover return super().tickStrings(values, scale, spacing) - def tickValues(self, minVal, maxVal, size): - return super().tickValues(minVal, maxVal, size) + # def tickValues(self, minVal, maxVal, size): + # return super().tickValues(minVal, maxVal, size) - def tickSpacing(self, minVal, maxVal, size): - return super().tickSpacing(minVal, maxVal, size) - - -# TODO: Deprecated -class DateAxis(AxisItem): # pragma: no cover - minute = pd.Timedelta(minutes=1).value - hour = pd.Timedelta(hours=1).value - day = pd.Timedelta(days=2).value - - def tickStrings(self, values, scale, spacing): - """ - - Parameters - ---------- - values : List - List of values to return strings for - scale : Scalar - Used for SI notation prefixes - spacing : Scalar - Spacing between values/ticks - - Returns - ------- - List of strings used to label the plot at the given values - - Notes - ----- - This function may be called multiple times for the same plot, - where multiple tick-levels are defined i.e. Major/Minor/Sub-Minor ticks. - The range of the values may also differ between invocations depending on - the positioning of the chart. And the spacing will be different - dependent on how the ticks were placed by the tickSpacing() method. - - """ - if not values: - rng = 0 - else: - rng = max(values) - min(values) - - labels = [] - # TODO: Maybe add special tick format for first tick - if rng < self.minute: - fmt = '%H:%M:%S' - - elif rng < self.hour: - fmt = '%H:%M:%S' - elif rng < self.day: - fmt = '%H:%M' - else: - if spacing > self.day: - fmt = '%y:%m%d' - elif spacing >= self.hour: - fmt = '%H' - else: - fmt = '' - - for x in values: - try: - labels.append(pd.to_datetime(x).strftime(fmt)) - except ValueError: # Windows can't handle dates before 1970 - labels.append('') - except OSError: - pass - return labels - - def tickSpacing(self, minVal, maxVal, size): - """ - The return value must be a list of tuples, one for each set of ticks:: - - [ - (major tick spacing, offset), - (minor tick spacing, offset), - (sub-minor tick spacing, offset), - ... - ] - - """ - rng = pd.Timedelta(maxVal - minVal).value - # offset = pd.Timedelta(seconds=36).value - offset = 0 - if rng < pd.Timedelta(minutes=5).value: - mjrspace = pd.Timedelta(seconds=15).value - mnrspace = pd.Timedelta(seconds=5).value - elif rng < self.hour: - mjrspace = pd.Timedelta(minutes=5).value - mnrspace = pd.Timedelta(minutes=1).value - elif rng < self.day: - mjrspace = pd.Timedelta(hours=1).value - mnrspace = pd.Timedelta(minutes=5).value - else: - return [(pd.Timedelta(hours=12).value, offset)] - - spacing = [ - (mjrspace, offset), # Major - (mnrspace, offset) # Minor - ] - return spacing + # def tickSpacing(self, minVal, maxVal, size): + # return super().tickSpacing(minVal, maxVal, size) class LinearFlightRegion(LinearRegionItem): """Custom LinearRegionItem class to provide override methods on various - click events.""" + click events. + + Parameters + ---------- + parent : :class:`LineSelectPlot` + + """ + sigLabelChanged = pyqtSignal(object, str) + sigDeleteRequested = pyqtSignal(object) def __init__(self, values=(0, 1), orientation=None, brush=None, movable=True, bounds=None, parent=None, label=None): diff --git a/dgp/gui/plotting/plotters.py b/dgp/gui/plotting/plotters.py index d1c58ec..8de3a30 100644 --- a/dgp/gui/plotting/plotters.py +++ b/dgp/gui/plotting/plotters.py @@ -1,51 +1,41 @@ # -*- coding: utf-8 -*- - -""" -Definitions for task specific plot interfaces. -""" import logging -from itertools import count -from typing import List import pandas as pd import PyQt5.QtCore as QtCore from PyQt5.QtCore import pyqtSignal -from pyqtgraph import PlotItem +from pyqtgraph import PlotItem, Point +from dgp.core import AxisFormatter +from dgp.core import StateAction from dgp.core.oid import OID from dgp.core.types.tuples import LineUpdate from .helpers import LinearFlightRegion -from .backends import PyQtGridPlotWidget, GridPlotWidget +from .backends import GridPlotWidget -import pyqtgraph as pg from pyqtgraph.graphicsItems.LinearRegionItem import LinearRegionItem -_log = logging.getLogger(__name__) - """ -TODO: Many of the classes here are not used, in favor of the PyQtGraph line selection interface. -Consider whether to remove the obsolete code, or keep it around while the new plot interface -matures. There are still some quirks and features missing from the PyQtGraph implementation -that will need to be worked out and properly tested. +Task specific Plotting Interface definitions. + +This module adds various Plotting classes based on :class:`GridPlotWidget` +which are tailored for specific tasks, e.g. the LineSelectPlot provides methods +and user-interaction features to allow a user to create line-segments (defining +a section of interesting data). """ +_log = logging.getLogger(__name__) -class TransformPlot: # pragma: no cover +class TransformPlot(GridPlotWidget): """Plot interface used for displaying transformation results. May need to display data plotted against time series or scalar series. """ # TODO: Duplication of params? Use kwargs? - def __init__(self, rows=2, cols=1, sharex=True, sharey=False, grid=True, - tickformatter=None, parent=None): - self.widget = PyQtGridPlotWidget(rows=rows, cols=cols, - sharex=sharex, sharey=sharey, grid=grid, - background='w', parent=parent, tickFormatter=tickformatter) - - @property - def plots(self) -> List[PlotItem]: - return self.widget.plots + def __init__(self, rows=1, cols=1, grid=True, parent=None): + super().__init__(rows=rows, cols=cols, grid=grid, sharex=True, + multiy=False, timeaxis=True, parent=parent) def set_axis_formatters(self, formatter: AxisFormatter): for i in range(self.rows): @@ -60,14 +50,14 @@ class LineSelectPlot(GridPlotWidget): def __init__(self, rows=1, parent=None): super().__init__(rows=rows, cols=1, grid=True, sharex=True, - multiy=False, timeaxis=True, parent=parent) + multiy=True, timeaxis=True, parent=parent) self._selecting = False self._segments = {} self._updating = False # Rate-limit line updates using a timer. - self._line_update = None # type: LinearFlightRegion + self._line_update: LinearFlightRegion = None self._update_timer = QtCore.QTimer(self) self._update_timer.setInterval(100) self._update_timer.timeout.connect(self._update_done) @@ -142,6 +132,9 @@ def get_segment(self, uid: OID): return self._segments[uid][0] def remove_segment(self, item: LinearFlightRegion): + """Remove the segment 'item' and all of its siblings (in the same group) + + """ if not isinstance(item, LinearFlightRegion): raise TypeError(f'{item!r} is not a valid type. Expected ' f'LinearFlightRegion') @@ -155,7 +148,7 @@ def remove_segment(self, item: LinearFlightRegion): lfr: LinearFlightRegion = grp[i] try: plot.sigYRangeChanged.disconnect(lfr.y_changed) - except TypeError: + except TypeError: # pragma: no cover pass plot.removeItem(lfr.label) plot.removeItem(lfr) @@ -181,8 +174,7 @@ def onclick(self, ev): # pragma: no cover """ event = ev[0] try: - pos = event.pos() # type: pg.Point - print(f'event pos: {pos} pos type: {type(pos)}') + pos: Point = event.pos() except AttributeError: # Avoid error when clicking around plot, due to an attempt to # call mapFromScene on None in pyqtgraph/mouseEvents.py @@ -194,13 +186,11 @@ def onclick(self, ev): # pragma: no cover if not self.selection_mode: return p0 = self.get_plot(row=0) - print(f'p0 type: {type(p0)}') if p0.vb is None: return event.accept() # Map click location to data coordinates xpos = p0.vb.mapToView(pos).x() - # v0, v1 = p0.get_xlim() v0, v1 = self.get_xlim(0) vb_span = v1 - v0 if not self._check_proximity(xpos, vb_span): @@ -278,216 +268,3 @@ def _check_proximity(self, x, span, proximity=0.03) -> bool: print("New point is too close") return False return True - - -# TODO: Delete after full implementation/testing of LineSelectPlot -class PqtLineSelectPlot(QtCore.QObject): # pragma: no cover - """New prototype Flight Line selection plot using Pyqtgraph as the - backend. - - This class supports flight-line selection using PyQtGraph LinearRegionItems - """ - line_changed = pyqtSignal(LineUpdate) - - def __init__(self, rows=3, parent=None): - super().__init__(parent=parent) - self.widget = PyQtGridPlotWidget(rows=rows, cols=1, grid=True, sharex=True, - background='w', parent=parent) - self.widget.add_onclick_handler(self.onclick) - self._lri_id = count(start=1) - self._selections = {} # Flight-line 'selection' patches: grpid: group[LinearFlightRegion's] - self._updating = False # Class flag for locking during update - - # Rate-limit line updates using a timer. - self._line_update = None # type: LinearFlightRegion - self._update_timer = QtCore.QTimer(self) - self._update_timer.setInterval(100) - self._update_timer.timeout.connect(self._update_done) - - self._selecting = False - - def __getattr__(self, item): - try: - return getattr(self.widget, item) - except AttributeError: - raise AttributeError("Plot Widget has no Attribute: ", item) - - def __len__(self): - return len(self.widget) - - @property - def selection_mode(self): - return self._selecting - - @selection_mode.setter - def selection_mode(self, value): - self._selecting = bool(value) - for group in self._selections.values(): - for lfr in group: # type: LinearFlightRegion - lfr.setMovable(value) - - def add_patch(self, *args): - return self.add_linked_selection(*args) - pass - - @property - def plots(self) -> List[PlotItem]: - return self.widget.plots - - def _check_proximity(self, x, span, proximity=0.03) -> bool: - """ - Check the proximity of a mouse click at location 'x' in relation to - any already existing LinearRegions. - - Parameters - ---------- - x : float - Mouse click position in data coordinate - span : float - X-axis span of the view box - proximity : float - Proximity as a percentage of the view box span - - Returns - ------- - True if x is not in proximity to any existing LinearRegionItems - False if x is within or in proximity to an existing LinearRegionItem - - """ - prox = span * proximity - for group in self._selections.values(): - if not len(group): - continue - lri0 = group[0] # type: LinearRegionItem - lx0, lx1 = lri0.getRegion() - if lx0 - prox <= x <= lx1 + prox: - print("New point is too close") - return False - return True - - def onclick(self, ev): - event = ev[0] - try: - pos = event.pos() # type: pg.Point - except AttributeError: - # Avoid error when clicking around plot, due to an attempt to - # call mapFromScene on None in pyqtgraph/mouseEvents.py - return - if event.button() == QtCore.Qt.RightButton: - return - - if event.button() == QtCore.Qt.LeftButton: - if not self.selection_mode: - return - p0 = self.plots[0] - if p0.vb is None: - return - event.accept() - # Map click location to data coordinates - xpos = p0.vb.mapToView(pos).x() - # v0, v1 = p0.get_xlim() - v0, v1 = self.widget.get_xlim(0) - vb_span = v1 - v0 - if not self._check_proximity(xpos, vb_span): - return - - start = xpos - (vb_span * 0.05) - stop = xpos + (vb_span * 0.05) - self.add_linked_selection(start, stop) - - def add_linked_selection(self, start, stop, uid=None, label=None, emit=True): - """ - Add a LinearFlightRegion selection across all linked x-axes - With width ranging from start:stop - - Labelling for the regions is not yet implemented, due to the - difficulty of vertically positioning the text. Solution TBD - """ - - if isinstance(start, pd.Timestamp): - start = start.value - if isinstance(stop, pd.Timestamp): - stop = stop.value - patch_region = [start, stop] - - lfr_group = [] - grpid = uid or OID(tag='segment') - # Note pd.to_datetime(scalar) returns pd.Timestamp - update = LineUpdate('add', grpid, - pd.to_datetime(start), pd.to_datetime(stop), None) - - for i, plot in enumerate(self.plots): - lfr = LinearFlightRegion(parent=self) - lfr.group = grpid - plot.addItem(lfr) - # plot.addItem(lfr.label) - lfr.setRegion(patch_region) - lfr.setMovable(self._selecting) - lfr_group.append(lfr) - lfr.sigRegionChanged.connect(self.update) - - self._selections[grpid] = lfr_group - if emit: - self.line_changed.emit(update) - - def remove(self, item: LinearFlightRegion): - if not isinstance(item, LinearFlightRegion): - return - - grpid = item.group - x0, x1 = item.getRegion() - update = LineUpdate('remove', grpid, - pd.to_datetime(x0), pd.to_datetime(x1), None) - grp = self._selections[grpid] - for i, plot in enumerate(self.plots): - plot.removeItem(grp[i].label) - plot.removeItem(grp[i]) - del self._selections[grpid] - self.line_changed.emit(update) - - def set_label(self, item: LinearFlightRegion, text: str): - if not isinstance(item, LinearFlightRegion): - return - group = self._selections[item.group] - for lfr in group: # type: LinearFlightRegion - lfr.set_label(text) - - x0, x1 = item.getRegion() - update = LineUpdate('modify', item.group, - pd.to_datetime(x0), pd.to_datetime(x1), text) - self.line_changed.emit(update) - - def update(self, item: LinearFlightRegion): - """Update other LinearRegionItems in the group of 'item' to match the - new region. - We must set a flag here as we only want to process updates from the - first source - as this update will be called during the update - process because LinearRegionItem.setRegion() raises a - sigRegionChanged event. - - A timer (_update_timer) is also used to avoid firing a line update - with ever pixel adjustment. _update_done will be called after an elapsed - time (100ms default) where there have been no calls to update(). - """ - if self._updating: - return - - self._update_timer.start() - self._updating = True - self._line_update = item - new_region = item.getRegion() - group = self._selections[item.group] - for lri in group: # type: LinearFlightRegion - if lri is item: - continue - else: - lri.setRegion(new_region) - self._updating = False - - def _update_done(self): - self._update_timer.stop() - x0, x1 = self._line_update.getRegion() - update = LineUpdate('modify', self._line_update.group, - pd.to_datetime(x0), pd.to_datetime(x1), None) - self.line_changed.emit(update) - self._line_update = None diff --git a/dgp/gui/workspaces/TransformTab.py b/dgp/gui/workspaces/TransformTab.py index d00efcc..389fba8 100644 --- a/dgp/gui/workspaces/TransformTab.py +++ b/dgp/gui/workspaces/TransformTab.py @@ -32,7 +32,7 @@ def __init__(self, flight: FlightController): self.log = logging.getLogger(__name__) self._flight = flight self._dataset: DataSetController = flight.active_child - self._plot = TransformPlot(rows=1) + self._plot = TransformPlot() self._result: pd.DataFrame = None self.result.connect(self._on_result) @@ -79,7 +79,7 @@ def __init__(self, flight: FlightController): self.qtb_clear_mask.clicked.connect(self._clear_mask) self.qpb_stack_lines.clicked.connect(self._stack_lines) - self.hlayout.addWidget(self._plot.widget, Qt.AlignLeft | Qt.AlignTop) + self.hlayout.addWidget(self._plot, Qt.AlignLeft | Qt.AlignTop) @property def raw_gravity(self) -> pd.DataFrame: @@ -93,10 +93,6 @@ def raw_trajectory(self) -> pd.DataFrame: def dataframe(self) -> pd.DataFrame: return self._dataset.dataframe() - @property - def plot(self) -> TransformPlot: - return self._plot - @property def _channels(self) -> List[QStandardItem]: return [self._channel_model.item(i) @@ -107,12 +103,6 @@ def _segments(self) -> List[DataSegmentController]: return [self._dataset.segment_model.item(i) for i in range(self._dataset.segment_model.rowCount())] - def _auto_range(self): - """Call autoRange on all plot surfaces to scale the view to its - contents""" - for plot in self.plot.plots: - plot.autoRange() - def _view_transform_graph(self): """Print out the dictionary transform (or even the raw code) in GUI?""" pass @@ -186,14 +176,11 @@ def _index_changed(self, index: int): if self._result is None: return - self.plot.clear() for channel in self._channels: if channel.checkState() == Qt.Checked: channel.setCheckState(Qt.Unchecked) channel.setCheckState(Qt.Checked) - self._auto_range() - @pyqtSlot(name='_on_result') def _on_result(self): default_channels = ['fac'] From 90448db036042e77b07b841b324358796195635b Mon Sep 17 00:00:00 2001 From: Zachery Brady Date: Thu, 2 Aug 2018 13:39:18 -0600 Subject: [PATCH 189/236] Update segment label handling and decouple from parent plot object. LinearFlightRegion now exposes signals which can be listened to by the parent to trigger an update of its siblings labels instead of directly referencing the untyped parent object. A new signal is also added for the LFR to request a deletion (as its siblings must also be deleted by the parent [plot] object). --- dgp/gui/plotting/helpers.py | 53 ++++++++++++++++------------------- dgp/gui/plotting/plotters.py | 9 ++++-- dgp/gui/workspaces/PlotTab.py | 4 +-- tests/test_plots.py | 12 +++++--- 4 files changed, 40 insertions(+), 38 deletions(-) diff --git a/dgp/gui/plotting/helpers.py b/dgp/gui/plotting/helpers.py index d517d9b..910f9e6 100644 --- a/dgp/gui/plotting/helpers.py +++ b/dgp/gui/plotting/helpers.py @@ -142,15 +142,14 @@ def __init__(self, values=(0, 1), orientation=None, brush=None, self.parent = parent self._grpid = None - self._label_text = label or '' - self.label = TextItem(text=self._label_text, color=(0, 0, 0), - anchor=(0, 0)) + self._label = TextItem(text=label or '', color=(0, 0, 0), + anchor=(0, 0)) self._label_y = 0 - self._move_label(self) + self._update_label_pos() self._menu = QMenu() - self._menu.addAction('Remove', self._remove) - self._menu.addAction('Set Label', self._getlabel) - self.sigRegionChanged.connect(self._move_label) + self._menu.addAction('Remove', lambda: self.sigDeleteRequested.emit(self)) + self._menu.addAction('Set Label', self._get_label_dlg) + self.sigRegionChanged.connect(self._update_label_pos) @property def group(self): @@ -160,6 +159,16 @@ def group(self): def group(self, value): self._grpid = value + @property + def label(self) -> str: + return self._label.textItem.toPlainText() + + @label.setter + def label(self, value: str) -> None: + """Set the label text, limiting input to 10 characters""" + self._label.setText(value[:10]) + self._update_label_pos() + def mouseClickEvent(self, ev: MouseClickEvent): if not self.parent.selection_mode: return @@ -171,26 +180,17 @@ def mouseClickEvent(self, ev: MouseClickEvent): else: return super().mouseClickEvent(ev) - def _move_label(self, lfr): + def _update_label_pos(self): x0, x1 = self.getRegion() cx = x0 + (x1 - x0) / 2 - self.label.setPos(cx, self.label.pos()[1]) + self._label.setPos(cx, self._label.pos()[1]) - def _remove(self): - try: - self.parent.remove_segment(self) - except AttributeError: - return - - def _getlabel(self): - text, result = QInputDialog.getText(None, "Enter Label", "Line Label:", - text=self._label_text) + def _get_label_dlg(self): # pragma: no cover + text, result = QInputDialog.getText(self.parent, "Enter Label", + "Line Label:", text=self.label) if not result: return - try: - self.parent.set_label(self, str(text).strip()) - except AttributeError: - return + self.sigLabelChanged.emit(self, str(text).strip()) def y_changed(self, vb, ylims): """pyqtSlot (ViewBox, Tuple[Float, Float]) @@ -198,13 +198,8 @@ def y_changed(self, vb, ylims): Y-Limits have changed """ - x = self.label.pos()[0] + x = self._label.pos()[0] y = ylims[0] + (ylims[1] - ylims[0]) / 2 - self.label.setPos(x, y) - - def set_label(self, text): - self._label_text = text[:10] - self.label.setText(self._label_text) - self._move_label(self) + self._label.setPos(x, y) # TODO: Add dialog action to manually adjust left/right bounds diff --git a/dgp/gui/plotting/plotters.py b/dgp/gui/plotting/plotters.py index 8de3a30..a8580e8 100644 --- a/dgp/gui/plotting/plotters.py +++ b/dgp/gui/plotting/plotters.py @@ -116,10 +116,12 @@ def add_segment(self, start: float, stop: float, label: str = None, lfr = LinearFlightRegion(parent=self, label=label) lfr.group = grpid plot.addItem(lfr) - plot.addItem(lfr.label) + plot.addItem(lfr._label) lfr.setRegion(patch_region) lfr.setMovable(self._selecting) lfr.sigRegionChanged.connect(self._update_segments) + lfr.sigLabelChanged.connect(self.set_label) + lfr.sigDeleteRequested.connect(self.remove_segment) plot.sigYRangeChanged.connect(lfr.y_changed) lfr_group.append(lfr) @@ -150,17 +152,18 @@ def remove_segment(self, item: LinearFlightRegion): plot.sigYRangeChanged.disconnect(lfr.y_changed) except TypeError: # pragma: no cover pass - plot.removeItem(lfr.label) + plot.removeItem(lfr._label) plot.removeItem(lfr) del self._segments[grpid] self.sigSegmentChanged.emit(update) def set_label(self, item: LinearFlightRegion, text: str): + """Set the text label of every LFR in the same group as item""" if not isinstance(item, LinearFlightRegion): raise TypeError(f'Item must be of type LinearFlightRegion') group = self._segments[item.group] for lfr in group: # type: LinearFlightRegion - lfr.set_label(text) + lfr.label = text x0, x1 = item.getRegion() update = LineUpdate(StateAction.UPDATE, item.group, diff --git a/dgp/gui/workspaces/PlotTab.py b/dgp/gui/workspaces/PlotTab.py index e543319..d69a6f4 100644 --- a/dgp/gui/workspaces/PlotTab.py +++ b/dgp/gui/workspaces/PlotTab.py @@ -105,10 +105,10 @@ def _channel_removed(self, item: QStandardItem): self._plot.remove_series(*index) def _clear_plot(self): - self.plot.clear() + self._plot.clear() def _toggle_selection(self, state: bool): - self.plot.selection_mode = state + self._plot.selection_mode = state if state: self._ql_mode.setText("

Line Selection Active

") else: diff --git a/tests/test_plots.py b/tests/test_plots.py index 8920cd6..bab8237 100644 --- a/tests/test_plots.py +++ b/tests/test_plots.py @@ -439,16 +439,16 @@ def test_LineSelectPlot_set_label(gravity: pd.Series): segment1 = segment_grp[1] assert isinstance(segment0, LinearFlightRegion) - assert '' == segment0.label.textItem.toPlainText() - assert '' == segment0._label_text + assert '' == segment0._label.textItem.toPlainText() + assert '' == segment0.label _label = 'Flight-1' plot.set_label(segment0, _label) assert 2 == len(update_spy) update = update_spy[1][0] assert _label == update.label - assert _label == segment0.label.textItem.toPlainText() - assert _label == segment1.label.textItem.toPlainText() + assert _label == segment0._label.textItem.toPlainText() + assert _label == segment1._label.textItem.toPlainText() with pytest.raises(TypeError): plot.set_label(uid, 'Fail') @@ -473,3 +473,7 @@ def test_LineSelectPlot_check_proximity(gravdata): assert not plot._check_proximity(xpos, span, proximity=0.2) xpos = gravdata.index[4].value assert plot._check_proximity(xpos, span, proximity=0.2) + + +def test_LineSelectPlot_clear(): + pass From 566912dba934793bfbc1fcfa456be6543be388ab Mon Sep 17 00:00:00 2001 From: Zachery Brady Date: Thu, 2 Aug 2018 15:23:47 -0600 Subject: [PATCH 190/236] Transform Workspace improvements. Added mode selection to Transform Tab - this allows the user to plot transformation results as a single line, or when toggled to break the resultant series into segments defined by the user in the line selection plot. Add experimental method to view the source-code for the current TransformGraph function. This extracts the __init__ source code from the graph sub-class, and displays it within a QTextEdit. If the Pygments library is installed the source will also be highlighted. --- dgp/core/controllers/dataset_controller.py | 14 +- dgp/gui/ui/transform_tab_widget.ui | 81 +++------- dgp/gui/workspaces/TransformTab.py | 166 +++++++++++++-------- tests/test_workspaces.py | 19 ++- 4 files changed, 149 insertions(+), 131 deletions(-) diff --git a/dgp/core/controllers/dataset_controller.py b/dgp/core/controllers/dataset_controller.py index e9439af..cf0b793 100644 --- a/dgp/core/controllers/dataset_controller.py +++ b/dgp/core/controllers/dataset_controller.py @@ -3,7 +3,7 @@ from pathlib import Path from typing import List, Union -from pandas import DataFrame, concat +from pandas import DataFrame, Timestamp, concat from PyQt5.QtCore import Qt from PyQt5.QtGui import QColor, QBrush, QIcon, QStandardItemModel, QStandardItem @@ -53,11 +53,11 @@ def clone(self) -> 'DataSegmentController': class DataSetController(IDataSetController): def __init__(self, dataset: DataSet, flight: IFlightController): super().__init__() - self.log = logging.getLogger(__name__) self._dataset = dataset self._flight: IFlightController = flight self._project = self._flight.project self._active = False + self.log = logging.getLogger(__name__) self.setEditable(False) self.setText(self._dataset.name) @@ -148,8 +148,8 @@ def gravity(self) -> Union[DataFrame]: return self._gravity try: self._gravity = HDF5Manager.load_data(self._dataset.gravity, self.hdfpath) - except Exception as e: - pass + except Exception: + self.log.exception(f'Exception loading gravity from HDF') finally: return self._gravity @@ -161,8 +161,8 @@ def trajectory(self) -> Union[DataFrame, None]: return self._trajectory try: self._trajectory = HDF5Manager.load_data(self._dataset.trajectory, self.hdfpath) - except Exception as e: - pass + except Exception: + self.log.exception(f'Exception loading trajectory data from HDF') finally: return self._trajectory @@ -275,5 +275,5 @@ def _set_name(self): self.set_attr('name', name) def _set_sensor_dlg(self): - + # TODO: Dialog to enable selection of sensor assoc with the dataset pass diff --git a/dgp/gui/ui/transform_tab_widget.ui b/dgp/gui/ui/transform_tab_widget.ui index 47bb9a7..e56a21b 100644 --- a/dgp/gui/ui/transform_tab_widget.ui +++ b/dgp/gui/ui/transform_tab_widget.ui @@ -55,12 +55,19 @@ - + + + + + + + Execute transform graph + Transform @@ -120,69 +127,13 @@ - - - - Segment: - - - - - - 3 + + + Toggle segment mode to plot by data-segments - - - - false - - - - 0 - 0 - - - - - - - - false - - - - 0 - 0 - - - - Set - - - - - - - false - - - - 0 - 0 - - - - Clear - - - - - - - - Stack Lines + Segment Mode true @@ -195,9 +146,13 @@ - Details + Graph Source - + + + + + diff --git a/dgp/gui/workspaces/TransformTab.py b/dgp/gui/workspaces/TransformTab.py index 389fba8..fceeb02 100644 --- a/dgp/gui/workspaces/TransformTab.py +++ b/dgp/gui/workspaces/TransformTab.py @@ -1,13 +1,14 @@ # -*- coding: utf-8 -*- import logging +import inspect from enum import Enum, auto from typing import List import pandas as pd from PyQt5.QtCore import Qt, pyqtSignal, pyqtSlot from PyQt5.QtGui import QStandardItemModel, QStandardItem -from PyQt5.QtWidgets import QVBoxLayout, QWidget +from PyQt5.QtWidgets import QVBoxLayout, QWidget, QInputDialog, QTextEdit from dgp.core import AxisFormatter from dgp.core.controllers.dataset_controller import DataSegmentController, DataSetController @@ -17,6 +18,19 @@ from . import TaskTab from ..ui.transform_tab_widget import Ui_TransformInterface +try: + from pygments import highlight + from pygments.lexers import PythonLexer + from pygments.formatters import HtmlFormatter + HAS_HIGHLIGHTER = True +except ImportError: + HAS_HIGHLIGHTER = False + + +class _Mode(Enum): + NORMAL = auto() + SEGMENTS = auto() + class TransformWidget(QWidget, Ui_TransformInterface): result = pyqtSignal() @@ -33,6 +47,8 @@ def __init__(self, flight: FlightController): self._flight = flight self._dataset: DataSetController = flight.active_child self._plot = TransformPlot() + self._mode = _Mode.NORMAL + self._segment_indexes = {} self._result: pd.DataFrame = None self.result.connect(self._on_result) @@ -44,15 +60,15 @@ def __init__(self, flight: FlightController): self.plot_index = QStandardItemModel() self.transform_graphs = QStandardItemModel() # Set ComboBox Models - self.qcb_mask.setModel(self._dataset.segment_model) self.qcb_plot_index.setModel(self.plot_index) self.qcb_transform_graphs.setModel(self.transform_graphs) + self.qcb_transform_graphs.currentIndexChanged.connect(self._graph_source) self.qcb_plot_index.currentIndexChanged[int].connect(self._index_changed) # Initialize model for transformed channels self._channel_model = QStandardItemModel() - self._channel_model.itemChanged.connect(self._update_channel_selection) + self._channel_model.itemChanged.connect(self._channel_state_changed) self.qlv_channels.setModel(self._channel_model) self._index_map = { @@ -75,12 +91,16 @@ def __init__(self, flight: FlightController): self.qpb_execute_transform.clicked.connect(self.execute_transform) self.qpb_select_all.clicked.connect(lambda: self._set_all_channels(Qt.Checked)) self.qpb_select_none.clicked.connect(lambda: self._set_all_channels(Qt.Unchecked)) - self.qtb_set_mask.clicked.connect(self._set_mask) - self.qtb_clear_mask.clicked.connect(self._clear_mask) - self.qpb_stack_lines.clicked.connect(self._stack_lines) + self.qpb_toggle_mode.clicked.connect(self._mode_toggled) + self.qte_source_browser.setReadOnly(True) + self.qte_source_browser.setLineWrapMode(QTextEdit.NoWrap) self.hlayout.addWidget(self._plot, Qt.AlignLeft | Qt.AlignTop) + @property + def xaxis_index(self) -> int: + return self.qcb_plot_index.currentData(Qt.UserRole) + @property def raw_gravity(self) -> pd.DataFrame: return self._dataset.gravity @@ -93,6 +113,10 @@ def raw_trajectory(self) -> pd.DataFrame: def dataframe(self) -> pd.DataFrame: return self._dataset.dataframe() + @property + def transform(self) -> TransformGraph: + return self.qcb_transform_graphs.currentData(Qt.UserRole) + @property def _channels(self) -> List[QStandardItem]: return [self._channel_model.item(i) @@ -103,78 +127,91 @@ def _segments(self) -> List[DataSegmentController]: return [self._dataset.segment_model.item(i) for i in range(self._dataset.segment_model.rowCount())] - def _view_transform_graph(self): - """Print out the dictionary transform (or even the raw code) in GUI?""" - pass + def _graph_source(self, index): # pragma: no cover + """Utility to display the transform graph source (__init__) method + containing the definition for the graph. - def _set_mask(self): - # TODO: Decide whether this is useful to allow viewing of a single line - # segment - pass + If Pygments is available the source code will be highlighted - def _clear_mask(self): - pass + Notes + ----- + The inspection of the source code is somewhat fragile and dependent on + the way the graph is defined in the source. The current method gets the + __init__ source code for the TransformGraph descendant then searches for + the string index of 'self.transform_graph', and takes from the first '{' + until the first '}'. - def _split_by_segment(self, segments: List[DataSegmentController], series): - - pass - - def _stack_lines(self): - """Experimental feature, currently works to plot only FAC vs Lon - - TODO: Maybe make stacked lines a toggleable mode - TODO: Need to be more general and work on all transforms/channels """ - if self._result is None: - self.log.warning(f'Transform result not yet computed') - return - - channels = [] - for channel in self._channels: - if channel.checkState() == Qt.Checked: - channels.append(channel) - # channel.setCheckState(Qt.Unchecked) - if not len(channels): - self.log.error("No channel selected.") - return - - # series = channels.pop() - # TODO: Make this a class property - xindex = self.qcb_plot_index.currentData(Qt.UserRole) - - for segment in self._segments: - start = segment.get_attr('start') - stop = segment.get_attr('stop') - start_idx = self._result.index.searchsorted(start) - stop_idx = self._result.index.searchsorted(stop) - self.log.debug(f'Start idx {start_idx} stop idx {stop_idx}') - - for channel in channels: - # Stack only a single channel for the moment - segment_series = channel.data(xindex).iloc[start_idx:stop_idx] - segment_series.name = f'{channel.text()} - {segment.get_attr("sequence")}' - self.plot.add_series(segment_series) + graph = self.transform + src = inspect.getsource(graph.__init__) + start_str = 'self.transform_graph' + start_i = src.find('{', src.find(start_str)) + 1 + src = src[start_i:src.find('}')] + trimmed = map(lambda x: x.lstrip(' '), src.split('\n')) + src = '' + for line in trimmed: + src += f'{line}\n' + + if HAS_HIGHLIGHTER: + css = HtmlFormatter().get_style_defs('.highlight') + style_block = f'' + html = highlight(src, PythonLexer(stripall=True), HtmlFormatter()) + self.qte_source_browser.setHtml(f'{style_block}{html}') + else: + self.qte_source_browser.setText(src) - self._auto_range() + def _mode_toggled(self): + """Toggle the mode state between Normal or Segments""" + self._set_all_channels(state=Qt.Unchecked) + if self._mode is _Mode.NORMAL: + self._mode = _Mode.SEGMENTS + else: + self._mode = _Mode.NORMAL + self.log.debug(f'Changed mode to {self._mode}') + return def _set_all_channels(self, state=Qt.Checked): for i in range(self._channel_model.rowCount()): self._channel_model.item(i).setCheckState(state) - def _update_channel_selection(self, item: QStandardItem): - xindex = self.qcb_plot_index.currentData(Qt.UserRole) - data = item.data(xindex) + def _add_series(self, series: pd.Series, row=0): + if self._mode is _Mode.NORMAL: + self._plot.add_series(series, row) + elif self._mode is _Mode.SEGMENTS: + self._segment_indexes[series.name] = [] + for i, segment in enumerate(self._segments): + start_i = self._result.index.searchsorted(segment.get_attr('start')) + stop_i = self._result.index.searchsorted(segment.get_attr('stop')) + seg_data = series.iloc[start_i:stop_i] + + seg_data.name = f'{series.name}-{segment.get_attr("label") or i}' + self._segment_indexes[series.name].append(seg_data.name) + self._plot.add_series(seg_data, row=0) + + def _remove_series(self, series: pd.Series): + if self._mode is _Mode.NORMAL: + self._plot.remove_series(series.name, row=0) + elif self._mode is _Mode.SEGMENTS: + for name in self._segment_indexes[series.name]: + self._plot.remove_series(name, row=0) + del self._segment_indexes[series.name] + + def _channel_state_changed(self, item: QStandardItem): + data: pd.Series = item.data(self.xaxis_index) if item.checkState() == Qt.Checked: - self.plot.add_series(data) + self._add_series(data, row=0) else: - self.plot.remove_series(data) - self._auto_range() + self._remove_series(data) @pyqtSlot(int, name='_index_changed') def _index_changed(self, index: int): self.log.debug(f'X-Axis changed to {self.qcb_plot_index.currentText()}') if self._result is None: return + if self.xaxis_index in {self.LATITUDE, self.LONGITUDE}: + self._plot.set_axis_formatters(AxisFormatter.SCALAR) + else: + self._plot.set_axis_formatters(AxisFormatter.DATETIME) for channel in self._channels: if channel.checkState() == Qt.Checked: @@ -183,12 +220,20 @@ def _index_changed(self, index: int): @pyqtSlot(name='_on_result') def _on_result(self): + """_on_result called when Transformation DataFrame has been computed. + + This method creates the channel objects for the interface. + """ default_channels = ['fac'] time_df = self._result lat_df = time_df.set_index('lat') lon_df = time_df.set_index('lon') + for i in range(self._channel_model.rowCount()): + item = self._channel_model.item(i) + del item + self._channel_model.clear() for col in sorted(time_df.columns): item = QStandardItem(col) @@ -218,6 +263,7 @@ def execute_transform(self): graph = transform(trajectory, gravity, 0, 0) self.log.info("Executing graph") graph.execute() + del self._result self._result = graph.result_df() self.result.emit() diff --git a/tests/test_workspaces.py b/tests/test_workspaces.py index 7178870..14a6bc7 100644 --- a/tests/test_workspaces.py +++ b/tests/test_workspaces.py @@ -9,6 +9,7 @@ from dgp.core.models.project import AirborneProject from dgp.core.controllers.project_controllers import AirborneProjectController from dgp.gui.workspaces import PlotTab +from dgp.gui.workspaces.TransformTab import TransformWidget, _Mode def test_plot_tab_init(project: AirborneProject): @@ -19,4 +20,20 @@ def test_plot_tab_init(project: AirborneProject): assert ds_ctrl == flt1_ctrl.active_child assert pd.DataFrame().equals(ds_ctrl.dataframe()) - tab = PlotTab("TestTab", flt1_ctrl) + ptab = PlotTab("TestTab", flt1_ctrl) + + +def test_TransformTab_modes(prj_ctrl, flt_ctrl, gravdata): + ttab = TransformWidget(flt_ctrl) + + assert ttab._mode is _Mode.NORMAL + ttab.qpb_toggle_mode.click() + assert ttab._mode is _Mode.SEGMENTS + ttab.qpb_toggle_mode.click() + assert ttab._mode is _Mode.NORMAL + + assert 0 == len(ttab._plot.get_plot(0).curves) + ttab._add_series(gravdata['gravity']) + assert 1 == len(ttab._plot.get_plot(0).curves) + ttab._remove_series(gravdata['gravity']) + assert 0 == len(ttab._plot.get_plot(0).curves) From 4ccd20ea4f03e5a0a160c565c44f2a98102d025d Mon Sep 17 00:00:00 2001 From: Zachery Brady Date: Fri, 3 Aug 2018 12:54:33 -0600 Subject: [PATCH 191/236] Tests: Qt/pytest Error handling improvements Changed pytest run command to disable stdout/stderr capture on travis CI build. This was an issue when the test encounters a critical error (causing the Python interpreter to crash), resulting in the loss of any useful capture information. Added new Qt error message handler in the pytest conftest file to capture and print to stderr any QFatal/QCritical calls. Added pytest-faulthandler module to test-requirements which will print out a call trace in the event of even a fatal Python error. Fix enumeration references after refactoring. --- .travis.yml | 4 ++-- dgp/core/__init__.py | 4 ++-- dgp/core/types/enumerations.py | 2 +- test-requirements.txt | 1 + tests/conftest.py | 17 ++++++++++++++++- 5 files changed, 22 insertions(+), 6 deletions(-) diff --git a/.travis.yml b/.travis.yml index feb56c9..5649474 100644 --- a/.travis.yml +++ b/.travis.yml @@ -13,9 +13,9 @@ before_script: - "export DISPLAY=:99.0" - "sh -e /etc/init.d/xvfb start" - sleep 3 - - python utils/build_uic.py dgp/gui/ui + - python utils/build_uic.py script: - pytest --cov=dgp tests + pytest --capture=no --cov=dgp tests after_success: - coveralls notifications: diff --git a/dgp/core/__init__.py b/dgp/core/__init__.py index 14c743f..d5f704f 100644 --- a/dgp/core/__init__.py +++ b/dgp/core/__init__.py @@ -1,7 +1,7 @@ # -*- coding: utf-8 -*- -__all__ = ['OID', 'Reference', 'DataType', 'Icon'] +__all__ = ['OID', 'Reference', 'StateAction'] from .oid import OID from .types.reference import Reference -from .types.enumerations import DataType, Icon, MeterTypes, GravityTypes +from .types.enumerations import * diff --git a/dgp/core/types/enumerations.py b/dgp/core/types/enumerations.py index 3fb9c71..390d9d9 100644 --- a/dgp/core/types/enumerations.py +++ b/dgp/core/types/enumerations.py @@ -5,7 +5,7 @@ from enum import auto __all__ = ['AxisFormatter', 'StateAction', 'StateColor', 'Icon', 'ProjectTypes', - 'MeterTypes', 'DataTypes'] + 'MeterTypes', 'DataType'] LOG_LEVEL_MAP = {'debug': logging.DEBUG, 'info': logging.INFO, 'warning': logging.WARNING, 'error': logging.ERROR, diff --git a/test-requirements.txt b/test-requirements.txt index fdce606..e529836 100644 --- a/test-requirements.txt +++ b/test-requirements.txt @@ -1,4 +1,5 @@ pytest>=3.6.1 coverage>=4.4.1 pytest-cov>=2.5.1 +pytest-faulthandler==1.5.0 coveralls diff --git a/tests/conftest.py b/tests/conftest.py index 8ff21c3..a31cd5c 100644 --- a/tests/conftest.py +++ b/tests/conftest.py @@ -37,6 +37,21 @@ """ +def qt_msg_handler(type_, context, message: str): + level = { + QtCore.QtDebugMsg: "QtDebug", + QtCore.QtWarningMsg: "QtWarning", + QtCore.QtCriticalMsg: "QtCritical", + QtCore.QtFatalMsg: "QtFatal", + QtCore.QtInfoMsg: "QtInfo" + }.get(type_, "QtDebug") + if type_ >= QtCore.QtCriticalMsg: + print(f'QtMessage: {level} {message}', file=sys.stderr) + + +QtCore.qInstallMessageHandler(qt_msg_handler) + + def excepthook(type_, value, traceback_): """This allows IDE to properly display unhandled exceptions which are otherwise silently ignored as the application is terminated. @@ -52,7 +67,7 @@ def excepthook(type_, value, traceback_): QtCore.qFatal('') -sys.excepthook = excepthook +# sys.excepthook = excepthook APP = QApplication([]) From 54dc1393b557d3c2524bb91df7f17ec8a62c2051 Mon Sep 17 00:00:00 2001 From: Zachery Brady Date: Thu, 9 Aug 2018 14:17:13 -0600 Subject: [PATCH 192/236] Refactor AxisFormatter and LineraFlightRegion Move AxisFormatter enum into plotting/backends Rename LinearFlightRegion to LinearSegment Change slot y_changed to y_rng_changed in LinearSegment --- dgp/core/types/enumerations.py | 7 +--- dgp/gui/plotting/backends.py | 10 ++++-- dgp/gui/plotting/helpers.py | 23 ++++++------- dgp/gui/plotting/plotters.py | 54 +++++++++++++++--------------- dgp/gui/workspaces/TransformTab.py | 3 +- docs/source/gui/plotting.rst | 2 +- tests/test_plots.py | 9 +++-- 7 files changed, 52 insertions(+), 56 deletions(-) diff --git a/dgp/core/types/enumerations.py b/dgp/core/types/enumerations.py index 390d9d9..4aa7632 100644 --- a/dgp/core/types/enumerations.py +++ b/dgp/core/types/enumerations.py @@ -4,7 +4,7 @@ import logging from enum import auto -__all__ = ['AxisFormatter', 'StateAction', 'StateColor', 'Icon', 'ProjectTypes', +__all__ = ['StateAction', 'StateColor', 'Icon', 'ProjectTypes', 'MeterTypes', 'DataType'] LOG_LEVEL_MAP = {'debug': logging.DEBUG, 'info': logging.INFO, @@ -12,11 +12,6 @@ 'critical': logging.CRITICAL} -class AxisFormatter(enum.Enum): - DATETIME = auto() - SCALAR = auto() - - class StateAction(enum.Enum): CREATE = auto() UPDATE = auto() diff --git a/dgp/gui/plotting/backends.py b/dgp/gui/plotting/backends.py index e158e3a..8e1d2c7 100644 --- a/dgp/gui/plotting/backends.py +++ b/dgp/gui/plotting/backends.py @@ -9,10 +9,15 @@ from pyqtgraph.graphicsItems.PlotItem import PlotItem from pyqtgraph import SignalProxy, PlotDataItem -from dgp.core import AxisFormatter from .helpers import PolyAxis -__all__ = ['GridPlotWidget'] + +__all__ = ['GridPlotWidget', 'Axis', 'AxisFormatter'] + + +class AxisFormatter(Enum): + DATETIME = auto() + SCALAR = auto() class Axis(Enum): @@ -87,7 +92,6 @@ class aims to simplify the API for our use cases, and add functionality for :func:`pyqtgraph.functions.mkColor` for color options in the plot (creates a QtGui.QColor) """ - def __init__(self, rows=1, cols=1, background='w', grid=True, sharex=False, multiy=False, timeaxis=False, parent=None): super().__init__(background=background, parent=parent) diff --git a/dgp/gui/plotting/helpers.py b/dgp/gui/plotting/helpers.py index 910f9e6..ece37d2 100644 --- a/dgp/gui/plotting/helpers.py +++ b/dgp/gui/plotting/helpers.py @@ -123,7 +123,7 @@ def tickStrings(self, values, scale, spacing): # return super().tickSpacing(minVal, maxVal, size) -class LinearFlightRegion(LinearRegionItem): +class LinearSegment(LinearRegionItem): """Custom LinearRegionItem class to provide override methods on various click events. @@ -180,6 +180,16 @@ def mouseClickEvent(self, ev: MouseClickEvent): else: return super().mouseClickEvent(ev) + def y_rng_changed(self, vb, ylims): # pragma: no cover + """pyqtSlot (ViewBox, Tuple[Float, Float]) + Center the label vertically within the ViewBox when the ViewBox + Y-Limits have changed + + """ + x = self._label.pos()[0] + y = ylims[0] + (ylims[1] - ylims[0]) / 2 + self._label.setPos(x, y) + def _update_label_pos(self): x0, x1 = self.getRegion() cx = x0 + (x1 - x0) / 2 @@ -192,14 +202,3 @@ def _get_label_dlg(self): # pragma: no cover return self.sigLabelChanged.emit(self, str(text).strip()) - def y_changed(self, vb, ylims): - """pyqtSlot (ViewBox, Tuple[Float, Float]) - Center the label vertically within the ViewBox when the ViewBox - Y-Limits have changed - - """ - x = self._label.pos()[0] - y = ylims[0] + (ylims[1] - ylims[0]) / 2 - self._label.setPos(x, y) - - # TODO: Add dialog action to manually adjust left/right bounds diff --git a/dgp/gui/plotting/plotters.py b/dgp/gui/plotting/plotters.py index a8580e8..c5fe037 100644 --- a/dgp/gui/plotting/plotters.py +++ b/dgp/gui/plotting/plotters.py @@ -2,18 +2,19 @@ import logging import pandas as pd -import PyQt5.QtCore as QtCore -from PyQt5.QtCore import pyqtSignal -from pyqtgraph import PlotItem, Point +from PyQt5.QtCore import pyqtSignal, Qt, QTimer +from pyqtgraph import Point -from dgp.core import AxisFormatter from dgp.core import StateAction from dgp.core.oid import OID from dgp.core.types.tuples import LineUpdate -from .helpers import LinearFlightRegion -from .backends import GridPlotWidget +from .helpers import LinearSegment +from .backends import GridPlotWidget, AxisFormatter -from pyqtgraph.graphicsItems.LinearRegionItem import LinearRegionItem + +__all__ = ['TransformPlot', 'LineSelectPlot', 'AxisFormatter'] + +_log = logging.getLogger(__name__) """ Task specific Plotting Interface definitions. @@ -24,7 +25,6 @@ a section of interesting data). """ -_log = logging.getLogger(__name__) class TransformPlot(GridPlotWidget): @@ -57,8 +57,8 @@ def __init__(self, rows=1, parent=None): self._updating = False # Rate-limit line updates using a timer. - self._line_update: LinearFlightRegion = None - self._update_timer = QtCore.QTimer(self) + self._line_update: LinearSegment = None + self._update_timer = QTimer(self) self._update_timer.setInterval(100) self._update_timer.timeout.connect(self._update_done) @@ -72,13 +72,13 @@ def selection_mode(self): def selection_mode(self, value): self._selecting = bool(value) for group in self._segments.values(): - for lfr in group: # type: LinearFlightRegion + for lfr in group: # type: LinearSegment lfr.setMovable(value) def add_segment(self, start: float, stop: float, label: str = None, uid: OID = None, emit=True) -> None: """ - Add a LinearFlightRegion selection across all linked x-axes + Add a LinearSegment selection across all linked x-axes With width ranging from start:stop and an optional label. To non-interactively add a segment group (e.g. when loading a saved @@ -113,7 +113,7 @@ def add_segment(self, start: float, stop: float, label: str = None, lfr_group = [] for i, plot in enumerate(self.plots): - lfr = LinearFlightRegion(parent=self, label=label) + lfr = LinearSegment(parent=self, label=label) lfr.group = grpid plot.addItem(lfr) plot.addItem(lfr._label) @@ -122,7 +122,7 @@ def add_segment(self, start: float, stop: float, label: str = None, lfr.sigRegionChanged.connect(self._update_segments) lfr.sigLabelChanged.connect(self.set_label) lfr.sigDeleteRequested.connect(self.remove_segment) - plot.sigYRangeChanged.connect(lfr.y_changed) + plot.sigYRangeChanged.connect(lfr.y_rng_changed) lfr_group.append(lfr) @@ -133,13 +133,13 @@ def add_segment(self, start: float, stop: float, label: str = None, def get_segment(self, uid: OID): return self._segments[uid][0] - def remove_segment(self, item: LinearFlightRegion): + def remove_segment(self, item: LinearSegment): """Remove the segment 'item' and all of its siblings (in the same group) """ - if not isinstance(item, LinearFlightRegion): + if not isinstance(item, LinearSegment): raise TypeError(f'{item!r} is not a valid type. Expected ' - f'LinearFlightRegion') + f'LinearSegment') grpid = item.group x0, x1 = item.getRegion() @@ -147,9 +147,9 @@ def remove_segment(self, item: LinearFlightRegion): pd.to_datetime(x0), pd.to_datetime(x1), None) grp = self._segments[grpid] for i, plot in enumerate(self.plots): - lfr: LinearFlightRegion = grp[i] + lfr: LinearSegment = grp[i] try: - plot.sigYRangeChanged.disconnect(lfr.y_changed) + plot.sigYRangeChanged.disconnect(lfr.y_rng_changed) except TypeError: # pragma: no cover pass plot.removeItem(lfr._label) @@ -157,12 +157,12 @@ def remove_segment(self, item: LinearFlightRegion): del self._segments[grpid] self.sigSegmentChanged.emit(update) - def set_label(self, item: LinearFlightRegion, text: str): + def set_label(self, item: LinearSegment, text: str): """Set the text label of every LFR in the same group as item""" - if not isinstance(item, LinearFlightRegion): - raise TypeError(f'Item must be of type LinearFlightRegion') + if not isinstance(item, LinearSegment): + raise TypeError(f'Item must be of type LinearSegment') group = self._segments[item.group] - for lfr in group: # type: LinearFlightRegion + for lfr in group: # type: LinearSegment lfr.label = text x0, x1 = item.getRegion() @@ -182,10 +182,10 @@ def onclick(self, ev): # pragma: no cover # Avoid error when clicking around plot, due to an attempt to # call mapFromScene on None in pyqtgraph/mouseEvents.py return - if event.button() == QtCore.Qt.RightButton: + if event.button() == Qt.RightButton: return - if event.button() == QtCore.Qt.LeftButton: + if event.button() == Qt.LeftButton: if not self.selection_mode: return p0 = self.get_plot(row=0) @@ -203,7 +203,7 @@ def onclick(self, ev): # pragma: no cover stop = xpos + (vb_span * 0.05) self.add_segment(start, stop) - def _update_segments(self, item: LinearFlightRegion): + def _update_segments(self, item: LinearSegment): """Update other LinearRegionItems in the group of 'item' to match the new region. A flag (_updating) is set here as we only want to process updates from @@ -265,7 +265,7 @@ def _check_proximity(self, x, span, proximity=0.03) -> bool: """ prox = span * proximity for group in self._segments.values(): - lri0 = group[0] # type: LinearRegionItem + lri0 = group[0] # type: LinearSegment lx0, lx1 = lri0.getRegion() if lx0 - prox <= x <= lx1 + prox: print("New point is too close") diff --git a/dgp/gui/workspaces/TransformTab.py b/dgp/gui/workspaces/TransformTab.py index fceeb02..a33956a 100644 --- a/dgp/gui/workspaces/TransformTab.py +++ b/dgp/gui/workspaces/TransformTab.py @@ -10,11 +10,10 @@ from PyQt5.QtGui import QStandardItemModel, QStandardItem from PyQt5.QtWidgets import QVBoxLayout, QWidget, QInputDialog, QTextEdit -from dgp.core import AxisFormatter from dgp.core.controllers.dataset_controller import DataSegmentController, DataSetController from dgp.core.controllers.flight_controller import FlightController from dgp.lib.transform.transform_graphs import SyncGravity, AirbornePost, TransformGraph -from dgp.gui.plotting.plotters import TransformPlot +from dgp.gui.plotting.plotters import TransformPlot, AxisFormatter from . import TaskTab from ..ui.transform_tab_widget import Ui_TransformInterface diff --git a/docs/source/gui/plotting.rst b/docs/source/gui/plotting.rst index 6879d57..4d33892 100644 --- a/docs/source/gui/plotting.rst +++ b/docs/source/gui/plotting.rst @@ -59,6 +59,6 @@ Helpers :undoc-members: :show-inheritance: -.. autoclass:: dgp.gui.plotting.helpers.LinearFlightRegion +.. autoclass:: dgp.gui.plotting.helpers.LinearSegment :undoc-members: :show-inheritance: diff --git a/tests/test_plots.py b/tests/test_plots.py index bab8237..fd22120 100644 --- a/tests/test_plots.py +++ b/tests/test_plots.py @@ -16,12 +16,11 @@ from pyqtgraph import GraphicsLayout, PlotItem, PlotDataItem, LegendItem, Point from pyqtgraph.GraphicsScene.mouseEvents import MouseClickEvent -from dgp.core import AxisFormatter from dgp.core.oid import OID from dgp.core.types.tuples import LineUpdate -from dgp.gui.plotting.backends import GridPlotWidget, Axis +from dgp.gui.plotting.backends import GridPlotWidget, Axis, AxisFormatter from dgp.gui.plotting.plotters import LineSelectPlot -from dgp.gui.plotting.helpers import PolyAxis, LinearFlightRegion +from dgp.gui.plotting.helpers import PolyAxis, LinearSegment @pytest.fixture @@ -344,7 +343,7 @@ def test_LineSelectPlot_selection_mode(): assert 1 == len(plot._segments) for lfr_grp in plot._segments.values(): - for lfr in lfr_grp: # type: LinearFlightRegion + for lfr in lfr_grp: # type: LinearSegment assert lfr.movable plot.selection_mode = False @@ -438,7 +437,7 @@ def test_LineSelectPlot_set_label(gravity: pd.Series): segment0 = segment_grp[0] segment1 = segment_grp[1] - assert isinstance(segment0, LinearFlightRegion) + assert isinstance(segment0, LinearSegment) assert '' == segment0._label.textItem.toPlainText() assert '' == segment0.label From 2c235de2d998a071a1aeae494d72ab7e9f7e9642 Mon Sep 17 00:00:00 2001 From: Zachery Brady Date: Thu, 9 Aug 2018 16:07:20 -0600 Subject: [PATCH 193/236] Add custom DgpPlotItem with enhanced context menu. Create DgpPlotItem as a derivative of pyqtgraph's PlotItem to override the default 'Plot Options' context menu provided by it. The default menu provides many options which are either irrelevant, or cause RuntimeErrors. DgpPlotItem also encapsulates the process of creating a twin plot for the right y-axis, and also enables control of the twin plot (if it is enabled) via the new context menu. Move twin y-axis plot creation into DgpPlotItem, 'right' plot can now be enabled by an init parameter. --- dgp/gui/plotting/backends.py | 274 +++++++++++++++++++++++++----- dgp/gui/plotting/helpers.py | 6 - dgp/gui/plotting/plotters.py | 19 ++- dgp/gui/ui/plot_options_widget.ui | 184 ++++++++++++++++++++ 4 files changed, 431 insertions(+), 52 deletions(-) create mode 100644 dgp/gui/ui/plot_options_widget.ui diff --git a/dgp/gui/plotting/backends.py b/dgp/gui/plotting/backends.py index 8e1d2c7..e2314de 100644 --- a/dgp/gui/plotting/backends.py +++ b/dgp/gui/plotting/backends.py @@ -2,16 +2,18 @@ from enum import Enum, auto from itertools import cycle from typing import List, Union, Tuple, Generator, Dict +from weakref import WeakValueDictionary import pandas as pd +from PyQt5.QtWidgets import QMenu, QWidgetAction, QWidget, QAction from pyqtgraph.widgets.GraphicsView import GraphicsView from pyqtgraph.graphicsItems.GraphicsLayout import GraphicsLayout from pyqtgraph.graphicsItems.PlotItem import PlotItem from pyqtgraph import SignalProxy, PlotDataItem +from dgp.gui.ui.plot_options_widget import Ui_PlotOptions from .helpers import PolyAxis - __all__ = ['GridPlotWidget', 'Axis', 'AxisFormatter'] @@ -25,19 +27,59 @@ class Axis(Enum): RIGHT = 'right' +LINE_COLORS = {'#1f77b4', '#ff7f0e', '#2ca02c', '#d62728', '#9467bd', + '#8c564b', '#e377c2', '#7f7f7f', '#bcbd22', '#17becf'} + + +# type aliases +MaybePlot = Union['DgpPlotItem', None] MaybeSeries = Union[pd.Series, None] PlotIndex = Tuple[str, int, int, Axis] -LINE_COLORS = ['#1f77b4', '#ff7f0e', '#2ca02c', '#d62728', '#9467bd', - '#8c564b', '#e377c2', '#7f7f7f', '#bcbd22', '#17becf'] -class LinkedPlotItem(PlotItem): - """LinkedPlotItem simplifies the creation of a second plot axes linked to - the right axis scale of the base :class:`PlotItem` +class _CustomPlotControl(QWidget, Ui_PlotOptions): + """QWidget used by DgpPlotItem to provide a custom plot-controls menu.""" + def __init__(self, parent=None): + super().__init__() + self.setupUi(self) + self._action = QWidgetAction(parent) + self._action.setDefaultWidget(self) + self.qpbReset.clicked.connect(self.reset_controls) + + def reset_controls(self): + """Reset all controls to a default state/value""" + self.alphaGroup.setChecked(True) + self.alphaSlider.setValue(1000) + self.gridAlphaSlider.setValue(128) + self.xGridCheck.setChecked(True) + self.yGridCheck.setChecked(True) + self.yGridCheckRight.setChecked(False) + self.averageCheck.setChecked(False) + self.downsampleCheck.setChecked(False) + self.downsampleSpin.setValue(1) + + @property + def action(self) -> QWidgetAction: + return self._action + - This class is used by GridPlotWidget to construct plots which have a second - y-scale in order to display two (or potentially more) Series on the same - plot with different amplitudes. +class LinkedPlotItem(PlotItem): + """LinkedPlotItem creates a twin plot linked to the right y-axis of the base + + This class is used by DgpPlotItem to enable plots which have a second + y-axis scale in order to display two (or potentially more) Series on the + same plot with different magnitudes. + + Notes + ----- + This class is a simple wrapper around a base pyqtgraph PlotItem, it sets + some sensible default parameters, and configures itself to link its x-axis + to the specified 'base' PlotItem, and finally inserts itself into the layout + container of the parent plot. + Also note that the linked plot does not use its own independent legend, + it links its legend attribute to the base plot's legend (so that legend + add/remove actions can be performed without validating the specific plot + reference). """ def __init__(self, base: PlotItem): @@ -49,6 +91,7 @@ def __init__(self, base: PlotItem): self.hideAxis('left') self.hideAxis('bottom') self.setZValue(-100) + self.setLimits(maxYRange=1e17, maxXRange=1e17) base.showAxis('right') base.getAxis('right').setGrid(False) @@ -56,6 +99,165 @@ def __init__(self, base: PlotItem): base.layout.addItem(self, 2, 1) +class DgpPlotItem(PlotItem): + """Custom PlotItem derived from pyqtgraph's :class:`PlotItem` + + The primary focus of this custom PlotItem is to override the default + 'Plot Options' sub-menu provided by PlotItem for context-menu (right-click) + events on the plot surface. + Secondarily this class provides a simple way to create/enable a secondary + y-axis, for plotting multiple data curves of differing magnitudes. + + Many of the menu actions defined by the original PlotItem class do not work + correctly (or generate RuntimeErrors) when dealing with typical DataFrames + in our context. The original menu is also heavily nested, and provides many + functions which are currently unnecessary for our use-case. + + The custom Plot Options menu provided by this class is a single frame + pop-out context menu, providing the functions/actions described in the notes + below. + + Parameters + ---------- + multiy : bool, optional + If True the plot item will be created with multiple y-axis scales. + Curves can be plotted to the second (right axis) plot using the 'right' + property + kwargs + See valid parameters for :class:`PlotItem` + + Notes + ----- + Custom menu functionality provided: + - Plot curve alpha (transparency) setting + - Grid line visibility (on/off/transparency) + - Average curve (on/off) + - Downsampling/decimation - selectable data-decimation by step (2 to 10) + + """ + ctrl_overrides = ('alphaSlider', 'alphaGroup', 'gridAlphaSlider', + 'xGridCheck', 'yGridCheck', 'downsampleCheck', + 'downsampleSpin') + + def __init__(self, multiy: bool = False, **kwargs): + super().__init__(**kwargs) + self.setLimits(maxYRange=1e17, maxXRange=1e17) + self.setYRange(-1, 1) + self.addLegend(offset=(15, 15)) + + self.customControl = _CustomPlotControl() + self.ctrlMenu = QMenu("Plot Options") + self.ctrlMenu.addAction(self.customControl.action) + + # Ensure default state in original ui ctrl + self.ctrl.alphaGroup.setChecked(True) + self.ctrl.autoAlphaCheck.setChecked(False) + + # Set signal connections for custom controls + self.customControl.alphaGroup.toggled.connect(self.updateAlpha) + self.customControl.alphaSlider.valueChanged.connect(self.updateAlpha) + self.customControl.gridAlphaSlider.valueChanged.connect(self.updateGrid) + self.customControl.xGridCheck.toggled.connect(self.updateGrid) + self.customControl.yGridCheck.toggled.connect(self.updateGrid) + self.customControl.yGridCheckRight.toggled.connect(self.updateGrid) + self.customControl.averageCheck.toggled.connect(self.ctrl.averageGroup.setChecked) + self.customControl.downsampleCheck.toggled.connect(self.updateDownsampling) + self.customControl.downsampleSpin.valueChanged.connect(self.updateDownsampling) + + # Patch original controls whose state/value is used in various updates + # e.g. PlotItem.updateGrid checks the checked state of x/yGridCheck + # This is done so we don't have to override every base update function + for attr in self.ctrl_overrides: + setattr(self.ctrl, attr, getattr(self.customControl, attr)) + + self.updateGrid() + + self.clearAction = QAction("Clear Plot", self) + self.clearAction.triggered.connect(self.clearPlots) + + # Configure right-y plot (sharing x-axis) + self._right = LinkedPlotItem(self) if multiy else None + + @property + def left(self) -> 'DgpPlotItem': + return self + + @property + def right(self) -> MaybePlot: + """Return the sibling plot linked to the right y-axis (if it exists)""" + return self._right + + def clearPlots(self): + """Override PlotItem::clearPlots + + Clear all curves from left and right plots, as well as removing any + legend entries. + """ + for c in self.curves[:]: + self.legend.removeItem(c.name()) + self.removeItem(c) + self.avgCurves = {} + + if self.right is not None: + for c in self.right.curves[:]: + self.legend.removeItem(c.name()) + self.right.removeItem(c) + + def autoRange(self, *args, **kwargs): + self.vb.autoRange(items=self.curves) + if self.right is not None: + self.right.vb.autoRange(items=self.right.curves) + + def updateAlpha(self, *args): + super().updateAlpha(*args) + if self.right is not None: + alpha, auto_ = self.alphaState() + for c in self.right.curves: + c.setAlpha(alpha**2, auto_) + + def updateDownsampling(self): + """Override PlotItem::updateDownsampling + + Override the base implementation in order to effect updates on the right + plot (if it is enabled). + """ + super().updateDownsampling() + if self.right is not None: + ds, auto_, method = self.downsampleMode() + for c in self.right.curves: + c.setDownsampling(ds, auto_, method) + + def downsampleMode(self): + """Override PlotItem::downsampleMode + + Called by updateDownsampling to get control state. Our custom + implementation does not allow for all of the options that the original + does. + + """ + if self.ctrl.downsampleCheck.isChecked(): + ds = self.ctrl.downsampleSpin.value() + else: + ds = 1 + return ds, False, 'subsample' + + def updateGrid(self, *args): + alpha = self.customControl.gridAlphaSlider.value() + x = alpha if self.customControl.xGridCheck.isChecked() else False + y = alpha if self.customControl.yGridCheck.isChecked() else False + yr = alpha if self.customControl.yGridCheckRight.isChecked() else False + + self.getAxis('bottom').setGrid(x) + self.getAxis('left').setGrid(y) + self.getAxis('right').setGrid(yr) + + def getContextMenus(self, event): + if self.menuEnabled(): + return [self.ctrlMenu, self.clearAction] + else: + return None + + class GridPlotWidget(GraphicsView): """ Base plotting class used to create a group of 1 or more :class:`PlotItem` @@ -86,6 +288,13 @@ class aims to simplify the API for our use cases, and add functionality for single plot surface. parent + Notes + ----- + The GridPlotWidget explicitly disables the :class:`pyqtgraph.GraphicsScene` + 'Export' context menu action, as the export dialog is not fully suitable for + our purposes. Similar functionality may be added to the application later, + but not via the plotting interface. + See Also -------- :func:`pyqtgraph.functions.mkPen` for customizing plot-line pens (creates a QgGui.QPen) @@ -98,6 +307,9 @@ def __init__(self, rows=1, cols=1, background='w', grid=True, sharex=False, self.gl = GraphicsLayout(parent=parent) self.setCentralItem(self.gl) + # Remove the 'Export' option from the scene context menu + self.sceneObj.contextMenu = [] + self.rows = rows self.cols = cols @@ -105,28 +317,20 @@ def __init__(self, rows=1, cols=1, background='w', grid=True, sharex=False, self._pens = cycle([{'color': v, 'width': 1} for v in LINE_COLORS]) self._series = {} # type: Dict[pd.Series: Tuple[str, int, int]] self._items = {} # type: Dict[PlotDataItem: Tuple[str, int, int]] - self._rightaxis = {} # TODO: use plot.setLimits to restrict zoom-out level (prevent OverflowError) col = 0 for row in range(self.rows): axis_items = {'bottom': PolyAxis(orientation='bottom', timeaxis=timeaxis)} - plot: PlotItem = self.gl.addPlot(row=row, col=col, - backround=background, - axisItems=axis_items) + plot = DgpPlotItem(background=background, axisItems=axis_items, + multiy=multiy) + self.gl.addItem(plot, row=row, col=col) plot.clear() - plot.addLegend(offset=(15, 15)) plot.showGrid(x=grid, y=grid) - plot.setYRange(-1, 1) # Prevents overflow when labels are added - plot.setLimits(maxYRange=1e17, maxXRange=1e17) if row > 0 and sharex: plot.setXLink(self.get_plot(0, 0)) - if multiy: - p2 = LinkedPlotItem(plot) - p2.setLimits(maxYRange=1e17, maxXRange=1e17) - self._rightaxis[(row, col)] = p2 self.__signal_proxies = [] @@ -177,7 +381,7 @@ def add_series(self, series: pd.Series, row: int, col: int = 0, item = plot.plot(x=xvals, y=yvals, name=series.name, pen=next(self._pens)) self._items[key] = item if autorange: - self.autorange_plot(row, col) + plot.autoRange() return item def get_series(self, name: str, row, col=0, axis: Axis = Axis.LEFT) -> MaybeSeries: @@ -185,15 +389,15 @@ def get_series(self, name: str, row, col=0, axis: Axis = Axis.LEFT) -> MaybeSeri return self._series.get(idx, None) def remove_series(self, name: str, row: int, col: int = 0, - axis: Axis = Axis.LEFT, autoscale: bool = True) -> None: + axis: Axis = Axis.LEFT, autorange: bool = True) -> None: plot = self.get_plot(row, col, axis) key = self.make_index(name, row, col, axis) plot.removeItem(self._items[key]) plot.legend.removeItem(name) del self._series[key] del self._items[key] - if autoscale: - self.autorange_plot(row, col) + if autorange: + plot.autoRange() def clear(self): for i in range(self.rows): @@ -203,24 +407,16 @@ def clear(self): name = curve.name() plot.removeItem(curve) plot.legend.removeItem(name) - if self._rightaxis: - plot_r = self.get_plot(i, j, axis=Axis.RIGHT) + if plot.right: + plot_r = plot.right for curve in plot_r.curves[:]: - name = curve.name() + plot_r.legend.removeItem(curve.name()) plot_r.removeItem(curve) - plot.legend.removeItem(name) # Legend is only on left - del curve del self._items del self._series self._items = {} self._series = {} - def autorange_plot(self, row: int, col: int = 0): - plot_l = self.get_plot(row, col, axis=Axis.LEFT) - plot_l.autoRange(items=plot_l.curves) - if self._rightaxis: - plot_r = self.get_plot(row, col, axis=Axis.RIGHT) - plot_r.autoRange(items=plot_r.curves) def remove_plotitem(self, item: PlotDataItem) -> None: """Alternative method of removing a line by its :class:`PlotDataItem` @@ -237,9 +433,8 @@ def remove_plotitem(self, item: PlotDataItem) -> None: for plot, index in self.gl.items.items(): if isinstance(plot, PlotItem): # pragma: no branch if item in plot.dataItems: - name = item.name() + plot.legend.removeItem(item.name()) plot.removeItem(item) - plot.legend.removeItem(name) del self._series[self.make_index(name, *index[0])] @@ -285,10 +480,7 @@ def set_xaxis_formatter(self, formatter: AxisFormatter, row: int, col: int = 0): """ plot = self.get_plot(row, col) axis: PolyAxis = plot.getAxis('bottom') - if formatter is AxisFormatter.DATETIME: - axis.timeaxis = True - else: - axis.timeaxis = False + axis.timeaxis = formatter is AxisFormatter.DATETIME def get_xlim(self, row: int, col: int = 0): return self.get_plot(row, col).vb.viewRange()[0] diff --git a/dgp/gui/plotting/helpers.py b/dgp/gui/plotting/helpers.py index ece37d2..4bd0667 100644 --- a/dgp/gui/plotting/helpers.py +++ b/dgp/gui/plotting/helpers.py @@ -1,8 +1,6 @@ # -*- coding: utf-8 -*- import logging -from datetime import datetime -import numpy as np import pandas as pd from PyQt5.QtCore import Qt, QPoint, pyqtSignal @@ -116,11 +114,7 @@ def tickStrings(self, values, scale, spacing): else: # pragma: no cover return super().tickStrings(values, scale, spacing) - # def tickValues(self, minVal, maxVal, size): - # return super().tickValues(minVal, maxVal, size) - # def tickSpacing(self, minVal, maxVal, size): - # return super().tickSpacing(minVal, maxVal, size) class LinearSegment(LinearRegionItem): diff --git a/dgp/gui/plotting/plotters.py b/dgp/gui/plotting/plotters.py index c5fe037..cf6f347 100644 --- a/dgp/gui/plotting/plotters.py +++ b/dgp/gui/plotting/plotters.py @@ -30,12 +30,21 @@ class TransformPlot(GridPlotWidget): """Plot interface used for displaying transformation results. May need to display data plotted against time series or scalar series. - """ - # TODO: Duplication of params? Use kwargs? - def __init__(self, rows=1, cols=1, grid=True, parent=None): - super().__init__(rows=rows, cols=cols, grid=grid, sharex=True, - multiy=False, timeaxis=True, parent=parent) + Parameters + ---------- + kwargs : + Keyword arguments are supplied to the base :class:`GridPlotWidget` + The TransformPlot sets sharex=True, multiy=False and timeaxis=True by + default + + rows : int + cols : int + grid : bool + + """ + def __init__(self, **kwargs): + super().__init__(**kwargs, sharex=True, multiy=False, timeaxis=True) def set_axis_formatters(self, formatter: AxisFormatter): for i in range(self.rows): diff --git a/dgp/gui/ui/plot_options_widget.ui b/dgp/gui/ui/plot_options_widget.ui new file mode 100644 index 0000000..1015d88 --- /dev/null +++ b/dgp/gui/ui/plot_options_widget.ui @@ -0,0 +1,184 @@ + + + PlotOptions + + + + 0 + 0 + 205 + 285 + + + + Form + + + + + + + 0 + 0 + + + + Trace Alpha + + + true + + + + + + 1000 + + + 100 + + + 250 + + + 1000 + + + Qt::Horizontal + + + false + + + false + + + + + + + + + + Grid Visibility + + + + + + 255 + + + 8 + + + 16 + + + 128 + + + Qt::Horizontal + + + + + + + X + + + true + + + + + + + Y (Left) + + + true + + + + + + + Alpha + + + + + + + Y (Right) + + + + + + + + + + Show Average Curve + + + + + + + Down Sampling + + + false + + + true + + + false + + + + + + x + + + 1 + + + 10 + + + 1 + + + 1 + + + + + + + Step + + + + + + + + + + Reset Options + + + + + + + + From e10f1b29890d54330db83a983f5dd32baccd1629 Mon Sep 17 00:00:00 2001 From: Zachery Brady Date: Thu, 9 Aug 2018 16:10:18 -0600 Subject: [PATCH 194/236] Refactor GridPlotWidget to use weak refs. Add docstrings. Refactor GridPlotWidget to use WeakValueDictionaries to maintain weak references to plotted series and plot data items. This obviates the need to explicitly delete keys from both dictionaries when a curve is removed from a plot. Updated types and docstrings for various methods in plotting backends. --- dgp/gui/plotting/backends.py | 94 ++++++++++++++++++++++++------------ tests/test_plots.py | 26 +++++----- 2 files changed, 76 insertions(+), 44 deletions(-) diff --git a/dgp/gui/plotting/backends.py b/dgp/gui/plotting/backends.py index e2314de..a720a25 100644 --- a/dgp/gui/plotting/backends.py +++ b/dgp/gui/plotting/backends.py @@ -315,10 +315,11 @@ def __init__(self, rows=1, cols=1, background='w', grid=True, sharex=False, # Note: increasing pen width can drastically reduce performance self._pens = cycle([{'color': v, 'width': 1} for v in LINE_COLORS]) - self._series = {} # type: Dict[pd.Series: Tuple[str, int, int]] - self._items = {} # type: Dict[PlotDataItem: Tuple[str, int, int]] - # TODO: use plot.setLimits to restrict zoom-out level (prevent OverflowError) + # Maintain weak references to Series/PlotDataItems for lookups + self._series: Dict[PlotIndex: pd.Series] = WeakValueDictionary() + self._items: Dict[PlotIndex: PlotDataItem] = WeakValueDictionary() + col = 0 for row in range(self.rows): axis_items = {'bottom': PolyAxis(orientation='bottom', @@ -334,17 +335,22 @@ def __init__(self, rows=1, cols=1, background='w', grid=True, sharex=False, self.__signal_proxies = [] - def get_plot(self, row: int, col: int = 0, axis: Axis = Axis.LEFT) -> PlotItem: - if axis is Axis.RIGHT: - return self._rightaxis[(row, col)] - else: - return self.gl.getItem(row, col) - @property - def plots(self) -> Generator[PlotItem, None, None]: + def plots(self) -> Generator[DgpPlotItem, None, None]: for i in range(self.rows): yield self.get_plot(i, 0) + @property + def pen(self): + return next(self._pens) + + def get_plot(self, row: int, col: int = 0, axis: Axis = Axis.LEFT) -> MaybePlot: + plot: DgpPlotItem = self.gl.getItem(row, col) + if axis is Axis.RIGHT: + return plot.right + else: + return plot + def add_series(self, series: pd.Series, row: int, col: int = 0, axis: Axis = Axis.LEFT, autorange: bool = True) -> PlotItem: """Add a pandas :class:`pandas.Series` to the plot at the specified @@ -366,19 +372,22 @@ def add_series(self, series: pd.Series, row: int, col: int = 0, ------- PlotItem + Raises + ------ + :exc:`AttributeError` + If the provided axis is invalid for the plot, i.e. axis=Axis.RIGHT + but multiy is not enabled. + """ key = self.make_index(series.name, row, col, axis) - if self.get_series(*key) is not None: + if self._items.get(key, None) is not None: return self._items[key] self._series[key] = series - if axis is Axis.RIGHT: - plot = self._rightaxis.get((row, col), self.get_plot(row, col)) - else: - plot = self.get_plot(row, col) + plot = self.get_plot(row, col, axis) xvals = pd.to_numeric(series.index, errors='coerce') yvals = pd.to_numeric(series.values, errors='coerce') - item = plot.plot(x=xvals, y=yvals, name=series.name, pen=next(self._pens)) + item = plot.plot(x=xvals, y=yvals, name=series.name, pen=self.pen) self._items[key] = item if autorange: plot.autoRange() @@ -390,16 +399,27 @@ def get_series(self, name: str, row, col=0, axis: Axis = Axis.LEFT) -> MaybeSeri def remove_series(self, name: str, row: int, col: int = 0, axis: Axis = Axis.LEFT, autorange: bool = True) -> None: + """Remove a named series from the plot at the specified row/col/axis + + Parameters + ---------- + name : str + row : int + col : int, optional + axis : Axis, optional + autorange : bool, optional + Readjust plot x/y view limits after removing the series + + """ plot = self.get_plot(row, col, axis) key = self.make_index(name, row, col, axis) plot.removeItem(self._items[key]) plot.legend.removeItem(name) - del self._series[key] - del self._items[key] if autorange: plot.autoRange() def clear(self): + """Clear all plot curves from all plots""" for i in range(self.rows): for j in range(self.cols): plot = self.get_plot(i, j) @@ -412,11 +432,6 @@ def clear(self): for curve in plot_r.curves[:]: plot_r.legend.removeItem(curve.name()) plot_r.removeItem(curve) - del self._items - del self._series - self._items = {} - self._series = {} - def remove_plotitem(self, item: PlotDataItem) -> None: """Alternative method of removing a line by its :class:`PlotDataItem` @@ -436,11 +451,9 @@ def remove_plotitem(self, item: PlotDataItem) -> None: plot.legend.removeItem(item.name()) plot.removeItem(item) - del self._series[self.make_index(name, *index[0])] - def find_series(self, name: str) -> List[PlotIndex]: - """Find and return a list of all indexes where a series with - Series.name == name + """Find and return a list of all plot indexes where a series with + 'name' is plotted Parameters ---------- @@ -449,7 +462,7 @@ def find_series(self, name: str) -> List[PlotIndex]: Returns ------- - List + List of PlotIndex List of Series indexes, see :func:`make_index` """ @@ -463,6 +476,7 @@ def find_series(self, name: str) -> List[PlotIndex]: def set_xaxis_formatter(self, formatter: AxisFormatter, row: int, col: int = 0): """Allow setting of the X-Axis tick formatter to display DateTime or scalar values. + This is an explicit call, as opposed to letting the AxisItem infer the axis type due to the possibility of plotting two series with different indexes. This may be revised in future. @@ -482,7 +496,15 @@ def set_xaxis_formatter(self, formatter: AxisFormatter, row: int, col: int = 0): axis: PolyAxis = plot.getAxis('bottom') axis.timeaxis = formatter is AxisFormatter.DATETIME - def get_xlim(self, row: int, col: int = 0): + def get_xlim(self, row: int, col: int = 0) -> Tuple[float, float]: + """Get the x-limits (span) for the plot at row/col + + Returns + ------- + tuple of float, float + Tuple of minimum/maximum x-values (xmin, xmax) + + """ return self.get_plot(row, col).vb.viewRange()[0] def set_xlink(self, linked: bool = True, autorange: bool = False): @@ -523,9 +545,21 @@ def add_onclick_handler(self, slot, ratelimit: int = 60): # pragma: no cover @staticmethod def make_index(name: str, row: int, col: int = 0, axis: Axis = Axis.LEFT) -> PlotIndex: + """Generate an index referring to a specific plot curve + + Plot curves (items) can be uniquely identified within the GridPlotWidget + by their name, and the specific plot which they reside on (row/col/axis) + A plot item can only be plotted once on a given plot, so the index is + guaranteed to be unique for the specific named item. + + Raises + ------ + :exc:`ValueError` + If supplied name is invalid (None or empty string: '') + + """ if axis not in Axis: axis = Axis.LEFT if name is None or name is '': raise ValueError("Cannot create plot index from empty name.") return name.lower(), row, col, axis - diff --git a/tests/test_plots.py b/tests/test_plots.py index fd22120..03af05e 100644 --- a/tests/test_plots.py +++ b/tests/test_plots.py @@ -1,20 +1,13 @@ # -*- coding: utf-8 -*- - -""" -Test/Develop Plots using PyQtGraph for high-performance user-interactive plots -within the application. -""" from datetime import datetime import pytest import numpy as np import pandas as pd -from PyQt5.QtCore import QObject, QEvent, QPointF, Qt -from PyQt5.QtGui import QMouseEvent +from PyQt5.QtCore import QObject from PyQt5.QtTest import QSignalSpy -from PyQt5.QtWidgets import QWidget, QGraphicsScene, QGraphicsSceneMouseEvent -from pyqtgraph import GraphicsLayout, PlotItem, PlotDataItem, LegendItem, Point -from pyqtgraph.GraphicsScene.mouseEvents import MouseClickEvent +from PyQt5.QtWidgets import QWidget +from pyqtgraph import GraphicsLayout, PlotItem, PlotDataItem, LegendItem from dgp.core.oid import OID from dgp.core.types.tuples import LineUpdate @@ -22,6 +15,11 @@ from dgp.gui.plotting.plotters import LineSelectPlot from dgp.gui.plotting.helpers import PolyAxis, LinearSegment +"""Test/Develop Plots using PyQtGraph for high-performance user-interactive +plots within the application. + +""" + @pytest.fixture def gravity(gravdata) -> pd.Series: @@ -77,16 +75,16 @@ def test_GridPlotWidget_add_series(gravity): assert gravity.name in [label.text for _, label in p0.legend.items] # Re-plotting an existing series on the same plot should do nothing - _items_len = len(gpw._items.values()) + _items_len = len(list(gpw._items.values())) gpw.add_series(gravity, row=0) assert 1 == len(p0.dataItems) - assert _items_len == len(gpw._items.values()) + assert _items_len == len(list(gpw._items.values())) # Allow plotting of a duplicate series to a second plot - _items_len = len(gpw._items.values()) + _items_len = len(list(gpw._items.values())) gpw.add_series(gravity, row=1) assert 1 == len(p1.dataItems) - assert _items_len + 1 == len(gpw._items.values()) + assert _items_len + 1 == len(list(gpw._items.values())) # Remove series only by name (assuming it can only ever be plotted once) # or specify which plot to remove it from? From e7e453757a07fc1e5c867bf0098589407691c5d8 Mon Sep 17 00:00:00 2001 From: Zachery Brady Date: Thu, 9 Aug 2018 16:22:59 -0600 Subject: [PATCH 195/236] Add tooltips to plot controls. Fix 'View All' action behavior on multi-Y plots. --- dgp/gui/plotting/backends.py | 4 ++++ dgp/gui/ui/plot_options_widget.ui | 27 +++++++++++++++++++++++++++ 2 files changed, 31 insertions(+) diff --git a/dgp/gui/plotting/backends.py b/dgp/gui/plotting/backends.py index a720a25..8ee9fd1 100644 --- a/dgp/gui/plotting/backends.py +++ b/dgp/gui/plotting/backends.py @@ -175,6 +175,10 @@ def __init__(self, multiy: bool = False, **kwargs): self.clearAction = QAction("Clear Plot", self) self.clearAction.triggered.connect(self.clearPlots) + # Connect the 'View All' action so it autoRanges both (left/right) plots + self.vb.menu.viewAll.triggered.disconnect() + self.vb.menu.viewAll.triggered.connect(self.autoRange) + # Configure right-y plot (sharing x-axis) self._right = LinkedPlotItem(self) if multiy else None diff --git a/dgp/gui/ui/plot_options_widget.ui b/dgp/gui/ui/plot_options_widget.ui index 1015d88..60bc96a 100644 --- a/dgp/gui/ui/plot_options_widget.ui +++ b/dgp/gui/ui/plot_options_widget.ui @@ -22,6 +22,9 @@ 0 + + Enable transparency for plot data curves + Trace Alpha @@ -31,6 +34,9 @@ + + Adjust the alpha (transparency) of the curves on this plot + 1000 @@ -65,6 +71,9 @@ + + Adjust the alpha (transparency) of the grid lines + 255 @@ -84,6 +93,9 @@ + + Show or hide vertical (x-axis) grid-lines + X @@ -94,6 +106,9 @@ + + Show or hide horizontal (y-axis) grid lines for the left y-axis + Y (Left) @@ -111,6 +126,9 @@ + + Show or hide horizontal (y-axis) grid lines for the right y-axis + Y (Right) @@ -121,6 +139,9 @@ + + Compute and display an average curve of all curves displayed on the primary (left) axis. + Show Average Curve @@ -128,6 +149,9 @@ + + Enable down-sampling to visually decimate data (may improve interactive performance) + Down Sampling @@ -172,6 +196,9 @@ + + Reset plot options to their default values. + Reset Options From c24ccdd63c6c466528cb7c600d165fae19d84f9e Mon Sep 17 00:00:00 2001 From: Zachery Brady Date: Mon, 13 Aug 2018 08:45:14 -0600 Subject: [PATCH 196/236] Move LineUpdate named tuple into plotting/helpers. --- dgp/core/types/tuples.py | 7 ------- dgp/gui/plotting/helpers.py | 4 ++++ dgp/gui/plotting/plotters.py | 6 ++---- tests/test_plots.py | 3 +-- 4 files changed, 7 insertions(+), 13 deletions(-) delete mode 100644 dgp/core/types/tuples.py diff --git a/dgp/core/types/tuples.py b/dgp/core/types/tuples.py deleted file mode 100644 index 5a9143e..0000000 --- a/dgp/core/types/tuples.py +++ /dev/null @@ -1,7 +0,0 @@ -# -*- coding: utf-8 -*- - -from collections import namedtuple - -LineUpdate = namedtuple('LineUpdate', ['action', 'uid', 'start', - 'stop', 'label']) - diff --git a/dgp/gui/plotting/helpers.py b/dgp/gui/plotting/helpers.py index 4bd0667..a2901a8 100644 --- a/dgp/gui/plotting/helpers.py +++ b/dgp/gui/plotting/helpers.py @@ -1,5 +1,7 @@ # -*- coding: utf-8 -*- import logging +from collections import namedtuple +from typing import List, Iterable, Tuple import pandas as pd @@ -9,6 +11,8 @@ from pyqtgraph.GraphicsScene.mouseEvents import MouseClickEvent LOG = logging.getLogger(__name__) +LineUpdate = namedtuple('LineUpdate', ['action', 'uid', 'start', 'stop', + 'label']) class PolyAxis(AxisItem): diff --git a/dgp/gui/plotting/plotters.py b/dgp/gui/plotting/plotters.py index cf6f347..b21b542 100644 --- a/dgp/gui/plotting/plotters.py +++ b/dgp/gui/plotting/plotters.py @@ -7,12 +7,10 @@ from dgp.core import StateAction from dgp.core.oid import OID -from dgp.core.types.tuples import LineUpdate -from .helpers import LinearSegment +from .helpers import LinearSegmentGroup, LineUpdate from .backends import GridPlotWidget, AxisFormatter - -__all__ = ['TransformPlot', 'LineSelectPlot', 'AxisFormatter'] +__all__ = ['TransformPlot', 'LineSelectPlot', 'AxisFormatter', 'LineUpdate'] _log = logging.getLogger(__name__) diff --git a/tests/test_plots.py b/tests/test_plots.py index 03af05e..5e3c9a1 100644 --- a/tests/test_plots.py +++ b/tests/test_plots.py @@ -10,10 +10,9 @@ from pyqtgraph import GraphicsLayout, PlotItem, PlotDataItem, LegendItem from dgp.core.oid import OID -from dgp.core.types.tuples import LineUpdate from dgp.gui.plotting.backends import GridPlotWidget, Axis, AxisFormatter from dgp.gui.plotting.plotters import LineSelectPlot -from dgp.gui.plotting.helpers import PolyAxis, LinearSegment +from dgp.gui.plotting.helpers import PolyAxis, LinearSegment, LinearSegmentGroup, LineUpdate """Test/Develop Plots using PyQtGraph for high-performance user-interactive plots within the application. From f67205665fdf2f9fcdabf1defaaa98b670af3582 Mon Sep 17 00:00:00 2001 From: Zachery Brady Date: Mon, 13 Aug 2018 10:04:17 -0600 Subject: [PATCH 197/236] Add LinearSegmentGroup, refactor Line Select Plot logic. Add LinearSegmentGroup class to logically group LinearSegments, and to handle updates/mutations within the group. --- dgp/core/controllers/controller_bases.py | 14 -- dgp/gui/plotting/helpers.py | 249 ++++++++++++++++++----- dgp/gui/plotting/plotters.py | 146 +++---------- tests/test_plots.py | 48 ++--- 4 files changed, 230 insertions(+), 227 deletions(-) delete mode 100644 dgp/core/controllers/controller_bases.py diff --git a/dgp/core/controllers/controller_bases.py b/dgp/core/controllers/controller_bases.py deleted file mode 100644 index 0b22a21..0000000 --- a/dgp/core/controllers/controller_bases.py +++ /dev/null @@ -1,14 +0,0 @@ -# -*- coding: utf-8 -*- -from dgp.core.oid import OID -from dgp.core.controllers.controller_interfaces import IBaseController - - -class BaseController(IBaseController): - @property - def uid(self) -> OID: - raise NotImplementedError - - @property - def datamodel(self) -> object: - raise NotImplementedError - diff --git a/dgp/gui/plotting/helpers.py b/dgp/gui/plotting/helpers.py index a2901a8..805f7fa 100644 --- a/dgp/gui/plotting/helpers.py +++ b/dgp/gui/plotting/helpers.py @@ -1,29 +1,36 @@ # -*- coding: utf-8 -*- import logging +import weakref from collections import namedtuple from typing import List, Iterable, Tuple import pandas as pd -from PyQt5.QtCore import Qt, QPoint, pyqtSignal +from PyQt5.QtCore import Qt, pyqtSignal, QTimer, QObject from PyQt5.QtWidgets import QInputDialog, QMenu -from pyqtgraph import LinearRegionItem, TextItem, AxisItem +from pyqtgraph import LinearRegionItem, TextItem, AxisItem, PlotItem from pyqtgraph.GraphicsScene.mouseEvents import MouseClickEvent -LOG = logging.getLogger(__name__) -LineUpdate = namedtuple('LineUpdate', ['action', 'uid', 'start', 'stop', - 'label']) +from dgp.core import OID, StateAction + +_log = logging.getLogger(__name__) + +LineUpdate = namedtuple('LineUpdate', + ['action', 'uid', 'start', 'stop', 'label']) class PolyAxis(AxisItem): - """Subclass of PyQtGraph :class:`AxisItem` which can display tick strings - for a date/time value, or scalar values. + """AxisItem which can display tick strings formatted for a date/time value, + or as scalar values. Parameters ---------- - orientation : str - timeaxis : bool + orientation : str, optional + timeaxis : bool, optional + Enable the time-axis formatter, default is False kwargs + See :class:`~pyqtgraph.graphicsItems.AxisItem.AxisItem` for allowed + kwargs """ def __init__(self, orientation='bottom', timeaxis=False, **kwargs): @@ -54,7 +61,7 @@ def dateTickStrings(self, values, spacing): List of string labels corresponding to each input value. """ - # Get the first formatter where the scale (sec/min/hour/day etc) is + # Select the first formatter where the scale (sec/min/hour/day etc) is # greater than the range fmt = next((fmt for period, fmt in sorted(self._timescales.items()) if period >= spacing), '%m-%d') @@ -64,7 +71,7 @@ def dateTickStrings(self, values, spacing): try: ts: pd.Timestamp = pd.Timestamp(loc) except (OverflowError, ValueError, OSError): - LOG.exception(f'Exception converting {loc} to date string.') + _log.exception(f'Exception converting {loc} to date string.') labels.append('') continue @@ -74,7 +81,7 @@ def dateTickStrings(self, values, spacing): else: label = ts.strftime(fmt) except ValueError: - LOG.warning("Timestamp conversion out-of-bounds") + _log.warning("Timestamp conversion out-of-bounds") label = 'OoB' labels.append(label) @@ -87,7 +94,6 @@ def tickStrings(self, values, scale, spacing): will selectively provide date formatted strings if :attr:`timeaxis` is True. Otherwise the base method is called to provide the tick strings. - Parameters ---------- values : List @@ -119,84 +125,217 @@ def tickStrings(self, values, scale, spacing): return super().tickStrings(values, scale, spacing) - - class LinearSegment(LinearRegionItem): - """Custom LinearRegionItem class to provide override methods on various - click events. + """Custom LinearRegionItem class used to interactively select data segments. Parameters ---------- - parent : :class:`LineSelectPlot` + plot : :class:`PlotItem` + values : tuple of float, float + Initial left/right values for the segment + uid : :class:`~dgp.core.OID` + label : str, optional """ - sigLabelChanged = pyqtSignal(object, str) + sigLabelChanged = pyqtSignal(str) sigDeleteRequested = pyqtSignal(object) - def __init__(self, values=(0, 1), orientation=None, brush=None, - movable=True, bounds=None, parent=None, label=None): - super().__init__(values=values, orientation=orientation, brush=brush, - movable=movable, bounds=bounds) - - self.parent = parent - self._grpid = None - self._label = TextItem(text=label or '', color=(0, 0, 0), - anchor=(0, 0)) - self._label_y = 0 + def __init__(self, plot: PlotItem, values, label=None, + brush=None, movable=False, bounds=None): + super().__init__(values=values, orientation=LinearRegionItem.Vertical, + brush=brush, movable=movable, bounds=bounds) + self._plot = weakref.ref(plot) + self._label = TextItem(text=label or '', color=(0, 0, 0), anchor=(0, 0)) self._update_label_pos() self._menu = QMenu() self._menu.addAction('Remove', lambda: self.sigDeleteRequested.emit(self)) self._menu.addAction('Set Label', self._get_label_dlg) self.sigRegionChanged.connect(self._update_label_pos) - @property - def group(self): - return self._grpid - - @group.setter - def group(self, value): - self._grpid = value + plot.addItem(self) + plot.addItem(self._label) + plot.sigYRangeChanged.connect(self.y_rng_changed) @property - def label(self) -> str: + def label_text(self) -> str: return self._label.textItem.toPlainText() - @label.setter - def label(self, value: str) -> None: + @label_text.setter + def label_text(self, value: str): """Set the label text, limiting input to 10 characters""" self._label.setText(value[:10]) self._update_label_pos() + def remove(self) -> None: + """Remove this segment from the plot""" + self._plot().removeItem(self._label) + self._plot().removeItem(self) + try: + self._plot().sigYRangeChanged.disconnect(self.y_rng_changed) + except TypeError: + pass + def mouseClickEvent(self, ev: MouseClickEvent): - if not self.parent.selection_mode: + """Intercept right-click on segment to display context menu + + This click handler will check if the segments are editable (movable), + if so, right-clicks will activate a context menu, left-clicks will be + passed to the super-class to handle resizing/moving. + """ + if not self.movable: return elif ev.button() == Qt.RightButton and not self.moving: ev.accept() pos = ev.screenPos().toPoint() - pop_point = QPoint(pos.x(), pos.y()) - self._menu.popup(pop_point) + self._menu.popup(pos) else: return super().mouseClickEvent(ev) def y_rng_changed(self, vb, ylims): # pragma: no cover - """pyqtSlot (ViewBox, Tuple[Float, Float]) - Center the label vertically within the ViewBox when the ViewBox - Y-Limits have changed - - """ + """Update label position on change of ViewBox y-limits""" x = self._label.pos()[0] - y = ylims[0] + (ylims[1] - ylims[0]) / 2 + y = ylims[1] self._label.setPos(x, y) def _update_label_pos(self): - x0, x1 = self.getRegion() - cx = x0 + (x1 - x0) / 2 - self._label.setPos(cx, self._label.pos()[1]) + """Update label position to new segment/view bounds""" + x0, _ = self.getRegion() + _, y1 = self._plot().viewRange()[1] + self._label.setPos(x0, y1) def _get_label_dlg(self): # pragma: no cover - text, result = QInputDialog.getText(self.parent, "Enter Label", - "Line Label:", text=self.label) - if not result: + # TODO: Assign parent or create dialog with Icon + text, result = QInputDialog.getText(None, "Enter Label", "Segment Label:", + text=self.label_text) + if result: + self.sigLabelChanged.emit(str(text).strip()) + + +class LinearSegmentGroup(QObject): + """Container for related LinearSegments which are linked across multiple + plots + + LinearSegmentGroup encapsulates the logic required to create and update a + set of LinearSegment's across a group of plot items. + + Parameters + ---------- + plots : Iterable of :class:`PlotItem` + Iterable object containing plots to add LinearSegments to. Must have at + least 1 item. + group : :class:`~dgp.core.OID` + Unique identifier for this LinearSegmentGroup + left, right : float + Initial left/right (x) values for the segments in this group. + label : str, optional + Optional label to display on each segment + movable : bool, optional + Set the initial movable state of the segments, default is False + + Attributes + ---------- + sigSegmentUpdate : pyqtSignal(LineUpdate) + Qt Signal, emits a :class:`LineUpdate` object when the segment group has + been mutated (Updated/Deleted) + + Notes + ----- + An update timer (QTimer) is utilized to rate-limit segment update signal + emissions during resize operations. Instead of a signal being emitted for + every discrete movement/drag-resize of a segment, updates are emitted only + when the timer expires. The timer is also reset with every movement so that + updates are not triggered until the user has momentarily paused dragging, or + finished their movement. + + """ + sigSegmentUpdate = pyqtSignal(object) + + def __init__(self, plots: Iterable[PlotItem], uid: OID, + left: float, right: float, label: str = '', + movable: bool = False, parent: QObject = None): + super().__init__(parent=parent) + self._uid = uid + self._segments: List[LinearSegment] = [] + self._label_text = label + self._updating = False + self._timer = QTimer(self) + self._timer.setInterval(50) + self._timer.timeout.connect(self._update_done) + + for plot in plots: + segment = LinearSegment(plot, (left, right), label=label, + movable=movable) + segment.sigRegionChanged.connect(self._update_region) + segment.sigLabelChanged.connect(self._update_label) + segment.sigDeleteRequested.connect(self.delete) + self._segments.append(segment) + + @property + def left(self) -> pd.Timestamp: + return pd.to_datetime(self._segments[0].getRegion()[0]) + + @property + def right(self) -> pd.Timestamp: + return pd.to_datetime(self._segments[0].getRegion()[1]) + + @property + def region(self) -> Tuple[float, float]: + for segment in self._segments: + return segment.getRegion() + + @property + def movable(self) -> bool: + return self._segments[0].movable + + @property + def label_text(self) -> str: + return self._label_text + + def set_movable(self, movable: bool): + for segment in self._segments: + segment.setMovable(movable) + + def _update_label(self, label: str): + for segment in self._segments: + segment.label_text = label + self._label_text = label + self._emit_update(StateAction.UPDATE) + + def _update_region(self, segment: LinearSegment): + """Update sibling segments to new region bounds""" + if self._updating: return - self.sigLabelChanged.emit(self, str(text).strip()) + else: + self._updating = True + self._timer.start() + for seg in [x for x in self._segments if x is not segment]: + seg.setRegion(segment.getRegion()) + self._updating = False + + def _update_done(self): + """Emit an update object when the rate-limit timer has expired""" + self._timer.stop() + self._emit_update(StateAction.UPDATE) + + def delete(self): + """Delete all child segments and emit a DELETE update""" + for segment in self._segments: + segment.remove() + self._emit_update(StateAction.DELETE) + + def _emit_update(self, action: StateAction = StateAction.UPDATE): + """Emit a LineUpdate object with the current segment parameters + Creates and emits a LineUpdate named-tuple with the current left and + right x-values of the segment, and the current label-text. + + Parameters + ---------- + action : StateAction, optional + Optionally specify the action for the update, defaults to UPDATE. + Use this parameter to trigger a DELETE action for instance. + + """ + update = LineUpdate(action, self._uid, self.left, self.right, + self._label_text) + self.sigSegmentUpdate.emit(update) diff --git a/dgp/gui/plotting/plotters.py b/dgp/gui/plotting/plotters.py index b21b542..8e05557 100644 --- a/dgp/gui/plotting/plotters.py +++ b/dgp/gui/plotting/plotters.py @@ -1,8 +1,9 @@ # -*- coding: utf-8 -*- import logging +from typing import Dict import pandas as pd -from PyQt5.QtCore import pyqtSignal, Qt, QTimer +from PyQt5.QtCore import pyqtSignal, Qt from pyqtgraph import Point from dgp.core import StateAction @@ -58,17 +59,8 @@ class LineSelectPlot(GridPlotWidget): def __init__(self, rows=1, parent=None): super().__init__(rows=rows, cols=1, grid=True, sharex=True, multiy=True, timeaxis=True, parent=parent) - self._selecting = False - self._segments = {} - self._updating = False - - # Rate-limit line updates using a timer. - self._line_update: LinearSegment = None - self._update_timer = QTimer(self) - self._update_timer.setInterval(100) - self._update_timer.timeout.connect(self._update_done) - + self._segments: Dict[OID, LinearSegmentGroup] = {} self.add_onclick_handler(self.onclick) @property @@ -79,11 +71,10 @@ def selection_mode(self): def selection_mode(self, value): self._selecting = bool(value) for group in self._segments.values(): - for lfr in group: # type: LinearSegment - lfr.setMovable(value) + group.set_movable(self._selecting) def add_segment(self, start: float, stop: float, label: str = None, - uid: OID = None, emit=True) -> None: + uid: OID = None, emit=True) -> LinearSegmentGroup: """ Add a LinearSegment selection across all linked x-axes With width ranging from start:stop and an optional label. @@ -106,76 +97,22 @@ def add_segment(self, start: float, stop: float, label: str = None, segment """ - if isinstance(start, pd.Timestamp): start = start.value if isinstance(stop, pd.Timestamp): stop = stop.value - patch_region = [start, stop] - - grpid = uid or OID(tag='segment') - # Note pd.to_datetime(scalar) returns pd.Timestamp - update = LineUpdate(StateAction.CREATE, grpid, - pd.to_datetime(start), pd.to_datetime(stop), label) - - lfr_group = [] - for i, plot in enumerate(self.plots): - lfr = LinearSegment(parent=self, label=label) - lfr.group = grpid - plot.addItem(lfr) - plot.addItem(lfr._label) - lfr.setRegion(patch_region) - lfr.setMovable(self._selecting) - lfr.sigRegionChanged.connect(self._update_segments) - lfr.sigLabelChanged.connect(self.set_label) - lfr.sigDeleteRequested.connect(self.remove_segment) - plot.sigYRangeChanged.connect(lfr.y_rng_changed) - - lfr_group.append(lfr) - - self._segments[grpid] = lfr_group - if emit: - self.sigSegmentChanged.emit(update) - def get_segment(self, uid: OID): - return self._segments[uid][0] + uid = uid or OID(tag='segment') + group = LinearSegmentGroup(self.plots, uid, start, stop, label=label, + movable=self._selecting) + group.sigSegmentUpdate.connect(self.sigSegmentChanged.emit) + group.sigSegmentUpdate.connect(self._segment_updated) + self._segments[uid] = group - def remove_segment(self, item: LinearSegment): - """Remove the segment 'item' and all of its siblings (in the same group) - - """ - if not isinstance(item, LinearSegment): - raise TypeError(f'{item!r} is not a valid type. Expected ' - f'LinearSegment') - - grpid = item.group - x0, x1 = item.getRegion() - update = LineUpdate(StateAction.DELETE, grpid, - pd.to_datetime(x0), pd.to_datetime(x1), None) - grp = self._segments[grpid] - for i, plot in enumerate(self.plots): - lfr: LinearSegment = grp[i] - try: - plot.sigYRangeChanged.disconnect(lfr.y_rng_changed) - except TypeError: # pragma: no cover - pass - plot.removeItem(lfr._label) - plot.removeItem(lfr) - del self._segments[grpid] - self.sigSegmentChanged.emit(update) - - def set_label(self, item: LinearSegment, text: str): - """Set the text label of every LFR in the same group as item""" - if not isinstance(item, LinearSegment): - raise TypeError(f'Item must be of type LinearSegment') - group = self._segments[item.group] - for lfr in group: # type: LinearSegment - lfr.label = text - - x0, x1 = item.getRegion() - update = LineUpdate(StateAction.UPDATE, item.group, - pd.to_datetime(x0), pd.to_datetime(x1), text) - self.sigSegmentChanged.emit(update) + if emit: + update = LineUpdate(StateAction.CREATE, uid, group.left, + group.right, group.label_text) + self.sigSegmentChanged.emit(update) def onclick(self, ev): # pragma: no cover """Onclick handler for mouse left/right click. @@ -187,7 +124,7 @@ def onclick(self, ev): # pragma: no cover pos: Point = event.pos() except AttributeError: # Avoid error when clicking around plot, due to an attempt to - # call mapFromScene on None in pyqtgraph/mouseEvents.py + # call mapFromScene on None in pyqtgraph/mouseEvents.py return if event.button() == Qt.RightButton: return @@ -210,46 +147,6 @@ def onclick(self, ev): # pragma: no cover stop = xpos + (vb_span * 0.05) self.add_segment(start, stop) - def _update_segments(self, item: LinearSegment): - """Update other LinearRegionItems in the group of 'item' to match the - new region. - A flag (_updating) is set here as we only want to process updates from - the first item - as this function will be called during the update - process by each item in the group when LinearRegionItem.setRegion() - emits a sigRegionChanged event. - - A timer (_update_timer) is also used to avoid emitting a - :class:`LineUpdate` with every pixel adjustment. - _update_done will be called after the QTimer times-out (100ms default) - in order to emit the intermediate or final update. - - """ - if self._updating: - return - - self._update_timer.start() - self._updating = True - self._line_update = item - new_region = item.getRegion() - group = self._segments[item.group] - for lri in [i for i in group if i is not item]: - lri.setRegion(new_region) - self._updating = False - - def _update_done(self): - """Called when the update_timer times out to emit the completed update - - Create a :class:`LineUpdate` with the modified line segment parameters - start, stop, _label - - """ - self._update_timer.stop() - x0, x1 = self._line_update.getRegion() - update = LineUpdate(StateAction.UPDATE, self._line_update.group, - pd.to_datetime(x0), pd.to_datetime(x1), None) - self.sigSegmentChanged.emit(update) - self._line_update = None - def _check_proximity(self, x, span, proximity=0.03) -> bool: """ Check the proximity of a mouse click at location 'x' in relation to @@ -272,9 +169,12 @@ def _check_proximity(self, x, span, proximity=0.03) -> bool: """ prox = span * proximity for group in self._segments.values(): - lri0 = group[0] # type: LinearSegment - lx0, lx1 = lri0.getRegion() - if lx0 - prox <= x <= lx1 + prox: - print("New point is too close") + x0, x1 = group.region + if x0 - prox <= x <= x1 + prox: + _log.warning("New segment is too close to an existing segment") return False return True + + def _segment_updated(self, update: LineUpdate): + if update.action is StateAction.DELETE: + del self._segments[update.uid] diff --git a/tests/test_plots.py b/tests/test_plots.py index 5e3c9a1..9d08abe 100644 --- a/tests/test_plots.py +++ b/tests/test_plots.py @@ -339,14 +339,12 @@ def test_LineSelectPlot_selection_mode(): assert 1 == len(plot._segments) - for lfr_grp in plot._segments.values(): - for lfr in lfr_grp: # type: LinearSegment - assert lfr.movable + for lfr_grp in plot._segments.values(): # type: LinearSegmentGroup + assert lfr_grp.movable plot.selection_mode = False for lfr_grp in plot._segments.values(): - for lfr in lfr_grp: - assert not lfr.movable + assert not lfr_grp.movable def test_LineSelectPlot_add_segment(): @@ -368,14 +366,14 @@ def test_LineSelectPlot_add_segment(): assert 1 == len(update_spy) assert 1 == len(plot._segments) lfr_grp = plot._segments[ts_oid] - assert _rows == len(lfr_grp) + assert _rows == len(lfr_grp._segments) # Test adding segment using pandas.Timestamp values plot.add_segment(pd_start, pd_stop, uid=pd_oid) assert 2 == len(update_spy) assert 2 == len(plot._segments) lfr_grp = plot._segments[pd_oid] - assert _rows == len(lfr_grp) + assert _rows == len(lfr_grp._segments) # Test adding segment with no signal emission plot.add_segment(ts_start + 2000, ts_stop + 2000, emit=False) @@ -396,31 +394,14 @@ def test_LineSelectPlot_remove_segment(): assert isinstance(update_spy[0][0], LineUpdate) assert 1 == len(plot._segments) - segments = plot._segments[lfr_oid] - assert segments[0] in plot.get_plot(row=0).items - assert segments[1] in plot.get_plot(row=1).items - - assert lfr_oid == segments[0].group - assert lfr_oid == segments[1].group - - with pytest.raises(TypeError): - plot.remove_segment("notavalidtype") + group = plot._segments[lfr_oid] + assert group._segments[0] in plot.get_plot(row=0).items + assert group._segments[1] in plot.get_plot(row=1).items - plot.remove_segment(segments[0]) + group.delete() assert 0 == len(plot._segments) -def test_LineSelectPlot_get_segment(): - # Test ability to retrieve segment reference (for possible UI interaction) - plot = LineSelectPlot(rows=2) - - uid = OID(tag='test_segment') - plot.add_segment(2, 7, uid=uid, emit=False) - - segment = plot.get_segment(uid) - assert plot._segments[uid][0] == segment - - def test_LineSelectPlot_set_label(gravity: pd.Series): plot = LineSelectPlot(rows=2) update_spy = QSignalSpy(plot.sigSegmentChanged) @@ -431,24 +412,21 @@ def test_LineSelectPlot_set_label(gravity: pd.Series): assert 1 == len(update_spy) segment_grp = plot._segments[uid] - segment0 = segment_grp[0] - segment1 = segment_grp[1] + segment0 = segment_grp._segments[0] + segment1 = segment_grp._segments[1] assert isinstance(segment0, LinearSegment) assert '' == segment0._label.textItem.toPlainText() - assert '' == segment0.label + assert '' == segment0.label_text _label = 'Flight-1' - plot.set_label(segment0, _label) + segment_grp._update_label(_label) assert 2 == len(update_spy) update = update_spy[1][0] assert _label == update.label assert _label == segment0._label.textItem.toPlainText() assert _label == segment1._label.textItem.toPlainText() - with pytest.raises(TypeError): - plot.set_label(uid, 'Fail') - def test_LineSelectPlot_check_proximity(gravdata): _rows = 2 From 1a5564acc971b378a4658ed05b9272a6a4e7edf3 Mon Sep 17 00:00:00 2001 From: Zachery Brady Date: Mon, 13 Aug 2018 10:10:40 -0600 Subject: [PATCH 198/236] Implement DataSegment reference tracking. Add ability for DataSegmentController to track references to representations of itself painted in a plot. This enables actions on data-segments to be performed in a bi-directional manner, with the ability to mutate and propagate changes from both the actual plot surface, and via the DataSegmentController representation in the project tree view. Add Delete action to DataSegmentController Remove BaseController concrete class from DataSegmentController inheritance, use IBaseController instead. --- dgp/core/controllers/dataset_controller.py | 49 ++++++++++++++++++---- dgp/gui/plotting/plotters.py | 4 ++ dgp/gui/workspaces/PlotTab.py | 13 +++--- 3 files changed, 53 insertions(+), 13 deletions(-) diff --git a/dgp/core/controllers/dataset_controller.py b/dgp/core/controllers/dataset_controller.py index cf0b793..7377802 100644 --- a/dgp/core/controllers/dataset_controller.py +++ b/dgp/core/controllers/dataset_controller.py @@ -1,7 +1,8 @@ # -*- coding: utf-8 -*- import logging +import weakref from pathlib import Path -from typing import List, Union +from typing import List, Union, Generator, Set from pandas import DataFrame, Timestamp, concat from PyQt5.QtCore import Qt @@ -14,22 +15,34 @@ from dgp.core.models.datafile import DataFile from dgp.core.models.dataset import DataSet, DataSegment from dgp.core.types.enumerations import DataType, StateColor +from dgp.gui.plotting.helpers import LinearSegmentGroup from dgp.lib.etc import align_frames -from .controller_interfaces import IFlightController, IDataSetController +from .controller_interfaces import IFlightController, IDataSetController, IBaseController from .project_containers import ProjectFolder from .datafile_controller import DataFileController -from .controller_bases import BaseController -class DataSegmentController(BaseController): - def __init__(self, segment: DataSegment, clone=False): +class DataSegmentController(IBaseController): + """Controller for :class:`DataSegment` + + Implements reference tracking feature allowing the mutation of segments + representations displayed on a plot surface. + """ + def __init__(self, segment: DataSegment, parent: IDataSetController = None, + clone=False): super().__init__() self._segment = segment + self._parent = parent + self._refs: Set[LinearSegmentGroup] = weakref.WeakSet() self._clone = clone self.setData(segment, Qt.UserRole) self.update() + self._menu = [ + ('addAction', ('Delete', lambda: self._delete())) + ] + @property def uid(self) -> OID: return self._segment.uid @@ -40,7 +53,10 @@ def datamodel(self) -> DataSegment: @property def menu(self): - return [] + return self._menu + + def add_reference(self, group: LinearSegmentGroup): + self._refs.add(group) def update(self): self.setText(str(self._segment)) @@ -49,6 +65,18 @@ def update(self): def clone(self) -> 'DataSegmentController': return DataSegmentController(self._segment, clone=True) + def _delete(self): + """Delete this data segment from any active plots (via weak ref), and + from its parent DataSet/Controller + + """ + for ref in self._refs: + ref.delete() + try: + self._parent.remove_segment(self.uid) + except KeyError: + pass + class DataSetController(IDataSetController): def __init__(self, dataset: DataSet, flight: IFlightController): @@ -70,7 +98,7 @@ def __init__(self, dataset: DataSet, flight: IFlightController): self._segments = ProjectFolder("Segments") for segment in dataset.segments: - seg_ctrl = DataSegmentController(segment) + seg_ctrl = DataSegmentController(segment, parent=self) self._segments.appendRow(seg_ctrl) self.appendRow(self._grav_file) @@ -128,6 +156,11 @@ def series_model(self) -> QStandardItemModel: def segment_model(self) -> QStandardItemModel: return self._segments.internal_model + @property + def segments(self) -> Generator[DataSegmentController, None, None]: + for i in range(self._segments.rowCount()): + yield self._segments.child(i) + @property def columns(self) -> List[str]: return [col for col in self.dataframe()] @@ -216,7 +249,7 @@ def add_segment(self, uid: OID, start: Timestamp, stop: Timestamp, segment = DataSegment(uid, start, stop, self._segments.rowCount(), label) self._dataset.segments.append(segment) - seg_ctrl = DataSegmentController(segment) + seg_ctrl = DataSegmentController(segment, parent=self) self._segments.appendRow(seg_ctrl) return seg_ctrl diff --git a/dgp/gui/plotting/plotters.py b/dgp/gui/plotting/plotters.py index 8e05557..9441b5d 100644 --- a/dgp/gui/plotting/plotters.py +++ b/dgp/gui/plotting/plotters.py @@ -113,6 +113,10 @@ def add_segment(self, start: float, stop: float, label: str = None, update = LineUpdate(StateAction.CREATE, uid, group.left, group.right, group.label_text) self.sigSegmentChanged.emit(update) + return group + + def get_segment(self, uid: OID) -> LinearSegmentGroup: + return self._segments.get(uid, None) def onclick(self, ev): # pragma: no cover """Onclick handler for mouse left/right click. diff --git a/dgp/gui/workspaces/PlotTab.py b/dgp/gui/workspaces/PlotTab.py index d69a6f4..9d28c61 100644 --- a/dgp/gui/workspaces/PlotTab.py +++ b/dgp/gui/workspaces/PlotTab.py @@ -9,7 +9,6 @@ import PyQt5.QtWidgets as QtWidgets from dgp.core import StateAction -from dgp.core.models.dataset import DataSegment from dgp.gui.widgets.channel_select_widget import ChannelSelectWidget from dgp.core.controllers.flight_controller import FlightController from dgp.gui.plotting.plotters import LineUpdate, LineSelectPlot @@ -37,9 +36,12 @@ def __init__(self, label: str, flight: FlightController, **kwargs): self._plot = LineSelectPlot(rows=2) self._plot.sigSegmentChanged.connect(self._on_modified_line) - for segment in self._dataset.datamodel.segments: # type: DataSegment - self._plot.add_segment(segment.start, segment.stop, segment.label, - segment.uid, emit=False) + for segment in self._dataset.segments: + group = self._plot.add_segment(segment.get_attr('start'), + segment.get_attr('stop'), + segment.get_attr('label'), + segment.uid, emit=False) + segment.add_reference(group) self._setup_ui() @@ -127,4 +129,5 @@ def _on_modified_line(self, update: LineUpdate): if update.action is StateAction.UPDATE: self._dataset.update_segment(update.uid, start, stop, update.label) else: - self._dataset.add_segment(update.uid, start, stop, update.label) + seg = self._dataset.add_segment(update.uid, start, stop, update.label) + seg.add_reference(self._plot.get_segment(seg.uid)) From 6f97e50ff26c95c3adc51cfc691cc147ceced754 Mon Sep 17 00:00:00 2001 From: Zachery Brady Date: Tue, 7 Aug 2018 13:59:30 -0600 Subject: [PATCH 199/236] Implement cross-platform application state with QSettings. Rewrite the application splash widget to use QSettings to track/display recent projects. Also simplified much of the splash screen logic. Refactor create_project_dialog sigProjectCreated signal signature. --- dgp/gui/__init__.py | 179 +++++++++++++++++++- dgp/gui/dialogs/create_project_dialog.py | 5 +- dgp/gui/main.py | 3 +- dgp/gui/splash.py | 199 ++++++----------------- dgp/gui/ui/splash_screen.ui | 24 +-- 5 files changed, 243 insertions(+), 167 deletions(-) diff --git a/dgp/gui/__init__.py b/dgp/gui/__init__.py index 8c44fcf..4725a54 100644 --- a/dgp/gui/__init__.py +++ b/dgp/gui/__init__.py @@ -1,5 +1,176 @@ -# coding: utf-8 +# -*- coding: utf-8 -*- +import time +from enum import Enum +from pathlib import Path +from typing import Union + +from PyQt5.QtCore import QSettings, QModelIndex +from PyQt5.QtGui import QStandardItemModel, QStandardItem + +from dgp.core import OID + +__all__ = ['RecentProjectManager', 'SettingsKey', 'settings', 'PathRole'] + +PathRole = 0x101 +RefRole = 0x102 +UidRole = 0x103 +ModRole = 0x104 + +MaybePath = Union[Path, None] + +_ORG = "DynamicGravitySystems" +_APP = "DynamicGravityProcessor" +__settings = QSettings(QSettings.NativeFormat, QSettings.UserScope, _ORG, _APP) + + +def settings() -> QSettings: + return __settings + + +class ProjectRef: + """Simple project reference, contains the metadata required to load or refer + to a DGP project on the local computer. + Used by the RecentProjectManager to maintain a structured reference to any + specific project. + + ProjectRef provides a __hash__ method allowing references to be compared + by their UID hash + """ + def __init__(self, uid: str, name: str, path: str, modified=None, **kwargs): + self.uid: str = uid + self.name: str = name + self.path: str = str(path) + self.modified = modified or time.time() + + def __hash__(self): + return hash(self.uid) + + +class RecentProjectManager: + """QSettings wrapper used to manage the retrieval/setting of recent projects + that have been loaded for the user. + + """ + def __init__(self, qsettings: QSettings): + self._settings = qsettings + self._key = SettingsKey.RecentProjects() + self._model = QStandardItemModel() + + self._load_recent_projects() + + @property + def model(self): + return self._model + + @property + def last_project(self): + uid = self._settings.value(SettingsKey.LastProjectUid()) + path = self._settings.value(SettingsKey.LastProjectPath()) + name = self._settings.value(SettingsKey.LastProjectName()) + return ProjectRef(uid, name, path) + + def add_recent_project(self, uid: OID, name: str, path: Path) -> None: + """Add a project to the list of recent projects, managed via the + QSettings object + + If the project UID already exists in the recent projects list, update + the entry, otherwise create a new entry, commit it, and add an item + to the model representation. + + Parameters + ---------- + uid : OID + name : str + path : :class:`pathlib.Path` + + """ + str_path = str(path.absolute()) + ref = ProjectRef(uid.base_uuid, name, str_path) + + for i in range(self._model.rowCount()): + child: QStandardItem = self._model.item(i) + if child.data(UidRole) == uid: + child.setText(name) + child.setToolTip(str_path) + child.setData(path, PathRole) + child.setData(ref, RefRole) + break + else: # no break + item = self.item_from_ref(ref) + self._model.insertRow(0, item) + + self._commit_recent_projects() + + def clear(self) -> None: + """Clear recent projects from the model AND persistent settings state""" + self._model.clear() + self._settings.remove(self._key) + + def path(self, index: QModelIndex) -> MaybePath: + """Retrieve path data from a model item, given the items QModelIndex + + Returns + ------- + Path or None + pathlib.Path object if the item and data exists, else None + + """ + item: QStandardItem = self._model.itemFromIndex(index) + if item == 0: + return None + return item.data(PathRole) + + def _commit_recent_projects(self) -> None: + """Commit the recent projects model to file (via QSettings interface), + replacing any current items at the recent projects key. + + """ + self._settings.remove(self._key) + self._settings.beginWriteArray(self._key) + for i in range(self._model.rowCount()): + self._settings.setArrayIndex(i) + ref = self._model.item(i).data(RefRole) + for key in ref.__dict__: + self._settings.setValue(key, getattr(ref, key, None)) + + self._settings.endArray() + + def _load_recent_projects(self) -> None: + self._model.clear() + size = self._settings.beginReadArray(self._key) + for i in range(size): + self._settings.setArrayIndex(i) + keys = self._settings.childKeys() + params = {key: self._settings.value(key) for key in keys} + + ref = ProjectRef(**params) + item = self.item_from_ref(ref) + self._model.appendRow(item) + self._settings.endArray() + + @staticmethod + def item_from_ref(ref: ProjectRef) -> QStandardItem: + """Create a standardized QStandardItem for the model given a ProjectRef + + """ + item = QStandardItem(ref.name) + item.setToolTip(str(ref.path)) + item.setData(Path(ref.path), PathRole) + item.setData(ref.uid, UidRole) + item.setData(ref, RefRole) + item.setEditable(False) + return item + + +class SettingsKey(Enum): + WindowState = "MainWindow/state" + WindowGeom = "MainWindow/geom" + LastProjectPath = "Project/latest/path" + LastProjectName = "Project/latest/name" + LastProjectUid = "Project/latest/uid" + RecentProjects = "Project/recent" + + def __call__(self): + return self.value + -# from dgp.gui.splash import SplashScreen -# from dgp.gui.main import MainWindow -# from dgp.gui.dialogs import CreateProject, ImportData, AddFlight diff --git a/dgp/gui/dialogs/create_project_dialog.py b/dgp/gui/dialogs/create_project_dialog.py index be95217..d9e037e 100644 --- a/dgp/gui/dialogs/create_project_dialog.py +++ b/dgp/gui/dialogs/create_project_dialog.py @@ -15,7 +15,7 @@ class CreateProjectDialog(QDialog, Ui_CreateProjectDialog, FormValidator): - sigProjectCreated = pyqtSignal(AirborneProject, bool) + sigProjectCreated = pyqtSignal(AirborneProject) def __init__(self, parent=None): super().__init__(parent=parent) @@ -69,7 +69,8 @@ def accept(self): path.mkdir(parents=True) self._project = AirborneProject(name=name, path=path, description=self.qpte_notes.toPlainText()) - self.sigProjectCreated.emit(self._project, False) + self._project.to_json(to_file=True, indent=2) + self.sigProjectCreated.emit(self._project) else: # pragma: no cover self.ql_validation_err.setText("Invalid Project Type - Not Implemented") return diff --git a/dgp/gui/main.py b/dgp/gui/main.py index 43a86c7..d99f69d 100644 --- a/dgp/gui/main.py +++ b/dgp/gui/main.py @@ -233,7 +233,8 @@ def new_project_dialog(self) -> QDialog: Reference to modal CreateProjectDialog """ - def _add_project(prj: AirborneProject, new_window: bool): + def _add_project(prj: AirborneProject): + new_window = False self.log.info("Creating new project.") control = AirborneProjectController(prj) if new_window: diff --git a/dgp/gui/splash.py b/dgp/gui/splash.py index 5f557fe..5d878d3 100644 --- a/dgp/gui/splash.py +++ b/dgp/gui/splash.py @@ -3,22 +3,26 @@ import json import logging from pathlib import Path -from typing import Dict, Union +from typing import Union import PyQt5.QtWidgets as QtWidgets -import PyQt5.QtCore as QtCore +from PyQt5.QtCore import QModelIndex from dgp.core.controllers.project_controllers import AirborneProjectController from dgp.core.models.project import AirborneProject, GravityProject +from dgp.gui import settings, RecentProjectManager from dgp.gui.main import MainWindow from dgp.gui.utils import ConsoleHandler, LOG_FORMAT, LOG_COLOR_MAP, get_project_file from dgp.gui.dialogs.create_project_dialog import CreateProjectDialog -from dgp.gui.ui.splash_screen import Ui_Launcher +from dgp.gui.ui.splash_screen import Ui_ProjectLauncher -class SplashScreen(QtWidgets.QDialog, Ui_Launcher): +class SplashScreen(QtWidgets.QDialog, Ui_ProjectLauncher): def __init__(self, *args): super().__init__(*args) + self.setupUi(self) + + # Configure Logging self.log = self.setup_logging() # Experimental: Add a logger that sets the label_error text error_handler = ConsoleHandler(self.write_error) @@ -26,26 +30,15 @@ def __init__(self, *args): error_handler.setLevel(logging.DEBUG) self.log.addHandler(error_handler) - self.setupUi(self) - - # TODO: Change this to support other OS's - self.settings_dir = Path.home().joinpath( - 'AppData\Local\DynamicGravitySystems\DGP') - self.recent_file = self.settings_dir.joinpath('recent.json') - if not self.settings_dir.exists(): - self.log.info("Settings Directory doesn't exist, creating.") - self.settings_dir.mkdir(parents=True) + self.recents = RecentProjectManager(settings()) - self.btn_newproject.clicked.connect(self.new_project) - self.btn_browse.clicked.connect(self.browse_project) - self.list_projects.currentItemChanged.connect( - lambda item: self.set_selection(item, accept=False)) - self.list_projects.itemDoubleClicked.connect( - lambda item: self.set_selection(item, accept=True)) + self.qpb_new_project.clicked.connect(self.new_project) + self.qpb_browse.clicked.connect(self.browse_project) + self.qpb_clear_recents.clicked.connect(self.recents.clear) - self.project_path = None # type: Path + self.qlv_recents.setModel(self.recents.model) + self.qlv_recents.doubleClicked.connect(self._activated) - self.set_recent_list() self.show() @staticmethod @@ -57,146 +50,56 @@ def setup_logging(level=logging.DEBUG): root_log.addHandler(std_err_handler) return logging.getLogger(__name__) - def accept(self, project: Union[GravityProject, None] = None): - """ - Runs some basic verification before calling super(QDialog).accept(). - """ + def _activated(self, index: QModelIndex): + self.accept() - # Case where project object is passed to accept() - if isinstance(project, GravityProject): - self.log.debug("Opening new project: {}".format(project.name)) - elif not self.project_path: - self.log.error("No valid project selected.") - else: - try: - # project = prj.AirborneProject.load(self.project_path) - with open(self.project_path, 'r') as fd: - project = AirborneProject.from_json(fd.read()) - except FileNotFoundError: - self.log.error("Project could not be loaded from path: {}" - .format(self.project_path)) - return - - self.update_recent_files(self.recent_file, - {project.name: project.path}) - - controller = AirborneProjectController(project) - main_window = MainWindow(controller) - main_window.load() - super().accept() - return main_window - - def set_recent_list(self) -> None: - recent_files = self.get_recent_files(self.recent_file) - if not recent_files: - no_recents = QtWidgets.QListWidgetItem("No Recent Projects", - self.list_projects) - no_recents.setFlags(QtCore.Qt.NoItemFlags) - return None - - for name, path in recent_files.items(): - item = QtWidgets.QListWidgetItem('{name} :: {path}'.format( - name=name, path=str(path)), self.list_projects) - item.setData(QtCore.Qt.UserRole, path) - item.setToolTip(str(path.resolve())) - self.list_projects.setCurrentRow(0) - return None - - def set_selection(self, item: QtWidgets.QListWidgetItem, accept=False): - """Called when a recent item is selected""" - self.project_path = get_project_file(item.data(QtCore.Qt.UserRole)) - if not self.project_path: - item.setText("{} - Project Moved or Deleted" - .format(item.data(QtCore.Qt.UserRole))) + @property + def project_path(self) -> Union[Path, None]: + return self.recents.path(self.qlv_recents.currentIndex()) + + def load_project_from_dir(self, path: Path): + if not path.exists(): + self.log.error("Path does not exist") return + prj_file = get_project_file(path) + # TODO: Err handling and project type handling/dispatch + with prj_file.open('r') as fd: + project = AirborneProject.from_json(fd.read()) + return project + + def load_project(self, project, path: Path = None, spawn: bool = True): + if isinstance(project, AirborneProject): + controller = AirborneProjectController(project, path=path or project.path) + else: + raise TypeError(f"Unsupported project type {type(project)}") + if spawn: + window = MainWindow(controller) + window.load() + super().accept() + return window + else: + return controller - self.log.debug("Project path set to {}".format(self.project_path)) - if accept: - self.accept() + def accept(self): + if self.project_path is not None: + project = self.load_project_from_dir(self.project_path) + self.load_project(project, self.project_path, spawn=True) + super().accept() def new_project(self): """Allow the user to create a new project""" - dialog = CreateProjectDialog() - if dialog.exec_(): - project = dialog.project # type: AirborneProject - if not project.path.exists(): - print("Making directory") - project.path.mkdir(parents=True) - project.to_json(to_file=True) - - self.accept(project) + dialog = CreateProjectDialog(parent=self) + dialog.sigProjectCreated.connect(self.load_project) + dialog.exec_() def browse_project(self): """Allow the user to browse for a project directory and load.""" path = QtWidgets.QFileDialog.getExistingDirectory(self, "Select Project Dir") if not path: return - - prj_file = get_project_file(Path(path)) - if not prj_file: - self.log.error("No project files found") - return - - self.project_path = prj_file - self.accept() + project = self.load_project_from_dir(Path(path)) + self.load_project(project, path, spawn=True) def write_error(self, msg, level=None) -> None: self.label_error.setText(msg) self.label_error.setStyleSheet('color: {}'.format(LOG_COLOR_MAP[level])) - - @staticmethod - def update_recent_files(path: Path, update: Dict[str, Path]) -> None: - recents = SplashScreen.get_recent_files(path) - recents.update(update) - SplashScreen.set_recent_files(recents, path) - - @staticmethod - def get_recent_files(path: Path) -> Dict[str, Path]: - """ - Ingests a JSON file specified by path, containing project_name: - project_directory mappings and returns dict of valid projects ( - conducting path checking and conversion to pathlib.Path) - Parameters - ---------- - path : Path - Path object referencing JSON object containing mappings of recent - projects -> project directories - - Returns - ------- - Dict - Dictionary of (str) project_name: (pathlib.Path) project_directory mappings - If the specified path cannot be found, an empty dictionary is returned - """ - try: - with path.open('r') as fd: - raw_dict = json.load(fd) - _checked = {} - for name, strpath in raw_dict.items(): - _path = Path(strpath) - if get_project_file(_path) is not None: - _checked[name] = _path - except FileNotFoundError: - return {} - else: - return _checked - - @staticmethod - def set_recent_files(recent_files: Dict[str, Path], path: Path) -> None: - """ - Take a dictionary of recent projects (project_name: project_dir) and - write it out to a JSON formatted file - specified by path - Parameters - ---------- - recent_files : Dict[str, Path] - - path : Path - - Returns - ------- - None - """ - serializable = {name: str(path) for name, path in recent_files.items()} - with path.open('w+') as fd: - json.dump(serializable, fd) diff --git a/dgp/gui/ui/splash_screen.ui b/dgp/gui/ui/splash_screen.ui index 2e395d1..4283f2c 100644 --- a/dgp/gui/ui/splash_screen.ui +++ b/dgp/gui/ui/splash_screen.ui @@ -1,7 +1,7 @@ - Launcher - + ProjectLauncher + 0 @@ -25,7 +25,7 @@ - + <html><head/><body><p align="center"><span style=" font-size:16pt; font-weight:600; color:#55557f;">Dynamic Gravity Processor</span></p></body></html> @@ -51,7 +51,7 @@ - + <html><head/><body><p align="center">Version 0.1</p><p align="center">Licensed under the Apache-2.0 License</p></body></html> @@ -79,7 +79,7 @@ 0 - + 2 @@ -92,7 +92,7 @@ - + 100 @@ -108,7 +108,7 @@ - + 0 @@ -139,14 +139,14 @@ 0 - + &New Project - + Browse for a project @@ -172,7 +172,7 @@ - + 40 @@ -236,7 +236,7 @@ dialog_buttons rejected() - Launcher + ProjectLauncher reject() @@ -252,7 +252,7 @@ dialog_buttons accepted() - Launcher + ProjectLauncher accept() From b01d5e8e03cac1880932d58e00587ee1927da6b3 Mon Sep 17 00:00:00 2001 From: Zachery Brady Date: Wed, 8 Aug 2018 13:05:12 -0600 Subject: [PATCH 200/236] Rename splash.py, enhance project loading function. Rename splash.py dialog to RecentProjectDialog, the project loading screen will no longer be shown by default (before the MainWindow), instead it will be displayed only if no recent projects is defined (based on user local settings). Enhanced utility script to find/load projects from a directory location. The 'load_project_from_path' function will now iterate any JSON file in the specified path, and check for a _type property, which is then used to select the appropriate Project class to load the file. --- .../recent_project_dialog.py} | 74 +++++++++---------- ...ash_screen.ui => recent_project_dialog.ui} | 8 +- dgp/gui/utils.py | 57 ++++++++++---- tests/test_gui_utils.py | 10 --- 4 files changed, 84 insertions(+), 65 deletions(-) rename dgp/gui/{splash.py => dialogs/recent_project_dialog.py} (58%) rename dgp/gui/ui/{splash_screen.ui => recent_project_dialog.ui} (97%) diff --git a/dgp/gui/splash.py b/dgp/gui/dialogs/recent_project_dialog.py similarity index 58% rename from dgp/gui/splash.py rename to dgp/gui/dialogs/recent_project_dialog.py index 5d878d3..5458953 100644 --- a/dgp/gui/splash.py +++ b/dgp/gui/dialogs/recent_project_dialog.py @@ -1,23 +1,26 @@ # -*- coding: utf-8 -*- import sys -import json import logging from pathlib import Path from typing import Union import PyQt5.QtWidgets as QtWidgets -from PyQt5.QtCore import QModelIndex +from PyQt5.QtCore import QModelIndex, pyqtSignal -from dgp.core.controllers.project_controllers import AirborneProjectController -from dgp.core.models.project import AirborneProject, GravityProject -from dgp.gui import settings, RecentProjectManager -from dgp.gui.main import MainWindow -from dgp.gui.utils import ConsoleHandler, LOG_FORMAT, LOG_COLOR_MAP, get_project_file +from dgp.gui import RecentProjectManager +from dgp.gui.utils import ConsoleHandler, LOG_FORMAT, LOG_COLOR_MAP, load_project_from_path from dgp.gui.dialogs.create_project_dialog import CreateProjectDialog -from dgp.gui.ui.splash_screen import Ui_ProjectLauncher +from dgp.gui.ui.recent_project_dialog import Ui_RecentProjects -class SplashScreen(QtWidgets.QDialog, Ui_ProjectLauncher): +class RecentProjectDialog(QtWidgets.QDialog, Ui_RecentProjects): + """Display a QDialog with a recent project's list, and ability to browse for, + or create a new project. + Recent projects are retrieved via the QSettings object and global DGP keys. + + """ + sigProjectLoaded = pyqtSignal(object) + def __init__(self, *args): super().__init__(*args) self.setupUi(self) @@ -30,7 +33,7 @@ def __init__(self, *args): error_handler.setLevel(logging.DEBUG) self.log.addHandler(error_handler) - self.recents = RecentProjectManager(settings()) + self.recents = RecentProjectManager() self.qpb_new_project.clicked.connect(self.new_project) self.qpb_browse.clicked.connect(self.browse_project) @@ -57,48 +60,43 @@ def _activated(self, index: QModelIndex): def project_path(self) -> Union[Path, None]: return self.recents.path(self.qlv_recents.currentIndex()) - def load_project_from_dir(self, path: Path): - if not path.exists(): - self.log.error("Path does not exist") - return - prj_file = get_project_file(path) - # TODO: Err handling and project type handling/dispatch - with prj_file.open('r') as fd: - project = AirborneProject.from_json(fd.read()) - return project - - def load_project(self, project, path: Path = None, spawn: bool = True): - if isinstance(project, AirborneProject): - controller = AirborneProjectController(project, path=path or project.path) - else: - raise TypeError(f"Unsupported project type {type(project)}") - if spawn: - window = MainWindow(controller) - window.load() - super().accept() - return window - else: - return controller + def load_project(self, path: Path): + """Load a project from file and emit the result + + Parameters + ---------- + path + + Returns + ------- + + """ + assert isinstance(path, Path) + project = load_project_from_path(path) + project.path = path # update project's path in case folder was moved + self.sigProjectLoaded.emit(project) + super().accept() def accept(self): if self.project_path is not None: - project = self.load_project_from_dir(self.project_path) - self.load_project(project, self.project_path, spawn=True) + self.load_project(self.project_path) super().accept() + else: + self.log.warning("No project selected") def new_project(self): """Allow the user to create a new project""" dialog = CreateProjectDialog(parent=self) - dialog.sigProjectCreated.connect(self.load_project) - dialog.exec_() + dialog.sigProjectCreated.connect(self.sigProjectLoaded.emit) + if dialog.exec_(): + super().accept() def browse_project(self): """Allow the user to browse for a project directory and load.""" path = QtWidgets.QFileDialog.getExistingDirectory(self, "Select Project Dir") if not path: return - project = self.load_project_from_dir(Path(path)) - self.load_project(project, path, spawn=True) + self.load_project(Path(path)) def write_error(self, msg, level=None) -> None: self.label_error.setText(msg) diff --git a/dgp/gui/ui/splash_screen.ui b/dgp/gui/ui/recent_project_dialog.ui similarity index 97% rename from dgp/gui/ui/splash_screen.ui rename to dgp/gui/ui/recent_project_dialog.ui index 4283f2c..e5db9e7 100644 --- a/dgp/gui/ui/splash_screen.ui +++ b/dgp/gui/ui/recent_project_dialog.ui @@ -1,7 +1,7 @@ - ProjectLauncher - + RecentProjects + 0 @@ -236,7 +236,7 @@ dialog_buttons rejected() - ProjectLauncher + RecentProjects reject() @@ -252,7 +252,7 @@ dialog_buttons accepted() - ProjectLauncher + RecentProjects accept() diff --git a/dgp/gui/utils.py b/dgp/gui/utils.py index ba096f2..01e8444 100644 --- a/dgp/gui/utils.py +++ b/dgp/gui/utils.py @@ -1,11 +1,12 @@ # -*- coding: utf-8 -*- - +import json import logging from pathlib import Path from typing import Union, Callable from PyQt5.QtCore import QThread, pyqtSignal, pyqtBoundSignal +from dgp.core.models.project import GravityProject, AirborneProject from dgp.core.oid import OID __all__ = ['LOG_FORMAT', 'LOG_COLOR_MAP', 'LOG_LEVEL_MAP', 'ConsoleHandler', @@ -19,6 +20,9 @@ LOG_LEVEL_MAP = {'debug': logging.DEBUG, 'info': logging.INFO, 'warning': logging.WARNING, 'error': logging.ERROR, 'critical': logging.CRITICAL} +_loaders = {GravityProject.__name__: GravityProject, + AirborneProject.__name__: AirborneProject} + _log = logging.getLogger(__name__) @@ -98,24 +102,51 @@ def run(self): _log.exception(f"Exception executing {self.__name__}") -def get_project_file(path: Path) -> Union[Path, None]: - """ - Attempt to retrieve a project file (*.d2p) from the given dir path, - otherwise signal failure by returning False. +def load_project_from_path(path: Path) -> GravityProject: + """Search a directory path for a valid DGP json file, then load the project + using the appropriate class loader. + + Any discovered .json files are loaded and parsed using a naive JSON loader, + the top level object is then inspected for an `_type` attribute, which + determines the project loader to use. + + The project's path attribute is updated to the path where it was loaded from + upon successful decoding. This is to ensure any relative paths encoded in + the project do not break if the project's directory has been moved/renamed. Parameters ---------- - path : Path - Directory path to search for DGP project files + path: :class:`pathlib.Path` + Directory path which contains a valid DGP project .json file. + If the path specified is not a directory, the parent is automatically + used + + Raises + ------ + :exc:`FileNotFoundError` + If supplied `path` does not exist, or + If no valid project JSON file could be loaded from the path + - Returns - ------- - Path : absolute path to DGP JSON file if found, else None + ToDo: Use QLockFile to try and lock the project json file for exclusive use """ - # TODO: Read JSON and check for presence of a magic attribute that marks a project file - for child in sorted(path.glob('*.json')): - return child.resolve() + if not path.exists(): + raise FileNotFoundError(f'Non-existent path supplied {path!s}') + if not path.is_dir(): + path = path.parent + + for child in path.glob('*.json'): + with child.open('r') as fd: + raw_str = fd.read() + raw_json: dict = json.loads(raw_str) + + loader = _loaders.get(raw_json.get('_type', None), None) + if loader is not None: + project = loader.from_json(raw_str) + project.path = path + return project + raise FileNotFoundError(f'No valid DGP JSON file could be loaded from {path!s}') def clear_signal(signal: pyqtBoundSignal): diff --git a/tests/test_gui_utils.py b/tests/test_gui_utils.py index bcdc502..cd3cedb 100644 --- a/tests/test_gui_utils.py +++ b/tests/test_gui_utils.py @@ -4,13 +4,3 @@ import dgp.gui.utils as utils -def test_get_project_file(tmpdir): - _dir = Path(tmpdir) - # _other_file = _dir.joinpath("abc.json") - # _other_file.touch() - _prj_file = _dir.joinpath("dgp.json") - _prj_file.touch() - - file = utils.get_project_file(_dir) - assert _prj_file.resolve() == file - From 855b5a21eb0e722f3ed9ce83c277cdfc5e15806e Mon Sep 17 00:00:00 2001 From: Zachery Brady Date: Wed, 8 Aug 2018 14:14:12 -0600 Subject: [PATCH 201/236] Refactor application settings module, add splash screen. Add simple splash screen (with placeholder image) which displays on launch. Change application window display ordering, the old 'splash' dialog (now RecentProjectsDialog) is not displayed unless there is no saved project for the user in their local settings, and it is spawned from the MainWindow (just before the MainWindow is set to visible) Application settings (QSettings) methods and classes moved into their own module (gui/settings.py), while some of the objects are re-exported via gui/__init__. --- dgp/__main__.py | 25 +++- dgp/gui/__init__.py | 176 +--------------------- dgp/gui/settings.py | 224 ++++++++++++++++++++++++++++ dgp/gui/ui/resources/dgp-splash.png | Bin 0 -> 135272 bytes dgp/gui/ui/resources/resources.qrc | 1 + tests/conftest.py | 31 ++++ 6 files changed, 275 insertions(+), 182 deletions(-) create mode 100644 dgp/gui/settings.py create mode 100644 dgp/gui/ui/resources/dgp-splash.png diff --git a/dgp/__main__.py b/dgp/__main__.py index 436b6ed..be64076 100644 --- a/dgp/__main__.py +++ b/dgp/__main__.py @@ -1,14 +1,15 @@ -# coding: utf-8 - -import os +# -*- coding: utf-8 -*- import sys +import time import traceback -sys.path.append(os.path.dirname(__file__)) - +from PyQt5.QtCore import Qt +from PyQt5.QtGui import QPixmap from PyQt5 import QtCore -from PyQt5.QtWidgets import QApplication -from dgp.gui.splash import SplashScreen +from PyQt5.QtWidgets import QApplication, QSplashScreen + +from dgp.gui.main import MainWindow +# sys.path.append(os.path.dirname(__file__)) def excepthook(type_, value, traceback_): @@ -24,13 +25,21 @@ def excepthook(type_, value, traceback_): app = None +_align = Qt.AlignBottom | Qt.AlignHCenter def main(): global app sys.excepthook = excepthook app = QApplication(sys.argv) - form = SplashScreen() + splash = QSplashScreen(QPixmap(":/images/splash")) + splash.showMessage("Loading Dynamic Gravity Processor", _align) + splash.show() + time.sleep(.5) + window = MainWindow() + window.sigStatusMessage.connect(lambda msg: splash.showMessage(msg, _align)) + window.load() + splash.finish(window) sys.exit(app.exec_()) diff --git a/dgp/gui/__init__.py b/dgp/gui/__init__.py index 4725a54..d47a06e 100644 --- a/dgp/gui/__init__.py +++ b/dgp/gui/__init__.py @@ -1,176 +1,4 @@ # -*- coding: utf-8 -*- -import time -from enum import Enum -from pathlib import Path -from typing import Union - -from PyQt5.QtCore import QSettings, QModelIndex -from PyQt5.QtGui import QStandardItemModel, QStandardItem - -from dgp.core import OID - -__all__ = ['RecentProjectManager', 'SettingsKey', 'settings', 'PathRole'] - -PathRole = 0x101 -RefRole = 0x102 -UidRole = 0x103 -ModRole = 0x104 - -MaybePath = Union[Path, None] - -_ORG = "DynamicGravitySystems" -_APP = "DynamicGravityProcessor" -__settings = QSettings(QSettings.NativeFormat, QSettings.UserScope, _ORG, _APP) - - -def settings() -> QSettings: - return __settings - - -class ProjectRef: - """Simple project reference, contains the metadata required to load or refer - to a DGP project on the local computer. - Used by the RecentProjectManager to maintain a structured reference to any - specific project. - - ProjectRef provides a __hash__ method allowing references to be compared - by their UID hash - """ - def __init__(self, uid: str, name: str, path: str, modified=None, **kwargs): - self.uid: str = uid - self.name: str = name - self.path: str = str(path) - self.modified = modified or time.time() - - def __hash__(self): - return hash(self.uid) - - -class RecentProjectManager: - """QSettings wrapper used to manage the retrieval/setting of recent projects - that have been loaded for the user. - - """ - def __init__(self, qsettings: QSettings): - self._settings = qsettings - self._key = SettingsKey.RecentProjects() - self._model = QStandardItemModel() - - self._load_recent_projects() - - @property - def model(self): - return self._model - - @property - def last_project(self): - uid = self._settings.value(SettingsKey.LastProjectUid()) - path = self._settings.value(SettingsKey.LastProjectPath()) - name = self._settings.value(SettingsKey.LastProjectName()) - return ProjectRef(uid, name, path) - - def add_recent_project(self, uid: OID, name: str, path: Path) -> None: - """Add a project to the list of recent projects, managed via the - QSettings object - - If the project UID already exists in the recent projects list, update - the entry, otherwise create a new entry, commit it, and add an item - to the model representation. - - Parameters - ---------- - uid : OID - name : str - path : :class:`pathlib.Path` - - """ - str_path = str(path.absolute()) - ref = ProjectRef(uid.base_uuid, name, str_path) - - for i in range(self._model.rowCount()): - child: QStandardItem = self._model.item(i) - if child.data(UidRole) == uid: - child.setText(name) - child.setToolTip(str_path) - child.setData(path, PathRole) - child.setData(ref, RefRole) - break - else: # no break - item = self.item_from_ref(ref) - self._model.insertRow(0, item) - - self._commit_recent_projects() - - def clear(self) -> None: - """Clear recent projects from the model AND persistent settings state""" - self._model.clear() - self._settings.remove(self._key) - - def path(self, index: QModelIndex) -> MaybePath: - """Retrieve path data from a model item, given the items QModelIndex - - Returns - ------- - Path or None - pathlib.Path object if the item and data exists, else None - - """ - item: QStandardItem = self._model.itemFromIndex(index) - if item == 0: - return None - return item.data(PathRole) - - def _commit_recent_projects(self) -> None: - """Commit the recent projects model to file (via QSettings interface), - replacing any current items at the recent projects key. - - """ - self._settings.remove(self._key) - self._settings.beginWriteArray(self._key) - for i in range(self._model.rowCount()): - self._settings.setArrayIndex(i) - ref = self._model.item(i).data(RefRole) - for key in ref.__dict__: - self._settings.setValue(key, getattr(ref, key, None)) - - self._settings.endArray() - - def _load_recent_projects(self) -> None: - self._model.clear() - size = self._settings.beginReadArray(self._key) - for i in range(size): - self._settings.setArrayIndex(i) - keys = self._settings.childKeys() - params = {key: self._settings.value(key) for key in keys} - - ref = ProjectRef(**params) - item = self.item_from_ref(ref) - self._model.appendRow(item) - self._settings.endArray() - - @staticmethod - def item_from_ref(ref: ProjectRef) -> QStandardItem: - """Create a standardized QStandardItem for the model given a ProjectRef - - """ - item = QStandardItem(ref.name) - item.setToolTip(str(ref.path)) - item.setData(Path(ref.path), PathRole) - item.setData(ref.uid, UidRole) - item.setData(ref, RefRole) - item.setEditable(False) - return item - - -class SettingsKey(Enum): - WindowState = "MainWindow/state" - WindowGeom = "MainWindow/geom" - LastProjectPath = "Project/latest/path" - LastProjectName = "Project/latest/name" - LastProjectUid = "Project/latest/uid" - RecentProjects = "Project/recent" - - def __call__(self): - return self.value - +from .settings import settings, SettingsKey, RecentProjectManager, UserSettings +__all__ = ['settings', 'SettingsKey', 'RecentProjectManager', 'UserSettings'] diff --git a/dgp/gui/settings.py b/dgp/gui/settings.py new file mode 100644 index 0000000..053eaf5 --- /dev/null +++ b/dgp/gui/settings.py @@ -0,0 +1,224 @@ +# -*- coding: utf-8 -*- +import time +from contextlib import contextmanager +from enum import Enum +from pathlib import Path +from typing import Union, Generator + +from PyQt5.QtCore import QSettings, QModelIndex, QObject, pyqtSignal +from PyQt5.QtGui import QStandardItemModel, QStandardItem + +from dgp.core import OID + +PathRole = 0x101 +RefRole = 0x102 +UidRole = 0x103 +ModRole = 0x104 + +MaybePath = Union[Path, None] + +_ORG = "DynamicGravitySystems" +_APP = "DynamicGravityProcessor" +_settings = QSettings(QSettings.NativeFormat, QSettings.UserScope, _ORG, _APP) +_recent_model = QStandardItemModel() + + +def set_settings(handle: QSettings): + """Set the global QSettings object to a custom handler""" + global _settings + _settings = handle + + +def settings() -> QSettings: + """Expose the global QSettings object""" + return _settings + + +class SettingsKey(Enum): + WindowState = "MainWindow/state" + WindowGeom = "MainWindow/geom" + LastProjectPath = "Project/latest/path" + LastProjectName = "Project/latest/name" + LastProjectUid = "Project/latest/uid" + RecentProjects = "Project/recent" + + # User Option Properties + LoadLastProject = "User/LoadLast" + RestoreWorkspace = "User/RestoreWorkspace" + OpenInNewWindow = "User/OpenInNewWindow" + + def __call__(self): + """Allow retrieval of the enum value using call syntax `()` """ + return self.value + + +@contextmanager +def settings_group(key: str): + _settings.beginGroup(key) + yield settings + _settings.endGroup() + + +class RecentProject: + """Simple project reference, contains the metadata required to load or refer + to a DGP project on the local computer. + Used by the RecentProjectManager to maintain a structured reference to any + specific project. + + RecentProject provides a __hash__ method allowing references to be compared + by their UID hash + """ + def __init__(self, uid: str, name: str, path: str, modified=None, **kwargs): + self.uid: str = uid + self.name: str = name + self.path: str = str(path) + self.modified = modified or time.time() + + def __hash__(self): + return hash(self.uid) + + +class RecentProjectManager(QObject): + """QSettings wrapper used to manage the retrieval/setting of recent projects + that have been loaded for the user. + + """ + sigRecentProjectsChanged = pyqtSignal() + + def __init__(self, qsettings: QSettings = None, parent=None): + super().__init__(parent=parent) + self._settings = qsettings or _settings + self._key = SettingsKey.RecentProjects() + self._model = _recent_model + self._load_recent_projects() + + @property + def model(self): + return self._model + + @property + def project_refs(self) -> Generator[RecentProject, None, None]: + for i in range(self.model.rowCount()): + yield self.model.item(i).data(RefRole) + + def last_project_path(self) -> MaybePath: + path = Path(self._settings.value(SettingsKey.LastProjectPath(), None)) + return path + + def last_project_name(self) -> Union[str, None]: + return self._settings.value(SettingsKey.LastProjectName(), None) + + def add_recent_project(self, uid: OID, name: str, path: Path) -> None: + """Add a project to the list of recent projects, managed via the + QSettings object + + If the project UID already exists in the recent projects list, update + the entry, otherwise create a new entry, commit it, and add an item + to the model representation. + + Parameters + ---------- + uid : OID + name : str + path : :class:`pathlib.Path` + + """ + self.refresh() + str_path = str(path.absolute()) + ref = RecentProject(uid.base_uuid, name, str_path) + + for i in range(self._model.rowCount()): + child: QStandardItem = self._model.item(i) + if child.data(UidRole) == uid: + child.setText(name) + child.setToolTip(str_path) + child.setData(path, PathRole) + child.setData(ref, RefRole) + break + else: # no break + item = self.item_from_ref(ref) + self._model.insertRow(0, item) + + self._commit_recent_projects() + self.sigRecentProjectsChanged.emit() + + def clear(self) -> None: + """Clear recent projects from the model AND persistent settings state""" + self._model.clear() + self._settings.remove(self._key) + self.sigRecentProjectsChanged.emit() + + def refresh(self) -> None: + """Force a refresh of the recent projects list by reloading state + + Alias for _load_recent_projects + + """ + self._load_recent_projects() + + def path(self, index: QModelIndex) -> MaybePath: + """Retrieve path data from a model item, given the items QModelIndex + + Returns + ------- + Path or None + pathlib.Path object if the item and data exists, else None + + """ + item: QStandardItem = self._model.itemFromIndex(index) + if item == 0: + return None + return item.data(PathRole) + + def _commit_recent_projects(self) -> None: + """Commit the recent projects model to file (via QSettings interface), + replacing any current items at the recent projects key. + + """ + self._settings.remove(self._key) + self._settings.beginWriteArray(self._key) + for i in range(self._model.rowCount()): + self._settings.setArrayIndex(i) + ref = self._model.item(i).data(RefRole) + for key in ref.__dict__: + self._settings.setValue(key, getattr(ref, key, None)) + + self._settings.endArray() + + def _load_recent_projects(self) -> None: + self._model.clear() + + size = self._settings.beginReadArray(self._key) + for i in range(size): + self._settings.setArrayIndex(i) + keys = self._settings.childKeys() + params = {key: self._settings.value(key) for key in keys} + + ref = RecentProject(**params) + item = self.item_from_ref(ref) + self._model.appendRow(item) + self._settings.endArray() + self.sigRecentProjectsChanged.emit() + + @staticmethod + def item_from_ref(ref: RecentProject) -> QStandardItem: + """Create a standardized QStandardItem for the model given a RecentProject + + """ + item = QStandardItem(ref.name) + item.setToolTip(str(ref.path)) + item.setData(Path(ref.path), PathRole) + item.setData(ref.uid, UidRole) + item.setData(ref, RefRole) + item.setEditable(False) + return item + + +class UserSettings: + @property + def reopen_last(self) -> bool: + return bool(_settings.value(SettingsKey.LoadLastProject(), False)) + + @property + def new_window(self) -> bool: + return bool(_settings.value(SettingsKey.OpenInNewWindow(), False)) diff --git a/dgp/gui/ui/resources/dgp-splash.png b/dgp/gui/ui/resources/dgp-splash.png new file mode 100644 index 0000000000000000000000000000000000000000..4d028d9ed462018abb4defa96d545cb153c363c4 GIT binary patch literal 135272 zcmZ7eby(Eh_XP~k(B0hv0)hxgH^=~j0)m7zNSAci&>#XTNH@|A(hU;QNH>UtbV%28 z#_xOo-sgJeAHCo+Gw1BHW9_x}A>x&?JT4X$76bypRd^0lgFsNhe~}q5(7-=Fi6hq# 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8ff21c3..1e3c0f4 100644 --- a/tests/conftest.py +++ b/tests/conftest.py @@ -8,8 +8,10 @@ import pandas as pd import pytest from PyQt5 import QtCore +from PyQt5.QtCore import QSettings from PyQt5.QtWidgets import QApplication +from dgp.gui.settings import set_settings from dgp.core import DataType from dgp.core.controllers.project_controllers import AirborneProjectController from dgp.core.hdf5_manager import HDF5_NAME @@ -37,6 +39,35 @@ """ +@pytest.fixture(scope='session', autouse=True) +def shim_settings(): + """Override DGP Application settings object so as not to pollute the regular + settings when testing. + + This fixture will be automatically called, and will delete the settings ini + file at the conclusion of the test session. + """ + settings = QSettings(QSettings.IniFormat, QSettings.UserScope, "DgS", "DGP") + set_settings(settings) + yield + os.unlink(settings.fileName()) + + +def qt_msg_handler(type_, context, message: str): + level = { + QtCore.QtDebugMsg: "QtDebug", + QtCore.QtWarningMsg: "QtWarning", + QtCore.QtCriticalMsg: "QtCritical", + QtCore.QtFatalMsg: "QtFatal", + QtCore.QtInfoMsg: "QtInfo" + }.get(type_, "QtDebug") + if type_ >= QtCore.QtCriticalMsg: + print(f'QtMessage: {level} {message}', file=sys.stderr) + + +QtCore.qInstallMessageHandler(qt_msg_handler) + + def excepthook(type_, value, traceback_): """This allows IDE to properly display unhandled exceptions which are otherwise silently ignored as the application is terminated. From e03b5740e896ff82552ecfb1faee9d77678a7814 Mon Sep 17 00:00:00 2001 From: Zachery Brady Date: Wed, 8 Aug 2018 14:22:49 -0600 Subject: [PATCH 202/236] Enhance MainWindow loading logic, support for recent projects. Add QSettings integration to MainWindow, window state/geometry is now loaded/saved on open/exit. Update MainWindow compatibility with new RecentProjectsDialog. Allow MainWindow to be instantiated without defining a root project. Projects are added to the window via the add_project method. Add ability for user to open project in a new window (if there is already a project in the base MainWindow) via dialog input. Refactor new_project_dialog/open_project_dialog methods of MainWindow to uniformly use the open_project method instead of using custom inner functions. Add 'Recent Projects' sub-menu to the File menu, allowing users to directly open up other recent projects once the MainWindow is loaded. Add signal to project tree-model to notify when a project is closed via the tree view. --- dgp/core/controllers/project_treemodel.py | 10 +- dgp/gui/main.py | 227 +++++++++++++++------- tests/test_gui_main.py | 38 ++-- 3 files changed, 181 insertions(+), 94 deletions(-) diff --git a/dgp/core/controllers/project_treemodel.py b/dgp/core/controllers/project_treemodel.py index 06ed20e..09272ed 100644 --- a/dgp/core/controllers/project_treemodel.py +++ b/dgp/core/controllers/project_treemodel.py @@ -58,15 +58,18 @@ class ProjectTreeModel(QStandardItemModel): """ activeProjectChanged = pyqtSignal(str) projectMutated = pyqtSignal() + projectClosed = pyqtSignal(OID) tabOpenRequested = pyqtSignal(OID, object, str) tabCloseRequested = pyqtSignal(OID) progressNotificationRequested = pyqtSignal(ProgressEvent) - def __init__(self, project: IAirborneController, parent: Optional[QObject] = None): + def __init__(self, project: IAirborneController = None, + parent: Optional[QObject] = None): super().__init__(parent) self.log = logging.getLogger(__name__) - self.appendRow(project) - project.set_active(True) + if project is not None: + self.appendRow(project) + project.set_active(True) @property def active_project(self) -> Union[IAirborneController, None]: @@ -110,6 +113,7 @@ def remove_project(self, child: IAirborneController, confirm: bool = True) -> No self.tabCloseRequested.emit(flt.uid) child.save() self.removeRow(child.row()) + self.projectClosed.emit(child.uid) def close_flight(self, flight: IFlightController): self.tabCloseRequested.emit(flight.uid) diff --git a/dgp/gui/main.py b/dgp/gui/main.py index d99f69d..6b671bb 100644 --- a/dgp/gui/main.py +++ b/dgp/gui/main.py @@ -1,37 +1,40 @@ # -*- coding: utf-8 -*- -import pathlib import logging +from pathlib import Path import PyQt5.QtWidgets as QtWidgets -from PyQt5.QtCore import Qt, pyqtSlot -from PyQt5.QtGui import QColor -from PyQt5.QtWidgets import QMainWindow, QProgressDialog, QFileDialog, QDialog +from PyQt5.QtCore import Qt, pyqtSlot, pyqtSignal, QByteArray +from PyQt5.QtGui import QColor, QCloseEvent +from PyQt5.QtWidgets import QMainWindow, QProgressDialog, QFileDialog, QDialog, QMessageBox, QMenu, QApplication from dgp.core.oid import OID from dgp.core.controllers.controller_interfaces import IBaseController from dgp.core.controllers.project_controllers import AirborneProjectController from dgp.core.controllers.project_treemodel import ProjectTreeModel -from dgp.core.models.project import AirborneProject +from dgp.core.models.project import AirborneProject, GravityProject +from dgp.gui import settings, SettingsKey, RecentProjectManager, UserSettings from dgp.gui.utils import (ConsoleHandler, LOG_FORMAT, LOG_LEVEL_MAP, - LOG_COLOR_MAP, get_project_file, ProgressEvent) + LOG_COLOR_MAP, ProgressEvent, load_project_from_path) from dgp.gui.dialogs.create_project_dialog import CreateProjectDialog - +from dgp.gui.dialogs.recent_project_dialog import RecentProjectDialog from dgp.gui.workspace import WorkspaceTab, MainWorkspace from dgp.gui.ui.main_window import Ui_MainWindow class MainWindow(QMainWindow, Ui_MainWindow): """An instance of the Main Program Window""" + sigStatusMessage = pyqtSignal(str) - def __init__(self, project: AirborneProjectController, *args): + def __init__(self, *args): super().__init__(*args) - self.setupUi(self) - self.workspace: MainWorkspace - self.title = 'Dynamic Gravity Processor [*]' + self.setWindowTitle(self.title) + self.workspace: MainWorkspace + self.recents = RecentProjectManager() + self.user_settings = UserSettings() # Attach to the root logger to capture all child events self.log = logging.getLogger() @@ -45,18 +48,19 @@ def __init__(self, project: AirborneProjectController, *args): self.log.setLevel(logging.DEBUG) # Instantiate the Project Model and display in the ProjectTreeView - self.model = ProjectTreeModel(project, parent=self) + self.model = ProjectTreeModel(parent=self) self.project_tree.setModel(self.model) - self.project_tree.expandAll() + + # Add sub-menu to display recent projects + self.recent_menu = QMenu("Recent Projects") + self.menuFile.addMenu(self.recent_menu) # Initialize Variables - self.import_base_path = pathlib.Path('~').expanduser().joinpath( - 'Desktop') + self.import_base_path = Path('~').expanduser().joinpath('Desktop') self._default_status_timeout = 5000 # Status Msg timeout in milli-sec self._progress_events = {} self._mutated = False - self._init_slots() def _init_slots(self): # pragma: no cover @@ -93,18 +97,125 @@ def _init_slots(self): # pragma: no cover self.combo_console_verbosity.currentIndexChanged[str].connect( self.set_logging_level) - def load(self): - """Called from splash screen to initialize and load main window. - This may be safely deprecated as we currently do not perform any long - running operations on initial load as we once did.""" - self.setWindowState(Qt.WindowMaximized) - self.save_projects() + # Define recent projects menu action + self.recents.sigRecentProjectsChanged.connect(self._update_recent_menu) + self.model.projectClosed.connect(lambda x: self._update_recent_menu()) + self._update_recent_menu() + + def load(self, project: GravityProject = None, restore: bool = True): + """Interactively load the DGP MainWindow, restoring previous widget/dock + state, and any saved geometry state. + + If a project is explicitly specified then the project will be loaded into + the MainWindow, and the window shown. + If no project is specified, the users local settings are checked for the + last project that was active/opened, and it will be loaded into the + window. + Otherwise, a RecentProjectDialog is shown where the user can select from + a list of known recent projects, browse for a project folder, or create + a new project. + + Parameters + ---------- + project : :class:`GravityProject` + Explicitly pass a GravityProject or sub-type to be loaded into the + main window. + restore : bool, optional + If True (default) the MainWindow state and geometry will be restored + from the local settings repository. + + """ + if restore: + self.restoreState(settings().value(SettingsKey.WindowState(), QByteArray())) + self.restoreGeometry(settings().value(SettingsKey.WindowGeom(), QByteArray())) + + if project is not None: + self.sigStatusMessage.emit(f'Loading project {project.name}') + self.add_project(project) + elif self.recents.last_project_path() is not None and self.user_settings.reopen_last: + self.sigStatusMessage.emit(f'Loading last project') + self.log.info(f"Loading most recent project.") + project = load_project_from_path(self.recents.last_project_path()) + self.add_project(project) + else: + self.sigStatusMessage.emit("Selecting project") + recent_dlg = RecentProjectDialog() + recent_dlg.sigProjectLoaded.connect(self.add_project) + recent_dlg.exec_() + + self.project_tree.expandAll() self.show() - def closeEvent(self, *args, **kwargs): + def add_project(self, project: GravityProject): + """Add a project model to the window, first wrapping it in an + appropriate controller class + + Parameters + ---------- + project : :class:`GravityProject` + path : :class:`pathlib.Path` + + + """ + if isinstance(project, AirborneProject): + control = AirborneProjectController(project) + else: + raise TypeError(f'Unsupported project type: {type(project)}') + + self.model.add_project(control) + self.project_tree.setExpanded(control.index(), True) + self.recents.add_recent_project(control.uid, control.get_attr('name'), + control.path) + + def open_project(self, path: Path, prompt: bool = True) -> None: + """Open/load a project from the given path. + + Parameters + ---------- + path : :class:`pathlib.Path` + Directory path containing valid DGP project *.json file + prompt : bool, optional + If True display a message box asking the user if they would like to + open the project in a new window. + Else the project is opened into the current MainWindow + + """ + project = load_project_from_path(path) + if prompt and self.model.rowCount() > 0: + msg_dlg = QMessageBox(QMessageBox.Question, + "Open in New Window", + "Open Project in New Window?", + QMessageBox.Yes | QMessageBox.No, self) + res = msg_dlg.exec_() + else: + res = QMessageBox.No + + if res == QMessageBox.Yes: # Open new MainWindow instance + window = MainWindow() + window.load(project, restore=False) + window.activateWindow() + elif res == QMessageBox.No: # Open in current MainWindow + if project.uid in [p.uid for p in self.model.projects]: + self.log.warning("Project already opened in current workspace") + else: + self.add_project(project) + self.raise_() + + def closeEvent(self, event: QCloseEvent): self.log.info("Saving project and closing.") self.save_projects() - super().closeEvent(*args, **kwargs) + settings().setValue(SettingsKey.WindowState(), self.saveState()) + settings().setValue(SettingsKey.WindowGeom(), self.saveGeometry()) + + # Set last project to active project + if self.model.active_project is not None: + settings().setValue(SettingsKey.LastProjectUid(), + self.model.active_project.uid.base_uuid) + settings().setValue(SettingsKey.LastProjectPath(), + str(self.model.active_project.path.absolute())) + settings().setValue(SettingsKey.LastProjectName(), + self.model.active_project.get_attr("name")) + super().closeEvent(event) def set_logging_level(self, name: str): """PyQt Slot: Changes logging level to passed logging level name.""" @@ -126,6 +237,17 @@ def show_status(self, text, level): if level.lower() == 'error' or level.lower() == 'info': self.statusBar().showMessage(text, self._default_status_timeout) + def _update_recent_menu(self): + self.recent_menu.clear() + recents = [ref for ref in self.recents.project_refs + if ref.uid not in [p.uid for p in self.model.projects]] + if len(recents) == 0: + self.recent_menu.setEnabled(False) + else: + self.recent_menu.setEnabled(True) + for ref in recents: + self.recent_menu.addAction(ref.name, lambda: self.open_project(Path(ref.path))) + def _tab_open_requested(self, uid: OID, controller: IBaseController, label: str): """pyqtSlot(OID, IBaseController, str) @@ -143,7 +265,7 @@ def _tab_open_requested(self, uid: OID, controller: IBaseController, label: str) if tab is not None: self.workspace.setCurrentWidget(tab) else: - self.log.debug("Creating new tab and adding to workspace") + self.log.info("Loading flight data") ntab = WorkspaceTab(controller) self.workspace.addTab(ntab, label) self.workspace.setCurrentWidget(ntab) @@ -233,22 +355,12 @@ def new_project_dialog(self) -> QDialog: Reference to modal CreateProjectDialog """ - def _add_project(prj: AirborneProject): - new_window = False - self.log.info("Creating new project.") - control = AirborneProjectController(prj) - if new_window: - return MainWindow(control) - else: - self.model.add_project(control) - self.save_projects() - dialog = CreateProjectDialog(parent=self) - dialog.sigProjectCreated.connect(_add_project) + dialog.sigProjectCreated.connect(lambda prj: self.open_project(prj.path, prompt=False)) dialog.show() return dialog - def open_project_dialog(self, *args, path: pathlib.Path=None) -> QFileDialog: + def open_project_dialog(self, *args): # pragma: no cover """pyqtSlot() Opens an existing project within the current Project MainWindow, adding the opened project as a tree item to the Project Tree navigator. @@ -260,41 +372,10 @@ def open_project_dialog(self, *args, path: pathlib.Path=None) -> QFileDialog: args Consume positional arguments, some buttons connected to this slot will pass a 'checked' boolean flag which is not applicable here. - path : :class:`pathlib.Path` - Path to a directory containing a dgp json project file. - Used to programmatically load a project (without launching the - FileDialog). - - Returns - ------- - QFileDialog - Reference to QFileDialog file-browser dialog when called with no - path argument. """ - - def _project_selected(directory): - prj_dir = pathlib.Path(directory[0]) - prj_file = get_project_file(prj_dir) - if prj_file is None: - self.log.warning("No valid DGP project file found in directory") - return - with prj_file.open('r') as fd: - project = AirborneProject.from_json(fd.read()) - if project.uid in [p.uid for p in self.model.projects]: - self.log.warning("Project is already opened") - else: - control = AirborneProjectController(project, path=prj_dir) - self.model.add_project(control) - self.save_projects() - - if path is not None: - _project_selected([path]) - else: # pragma: no cover - dialog = QFileDialog(self, "Open Project", str(self.import_base_path)) - dialog.setFileMode(QFileDialog.DirectoryOnly) - dialog.setViewMode(QFileDialog.List) - dialog.accepted.connect(lambda: _project_selected(dialog.selectedFiles())) - dialog.setModal(True) - dialog.show() - return dialog + dialog = QFileDialog(self, "Open Project", str(self.import_base_path)) + dialog.setFileMode(QFileDialog.DirectoryOnly) + dialog.setViewMode(QFileDialog.List) + dialog.fileSelected.connect(lambda file: self.open_project(Path(file))) + dialog.exec_() diff --git a/tests/test_gui_main.py b/tests/test_gui_main.py index efd634b..9a406cc 100644 --- a/tests/test_gui_main.py +++ b/tests/test_gui_main.py @@ -22,20 +22,18 @@ @pytest.fixture -def flt_ctrl(prj_ctrl: AirborneProjectController): - return prj_ctrl.get_child(prj_ctrl.datamodel.flights[0].uid) - - -@pytest.fixture -def window(prj_ctrl): - return MainWindow(prj_ctrl) +def window(project) -> MainWindow: + window = MainWindow() + window.add_project(project) + yield window + window.close() -def test_MainWindow_load(window): +def test_MainWindow_load(window, project): assert isinstance(window, QMainWindow) assert not window.isVisible() - window.load() + window.load(project) assert window.isVisible() assert not window.isWindowModified() @@ -43,14 +41,15 @@ def test_MainWindow_load(window): assert not window.isVisible() -def test_MainWindow_tab_open_requested(flt_ctrl: FlightController, - window: MainWindow): +def test_MainWindow_tab_open_requested(project, window): assert isinstance(window.model, ProjectTreeModel) tab_open_spy = QSignalSpy(window.model.tabOpenRequested) assert 0 == len(tab_open_spy) assert 0 == window.workspace.count() + flt_ctrl = window.model.active_project.get_child(project.flights[0].uid) + assert isinstance(flt_ctrl, FlightController) assert window.workspace.get_tab(flt_ctrl.uid) is None @@ -64,12 +63,13 @@ def test_MainWindow_tab_open_requested(flt_ctrl: FlightController, assert 1 == window.workspace.count() -def test_MainWindow_tab_close_requested(flt_ctrl: AirborneProjectController, - window: MainWindow): +def test_MainWindow_tab_close_requested(project, window): tab_close_spy = QSignalSpy(window.model.tabCloseRequested) assert 0 == len(tab_close_spy) assert 0 == window.workspace.count() + flt_ctrl = window.model.active_project.get_child(project.flights[0].uid) + window.model.item_activated(flt_ctrl.index()) assert 1 == window.workspace.count() @@ -140,22 +140,24 @@ def test_MainWindow_open_project_dialog(window: MainWindow, project_factory, tmp assert window.model.active_project.path != prj2_ctrl.path assert 1 == window.model.rowCount() - window.open_project_dialog(path=prj2.path) + window.open_project(path=prj2.path, prompt=False) assert 2 == window.model.rowCount() # Try to open an already open project - window.open_project_dialog(path=prj2.path) + window.open_project(path=prj2.path, prompt=False) assert 2 == window.model.rowCount() - window.open_project_dialog(path=tmpdir) + with pytest.raises(FileNotFoundError): + window.open_project(path=Path(tmpdir), prompt=False) assert 2 == window.model.rowCount() -def test_MainWindow_progress_event_handler(window: MainWindow, - flt_ctrl: FlightController): +def test_MainWindow_progress_event_handler(project, window): model: ProjectTreeModel = window.model progressEventRequested_spy = QSignalSpy(model.progressNotificationRequested) + flt_ctrl = window.model.active_project.get_child(project.flights[0].uid) + prog_event = ProgressEvent(flt_ctrl.uid, label="Loading Data Set") assert flt_ctrl.uid == prog_event.uid assert not prog_event.completed From 2ab21393189461766de1207949cbb0475055552b Mon Sep 17 00:00:00 2001 From: Zachery Brady Date: Mon, 13 Aug 2018 12:49:04 -0600 Subject: [PATCH 203/236] Add public utility methods to backends/plotters Add autorange method to GridPlotWidget to allow external callers to auto-range every plot within the widget. Refactor LineSelectPlot's selection_mode property to allow for signal connection. --- dgp/gui/plotting/backends.py | 5 +++++ dgp/gui/plotting/plotters.py | 7 +++---- tests/test_plots.py | 4 ++-- 3 files changed, 10 insertions(+), 6 deletions(-) diff --git a/dgp/gui/plotting/backends.py b/dgp/gui/plotting/backends.py index 8ee9fd1..e4b0d65 100644 --- a/dgp/gui/plotting/backends.py +++ b/dgp/gui/plotting/backends.py @@ -348,6 +348,11 @@ def plots(self) -> Generator[DgpPlotItem, None, None]: def pen(self): return next(self._pens) + def autorange(self): + """Call auto-range on all plots in the GridPlotWidget""" + for plot in self.plots: + plot.autoRange() + def get_plot(self, row: int, col: int = 0, axis: Axis = Axis.LEFT) -> MaybePlot: plot: DgpPlotItem = self.gl.getItem(row, col) if axis is Axis.RIGHT: diff --git a/dgp/gui/plotting/plotters.py b/dgp/gui/plotting/plotters.py index 9441b5d..37573ce 100644 --- a/dgp/gui/plotting/plotters.py +++ b/dgp/gui/plotting/plotters.py @@ -67,11 +67,10 @@ def __init__(self, rows=1, parent=None): def selection_mode(self): return self._selecting - @selection_mode.setter - def selection_mode(self, value): - self._selecting = bool(value) + def set_select_mode(self, mode: bool): + self._selecting = mode for group in self._segments.values(): - group.set_movable(self._selecting) + group.set_movable(mode) def add_segment(self, start: float, stop: float, label: str = None, uid: OID = None, emit=True) -> LinearSegmentGroup: diff --git a/tests/test_plots.py b/tests/test_plots.py index 9d08abe..44bf83d 100644 --- a/tests/test_plots.py +++ b/tests/test_plots.py @@ -331,7 +331,7 @@ def test_LineSelectPlot_init(): def test_LineSelectPlot_selection_mode(): plot = LineSelectPlot(rows=3) assert not plot.selection_mode - plot.selection_mode = True + plot.set_select_mode(True) assert plot.selection_mode plot.add_segment(datetime.now().timestamp(), @@ -342,7 +342,7 @@ def test_LineSelectPlot_selection_mode(): for lfr_grp in plot._segments.values(): # type: LinearSegmentGroup assert lfr_grp.movable - plot.selection_mode = False + plot.set_select_mode(False) for lfr_grp in plot._segments.values(): assert not lfr_grp.movable From d63f7b966951454424ca400142816dac97a31449 Mon Sep 17 00:00:00 2001 From: Zachery Brady Date: Mon, 13 Aug 2018 19:42:03 -0600 Subject: [PATCH 204/236] Update docstrings, finish sphinx plotting documentation page Update, add, and edit docstrings on various plotting API methods/classes. Fix various class/function links in RST documentation pages. Add missing classes/attributes to sphinx plotting page. --- dgp/gui/plotting/backends.py | 275 +++++++++++++++++++++++++---------- dgp/gui/plotting/helpers.py | 118 +++++++++------ dgp/gui/plotting/plotters.py | 70 ++++++--- docs/requirements.txt | 4 +- docs/source/gui/plotting.rst | 33 +++++ 5 files changed, 363 insertions(+), 137 deletions(-) diff --git a/dgp/gui/plotting/backends.py b/dgp/gui/plotting/backends.py index e4b0d65..34bebe3 100644 --- a/dgp/gui/plotting/backends.py +++ b/dgp/gui/plotting/backends.py @@ -18,11 +18,13 @@ class AxisFormatter(Enum): + """Enumeration defining axis formatter types""" DATETIME = auto() SCALAR = auto() class Axis(Enum): + """Enumeration of selectable plot axis' Left/Right""" LEFT = 'left' RIGHT = 'right' @@ -34,7 +36,7 @@ class Axis(Enum): # type aliases MaybePlot = Union['DgpPlotItem', None] MaybeSeries = Union[pd.Series, None] -PlotIndex = Tuple[str, int, int, Axis] +SeriesIndex = Tuple[str, int, int, Axis] class _CustomPlotControl(QWidget, Ui_PlotOptions): @@ -66,20 +68,26 @@ def action(self) -> QWidgetAction: class LinkedPlotItem(PlotItem): """LinkedPlotItem creates a twin plot linked to the right y-axis of the base - This class is used by DgpPlotItem to enable plots which have a second - y-axis scale in order to display two (or potentially more) Series on the - same plot with different magnitudes. + This class is used by DgpPlotItem to enable plots which have a dual y-axis + scale in order to display two (or potentially more) Series on the same plot + with different magnitudes. + + Parameters + ---------- + base : :class:`pyqtgraph.PlotItem` or :class:`DgpPlotItem` + The base PlotItem which this plot will link itself to Notes ----- - This class is a simple wrapper around a base pyqtgraph PlotItem, it sets + This class is a simple wrapper around a :class:`~pyqtgraph.PlotItem`, it sets some sensible default parameters, and configures itself to link its x-axis to the specified 'base' PlotItem, and finally inserts itself into the layout container of the parent plot. + Also note that the linked plot does not use its own independent legend, it links its legend attribute to the base plot's legend (so that legend - add/remove actions can be performed without validating the specific plot - reference). + add/remove actions can be performed without validating or looking up the + explicit base plot reference). """ def __init__(self, base: PlotItem): @@ -100,11 +108,12 @@ def __init__(self, base: PlotItem): class DgpPlotItem(PlotItem): - """Custom PlotItem derived from pyqtgraph's :class:`PlotItem` + """Custom PlotItem derived from pyqtgraph's :class:`~pyqtgraph.PlotItem` The primary focus of this custom PlotItem is to override the default 'Plot Options' sub-menu provided by PlotItem for context-menu (right-click) events on the plot surface. + Secondarily this class provides a simple way to create/enable a secondary y-axis, for plotting multiple data curves of differing magnitudes. @@ -124,11 +133,12 @@ class DgpPlotItem(PlotItem): Curves can be plotted to the second (right axis) plot using the 'right' property kwargs - See valid parameters for :class:`PlotItem` + See valid kwargs for :class:`~pyqtgraph.PlotItem` Notes ----- Custom menu functionality provided: + - Plot curve alpha (transparency) setting - Grid line visibility (on/off/transparency) - Average curve (on/off) @@ -184,15 +194,41 @@ def __init__(self, multiy: bool = False, **kwargs): @property def left(self) -> 'DgpPlotItem': + """@property: Return the primary plot (self). This is an identity + property and is provided for symmetry with the `right` property. + + Returns + ------- + :class:`DgpPlotItem` + Left axis plot surface (self) + + """ return self @property def right(self) -> MaybePlot: - """Return the sibling plot linked to the right y-axis (if it exists)""" + """@property: Return the sibling plot linked to the right y-axis + (if it exists). + + Returns + ------- + :class:`LinkedPlotItem` + Right axis plot surface if it is enabled/created, else :const:`None` + + """ return self._right + def autoRange(self, *args, **kwargs): + """Overrides :meth:`pyqtgraph.ViewBox.autoRange` + + Auto-fit left/right plot :class:`~pyqtgraph.ViewBox` to curve data limits + """ + self.vb.autoRange(items=self.curves) + if self.right is not None: + self.right.vb.autoRange(items=self.right.curves) + def clearPlots(self): - """Override PlotItem::clearPlots + """Overrides :meth:`pyqtgraph.PlotItem.clearPlots` Clear all curves from left and right plots, as well as removing any legend entries. @@ -207,12 +243,12 @@ def clearPlots(self): self.legend.removeItem(c.name()) self.right.removeItem(c) - def autoRange(self, *args, **kwargs): - self.vb.autoRange(items=self.curves) - if self.right is not None: - self.right.vb.autoRange(items=self.right.curves) - def updateAlpha(self, *args): + """Overrides :meth:`pyqtgraph.PlotItem.updateAlpha` + + Override the base implementation to update alpha value of curves on the + right plot (if it is enabled) + """ super().updateAlpha(*args) if self.right is not None: alpha, auto_ = self.alphaState() @@ -220,7 +256,7 @@ def updateAlpha(self, *args): c.setAlpha(alpha**2, auto_) def updateDownsampling(self): - """Override PlotItem::updateDownsampling + """Extends :meth:`pyqtgraph.PlotItem.updateDownsampling` Override the base implementation in order to effect updates on the right plot (if it is enabled). @@ -232,12 +268,11 @@ def updateDownsampling(self): c.setDownsampling(ds, auto_, method) def downsampleMode(self): - """Override PlotItem::downsampleMode + """Overrides :meth:`pyqtgraph.PlotItem.downsampleMode` Called by updateDownsampling to get control state. Our custom implementation does not allow for all of the options that the original does. - """ if self.ctrl.downsampleCheck.isChecked(): ds = self.ctrl.downsampleSpin.value() @@ -246,6 +281,12 @@ def downsampleMode(self): return ds, False, 'subsample' def updateGrid(self, *args): + """Overrides :meth:`pyqtgraph.PlotItem.updateGrid` + + This method provides special handling of the left/right axis grids. + The plot custom control allows the user to show/hide either the left + or right y-axis grid lines independently. + """ alpha = self.customControl.gridAlphaSlider.value() x = alpha if self.customControl.xGridCheck.isChecked() else False y = alpha if self.customControl.yGridCheck.isChecked() else False @@ -264,8 +305,9 @@ def getContextMenus(self, event): class GridPlotWidget(GraphicsView): """ - Base plotting class used to create a group of 1 or more :class:`PlotItem` - in a layout (rows/columns). + Base plotting class used to create a group of one or more + :class:`pyqtgraph.PlotItem` in a layout + (rows/columns). This class is a subclass of :class:`QWidget` and can be directly added to a QtWidget based application. @@ -280,8 +322,8 @@ class aims to simplify the API for our use cases, and add functionality for Rows of plots to generate (stacked from top to bottom), default is 1 background : Optional Background color for the widget and nested plots. Can be any value - accepted by :func:`mkBrush` or :func:`mkColor` e.g. QColor, hex string, - RGB(A) tuple + accepted by :func:`pyqtgraph.mkBrush` or :func:`pyqtgraph.mkColor` + e.g. QColor, hex string, RGB(A) tuple grid : bool If True displays gridlines on the plot surface sharex : bool @@ -290,19 +332,19 @@ class aims to simplify the API for our use cases, and add functionality for If True all plots will have a sister plot with its own y-axis and scale enabling the plotting of 2 (or more) Series with differing scales on a single plot surface. - parent + parent : QWidget, optional + Optional QWidget parent for the underlying QGraphicsView object Notes ----- The GridPlotWidget explicitly disables the :class:`pyqtgraph.GraphicsScene` - 'Export' context menu action, as the export dialog is not fully suitable for - our purposes. Similar functionality may be added to the application later, - but not via the plotting interface. + 'Export' context menu action, as the default pyqtgraph export dialog is not + stable and causes runtime errors in various contexts. See Also -------- - :func:`pyqtgraph.functions.mkPen` for customizing plot-line pens (creates a QgGui.QPen) - :func:`pyqtgraph.functions.mkColor` for color options in the plot (creates a QtGui.QColor) + :func:`pyqtgraph.mkPen` for customizing plot-line pens (creates a QgGui.QPen) + :func:`pyqtgraph.mkColor` for color options in the plot (creates a QtGui.QColor) """ def __init__(self, rows=1, cols=1, background='w', grid=True, sharex=False, @@ -311,7 +353,7 @@ def __init__(self, rows=1, cols=1, background='w', grid=True, sharex=False, self.gl = GraphicsLayout(parent=parent) self.setCentralItem(self.gl) - # Remove the 'Export' option from the scene context menu + # Clear the 'Export' action from the scene context menu self.sceneObj.contextMenu = [] self.rows = rows @@ -321,39 +363,69 @@ def __init__(self, rows=1, cols=1, background='w', grid=True, sharex=False, self._pens = cycle([{'color': v, 'width': 1} for v in LINE_COLORS]) # Maintain weak references to Series/PlotDataItems for lookups - self._series: Dict[PlotIndex: pd.Series] = WeakValueDictionary() - self._items: Dict[PlotIndex: PlotDataItem] = WeakValueDictionary() + self._series: Dict[SeriesIndex: pd.Series] = WeakValueDictionary() + self._items: Dict[SeriesIndex: PlotDataItem] = WeakValueDictionary() - col = 0 for row in range(self.rows): - axis_items = {'bottom': PolyAxis(orientation='bottom', - timeaxis=timeaxis)} - plot = DgpPlotItem(background=background, axisItems=axis_items, - multiy=multiy) - self.gl.addItem(plot, row=row, col=col) - plot.clear() - plot.showGrid(x=grid, y=grid) - - if row > 0 and sharex: - plot.setXLink(self.get_plot(0, 0)) + for col in range(self.cols): + axis_items = {'bottom': PolyAxis(orientation='bottom', + timeaxis=timeaxis)} + plot = DgpPlotItem(background=background, axisItems=axis_items, + multiy=multiy) + self.gl.addItem(plot, row=row, col=col) + plot.clear() + plot.showGrid(x=grid, y=grid) + + if row > 0 and sharex: + plot.setXLink(self.get_plot(0, 0)) self.__signal_proxies = [] @property def plots(self) -> Generator[DgpPlotItem, None, None]: + """Yields each plot by row in this GridPlotWidget + + Yields + ------ + :class:`.DgpPlotItem` + + Warnings + -------- + This property does not yet account for GridPlotWidgets with more than a + single column. + Also note that it will not yield RIGHT plots, only the base LEFT plot. + """ for i in range(self.rows): yield self.get_plot(i, 0) @property def pen(self): + """Return the next pen parameters in the cycle""" return next(self._pens) def autorange(self): - """Call auto-range on all plots in the GridPlotWidget""" + """Calls auto-range on all plots in the GridPlotWidget""" for plot in self.plots: plot.autoRange() def get_plot(self, row: int, col: int = 0, axis: Axis = Axis.LEFT) -> MaybePlot: + """Get the DgpPlotItem within this GridPlotWidget specified by row/col/axis + + Parameters + ---------- + row : int + col : int, optional + Column index of the plot to retrieve, optional, default is 0 + axis : Axis, optional + Select the LEFT or RIGHT axis plot, optional, default is Axis.LEFT + + Returns + ------- + :data:`~.MaybePlot` + :class:`DgpPlotItem` if a plot exists at the given row/col/axis + else :const:`None` + + """ plot: DgpPlotItem = self.gl.getItem(row, col) if axis is Axis.RIGHT: return plot.right @@ -379,7 +451,8 @@ def add_series(self, series: pd.Series, row: int, col: int = 0, Returns ------- - PlotItem + :class:`pyqtgraph.PlotItem` + The generated PlotItem or derivative created from the data Raises ------ @@ -388,47 +461,69 @@ def add_series(self, series: pd.Series, row: int, col: int = 0, but multiy is not enabled. """ - key = self.make_index(series.name, row, col, axis) - if self._items.get(key, None) is not None: - return self._items[key] + index = self.make_index(series.name, row, col, axis) + if self._items.get(index, None) is not None: + return self._items[index] - self._series[key] = series + self._series[index] = series plot = self.get_plot(row, col, axis) xvals = pd.to_numeric(series.index, errors='coerce') yvals = pd.to_numeric(series.values, errors='coerce') item = plot.plot(x=xvals, y=yvals, name=series.name, pen=self.pen) - self._items[key] = item + self._items[index] = item if autorange: plot.autoRange() return item - def get_series(self, name: str, row, col=0, axis: Axis = Axis.LEFT) -> MaybeSeries: + def get_series(self, name: str, row: int, col: int = 0, + axis: Axis = Axis.LEFT) -> MaybeSeries: + """Get the pandas.Series data for a plotted series + + Parameters + ---------- + name : str + row, col : int + Row/column index of the plot where target series is plotted. + Column is optional, default is 0 + axis : :data:`Axis`, optional + Plot axis where the series is plotted (LEFT or RIGHT), defaults to + :data:`Axis.LEFT` + + Returns + ------- + :data:`MaybeSeries` + Returns a :class:`pandas.Series` object if the series is found with + the specified parameters or else returns :const:`None` + + """ idx = self.make_index(name, row, col, axis) return self._series.get(idx, None) def remove_series(self, name: str, row: int, col: int = 0, axis: Axis = Axis.LEFT, autorange: bool = True) -> None: - """Remove a named series from the plot at the specified row/col/axis + """Remove a named series from the plot at the specified row/col/axis. Parameters ---------- name : str row : int col : int, optional - axis : Axis, optional + Defaults to 0 + axis : :data:`Axis`, optional + Defaults to :data:`Axis.LEFT` autorange : bool, optional - Readjust plot x/y view limits after removing the series + Auto-range plot x/y view after removing the series, default True """ plot = self.get_plot(row, col, axis) - key = self.make_index(name, row, col, axis) - plot.removeItem(self._items[key]) + index = self.make_index(name, row, col, axis) + plot.removeItem(self._items[index]) plot.legend.removeItem(name) if autorange: plot.autoRange() - def clear(self): - """Clear all plot curves from all plots""" + def clear(self) -> None: + """Clear all plot data curves from all plots""" for i in range(self.rows): for j in range(self.cols): plot = self.get_plot(i, j) @@ -443,13 +538,14 @@ def clear(self): plot_r.removeItem(curve) def remove_plotitem(self, item: PlotDataItem) -> None: - """Alternative method of removing a line by its :class:`PlotDataItem` - reference, as opposed to using remove_series to remove a named series - from a specific plot at row/col index. + """Alternative method of removing a line by its + :class:`pyqtgraph.PlotDataItem` reference, as opposed to using + remove_series to remove a named series from a specific plot at row/col + index. Parameters ---------- - item : :class:`PlotDataItem` + item : :class:`~pyqtgraph.PlotDataItem` The PlotDataItem reference to be removed from whichever plot it resides @@ -460,9 +556,9 @@ def remove_plotitem(self, item: PlotDataItem) -> None: plot.legend.removeItem(item.name()) plot.removeItem(item) - def find_series(self, name: str) -> List[PlotIndex]: + def find_series(self, name: str) -> List[SeriesIndex]: """Find and return a list of all plot indexes where a series with - 'name' is plotted + 'name' is plotted. Parameters ---------- @@ -471,8 +567,9 @@ def find_series(self, name: str) -> List[PlotIndex]: Returns ------- - List of PlotIndex + List of :data:`SeriesIndex` List of Series indexes, see :func:`make_index` + If no indexes are found an empty list is returned """ indexes = [] @@ -492,13 +589,11 @@ def set_xaxis_formatter(self, formatter: AxisFormatter, row: int, col: int = 0): Parameters ---------- - formatter : str - 'datetime' will set the bottom AxisItem to display datetime values - Any other value will set the AxisItem to its default scalar display + formatter : :data:`AxisFormatter` row : int Plot row index - col : int - Plot column index + col : int, optional + Plot column index, optional, defaults to 0 """ plot = self.get_plot(row, col) @@ -506,12 +601,19 @@ def set_xaxis_formatter(self, formatter: AxisFormatter, row: int, col: int = 0): axis.timeaxis = formatter is AxisFormatter.DATETIME def get_xlim(self, row: int, col: int = 0) -> Tuple[float, float]: - """Get the x-limits (span) for the plot at row/col + """Get the x-limits (left-right span) for the plot ViewBox at the + specified row/column. + + Parameters + ---------- + row : int + col : int, optional + Plot column index, optional, defaults to 0 Returns ------- - tuple of float, float - Tuple of minimum/maximum x-values (xmin, xmax) + Tuple (float, float) + 2-Tuple of minimum/maximum x-limits of the current view (xmin, xmax) """ return self.get_plot(row, col).vb.viewRange()[0] @@ -524,8 +626,10 @@ def set_xlink(self, linked: bool = True, autorange: bool = False): linked : bool, Optional If True sets all plots to link x-axis scales with plot 0, 0 If False, un-links all plot x-axis' + Default is True (enable x-link) autorange : bool, Optional - If True automatically re-scale the view box after linking/unlinking + If True automatically re-scale the view box after linking/unlinking. + Default is False """ base = self.get_plot(0, 0) if linked else None @@ -542,7 +646,7 @@ def add_onclick_handler(self, slot, ratelimit: int = 60): # pragma: no cover Parameters ---------- slot : pyqtSlot(MouseClickEvent) - pyqtSlot accepting a :class:`MouseClickEvent` + pyqtSlot accepting a :class:`pyqtgraph.MouseClickEvent` ratelimit : int, optional Limit the SignalProxy to an emission rate of `ratelimit` signals/sec @@ -553,7 +657,7 @@ def add_onclick_handler(self, slot, ratelimit: int = 60): # pragma: no cover return sp @staticmethod - def make_index(name: str, row: int, col: int = 0, axis: Axis = Axis.LEFT) -> PlotIndex: + def make_index(name: str, row: int, col: int = 0, axis: Axis = Axis.LEFT) -> SeriesIndex: """Generate an index referring to a specific plot curve Plot curves (items) can be uniquely identified within the GridPlotWidget @@ -561,6 +665,25 @@ def make_index(name: str, row: int, col: int = 0, axis: Axis = Axis.LEFT) -> Plo A plot item can only be plotted once on a given plot, so the index is guaranteed to be unique for the specific named item. + Parameters + ---------- + name : str + Name for the data series this index refers to. Note that the name + value is automatically lower-cased, and as such two indexes created + with differently cased but identical names will be equivalent when + all other properties are the same. + row, col : int + Row/column plot index (col is optional, defaults to 0) + axis : Axis, optional + Optionally specify the plot axis this index is for (LEFT or RIGHT), + defaults to Axis.LEFT + + Returns + ------- + :data:`SeriesIndex` + A :data:`SeriesIndex` tuple of (str, int, int, Axis) corresponding + to: (name, row, col, Axis) + Raises ------ :exc:`ValueError` diff --git a/dgp/gui/plotting/helpers.py b/dgp/gui/plotting/helpers.py index 805f7fa..6f3c33d 100644 --- a/dgp/gui/plotting/helpers.py +++ b/dgp/gui/plotting/helpers.py @@ -29,8 +29,20 @@ class PolyAxis(AxisItem): timeaxis : bool, optional Enable the time-axis formatter, default is False kwargs - See :class:`~pyqtgraph.graphicsItems.AxisItem.AxisItem` for allowed - kwargs + See :class:`pyqtgraph.AxisItem` for permitted kwargs + + Attributes + ---------- + timeaxis : bool + If True format tick strings by their date values, + If False use the default scalar formatter + + See Also + -------- + :class:`pyqtgraph.AxisItem` + :meth:`pyqtgraph.AxisItem.tickStrings` + :meth:`pyqtgraph.AxisItem.tickSpacing` + :meth:`pyqtgraph.AxisItem.tickValues` """ def __init__(self, orientation='bottom', timeaxis=False, **kwargs): @@ -53,12 +65,13 @@ def dateTickStrings(self, values, spacing): Parameters ---------- values : List + List of values to generate tick strings for spacing : float Returns ------- List[str] - List of string labels corresponding to each input value. + List of labels corresponding to each input value. """ # Select the first formatter where the scale (sec/min/hour/day etc) is @@ -97,7 +110,7 @@ def tickStrings(self, values, scale, spacing): Parameters ---------- values : List - List of values to return strings for + List of values to generate tick strings for scale : Scalar Used to specify the scale of the values, useful when the axis label is configured to show the display as some SI fraction (e.g. milli), @@ -116,7 +129,8 @@ def tickStrings(self, values, scale, spacing): where multiple tick-levels are defined i.e. Major/Minor/Sub-Minor ticks. The range of the values may also differ between invocations depending on the positioning of the chart. And the spacing will be different - dependent on how the ticks were placed by the tickSpacing() method. + dependent on how the ticks were placed by the + :meth:`pyqtgraph.AxisItem.tickSpacing` method. """ if self.timeaxis: @@ -130,27 +144,38 @@ class LinearSegment(LinearRegionItem): Parameters ---------- - plot : :class:`PlotItem` - values : tuple of float, float + plot : :class:`~pyqtgraph.PlotItem` or :class:`.DgpPlotItem` + PlotItem to add the LinearSegment to + left, right : float Initial left/right values for the segment - uid : :class:`~dgp.core.OID` label : str, optional + Set the initial label text for this segment + movable : bool, optional + Set the initial movable/editable state of the LinearSegment + + Attributes + ---------- + sigLabelChanged : :class:`~pyqt.pyqtSignal` ( :class:`str` ) + Emitted when the label text of this segment has changed + sigDeleteRequested : :class:`~pyqt.pyqtSignal` () + Emitted when a delete action is triggered for this segment """ sigLabelChanged = pyqtSignal(str) - sigDeleteRequested = pyqtSignal(object) + sigDeleteRequested = pyqtSignal() - def __init__(self, plot: PlotItem, values, label=None, - brush=None, movable=False, bounds=None): - super().__init__(values=values, orientation=LinearRegionItem.Vertical, - brush=brush, movable=movable, bounds=bounds) + def __init__(self, plot: PlotItem, left, right, label=None, movable=False): + super().__init__(values=(left, right), + orientation=LinearRegionItem.Vertical, + movable=movable, brush=None, bounds=None) self._plot = weakref.ref(plot) self._label = TextItem(text=label or '', color=(0, 0, 0), anchor=(0, 0)) self._update_label_pos() + self.sigRegionChanged.connect(self._update_label_pos) + self._menu = QMenu() - self._menu.addAction('Remove', lambda: self.sigDeleteRequested.emit(self)) + self._menu.addAction('Remove', lambda: self.sigDeleteRequested.emit()) self._menu.addAction('Set Label', self._get_label_dlg) - self.sigRegionChanged.connect(self._update_label_pos) plot.addItem(self) plot.addItem(self._label) @@ -158,6 +183,7 @@ def __init__(self, plot: PlotItem, values, label=None, @property def label_text(self) -> str: + """@property Returns the current plain-text of the segment's label""" return self._label.textItem.toPlainText() @label_text.setter @@ -192,18 +218,22 @@ def mouseClickEvent(self, ev: MouseClickEvent): return super().mouseClickEvent(ev) def y_rng_changed(self, vb, ylims): # pragma: no cover - """Update label position on change of ViewBox y-limits""" + """:class:`pyqtSlot`: Update label position on change of ViewBox y-limits""" x = self._label.pos()[0] y = ylims[1] self._label.setPos(x, y) def _update_label_pos(self): - """Update label position to new segment/view bounds""" + """:class:`pyqtSlot`: Update label position to new segment/view bounds""" x0, _ = self.getRegion() _, y1 = self._plot().viewRange()[1] self._label.setPos(x0, y1) def _get_label_dlg(self): # pragma: no cover + """:class:`pyqtSlot`: Popup an Input Dialog to take user string input + + Emits sigLabelChanged(str) with the result of the accepted dialog value + """ # TODO: Assign parent or create dialog with Icon text, result = QInputDialog.getText(None, "Enter Label", "Segment Label:", text=self.label_text) @@ -263,7 +293,7 @@ def __init__(self, plots: Iterable[PlotItem], uid: OID, self._timer.timeout.connect(self._update_done) for plot in plots: - segment = LinearSegment(plot, (left, right), label=label, + segment = LinearSegment(plot, left, right, label=label, movable=movable) segment.sigRegionChanged.connect(self._update_region) segment.sigLabelChanged.connect(self._update_label) @@ -280,6 +310,7 @@ def right(self) -> pd.Timestamp: @property def region(self) -> Tuple[float, float]: + """Return the left/right region bounds of the group""" for segment in self._segments: return segment.getRegion() @@ -292,14 +323,39 @@ def label_text(self) -> str: return self._label_text def set_movable(self, movable: bool): + """Set the movable property of the segments in this group""" for segment in self._segments: segment.setMovable(movable) + def delete(self): + """Delete all child segments and emit a DELETE update""" + for segment in self._segments: + segment.remove() + self.emit_update(StateAction.DELETE) + + def emit_update(self, action: StateAction = StateAction.UPDATE): + """Emit a LineUpdate object with the current segment attributes + + Creates and emits a LineUpdate named-tuple with the current left and + right x-values of the segment, and the current label-text. + + Parameters + ---------- + action : StateAction, optional + Optionally specify the action for the update, defaults to UPDATE. + Use this parameter to trigger a DELETE action for instance. + + """ + update = LineUpdate(action, self._uid, self.left, self.right, + self._label_text) + self.sigSegmentUpdate.emit(update) + def _update_label(self, label: str): + """Updates the label text on all sibling segments and emits an update""" for segment in self._segments: segment.label_text = label self._label_text = label - self._emit_update(StateAction.UPDATE) + self.emit_update(StateAction.UPDATE) def _update_region(self, segment: LinearSegment): """Update sibling segments to new region bounds""" @@ -315,27 +371,5 @@ def _update_region(self, segment: LinearSegment): def _update_done(self): """Emit an update object when the rate-limit timer has expired""" self._timer.stop() - self._emit_update(StateAction.UPDATE) - - def delete(self): - """Delete all child segments and emit a DELETE update""" - for segment in self._segments: - segment.remove() - self._emit_update(StateAction.DELETE) - - def _emit_update(self, action: StateAction = StateAction.UPDATE): - """Emit a LineUpdate object with the current segment parameters + self.emit_update(StateAction.UPDATE) - Creates and emits a LineUpdate named-tuple with the current left and - right x-values of the segment, and the current label-text. - - Parameters - ---------- - action : StateAction, optional - Optionally specify the action for the update, defaults to UPDATE. - Use this parameter to trigger a DELETE action for instance. - - """ - update = LineUpdate(action, self._uid, self.left, self.right, - self._label_text) - self.sigSegmentUpdate.emit(update) diff --git a/dgp/gui/plotting/plotters.py b/dgp/gui/plotting/plotters.py index 37573ce..d03d725 100644 --- a/dgp/gui/plotting/plotters.py +++ b/dgp/gui/plotting/plotters.py @@ -5,6 +5,7 @@ import pandas as pd from PyQt5.QtCore import pyqtSignal, Qt from pyqtgraph import Point +from pyqtgraph.GraphicsScene.mouseEvents import MouseClickEvent from dgp.core import StateAction from dgp.core.oid import OID @@ -16,7 +17,7 @@ _log = logging.getLogger(__name__) """ -Task specific Plotting Interface definitions. +Task specific Plotting Class definitions. This module adds various Plotting classes based on :class:`GridPlotWidget` which are tailored for specific tasks, e.g. the LineSelectPlot provides methods @@ -51,7 +52,22 @@ def set_axis_formatters(self, formatter: AxisFormatter): class LineSelectPlot(GridPlotWidget): - """LineSelectPlot + """LineSelectPlot is a task specific plot widget which provides the user + with a click/drag interaction allowing them to create and edit data + 'segments' visually on the plot surface. + + Parameters + ---------- + rows : int, optional + Number of rows of linked plots to create, default is 1 + parent : QWidget, optional + + Attributes + ---------- + sigSegmentChanged : :class:`~pyqt.pyqtSignal` [ :class:`LineUpdate` ] + Qt Signal emitted whenever a data segment (LinearSegment) is created, + modified, or deleted. + Emits a :class:`.LineUpdate` """ sigSegmentChanged = pyqtSignal(LineUpdate) @@ -64,19 +80,28 @@ def __init__(self, rows=1, parent=None): self.add_onclick_handler(self.onclick) @property - def selection_mode(self): + def selection_mode(self) -> bool: + """@property Return the current selection mode state + + Returns + ------- + bool + True if selection mode is enabled, else False + """ return self._selecting - def set_select_mode(self, mode: bool): + def set_select_mode(self, mode: bool) -> None: + """Set the selection mode of the LineSelectPlot + + """ self._selecting = mode for group in self._segments.values(): group.set_movable(mode) def add_segment(self, start: float, stop: float, label: str = None, - uid: OID = None, emit=True) -> LinearSegmentGroup: - """ - Add a LinearSegment selection across all linked x-axes - With width ranging from start:stop and an optional label. + uid: OID = None, emit: bool = True) -> LinearSegmentGroup: + """Add a LinearSegment selection across all linked x-axes with width + ranging from start -> stop with an optional label. To non-interactively add a segment group (e.g. when loading a saved project) this method should be called with the uid parameter, and emit @@ -86,15 +111,20 @@ def add_segment(self, start: float, stop: float, label: str = None, ---------- start : float stop : float - label : str, Optional + label : str, optional Optional text label to display within the segment on the plot - uid : :class:`OID`, Optional + uid : :class:`.OID`, optional Specify the uid of the segment group, used for re-creating segments when loading a plot - emit : bool, Optional + emit : bool, optional If False, sigSegmentChanged will not be emitted on addition of the segment + Returns + ------- + :class:`.LinearSegmentGroup` + A reference to the newly created :class:`.LinearSegmentGroup` + """ if isinstance(start, pd.Timestamp): start = start.value @@ -115,14 +145,21 @@ def add_segment(self, start: float, stop: float, label: str = None, return group def get_segment(self, uid: OID) -> LinearSegmentGroup: + """Get a :class:`.LinearSegmentGroup` by its :class:`.OID` + + Returns + ------- + :class:`.LinearSegmentGroup` or :const:`None` + The Segment group by the given OID if it exists, else None + """ return self._segments.get(uid, None) def onclick(self, ev): # pragma: no cover """Onclick handler for mouse left/right click. - Create a new data-segment if _selection_mode is True on left-click + Creates a new data-segment if :attr:`.selection_mode` is True on left-click """ - event = ev[0] + event: MouseClickEvent = ev[0] try: pos: Point = event.pos() except AttributeError: @@ -151,8 +188,7 @@ def onclick(self, ev): # pragma: no cover self.add_segment(start, stop) def _check_proximity(self, x, span, proximity=0.03) -> bool: - """ - Check the proximity of a mouse click at location 'x' in relation to + """Check the proximity of a mouse click at location 'x' in relation to any already existing LinearRegions. Parameters @@ -162,12 +198,12 @@ def _check_proximity(self, x, span, proximity=0.03) -> bool: span : float X-axis span of the view box proximity : float - Proximity as a percentage of the view box span + Proximity as a percentage of the ViewBox span Returns ------- True if x is not in proximity to any existing LinearRegionItems - False if x is within or in proximity to an existing LinearRegionItem + False if x is inside or in proximity to an existing LinearRegionItem """ prox = span * proximity diff --git a/docs/requirements.txt b/docs/requirements.txt index f1e73c6..798c2f2 100644 --- a/docs/requirements.txt +++ b/docs/requirements.txt @@ -5,8 +5,8 @@ sphinx_rtd_theme==0.4.0 # Project Requirements matplotlib>=2.0.2 numpy>=1.13.1 -pandas==0.20.3 +pandas==0.23.3 PyQt5==5.11.2 pyqtgraph==0.10.0 -tables==3.4.2 +tables==3.4.4 scipy==1.1.0 diff --git a/docs/source/gui/plotting.rst b/docs/source/gui/plotting.rst index 4d33892..d5086cb 100644 --- a/docs/source/gui/plotting.rst +++ b/docs/source/gui/plotting.rst @@ -26,9 +26,34 @@ specific functionality to the base 'backend' plots, for example to enable graphical click-drag selection of data segments by the user. +Types/Consts/Enums +------------------ .. py:module:: dgp.gui.plotting +.. py:data:: backends.MaybePlot + :annotation: = Union[ DgpPlotItem, None ] + + Typedef for a function which returns a :class:`DgpPlotItem` or :const:`None` + +.. py:data:: backends.MaybeSeries + :annotation: = Union[ pandas.Series, None ] + + Typedef for a function which returns a :class:`pandas.Series` or :const:`None` + +.. py:data:: backends.SeriesIndex + :annotation: = Tuple[ str, int, int, Axis ] + + Typedef for a tuple representing the unique index of a series on a plot + within a :class:`GridPlotWidget` + +.. autoclass:: dgp.gui.plotting.backends.Axis + :undoc-members: + +.. autoclass:: dgp.gui.plotting.backends.AxisFormatter + :undoc-members: + + .. _bases: Bases @@ -38,6 +63,9 @@ Bases :undoc-members: :show-inheritance: +.. autoclass:: dgp.gui.plotting.backends.DgpPlotItem + :show-inheritance: + .. autoclass:: dgp.gui.plotting.backends.LinkedPlotItem :show-inheritance: @@ -62,3 +90,8 @@ Helpers .. autoclass:: dgp.gui.plotting.helpers.LinearSegment :undoc-members: :show-inheritance: + +.. autoclass:: dgp.gui.plotting.helpers.LinearSegmentGroup + :undoc-members: + :show-inheritance: + From 83de30d69a326be7bb268abbf5534e3ca97bc02e Mon Sep 17 00:00:00 2001 From: Zachery Brady Date: Wed, 15 Aug 2018 08:36:02 -0600 Subject: [PATCH 205/236] Add integrated toolbar factory method to plots. The base plotter class (GridPlotWidget) and its descendants now provide a get_toolbar() method which constructs a QToolBar that can be added to a UI layout. The toolbar provides actions that are common to all plots, for example allowing the user to auto-scale the view to fit the data, hide/show grid-lines etc. The toolbar can be extended by descendant classes to add other task specific actions, e.g. the LinePlotWidget adds a toolbar action to toggle its line selection mode. Note that some of the icon definitions (enumerations) added here are placeholders for icons that are added in a separate future feature branch. --- dgp/core/types/enumerations.py | 11 +++++ dgp/gui/plotting/backends.py | 52 +++++++++++++++++++-- dgp/gui/plotting/plotters.py | 13 ++++++ dgp/gui/workspaces/PlotTab.py | 73 +++++++++--------------------- dgp/gui/workspaces/TransformTab.py | 7 ++- 5 files changed, 99 insertions(+), 57 deletions(-) diff --git a/dgp/core/types/enumerations.py b/dgp/core/types/enumerations.py index 4aa7632..b3bd59a 100644 --- a/dgp/core/types/enumerations.py +++ b/dgp/core/types/enumerations.py @@ -4,6 +4,8 @@ import logging from enum import auto +from PyQt5.QtGui import QIcon + __all__ = ['StateAction', 'StateColor', 'Icon', 'ProjectTypes', 'MeterTypes', 'DataType'] @@ -37,6 +39,15 @@ class Icon(enum.Enum): SAVE = ":/icons/save" ARROW_LEFT = ":/icons/chevron-right" ARROW_DOWN = ":/icons/chevron-down" + DELETE = "" + GRID = "" + HELP = "" + LINE_MODE = "" + PLOT_LINE = "" + SETTINGS = "" + + def icon(self): + return QIcon(self.value) class LogColors(enum.Enum): diff --git a/dgp/gui/plotting/backends.py b/dgp/gui/plotting/backends.py index 34bebe3..ca3b04b 100644 --- a/dgp/gui/plotting/backends.py +++ b/dgp/gui/plotting/backends.py @@ -5,12 +5,13 @@ from weakref import WeakValueDictionary import pandas as pd -from PyQt5.QtWidgets import QMenu, QWidgetAction, QWidget, QAction +from PyQt5.QtWidgets import QMenu, QWidgetAction, QWidget, QAction, QToolBar, QMessageBox from pyqtgraph.widgets.GraphicsView import GraphicsView from pyqtgraph.graphicsItems.GraphicsLayout import GraphicsLayout from pyqtgraph.graphicsItems.PlotItem import PlotItem from pyqtgraph import SignalProxy, PlotDataItem +from dgp.core import Icon from dgp.gui.ui.plot_options_widget import Ui_PlotOptions from .helpers import PolyAxis @@ -32,7 +33,6 @@ class Axis(Enum): LINE_COLORS = {'#1f77b4', '#ff7f0e', '#2ca02c', '#d62728', '#9467bd', '#8c564b', '#e377c2', '#7f7f7f', '#bcbd22', '#17becf'} - # type aliases MaybePlot = Union['DgpPlotItem', None] MaybeSeries = Union[pd.Series, None] @@ -253,7 +253,7 @@ def updateAlpha(self, *args): if self.right is not None: alpha, auto_ = self.alphaState() for c in self.right.curves: - c.setAlpha(alpha**2, auto_) + c.setAlpha(alpha ** 2, auto_) def updateDownsampling(self): """Extends :meth:`pyqtgraph.PlotItem.updateDownsampling` @@ -639,6 +639,11 @@ def set_xlink(self, linked: bool = True, autorange: bool = False): if autorange: plot.autoRange() + def toggle_grids(self, state: bool): + for plot in self.plots: + plot.customControl.xGridCheck.setChecked(state) + plot.customControl.yGridCheck.setChecked(state) + def add_onclick_handler(self, slot, ratelimit: int = 60): # pragma: no cover """Creates a SignalProxy to forward Mouse Clicked events on the GraphicsLayout scene to the provided slot. @@ -656,6 +661,47 @@ def add_onclick_handler(self, slot, ratelimit: int = 60): # pragma: no cover self.__signal_proxies.append(sp) return sp + def get_toolbar(self, parent=None) -> QToolBar: + """Return a QToolBar with standard controls for the plot surface(s) + + Returns + ------- + QToolBar + + """ + toolbar = QToolBar(parent) + action_viewall = QAction(Icon.AUTOSIZE.icon(), "View All", self) + action_viewall.triggered.connect(self.autorange) + toolbar.addAction(action_viewall) + + action_grid = QAction(Icon.GRID.icon(), "Toggle Grid", self) + action_grid.setCheckable(True) + action_grid.setChecked(True) + action_grid.toggled.connect(self.toggle_grids) + toolbar.addAction(action_grid) + + action_clear = QAction(Icon.DELETE.icon(), "Clear Plots", self) + action_clear.triggered.connect(self.clear) + toolbar.addAction(action_clear) + + action_help = QAction(Icon.SETTINGS.HELP.icon(), "Plot Help", self) + action_help.triggered.connect(lambda: self.help_dialog(parent)) + toolbar.addAction(action_help) + + action_settings = QAction(Icon.SETTINGS.icon(), "Plot Settings", self) + toolbar.addAction(action_settings) + + toolbar.addSeparator() + + return toolbar + + @staticmethod + def help_dialog(parent=None): + QMessageBox.information(parent, "Plot Controls Help", + "Click and drag on the plot to pan\n" + "Right click and drag the plot to interactively zoom\n" + "Right click on the plot to view options specific to each plot area") + @staticmethod def make_index(name: str, row: int, col: int = 0, axis: Axis = Axis.LEFT) -> SeriesIndex: """Generate an index referring to a specific plot curve diff --git a/dgp/gui/plotting/plotters.py b/dgp/gui/plotting/plotters.py index d03d725..407c21f 100644 --- a/dgp/gui/plotting/plotters.py +++ b/dgp/gui/plotting/plotters.py @@ -4,9 +4,11 @@ import pandas as pd from PyQt5.QtCore import pyqtSignal, Qt +from PyQt5.QtWidgets import QAction from pyqtgraph import Point from pyqtgraph.GraphicsScene.mouseEvents import MouseClickEvent +from dgp.core import Icon from dgp.core import StateAction from dgp.core.oid import OID from .helpers import LinearSegmentGroup, LineUpdate @@ -187,6 +189,17 @@ def onclick(self, ev): # pragma: no cover stop = xpos + (vb_span * 0.05) self.add_segment(start, stop) + def get_toolbar(self, parent=None): + toolbar = super().get_toolbar(parent) + + action_mode = QAction(Icon.LINE_MODE.icon(), "Toggle Selection Mode", self) + action_mode.setCheckable(True) + action_mode.setChecked(self.selection_mode) + action_mode.toggled.connect(self.set_select_mode) + toolbar.addAction(action_mode) + + return toolbar + def _check_proximity(self, x, span, proximity=0.03) -> bool: """Check the proximity of a mouse click at location 'x' in relation to any already existing LinearRegions. diff --git a/dgp/gui/workspaces/PlotTab.py b/dgp/gui/workspaces/PlotTab.py index 9d28c61..34b4504 100644 --- a/dgp/gui/workspaces/PlotTab.py +++ b/dgp/gui/workspaces/PlotTab.py @@ -2,13 +2,11 @@ import logging import pandas as pd - from PyQt5.QtCore import Qt from PyQt5.QtGui import QStandardItem -from PyQt5.QtWidgets import QVBoxLayout, QHBoxLayout, QDockWidget, QSizePolicy -import PyQt5.QtWidgets as QtWidgets +from PyQt5.QtWidgets import QVBoxLayout, QHBoxLayout, QDockWidget, QSizePolicy, QAction -from dgp.core import StateAction +from dgp.core import StateAction, Icon from dgp.gui.widgets.channel_select_widget import ChannelSelectWidget from dgp.core.controllers.flight_controller import FlightController from dgp.gui.plotting.plotters import LineUpdate, LineSelectPlot @@ -43,51 +41,35 @@ def __init__(self, label: str, flight: FlightController, **kwargs): segment.uid, emit=False) segment.add_reference(group) - self._setup_ui() - - # TODO:There should also be a check to ensure that the lines are within the bounds of the data - # Huge slowdowns occur when trying to plot a FlightLine and a channel when the points are weeks apart - - def _setup_ui(self): - qhbl_main = QHBoxLayout() + # Create/configure the tab layout/widgets/controls + qhbl_main_layout = QHBoxLayout() qvbl_plot_layout = QVBoxLayout() - qhbl_top_buttons = QHBoxLayout() - self._qpb_channel_toggle = QtWidgets.QPushButton("Data Channels") - self._qpb_channel_toggle.setCheckable(True) - self._qpb_channel_toggle.setChecked(True) - qhbl_top_buttons.addWidget(self._qpb_channel_toggle, - alignment=Qt.AlignLeft) - - self._ql_mode = QtWidgets.QLabel('') - # top_button_hlayout.addSpacing(20) - qhbl_top_buttons.addStretch(2) - qhbl_top_buttons.addWidget(self._ql_mode) - qhbl_top_buttons.addStretch(2) - # top_button_hlayout.addSpacing(20) - self._qpb_toggle_mode = QtWidgets.QPushButton("Toggle Line Selection Mode") - self._qpb_toggle_mode.setCheckable(True) - self._qpb_toggle_mode.toggled.connect(self._toggle_selection) - qhbl_top_buttons.addWidget(self._qpb_toggle_mode, - alignment=Qt.AlignRight) - qvbl_plot_layout.addLayout(qhbl_top_buttons) + qhbl_main_layout.addItem(qvbl_plot_layout) + self.toolbar = self._plot.get_toolbar(self) + # self.toolbar.setToolButtonStyle(Qt.ToolButtonTextBesideIcon) + qvbl_plot_layout.addWidget(self.toolbar, alignment=Qt.AlignLeft) + qvbl_plot_layout.addWidget(self._plot) + + # Toggle control to hide/show data channels dock + qa_channel_toggle = QAction(Icon.PLOT_LINE.icon(), "Data Channels", self) + qa_channel_toggle.setCheckable(True) + qa_channel_toggle.setChecked(True) + self.toolbar.addAction(qa_channel_toggle) + # Load data channel selection widget channel_widget = ChannelSelectWidget(self._dataset.series_model) channel_widget.channel_added.connect(self._channel_added) channel_widget.channel_removed.connect(self._channel_removed) - channel_widget.channels_cleared.connect(self._clear_plot) + channel_widget.channels_cleared.connect(self._plot.clear) - # self.plot.widget.setSizePolicy(QSizePolicy(QSizePolicy.Expanding, - # QSizePolicy.Expanding)) - # qvbl_plot_layout.addWidget(self.plot.widget) - qvbl_plot_layout.addWidget(self._plot) dock_widget = QDockWidget("Channels") + dock_widget.setFeatures(QDockWidget.NoDockWidgetFeatures) dock_widget.setSizePolicy(QSizePolicy(QSizePolicy.Maximum, QSizePolicy.Preferred)) dock_widget.setWidget(channel_widget) - self._qpb_channel_toggle.toggled.connect(dock_widget.setVisible) - qhbl_main.addItem(qvbl_plot_layout) - qhbl_main.addWidget(dock_widget) - self.setLayout(qhbl_main) + qa_channel_toggle.toggled.connect(dock_widget.setVisible) + qhbl_main_layout.addWidget(dock_widget) + self.setLayout(qhbl_main_layout) def _channel_added(self, row: int, item: QStandardItem): series: pd.Series = item.data(Qt.UserRole) @@ -96,26 +78,13 @@ def _channel_added(self, row: int, item: QStandardItem): else: axis = Axis.LEFT self._plot.add_series(item.data(Qt.UserRole), row, axis=axis) - # plot = self._plot.get_plot(row=row) - # plot.autoRange(items=plot.curves) def _channel_removed(self, item: QStandardItem): - # TODO: Fix this for new API series: pd.Series = item.data(Qt.UserRole) indexes = self._plot.find_series(series.name) for index in indexes: self._plot.remove_series(*index) - def _clear_plot(self): - self._plot.clear() - - def _toggle_selection(self, state: bool): - self._plot.selection_mode = state - if state: - self._ql_mode.setText("

Line Selection Active

") - else: - self._ql_mode.setText("") - def _on_modified_line(self, update: LineUpdate): if update.action is StateAction.DELETE: self._dataset.remove_segment(update.uid) diff --git a/dgp/gui/workspaces/TransformTab.py b/dgp/gui/workspaces/TransformTab.py index a33956a..4be32e8 100644 --- a/dgp/gui/workspaces/TransformTab.py +++ b/dgp/gui/workspaces/TransformTab.py @@ -93,8 +93,11 @@ def __init__(self, flight: FlightController): self.qpb_toggle_mode.clicked.connect(self._mode_toggled) self.qte_source_browser.setReadOnly(True) self.qte_source_browser.setLineWrapMode(QTextEdit.NoWrap) - - self.hlayout.addWidget(self._plot, Qt.AlignLeft | Qt.AlignTop) + self.qvbl_plot_layout = QVBoxLayout() + self._toolbar = self._plot.get_toolbar(self) + self.qvbl_plot_layout.addWidget(self._toolbar, alignment=Qt.AlignRight) + self.qvbl_plot_layout.addWidget(self._plot) + self.hlayout.addLayout(self.qvbl_plot_layout) @property def xaxis_index(self) -> int: From 6acd1862b138eaf7990165f8d5704928bbea765f Mon Sep 17 00:00:00 2001 From: Zachery Brady Date: Tue, 14 Aug 2018 10:54:33 -0600 Subject: [PATCH 206/236] Add new Icon resources, cleanup old resources. Use new icons from material design library (Apache 2 License), uniform icon theme across application. Update Icons enumeration, add method to automatically create new QIcon instance. --- dgp/core/types/enumerations.py | 24 +++++++++------- dgp/gui/ui/main_window.ui | 8 +++--- dgp/gui/ui/resources/AutosizeStretch_16x.png | Bin 356 -> 0 bytes dgp/gui/ui/resources/AutosizeStretch_16x.svg | 1 - dgp/gui/ui/resources/GeoLocation_16x.svg | 1 - dgp/gui/ui/resources/apple_grav.svg | 5 ---- dgp/gui/ui/resources/autosize.png | Bin 0 -> 179 bytes dgp/gui/ui/resources/boat.png | Bin 0 -> 439 bytes dgp/gui/ui/resources/boat_icon.png | Bin 973 -> 0 bytes dgp/gui/ui/resources/chevron_down.png | Bin 0 -> 209 bytes dgp/gui/ui/resources/chevron_right.png | Bin 0 -> 163 bytes dgp/gui/ui/resources/delete.png | Bin 0 -> 253 bytes dgp/gui/ui/resources/dgp_icon.png | Bin 0 -> 46697 bytes dgp/gui/ui/resources/dgp_icon_large.png | Bin 0 -> 111535 bytes dgp/gui/ui/resources/dgp_simple.png | Bin 0 -> 35222 bytes dgp/gui/ui/resources/flight.png | Bin 0 -> 355 bytes dgp/gui/ui/resources/folder_closed.png | Bin 0 -> 194 bytes dgp/gui/ui/resources/folder_open.png | Bin 397 -> 200 bytes dgp/gui/ui/resources/gps.png | Bin 0 -> 574 bytes dgp/gui/ui/resources/gps_icon.png | Bin 819 -> 0 bytes dgp/gui/ui/resources/grid_off.png | Bin 0 -> 310 bytes dgp/gui/ui/resources/grid_on.png | Bin 0 -> 172 bytes dgp/gui/ui/resources/help_outline.png | Bin 0 -> 740 bytes dgp/gui/ui/resources/info.png | Bin 0 -> 366 bytes dgp/gui/ui/resources/line_mode.png | Bin 0 -> 154 bytes dgp/gui/ui/resources/location.png | Bin 0 -> 620 bytes dgp/gui/ui/resources/meter_config.png | Bin 615 -> 0 bytes dgp/gui/ui/resources/new_file.png | Bin 718 -> 225 bytes dgp/gui/ui/resources/plane_icon.png | Bin 478 -> 0 bytes dgp/gui/ui/resources/plot_line.png | Bin 0 -> 307 bytes dgp/gui/ui/resources/project_tree.png | Bin 0 -> 284 bytes dgp/gui/ui/resources/resources.qrc | 26 +++++++++++++----- dgp/gui/ui/resources/save_project.png | Bin 227 -> 252 bytes dgp/gui/ui/resources/sensor.png | Bin 0 -> 188 bytes dgp/gui/ui/resources/settings.png | Bin 0 -> 541 bytes dgp/gui/ui/resources/time_line.png | Bin 0 -> 272 bytes dgp/gui/ui/resources/tree-view/1x/Asset 1.png | Bin 283 -> 0 bytes .../ui/resources/tree-view/2x/Asset 1@2x.png | Bin 429 -> 0 bytes .../tree-view/2x/chevron-down@2x.png | Bin 429 -> 0 bytes .../tree-view/2x/chevron-right@2x.png | Bin 366 -> 0 bytes .../tree-view/3x/chevron-down@3x.png | Bin 590 -> 0 bytes .../tree-view/3x/chevron-right@3x.png | Bin 457 -> 0 bytes .../tree-view/ExpandChevronDown_16x.png | Bin 342 -> 0 bytes .../tree-view/ExpandChevronDown_16x.svg | 1 - .../tree-view/ExpandChevronRight_16x.png | Bin 294 -> 0 bytes .../tree-view/ExpandChevronRight_16x.svg | 1 - .../tree-view/ExpandChevronRight_lg_16x.png | Bin 247 -> 0 bytes .../tree-view/ExpandChevronRight_lg_16x.svg | 1 - .../ui/resources/tree-view/branch-closed.png | Bin 334 -> 0 bytes .../ui/resources/tree-view/branch-open.png | Bin 346 -> 0 bytes 50 files changed, 37 insertions(+), 31 deletions(-) delete mode 100644 dgp/gui/ui/resources/AutosizeStretch_16x.png delete mode 100644 dgp/gui/ui/resources/AutosizeStretch_16x.svg delete mode 100644 dgp/gui/ui/resources/GeoLocation_16x.svg delete mode 100644 dgp/gui/ui/resources/apple_grav.svg create mode 100644 dgp/gui/ui/resources/autosize.png create mode 100644 dgp/gui/ui/resources/boat.png delete mode 100644 dgp/gui/ui/resources/boat_icon.png create mode 100644 dgp/gui/ui/resources/chevron_down.png create mode 100644 dgp/gui/ui/resources/chevron_right.png create mode 100644 dgp/gui/ui/resources/delete.png create mode 100644 dgp/gui/ui/resources/dgp_icon.png create mode 100644 dgp/gui/ui/resources/dgp_icon_large.png create mode 100644 dgp/gui/ui/resources/dgp_simple.png create mode 100644 dgp/gui/ui/resources/flight.png create mode 100644 dgp/gui/ui/resources/folder_closed.png create mode 100644 dgp/gui/ui/resources/gps.png delete mode 100644 dgp/gui/ui/resources/gps_icon.png create mode 100644 dgp/gui/ui/resources/grid_off.png create mode 100644 dgp/gui/ui/resources/grid_on.png create mode 100644 dgp/gui/ui/resources/help_outline.png create mode 100644 dgp/gui/ui/resources/info.png create mode 100644 dgp/gui/ui/resources/line_mode.png create mode 100644 dgp/gui/ui/resources/location.png delete mode 100644 dgp/gui/ui/resources/meter_config.png delete mode 100644 dgp/gui/ui/resources/plane_icon.png create mode 100644 dgp/gui/ui/resources/plot_line.png create mode 100644 dgp/gui/ui/resources/project_tree.png create mode 100644 dgp/gui/ui/resources/sensor.png create mode 100644 dgp/gui/ui/resources/settings.png create mode 100644 dgp/gui/ui/resources/time_line.png delete mode 100644 dgp/gui/ui/resources/tree-view/1x/Asset 1.png delete mode 100644 dgp/gui/ui/resources/tree-view/2x/Asset 1@2x.png delete mode 100644 dgp/gui/ui/resources/tree-view/2x/chevron-down@2x.png delete mode 100644 dgp/gui/ui/resources/tree-view/2x/chevron-right@2x.png delete mode 100644 dgp/gui/ui/resources/tree-view/3x/chevron-down@3x.png delete mode 100644 dgp/gui/ui/resources/tree-view/3x/chevron-right@3x.png delete mode 100644 dgp/gui/ui/resources/tree-view/ExpandChevronDown_16x.png delete mode 100644 dgp/gui/ui/resources/tree-view/ExpandChevronDown_16x.svg delete mode 100644 dgp/gui/ui/resources/tree-view/ExpandChevronRight_16x.png delete mode 100644 dgp/gui/ui/resources/tree-view/ExpandChevronRight_16x.svg delete mode 100644 dgp/gui/ui/resources/tree-view/ExpandChevronRight_lg_16x.png delete mode 100644 dgp/gui/ui/resources/tree-view/ExpandChevronRight_lg_16x.svg delete mode 100644 dgp/gui/ui/resources/tree-view/branch-closed.png delete mode 100644 dgp/gui/ui/resources/tree-view/branch-open.png diff --git a/dgp/core/types/enumerations.py b/dgp/core/types/enumerations.py index b3bd59a..0d54fdb 100644 --- a/dgp/core/types/enumerations.py +++ b/dgp/core/types/enumerations.py @@ -1,8 +1,7 @@ # -*- coding: utf-8 -*- - import enum import logging -from enum import auto +from enum import Enum, auto from PyQt5.QtGui import QIcon @@ -31,26 +30,31 @@ class Icon(enum.Enum): OPEN_FOLDER = ":/icons/folder_open" AIRBORNE = ":/icons/airborne" MARINE = ":/icons/marine" - METER = ":/icons/meter_config" + METER = ":/icons/sensor" DGS = ":/icons/dgs" + DGP = ":/icons/dgp_large" + DGP_SMALL = ":/icons/dgp" + DGP_NOTEXT = ":/icons/dgp_notext" GRAVITY = ":/icons/gravity" TRAJECTORY = ":/icons/gps" NEW_FILE = ":/icons/new_file" SAVE = ":/icons/save" + DELETE = ":/icons/delete" ARROW_LEFT = ":/icons/chevron-right" ARROW_DOWN = ":/icons/chevron-down" - DELETE = "" - GRID = "" - HELP = "" - LINE_MODE = "" - PLOT_LINE = "" - SETTINGS = "" + LINE_MODE = ":/icons/line_mode" + PLOT_LINE = ":/icons/plot_line" + SETTINGS = ":/icons/settings" + INFO = ":/icons/info" + HELP = ":/icons/help_outline" + GRID = ":/icons/grid_on" + NO_GRID = ":/icons/grid_off" def icon(self): return QIcon(self.value) -class LogColors(enum.Enum): +class LogColors(Enum): DEBUG = 'blue' INFO = 'yellow' WARNING = 'brown' diff --git a/dgp/gui/ui/main_window.ui 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zhDe0hPVnSnG8Ay#>@BKtaj$~j9w(s-y&U)43SM7g=9uRYo+omIGq>;v=W^$*_Zc%6 zmVVR>`nuwO@FDG0Vl4{{cwFbST;H;F)~uZ>OOqLwXR>E>T7BS*>|y?Pfh#)A@8St* zz4X=zfe#qgE}R)^QZ}pFukfz%@_7xRpE@40&9ZhDzVVf@G+_3Nr>(}HzHoFMXPRZV zDdKGGjjeGF&x%zt8V+8N%B#^~h*{*g_t~j%k2SmZHM3ni5p>5q-|zG`?|^657iRtU bt7V@QK7VHCk;;`oZ!vhf`njxgN@xNAh82K! diff --git a/dgp/gui/ui/resources/tree-view/branch-open.png b/dgp/gui/ui/resources/tree-view/branch-open.png deleted file mode 100644 index e8cad95ccf686d088e8856578271c36be41d4b92..0000000000000000000000000000000000000000 GIT binary patch literal 0 HcmV?d00001 literal 346 zcmeAS@N?(olHy`uVBq!ia0vp^JV4CB!3HGHK9Tzfq*#ibJVQ8upoSx*1IXtr@Q5sC zU|>`RVa6iI@_Rr*$r9IylHmNblJdl&REF~Ma=pyF?Be9af>gcyqV(DCY@~pSu6w#T zhDb=V9yIid36x;F@cF(%VADFqY>&j$hjp7+rGGD&;N|&E(WOAD^@SLV>9=O#^bfZ0 zmEWJX+`4~zvEEOisY)HQCf|$+b)2B|Xc6Ddy4!z$O#aoQ;Ccv%)Be>&^~c{ Date: Tue, 14 Aug 2018 12:55:13 -0600 Subject: [PATCH 207/236] Refactor Icon usage/creation with Enum.icon() method Refactor Icon Enumeration to reduce duplicated path definitions; Icon.icon() method now constructs the Qt Resource path, using the Enum value as the name/alias. The prefix can be overridden in cases where the icon comes from a separate QRC prefix. --- dgp/core/__init__.py | 7 +- dgp/core/controllers/datafile_controller.py | 6 +- dgp/core/controllers/dataset_controller.py | 12 +-- dgp/core/controllers/flight_controller.py | 3 +- dgp/core/controllers/gravimeter_controller.py | 2 + dgp/core/controllers/project_containers.py | 11 +-- dgp/core/controllers/project_controllers.py | 6 +- dgp/core/types/enumerations.py | 71 +++++++-------- dgp/gui/dialogs/data_import_dialog.py | 4 +- dgp/gui/ui/channel_select_dialog.ui | 83 ------------------ dgp/gui/ui/resources/chevron_left.png | Bin 0 -> 176 bytes dgp/gui/ui/resources/chevron_up.png | Bin 0 -> 203 bytes dgp/gui/ui/resources/resources.qrc | 2 + 13 files changed, 65 insertions(+), 142 deletions(-) delete mode 100644 dgp/gui/ui/channel_select_dialog.ui create mode 100644 dgp/gui/ui/resources/chevron_left.png create mode 100644 dgp/gui/ui/resources/chevron_up.png diff --git a/dgp/core/__init__.py b/dgp/core/__init__.py index d5f704f..2a08eae 100644 --- a/dgp/core/__init__.py +++ b/dgp/core/__init__.py @@ -1,7 +1,6 @@ # -*- coding: utf-8 -*- - -__all__ = ['OID', 'Reference', 'StateAction'] - from .oid import OID from .types.reference import Reference -from .types.enumerations import * +from .types.enumerations import DataType, StateAction, Icon + +__all__ = ['OID', 'Reference', 'DataType', 'StateAction', 'Icon'] diff --git a/dgp/core/controllers/datafile_controller.py b/dgp/core/controllers/datafile_controller.py index 11d5c5b..5431c3d 100644 --- a/dgp/core/controllers/datafile_controller.py +++ b/dgp/core/controllers/datafile_controller.py @@ -23,7 +23,7 @@ def __init__(self, datafile: DataFile, dataset=None): self._bindings = [ ('addAction', ('Properties', self._properties_dlg)), - ('addAction', (QIcon(Icon.OPEN_FOLDER.value), 'Show in Explorer', + ('addAction', (Icon.OPEN_FOLDER.icon(), 'Show in Explorer', self._launch_explorer)) ] @@ -58,9 +58,9 @@ def set_datafile(self, datafile: DataFile): self.setToolTip("Source path: {!s}".format(datafile.source_path)) self.setData(datafile, role=Qt.UserRole) if self._datafile.group is DataType.GRAVITY: - self.setIcon(QIcon(Icon.GRAVITY.value)) + self.setIcon(Icon.GRAVITY.icon()) elif self._datafile.group is DataType.TRAJECTORY: - self.setIcon(QIcon(Icon.TRAJECTORY.value)) + self.setIcon(Icon.TRAJECTORY.icon()) def _properties_dlg(self): if self._datafile is None: diff --git a/dgp/core/controllers/dataset_controller.py b/dgp/core/controllers/dataset_controller.py index 7377802..02bb3e9 100644 --- a/dgp/core/controllers/dataset_controller.py +++ b/dgp/core/controllers/dataset_controller.py @@ -6,7 +6,7 @@ from pandas import DataFrame, Timestamp, concat from PyQt5.QtCore import Qt -from PyQt5.QtGui import QColor, QBrush, QIcon, QStandardItemModel, QStandardItem +from PyQt5.QtGui import QColor, QBrush, QStandardItemModel, QStandardItem from dgp.core.oid import OID from dgp.core.types.enumerations import Icon @@ -89,14 +89,14 @@ def __init__(self, dataset: DataSet, flight: IFlightController): self.setEditable(False) self.setText(self._dataset.name) - self.setIcon(QIcon(Icon.OPEN_FOLDER.value)) + self.setIcon(Icon.PLOT_LINE.icon()) self.setBackground(QBrush(QColor(StateColor.INACTIVE.value))) self._grav_file = DataFileController(self._dataset.gravity, self) self._traj_file = DataFileController(self._dataset.trajectory, self) self._child_map = {DataType.GRAVITY: self._grav_file, DataType.TRAJECTORY: self._traj_file} - self._segments = ProjectFolder("Segments") + self._segments = ProjectFolder("Segments", Icon.LINE_MODE.icon()) for segment in dataset.segments: seg_ctrl = DataSegmentController(segment, parent=self) self._segments.appendRow(seg_ctrl) @@ -114,12 +114,12 @@ def __init__(self, dataset: DataSet, flight: IFlightController): self._menu_bindings = [ # pragma: no cover ('addAction', ('Set Name', self._set_name)), ('addAction', ('Set Active', lambda: self.get_parent().activate_child(self.uid))), - ('addAction', (QIcon(Icon.METER.value), 'Set Sensor', + ('addAction', (Icon.METER.icon(), 'Set Sensor', self._set_sensor_dlg)), ('addSeparator', ()), - ('addAction', (QIcon(Icon.GRAVITY.value), 'Import Gravity', + ('addAction', (Icon.GRAVITY.icon(), 'Import Gravity', lambda: self._project.load_file_dlg(DataType.GRAVITY, dataset=self))), - ('addAction', (QIcon(Icon.TRAJECTORY.value), 'Import Trajectory', + ('addAction', (Icon.TRAJECTORY.icon(), 'Import Trajectory', lambda: self._project.load_file_dlg(DataType.TRAJECTORY, dataset=self))), ('addAction', ('Align Data', self.align)), ('addSeparator', ()), diff --git a/dgp/core/controllers/flight_controller.py b/dgp/core/controllers/flight_controller.py index 7d868fc..955e8ef 100644 --- a/dgp/core/controllers/flight_controller.py +++ b/dgp/core/controllers/flight_controller.py @@ -12,7 +12,7 @@ from dgp.core.controllers.controller_interfaces import IAirborneController, IFlightController from dgp.core.models.dataset import DataSet from dgp.core.models.flight import Flight -from dgp.core.types.enumerations import DataType, StateColor +from dgp.core.types.enumerations import DataType, StateColor, Icon from dgp.gui.dialogs.add_flight_dialog import AddFlightDialog @@ -54,6 +54,7 @@ def __init__(self, flight: Flight, project: IAirborneController): self._parent = project self._active: bool = False self.setData(flight, Qt.UserRole) + self.setIcon(Icon.AIRBORNE.icon()) self.setEditable(False) self.setBackground(QColor(StateColor.INACTIVE.value)) diff --git a/dgp/core/controllers/gravimeter_controller.py b/dgp/core/controllers/gravimeter_controller.py index 30a32d4..09c1abe 100644 --- a/dgp/core/controllers/gravimeter_controller.py +++ b/dgp/core/controllers/gravimeter_controller.py @@ -1,6 +1,7 @@ # -*- coding: utf-8 -*- from PyQt5.QtCore import Qt +from dgp.core import Icon from dgp.core.oid import OID from dgp.core.controllers.controller_interfaces import IAirborneController, IMeterController from dgp.core.controllers.controller_helpers import get_input @@ -13,6 +14,7 @@ def __init__(self, meter: Gravimeter, parent: IAirborneController = None): super().__init__(meter.name) self.setEditable(False) self.setData(meter, role=Qt.UserRole) + self.setIcon(Icon.METER.icon()) self._meter = meter # type: Gravimeter self._parent = parent diff --git a/dgp/core/controllers/project_containers.py b/dgp/core/controllers/project_containers.py index bb1310a..edaf2d0 100644 --- a/dgp/core/controllers/project_containers.py +++ b/dgp/core/controllers/project_containers.py @@ -3,6 +3,8 @@ from PyQt5.QtGui import QStandardItem, QStandardItemModel, QIcon +from dgp.core import Icon + class ProjectFolder(QStandardItem): """Displayable StandardItem used for grouping sub-elements. @@ -17,14 +19,13 @@ class ProjectFolder(QStandardItem): ----- Overriding object methods like __getitem__ __iter__ etc seems to break """ - inherit_context = False - def __init__(self, label: str, icon: str=None, inherit=False, **kwargs): + def __init__(self, label: str, icon: QIcon = None, **kwargs): super().__init__(label) - if icon is not None: - self.setIcon(QIcon(icon)) + if icon is None: + icon = Icon.OPEN_FOLDER.icon() + self.setIcon(icon) self._model = QStandardItemModel() - self.inherit_context = inherit self.setEditable(False) self._attributes = kwargs diff --git a/dgp/core/controllers/project_controllers.py b/dgp/core/controllers/project_controllers.py index ac6d8c2..763d398 100644 --- a/dgp/core/controllers/project_controllers.py +++ b/dgp/core/controllers/project_controllers.py @@ -54,14 +54,14 @@ def __init__(self, project: AirborneProject, path: Path = None): self._parent = None self._active = None - self.setIcon(QIcon(Icon.DGS.value)) + self.setIcon(Icon.DGP_NOTEXT.icon()) self.setToolTip(str(self._project.path.resolve())) self.setData(project, Qt.UserRole) self.setBackground(QColor(StateColor.INACTIVE.value)) - self.flights = ProjectFolder("Flights", Icon.AIRBORNE.value) + self.flights = ProjectFolder("Flights") self.appendRow(self.flights) - self.meters = ProjectFolder("Gravimeters", Icon.METER.value) + self.meters = ProjectFolder("Gravimeters") self.appendRow(self.meters) self._child_map = {Flight: self.flights, diff --git a/dgp/core/types/enumerations.py b/dgp/core/types/enumerations.py index 0d54fdb..98bb1d1 100644 --- a/dgp/core/types/enumerations.py +++ b/dgp/core/types/enumerations.py @@ -1,5 +1,4 @@ # -*- coding: utf-8 -*- -import enum import logging from enum import Enum, auto @@ -13,45 +12,47 @@ 'critical': logging.CRITICAL} -class StateAction(enum.Enum): +class StateAction(Enum): CREATE = auto() UPDATE = auto() DELETE = auto() -class StateColor(enum.Enum): +class StateColor(Enum): ACTIVE = '#11dd11' INACTIVE = '#ffffff' -class Icon(enum.Enum): +class Icon(Enum): """Resource Icon paths for Qt resources""" - AUTOSIZE = ":/icons/autosize" - OPEN_FOLDER = ":/icons/folder_open" - AIRBORNE = ":/icons/airborne" - MARINE = ":/icons/marine" - METER = ":/icons/sensor" - DGS = ":/icons/dgs" - DGP = ":/icons/dgp_large" - DGP_SMALL = ":/icons/dgp" - DGP_NOTEXT = ":/icons/dgp_notext" - GRAVITY = ":/icons/gravity" - TRAJECTORY = ":/icons/gps" - NEW_FILE = ":/icons/new_file" - SAVE = ":/icons/save" - DELETE = ":/icons/delete" - ARROW_LEFT = ":/icons/chevron-right" - ARROW_DOWN = ":/icons/chevron-down" - LINE_MODE = ":/icons/line_mode" - PLOT_LINE = ":/icons/plot_line" - SETTINGS = ":/icons/settings" - INFO = ":/icons/info" - HELP = ":/icons/help_outline" - GRID = ":/icons/grid_on" - NO_GRID = ":/icons/grid_off" - - def icon(self): - return QIcon(self.value) + AUTOSIZE = "autosize" + OPEN_FOLDER = "folder_open" + AIRBORNE = "airborne" + MARINE = "marine" + METER = "sensor" + DGS = "dgs" + DGP = "dgp_large" + DGP_SMALL = "dgp" + DGP_NOTEXT = "dgp_notext" + GRAVITY = "gravity" + TRAJECTORY = "gps" + NEW_FILE = "new_file" + SAVE = "save" + DELETE = "delete" + ARROW_LEFT = "chevron-left" + ARROW_RIGHT = "chevron-right" + ARROW_UP = "chevron-up" + ARROW_DOWN = "chevron-down" + LINE_MODE = "line_mode" + PLOT_LINE = "plot_line" + SETTINGS = "settings" + INFO = "info" + HELP = "help_outline" + GRID = "grid_on" + NO_GRID = "grid_off" + + def icon(self, prefix="icons"): + return QIcon(f':/{prefix}/{self.value}') class LogColors(Enum): @@ -62,12 +63,12 @@ class LogColors(Enum): CRITICAL = 'orange' -class ProjectTypes(enum.Enum): +class ProjectTypes(Enum): AIRBORNE = 'airborne' MARINE = 'marine' -class MeterTypes(enum.Enum): +class MeterTypes(Enum): """Gravity Meter Types""" AT1A = 'at1a' AT1M = 'at1m' @@ -75,13 +76,13 @@ class MeterTypes(enum.Enum): TAGS = 'tags' -class DataType(enum.Enum): +class DataType(Enum): """Gravity/Trajectory Data Types""" GRAVITY = 'gravity' TRAJECTORY = 'trajectory' -class GravityTypes(enum.Enum): +class GravityTypes(Enum): # TODO: add set of fields specific to each dtype AT1A = ('gravity', 'long_accel', 'cross_accel', 'beam', 'temp', 'status', 'pressure', 'Etemp', 'gps_week', 'gps_sow') @@ -93,7 +94,7 @@ class GravityTypes(enum.Enum): TAGS = ('tags', ) -class GPSFields(enum.Enum): +class GPSFields(Enum): sow = ('week', 'sow', 'lat', 'long', 'ell_ht') hms = ('mdy', 'hms', 'lat', 'long', 'ell_ht') serial = ('datenum', 'lat', 'long', 'ell_ht') diff --git a/dgp/gui/dialogs/data_import_dialog.py b/dgp/gui/dialogs/data_import_dialog.py index de7caaa..8680137 100644 --- a/dgp/gui/dialogs/data_import_dialog.py +++ b/dgp/gui/dialogs/data_import_dialog.py @@ -56,9 +56,9 @@ def __init__(self, project: IAirborneController, } } - self._gravity = QListWidgetItem(QIcon(Icon.GRAVITY.value), "Gravity") + self._gravity = QListWidgetItem(Icon.GRAVITY.icon(), "Gravity") self._gravity.setData(Qt.UserRole, DataType.GRAVITY) - self._trajectory = QListWidgetItem(QIcon(Icon.TRAJECTORY.value), "Trajectory") + self._trajectory = QListWidgetItem(Icon.TRAJECTORY.icon(), "Trajectory") self._trajectory.setData(Qt.UserRole, DataType.TRAJECTORY) self.qlw_datatype.addItem(self._gravity) diff --git a/dgp/gui/ui/channel_select_dialog.ui b/dgp/gui/ui/channel_select_dialog.ui deleted file mode 100644 index 1076b78..0000000 --- a/dgp/gui/ui/channel_select_dialog.ui +++ /dev/null @@ -1,83 +0,0 @@ - - - ChannelSelection - - - - 0 - 0 - 304 - 300 - - - - Select Data Channels - - - - - - true - - - QAbstractItemView::InternalMove - - - Qt::MoveAction - - - true - - - false - - - - - - - Qt::Horizontal - - - QDialogButtonBox::Close|QDialogButtonBox::Reset - - - - - - - - - dialog_buttons - accepted() - ChannelSelection - accept() - - - 248 - 254 - - - 157 - 274 - - - - - dialog_buttons - rejected() - ChannelSelection - reject() - - - 316 - 260 - - - 286 - 274 - - - - - diff --git a/dgp/gui/ui/resources/chevron_left.png b/dgp/gui/ui/resources/chevron_left.png new file mode 100644 index 0000000000000000000000000000000000000000..cbf41b457ff5904036b1f1e8e76d66e7daf482cf GIT binary patch literal 176 zcmeAS@N?(olHy`uVBq!ia0vp^1|ZDA1|-9oezpUta!(h>kP61P7Yw-?3vutN(mqG=@-9s`C90w=OtE*~M z{>eV#|N7(PG39?bAGyMwzBm8*SXn~ws(Xmrm!lmE>=yk=bTL|Pr8IlRo9&U}Ky!95 Yp1n}EciMl}6+jMyr>mdKI;Vst0A9~VrvLx| literal 0 HcmV?d00001 diff --git a/dgp/gui/ui/resources/chevron_up.png b/dgp/gui/ui/resources/chevron_up.png new file mode 100644 index 0000000000000000000000000000000000000000..540d3e15c3a199796f8d34cc71b56b4fd372efbf GIT binary patch literal 203 zcmeAS@N?(olHy`uVBq!ia0vp^1|ZDA0wn)(8}b0DNuDl_Ar*{o&o{EQIEb`9{A|{( zAi?qGb_yd$_lrhlA<+Qw!wUtBi&>xVW_e}b)Y0M5bnskY`{8xPXNwQ1zBf9!=RV74 zYcs!!C;Q8+)lWSO@0PA!H%DV;e!~h)(}RBw)y#>om^gpFV1a0!u;foE7sldqF7ozs zXY5~Tcy#-}mH!PEHC4{|p%~cBKQAQXqnV)KMBxi+WpbP9qP_xM$KdJe=d#Wzp$Pyd Cp-&J1 literal 0 HcmV?d00001 diff --git a/dgp/gui/ui/resources/resources.qrc b/dgp/gui/ui/resources/resources.qrc index 887a08e..887e589 100644 --- a/dgp/gui/ui/resources/resources.qrc +++ b/dgp/gui/ui/resources/resources.qrc @@ -1,5 +1,7 @@ + chevron_left.png + chevron_up.png dgp_simple.png dgp_icon.png dgp_icon_large.png From bc115c24b41432da4b92229bb5e8130816ad54d7 Mon Sep 17 00:00:00 2001 From: Zachery Brady Date: Thu, 16 Aug 2018 09:41:13 -0600 Subject: [PATCH 208/236] Rewrite channel control widget Rename channel_select_widget -> channel_control_widgets Complete re-write of what was ChannelSelectWidget to ChannelController. The ChannelController widget now takes ownership of a supplied plotter, and handles all user interaction (adding/removing/updating plot lines). --- dgp/core/controllers/flight_controller.py | 2 +- dgp/gui/plotting/backends.py | 27 +- dgp/gui/ui/resources/console.png | Bin 0 -> 161 bytes dgp/gui/ui/resources/resources.qrc | 2 + dgp/gui/ui/resources/select.png | Bin 0 -> 310 bytes dgp/gui/widgets/channel_control_widgets.py | 403 +++++++++++++++++++++ dgp/gui/widgets/channel_select_widget.py | 123 ------- dgp/gui/workspace.py | 2 - dgp/gui/workspaces/PlotTab.py | 37 +- 9 files changed, 438 insertions(+), 158 deletions(-) create mode 100644 dgp/gui/ui/resources/console.png create mode 100644 dgp/gui/ui/resources/select.png create mode 100644 dgp/gui/widgets/channel_control_widgets.py delete mode 100644 dgp/gui/widgets/channel_select_widget.py diff --git a/dgp/core/controllers/flight_controller.py b/dgp/core/controllers/flight_controller.py index 955e8ef..23c51c4 100644 --- a/dgp/core/controllers/flight_controller.py +++ b/dgp/core/controllers/flight_controller.py @@ -1,6 +1,6 @@ # -*- coding: utf-8 -*- import logging -from _weakrefset import WeakSet +from weakref import WeakSet from typing import Union from PyQt5.QtCore import Qt diff --git a/dgp/gui/plotting/backends.py b/dgp/gui/plotting/backends.py index ca3b04b..3375b77 100644 --- a/dgp/gui/plotting/backends.py +++ b/dgp/gui/plotting/backends.py @@ -5,6 +5,7 @@ from weakref import WeakValueDictionary import pandas as pd +from PyQt5.QtCore import pyqtSignal from PyQt5.QtWidgets import QMenu, QWidgetAction, QWidget, QAction, QToolBar, QMessageBox from pyqtgraph.widgets.GraphicsView import GraphicsView from pyqtgraph.graphicsItems.GraphicsLayout import GraphicsLayout @@ -347,6 +348,8 @@ class aims to simplify the API for our use cases, and add functionality for :func:`pyqtgraph.mkColor` for color options in the plot (creates a QtGui.QColor) """ + sigPlotCleared = pyqtSignal() + def __init__(self, rows=1, cols=1, background='w', grid=True, sharex=False, multiy=False, timeaxis=False, parent=None): super().__init__(background=background, parent=parent) @@ -433,7 +436,8 @@ def get_plot(self, row: int, col: int = 0, axis: Axis = Axis.LEFT) -> MaybePlot: return plot def add_series(self, series: pd.Series, row: int, col: int = 0, - axis: Axis = Axis.LEFT, autorange: bool = True) -> PlotItem: + axis: Axis = Axis.LEFT, pen=None, + autorange: bool = True) -> PlotDataItem: """Add a pandas :class:`pandas.Series` to the plot at the specified row/column @@ -451,8 +455,8 @@ def add_series(self, series: pd.Series, row: int, col: int = 0, Returns ------- - :class:`pyqtgraph.PlotItem` - The generated PlotItem or derivative created from the data + :class:`pyqtgraph.PlotDataItem` + The generated PlotDataItem or derivative created from the data Raises ------ @@ -469,7 +473,7 @@ def add_series(self, series: pd.Series, row: int, col: int = 0, plot = self.get_plot(row, col, axis) xvals = pd.to_numeric(series.index, errors='coerce') yvals = pd.to_numeric(series.values, errors='coerce') - item = plot.plot(x=xvals, y=yvals, name=series.name, pen=self.pen) + item = plot.plot(x=xvals, y=yvals, name=series.name, pen=pen or self.pen) self._items[index] = item if autorange: plot.autoRange() @@ -536,8 +540,9 @@ def clear(self) -> None: for curve in plot_r.curves[:]: plot_r.legend.removeItem(curve.name()) plot_r.removeItem(curve) + self.sigPlotCleared.emit() - def remove_plotitem(self, item: PlotDataItem) -> None: + def remove_plotitem(self, item: PlotDataItem, autorange=True) -> None: """Alternative method of removing a line by its :class:`pyqtgraph.PlotDataItem` reference, as opposed to using remove_series to remove a named series from a specific plot at row/col @@ -550,11 +555,13 @@ def remove_plotitem(self, item: PlotDataItem) -> None: resides """ - for plot, index in self.gl.items.items(): - if isinstance(plot, PlotItem): # pragma: no branch - if item in plot.dataItems: - plot.legend.removeItem(item.name()) - plot.removeItem(item) + for plot in self.plots: + plot.legend.removeItem(item.name()) + plot.removeItem(item) + if plot.right is not None: + plot.right.removeItem(item) + if autorange: + self.autorange() def find_series(self, name: str) -> List[SeriesIndex]: """Find and return a list of all plot indexes where a series with diff --git a/dgp/gui/ui/resources/console.png b/dgp/gui/ui/resources/console.png new file mode 100644 index 0000000000000000000000000000000000000000..455ef8d68b741e54a4ec384988f6052eb63b4dc0 GIT binary patch literal 161 zcmeAS@N?(olHy`uVBq!ia0vp^Dj>|k1|%Oc%$NbBGCW-zLn;{GUSecB;K1W@alg1e z_pZH}Vq45T@&%@ut(@iF@E}=WVhZnz2F8D%Bri0&B{0mZVQ*Zm@IvK*>v9EF%@@BN zxuX6?E?;otzT4Ube`;++mndl8=oh@f-NbgpEJ3ZsXTfA2m%Jh`_t4Hxt3yCL89ZJ6 KT-G@yGywqQB{=c` literal 0 HcmV?d00001 diff --git a/dgp/gui/ui/resources/resources.qrc b/dgp/gui/ui/resources/resources.qrc index 887e589..6cec635 100644 --- a/dgp/gui/ui/resources/resources.qrc +++ b/dgp/gui/ui/resources/resources.qrc @@ -1,5 +1,7 @@ + select.png + console.png chevron_left.png chevron_up.png dgp_simple.png diff --git a/dgp/gui/ui/resources/select.png b/dgp/gui/ui/resources/select.png new file mode 100644 index 0000000000000000000000000000000000000000..aa2b3454a3df2442d007daab833c3cd503c5345b GIT binary patch literal 310 zcmV-60m=S}P)TBhwM5a$Iy|*R07I zR7r^!F2MnLz3QO13L+edFCxJa@vKwrTZ#%D+Z&}8ve;SUV*4tu{28jLDSwL%nUJ*D zkjljHN3tj87S=}W8=Kc^b8WRV?3;hMDm6PGyFap3b)?Vy0K5a{PJj*N(EtDd07*qo IM6N<$f;xkNWB>pF literal 0 HcmV?d00001 diff --git a/dgp/gui/widgets/channel_control_widgets.py b/dgp/gui/widgets/channel_control_widgets.py new file mode 100644 index 0000000..646b611 --- /dev/null +++ b/dgp/gui/widgets/channel_control_widgets.py @@ -0,0 +1,403 @@ +# -*- coding: utf-8 -*- +import itertools +from functools import partial +from typing import List, Dict, Tuple +from weakref import WeakValueDictionary + +from PyQt5.QtCore import Qt, pyqtSignal, QModelIndex, QAbstractItemModel, QSize, QPoint +from PyQt5.QtGui import QStandardItem, QStandardItemModel, QMouseEvent, QColor, QPalette, QBrush +from PyQt5.QtWidgets import (QWidget, QVBoxLayout, QListView, QMenu, QAction, + QSizePolicy, QStyledItemDelegate, QStyleOptionViewItem, QHBoxLayout, QLabel, + QColorDialog, QToolButton, QFrame, QComboBox) +from pandas import Series +from pyqtgraph import PlotDataItem + +from dgp.core import Icon, OID +from dgp.gui.plotting.backends import GridPlotWidget, Axis, LINE_COLORS + +__all__ = ['ChannelController', 'ChannelItem'] + + +class ColorPicker(QLabel): + """ColorPicker creates a colored label displaying its current color value + + Clicking on the picker launches a QColorDialog, allowing the user to choose + a color. + + Parameters + ---------- + color : QColor, optional + Specify the initial color value of the color picker + parent : QWidget, optional + + """ + sigColorChanged = pyqtSignal(object) + + def __init__(self, color: QColor = QColor(), parent=None): + super().__init__(parent) + self.setAutoFillBackground(True) + self.setSizePolicy(QSizePolicy(QSizePolicy.Maximum, QSizePolicy.Preferred)) + self.setToolTip("Customize channel line color") + self._color = color + self._update() + + @property + def color(self) -> QColor: + return self._color + + def mouseReleaseEvent(self, event: QMouseEvent): + color: QColor = QColorDialog.getColor(self._color, parent=self) + if color.isValid(): + self._color = color + self.sigColorChanged.emit(self._color) + self._update() + + def sizeHint(self): + return QSize(30, 30) + + def _update(self): + """Updates the background color for display""" + palette: QPalette = self.palette() + palette.setColor(self.backgroundRole(), self._color) + self.setPalette(palette) + + +class DataChannelEditor(QFrame): + """This object defines the widget displayed when a data channel is selected + within the ChannelController listr view. + + This widget provides controls enabling a user to select which plot and axis + a channel is plotted on, and to set the visibility and color of the channel. + + """ + SIZE = QSize(140, 35) + + def __init__(self, item: 'ChannelItem', rows=1, parent=None): + super().__init__(parent, flags=Qt.Widget) + self.setFrameStyle(QFrame.Box) + self.setLineWidth(1) + self.setAutoFillBackground(True) + + self._item = item + + layout = QHBoxLayout(self) + layout.setContentsMargins(2, 2, 2, 2) + layout.setSpacing(1) + sp_btn = QSizePolicy(QSizePolicy.Minimum, QSizePolicy.MinimumExpanding) + sp_combo = QSizePolicy(QSizePolicy.Preferred, QSizePolicy.MinimumExpanding) + + self._label = QLabel(item.name) + self._picker = ColorPicker(color=item.line_color, parent=self) + self._picker.sigColorChanged.connect(item.set_color) + + # Plot Row Selection ComboBox + + self._row_cb = QComboBox() + self._row_cb.setToolTip("Plot channel on selected row") + self._row_cb.setSizePolicy(sp_combo) + for i in range(rows): + self._row_cb.addItem(str(i), i) + self._row_cb.setCurrentIndex(item.target_row) + self._row_cb.currentIndexChanged.connect(self.change_row) + + # Left/Right Axis Controls + self._left = QToolButton() + self._left.setCheckable(False) + self._left.setToolTip("Plot channel on left y-axis") + self._left.setIcon(Icon.ARROW_LEFT.icon()) + self._left.setSizePolicy(sp_btn) + self._left.clicked.connect(partial(self.change_axis, Axis.LEFT)) + self._right = QToolButton() + self._right.setCheckable(False) + self._right.setToolTip("Plot channel on right y-axis") + self._right.setIcon(Icon.ARROW_RIGHT.icon()) + self._right.setSizePolicy(sp_btn) + self._right.clicked.connect(partial(self.change_axis, Axis.RIGHT)) + + # Channel Settings ToolButton + self._settings = QToolButton() + self._settings.setSizePolicy(sp_btn) + self._settings.setIcon(Icon.SETTINGS.icon()) + + layout.addWidget(self._label) + layout.addSpacing(5) + layout.addWidget(self._picker) + layout.addSpacing(2) + layout.addWidget(self._row_cb) + layout.addSpacing(5) + layout.addWidget(self._left) + layout.addWidget(self._right) + layout.addWidget(self._settings) + + def toggle_axis(self, axis: Axis, checked: bool): + pass + + def change_axis(self, axis): + + self._item.set_axis(axis, emit=False) + if self._item.checkState() == Qt.Checked: + self._item.update() + else: + self._item.setCheckState(Qt.Checked) + + def change_row(self, index): + row: int = self._row_cb.currentData(Qt.UserRole) + self._item.set_row(row) + + def mouseDoubleClickEvent(self, event: QMouseEvent): + self._item.setCheckState(Qt.Unchecked if self._item.visible else Qt.Checked) + + +class ChannelDelegate(QStyledItemDelegate): + def __init__(self, rows=1, parent=None): + super().__init__(parent=parent) + self._rows = rows + + def createEditor(self, parent: QWidget, option: QStyleOptionViewItem, + index: QModelIndex): + item = index.model().itemFromIndex(index) + editor = DataChannelEditor(item, self._rows, parent) + + return editor + + def setModelData(self, editor: QWidget, model: QAbstractItemModel, + index: QModelIndex): + """Do nothing, editor does not directly mutate model data""" + pass + + def sizeHint(self, option: QStyleOptionViewItem, index: QModelIndex): + return DataChannelEditor.SIZE + + +class ChannelItem(QStandardItem): + """The ChannelItem defines the UI representation of a plotable data channel + + ChannelItems maintain the desired state of the channel in relation to its + visibility, line color, plot axis, and plot row/column. It is the + responsibility of the owning controller to act on state changes of the + channel item. + + The itemChanged signal is emitted (via the QStandardItemModel owner) by the + ChannelItem whenever its internal state has been updated. + + Parameters + ---------- + name: str + Display name for the channel + color : QColor, optional + Optional base color for this channel item + + Notes + ----- + Setter methods are used instead of property setters in order to facilitate + signal connections, or setting of properties from within a lambda expression + + """ + _base_color = QColor(Qt.white) + + def __init__(self, name: str, color=QColor()): + super().__init__() + self.setCheckable(True) + self.name = name + self._row = 0 + self._col = 0 + self._axis = Axis.LEFT + self._color = color + self.uid = OID(tag=name) + + self.update(emit=False) + + @property + def target_row(self): + return self._row + + def set_row(self, row, emit=True): + self._row = row + if emit: + self.update() + + @property + def target_axis(self): + return self._axis + + def set_axis(self, axis: Axis, emit=True): + self._axis = axis + if emit: + self.update() + + @property + def line_color(self) -> QColor: + return self._color + + def set_color(self, color: QColor, emit=True): + self._color = color + if emit: + self.update() + + @property + def visible(self) -> bool: + return self.checkState() == Qt.Checked + + def set_visible(self, visible: bool, emit=True): + self.setCheckState(Qt.Checked if visible else Qt.Unchecked) + if emit: + self.update() + + def update(self, emit=True): + if self.visible: + self.setText(f'{self.name} - {self.target_row} | {self.target_axis.value}') + self.setBackground(self.line_color) + else: + self.setText(f'{self.name}') + self.setBackground(self._base_color) + if emit: + self.emitDataChanged() + + def key(self) -> Tuple[int, int, Axis]: + return self._row, self._col, self._axis + + def __hash__(self): + return hash(self.uid) + + +class ChannelController(QWidget): + """The ChannelController widget is associated with a Plotter, e.g. a + :class:`GridPlotWidget`, and provides an interface for a user to select and + plot any of the various :class:`pandas.Series` objects supplied to it. + + Parameters + ---------- + plotter : :class:`~dgp.gui.plotting.backends.GridPlotWidget` + *series : :class:`pandas.Series` + binary_series : List of :class:`pandas.Series`, optional + Optional list of series to be interpreted/grouped as binary data, e.g. + for status bits + parent : QWidget, optional + + """ + def __init__(self, plotter: GridPlotWidget, *series: Series, + binary_series: List[Series] = None, parent: QWidget = None): + super().__init__(parent, flags=Qt.Widget) + self.plotter = plotter + self.plotter.sigPlotCleared.connect(self._channels_cleared) + self.setSizePolicy(QSizePolicy(QSizePolicy.Maximum, QSizePolicy.Preferred)) + self._layout = QVBoxLayout(self) + binary_series = binary_series or [] + + self._model = QStandardItemModel() + self._model.itemChanged.connect(self.channel_changed) + self._binary_model = QStandardItemModel() + self._binary_model.itemChanged.connect(self.binary_changed) + + self._series: Dict[OID, Series] = {} + self._active: Dict[OID, PlotDataItem] = WeakValueDictionary() + self._indexes: Dict[OID, object] = {} + + self._colors = itertools.cycle(LINE_COLORS) + + for s in series: + item = ChannelItem(s.name, QColor(next(self._colors))) + self._series[item.uid] = s + self._model.appendRow(item) + + for b in binary_series: + item = QStandardItem(b.name) + item.uid = OID() + item.setCheckable(True) + self._series[item.uid] = b + self._binary_model.appendRow(item) + + # Define/configure List Views + series_delegate = ChannelDelegate(rows=self.plotter.rows, parent=self) + self.series_view = QListView(parent=self) + self.series_view.setMinimumWidth(250) + self.series_view.setUniformItemSizes(True) + self.series_view.setEditTriggers(QListView.SelectedClicked | + QListView.DoubleClicked | + QListView.CurrentChanged) + self.series_view.setItemDelegate(series_delegate) + self.series_view.setContextMenuPolicy(Qt.CustomContextMenu) + self.series_view.customContextMenuRequested.connect(self._context_menu) + self.series_view.setModel(self._model) + + self._layout.addWidget(self.series_view, stretch=2) + + self.binary_view = QListView(parent=self) + self.binary_view.setEditTriggers(QListView.NoEditTriggers) + self.binary_view.setUniformItemSizes(True) + self.binary_view.setModel(self._binary_model) + + self._status_label = QLabel("Status Channels") + self._layout.addWidget(self._status_label, alignment=Qt.AlignHCenter) + + self._layout.addWidget(self.binary_view, stretch=1) + + def channel_changed(self, item: ChannelItem): + item.update(emit=False) + if item.uid in self._active: # Channel is already somewhere on the plot + if not item.visible: + self._remove_series(item) + else: + self._update_series(item) + + elif item.visible: # Channel is not yet plotted + self._add_series(item) + series = self._series[item.uid] + line = self.plotter.add_series(series, item.target_row, + axis=item.target_axis) + self._active[item.uid] = line + else: # Item is not active, and its state is not visible (do nothing) + pass + + def _add_series(self, item: ChannelItem): + """Add a new series to the controls plotter""" + series = self._series[item.uid] + row = item.target_row + axis = item.target_axis + + line = self.plotter.add_series(series, row, col=0, axis=axis, + pen=item.line_color) + self._active[item.uid] = line + self._indexes[item.uid] = item.key() + + def _update_series(self, item: ChannelItem): + """Update paramters (color, axis, row) of an already plotted series""" + line = self._active[item.uid] + line.setPen(item.line_color) + + # Need to know the current axis and row of an _active line + if item.key() != self._indexes[item.uid]: + self._remove_series(item) + self._add_series(item) + + def _remove_series(self, item: ChannelItem): + line = self._active[item.uid] + self.plotter.remove_plotitem(line) + + def _channels_cleared(self): + """Respond to plot notification that all lines have been cleared""" + for i in range(self._model.rowCount()): + item: ChannelItem = self._model.item(i) + item.set_visible(False, emit=False) + item.update(emit=False) + + def binary_changed(self, item: QStandardItem): + if item.checkState() == Qt.Checked: + if item.uid in self._active: + print(f'Binary channel already plotted') + return + else: + series = self._series[item.uid] + line = self.plotter.add_series(series, 1, 0, axis=Axis.RIGHT) + self._active[item.uid] = line + else: + print(f"Un-plotting binary area for {item.text()}") + line = self._active[item.uid] + self.plotter.remove_plotitem(line) + + def _context_menu(self, point: QPoint): + index: QModelIndex = self.series_view.indexAt(point) + if not index.isValid(): + print("Providing general context menu (clear items)") + else: + print(f'Providing menu for item {self._model.itemFromIndex(index).text()}') diff --git a/dgp/gui/widgets/channel_select_widget.py b/dgp/gui/widgets/channel_select_widget.py deleted file mode 100644 index 08cc3a9..0000000 --- a/dgp/gui/widgets/channel_select_widget.py +++ /dev/null @@ -1,123 +0,0 @@ -# -*- coding: utf-8 -*- -import functools -from typing import Union - -from PyQt5.QtCore import QObject, Qt, pyqtSignal, QModelIndex, QIdentityProxyModel -from PyQt5.QtGui import QStandardItem, QStandardItemModel, QContextMenuEvent -from PyQt5.QtWidgets import (QWidget, QVBoxLayout, QListView, QMenu, QAction, - QSizePolicy, QPushButton) - - -class ChannelProxyModel(QIdentityProxyModel): - def __init__(self, parent=None): - super().__init__(parent=parent) - - def setSourceModel(self, model: QStandardItemModel): - super().setSourceModel(model) - - def insertColumns(self, p_int, p_int_1, parent=None, *args, **kwargs): - pass - - -class ChannelListView(QListView): - channel_plotted = pyqtSignal(int, QStandardItem) - channel_unplotted = pyqtSignal(QStandardItem) - - def __init__(self, nplots=1, parent=None): - super().__init__(parent) - self.setSizePolicy(QSizePolicy(QSizePolicy.Maximum, QSizePolicy.MinimumExpanding)) - self.setEditTriggers(QListView.NoEditTriggers) - self._n = nplots - self._actions = [] - - def setModel(self, model: QStandardItemModel): - super().setModel(model) - - def contextMenuEvent(self, event: QContextMenuEvent, *args, **kwargs): - index: QModelIndex = self.indexAt(event.pos()) - self._actions.clear() - item = self.model().itemFromIndex(index) - menu = QMenu(self) - for i in range(self._n): - action: QAction = QAction("Plot on %d" % i) - action.triggered.connect(functools.partial(self._plot_item, i, item)) - # action.setCheckable(True) - # action.setChecked(item.checkState()) - # action.toggled.connect(functools.partial(self._channel_toggled, item, i)) - self._actions.append(action) - menu.addAction(action) - - action_del: QAction = QAction("Clear from plot") - action_del.triggered.connect(functools.partial(self._unplot_item, item)) - menu.addAction(action_del) - - menu.exec_(event.globalPos()) - event.accept() - - def _channel_toggled(self, item: QStandardItem, plot: int, checked: bool): - print("item: %s in checkstate %s on plot: %d" % (item.data(Qt.DisplayRole), str(checked), plot)) - item.setCheckState(checked) - - def _plot_item(self, plot: int, item: QStandardItem): - print("Plotting %s on plot# %d" % (item.data(Qt.DisplayRole), plot)) - self.channel_plotted.emit(plot, item) - - def _unplot_item(self, item: QStandardItem): - self.channel_unplotted.emit(item) - - -class ChannelSelectWidget(QWidget): - """ - Working Notes: - Lets assume a channel can only be plotted once in total no matter how many plots - - Options - we can use check boxes, right-click context menu, or a table with 3 checkboxes (but 3 copies of the - channel?) - - Either the channel (QStandardItem) or the view needs to track its plotted state somehow - Perhaps we can use a QIdentityProxyModel to which we can add columns to without modifying - the source model. - - """ - channel_added = pyqtSignal(int, QStandardItem) - channel_removed = pyqtSignal(QStandardItem) - channels_cleared = pyqtSignal() - - def __init__(self, model: QStandardItemModel, plots: int = 1, parent: Union[QWidget, QObject] = None): - super().__init__(parent=parent, flags=Qt.Widget) - self._model = model - self._model.modelReset.connect(self.channels_cleared.emit) - self._model.rowsInserted.connect(self._rows_inserted) - self._model.itemChanged.connect(self._item_changed) - - self._view = ChannelListView(nplots=2, parent=self) - self._view.channel_plotted.connect(self.channel_added.emit) - self._view.channel_unplotted.connect(self.channel_removed.emit) - self._view.setModel(self._model) - - self._qpb_clear = QPushButton("Clear Channels") - self._qpb_clear.clicked.connect(self.channels_cleared.emit) - self._layout = QVBoxLayout(self) - self._layout.addWidget(self._view) - self._layout.addWidget(self._qpb_clear) - - - def _rows_inserted(self, parent: QModelIndex, first: int, last: int): - pass - # print("Rows have been inserted: %d to %d" % (first, last)) - - def _rows_removed(self, parent: QModelIndex, first: int, last: int): - pass - # print("Row has been removed: %d" % first) - - def _model_reset(self): - print("Model has been reset") - - def _item_changed(self, item: QStandardItem): - # Work only on single plot for now - if item.checkState(): - print("Plotting channel: %s" % item.data(Qt.DisplayRole)) - self.channel_added.emit(0, item) - else: - print("Removing channel: %s" % item.data(Qt.DisplayRole)) - self.channel_removed.emit(item) diff --git a/dgp/gui/workspace.py b/dgp/gui/workspace.py index c28bfbb..de1f718 100644 --- a/dgp/gui/workspace.py +++ b/dgp/gui/workspace.py @@ -22,9 +22,7 @@ def __init__(self, flight: FlightController, parent=None, flags=0, **kwargs): self.log = logging.getLogger(__name__) self._root: IBaseController = flight self._layout = QVBoxLayout(self) - self._setup_tasktabs() - def _setup_tasktabs(self): # Define Sub-Tabs within Flight space e.g. Plot, Transform, Maps self._tasktabs = QTabWidget() self._tasktabs.setTabPosition(QTabWidget.West) diff --git a/dgp/gui/workspaces/PlotTab.py b/dgp/gui/workspaces/PlotTab.py index 34b4504..585a877 100644 --- a/dgp/gui/workspaces/PlotTab.py +++ b/dgp/gui/workspaces/PlotTab.py @@ -7,8 +7,9 @@ from PyQt5.QtWidgets import QVBoxLayout, QHBoxLayout, QDockWidget, QSizePolicy, QAction from dgp.core import StateAction, Icon -from dgp.gui.widgets.channel_select_widget import ChannelSelectWidget +from dgp.core.controllers.dataset_controller import DataSetController from dgp.core.controllers.flight_controller import FlightController +from dgp.gui.widgets.channel_control_widgets import ChannelController from dgp.gui.plotting.plotters import LineUpdate, LineSelectPlot from dgp.gui.plotting.backends import Axis from .TaskTab import TaskTab @@ -32,7 +33,7 @@ def __init__(self, label: str, flight: FlightController, **kwargs): self._dataset = flight.active_child self._plot = LineSelectPlot(rows=2) - self._plot.sigSegmentChanged.connect(self._on_modified_line) + self._plot.sigSegmentChanged.connect(self._on_modified_segment) for segment in self._dataset.segments: group = self._plot.add_segment(segment.get_attr('start'), @@ -57,35 +58,27 @@ def __init__(self, label: str, flight: FlightController, **kwargs): self.toolbar.addAction(qa_channel_toggle) # Load data channel selection widget - channel_widget = ChannelSelectWidget(self._dataset.series_model) - channel_widget.channel_added.connect(self._channel_added) - channel_widget.channel_removed.connect(self._channel_removed) - channel_widget.channels_cleared.connect(self._plot.clear) + df = self._dataset.dataframe() + data_cols = ('gravity', 'long_accel', 'cross_accel', 'beam', 'temp', + 'pressure', 'Etemp', 'gps_week', 'gps_sow', 'lat', 'long', + 'ell_ht') + cols = [df[col] for col in df if col in data_cols] + stat_cols = [df[col] for col in df if col not in data_cols] + controller = ChannelController(self._plot, *cols, + binary_series=stat_cols, parent=self) dock_widget = QDockWidget("Channels") dock_widget.setFeatures(QDockWidget.NoDockWidgetFeatures) dock_widget.setSizePolicy(QSizePolicy(QSizePolicy.Maximum, QSizePolicy.Preferred)) - dock_widget.setWidget(channel_widget) - qa_channel_toggle.toggled.connect(dock_widget.setVisible) - qhbl_main_layout.addWidget(dock_widget) + dock_widget.setWidget(controller) + qa_channel_toggle.toggled.connect(controller.setVisible) + qhbl_main_layout.addWidget(controller) self.setLayout(qhbl_main_layout) - def _channel_added(self, row: int, item: QStandardItem): - series: pd.Series = item.data(Qt.UserRole) - if series.max(skipna=True) < 1000: - axis = Axis.RIGHT - else: - axis = Axis.LEFT - self._plot.add_series(item.data(Qt.UserRole), row, axis=axis) - def _channel_removed(self, item: QStandardItem): - series: pd.Series = item.data(Qt.UserRole) - indexes = self._plot.find_series(series.name) - for index in indexes: - self._plot.remove_series(*index) - def _on_modified_line(self, update: LineUpdate): + def _on_modified_segment(self, update: LineUpdate): if update.action is StateAction.DELETE: self._dataset.remove_segment(update.uid) return From d192d8dfd9175fbc05eb14881e024d73111d76b6 Mon Sep 17 00:00:00 2001 From: Zachery Brady Date: Thu, 16 Aug 2018 12:58:20 -0600 Subject: [PATCH 209/236] Rewrite workspace tab logic DataSets are now directly associated with their own independent tab (instead of relying on the selected flights 'active child') Rewrite and refactor workspace tab handling to support multiple different 'workspaces' for different objects, e.g. DataSets, Flights, and Projects. Each controller object can have its own display tab class, enabling us to present different workspaces depending on the context. For example each DataSet can be opened in its own tab, allowing the user to view/modify independent datasets from the same flight concurrently. In future the idea will be to add controller specific features to the tabs, the flight tab for example should have the ability to display a map with an overlay of the flights path. --- dgp/core/controllers/project_treemodel.py | 12 +- dgp/gui/main.py | 37 ++---- dgp/gui/ui/main_window.ui | 6 +- dgp/gui/ui/transform_tab_widget.ui | 6 +- .../data_transform_widget.py} | 53 ++------ .../workspace_widget.py} | 43 +----- dgp/gui/workspaces/PlotTab.py | 95 -------------- dgp/gui/workspaces/TaskTab.py | 39 ------ dgp/gui/workspaces/__init__.py | 18 ++- dgp/gui/workspaces/dataset.py | 123 ++++++++++++++++++ dgp/gui/workspaces/flight.py | 28 ++++ dgp/gui/workspaces/project.py | 15 +++ tests/test_gui_main.py | 6 +- tests/test_workspaces.py | 36 +---- 14 files changed, 226 insertions(+), 291 deletions(-) rename dgp/gui/{workspaces/TransformTab.py => widgets/data_transform_widget.py} (84%) rename dgp/gui/{workspace.py => widgets/workspace_widget.py} (68%) delete mode 100644 dgp/gui/workspaces/PlotTab.py delete mode 100644 dgp/gui/workspaces/TaskTab.py create mode 100644 dgp/gui/workspaces/dataset.py create mode 100644 dgp/gui/workspaces/flight.py create mode 100644 dgp/gui/workspaces/project.py diff --git a/dgp/core/controllers/project_treemodel.py b/dgp/core/controllers/project_treemodel.py index 09272ed..854a89b 100644 --- a/dgp/core/controllers/project_treemodel.py +++ b/dgp/core/controllers/project_treemodel.py @@ -129,9 +129,10 @@ def item_activated(self, index: QModelIndex): """Double-click handler for View events""" item = self.itemFromIndex(index) - if isinstance(item, IFlightController): - item.get_parent().activate_child(item.uid) - self.tabOpenRequested.emit(item.uid, item, item.get_attr('name')) + if isinstance(item, IDataSetController): + flt_name = item.get_parent().get_attr('name') + label = f'{item.get_attr("name")} [{flt_name}]' + self.tabOpenRequested.emit(item.uid, item, label) elif isinstance(item, IAirborneController): for project in self.projects: if project is item: @@ -139,8 +140,9 @@ def item_activated(self, index: QModelIndex): else: project.set_active(False) self.activeProjectChanged.emit(item.get_attr('name')) - elif isinstance(item, IDataSetController): - item.get_parent().activate_child(item.uid) + self.tabOpenRequested.emit(item.uid, item, item.get_attr('name')) + elif isinstance(item, IFlightController): + self.tabOpenRequested.emit(item.uid, item, item.get_attr('name')) def project_mutated(self, project: IAirborneController): self.projectMutated.emit() diff --git a/dgp/gui/main.py b/dgp/gui/main.py index 6b671bb..e44778f 100644 --- a/dgp/gui/main.py +++ b/dgp/gui/main.py @@ -1,12 +1,13 @@ # -*- coding: utf-8 -*- import logging +import warnings from pathlib import Path import PyQt5.QtWidgets as QtWidgets from PyQt5.QtCore import Qt, pyqtSlot, pyqtSignal, QByteArray -from PyQt5.QtGui import QColor, QCloseEvent -from PyQt5.QtWidgets import QMainWindow, QProgressDialog, QFileDialog, QDialog, QMessageBox, QMenu, QApplication +from PyQt5.QtGui import QColor, QCloseEvent, QDesktopServices +from PyQt5.QtWidgets import QMainWindow, QProgressDialog, QFileDialog, QDialog, QMessageBox, QMenu from dgp.core.oid import OID from dgp.core.controllers.controller_interfaces import IBaseController @@ -18,7 +19,8 @@ LOG_COLOR_MAP, ProgressEvent, load_project_from_path) from dgp.gui.dialogs.create_project_dialog import CreateProjectDialog from dgp.gui.dialogs.recent_project_dialog import RecentProjectDialog -from dgp.gui.workspace import WorkspaceTab, MainWorkspace +from dgp.gui.widgets.workspace_widget import WorkspaceWidget, WorkspaceTab +from dgp.gui.workspaces import tab_factory from dgp.gui.ui.main_window import Ui_MainWindow @@ -32,7 +34,7 @@ def __init__(self, *args): self.title = 'Dynamic Gravity Processor [*]' self.setWindowTitle(self.title) - self.workspace: MainWorkspace + self.workspace: WorkspaceWidget self.recents = RecentProjectManager() self.user_settings = UserSettings() @@ -90,9 +92,6 @@ def _init_slots(self): # pragma: no cover self.prj_import_gps.clicked.connect(self.model.import_gps) self.prj_import_grav.clicked.connect(self.model.import_gravity) - # Tab Browser Actions # - self.workspace.currentChanged.connect(self._tab_index_changed) - # Console Window Actions # self.combo_console_verbosity.currentIndexChanged[str].connect( self.set_logging_level) @@ -265,10 +264,14 @@ def _tab_open_requested(self, uid: OID, controller: IBaseController, label: str) if tab is not None: self.workspace.setCurrentWidget(tab) else: - self.log.info("Loading flight data") - ntab = WorkspaceTab(controller) - self.workspace.addTab(ntab, label) - self.workspace.setCurrentWidget(ntab) + constructor = tab_factory(controller) + if constructor is not None: + tab = constructor(controller) + else: + warnings.warn(f"Tab control not implemented for type {type(controller)}") + return + self.workspace.addTab(tab, label) + self.workspace.setCurrentWidget(tab) @pyqtSlot(name='_project_mutated') def _project_mutated(self): @@ -279,18 +282,6 @@ def _project_mutated(self): self._mutated = True self.setWindowModified(True) - @pyqtSlot(int, name='_tab_index_changed') - def _tab_index_changed(self, index: int): - """pyqtSlot(int) - Notify the project model when the in-focus Workspace tab changes - - """ - current: WorkspaceTab = self.workspace.currentWidget() - if current is not None: - self.model.notify_tab_changed(current.root) - else: - self.log.debug("No flight tab open") - @pyqtSlot(ProgressEvent, name='_progress_event_handler') def _progress_event_handler(self, event: ProgressEvent): if event.uid in self._progress_events: diff --git a/dgp/gui/ui/main_window.ui b/dgp/gui/ui/main_window.ui index e126a28..157a27b 100644 --- a/dgp/gui/ui/main_window.ui +++ b/dgp/gui/ui/main_window.ui @@ -41,7 +41,7 @@ 0 - + @@ -650,9 +650,9 @@

dgp.gui.views.project_tree_view
- MainWorkspace + WorkspaceWidget QTabWidget -
dgp.gui.workspace
+
dgp.gui.widgets.workspace_widget
1 diff --git a/dgp/gui/ui/transform_tab_widget.ui b/dgp/gui/ui/transform_tab_widget.ui index e56a21b..a080bec 100644 --- a/dgp/gui/ui/transform_tab_widget.ui +++ b/dgp/gui/ui/transform_tab_widget.ui @@ -6,12 +6,12 @@ 0 0 - 622 - 500 + 298 + 450 - + 1 0 diff --git a/dgp/gui/workspaces/TransformTab.py b/dgp/gui/widgets/data_transform_widget.py similarity index 84% rename from dgp/gui/workspaces/TransformTab.py rename to dgp/gui/widgets/data_transform_widget.py index 4be32e8..19d3180 100644 --- a/dgp/gui/workspaces/TransformTab.py +++ b/dgp/gui/widgets/data_transform_widget.py @@ -1,21 +1,20 @@ # -*- coding: utf-8 -*- - -import logging import inspect +import logging from enum import Enum, auto from typing import List import pandas as pd -from PyQt5.QtCore import Qt, pyqtSignal, pyqtSlot +from PyQt5.QtCore import pyqtSignal, Qt, pyqtSlot from PyQt5.QtGui import QStandardItemModel, QStandardItem -from PyQt5.QtWidgets import QVBoxLayout, QWidget, QInputDialog, QTextEdit +from PyQt5.QtWidgets import QWidget, QTextEdit -from dgp.core.controllers.dataset_controller import DataSegmentController, DataSetController -from dgp.core.controllers.flight_controller import FlightController -from dgp.lib.transform.transform_graphs import SyncGravity, AirbornePost, TransformGraph -from dgp.gui.plotting.plotters import TransformPlot, AxisFormatter -from . import TaskTab -from ..ui.transform_tab_widget import Ui_TransformInterface +from core.controllers.dataset_controller import DataSetController, DataSegmentController +from gui.plotting.backends import AxisFormatter +from gui.plotting.plotters import TransformPlot +from gui.ui.transform_tab_widget import Ui_TransformInterface +from lib.transform.graph import TransformGraph +from lib.transform.transform_graphs import AirbornePost try: from pygments import highlight @@ -39,13 +38,12 @@ class TransformWidget(QWidget, Ui_TransformInterface): LATITUDE = 0x0102 LONGITUDE = 0x103 - def __init__(self, flight: FlightController): + def __init__(self, dataset: DataSetController, plotter: TransformPlot): super().__init__() self.setupUi(self) self.log = logging.getLogger(__name__) - self._flight = flight - self._dataset: DataSetController = flight.active_child - self._plot = TransformPlot() + self._dataset: DataSetController = dataset + self._plot = plotter self._mode = _Mode.NORMAL self._segment_indexes = {} @@ -93,11 +91,6 @@ def __init__(self, flight: FlightController): self.qpb_toggle_mode.clicked.connect(self._mode_toggled) self.qte_source_browser.setReadOnly(True) self.qte_source_browser.setLineWrapMode(QTextEdit.NoWrap) - self.qvbl_plot_layout = QVBoxLayout() - self._toolbar = self._plot.get_toolbar(self) - self.qvbl_plot_layout.addWidget(self._toolbar, alignment=Qt.AlignRight) - self.qvbl_plot_layout.addWidget(self._plot) - self.hlayout.addLayout(self.qvbl_plot_layout) @property def xaxis_index(self) -> int: @@ -268,25 +261,3 @@ def execute_transform(self): del self._result self._result = graph.result_df() self.result.emit() - - -class TransformTab(TaskTab): - """Sub-tab displayed within Flight tab interface. Displays interface for selecting - Transform chains and plots for displaying the resultant data sets. - """ - _name = "Transform" - - def __init__(self, label: str, flight): - super().__init__(label, flight) - - self._layout = QVBoxLayout() - self._layout.addWidget(TransformWidget(flight)) - self.setLayout(self._layout) - - def data_modified(self, action: str, dsrc): - """Slot: Called when a DataSource has been added/removed from the - Flight this tab/workspace is associated with.""" - if action.lower() == 'add': - return - elif action.lower() == 'remove': - return diff --git a/dgp/gui/workspace.py b/dgp/gui/widgets/workspace_widget.py similarity index 68% rename from dgp/gui/workspace.py rename to dgp/gui/widgets/workspace_widget.py index de1f718..e3c08f5 100644 --- a/dgp/gui/workspace.py +++ b/dgp/gui/widgets/workspace_widget.py @@ -1,50 +1,16 @@ # -*- coding: utf-8 -*- - -import logging - +import PyQt5.QtWidgets as QtWidgets from PyQt5.QtGui import QContextMenuEvent, QKeySequence from PyQt5.QtCore import Qt -from PyQt5.QtWidgets import QWidget, QVBoxLayout, QTabWidget, QAction -import PyQt5.QtWidgets as QtWidgets +from PyQt5.QtWidgets import QWidget, QAction -from dgp.core.controllers.controller_interfaces import IBaseController -from dgp.core.controllers.flight_controller import FlightController from dgp.core.oid import OID -from .workspaces import PlotTab -from .workspaces import TransformTab class WorkspaceTab(QWidget): - """Top Level Tab created for each Flight object open in the workspace""" - - def __init__(self, flight: FlightController, parent=None, flags=0, **kwargs): - super().__init__(parent=parent, flags=Qt.Widget) - self.log = logging.getLogger(__name__) - self._root: IBaseController = flight - self._layout = QVBoxLayout(self) - - # Define Sub-Tabs within Flight space e.g. Plot, Transform, Maps - self._tasktabs = QTabWidget() - self._tasktabs.setTabPosition(QTabWidget.West) - self._layout.addWidget(self._tasktabs) - - self._plot_tab = PlotTab(label="Plot", flight=self._root) - self._tasktabs.addTab(self._plot_tab, "Plot") - - self._transform_tab = TransformTab("Transforms", self._root) - self._tasktabs.addTab(self._transform_tab, "Transforms") - - self._tasktabs.setCurrentIndex(0) - self._plot_tab.update() - @property def uid(self) -> OID: - """Return the underlying Flight's UID""" - return self._root.uid - - @property - def root(self) -> IBaseController: - return self._root + raise NotImplementedError class _WorkspaceTabBar(QtWidgets.QTabBar): @@ -99,7 +65,7 @@ def _tab_left(self, *args): self.setCurrentIndex(index) -class MainWorkspace(QtWidgets.QTabWidget): +class WorkspaceWidget(QtWidgets.QTabWidget): """Custom QTabWidget promoted in main_window.ui supporting a custom TabBar which enables the attachment of custom event actions e.g. right click context-menus for the tab bar buttons.""" @@ -128,4 +94,3 @@ def close_tab(self, uid: OID): index = self.get_tab_index(uid) if index is not None: self.removeTab(index) - diff --git a/dgp/gui/workspaces/PlotTab.py b/dgp/gui/workspaces/PlotTab.py deleted file mode 100644 index 585a877..0000000 --- a/dgp/gui/workspaces/PlotTab.py +++ /dev/null @@ -1,95 +0,0 @@ -# -*- coding: utf-8 -*- -import logging - -import pandas as pd -from PyQt5.QtCore import Qt -from PyQt5.QtGui import QStandardItem -from PyQt5.QtWidgets import QVBoxLayout, QHBoxLayout, QDockWidget, QSizePolicy, QAction - -from dgp.core import StateAction, Icon -from dgp.core.controllers.dataset_controller import DataSetController -from dgp.core.controllers.flight_controller import FlightController -from dgp.gui.widgets.channel_control_widgets import ChannelController -from dgp.gui.plotting.plotters import LineUpdate, LineSelectPlot -from dgp.gui.plotting.backends import Axis -from .TaskTab import TaskTab - - -class PlotTab(TaskTab): - """Sub-tab displayed within Flight tab interface. Displays canvas for - plotting data series. - - Parameters - ---------- - label : str - flight : FlightController - - """ - - def __init__(self, label: str, flight: FlightController, **kwargs): - # TODO: It may make more sense to associate a DataSet with the plot vs a Flight - super().__init__(label, root=flight, **kwargs) - self.log = logging.getLogger(__name__) - self._dataset = flight.active_child - - self._plot = LineSelectPlot(rows=2) - self._plot.sigSegmentChanged.connect(self._on_modified_segment) - - for segment in self._dataset.segments: - group = self._plot.add_segment(segment.get_attr('start'), - segment.get_attr('stop'), - segment.get_attr('label'), - segment.uid, emit=False) - segment.add_reference(group) - - # Create/configure the tab layout/widgets/controls - qhbl_main_layout = QHBoxLayout() - qvbl_plot_layout = QVBoxLayout() - qhbl_main_layout.addItem(qvbl_plot_layout) - self.toolbar = self._plot.get_toolbar(self) - # self.toolbar.setToolButtonStyle(Qt.ToolButtonTextBesideIcon) - qvbl_plot_layout.addWidget(self.toolbar, alignment=Qt.AlignLeft) - qvbl_plot_layout.addWidget(self._plot) - - # Toggle control to hide/show data channels dock - qa_channel_toggle = QAction(Icon.PLOT_LINE.icon(), "Data Channels", self) - qa_channel_toggle.setCheckable(True) - qa_channel_toggle.setChecked(True) - self.toolbar.addAction(qa_channel_toggle) - - # Load data channel selection widget - df = self._dataset.dataframe() - data_cols = ('gravity', 'long_accel', 'cross_accel', 'beam', 'temp', - 'pressure', 'Etemp', 'gps_week', 'gps_sow', 'lat', 'long', - 'ell_ht') - cols = [df[col] for col in df if col in data_cols] - stat_cols = [df[col] for col in df if col not in data_cols] - controller = ChannelController(self._plot, *cols, - binary_series=stat_cols, parent=self) - - dock_widget = QDockWidget("Channels") - dock_widget.setFeatures(QDockWidget.NoDockWidgetFeatures) - dock_widget.setSizePolicy(QSizePolicy(QSizePolicy.Maximum, - QSizePolicy.Preferred)) - dock_widget.setWidget(controller) - qa_channel_toggle.toggled.connect(controller.setVisible) - qhbl_main_layout.addWidget(controller) - self.setLayout(qhbl_main_layout) - - - - def _on_modified_segment(self, update: LineUpdate): - if update.action is StateAction.DELETE: - self._dataset.remove_segment(update.uid) - return - - start: pd.Timestamp = update.start - stop: pd.Timestamp = update.stop - assert isinstance(start, pd.Timestamp) - assert isinstance(stop, pd.Timestamp) - - if update.action is StateAction.UPDATE: - self._dataset.update_segment(update.uid, start, stop, update.label) - else: - seg = self._dataset.add_segment(update.uid, start, stop, update.label) - seg.add_reference(self._plot.get_segment(seg.uid)) diff --git a/dgp/gui/workspaces/TaskTab.py b/dgp/gui/workspaces/TaskTab.py deleted file mode 100644 index a58f470..0000000 --- a/dgp/gui/workspaces/TaskTab.py +++ /dev/null @@ -1,39 +0,0 @@ -# -*- coding: utf-8 -*- -import logging - -from PyQt5.QtWidgets import QWidget - -from dgp.core.oid import OID -from dgp.core.controllers.controller_interfaces import IBaseController - - -class TaskTab(QWidget): - """Base Workspace Tab Widget - Subclass to specialize function - Provides interface to root tab object e.g. Flight, DataSet and a property - to access the UID associated with this tab (via the root object) - - Parameters - ---------- - label : str - root : :class:`IBaseController` - Root project object encapsulated by this tab - parent : QWidget, Optional - Parent widget - kwargs - Key-word arguments passed to QWidget constructor - - """ - def __init__(self, label: str, root: IBaseController, parent=None, **kwargs): - super().__init__(parent, **kwargs) - self.log = logging.getLogger(__name__) - self.label = label - self._root = root - - @property - def uid(self) -> OID: - return self._root.uid - - @property - def root(self) -> IBaseController: - """Return the root data object/controller associated with this tab.""" - return self._root diff --git a/dgp/gui/workspaces/__init__.py b/dgp/gui/workspaces/__init__.py index df7aa44..15e112b 100644 --- a/dgp/gui/workspaces/__init__.py +++ b/dgp/gui/workspaces/__init__.py @@ -1,7 +1,17 @@ # -*- coding: utf-8 -*- +from dgp.core.controllers.controller_interfaces import IBaseController +from .project import ProjectTab, AirborneProjectController +from .flight import FlightTab, FlightController +from .dataset import DataSetTab, DataSetController -from .TaskTab import TaskTab -from .PlotTab import PlotTab -from .TransformTab import TransformTab +__all__ = ['ProjectTab', 'FlightTab', 'DataSetTab', 'tab_factory'] + +_tabmap = {AirborneProjectController: ProjectTab, + FlightController: FlightTab, + DataSetController: DataSetTab} + + +def tab_factory(controller: IBaseController): + """Return the workspace tab constructor for the given controller type""" + return _tabmap.get(controller.__class__, None) -__all__ = ['TaskTab', 'PlotTab', 'TransformTab'] diff --git a/dgp/gui/workspaces/dataset.py b/dgp/gui/workspaces/dataset.py new file mode 100644 index 0000000..4a5c552 --- /dev/null +++ b/dgp/gui/workspaces/dataset.py @@ -0,0 +1,123 @@ +# -*- coding: utf-8 -*- +import pandas as pd +from PyQt5 import QtWidgets +from PyQt5.QtCore import Qt +from PyQt5.QtWidgets import QWidget, QAction, QSizePolicy + +from dgp.core import StateAction, Icon +from dgp.core.controllers.dataset_controller import DataSetController +from dgp.gui.plotting.helpers import LineUpdate +from dgp.gui.plotting.plotters import LineSelectPlot, TransformPlot +from dgp.gui.widgets.channel_control_widgets import ChannelController +from dgp.gui.widgets.data_transform_widget import TransformWidget +from dgp.gui.widgets.workspace_widget import WorkspaceTab + + +class SegmentSelectTab(QWidget): + + def __init__(self, dataset: DataSetController, parent=None): + super().__init__(parent=parent, flags=Qt.Widget) + + self.dataset: DataSetController = dataset + + self._plot = LineSelectPlot(rows=2) + self._plot.sigSegmentChanged.connect(self._on_modified_segment) + + for segment in self.dataset.segments: + group = self._plot.add_segment(segment.get_attr('start'), + segment.get_attr('stop'), + segment.get_attr('label'), + segment.uid, emit=False) + segment.add_reference(group) + + # Create/configure the tab layout/widgets/controls + qhbl_main_layout = QtWidgets.QHBoxLayout() + qvbl_plot_layout = QtWidgets.QVBoxLayout() + qhbl_main_layout.addItem(qvbl_plot_layout) + self.toolbar = self._plot.get_toolbar(self) + # self.toolbar.setToolButtonStyle(Qt.ToolButtonTextBesideIcon) + qvbl_plot_layout.addWidget(self.toolbar, alignment=Qt.AlignLeft) + qvbl_plot_layout.addWidget(self._plot) + + # Toggle control to hide/show data channels dock + qa_channel_toggle = QAction(Icon.PLOT_LINE.icon(), "Data Channels", self) + qa_channel_toggle.setCheckable(True) + qa_channel_toggle.setChecked(True) + self.toolbar.addAction(qa_channel_toggle) + + # Load data channel selection widget + df = self.dataset.dataframe() + data_cols = ('gravity', 'long_accel', 'cross_accel', 'beam', 'temp', + 'pressure', 'Etemp', 'gps_week', 'gps_sow', 'lat', 'long', + 'ell_ht') + cols = [df[col] for col in df if col in data_cols] + stat_cols = [df[col] for col in df if col not in data_cols] + controller = ChannelController(self._plot, *cols, + binary_series=stat_cols, parent=self) + + qa_channel_toggle.toggled.connect(controller.setVisible) + qhbl_main_layout.addWidget(controller) + self.setLayout(qhbl_main_layout) + + def get_state(self): + # TODO + pass + + def load_state(self, state): + # TODO + pass + + def _on_modified_segment(self, update: LineUpdate): + if update.action is StateAction.DELETE: + self.dataset.remove_segment(update.uid) + return + + start: pd.Timestamp = update.start + stop: pd.Timestamp = update.stop + assert isinstance(start, pd.Timestamp) + assert isinstance(stop, pd.Timestamp) + + if update.action is StateAction.UPDATE: + self.dataset.update_segment(update.uid, start, stop, update.label) + else: + seg = self.dataset.add_segment(update.uid, start, stop, update.label) + seg.add_reference(self._plot.get_segment(seg.uid)) + + +class DataTransformTab(QWidget): + def __init__(self, dataset: DataSetController, parent=None): + super().__init__(parent=parent, flags=Qt.Widget) + layout = QtWidgets.QHBoxLayout(self) + plotter = TransformPlot(rows=1) + plotter.setSizePolicy(QSizePolicy(QSizePolicy.MinimumExpanding, QSizePolicy.MinimumExpanding)) + plot_layout = QtWidgets.QVBoxLayout() + plot_layout.addWidget(plotter.get_toolbar(self), alignment=Qt.AlignRight) + plot_layout.addWidget(plotter) + + transform_control = TransformWidget(dataset, plotter) + + layout.addWidget(transform_control, stretch=0, alignment=Qt.AlignLeft) + layout.addLayout(plot_layout, stretch=5) + + +class DataSetTab(WorkspaceTab): + """Root workspace tab for DataSet controller manipulation""" + def __init__(self, dataset: DataSetController, parent=None): + super().__init__(parent=parent, flags=Qt.Widget) + self.dataset = dataset + + layout = QtWidgets.QVBoxLayout(self) + self.workspace = QtWidgets.QTabWidget(self) + self.workspace.setTabPosition(QtWidgets.QTabWidget.West) + + segment_tab = SegmentSelectTab(dataset, parent=self) + transform_tab = DataTransformTab(dataset, parent=self) + + self.workspace.addTab(segment_tab, "Data") + self.workspace.addTab(transform_tab, "Transform") + self.workspace.setCurrentIndex(0) + layout.addWidget(self.workspace) + + @property + def uid(self): + return self.dataset.uid diff --git a/dgp/gui/workspaces/flight.py b/dgp/gui/workspaces/flight.py new file mode 100644 index 0000000..8b13378 --- /dev/null +++ b/dgp/gui/workspaces/flight.py @@ -0,0 +1,28 @@ +# -*- coding: utf-8 -*- +from PyQt5 import QtWidgets +from PyQt5.QtCore import Qt +from PyQt5.QtWidgets import QWidget + +from dgp.core.controllers.flight_controller import FlightController +from dgp.gui.widgets.workspace_widget import WorkspaceTab + + +class FlightMapTab(QWidget): + def __init__(self, flight, parent=None): + super().__init__(parent=parent, flags=Qt.Widget) + self.flight = flight + + +class FlightTab(WorkspaceTab): + def __init__(self, flight: FlightController, parent=None): + super().__init__(parent=parent, flags=Qt.Widget) + self.flight = flight + layout = QtWidgets.QHBoxLayout(self) + self.workspace = QtWidgets.QTabWidget() + self.workspace.addTab(FlightMapTab(self.flight), "Flight Map") + + layout.addWidget(self.workspace) + + @property + def uid(self): + return self.flight.uid diff --git a/dgp/gui/workspaces/project.py b/dgp/gui/workspaces/project.py new file mode 100644 index 0000000..ee9b46a --- /dev/null +++ b/dgp/gui/workspaces/project.py @@ -0,0 +1,15 @@ +# -*- coding: utf-8 -*- +from PyQt5.QtCore import Qt + +from dgp.core.controllers.project_controllers import AirborneProjectController +from dgp.gui.widgets.workspace_widget import WorkspaceTab + + +class ProjectTab(WorkspaceTab): + def __init__(self, project: AirborneProjectController, parent=None): + super().__init__(parent=parent, flags=Qt.Widget) + self.project = project + + @property + def uid(self): + return self.project.uid diff --git a/tests/test_gui_main.py b/tests/test_gui_main.py index 9a406cc..892e75e 100644 --- a/tests/test_gui_main.py +++ b/tests/test_gui_main.py @@ -2,13 +2,12 @@ # Test gui/main.py import logging -import time from pathlib import Path import pytest from PyQt5.QtCore import Qt from PyQt5.QtTest import QSignalSpy, QTest -from PyQt5.QtWidgets import QMainWindow, QFileDialog, QProgressDialog, QPushButton +from PyQt5.QtWidgets import QMainWindow, QProgressDialog, QPushButton from dgp.core.oid import OID from dgp.core.models.project import AirborneProject @@ -16,7 +15,6 @@ from dgp.core.controllers.flight_controller import FlightController from dgp.core.controllers.project_controllers import AirborneProjectController from dgp.gui.main import MainWindow -from dgp.gui.workspace import WorkspaceTab from dgp.gui.dialogs.create_project_dialog import CreateProjectDialog from dgp.gui.utils import ProgressEvent @@ -56,7 +54,7 @@ def test_MainWindow_tab_open_requested(project, window): window.model.item_activated(flt_ctrl.index()) assert 1 == len(tab_open_spy) assert 1 == window.workspace.count() - assert isinstance(window.workspace.currentWidget(), WorkspaceTab) + # assert isinstance(window.workspace.currentWidget(), DatasetWorkspaceTab) window.model.item_activated(flt_ctrl.index()) assert 2 == len(tab_open_spy) diff --git a/tests/test_workspaces.py b/tests/test_workspaces.py index 14a6bc7..d7e238a 100644 --- a/tests/test_workspaces.py +++ b/tests/test_workspaces.py @@ -2,38 +2,4 @@ # Tests for gui workspace widgets in gui/workspaces -import pytest -import pandas as pd - -from dgp.core.controllers.dataset_controller import DataSetController -from dgp.core.models.project import AirborneProject -from dgp.core.controllers.project_controllers import AirborneProjectController -from dgp.gui.workspaces import PlotTab -from dgp.gui.workspaces.TransformTab import TransformWidget, _Mode - - -def test_plot_tab_init(project: AirborneProject): - prj_ctrl = AirborneProjectController(project) - flt1_ctrl = prj_ctrl.get_child(project.flights[0].uid) - ds_ctrl = flt1_ctrl.get_child(flt1_ctrl.datamodel.datasets[0].uid) - assert isinstance(ds_ctrl, DataSetController) - assert ds_ctrl == flt1_ctrl.active_child - assert pd.DataFrame().equals(ds_ctrl.dataframe()) - - ptab = PlotTab("TestTab", flt1_ctrl) - - -def test_TransformTab_modes(prj_ctrl, flt_ctrl, gravdata): - ttab = TransformWidget(flt_ctrl) - - assert ttab._mode is _Mode.NORMAL - ttab.qpb_toggle_mode.click() - assert ttab._mode is _Mode.SEGMENTS - ttab.qpb_toggle_mode.click() - assert ttab._mode is _Mode.NORMAL - - assert 0 == len(ttab._plot.get_plot(0).curves) - ttab._add_series(gravdata['gravity']) - assert 1 == len(ttab._plot.get_plot(0).curves) - ttab._remove_series(gravdata['gravity']) - assert 0 == len(ttab._plot.get_plot(0).curves) +# TODO: Reimplement these From 3c56fa34e7791947edc02a44ecb3257d43ac6bbe Mon Sep 17 00:00:00 2001 From: Zachery Brady Date: Thu, 16 Aug 2018 13:37:44 -0600 Subject: [PATCH 210/236] Add documentation launcher and 'About' dialog. Add launcher action to help menu to load DGP documentation on read-the-docs. Add simple about dialog to the help menu. --- dgp/__init__.py | 14 ++++ dgp/core/types/enumerations.py | 8 ++ dgp/gui/main.py | 23 ++++-- dgp/gui/ui/main_window.ui | 90 +++++++++++++++++++++-- dgp/gui/ui/resources/open_in_new.png | Bin 0 -> 229 bytes dgp/gui/ui/resources/resources.qrc | 1 + dgp/gui/widgets/data_transform_widget.py | 12 +-- dgp/gui/widgets/workspace_widget.py | 4 +- 8 files changed, 134 insertions(+), 18 deletions(-) create mode 100644 dgp/gui/ui/resources/open_in_new.png diff --git a/dgp/__init__.py b/dgp/__init__.py index e69de29..852587b 100644 --- a/dgp/__init__.py +++ b/dgp/__init__.py @@ -0,0 +1,14 @@ +# -*- coding: utf-8 -*- + +__about__ = """ +DGP (Dynamic Gravity Processor) is an open source project licensed under the Apache v2 license. + +DGP is written in Python, utilizing the Qt framework via the PyQt5 Python bindings. + +Authors/Contributors: + +Daniel Aliod +Chris Bertinato +Zachery Brady + +""" diff --git a/dgp/core/types/enumerations.py b/dgp/core/types/enumerations.py index 98bb1d1..eed5e96 100644 --- a/dgp/core/types/enumerations.py +++ b/dgp/core/types/enumerations.py @@ -2,6 +2,7 @@ import logging from enum import Enum, auto +from PyQt5.QtCore import QUrl from PyQt5.QtGui import QIcon __all__ = ['StateAction', 'StateColor', 'Icon', 'ProjectTypes', @@ -100,3 +101,10 @@ class GPSFields(Enum): serial = ('datenum', 'lat', 'long', 'ell_ht') +class Links(Enum): + DEV_DOCS = "https://dgp.readthedocs.io/en/develop/" + MASTER_DOCS = "https://dgp.readthedocs.io/en/latest/" + GITHUB = "https://github.com/DynamicGravitySystems/DGP" + + def url(self): + return QUrl(self.value) diff --git a/dgp/gui/main.py b/dgp/gui/main.py index e44778f..42a3793 100644 --- a/dgp/gui/main.py +++ b/dgp/gui/main.py @@ -1,5 +1,4 @@ # -*- coding: utf-8 -*- - import logging import warnings from pathlib import Path @@ -7,9 +6,11 @@ import PyQt5.QtWidgets as QtWidgets from PyQt5.QtCore import Qt, pyqtSlot, pyqtSignal, QByteArray from PyQt5.QtGui import QColor, QCloseEvent, QDesktopServices -from PyQt5.QtWidgets import QMainWindow, QProgressDialog, QFileDialog, QDialog, QMessageBox, QMenu +from PyQt5.QtWidgets import QProgressDialog, QFileDialog, QMessageBox, QMenu +from dgp import __about__ from dgp.core.oid import OID +from dgp.core.types.enumerations import Links from dgp.core.controllers.controller_interfaces import IBaseController from dgp.core.controllers.project_controllers import AirborneProjectController from dgp.core.controllers.project_treemodel import ProjectTreeModel @@ -24,7 +25,7 @@ from dgp.gui.ui.main_window import Ui_MainWindow -class MainWindow(QMainWindow, Ui_MainWindow): +class MainWindow(QtWidgets.QMainWindow, Ui_MainWindow): """An instance of the Main Program Window""" sigStatusMessage = pyqtSignal(str) @@ -86,6 +87,10 @@ def _init_slots(self): # pragma: no cover self.action_add_flight.triggered.connect(self.model.add_flight) self.action_add_meter.triggered.connect(self.model.add_gravimeter) + # Help Menu Actions # + self.action_docs.triggered.connect(self.show_documentation) + self.action_about.triggered.connect(self.show_about) + # Project Control Buttons # self.prj_add_flight.clicked.connect(self.model.add_flight) self.prj_add_meter.clicked.connect(self.model.add_gravimeter) @@ -331,7 +336,7 @@ def save_projects(self) -> None: # Project create/open dialog functions ################################### - def new_project_dialog(self) -> QDialog: + def new_project_dialog(self) -> QtWidgets.QDialog: """pyqtSlot() Launch a :class:`CreateProjectDialog` to enable the user to create a new project instance. @@ -356,8 +361,6 @@ def open_project_dialog(self, *args): # pragma: no cover Opens an existing project within the current Project MainWindow, adding the opened project as a tree item to the Project Tree navigator. - ToDo: Add prompt or flag to launch project in new MainWindow - Parameters ---------- args @@ -370,3 +373,11 @@ def open_project_dialog(self, *args): # pragma: no cover dialog.setViewMode(QFileDialog.List) dialog.fileSelected.connect(lambda file: self.open_project(Path(file))) dialog.exec_() + + def show_documentation(self): # pragma: no cover + """Launch DGP's online documentation (RTD) in the default browser""" + QDesktopServices.openUrl(Links.DEV_DOCS.url()) + + def show_about(self): # pragma: no cover + """Display 'About' information for the DGP project""" + QMessageBox.about(self, "About DGP", __about__) diff --git a/dgp/gui/ui/main_window.ui b/dgp/gui/ui/main_window.ui index 157a27b..58f7309 100644 --- a/dgp/gui/ui/main_window.ui +++ b/dgp/gui/ui/main_window.ui @@ -68,7 +68,8 @@ Help - + + @@ -252,6 +253,7 @@ + @@ -262,7 +264,7 @@ - 242 + 248 246 @@ -422,8 +424,14 @@ - + + + + 0 + 0 + + Debug @@ -464,13 +472,26 @@ - + <html><head/><body><p align="right">Logging Level:</p></body></html> + + + + Qt::Horizontal + + + + 40 + 20 + + + + @@ -479,10 +500,17 @@ - + + + + :/icons/open_in_new:/icons/open_in_new + Documentation + + View Online Documentation + F1 @@ -642,6 +670,26 @@ Toggle the Project Sidebar + + + true + + + + :/icons/console:/icons/console + + + Debug Console + + + Toggle Debug Console + + + + + About + + @@ -775,5 +823,37 @@ + + info_dock + visibilityChanged(bool) + action_debug_Console + setChecked(bool) + + + 744 + 991 + + + -1 + -1 + + + + + action_debug_Console + toggled(bool) + info_dock + setVisible(bool) + + + -1 + -1 + + + 744 + 991 + + + diff --git a/dgp/gui/ui/resources/open_in_new.png b/dgp/gui/ui/resources/open_in_new.png new file mode 100644 index 0000000000000000000000000000000000000000..2ee464bf45419585711402bc675545784554030b GIT binary patch literal 229 zcmeAS@N?(olHy`uVBq!ia0vp^Dj>|k0wldT1B8Lp8c!F;kP61PR}HxiIY_WR{K)lf z+C1fJAKkJyUt9D*aF1tSQnGqnV(S)3v3Tv7;r~832C1~H8XG?G;jx_T{HDTsveSm=Pkp!!is`rg5MOcQ`2NkEZi_c$EP0yjvg_y>)8DDT dxtOy9;~yxwnI0&Yiv_xy!PC{xWt~$(695Y@Sv~*& literal 0 HcmV?d00001 diff --git a/dgp/gui/ui/resources/resources.qrc b/dgp/gui/ui/resources/resources.qrc index e04cdc5..7765cc3 100644 --- a/dgp/gui/ui/resources/resources.qrc +++ b/dgp/gui/ui/resources/resources.qrc @@ -1,5 +1,6 @@ + open_in_new.png select.png console.png chevron_left.png diff --git a/dgp/gui/widgets/data_transform_widget.py b/dgp/gui/widgets/data_transform_widget.py index 19d3180..fb0ad85 100644 --- a/dgp/gui/widgets/data_transform_widget.py +++ b/dgp/gui/widgets/data_transform_widget.py @@ -9,12 +9,12 @@ from PyQt5.QtGui import QStandardItemModel, QStandardItem from PyQt5.QtWidgets import QWidget, QTextEdit -from core.controllers.dataset_controller import DataSetController, DataSegmentController -from gui.plotting.backends import AxisFormatter -from gui.plotting.plotters import TransformPlot -from gui.ui.transform_tab_widget import Ui_TransformInterface -from lib.transform.graph import TransformGraph -from lib.transform.transform_graphs import AirbornePost +from dgp.core.controllers.dataset_controller import DataSetController, DataSegmentController +from dgp.gui.plotting.backends import AxisFormatter +from dgp.gui.plotting.plotters import TransformPlot +from dgp.gui.ui.transform_tab_widget import Ui_TransformInterface +from dgp.lib.transform.graph import TransformGraph +from dgp.lib.transform.transform_graphs import AirbornePost try: from pygments import highlight diff --git a/dgp/gui/widgets/workspace_widget.py b/dgp/gui/widgets/workspace_widget.py index e3c08f5..ee1a15c 100644 --- a/dgp/gui/widgets/workspace_widget.py +++ b/dgp/gui/widgets/workspace_widget.py @@ -68,7 +68,9 @@ def _tab_left(self, *args): class WorkspaceWidget(QtWidgets.QTabWidget): """Custom QTabWidget promoted in main_window.ui supporting a custom TabBar which enables the attachment of custom event actions e.g. right - click context-menus for the tab bar buttons.""" + click context-menus for the tab bar buttons. + + """ def __init__(self, parent=None): super().__init__(parent=parent) self.setTabBar(_WorkspaceTabBar()) From 6961779c60f2c15d02fc7fe973a7d44297b335f3 Mon Sep 17 00:00:00 2001 From: Zachery Brady Date: Fri, 17 Aug 2018 12:45:09 -0600 Subject: [PATCH 211/236] Add sensor linkage to data-set controllers. Enable linking (referencing) of Gravimeters to a DataSet/Controller Add simple ComboBox dialog action on DataSetController to allow linking Refactor add_flight_dialog to remove references to sensor linkage, as flights do not directly associate with a sensor any longer. Fix Dataset controller sensor linking behavior. Change logo on recent project dialog. --- dgp/core/controllers/dataset_controller.py | 44 +++++++++--- dgp/core/controllers/project_controllers.py | 10 +-- dgp/gui/dialogs/add_flight_dialog.py | 9 --- dgp/gui/ui/add_flight_dialog.ui | 78 +++++++-------------- dgp/gui/ui/recent_project_dialog.ui | 15 ++-- dgp/gui/ui/resources/resources.qrc | 1 - tests/test_project_treemodel.py | 6 -- 7 files changed, 73 insertions(+), 90 deletions(-) diff --git a/dgp/core/controllers/dataset_controller.py b/dgp/core/controllers/dataset_controller.py index 02bb3e9..5ea34d8 100644 --- a/dgp/core/controllers/dataset_controller.py +++ b/dgp/core/controllers/dataset_controller.py @@ -4,10 +4,12 @@ from pathlib import Path from typing import List, Union, Generator, Set +from PyQt5.QtWidgets import QInputDialog from pandas import DataFrame, Timestamp, concat from PyQt5.QtCore import Qt from PyQt5.QtGui import QColor, QBrush, QStandardItemModel, QStandardItem +from dgp.core.controllers.gravimeter_controller import GravimeterController from dgp.core.oid import OID from dgp.core.types.enumerations import Icon from dgp.core.hdf5_manager import HDF5Manager @@ -18,7 +20,7 @@ from dgp.gui.plotting.helpers import LinearSegmentGroup from dgp.lib.etc import align_frames -from .controller_interfaces import IFlightController, IDataSetController, IBaseController +from .controller_interfaces import IFlightController, IDataSetController, IBaseController, IAirborneController from .project_containers import ProjectFolder from .datafile_controller import DataFileController @@ -83,7 +85,6 @@ def __init__(self, dataset: DataSet, flight: IFlightController): super().__init__() self._dataset = dataset self._flight: IFlightController = flight - self._project = self._flight.project self._active = False self.log = logging.getLogger(__name__) @@ -105,6 +106,13 @@ def __init__(self, dataset: DataSet, flight: IFlightController): self.appendRow(self._traj_file) self.appendRow(self._segments) + self._sensor = None + if dataset.sensor is not None: + ctrl = self.project.get_child(dataset.sensor.uid) + if ctrl is not None: + self._sensor = ctrl.clone() + self.appendRow(self._sensor) + self._gravity: DataFrame = DataFrame() self._trajectory: DataFrame = DataFrame() self._dataframe: DataFrame = DataFrame() @@ -115,12 +123,12 @@ def __init__(self, dataset: DataSet, flight: IFlightController): ('addAction', ('Set Name', self._set_name)), ('addAction', ('Set Active', lambda: self.get_parent().activate_child(self.uid))), ('addAction', (Icon.METER.icon(), 'Set Sensor', - self._set_sensor_dlg)), + self._action_set_sensor_dlg)), ('addSeparator', ()), ('addAction', (Icon.GRAVITY.icon(), 'Import Gravity', - lambda: self._project.load_file_dlg(DataType.GRAVITY, dataset=self))), + lambda: self.project.load_file_dlg(DataType.GRAVITY, dataset=self))), ('addAction', (Icon.TRAJECTORY.icon(), 'Import Trajectory', - lambda: self._project.load_file_dlg(DataType.TRAJECTORY, dataset=self))), + lambda: self.project.load_file_dlg(DataType.TRAJECTORY, dataset=self))), ('addAction', ('Align Data', self.align)), ('addSeparator', ()), ('addAction', ('Delete', lambda: self.get_parent().remove_child(self.uid))), @@ -134,6 +142,10 @@ def clone(self): def uid(self) -> OID: return self._dataset.uid + @property + def project(self) -> IAirborneController: + return self._flight.get_parent() + @property def hdfpath(self) -> Path: return self._flight.get_parent().hdfpath @@ -307,6 +319,22 @@ def _set_name(self): if name: self.set_attr('name', name) - def _set_sensor_dlg(self): - # TODO: Dialog to enable selection of sensor assoc with the dataset - pass + def _action_set_sensor_dlg(self): + sensors = {} + for i in range(self.project.meter_model.rowCount()): + sensor = self.project.meter_model.item(i) + sensors[sensor.text()] = sensor + + item, ok = QInputDialog.getItem(self.parent_widget, "Select Gravimeter", + "Sensor", sensors.keys(), editable=False) + if ok: + if self._sensor is not None: + self.removeRow(self._sensor.row()) + + sensor: GravimeterController = sensors[item] + self.set_attr('sensor', sensor) + self._sensor: GravimeterController = sensor.clone() + self.appendRow(self._sensor) + + def _action_delete(self, confirm: bool = True): + self.get_parent().remove_child(self.uid, confirm) diff --git a/dgp/core/controllers/project_controllers.py b/dgp/core/controllers/project_controllers.py index 763d398..9451a66 100644 --- a/dgp/core/controllers/project_controllers.py +++ b/dgp/core/controllers/project_controllers.py @@ -67,14 +67,16 @@ def __init__(self, project: AirborneProject, path: Path = None): self._child_map = {Flight: self.flights, Gravimeter: self.meters} - for flight in self.project.flights: - controller = FlightController(flight, project=self) - self.flights.appendRow(controller) - + # It is important that GravimeterControllers are defined before Flights + # Flights may create references to a Gravimeter object, but not vice versa for meter in self.project.gravimeters: controller = GravimeterController(meter, parent=self) self.meters.appendRow(controller) + for flight in self.project.flights: + controller = FlightController(flight, project=self) + self.flights.appendRow(controller) + self._bindings = [ ('addAction', ('Set Project Name', self.set_name)), ('addAction', ('Show in Explorer', diff --git a/dgp/gui/dialogs/add_flight_dialog.py b/dgp/gui/dialogs/add_flight_dialog.py index c25e394..6e86144 100644 --- a/dgp/gui/dialogs/add_flight_dialog.py +++ b/dgp/gui/dialogs/add_flight_dialog.py @@ -21,9 +21,6 @@ def __init__(self, project: IAirborneController, flight: IFlightController = Non self._project = project self._flight = flight - self.cb_gravimeters.setModel(project.meter_model) - self.qpb_add_sensor.clicked.connect(self._project.add_gravimeter_dlg) - # Configure Form Validation self._name_validator = QRegExpValidator(QRegExp("[A-Za-z]+.{2,20}")) self.qle_flight_name.setValidator(self._name_validator) @@ -53,11 +50,6 @@ def accept(self): sequence = self.qsb_sequence.value() duration = self.qsb_duration.value() - meter = self.cb_gravimeters.currentData(role=Qt.UserRole) # type: Gravimeter - - # TODO: Add meter association to flight - # how to make a reference that can be retrieved after loading from JSON? - if self._flight is not None: # Existing flight - update self._flight.set_attr('name', name) @@ -65,7 +57,6 @@ def accept(self): self._flight.set_attr('notes', notes) self._flight.set_attr('sequence', sequence) self._flight.set_attr('duration', duration) - # self._flight.add_child(meter) else: # Create new flight and add it to project flt = Flight(self.qle_flight_name.text(), date=date, diff --git a/dgp/gui/ui/add_flight_dialog.ui b/dgp/gui/ui/add_flight_dialog.ui index 1305d6b..1894247 100644 --- a/dgp/gui/ui/add_flight_dialog.ui +++ b/dgp/gui/ui/add_flight_dialog.ui @@ -6,8 +6,8 @@ 0 0 - 550 - 466 + 405 + 583 @@ -40,7 +40,11 @@ - + + + Required: Specify a name/reference for this flight + + @@ -77,7 +81,11 @@ - + + + [Optional] Set the flight sequence within the project + + @@ -87,64 +95,28 @@ - - - - - - Sensor - - - cb_gravimeters + + + [Optional] Set the duration of the flight (hours) - - - - - - - 0 - 0 - - - - - - - - Add Sensor... - - - - - - + Flight Notes - - + + + + [Optional] Add notes regarding this flight + + - - - - Qt::Vertical - - - - 20 - 40 - - - - @@ -153,7 +125,11 @@ - + + + false + + diff --git a/dgp/gui/ui/recent_project_dialog.ui b/dgp/gui/ui/recent_project_dialog.ui index e5db9e7..c499d4d 100644 --- a/dgp/gui/ui/recent_project_dialog.ui +++ b/dgp/gui/ui/recent_project_dialog.ui @@ -6,8 +6,8 @@ 0 0 - 604 - 620 + 475 + 752 @@ -24,13 +24,6 @@ :/images/geoid:/images/geoid - - - - <html><head/><body><p align="center"><span style=" font-size:16pt; font-weight:600; color:#55557f;">Dynamic Gravity Processor</span></p></body></html> - - - @@ -40,10 +33,10 @@ - :/images/geoid + :/icons/dgp - true + false Qt::AlignCenter diff --git a/dgp/gui/ui/resources/resources.qrc b/dgp/gui/ui/resources/resources.qrc index 7765cc3..87abf95 100644 --- a/dgp/gui/ui/resources/resources.qrc +++ b/dgp/gui/ui/resources/resources.qrc @@ -31,7 +31,6 @@ chevron_right.png - dgp-splash.png geoid.png diff --git a/tests/test_project_treemodel.py b/tests/test_project_treemodel.py index 7c5af0b..1d8e341 100644 --- a/tests/test_project_treemodel.py +++ b/tests/test_project_treemodel.py @@ -46,10 +46,4 @@ def test_ProjectTreeModel_item_activated(prj_ctrl: AirborneProjectController, parent=model.index(prj_ctrl.row(), 0))) assert not flt_ctrl.is_active model.item_activated(fc1_index) - assert flt_ctrl.is_active assert 1 == len(tabOpen_spy) - assert flt_ctrl is prj_ctrl.active_child - - _no_exist_uid = OID() - assert prj_ctrl.activate_child(_no_exist_uid) is None - From f3ee07473f331d51d0fc46476eed0fda021d0a1b Mon Sep 17 00:00:00 2001 From: Zachery Brady Date: Tue, 21 Aug 2018 11:25:39 -0600 Subject: [PATCH 212/236] Implement basic state restoration for segment selection tab. Implemented a simple state save/load mechanism utilizing QSettings enabling the application to automatically load/plot whichever channels were active in the plot when the tab or application was closed. This will pave the way for a standard interface for all workspace tabs to implement similar persistent state tracking mechanisms. --- dgp/__main__.py | 7 ++- dgp/core/controllers/dataset_controller.py | 2 +- dgp/gui/widgets/channel_control_widgets.py | 27 ++++++++-- dgp/gui/widgets/workspace_widget.py | 14 ++++- dgp/gui/workspaces/dataset.py | 61 ++++++++++++++++------ 5 files changed, 87 insertions(+), 24 deletions(-) diff --git a/dgp/__main__.py b/dgp/__main__.py index be64076..06901d4 100644 --- a/dgp/__main__.py +++ b/dgp/__main__.py @@ -9,10 +9,9 @@ from PyQt5.QtWidgets import QApplication, QSplashScreen from dgp.gui.main import MainWindow -# sys.path.append(os.path.dirname(__file__)) -def excepthook(type_, value, traceback_): +def excepthook(type_, value, traceback_): # pragma: no cover """This allows IDE to properly display unhandled exceptions which are otherwise silently ignored as the application is terminated. Override default excepthook with @@ -28,11 +27,11 @@ def excepthook(type_, value, traceback_): _align = Qt.AlignBottom | Qt.AlignHCenter -def main(): +def main(): # pragma: no cover global app sys.excepthook = excepthook app = QApplication(sys.argv) - splash = QSplashScreen(QPixmap(":/images/splash")) + splash = QSplashScreen(QPixmap(":/icons/dgp_large")) splash.showMessage("Loading Dynamic Gravity Processor", _align) splash.show() time.sleep(.5) diff --git a/dgp/core/controllers/dataset_controller.py b/dgp/core/controllers/dataset_controller.py index 5ea34d8..76f62b1 100644 --- a/dgp/core/controllers/dataset_controller.py +++ b/dgp/core/controllers/dataset_controller.py @@ -108,7 +108,7 @@ def __init__(self, dataset: DataSet, flight: IFlightController): self._sensor = None if dataset.sensor is not None: - ctrl = self.project.get_child(dataset.sensor.uid) + ctrl = self._project.get_child(dataset.sensor.uid) if ctrl is not None: self._sensor = ctrl.clone() self.appendRow(self._sensor) diff --git a/dgp/gui/widgets/channel_control_widgets.py b/dgp/gui/widgets/channel_control_widgets.py index 646b611..a5d2c18 100644 --- a/dgp/gui/widgets/channel_control_widgets.py +++ b/dgp/gui/widgets/channel_control_widgets.py @@ -5,9 +5,10 @@ from weakref import WeakValueDictionary from PyQt5.QtCore import Qt, pyqtSignal, QModelIndex, QAbstractItemModel, QSize, QPoint -from PyQt5.QtGui import QStandardItem, QStandardItemModel, QMouseEvent, QColor, QPalette, QBrush +from PyQt5.QtGui import QStandardItem, QStandardItemModel, QMouseEvent, QColor, QPalette from PyQt5.QtWidgets import (QWidget, QVBoxLayout, QListView, QMenu, QAction, - QSizePolicy, QStyledItemDelegate, QStyleOptionViewItem, QHBoxLayout, QLabel, + QSizePolicy, QStyledItemDelegate, + QStyleOptionViewItem, QHBoxLayout, QLabel, QColorDialog, QToolButton, QFrame, QComboBox) from pandas import Series from pyqtgraph import PlotDataItem @@ -291,7 +292,7 @@ def __init__(self, plotter: GridPlotWidget, *series: Series, self._series: Dict[OID, Series] = {} self._active: Dict[OID, PlotDataItem] = WeakValueDictionary() - self._indexes: Dict[OID, object] = {} + self._indexes: Dict[OID, Tuple[int, int, Axis]] = {} self._colors = itertools.cycle(LINE_COLORS) @@ -332,6 +333,22 @@ def __init__(self, plotter: GridPlotWidget, *series: Series, self._layout.addWidget(self.binary_view, stretch=1) + def get_state(self): + active_state = {} + for uid, item in self._active.items(): + row, col, axis = self._indexes[uid] + active_state[item.name()] = row, col, axis.value + return active_state + + def restore_state(self, state: Dict[str, Tuple[int, int, str]]): + for i in range(self._model.rowCount()): + item: ChannelItem = self._model.item(i, 0) + if item.name in state: + key = state[item.name] + item.set_visible(True, emit=False) + item.set_row(key[0], emit=False) + item.set_axis(Axis(key[2]), emit=True) + def channel_changed(self, item: ChannelItem): item.update(emit=False) if item.uid in self._active: # Channel is already somewhere on the plot @@ -384,6 +401,7 @@ def _channels_cleared(self): def binary_changed(self, item: QStandardItem): if item.checkState() == Qt.Checked: if item.uid in self._active: + # DEBUG print(f'Binary channel already plotted') return else: @@ -391,6 +409,7 @@ def binary_changed(self, item: QStandardItem): line = self.plotter.add_series(series, 1, 0, axis=Axis.RIGHT) self._active[item.uid] = line else: + # DEBUG print(f"Un-plotting binary area for {item.text()}") line = self._active[item.uid] self.plotter.remove_plotitem(line) @@ -398,6 +417,8 @@ def binary_changed(self, item: QStandardItem): def _context_menu(self, point: QPoint): index: QModelIndex = self.series_view.indexAt(point) if not index.isValid(): + # DEBUG print("Providing general context menu (clear items)") else: + # DEBUG print(f'Providing menu for item {self._model.itemFromIndex(index).text()}') diff --git a/dgp/gui/widgets/workspace_widget.py b/dgp/gui/widgets/workspace_widget.py index ee1a15c..9bd5734 100644 --- a/dgp/gui/widgets/workspace_widget.py +++ b/dgp/gui/widgets/workspace_widget.py @@ -12,6 +12,10 @@ class WorkspaceTab(QWidget): def uid(self) -> OID: raise NotImplementedError + @property + def title(self) -> str: + raise NotImplementedError + class _WorkspaceTabBar(QtWidgets.QTabBar): """Custom Tab Bar to allow us to implement a custom Context Menu to @@ -74,7 +78,7 @@ class WorkspaceWidget(QtWidgets.QTabWidget): def __init__(self, parent=None): super().__init__(parent=parent) self.setTabBar(_WorkspaceTabBar()) - self.tabCloseRequested.connect(self.removeTab) + self.tabCloseRequested.connect(self.close_tab_by_index) def widget(self, index: int) -> WorkspaceTab: return super().widget(index) @@ -92,7 +96,15 @@ def get_tab_index(self, uid: OID): if uid == self.widget(i).uid: return i + def close_tab_by_index(self, index: int): + tab = self.widget(index) + tab.close() + self.removeTab(index) + def close_tab(self, uid: OID): + tab = self.get_tab(uid) + if tab is not None: + tab.close() index = self.get_tab_index(uid) if index is not None: self.removeTab(index) diff --git a/dgp/gui/workspaces/dataset.py b/dgp/gui/workspaces/dataset.py index 4a5c552..ad8e4c4 100644 --- a/dgp/gui/workspaces/dataset.py +++ b/dgp/gui/workspaces/dataset.py @@ -1,11 +1,15 @@ # -*- coding: utf-8 -*- +import json + import pandas as pd from PyQt5 import QtWidgets from PyQt5.QtCore import Qt +from PyQt5.QtGui import QCloseEvent from PyQt5.QtWidgets import QWidget, QAction, QSizePolicy from dgp.core import StateAction, Icon from dgp.core.controllers.dataset_controller import DataSetController +from dgp.gui.settings import settings from dgp.gui.plotting.helpers import LineUpdate from dgp.gui.plotting.plotters import LineSelectPlot, TransformPlot from dgp.gui.widgets.channel_control_widgets import ChannelController @@ -14,11 +18,12 @@ class SegmentSelectTab(QWidget): + """Sub-tab displayed within the DataSetTab Workspace""" def __init__(self, dataset: DataSetController, parent=None): super().__init__(parent=parent, flags=Qt.Widget) - self.dataset: DataSetController = dataset + self._state = {} self._plot = LineSelectPlot(rows=2) self._plot.sigSegmentChanged.connect(self._on_modified_segment) @@ -35,7 +40,6 @@ def __init__(self, dataset: DataSetController, parent=None): qvbl_plot_layout = QtWidgets.QVBoxLayout() qhbl_main_layout.addItem(qvbl_plot_layout) self.toolbar = self._plot.get_toolbar(self) - # self.toolbar.setToolButtonStyle(Qt.ToolButtonTextBesideIcon) qvbl_plot_layout.addWidget(self.toolbar, alignment=Qt.AlignLeft) qvbl_plot_layout.addWidget(self._plot) @@ -52,20 +56,34 @@ def __init__(self, dataset: DataSetController, parent=None): 'ell_ht') cols = [df[col] for col in df if col in data_cols] stat_cols = [df[col] for col in df if col not in data_cols] - controller = ChannelController(self._plot, *cols, - binary_series=stat_cols, parent=self) + self.controller = ChannelController(self._plot, *cols, + binary_series=stat_cols, parent=self) - qa_channel_toggle.toggled.connect(controller.setVisible) - qhbl_main_layout.addWidget(controller) + qa_channel_toggle.toggled.connect(self.controller.setVisible) + qhbl_main_layout.addWidget(self.controller) self.setLayout(qhbl_main_layout) def get_state(self): - # TODO - pass + """Get the current state of the dataset workspace - def load_state(self, state): - # TODO - pass + The 'state' of the workspace refers to things which we would like the + ability to restore based on user preferences when they next load the tab + + This may include which channels are plotted, and on which plot/axis. + This may also include the plot configuration, e.g. how many rows/columns + and perhaps visibility settings (grid alpha, line alpha, axis display) + + Returns + ------- + dict + Dictionary of state key/values, possibly nested + + """ + return self.controller.get_state() + + def restore_state(self, state): + print(f"Restoring state from {state}") + self.controller.restore_state(state) def _on_modified_segment(self, update: LineUpdate): if update.action is StateAction.DELETE: @@ -99,25 +117,38 @@ def __init__(self, dataset: DataSetController, parent=None): layout.addWidget(transform_control, stretch=0, alignment=Qt.AlignLeft) layout.addLayout(plot_layout, stretch=5) + def restore_state(self, state): + pass + class DataSetTab(WorkspaceTab): """Root workspace tab for DataSet controller manipulation""" + def __init__(self, dataset: DataSetController, parent=None): super().__init__(parent=parent, flags=Qt.Widget) self.dataset = dataset + ws_settings: dict = json.loads(settings().value(f'workspaces/{dataset.uid!s}', '{}')) + layout = QtWidgets.QVBoxLayout(self) self.workspace = QtWidgets.QTabWidget(self) self.workspace.setTabPosition(QtWidgets.QTabWidget.West) - segment_tab = SegmentSelectTab(dataset, parent=self) - transform_tab = DataTransformTab(dataset, parent=self) + self.segment_tab = SegmentSelectTab(dataset, parent=self) + self.segment_tab.restore_state(ws_settings.get('segment', {})) + self.transform_tab = DataTransformTab(dataset, parent=self) + self.transform_tab.restore_state(ws_settings.get('transform', {})) - self.workspace.addTab(segment_tab, "Data") - self.workspace.addTab(transform_tab, "Transform") + self.workspace.addTab(self.segment_tab, "Data") + self.workspace.addTab(self.transform_tab, "Transform") self.workspace.setCurrentIndex(0) layout.addWidget(self.workspace) @property def uid(self): return self.dataset.uid + + def closeEvent(self, event: QCloseEvent): + state = json.dumps({'segment': self.segment_tab.get_state()}) + settings().setValue(f'workspaces/{self.dataset.uid!s}', state) + event.accept() From c0a33a88105d515943a745cefb5101d4b638f5dd Mon Sep 17 00:00:00 2001 From: Zachery Brady Date: Tue, 21 Aug 2018 14:14:56 -0600 Subject: [PATCH 213/236] Refactor workspace tab bases. Add tab persistent state handling Move WorkspaceTab into workspaces/bases.py Add SubTab base class for nested tabs in the workspace. Define basic interface for saving/restoring persistent state of tabs Refactor project_treemodel to simplify item_activated logic --- dgp/core/controllers/project_treemodel.py | 25 ++------ dgp/gui/main.py | 16 ++---- dgp/gui/widgets/workspace_widget.py | 19 +++---- dgp/gui/workspaces/base.py | 69 +++++++++++++++++++++++ dgp/gui/workspaces/dataset.py | 46 ++++++++++----- dgp/gui/workspaces/flight.py | 6 +- dgp/gui/workspaces/project.py | 6 +- 7 files changed, 128 insertions(+), 59 deletions(-) create mode 100644 dgp/gui/workspaces/base.py diff --git a/dgp/core/controllers/project_treemodel.py b/dgp/core/controllers/project_treemodel.py index 854a89b..e2b3fa7 100644 --- a/dgp/core/controllers/project_treemodel.py +++ b/dgp/core/controllers/project_treemodel.py @@ -44,22 +44,11 @@ class ProjectTreeModel(QStandardItemModel): Signal emitted to request a QProgressDialog from the main window. ProgressEvent is passed defining the parameters for the progress bar - Notes - ----- - ProjectTreeModel loosely conforms to the IParent interface, and uses method - names reflecting the projects that it contains as children. - Part of the reason for this naming scheme is the conflict of the 'child' - property defined in IParent with the child() method of QObject (inherited - by QStandardItemModel). - So, although the ProjectTreeModel tries to conform with the overall parent - interface model, the relationship between Projects and the TreeModel is - special. - """ activeProjectChanged = pyqtSignal(str) projectMutated = pyqtSignal() projectClosed = pyqtSignal(OID) - tabOpenRequested = pyqtSignal(OID, object, str) + tabOpenRequested = pyqtSignal(OID, object) tabCloseRequested = pyqtSignal(OID) progressNotificationRequested = pyqtSignal(ProgressEvent) @@ -127,22 +116,16 @@ def item_selected(self, index: QModelIndex): def item_activated(self, index: QModelIndex): """Double-click handler for View events""" - item = self.itemFromIndex(index) - if isinstance(item, IDataSetController): - flt_name = item.get_parent().get_attr('name') - label = f'{item.get_attr("name")} [{flt_name}]' - self.tabOpenRequested.emit(item.uid, item, label) - elif isinstance(item, IAirborneController): + if isinstance(item, IAirborneController): for project in self.projects: if project is item: project.set_active(True) else: project.set_active(False) self.activeProjectChanged.emit(item.get_attr('name')) - self.tabOpenRequested.emit(item.uid, item, item.get_attr('name')) - elif isinstance(item, IFlightController): - self.tabOpenRequested.emit(item.uid, item, item.get_attr('name')) + + self.tabOpenRequested.emit(item.uid, item) def project_mutated(self, project: IAirborneController): self.projectMutated.emit() diff --git a/dgp/gui/main.py b/dgp/gui/main.py index 42a3793..494eed2 100644 --- a/dgp/gui/main.py +++ b/dgp/gui/main.py @@ -252,31 +252,25 @@ def _update_recent_menu(self): for ref in recents: self.recent_menu.addAction(ref.name, lambda: self.open_project(Path(ref.path))) - def _tab_open_requested(self, uid: OID, controller: IBaseController, label: str): + def _tab_open_requested(self, uid: OID, controller: IBaseController): """pyqtSlot(OID, IBaseController, str) Parameters ---------- uid controller - label - - Returns - ------- """ - tab = self.workspace.get_tab(uid) - if tab is not None: - self.workspace.setCurrentWidget(tab) + existing = self.workspace.get_tab(uid) + if existing is not None: + self.workspace.setCurrentWidget(existing) else: constructor = tab_factory(controller) if constructor is not None: tab = constructor(controller) + self.workspace.addTab(tab) else: warnings.warn(f"Tab control not implemented for type {type(controller)}") - return - self.workspace.addTab(tab, label) - self.workspace.setCurrentWidget(tab) @pyqtSlot(name='_project_mutated') def _project_mutated(self): diff --git a/dgp/gui/widgets/workspace_widget.py b/dgp/gui/widgets/workspace_widget.py index 9bd5734..ef8ecfa 100644 --- a/dgp/gui/widgets/workspace_widget.py +++ b/dgp/gui/widgets/workspace_widget.py @@ -2,19 +2,10 @@ import PyQt5.QtWidgets as QtWidgets from PyQt5.QtGui import QContextMenuEvent, QKeySequence from PyQt5.QtCore import Qt -from PyQt5.QtWidgets import QWidget, QAction +from PyQt5.QtWidgets import QAction from dgp.core.oid import OID - - -class WorkspaceTab(QWidget): - @property - def uid(self) -> OID: - raise NotImplementedError - - @property - def title(self) -> str: - raise NotImplementedError +from ..workspaces.base import WorkspaceTab class _WorkspaceTabBar(QtWidgets.QTabBar): @@ -83,6 +74,12 @@ def __init__(self, parent=None): def widget(self, index: int) -> WorkspaceTab: return super().widget(index) + def addTab(self, tab: WorkspaceTab, label: str = None): + if label is None: + label = tab.title + super().addTab(tab, label) + self.setCurrentWidget(tab) + # Utility functions for referencing Tab widgets by OID def get_tab(self, uid: OID): diff --git a/dgp/gui/workspaces/base.py b/dgp/gui/workspaces/base.py new file mode 100644 index 0000000..98aa01f --- /dev/null +++ b/dgp/gui/workspaces/base.py @@ -0,0 +1,69 @@ +# -*- coding: utf-8 -*- +from PyQt5.QtCore import pyqtSignal +from PyQt5.QtGui import QCloseEvent +from PyQt5.QtWidgets import QWidget + +from dgp.core import OID + +__all__ = ['WorkspaceTab', 'SubTab'] + + +class WorkspaceTab(QWidget): + @property + def uid(self) -> OID: + raise NotImplementedError + + @property + def title(self) -> str: + raise NotImplementedError + + def save_state(self) -> None: + """Save/dump the current state of the WorkspaceTab + + This method is called when the tab is closed, and should be used to + retrieve and store the state of the WorkspaceTab and its sub-tabs or + other components. + + Override this method to provide state handling for a WorkspaceTab + """ + pass + + def closeEvent(self, event: QCloseEvent): + self.save_state() + event.accept() + + +class SubTab(QWidget): + sigLoaded = pyqtSignal(object) + + def get_state(self): + """Get a representation of the current state of the SubTab + + This method should be overridden by sub-classes of SubTab, in order to + provide a tab/context specific state representation. + + The returned dictionary and all of its values (including nested dicts) + must be serializable by the default Python json serializer. + + The state dictionary returned by this method will be supplied to the + restore_state method when the tab is loaded. + + Returns + ------- + dict + dict of JSON serializable key: value pairs + + """ + return {} + + def restore_state(self, state: dict) -> None: + """Restore the tab to reflect the saved state supplied to this method + + Parameters + ---------- + state : dict + Dictionary containing the state representation for this object. As + produced by :meth:`get_state` + + """ + pass diff --git a/dgp/gui/workspaces/dataset.py b/dgp/gui/workspaces/dataset.py index ad8e4c4..aca5d33 100644 --- a/dgp/gui/workspaces/dataset.py +++ b/dgp/gui/workspaces/dataset.py @@ -5,7 +5,7 @@ from PyQt5 import QtWidgets from PyQt5.QtCore import Qt from PyQt5.QtGui import QCloseEvent -from PyQt5.QtWidgets import QWidget, QAction, QSizePolicy +from PyQt5.QtWidgets import QAction, QSizePolicy from dgp.core import StateAction, Icon from dgp.core.controllers.dataset_controller import DataSetController @@ -14,12 +14,11 @@ from dgp.gui.plotting.plotters import LineSelectPlot, TransformPlot from dgp.gui.widgets.channel_control_widgets import ChannelController from dgp.gui.widgets.data_transform_widget import TransformWidget -from dgp.gui.widgets.workspace_widget import WorkspaceTab +from .base import WorkspaceTab, SubTab -class SegmentSelectTab(QWidget): +class SegmentSelectTab(SubTab): """Sub-tab displayed within the DataSetTab Workspace""" - def __init__(self, dataset: DataSetController, parent=None): super().__init__(parent=parent, flags=Qt.Widget) self.dataset: DataSetController = dataset @@ -36,9 +35,9 @@ def __init__(self, dataset: DataSetController, parent=None): segment.add_reference(group) # Create/configure the tab layout/widgets/controls - qhbl_main_layout = QtWidgets.QHBoxLayout() + qhbl_main_layout = QtWidgets.QHBoxLayout(self) qvbl_plot_layout = QtWidgets.QVBoxLayout() - qhbl_main_layout.addItem(qvbl_plot_layout) + qhbl_main_layout.addLayout(qvbl_plot_layout) self.toolbar = self._plot.get_toolbar(self) qvbl_plot_layout.addWidget(self.toolbar, alignment=Qt.AlignLeft) qvbl_plot_layout.addWidget(self._plot) @@ -102,7 +101,7 @@ def _on_modified_segment(self, update: LineUpdate): seg.add_reference(self._plot.get_segment(seg.uid)) -class DataTransformTab(QWidget): +class DataTransformTab(SubTab): def __init__(self, dataset: DataSetController, parent=None): super().__init__(parent=parent, flags=Qt.Widget) layout = QtWidgets.QHBoxLayout(self) @@ -117,6 +116,11 @@ def __init__(self, dataset: DataSetController, parent=None): layout.addWidget(transform_control, stretch=0, alignment=Qt.AlignLeft) layout.addLayout(plot_layout, stretch=5) + self.sigLoaded.emit(self) + + def get_state(self): + pass + def restore_state(self, state): pass @@ -128,27 +132,41 @@ def __init__(self, dataset: DataSetController, parent=None): super().__init__(parent=parent, flags=Qt.Widget) self.dataset = dataset - ws_settings: dict = json.loads(settings().value(f'workspaces/{dataset.uid!s}', '{}')) + self.ws_settings: dict = json.loads(settings().value(f'workspaces/{dataset.uid!s}', '{}')) layout = QtWidgets.QVBoxLayout(self) self.workspace = QtWidgets.QTabWidget(self) self.workspace.setTabPosition(QtWidgets.QTabWidget.West) + layout.addWidget(self.workspace) self.segment_tab = SegmentSelectTab(dataset, parent=self) - self.segment_tab.restore_state(ws_settings.get('segment', {})) + self.segment_tab.sigLoaded.connect(self._tab_loaded) self.transform_tab = DataTransformTab(dataset, parent=self) - self.transform_tab.restore_state(ws_settings.get('transform', {})) + self.transform_tab.sigLoaded.connect(self._tab_loaded) self.workspace.addTab(self.segment_tab, "Data") self.workspace.addTab(self.transform_tab, "Transform") self.workspace.setCurrentIndex(0) - layout.addWidget(self.workspace) + + @property + def title(self): + return f'{self.dataset.get_attr("name")} ' \ + f'[{self.dataset.parent().get_attr("name")}]' @property def uid(self): return self.dataset.uid - def closeEvent(self, event: QCloseEvent): - state = json.dumps({'segment': self.segment_tab.get_state()}) + def _tab_loaded(self, tab: SubTab): + state = self.ws_settings.get(tab.__class__.__name__, {}) + tab.restore_state(state) + + def save_state(self): + """Save current sub-tabs state then accept close event.""" + raw_state = {} + for i in range(self.workspace.count()): + tab: SubTab = self.workspace.widget(i) + raw_state[tab.__class__.__name__] = tab.get_state() + + state = json.dumps(raw_state) settings().setValue(f'workspaces/{self.dataset.uid!s}', state) - event.accept() diff --git a/dgp/gui/workspaces/flight.py b/dgp/gui/workspaces/flight.py index 8b13378..7425bfb 100644 --- a/dgp/gui/workspaces/flight.py +++ b/dgp/gui/workspaces/flight.py @@ -4,7 +4,7 @@ from PyQt5.QtWidgets import QWidget from dgp.core.controllers.flight_controller import FlightController -from dgp.gui.widgets.workspace_widget import WorkspaceTab +from .base import WorkspaceTab class FlightMapTab(QWidget): @@ -23,6 +23,10 @@ def __init__(self, flight: FlightController, parent=None): layout.addWidget(self.workspace) + @property + def title(self): + return f'{self.flight.get_attr("name")}' + @property def uid(self): return self.flight.uid diff --git a/dgp/gui/workspaces/project.py b/dgp/gui/workspaces/project.py index ee9b46a..6eaee10 100644 --- a/dgp/gui/workspaces/project.py +++ b/dgp/gui/workspaces/project.py @@ -2,7 +2,7 @@ from PyQt5.QtCore import Qt from dgp.core.controllers.project_controllers import AirborneProjectController -from dgp.gui.widgets.workspace_widget import WorkspaceTab +from .base import WorkspaceTab class ProjectTab(WorkspaceTab): @@ -10,6 +10,10 @@ def __init__(self, project: AirborneProjectController, parent=None): super().__init__(parent=parent, flags=Qt.Widget) self.project = project + @property + def title(self) -> str: + return f'{self.project.get_attr("name")}' + @property def uid(self): return self.project.uid From ca3ae11c2341e3132a8ad6d34209194358f011b8 Mon Sep 17 00:00:00 2001 From: Zachery Brady Date: Tue, 21 Aug 2018 14:20:01 -0600 Subject: [PATCH 214/236] Refactor ChannelController, thread loading of dataset tab. Refactor ChannelController so that series may be added after initialization. Add logic to Dataset SegmentSelectTab to use a QThread to load the dataset's DataFrame, making the launching of tabs more responsive. --- dgp/gui/widgets/channel_control_widgets.py | 44 +++++++++++++++------- dgp/gui/workspaces/dataset.py | 22 ++++++----- 2 files changed, 44 insertions(+), 22 deletions(-) diff --git a/dgp/gui/widgets/channel_control_widgets.py b/dgp/gui/widgets/channel_control_widgets.py index a5d2c18..fa98a0b 100644 --- a/dgp/gui/widgets/channel_control_widgets.py +++ b/dgp/gui/widgets/channel_control_widgets.py @@ -283,7 +283,6 @@ def __init__(self, plotter: GridPlotWidget, *series: Series, self.plotter.sigPlotCleared.connect(self._channels_cleared) self.setSizePolicy(QSizePolicy(QSizePolicy.Maximum, QSizePolicy.Preferred)) self._layout = QVBoxLayout(self) - binary_series = binary_series or [] self._model = QStandardItemModel() self._model.itemChanged.connect(self.channel_changed) @@ -296,18 +295,6 @@ def __init__(self, plotter: GridPlotWidget, *series: Series, self._colors = itertools.cycle(LINE_COLORS) - for s in series: - item = ChannelItem(s.name, QColor(next(self._colors))) - self._series[item.uid] = s - self._model.appendRow(item) - - for b in binary_series: - item = QStandardItem(b.name) - item.uid = OID() - item.setCheckable(True) - self._series[item.uid] = b - self._binary_model.appendRow(item) - # Define/configure List Views series_delegate = ChannelDelegate(rows=self.plotter.rows, parent=self) self.series_view = QListView(parent=self) @@ -333,6 +320,30 @@ def __init__(self, plotter: GridPlotWidget, *series: Series, self._layout.addWidget(self.binary_view, stretch=1) + self.set_series(*series) + binary_series = binary_series or [] + self.set_binary_series(*binary_series) + + def set_series(self, *series, clear=True): + if clear: + self._model.clear() + + for s in series: + item = ChannelItem(s.name, QColor(next(self._colors))) + self._series[item.uid] = s + self._model.appendRow(item) + + def set_binary_series(self, *series, clear=True): + if clear: + self._binary_model.clear() + + for b in series: + item = QStandardItem(b.name) + item.uid = OID() + item.setCheckable(True) + self._series[item.uid] = b + self._binary_model.appendRow(item) + def get_state(self): active_state = {} for uid, item in self._active.items(): @@ -349,6 +360,11 @@ def restore_state(self, state: Dict[str, Tuple[int, int, str]]): item.set_row(key[0], emit=False) item.set_axis(Axis(key[2]), emit=True) + for i in range(self._binary_model.rowCount()): + item: QStandardItem = self._binary_model.item(i, 0) + if item.text() in state: + item.setCheckState(Qt.Checked) + def channel_changed(self, item: ChannelItem): item.update(emit=False) if item.uid in self._active: # Channel is already somewhere on the plot @@ -390,6 +406,7 @@ def _update_series(self, item: ChannelItem): def _remove_series(self, item: ChannelItem): line = self._active[item.uid] self.plotter.remove_plotitem(line) + del self._indexes[item.uid] def _channels_cleared(self): """Respond to plot notification that all lines have been cleared""" @@ -408,6 +425,7 @@ def binary_changed(self, item: QStandardItem): series = self._series[item.uid] line = self.plotter.add_series(series, 1, 0, axis=Axis.RIGHT) self._active[item.uid] = line + self._indexes[item.uid] = 1, 0, Axis.RIGHT else: # DEBUG print(f"Un-plotting binary area for {item.text()}") diff --git a/dgp/gui/workspaces/dataset.py b/dgp/gui/workspaces/dataset.py index aca5d33..d01ab53 100644 --- a/dgp/gui/workspaces/dataset.py +++ b/dgp/gui/workspaces/dataset.py @@ -4,7 +4,6 @@ import pandas as pd from PyQt5 import QtWidgets from PyQt5.QtCore import Qt -from PyQt5.QtGui import QCloseEvent from PyQt5.QtWidgets import QAction, QSizePolicy from dgp.core import StateAction, Icon @@ -14,6 +13,7 @@ from dgp.gui.plotting.plotters import LineSelectPlot, TransformPlot from dgp.gui.widgets.channel_control_widgets import ChannelController from dgp.gui.widgets.data_transform_widget import TransformWidget +from dgp.gui.utils import ThreadedFunction from .base import WorkspaceTab, SubTab @@ -42,25 +42,30 @@ def __init__(self, dataset: DataSetController, parent=None): qvbl_plot_layout.addWidget(self.toolbar, alignment=Qt.AlignLeft) qvbl_plot_layout.addWidget(self._plot) + self.controller = ChannelController(self._plot, parent=self) + qhbl_main_layout.addWidget(self.controller) + # Toggle control to hide/show data channels dock qa_channel_toggle = QAction(Icon.PLOT_LINE.icon(), "Data Channels", self) qa_channel_toggle.setCheckable(True) qa_channel_toggle.setChecked(True) + qa_channel_toggle.toggled.connect(self.controller.setVisible) self.toolbar.addAction(qa_channel_toggle) # Load data channel selection widget - df = self.dataset.dataframe() + th = ThreadedFunction(self.dataset.dataframe, parent=self) + th.result.connect(self._dataframe_loaded) + th.start() + + def _dataframe_loaded(self, df): data_cols = ('gravity', 'long_accel', 'cross_accel', 'beam', 'temp', 'pressure', 'Etemp', 'gps_week', 'gps_sow', 'lat', 'long', 'ell_ht') cols = [df[col] for col in df if col in data_cols] stat_cols = [df[col] for col in df if col not in data_cols] - self.controller = ChannelController(self._plot, *cols, - binary_series=stat_cols, parent=self) - - qa_channel_toggle.toggled.connect(self.controller.setVisible) - qhbl_main_layout.addWidget(self.controller) - self.setLayout(qhbl_main_layout) + self.controller.set_series(*cols) + self.controller.set_binary_series(*stat_cols) + self.sigLoaded.emit(self) def get_state(self): """Get the current state of the dataset workspace @@ -81,7 +86,6 @@ def get_state(self): return self.controller.get_state() def restore_state(self, state): - print(f"Restoring state from {state}") self.controller.restore_state(state) def _on_modified_segment(self, update: LineUpdate): From 140de7eab661e9296cd61daf257b7cfa1918ea0d Mon Sep 17 00:00:00 2001 From: Zachery Brady Date: Tue, 21 Aug 2018 14:34:34 -0600 Subject: [PATCH 215/236] Add segment visibility toggle to LineSelectPlot Add toolbar action to LSP toolbar to toggle the visibility of data segment selections on the plot. --- dgp/core/types/enumerations.py | 1 + dgp/gui/plotting/helpers.py | 5 +++++ dgp/gui/plotting/plotters.py | 13 ++++++++++++- 3 files changed, 18 insertions(+), 1 deletion(-) diff --git a/dgp/core/types/enumerations.py b/dgp/core/types/enumerations.py index eed5e96..06e3ff9 100644 --- a/dgp/core/types/enumerations.py +++ b/dgp/core/types/enumerations.py @@ -47,6 +47,7 @@ class Icon(Enum): LINE_MODE = "line_mode" PLOT_LINE = "plot_line" SETTINGS = "settings" + SELECT = "select" INFO = "info" HELP = "help_outline" GRID = "grid_on" diff --git a/dgp/gui/plotting/helpers.py b/dgp/gui/plotting/helpers.py index 6f3c33d..6d00223 100644 --- a/dgp/gui/plotting/helpers.py +++ b/dgp/gui/plotting/helpers.py @@ -327,6 +327,11 @@ def set_movable(self, movable: bool): for segment in self._segments: segment.setMovable(movable) + def set_visibility(self, visible: bool): + for segment in self._segments: + segment.setVisible(visible) + segment._label.setVisible(visible) + def delete(self): """Delete all child segments and emit a DELETE update""" for segment in self._segments: diff --git a/dgp/gui/plotting/plotters.py b/dgp/gui/plotting/plotters.py index 407c21f..e59211d 100644 --- a/dgp/gui/plotting/plotters.py +++ b/dgp/gui/plotting/plotters.py @@ -192,14 +192,25 @@ def onclick(self, ev): # pragma: no cover def get_toolbar(self, parent=None): toolbar = super().get_toolbar(parent) - action_mode = QAction(Icon.LINE_MODE.icon(), "Toggle Selection Mode", self) + action_mode = QAction(Icon.SELECT.icon(), "Toggle Selection Mode", self) action_mode.setCheckable(True) action_mode.setChecked(self.selection_mode) action_mode.toggled.connect(self.set_select_mode) toolbar.addAction(action_mode) + action_seg_visibility = QAction(Icon.LINE_MODE.icon(), + "Toggle Segment Visibility", self) + action_seg_visibility.setCheckable(True) + action_seg_visibility.setChecked(True) + action_seg_visibility.toggled.connect(self.set_segment_visibility) + toolbar.addAction(action_seg_visibility) + return toolbar + def set_segment_visibility(self, state: bool): + for segment in self._segments.values(): + segment.set_visibility(state) + def _check_proximity(self, x, span, proximity=0.03) -> bool: """Check the proximity of a mouse click at location 'x' in relation to any already existing LinearRegions. From 725cd82f76ffa65e82e91a1ab7a23c75cc9f0216 Mon Sep 17 00:00:00 2001 From: Zachery Brady Date: Fri, 24 Aug 2018 09:09:39 -0600 Subject: [PATCH 216/236] Cleanup: Remove unused code, add docstrings, cleanup imports Fix documentation build errors due to refactored sources --- dgp/__init__.py | 13 +++--- dgp/core/controllers/dataset_controller.py | 12 +++--- dgp/core/controllers/project_controllers.py | 6 ++- dgp/core/controllers/project_treemodel.py | 43 +++----------------- dgp/core/models/flight.py | 2 +- dgp/core/models/project.py | 2 +- dgp/gui/main.py | 44 ++++++++------------- dgp/gui/plotting/__init__.py | 7 ++++ dgp/gui/plotting/backends.py | 13 +++--- dgp/gui/settings.py | 4 +- dgp/gui/utils.py | 7 ++-- dgp/gui/workspaces/__init__.py | 11 ++++-- dgp/gui/workspaces/base.py | 16 +++++++- dgp/gui/workspaces/dataset.py | 16 ++++---- docs/source/core/models.rst | 12 +++--- tests/test_gui_main.py | 1 - 16 files changed, 94 insertions(+), 115 deletions(-) diff --git a/dgp/__init__.py b/dgp/__init__.py index 852587b..6010a08 100644 --- a/dgp/__init__.py +++ b/dgp/__init__.py @@ -1,14 +1,13 @@ # -*- coding: utf-8 -*- +__version__ = "0.1.0" -__about__ = """ -DGP (Dynamic Gravity Processor) is an open source project licensed under the Apache v2 license. +__about__ = f""" +DGP version {__version__} -DGP is written in Python, utilizing the Qt framework via the PyQt5 Python bindings. +DGP (Dynamic Gravity Processor) is an open source project licensed under the Apache v2 license. -Authors/Contributors: +The source for DGP is available at https://github.com/DynamicGravitySystems/DGP -Daniel Aliod -Chris Bertinato -Zachery Brady +DGP is written in Python, utilizing the Qt framework with the PyQt5 Python bindings. """ diff --git a/dgp/core/controllers/dataset_controller.py b/dgp/core/controllers/dataset_controller.py index 76f62b1..1e53fdb 100644 --- a/dgp/core/controllers/dataset_controller.py +++ b/dgp/core/controllers/dataset_controller.py @@ -9,18 +9,18 @@ from PyQt5.QtCore import Qt from PyQt5.QtGui import QColor, QBrush, QStandardItemModel, QStandardItem -from dgp.core.controllers.gravimeter_controller import GravimeterController -from dgp.core.oid import OID -from dgp.core.types.enumerations import Icon +from dgp.core import OID, Icon from dgp.core.hdf5_manager import HDF5Manager -from dgp.core.controllers import controller_helpers from dgp.core.models.datafile import DataFile from dgp.core.models.dataset import DataSet, DataSegment from dgp.core.types.enumerations import DataType, StateColor from dgp.gui.plotting.helpers import LinearSegmentGroup from dgp.lib.etc import align_frames -from .controller_interfaces import IFlightController, IDataSetController, IBaseController, IAirborneController +from . import controller_helpers +from .gravimeter_controller import GravimeterController +from .controller_interfaces import (IFlightController, IDataSetController, + IBaseController, IAirborneController) from .project_containers import ProjectFolder from .datafile_controller import DataFileController @@ -108,7 +108,7 @@ def __init__(self, dataset: DataSet, flight: IFlightController): self._sensor = None if dataset.sensor is not None: - ctrl = self._project.get_child(dataset.sensor.uid) + ctrl = self.project.get_child(dataset.sensor.uid) if ctrl is not None: self._sensor = ctrl.clone() self.appendRow(self._sensor) diff --git a/dgp/core/controllers/project_controllers.py b/dgp/core/controllers/project_controllers.py index 9451a66..58dfc56 100644 --- a/dgp/core/controllers/project_controllers.py +++ b/dgp/core/controllers/project_controllers.py @@ -6,7 +6,7 @@ from typing import Union, List, Generator, cast from PyQt5.QtCore import Qt, QRegExp -from PyQt5.QtGui import QColor, QStandardItemModel, QIcon, QRegExpValidator +from PyQt5.QtGui import QColor, QStandardItemModel, QRegExpValidator from pandas import DataFrame from .project_treemodel import ProjectTreeModel @@ -293,7 +293,9 @@ def _on_load(datafile: DataFile, params: dict, parent: IDataSetController): else: self.log.error("Unrecognized data group: " + datafile.group) return - progress_event = ProgressEvent(self.uid, f"Loading {datafile.group.value}", stop=0) + progress_event = ProgressEvent(self.uid, f"Loading " + f"{datafile.group.value}", + stop=0) self.get_parent().progressNotificationRequested.emit(progress_event) loader = FileLoader(datafile.source_path, method, parent=self.parent_widget, **params) diff --git a/dgp/core/controllers/project_treemodel.py b/dgp/core/controllers/project_treemodel.py index e2b3fa7..80e88f4 100644 --- a/dgp/core/controllers/project_treemodel.py +++ b/dgp/core/controllers/project_treemodel.py @@ -2,14 +2,13 @@ import logging from typing import Optional, Generator, Union -from PyQt5.QtCore import QObject, QModelIndex, pyqtSignal, QSortFilterProxyModel, Qt +from PyQt5.QtCore import QObject, QModelIndex, pyqtSignal from PyQt5.QtGui import QStandardItemModel -from dgp.core.types.enumerations import DataType -from dgp.core.oid import OID +from dgp.core import OID, DataType from dgp.core.controllers.controller_interfaces import (IFlightController, IAirborneController, - IDataSetController) + IBaseController) from dgp.core.controllers.controller_helpers import confirm_action from dgp.gui.utils import ProgressEvent @@ -107,9 +106,6 @@ def remove_project(self, child: IAirborneController, confirm: bool = True) -> No def close_flight(self, flight: IFlightController): self.tabCloseRequested.emit(flight.uid) - def notify_tab_changed(self, flight: IFlightController): - flight.get_parent().activate_child(flight.uid) - def item_selected(self, index: QModelIndex): """Single-click handler for View events""" pass @@ -117,6 +113,9 @@ def item_selected(self, index: QModelIndex): def item_activated(self, index: QModelIndex): """Double-click handler for View events""" item = self.itemFromIndex(index) + if not isinstance(item, IBaseController): + return + if isinstance(item, IAirborneController): for project in self.projects: if project is item: @@ -157,33 +156,3 @@ def add_flight(self): # pragma: no cover def _warn_no_active_project(self): self.log.warning("No active projects.") - - -# Experiment -class ProjectTreeProxyModel(QSortFilterProxyModel): # pragma: no cover - """Experiment to filter tree model to a subset - not working currently, may require - more detailed custom implementation of QAbstractProxyModel - """ - def __init__(self, parent=None): - super().__init__(parent) - self._filter_type = None - self.setRecursiveFilteringEnabled(True) - - def setFilterType(self, obj: type): - self._filter_type = obj - - def sourceModel(self) -> QStandardItemModel: - return super().sourceModel() - - def filterAcceptsRow(self, source_row: int, source_parent: QModelIndex): - index: QModelIndex = self.sourceModel().index(source_row, 0, source_parent) - item = self.sourceModel().itemFromIndex(index) - print(item) - data = self.sourceModel().data(index, self.filterRole()) - disp = self.sourceModel().data(index, Qt.DisplayRole) - - res = isinstance(data, self._filter_type) - print("Result is: %s for row %d" % (str(res), source_row)) - print("Row display value: " + str(disp)) - - return res diff --git a/dgp/core/models/flight.py b/dgp/core/models/flight.py index 580e04e..9062759 100644 --- a/dgp/core/models/flight.py +++ b/dgp/core/models/flight.py @@ -17,7 +17,7 @@ class Flight: The :class:`Flight` contains meta-data common to the overall flight date flown, duration, notes, etc. - The Flight is also the parent container for 1 or more :class:`DataSet`s + The Flight is also the parent container for 1 or more :class:`DataSet` s which group the Trajectory and Gravity data collected during a flight, and can define segments of data (flight lines), based on the flight path. diff --git a/dgp/core/models/project.py b/dgp/core/models/project.py index 1d39cb0..be36589 100644 --- a/dgp/core/models/project.py +++ b/dgp/core/models/project.py @@ -346,7 +346,7 @@ class AirborneProject(GravityProject): This class is a sub-class of :class:`GravityProject` and simply extends the functionality of the base GravityProject, allowing the addition/removal - of :class:`Flight` objects, in addition to :class:`Gravimeter`s + of :class:`Flight` objects, in addition to :class:`Gravimeter` s Parameters ---------- diff --git a/dgp/gui/main.py b/dgp/gui/main.py index 494eed2..7783e54 100644 --- a/dgp/gui/main.py +++ b/dgp/gui/main.py @@ -20,7 +20,7 @@ LOG_COLOR_MAP, ProgressEvent, load_project_from_path) from dgp.gui.dialogs.create_project_dialog import CreateProjectDialog from dgp.gui.dialogs.recent_project_dialog import RecentProjectDialog -from dgp.gui.widgets.workspace_widget import WorkspaceWidget, WorkspaceTab +from dgp.gui.widgets.workspace_widget import WorkspaceWidget from dgp.gui.workspaces import tab_factory from dgp.gui.ui.main_window import Ui_MainWindow @@ -33,11 +33,7 @@ def __init__(self, *args): super().__init__(*args) self.setupUi(self) self.title = 'Dynamic Gravity Processor [*]' - self.setWindowTitle(self.title) - self.workspace: WorkspaceWidget - self.recents = RecentProjectManager() - self.user_settings = UserSettings() # Attach to the root logger to capture all child events self.log = logging.getLogger() @@ -50,6 +46,11 @@ def __init__(self, *args): self.log.addHandler(sb_handler) self.log.setLevel(logging.DEBUG) + self.workspace: WorkspaceWidget + self.recents = RecentProjectManager() + self.user_settings = UserSettings() + self._progress_events = {} + # Instantiate the Project Model and display in the ProjectTreeView self.model = ProjectTreeModel(parent=self) self.project_tree.setModel(self.model) @@ -58,22 +59,17 @@ def __init__(self, *args): self.recent_menu = QMenu("Recent Projects") self.menuFile.addMenu(self.recent_menu) - # Initialize Variables self.import_base_path = Path('~').expanduser().joinpath('Desktop') self._default_status_timeout = 5000 # Status Msg timeout in milli-sec - self._progress_events = {} - self._mutated = False - self._init_slots() - - def _init_slots(self): # pragma: no cover - """Initialize PyQt Signals/Slots for UI Buttons and Menus""" + # Initialize signal/slot connections: # Model Event Signals # self.model.tabOpenRequested.connect(self._tab_open_requested) self.model.tabCloseRequested.connect(self.workspace.close_tab) self.model.progressNotificationRequested.connect(self._progress_event_handler) self.model.projectMutated.connect(self._project_mutated) + self.model.projectClosed.connect(lambda x: self._update_recent_menu()) # File Menu Actions # self.action_exit.triggered.connect(self.close) @@ -103,7 +99,6 @@ def _init_slots(self): # pragma: no cover # Define recent projects menu action self.recents.sigRecentProjectsChanged.connect(self._update_recent_menu) - self.model.projectClosed.connect(lambda x: self._update_recent_menu()) self._update_recent_menu() def load(self, project: GravityProject = None, restore: bool = True): @@ -242,6 +237,12 @@ def show_status(self, text, level): self.statusBar().showMessage(text, self._default_status_timeout) def _update_recent_menu(self): + """Regenerate the recent projects' menu actions + + Retrieves the recent projects references from the + :class:`RecentProjectManager` and adds them to the recent projects list + if they are not already active/open in the workspace. + """ self.recent_menu.clear() recents = [ref for ref in self.recents.project_refs if ref.uid not in [p.uid for p in self.model.projects]] @@ -270,15 +271,15 @@ def _tab_open_requested(self, uid: OID, controller: IBaseController): tab = constructor(controller) self.workspace.addTab(tab) else: - warnings.warn(f"Tab control not implemented for type {type(controller)}") + warnings.warn(f"Tab control not implemented for type " + f"{type(controller)}") @pyqtSlot(name='_project_mutated') def _project_mutated(self): """pyqtSlot(None) - Update the MainWindow title bar to reflect unsaved changes in the project + Update the MainWindow title bar to reflect unsaved changes in the project """ - self._mutated = True self.setWindowModified(True) @pyqtSlot(ProgressEvent, name='_progress_event_handler') @@ -312,17 +313,6 @@ def _progress_event_handler(self, event: ProgressEvent): dlg.show() self._progress_events[event.uid] = dlg - def show_progress_status(self, start, stop, label=None) -> QtWidgets.QProgressBar: - """Show a progress bar in the windows Status Bar""" - label = label or 'Loading' - sb = self.statusBar() # type: QtWidgets.QStatusBar - progress = QtWidgets.QProgressBar(self) - progress.setRange(start, stop) - progress.setAttribute(Qt.WA_DeleteOnClose) - progress.setToolTip(label) - sb.addWidget(progress) - return progress - def save_projects(self) -> None: self.model.save_projects() self.setWindowModified(False) diff --git a/dgp/gui/plotting/__init__.py b/dgp/gui/plotting/__init__.py index e69de29..aa4ee8c 100644 --- a/dgp/gui/plotting/__init__.py +++ b/dgp/gui/plotting/__init__.py @@ -0,0 +1,7 @@ +# -*- coding: utf-8 -*- + +__help__ = """ +Click and drag on the plot to pan +Right click and drag the plot to interactively zoom +Right click on the plot to view options specific to each plot area +""" diff --git a/dgp/gui/plotting/backends.py b/dgp/gui/plotting/backends.py index 3375b77..9ea3514 100644 --- a/dgp/gui/plotting/backends.py +++ b/dgp/gui/plotting/backends.py @@ -31,8 +31,8 @@ class Axis(Enum): RIGHT = 'right' -LINE_COLORS = {'#1f77b4', '#ff7f0e', '#2ca02c', '#d62728', '#9467bd', - '#8c564b', '#e377c2', '#7f7f7f', '#bcbd22', '#17becf'} +LINE_COLORS = ['#1f77b4', '#ff7f0e', '#2ca02c', '#d62728', '#9467bd', + '#8c564b', '#e377c2', '#7f7f7f', '#bcbd22', '#17becf'] # type aliases MaybePlot = Union['DgpPlotItem', None] @@ -704,13 +704,12 @@ def get_toolbar(self, parent=None) -> QToolBar: @staticmethod def help_dialog(parent=None): - QMessageBox.information(parent, "Plot Controls Help", - "Click and drag on the plot to pan\n" - "Right click and drag the plot to interactively zoom\n" - "Right click on the plot to view options specific to each plot area") + from . import __help__ + QMessageBox.information(parent, "Plot Controls Help", __help__) @staticmethod - def make_index(name: str, row: int, col: int = 0, axis: Axis = Axis.LEFT) -> SeriesIndex: + def make_index(name: str, row: int, col: int = 0, + axis: Axis = Axis.LEFT) -> SeriesIndex: """Generate an index referring to a specific plot curve Plot curves (items) can be uniquely identified within the GridPlotWidget diff --git a/dgp/gui/settings.py b/dgp/gui/settings.py index 053eaf5..14df76a 100644 --- a/dgp/gui/settings.py +++ b/dgp/gui/settings.py @@ -35,8 +35,8 @@ def settings() -> QSettings: class SettingsKey(Enum): - WindowState = "MainWindow/state" - WindowGeom = "MainWindow/geom" + WindowState = "Window/state" + WindowGeom = "Window/geom" LastProjectPath = "Project/latest/path" LastProjectName = "Project/latest/name" LastProjectUid = "Project/latest/uid" diff --git a/dgp/gui/utils.py b/dgp/gui/utils.py index 01e8444..eb8d082 100644 --- a/dgp/gui/utils.py +++ b/dgp/gui/utils.py @@ -2,7 +2,7 @@ import json import logging from pathlib import Path -from typing import Union, Callable +from typing import Callable from PyQt5.QtCore import QThread, pyqtSignal, pyqtBoundSignal @@ -10,7 +10,8 @@ from dgp.core.oid import OID __all__ = ['LOG_FORMAT', 'LOG_COLOR_MAP', 'LOG_LEVEL_MAP', 'ConsoleHandler', - 'ProgressEvent', 'ThreadedFunction', 'clear_signal'] + 'ProgressEvent', 'ThreadedFunction', 'clear_signal', + 'load_project_from_path'] LOG_FORMAT = logging.Formatter(fmt="%(asctime)s:%(levelname)s - %(module)s:" "%(funcName)s :: %(message)s", @@ -99,7 +100,7 @@ def run(self): res = self._functor(*self._args) self.result.emit(res) except Exception as e: - _log.exception(f"Exception executing {self.__name__}") + _log.exception(f"Exception executing {self._functor!r}") def load_project_from_path(path: Path) -> GravityProject: diff --git a/dgp/gui/workspaces/__init__.py b/dgp/gui/workspaces/__init__.py index 15e112b..eba49b9 100644 --- a/dgp/gui/workspaces/__init__.py +++ b/dgp/gui/workspaces/__init__.py @@ -1,4 +1,5 @@ # -*- coding: utf-8 -*- + from dgp.core.controllers.controller_interfaces import IBaseController from .project import ProjectTab, AirborneProjectController from .flight import FlightTab, FlightController @@ -6,12 +7,14 @@ __all__ = ['ProjectTab', 'FlightTab', 'DataSetTab', 'tab_factory'] -_tabmap = {AirborneProjectController: ProjectTab, - FlightController: FlightTab, - DataSetController: DataSetTab} +# Note: Disabled ProjectTab/FlightTab until they are implemented +_tabmap = { + # AirborneProjectController: ProjectTab, + FlightController: FlightTab, + DataSetController: DataSetTab +} def tab_factory(controller: IBaseController): """Return the workspace tab constructor for the given controller type""" return _tabmap.get(controller.__class__, None) - diff --git a/dgp/gui/workspaces/base.py b/dgp/gui/workspaces/base.py index 98aa01f..8b0f8d1 100644 --- a/dgp/gui/workspaces/base.py +++ b/dgp/gui/workspaces/base.py @@ -1,9 +1,12 @@ # -*- coding: utf-8 -*- +import json + from PyQt5.QtCore import pyqtSignal from PyQt5.QtGui import QCloseEvent from PyQt5.QtWidgets import QWidget from dgp.core import OID +from dgp.gui import settings __all__ = ['WorkspaceTab', 'SubTab'] @@ -17,7 +20,15 @@ def uid(self) -> OID: def title(self) -> str: raise NotImplementedError - def save_state(self) -> None: + @property + def state_key(self) -> str: + return f'Workspace/{self.uid!s}' + + def get_state(self) -> dict: + key = f'Workspace/{self.uid!s}' + return json.loads(settings().value(key, '{}')) + + def save_state(self, state=None) -> None: """Save/dump the current state of the WorkspaceTab This method is called when the tab is closed, and should be used to @@ -26,7 +37,8 @@ def save_state(self) -> None: Override this method to provide state handling for a WorkspaceTab """ - pass + _jsons = json.dumps(state) + settings().setValue(self.state_key, _jsons) def closeEvent(self, event: QCloseEvent): self.save_state() diff --git a/dgp/gui/workspaces/dataset.py b/dgp/gui/workspaces/dataset.py index d01ab53..d7ff9bd 100644 --- a/dgp/gui/workspaces/dataset.py +++ b/dgp/gui/workspaces/dataset.py @@ -1,6 +1,4 @@ # -*- coding: utf-8 -*- -import json - import pandas as pd from PyQt5 import QtWidgets from PyQt5.QtCore import Qt @@ -8,7 +6,6 @@ from dgp.core import StateAction, Icon from dgp.core.controllers.dataset_controller import DataSetController -from dgp.gui.settings import settings from dgp.gui.plotting.helpers import LineUpdate from dgp.gui.plotting.plotters import LineSelectPlot, TransformPlot from dgp.gui.widgets.channel_control_widgets import ChannelController @@ -136,7 +133,7 @@ def __init__(self, dataset: DataSetController, parent=None): super().__init__(parent=parent, flags=Qt.Widget) self.dataset = dataset - self.ws_settings: dict = json.loads(settings().value(f'workspaces/{dataset.uid!s}', '{}')) + self.ws_settings: dict = self.get_state() layout = QtWidgets.QVBoxLayout(self) self.workspace = QtWidgets.QTabWidget(self) @@ -162,15 +159,16 @@ def uid(self): return self.dataset.uid def _tab_loaded(self, tab: SubTab): + """Restore tab state after initial loading is complete""" state = self.ws_settings.get(tab.__class__.__name__, {}) tab.restore_state(state) - def save_state(self): + def save_state(self, state=None): """Save current sub-tabs state then accept close event.""" - raw_state = {} + state = {} for i in range(self.workspace.count()): tab: SubTab = self.workspace.widget(i) - raw_state[tab.__class__.__name__] = tab.get_state() + state[tab.__class__.__name__] = tab.get_state() + + super().save_state(state=state) - state = json.dumps(raw_state) - settings().setValue(f'workspaces/{self.dataset.uid!s}', state) diff --git a/docs/source/core/models.rst b/docs/source/core/models.rst index 6d827d3..07684be 100644 --- a/docs/source/core/models.rst +++ b/docs/source/core/models.rst @@ -17,8 +17,8 @@ The following generally describes the class hierarchy of a typical Airborne proj | :obj:`~.project.AirborneProject` | ├── :obj:`~.flight.Flight` | │ ├── :obj:`~.dataset.DataSet` -| │ │ ├── :obj:`~.data.DataFile` -- Gravity -| │ │ ├── :obj:`~.data.DataFile` -- Trajectory +| │ │ ├── :obj:`~.datafile.DataFile` -- Gravity +| │ │ ├── :obj:`~.datafile.DataFile` -- Trajectory | │ │ └── :obj:`~.dataset.DataSegment` -- Container (Multiple) | │ └── :obj:`~.meter.Gravimeter` -- Link | └── :obj:`~.meter.Gravimeter` @@ -26,7 +26,7 @@ The following generally describes the class hierarchy of a typical Airborne proj ----------------------------------------- The project can have multiple :obj:`~.flight.Flight`, and each Flight can have -0 or more :obj:`~.flight.FlightLine`, :obj:`~.data.DataFile`, and linked +0 or more :obj:`~.flight.FlightLine`, :obj:`~.datafile.DataFile`, and linked :obj:`~.meter.Gravimeter`. The project can also define multiple Gravimeters, of varying type with specific configuration files assigned to each. @@ -100,10 +100,10 @@ dgp.core.models.flight module .. automodule:: dgp.core.models.flight :undoc-members: -dgp.core.models.data module ---------------------------- +dgp.core.models.datafile module +------------------------------- -.. automodule:: dgp.core.models.data +.. automodule:: dgp.core.models.datafile :members: :undoc-members: diff --git a/tests/test_gui_main.py b/tests/test_gui_main.py index 892e75e..f5ba82b 100644 --- a/tests/test_gui_main.py +++ b/tests/test_gui_main.py @@ -54,7 +54,6 @@ def test_MainWindow_tab_open_requested(project, window): window.model.item_activated(flt_ctrl.index()) assert 1 == len(tab_open_spy) assert 1 == window.workspace.count() - # assert isinstance(window.workspace.currentWidget(), DatasetWorkspaceTab) window.model.item_activated(flt_ctrl.index()) assert 2 == len(tab_open_spy) From c99d18c96d85a6a7ff42f8c6701e44c3e0b656f6 Mon Sep 17 00:00:00 2001 From: Zachery Brady Date: Fri, 24 Aug 2018 09:30:35 -0600 Subject: [PATCH 217/236] Fix error updating binary channel state when plot clear triggered. --- dgp/gui/widgets/channel_control_widgets.py | 15 +++++++++------ 1 file changed, 9 insertions(+), 6 deletions(-) diff --git a/dgp/gui/widgets/channel_control_widgets.py b/dgp/gui/widgets/channel_control_widgets.py index fa98a0b..1cbdbaa 100644 --- a/dgp/gui/widgets/channel_control_widgets.py +++ b/dgp/gui/widgets/channel_control_widgets.py @@ -414,12 +414,13 @@ def _channels_cleared(self): item: ChannelItem = self._model.item(i) item.set_visible(False, emit=False) item.update(emit=False) + for i in range(self._binary_model.rowCount()): + item: QStandardItem = self._binary_model.item(i) + item.setCheckState(Qt.Unchecked) def binary_changed(self, item: QStandardItem): if item.checkState() == Qt.Checked: if item.uid in self._active: - # DEBUG - print(f'Binary channel already plotted') return else: series = self._series[item.uid] @@ -427,10 +428,12 @@ def binary_changed(self, item: QStandardItem): self._active[item.uid] = line self._indexes[item.uid] = 1, 0, Axis.RIGHT else: - # DEBUG - print(f"Un-plotting binary area for {item.text()}") - line = self._active[item.uid] - self.plotter.remove_plotitem(line) + try: + line = self._active[item.uid] + self.plotter.remove_plotitem(line) + except KeyError: + # Item may have already been deleted by the plot + pass def _context_menu(self, point: QPoint): index: QModelIndex = self.series_view.indexAt(point) From 8a4e600bfff5298563cb1e4f2ef446922c4bd897 Mon Sep 17 00:00:00 2001 From: Zachery Brady Date: Sun, 26 Aug 2018 11:39:15 -0600 Subject: [PATCH 218/236] Fix splash screen visibility when loading. Re-order splash screen finish trigger and main window visibility so that the splash screen correctly disappears when the UI controls have loaded. --- dgp/__main__.py | 2 +- dgp/gui/main.py | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/dgp/__main__.py b/dgp/__main__.py index 06901d4..a2c8639 100644 --- a/dgp/__main__.py +++ b/dgp/__main__.py @@ -36,9 +36,9 @@ def main(): # pragma: no cover splash.show() time.sleep(.5) window = MainWindow() + splash.finish(window) window.sigStatusMessage.connect(lambda msg: splash.showMessage(msg, _align)) window.load() - splash.finish(window) sys.exit(app.exec_()) diff --git a/dgp/gui/main.py b/dgp/gui/main.py index 7783e54..1f99d8e 100644 --- a/dgp/gui/main.py +++ b/dgp/gui/main.py @@ -128,6 +128,7 @@ def load(self, project: GravityProject = None, restore: bool = True): self.restoreState(settings().value(SettingsKey.WindowState(), QByteArray())) self.restoreGeometry(settings().value(SettingsKey.WindowGeom(), QByteArray())) + self.show() if project is not None: self.sigStatusMessage.emit(f'Loading project {project.name}') self.add_project(project) @@ -143,7 +144,6 @@ def load(self, project: GravityProject = None, restore: bool = True): recent_dlg.exec_() self.project_tree.expandAll() - self.show() def add_project(self, project: GravityProject): """Add a project model to the window, first wrapping it in an From 8550d7df17c9be6a3c022edac83b5f7f6671db7e Mon Sep 17 00:00:00 2001 From: Zachery Brady Date: Sun, 26 Aug 2018 11:45:46 -0600 Subject: [PATCH 219/236] Fix attribute error in datafile controller. Fix invalid Path construction Datafile uid property will now return None when there is no underlying datafile (i.e. we have a placeholder controller). Project model signal signature changed to permit None values as uid. main.py _tab_open_requested updated to ignore requests where UID is None. This may (should) be changed in future to remove the confusion of having 'empty' DataFileControllers. Perhaps by introducing a new type of QStandardItem subclass to be used as a placeholder, which can be replaced by a complete DFC when the data has been loaded. Fix invalid attempt to construct a pathlib.Path object from a None value in settings.py. Will now correctly check that the retrieved path is not None before constructing a Path object, which otherwise results in a TypeError. --- dgp/core/controllers/datafile_controller.py | 5 ++++- dgp/core/controllers/project_treemodel.py | 2 +- dgp/gui/main.py | 2 ++ dgp/gui/settings.py | 7 +++++-- 4 files changed, 12 insertions(+), 4 deletions(-) diff --git a/dgp/core/controllers/datafile_controller.py b/dgp/core/controllers/datafile_controller.py index 5431c3d..816768c 100644 --- a/dgp/core/controllers/datafile_controller.py +++ b/dgp/core/controllers/datafile_controller.py @@ -29,7 +29,10 @@ def __init__(self, datafile: DataFile, dataset=None): @property def uid(self) -> OID: - return self._datafile.uid + try: + return self._datafile.uid + except AttributeError: + return None @property def dataset(self) -> IDataSetController: diff --git a/dgp/core/controllers/project_treemodel.py b/dgp/core/controllers/project_treemodel.py index 80e88f4..736c411 100644 --- a/dgp/core/controllers/project_treemodel.py +++ b/dgp/core/controllers/project_treemodel.py @@ -47,7 +47,7 @@ class ProjectTreeModel(QStandardItemModel): activeProjectChanged = pyqtSignal(str) projectMutated = pyqtSignal() projectClosed = pyqtSignal(OID) - tabOpenRequested = pyqtSignal(OID, object) + tabOpenRequested = pyqtSignal(object, object) tabCloseRequested = pyqtSignal(OID) progressNotificationRequested = pyqtSignal(ProgressEvent) diff --git a/dgp/gui/main.py b/dgp/gui/main.py index 1f99d8e..b430334 100644 --- a/dgp/gui/main.py +++ b/dgp/gui/main.py @@ -262,6 +262,8 @@ def _tab_open_requested(self, uid: OID, controller: IBaseController): controller """ + if uid is None: + return existing = self.workspace.get_tab(uid) if existing is not None: self.workspace.setCurrentWidget(existing) diff --git a/dgp/gui/settings.py b/dgp/gui/settings.py index 14df76a..fe6b000 100644 --- a/dgp/gui/settings.py +++ b/dgp/gui/settings.py @@ -102,8 +102,11 @@ def project_refs(self) -> Generator[RecentProject, None, None]: yield self.model.item(i).data(RefRole) def last_project_path(self) -> MaybePath: - path = Path(self._settings.value(SettingsKey.LastProjectPath(), None)) - return path + raw_path = self._settings.value(SettingsKey.LastProjectPath(), None) + if raw_path is not None: + return Path(raw_path) + else: + return None def last_project_name(self) -> Union[str, None]: return self._settings.value(SettingsKey.LastProjectName(), None) From 6d0853e287a326eb63429b8843a7cec818cb3c73 Mon Sep 17 00:00:00 2001 From: Zachery Brady Date: Sun, 26 Aug 2018 11:51:48 -0600 Subject: [PATCH 220/236] Fix project dock visibility when main window is minimized/restored. Unsure of the root cause of this issue, but it occurs on Linux/Windows/OSX all the same. Using the toggleViewAction() method of QDockWidget to construct the QAction seems to fix the issue where the DockWidget is hidden after the Main Window has been minimized then restored. --- dgp/core/types/enumerations.py | 1 + dgp/gui/main.py | 11 +++- dgp/gui/ui/main_window.ui | 95 ---------------------------------- 3 files changed, 10 insertions(+), 97 deletions(-) diff --git a/dgp/core/types/enumerations.py b/dgp/core/types/enumerations.py index 06e3ff9..6b72eb6 100644 --- a/dgp/core/types/enumerations.py +++ b/dgp/core/types/enumerations.py @@ -52,6 +52,7 @@ class Icon(Enum): HELP = "help_outline" GRID = "grid_on" NO_GRID = "grid_off" + TREE = "tree" def icon(self, prefix="icons"): return QIcon(f':/{prefix}/{self.value}') diff --git a/dgp/gui/main.py b/dgp/gui/main.py index b430334..6755352 100644 --- a/dgp/gui/main.py +++ b/dgp/gui/main.py @@ -6,11 +6,11 @@ import PyQt5.QtWidgets as QtWidgets from PyQt5.QtCore import Qt, pyqtSlot, pyqtSignal, QByteArray from PyQt5.QtGui import QColor, QCloseEvent, QDesktopServices -from PyQt5.QtWidgets import QProgressDialog, QFileDialog, QMessageBox, QMenu +from PyQt5.QtWidgets import QProgressDialog, QFileDialog, QMessageBox, QMenu, QAction from dgp import __about__ from dgp.core.oid import OID -from dgp.core.types.enumerations import Links +from dgp.core.types.enumerations import Links, Icon from dgp.core.controllers.controller_interfaces import IBaseController from dgp.core.controllers.project_controllers import AirborneProjectController from dgp.core.controllers.project_treemodel import ProjectTreeModel @@ -64,6 +64,13 @@ def __init__(self, *args): # Initialize signal/slot connections: + # Use dock's toggleViewAction to generate QAction, resolves issue where + # dock visibility would be hidden after minimizing the main window + self.action_project_dock: QAction = self.project_dock.toggleViewAction() + self.action_project_dock.setIcon(Icon.TREE.icon()) + self.toolbar.addAction(self.action_project_dock) + self.menuView.addAction(self.action_project_dock) + # Model Event Signals # self.model.tabOpenRequested.connect(self._tab_open_requested) self.model.tabCloseRequested.connect(self.workspace.close_tab) diff --git a/dgp/gui/ui/main_window.ui b/dgp/gui/ui/main_window.ui index 58f7309..2d951f8 100644 --- a/dgp/gui/ui/main_window.ui +++ b/dgp/gui/ui/main_window.ui @@ -75,7 +75,6 @@ Panels - @@ -252,7 +251,6 @@ - @@ -523,20 +521,6 @@ Ctrl+Q - - - true - - - true - - - Project - - - Alt+1 - - true @@ -655,21 +639,6 @@ Import Gravity - - - true - - - - :/icons/tree:/icons/tree - - - Project Dock - - - Toggle the Project Sidebar - - true @@ -711,38 +680,6 @@ - - action_project_dock - toggled(bool) - project_dock - setVisible(bool) - - - -1 - -1 - - - 149 - 419 - - - - - project_dock - visibilityChanged(bool) - action_project_dock - setChecked(bool) - - - 149 - 419 - - - -1 - -1 - - - action_info_dock toggled(bool) @@ -791,38 +728,6 @@ - - action_project_dock_2 - toggled(bool) - project_dock - setVisible(bool) - - - -1 - -1 - - - 135 - 459 - - - - - project_dock - visibilityChanged(bool) - action_project_dock_2 - setChecked(bool) - - - 135 - 459 - - - -1 - -1 - - - info_dock visibilityChanged(bool) From e65be71ae466dd3d58c82c4c45253fe76d94cb90 Mon Sep 17 00:00:00 2001 From: Zachery Brady Date: Tue, 21 Aug 2018 09:19:36 -0600 Subject: [PATCH 221/236] Fixup: Initial Ref-Tracking working feature-set --- dgp/core/controllers/controller_interfaces.py | 13 -- dgp/core/controllers/dataset_controller.py | 23 +- dgp/core/controllers/flight_controller.py | 33 +-- dgp/core/controllers/project_controllers.py | 29 +-- tests/test_controllers.py | 211 +----------------- tests/test_dataset_controller.py | 191 ++++++++++++++++ 6 files changed, 211 insertions(+), 289 deletions(-) create mode 100644 tests/test_dataset_controller.py diff --git a/dgp/core/controllers/controller_interfaces.py b/dgp/core/controllers/controller_interfaces.py index a437a84..c524612 100644 --- a/dgp/core/controllers/controller_interfaces.py +++ b/dgp/core/controllers/controller_interfaces.py @@ -182,19 +182,6 @@ def activate_child(self, uid: OID, exclusive: bool = True, else: return child - @property - def active_child(self) -> MaybeChild: - """Get the active child of this parent. - - Returns - ------- - IChild, None - The first active child, or None if there are no children which are - active. - - """ - return next((child for child in self.children if child.is_active), None) - class IBaseController(QStandardItem, AttributeProxy, DGPObject): @property diff --git a/dgp/core/controllers/dataset_controller.py b/dgp/core/controllers/dataset_controller.py index 1e53fdb..cb5b399 100644 --- a/dgp/core/controllers/dataset_controller.py +++ b/dgp/core/controllers/dataset_controller.py @@ -42,7 +42,7 @@ def __init__(self, segment: DataSegment, parent: IDataSetController = None, self.update() self._menu = [ - ('addAction', ('Delete', lambda: self._delete())) + ('addAction', ('Delete', self.delete)) ] @property @@ -57,8 +57,8 @@ def datamodel(self) -> DataSegment: def menu(self): return self._menu - def add_reference(self, group: LinearSegmentGroup): - self._refs.add(group) + def add_ref(self, ref): + self._refs.add(ref) def update(self): self.setText(str(self._segment)) @@ -67,7 +67,7 @@ def update(self): def clone(self) -> 'DataSegmentController': return DataSegmentController(self._segment, clone=True) - def _delete(self): + def delete(self): """Delete this data segment from any active plots (via weak ref), and from its parent DataSet/Controller @@ -146,6 +146,10 @@ def uid(self) -> OID: def project(self) -> IAirborneController: return self._flight.get_parent() + @property + def is_active(self): + return False + @property def hdfpath(self) -> Path: return self._flight.get_parent().hdfpath @@ -300,17 +304,6 @@ def update(self): self.setText(self._dataset.name) super().update() - def set_active(self, state: bool): - self._active = bool(state) - if self._active: - self.setBackground(QColor(StateColor.ACTIVE.value)) - else: - self.setBackground(QColor(StateColor.INACTIVE.value)) - - @property - def is_active(self) -> bool: - return self._active - # Context Menu Handlers def _set_name(self): name = controller_helpers.get_input("Set DataSet Name", "Enter a new name:", diff --git a/dgp/core/controllers/flight_controller.py b/dgp/core/controllers/flight_controller.py index 23c51c4..2b7d22a 100644 --- a/dgp/core/controllers/flight_controller.py +++ b/dgp/core/controllers/flight_controller.py @@ -1,7 +1,7 @@ # -*- coding: utf-8 -*- import logging -from weakref import WeakSet -from typing import Union +import weakref +from typing import Union, Generator from PyQt5.QtCore import Qt from PyQt5.QtGui import QStandardItemModel, QColor @@ -58,7 +58,7 @@ def __init__(self, flight: Flight, project: IAirborneController): self.setEditable(False) self.setBackground(QColor(StateColor.INACTIVE.value)) - self._clones = WeakSet() + self._clones = weakref.WeakSet() self._dataset_model = QStandardItemModel() for dataset in self._flight.datasets: @@ -131,32 +131,6 @@ def clone(self): self._clones.add(clone) return clone - @property - def is_active(self): - return self._active - - def set_active(self, state: bool): - self._active = bool(state) - if self._active: - self.setBackground(QColor(StateColor.ACTIVE.value)) - else: - self.setBackground(QColor(StateColor.INACTIVE.value)) - - @property - def active_child(self) -> DataSetController: - """active_child overrides method in IParent - - If no child is active, try to activate the first child (row 0) and - return the newly active child. - If the flight has no children None will be returned - - """ - child = super().active_child - if child is None and self.rowCount(): - self.activate_child(self.child(0).uid) - return self.active_child - return child - def add_child(self, child: DataSet) -> DataSetController: """Adds a child to the underlying Flight, and to the model representation for the appropriate child type. @@ -222,6 +196,7 @@ def remove_child(self, uid: Union[OID, str], confirm: bool = True) -> bool: self.parent_widget): return False + child.delete() self._flight.datasets.remove(child.datamodel) self._dataset_model.removeRow(child.row()) self.removeRow(child.row()) diff --git a/dgp/core/controllers/project_controllers.py b/dgp/core/controllers/project_controllers.py index 58dfc56..c571895 100644 --- a/dgp/core/controllers/project_controllers.py +++ b/dgp/core/controllers/project_controllers.py @@ -2,6 +2,7 @@ import functools import itertools import logging +import weakref from pathlib import Path from typing import Union, List, Generator, cast @@ -97,6 +98,7 @@ def __init__(self, project: AirborneProject, path: Path = None): 'modify_date': (False, None) } + def validator(self, key: str): # pragma: no cover if key in self._fields: return self._fields[key][1] @@ -171,15 +173,11 @@ def remove_child(self, uid: Union[OID, str], confirm: bool = True): if confirm: # pragma: no cover if not confirm_action("Confirm Deletion", "Are you sure you want to delete {!s}" - .format(child.get_attr('name')), + .format(child.get_attr('name')), parent=self.parent_widget): return - if isinstance(child, IFlightController): - try: - self.get_parent().close_flight(child) - except AttributeError: - pass + child.delete() self.project.remove_child(child.uid) self._child_map[child.datamodel.__class__].removeRow(child.row()) self.update() @@ -187,22 +185,9 @@ def remove_child(self, uid: Union[OID, str], confirm: bool = True): def get_parent(self) -> ProjectTreeModel: return self.model() - def get_child(self, uid: Union[str, OID]) -> IFlightController: - return cast(IFlightController, super().get_child(uid)) - - @property - def active_child(self) -> IFlightController: - return next((child for child in self.children if child.is_active), None) - - def activate_child(self, uid: OID, exclusive: bool = True, - emit: bool = False): - child: IFlightController = super().activate_child(uid, exclusive, False) - if emit: - try: - self.get_parent().item_activated(child.index()) - except AttributeError: - self.log.warning(f"project {self.get_attr('name')} has no parent") - return child + def get_child(self, uid: Union[str, OID]) -> Union[FlightController, + GravimeterController]: + return super().get_child(uid) def set_active(self, state: bool): self._active = bool(state) diff --git a/tests/test_controllers.py b/tests/test_controllers.py index a8d4a56..931f3cc 100644 --- a/tests/test_controllers.py +++ b/tests/test_controllers.py @@ -97,16 +97,11 @@ def test_flight_controller(project: AirborneProject): fc = prj_ctrl.add_child(flight) assert hash(fc) assert str(fc) == str(flight) - assert not fc.is_active - prj_ctrl.activate_child(fc.uid) - assert fc.is_active assert flight.uid == fc.uid assert flight.name == fc.data(Qt.DisplayRole) dsc = fc.get_child(dataset.uid) - fc.activate_child(dsc.uid) assert isinstance(dsc, DataSetController) - assert dsc == fc.active_child dataset2 = DataSet() dsc2 = fc.add_child(dataset2) @@ -115,9 +110,6 @@ def test_flight_controller(project: AirborneProject): with pytest.raises(TypeError): fc.add_child({1: "invalid child"}) - fc.activate_child(dsc.uid) - assert dsc == fc.active_child - fc.set_parent(None) with pytest.raises(KeyError): @@ -129,7 +121,6 @@ def test_flight_controller(project: AirborneProject): fc.remove_child(dsc.uid, confirm=False) assert 0 == len(fc.datamodel.datasets) - assert fc.active_child is None def test_FlightController_bindings(project: AirborneProject): @@ -143,13 +134,8 @@ def test_FlightController_bindings(project: AirborneProject): assert 2 == len(binding) assert hasattr(QMenu, binding[0]) - assert prj_ctrl.active_child is None - fc0._activate_self() - assert fc0 == prj_ctrl.active_child - assert fc0.is_active - assert fc0 == prj_ctrl.get_child(fc0.uid) - fc0._delete_self(confirm=False) + fc0._action_delete_self(confirm=False) assert prj_ctrl.get_child(fc0.uid) is None @@ -190,12 +176,6 @@ def test_airborne_project_controller(project): assert isinstance(project_ctrl.meter_model, QStandardItemModel) assert isinstance(project_ctrl.flight_model, QStandardItemModel) - assert project_ctrl.active_child is None - project_ctrl.activate_child(fc.uid) - assert fc == project_ctrl.active_child - # with pytest.raises(ValueError): - # project_ctrl.activate_child(mc) - project_ctrl.add_child(flight2) fc2 = project_ctrl.get_child(flight2.uid) @@ -218,178 +198,6 @@ def test_airborne_project_controller(project): assert isinstance(jsons, str) -def test_dataset_controller(tmpdir): - """Test DataSet controls - Load data from HDF5 Store - Behavior when incomplete (no grav or traj) - """ - hdf = Path(tmpdir).joinpath('test.hdf5') - prj = AirborneProject(name="TestPrj", path=Path(tmpdir)) - flt = Flight("TestFlt") - grav_file = DataFile(DataType.GRAVITY, datetime.now(), Path(tmpdir).joinpath('gravity.dat')) - traj_file = DataFile(DataType.TRAJECTORY, datetime.now(), Path(tmpdir).joinpath('trajectory.txt')) - ds = DataSet(grav_file, traj_file) - seg0 = DataSegment(OID(), Timestamp.now(), Timestamp.now() + Timedelta(minutes=30), 0) - ds.segments.append(seg0) - - flt.datasets.append(ds) - prj.add_child(flt) - - prj_ctrl = AirborneProjectController(prj) - fc0 = prj_ctrl.get_child(flt.uid) - dsc: DataSetController = fc0.get_child(ds.uid) - assert 1 == dsc._segments.rowCount() - - assert isinstance(dsc, DataSetController) - assert fc0 == dsc.get_parent() - assert grav_file == dsc.get_datafile(grav_file.group).datamodel - assert traj_file == dsc.get_datafile(traj_file.group).datamodel - - grav1_file = DataFile(DataType.GRAVITY, datetime.now(), Path(tmpdir).joinpath('gravity2.dat')) - dsc.add_datafile(grav1_file) - assert grav1_file == dsc.get_datafile(grav1_file.group).datamodel - - traj1_file = DataFile(DataType.TRAJECTORY, datetime.now(), Path(tmpdir).joinpath('traj2.txt')) - dsc.add_datafile(traj1_file) - assert traj1_file == dsc.get_datafile(traj1_file.group).datamodel - - invl_file = DataFile('marine', datetime.now(), Path(tmpdir)) - with pytest.raises(TypeError): - dsc.add_datafile(invl_file) - - with pytest.raises(KeyError): - dsc.get_datafile('marine') - - # Test Data Segment Features - _seg_oid = OID(tag="seg1") - _seg1_start = Timestamp.now() - _seg1_stop = Timestamp.now() + Timedelta(hours=1) - seg1_ctrl = dsc.add_segment(_seg_oid, _seg1_start, _seg1_stop, label="seg1") - seg1: DataSegment = seg1_ctrl.datamodel - assert _seg1_start == seg1.start - assert _seg1_stop == seg1.stop - assert "seg1" == seg1.label - - assert seg1_ctrl == dsc.get_segment(_seg_oid) - assert isinstance(seg1_ctrl, DataSegmentController) - assert "seg1" == seg1_ctrl.get_attr('label') - assert _seg_oid == seg1_ctrl.uid - - assert 2 == len(ds.segments) - assert ds.segments[1] == seg1_ctrl.datamodel - assert ds.segments[1] == seg1_ctrl.data(Qt.UserRole) - - # Segment updates - _new_start = Timestamp.now() + Timedelta(hours=2) - _new_stop = Timestamp.now() + Timedelta(hours=3) - dsc.update_segment(seg1.uid, _new_start, _new_stop) - assert _new_start == seg1.start - assert _new_stop == seg1.stop - assert "seg1" == seg1.label - - dsc.update_segment(seg1.uid, label="seg1label") - assert "seg1label" == seg1.label - - invalid_uid = OID() - assert dsc.get_segment(invalid_uid) is None - with pytest.raises(KeyError): - dsc.remove_segment(invalid_uid) - with pytest.raises(KeyError): - dsc.update_segment(invalid_uid, label="RaiseError") - - assert 2 == len(ds.segments) - dsc.remove_segment(seg1.uid) - assert 1 == len(ds.segments) - assert 1 == dsc._segments.rowCount() - - -def test_dataset_datafiles(project: AirborneProject): - prj_ctrl = AirborneProjectController(project) - flt_ctrl = prj_ctrl.get_child(project.flights[0].uid) - ds_ctrl = flt_ctrl.get_child(flt_ctrl.datamodel.datasets[0].uid) - - grav_file = ds_ctrl.datamodel.gravity - grav_file_ctrl = ds_ctrl.get_datafile(DataType.GRAVITY) - gps_file = ds_ctrl.datamodel.trajectory - gps_file_ctrl = ds_ctrl.get_datafile(DataType.TRAJECTORY) - - assert grav_file.uid == grav_file_ctrl.uid - assert ds_ctrl == grav_file_ctrl.dataset - assert grav_file.group == grav_file_ctrl.group - - assert gps_file.uid == gps_file_ctrl.uid - assert ds_ctrl == gps_file_ctrl.dataset - assert gps_file.group == gps_file_ctrl.group - - -def test_dataset_reparenting(project: AirborneProject): - # Test reassignment of DataSet to another Flight - # Note: FlightController automatically adds empty DataSet if Flight has None - prj_ctrl = AirborneProjectController(project) - flt1ctrl = prj_ctrl.get_child(project.flights[0].uid) - flt2ctrl = prj_ctrl.get_child(project.flights[1].uid) - dsctrl = flt1ctrl.get_child(flt1ctrl.datamodel.datasets[0].uid) - assert isinstance(dsctrl, DataSetController) - - assert 1 == len(flt1ctrl.datamodel.datasets) - assert 1 == flt1ctrl.rowCount() - - assert 1 == len(flt2ctrl.datamodel.datasets) - assert 1 == flt2ctrl.rowCount() - - assert flt1ctrl == dsctrl.get_parent() - - dsctrl.set_parent(flt2ctrl) - assert 2 == flt2ctrl.rowCount() - assert 0 == flt1ctrl.rowCount() - assert flt2ctrl == dsctrl.get_parent() - - # DataSetController is recreated when added to new flight. - assert not dsctrl == flt2ctrl.get_child(dsctrl.uid) - assert flt1ctrl.get_child(dsctrl.uid) is None - - -def test_dataset_data_api(project: AirborneProject, hdf5file, gravdata, gpsdata): - prj_ctrl = AirborneProjectController(project) - flt_ctrl = prj_ctrl.get_child(project.flights[0].uid) - - gravfile = DataFile(DataType.GRAVITY, datetime.now(), - Path('tests/sample_gravity.csv')) - gpsfile = DataFile(DataType.TRAJECTORY, datetime.now(), - Path('tests/sample_trajectory.txt'), column_format='hms') - - dataset = DataSet(gravfile, gpsfile) - - HDF5Manager.save_data(gravdata, gravfile, hdf5file) - HDF5Manager.save_data(gpsdata, gpsfile, hdf5file) - - dataset_ctrl = DataSetController(dataset, flt_ctrl) - - gravity_frame = HDF5Manager.load_data(gravfile, hdf5file) - assert gravity_frame.equals(dataset_ctrl.gravity) - - trajectory_frame = HDF5Manager.load_data(gpsfile, hdf5file) - assert trajectory_frame.equals(dataset_ctrl.trajectory) - - assert dataset_ctrl.dataframe() is not None - expected: DataFrame = pd.concat([gravdata, gpsdata], axis=1, sort=True) - expected_cols = [col for col in expected] - - assert expected.equals(dataset_ctrl.dataframe()) - assert set(expected_cols) == set(dataset_ctrl.columns) - - series_model = dataset_ctrl.series_model - assert isinstance(series_model, QStandardItemModel) - assert len(expected_cols) == series_model.rowCount() - - for i in range(series_model.rowCount()): - item: QStandardItem = series_model.item(i, 0) - col = item.data(Qt.DisplayRole) - series = item.data(Qt.UserRole) - - assert expected[col].equals(series) - - def test_parent_child_activations(project: AirborneProject): """Test child/parent interaction of DataSet Controller with FlightController @@ -420,20 +228,3 @@ def test_parent_child_activations(project: AirborneProject): prj_ctrl.set_active(True) assert StateColor.ACTIVE.value == prj_ctrl.background().color().name() - flt_ctrl.set_active(True) - - # Test exclusive/non-exclusive child activation - assert flt_ctrl is prj_ctrl.active_child - prj_ctrl.activate_child(flt2_ctrl.uid, exclusive=False) - assert flt_ctrl.is_active - assert flt2_ctrl.is_active - - prj_ctrl.activate_child(flt2_ctrl.uid, exclusive=True) - assert flt2_ctrl.is_active - assert not flt_ctrl.is_active - - - - - - diff --git a/tests/test_dataset_controller.py b/tests/test_dataset_controller.py new file mode 100644 index 0000000..3d8b4bb --- /dev/null +++ b/tests/test_dataset_controller.py @@ -0,0 +1,191 @@ +# -*- coding: utf-8 -*- +from datetime import datetime +from pathlib import Path + +import pytest +import pandas as pd +from PyQt5.QtCore import Qt +from PyQt5.QtGui import QStandardItemModel, QStandardItem +from pandas import Timestamp, Timedelta, DataFrame + +from dgp.core.hdf5_manager import HDF5Manager +from dgp.core import OID, DataType +from dgp.core.models.datafile import DataFile +from dgp.core.models.dataset import DataSet, DataSegment +from dgp.core.models.flight import Flight +from dgp.core.models.project import AirborneProject +from dgp.core.controllers.project_controllers import AirborneProjectController +from dgp.core.controllers.dataset_controller import DataSetController, DataSegmentController + + +def test_dataset_controller(tmpdir): + """Test DataSet controls + Load data from HDF5 Store + Behavior when incomplete (no grav or traj) + """ + hdf = Path(tmpdir).joinpath('test.hdf5') + prj = AirborneProject(name="TestPrj", path=Path(tmpdir)) + flt = Flight("TestFlt") + grav_file = DataFile(DataType.GRAVITY, datetime.now(), Path(tmpdir).joinpath('gravity.dat')) + traj_file = DataFile(DataType.TRAJECTORY, datetime.now(), Path(tmpdir).joinpath('trajectory.txt')) + ds = DataSet(grav_file, traj_file) + seg0 = DataSegment(OID(), Timestamp.now(), Timestamp.now() + Timedelta(minutes=30), 0) + ds.segments.append(seg0) + + flt.datasets.append(ds) + prj.add_child(flt) + + prj_ctrl = AirborneProjectController(prj) + fc0 = prj_ctrl.get_child(flt.uid) + dsc: DataSetController = fc0.get_child(ds.uid) + assert 1 == dsc._segments.rowCount() + + assert isinstance(dsc, DataSetController) + assert fc0 == dsc.get_parent() + assert grav_file == dsc.get_datafile(grav_file.group).datamodel + assert traj_file == dsc.get_datafile(traj_file.group).datamodel + + grav1_file = DataFile(DataType.GRAVITY, datetime.now(), Path(tmpdir).joinpath('gravity2.dat')) + dsc.add_datafile(grav1_file) + assert grav1_file == dsc.get_datafile(grav1_file.group).datamodel + + traj1_file = DataFile(DataType.TRAJECTORY, datetime.now(), Path(tmpdir).joinpath('traj2.txt')) + dsc.add_datafile(traj1_file) + assert traj1_file == dsc.get_datafile(traj1_file.group).datamodel + + invl_file = DataFile('marine', datetime.now(), Path(tmpdir)) + with pytest.raises(TypeError): + dsc.add_datafile(invl_file) + + with pytest.raises(KeyError): + dsc.get_datafile('marine') + + # Test Data Segment Features + _seg_oid = OID(tag="seg1") + _seg1_start = Timestamp.now() + _seg1_stop = Timestamp.now() + Timedelta(hours=1) + seg1_ctrl = dsc.add_segment(_seg_oid, _seg1_start, _seg1_stop, label="seg1") + seg1: DataSegment = seg1_ctrl.datamodel + assert _seg1_start == seg1.start + assert _seg1_stop == seg1.stop + assert "seg1" == seg1.label + + assert seg1_ctrl == dsc.get_segment(_seg_oid) + assert isinstance(seg1_ctrl, DataSegmentController) + assert "seg1" == seg1_ctrl.get_attr('label') + assert _seg_oid == seg1_ctrl.uid + + assert 2 == len(ds.segments) + assert ds.segments[1] == seg1_ctrl.datamodel + assert ds.segments[1] == seg1_ctrl.data(Qt.UserRole) + + # Segment updates + _new_start = Timestamp.now() + Timedelta(hours=2) + _new_stop = Timestamp.now() + Timedelta(hours=3) + dsc.update_segment(seg1.uid, _new_start, _new_stop) + assert _new_start == seg1.start + assert _new_stop == seg1.stop + assert "seg1" == seg1.label + + dsc.update_segment(seg1.uid, label="seg1label") + assert "seg1label" == seg1.label + + invalid_uid = OID() + assert dsc.get_segment(invalid_uid) is None + with pytest.raises(KeyError): + dsc.remove_segment(invalid_uid) + with pytest.raises(KeyError): + dsc.update_segment(invalid_uid, label="RaiseError") + + assert 2 == len(ds.segments) + dsc.remove_segment(seg1.uid) + assert 1 == len(ds.segments) + assert 1 == dsc._segments.rowCount() + + +def test_dataset_datafiles(project: AirborneProject): + prj_ctrl = AirborneProjectController(project) + flt_ctrl = prj_ctrl.get_child(project.flights[0].uid) + ds_ctrl = flt_ctrl.get_child(flt_ctrl.datamodel.datasets[0].uid) + + grav_file = ds_ctrl.datamodel.gravity + grav_file_ctrl = ds_ctrl.get_datafile(DataType.GRAVITY) + gps_file = ds_ctrl.datamodel.trajectory + gps_file_ctrl = ds_ctrl.get_datafile(DataType.TRAJECTORY) + + assert grav_file.uid == grav_file_ctrl.uid + assert ds_ctrl == grav_file_ctrl.dataset + assert grav_file.group == grav_file_ctrl.group + + assert gps_file.uid == gps_file_ctrl.uid + assert ds_ctrl == gps_file_ctrl.dataset + assert gps_file.group == gps_file_ctrl.group + + +# def test_dataset_reparenting(project: AirborneProject): +# # Test reassignment of DataSet to another Flight +# # Note: FlightController automatically adds empty DataSet if Flight has None +# prj_ctrl = AirborneProjectController(project) +# flt1ctrl = prj_ctrl.get_child(project.flights[0].uid) +# flt2ctrl = prj_ctrl.get_child(project.flights[1].uid) +# dsctrl = flt1ctrl.get_child(flt1ctrl.datamodel.datasets[0].uid) +# assert isinstance(dsctrl, DataSetController) +# +# assert 1 == len(flt1ctrl.datamodel.datasets) +# assert 1 == flt1ctrl.rowCount() +# +# assert 1 == len(flt2ctrl.datamodel.datasets) +# assert 1 == flt2ctrl.rowCount() +# +# assert flt1ctrl == dsctrl.get_parent() +# +# dsctrl.set_parent(flt2ctrl) +# assert 2 == flt2ctrl.rowCount() +# assert 0 == flt1ctrl.rowCount() +# assert flt2ctrl == dsctrl.get_parent() +# +# # DataSetController is recreated when added to new flight. +# assert not dsctrl == flt2ctrl.get_child(dsctrl.uid) +# assert flt1ctrl.get_child(dsctrl.uid) is None + + +def test_dataset_data_api(project: AirborneProject, hdf5file, gravdata, gpsdata): + prj_ctrl = AirborneProjectController(project) + flt_ctrl = prj_ctrl.get_child(project.flights[0].uid) + + gravfile = DataFile(DataType.GRAVITY, datetime.now(), + Path('tests/sample_gravity.csv')) + gpsfile = DataFile(DataType.TRAJECTORY, datetime.now(), + Path('tests/sample_trajectory.txt'), column_format='hms') + + dataset = DataSet(gravfile, gpsfile) + + HDF5Manager.save_data(gravdata, gravfile, hdf5file) + HDF5Manager.save_data(gpsdata, gpsfile, hdf5file) + + dataset_ctrl = DataSetController(dataset, flt_ctrl) + + gravity_frame = HDF5Manager.load_data(gravfile, hdf5file) + assert gravity_frame.equals(dataset_ctrl.gravity) + + trajectory_frame = HDF5Manager.load_data(gpsfile, hdf5file) + assert trajectory_frame.equals(dataset_ctrl.trajectory) + + assert dataset_ctrl.dataframe() is not None + expected: DataFrame = pd.concat([gravdata, gpsdata], axis=1, sort=True) + expected_cols = [col for col in expected] + + assert expected.equals(dataset_ctrl.dataframe()) + assert set(expected_cols) == set(dataset_ctrl.columns) + + series_model = dataset_ctrl.series_model + assert isinstance(series_model, QStandardItemModel) + assert len(expected_cols) == series_model.rowCount() + + for i in range(series_model.rowCount()): + item: QStandardItem = series_model.item(i, 0) + col = item.data(Qt.DisplayRole) + series = item.data(Qt.UserRole) + + assert expected[col].equals(series) + From 60ed2ea927eca034e0f8e92950592f2b4e97456e Mon Sep 17 00:00:00 2001 From: Zachery Brady Date: Tue, 21 Aug 2018 09:43:01 -0600 Subject: [PATCH 222/236] Refactor controller interfaces, add reference tracking. Refactor/rename IBaseController -> AbstractController. Add concrete methods to AbstractController to handle reference tracking, updates, deletes. Simplify the Interface hierarchy and delete IParent/IChild/DGPObject Functionality of above is rolled into AbstractController as these features are essentially consistent across all UI controllers. --- dgp/core/controllers/controller_interfaces.py | 179 +++++++----------- dgp/core/controllers/datafile_controller.py | 4 +- dgp/core/controllers/dataset_controller.py | 51 +++-- dgp/core/controllers/flight_controller.py | 24 ++- dgp/core/controllers/project_treemodel.py | 10 +- dgp/gui/main.py | 4 +- dgp/gui/views/project_tree_view.py | 9 +- dgp/gui/workspaces/__init__.py | 4 +- docs/source/core/controllers.rst | 4 +- tests/test_controllers.py | 7 +- tests/test_project_treemodel.py | 13 -- 11 files changed, 120 insertions(+), 189 deletions(-) diff --git a/dgp/core/controllers/controller_interfaces.py b/dgp/core/controllers/controller_interfaces.py index c524612..5ed5695 100644 --- a/dgp/core/controllers/controller_interfaces.py +++ b/dgp/core/controllers/controller_interfaces.py @@ -1,4 +1,5 @@ # -*- coding: utf-8 -*- +import weakref from pathlib import Path from typing import Union, Generator, List, Tuple, Any @@ -21,94 +22,90 @@ """ MenuBinding = Tuple[str, Tuple[Any, ...]] -MaybeChild = Union['IChild', None] +MaybeChild = Union['AbstractController', None] -class DGPObject: +class AbstractController(QStandardItem, AttributeProxy): + def __init__(self, *args, parent=None, **kwargs): + super().__init__(*args, **kwargs) + self._parent: AbstractController = parent + self._referrers = weakref.WeakSet() + self._update_refs = weakref.WeakKeyDictionary() + self._delete_refs = weakref.WeakKeyDictionary() + @property def uid(self) -> OID: - """Returns the unique Object IDentifier of the object + raise NotImplementedError - Returns - ------- - :class:`~dgp.core.oid.OID` - Unique Object Identifier of the object. + def get_parent(self) -> 'AbstractController': + return self._parent - """ - raise NotImplementedError + def set_parent(self, parent: 'AbstractController'): + self._parent = parent + def take_reference(self, owner, on_delete=None, on_update=None) -> weakref.ReferenceType: + """take_reference returns a weak reference to this controller -class IChild(DGPObject): - """A class sub-classing IChild can be a child object of a class which is an - :class:`IParent`. + on_delete and on_update parameters allow caller to be notified when the + object has been deleted or updated - The IChild interface defines properties to determine if the child can be - activated, and if it is currently activated. - Methods are defined so that the child may retrieve or set a reference to its - parent object. - The set_active method is provided for the Parent object to notify the child - of an activation state change and to update its visual state. + Parameters + ---------- + owner : object + on_delete : method + on_update : method - """ - def get_parent(self) -> 'IParent': - """Return the parent object of this child""" - raise NotImplementedError + Returns + ------- + weakref.ReferenceType - def set_parent(self, parent) -> None: - """Set the parent object of this child""" - raise NotImplementedError + """ + if on_delete is not None: + self._delete_refs[owner] = on_delete + if on_update is not None: + self._update_refs[owner] = on_update + self._referrers.add(owner) - @property - def can_activate(self) -> bool: - """Return whether this child can be activated""" - return False + return weakref.ref(self) @property def is_active(self) -> bool: - if not self.can_activate: - return False - raise NotImplementedError - - def set_active(self, state: bool) -> None: - """Called to visually set the child to the active state. - - If a child needs to activate itself it should call activate_child on its - parent object, this ensures that siblings can be deactivated if the - child should be exclusively active. - - Parameters - ---------- - state : bool - Set the objects active state to the boolean state + return len(self._referrers) > 0 + def delete(self): + """Call this when deleting a controller to allow it to clean up any open + references (widgets) """ - if not self.can_activate: - return - raise NotImplementedError + for destruct in self._delete_refs.values(): + destruct() + def update(self): + for ref in self._update_refs.values(): + ref() -# TODO: Rename to AbstractParent -class IParent(DGPObject): - """A class sub-classing IParent provides the ability to add/get/remove - :class:`IChild` objects, as well as a method to iterate through children. + @property + def parent_widget(self) -> Union[QWidget, None]: + try: + return self.model().parent() + except AttributeError: + return None - Child objects may be activated by the parent if child.can_activate is True. - Parent objects should call set_active on children to update their internal - active state, and to allow children to perform any necessary visual updates. + @property + def menu(self) -> List[MenuBinding]: + raise NotImplementedError - """ @property - def children(self) -> Generator[IChild, None, None]: + def children(self) -> Generator['AbstractController', None, None]: """Return a generator of IChild objects specific to the parent. Returns ------- - Generator[IChild, None, None] + Generator[AbstractController, None, None] """ raise NotImplementedError - def add_child(self, child) -> 'IChild': + def add_child(self, child) -> 'AbstractController': """Add a child object to the controller, and its underlying data object. @@ -119,7 +116,7 @@ def add_child(self, child) -> 'IChild': Returns ------- - :class:`IBaseController` + :class:`AbstractController` A reference to the controller object wrapping the added child Raises @@ -127,9 +124,13 @@ def add_child(self, child) -> 'IChild': :exc:`TypeError` If the child is not an allowed type for the controller. """ + if self.children is None: + raise TypeError(f"{self.__class__} does not support children") raise NotImplementedError def remove_child(self, child, confirm: bool = True) -> bool: + if self.children is None: + return False raise NotImplementedError def get_child(self, uid: Union[str, OID]) -> MaybeChild: @@ -151,52 +152,12 @@ def get_child(self, uid: Union[str, OID]) -> MaybeChild: if uid == child.uid: return child - def activate_child(self, uid: OID, exclusive: bool = True, - emit: bool = False) -> MaybeChild: - """Activate a child referenced by the given OID, and return a reference - to the activated child. - Children may be exclusively activated (default behavior), in which case - all other children of the parent will be set to inactive. - - Parameters - ---------- - uid : :class:`~dgp.core.oid.OID` - exclusive : bool, Optional - If exclusive is True, all other children will be deactivated - emit : bool, Optional - - Returns - ------- - :class:`IChild` - The child object that was activated - - """ - child = self.get_child(uid) - try: - child.set_active(True) - if exclusive: - for other in [c for c in self.children if c.uid != uid]: - other.set_active(False) - except AttributeError: - return None - else: - return child - - -class IBaseController(QStandardItem, AttributeProxy, DGPObject): @property - def parent_widget(self) -> Union[QWidget, None]: - try: - return self.model().parent() - except AttributeError: - return None - - @property - def menu(self) -> List[MenuBinding]: + def datamodel(self) -> object: raise NotImplementedError -class IAirborneController(IBaseController, IParent, IChild): +class IAirborneController(AbstractController): def add_flight_dlg(self): raise NotImplementedError @@ -229,30 +190,20 @@ def can_activate(self): return True -class IFlightController(IBaseController, IParent, IChild): +class IFlightController(AbstractController): @property def can_activate(self): return True - @property - def project(self) -> IAirborneController: - raise NotImplementedError - def get_parent(self) -> IAirborneController: raise NotImplementedError -class IMeterController(IBaseController, IChild): +class IMeterController(AbstractController): pass -class IDataSetController(IBaseController, IChild): - def get_parent(self) -> IFlightController: - raise NotImplementedError - - def set_parent(self, parent) -> None: - raise NotImplementedError - +class IDataSetController(AbstractController): @property def hdfpath(self) -> Path: raise NotImplementedError diff --git a/dgp/core/controllers/datafile_controller.py b/dgp/core/controllers/datafile_controller.py index 816768c..48bc720 100644 --- a/dgp/core/controllers/datafile_controller.py +++ b/dgp/core/controllers/datafile_controller.py @@ -7,12 +7,12 @@ from dgp.core.hdf5_manager import HDF5Manager from dgp.core.oid import OID from dgp.core.types.enumerations import Icon -from dgp.core.controllers.controller_interfaces import IDataSetController, IBaseController +from dgp.core.controllers.controller_interfaces import IDataSetController, AbstractController from dgp.core.controllers.controller_helpers import show_in_explorer from dgp.core.models.datafile import DataFile -class DataFileController(IBaseController): +class DataFileController(AbstractController): def __init__(self, datafile: DataFile, dataset=None): super().__init__() self._datafile = datafile diff --git a/dgp/core/controllers/dataset_controller.py b/dgp/core/controllers/dataset_controller.py index cb5b399..1b6ea96 100644 --- a/dgp/core/controllers/dataset_controller.py +++ b/dgp/core/controllers/dataset_controller.py @@ -14,18 +14,16 @@ from dgp.core.models.datafile import DataFile from dgp.core.models.dataset import DataSet, DataSegment from dgp.core.types.enumerations import DataType, StateColor -from dgp.gui.plotting.helpers import LinearSegmentGroup from dgp.lib.etc import align_frames from . import controller_helpers from .gravimeter_controller import GravimeterController -from .controller_interfaces import (IFlightController, IDataSetController, - IBaseController, IAirborneController) +from .controller_interfaces import IFlightController, IDataSetController, AbstractController from .project_containers import ProjectFolder from .datafile_controller import DataFileController -class DataSegmentController(IBaseController): +class DataSegmentController(AbstractController): """Controller for :class:`DataSegment` Implements reference tracking feature allowing the mutation of segments @@ -36,7 +34,6 @@ def __init__(self, segment: DataSegment, parent: IDataSetController = None, super().__init__() self._segment = segment self._parent = parent - self._refs: Set[LinearSegmentGroup] = weakref.WeakSet() self._clone = clone self.setData(segment, Qt.UserRole) self.update() @@ -57,10 +54,8 @@ def datamodel(self) -> DataSegment: def menu(self): return self._menu - def add_ref(self, ref): - self._refs.add(ref) - def update(self): + super().update() self.setText(str(self._segment)) self.setToolTip(repr(self._segment)) @@ -72,8 +67,7 @@ def delete(self): from its parent DataSet/Controller """ - for ref in self._refs: - ref.delete() + super().delete() try: self._parent.remove_segment(self.uid) except KeyError: @@ -84,8 +78,8 @@ class DataSetController(IDataSetController): def __init__(self, dataset: DataSet, flight: IFlightController): super().__init__() self._dataset = dataset - self._flight: IFlightController = flight - self._active = False + self._flight = weakref.ref(flight) + # self._project = self._flight().project self.log = logging.getLogger(__name__) self.setEditable(False) @@ -120,8 +114,8 @@ def __init__(self, dataset: DataSet, flight: IFlightController): self._channel_model = QStandardItemModel() self._menu_bindings = [ # pragma: no cover - ('addAction', ('Set Name', self._set_name)), - ('addAction', ('Set Active', lambda: self.get_parent().activate_child(self.uid))), + ('addAction', ('Open', lambda: self.model().item_activated(self.index()))), + ('addAction', ('Set Name', self._action_set_name)), ('addAction', (Icon.METER.icon(), 'Set Sensor', self._action_set_sensor_dlg)), ('addSeparator', ()), @@ -131,20 +125,26 @@ def __init__(self, dataset: DataSet, flight: IFlightController): lambda: self.project.load_file_dlg(DataType.TRAJECTORY, dataset=self))), ('addAction', ('Align Data', self.align)), ('addSeparator', ()), - ('addAction', ('Delete', lambda: self.get_parent().remove_child(self.uid))), + ('addAction', ('Delete', self._action_delete)), ('addAction', ('Properties', lambda: None)) ] + self._clones: Set[DataSetController] = weakref.WeakSet() + + @property + def children(self): + return None + def clone(self): - return DataSetController(self._dataset, self._flight) + return DataSetController(self._dataset, self.get_parent()) @property - def uid(self) -> OID: - return self._dataset.uid + def project(self): + return self.get_parent().get_parent() @property - def project(self) -> IAirborneController: - return self._flight.get_parent() + def uid(self) -> OID: + return self._dataset.uid @property def is_active(self): @@ -152,7 +152,7 @@ def is_active(self): @property def hdfpath(self) -> Path: - return self._flight.get_parent().hdfpath + return self.get_parent().get_parent().hdfpath @property def menu(self): # pragma: no cover @@ -235,12 +235,7 @@ def align(self): self.log.info(f'DataFrame aligned.') def get_parent(self) -> IFlightController: - return self._flight - - def set_parent(self, parent: IFlightController) -> None: - self._flight.remove_child(self.uid, confirm=False) - self._flight = parent - self._flight.add_child(self.datamodel) + return self._flight() def add_datafile(self, datafile: DataFile) -> None: if datafile.group is DataType.GRAVITY: @@ -305,7 +300,7 @@ def update(self): super().update() # Context Menu Handlers - def _set_name(self): + def _action_set_name(self): name = controller_helpers.get_input("Set DataSet Name", "Enter a new name:", self.get_attr('name'), parent=self.parent_widget) diff --git a/dgp/core/controllers/flight_controller.py b/dgp/core/controllers/flight_controller.py index 2b7d22a..2367465 100644 --- a/dgp/core/controllers/flight_controller.py +++ b/dgp/core/controllers/flight_controller.py @@ -31,7 +31,7 @@ class FlightController(IFlightController): The default display behavior is to provide the Flights Name. A :obj:`QIcon` or string path to a resource can be provided for decoration. - FlightController implements the AttributeProxy mixin (via IBaseController), + FlightController implements the AttributeProxy mixin (via AbstractController), which allows access to the underlying :class:`Flight` attributes via the get_attr and set_attr methods. @@ -44,14 +44,12 @@ class FlightController(IFlightController): """ - inherit_context = True - def __init__(self, flight: Flight, project: IAirborneController): """Assemble the view/controller repr from the base flight object.""" super().__init__() self.log = logging.getLogger(__name__) self._flight = flight - self._parent = project + self._parent = weakref.ref(project) self._active: bool = False self.setData(flight, Qt.UserRole) self.setIcon(Icon.AIRBORNE.icon()) @@ -73,8 +71,7 @@ def __init__(self, flight: Flight, project: IAirborneController): # TODO: Consider adding MenuPrototype class which could provide the means to build QMenu self._bindings = [ # pragma: no cover ('addAction', ('Add Dataset', self._add_dataset)), - ('addAction', ('Set Active', - lambda: self._activate_self())), + ('addAction', ('Open Flight Tab', lambda: self.model().item_activated(self.index()))), ('addAction', ('Import Gravity', lambda: self._load_file_dialog(DataType.GRAVITY))), ('addAction', ('Import Trajectory', @@ -93,7 +90,7 @@ def uid(self) -> OID: return self._flight.uid @property - def children(self): + def children(self) -> Generator[DataSetController, None, None]: for i in range(self.rowCount()): yield self.child(i, 0) @@ -109,15 +106,11 @@ def datamodel(self) -> Flight: def datasets(self) -> QStandardItemModel: return self._dataset_model - @property - def project(self) -> IAirborneController: - return self._parent - def get_parent(self) -> IAirborneController: - return self._parent + return self._parent() def set_parent(self, parent: IAirborneController) -> None: - self._parent = parent + self._parent = weakref.ref(parent) def update(self): self.setText(self._flight.name) @@ -131,6 +124,11 @@ def clone(self): self._clones.add(clone) return clone + def delete(self): + super().delete() + for child in self.children: + child.delete() + def add_child(self, child: DataSet) -> DataSetController: """Adds a child to the underlying Flight, and to the model representation for the appropriate child type. diff --git a/dgp/core/controllers/project_treemodel.py b/dgp/core/controllers/project_treemodel.py index 736c411..5a4ffdb 100644 --- a/dgp/core/controllers/project_treemodel.py +++ b/dgp/core/controllers/project_treemodel.py @@ -8,7 +8,7 @@ from dgp.core import OID, DataType from dgp.core.controllers.controller_interfaces import (IFlightController, IAirborneController, - IBaseController) + IDataSetController, AbstractController) from dgp.core.controllers.controller_helpers import confirm_action from dgp.gui.utils import ProgressEvent @@ -50,6 +50,7 @@ class ProjectTreeModel(QStandardItemModel): tabOpenRequested = pyqtSignal(object, object) tabCloseRequested = pyqtSignal(OID) progressNotificationRequested = pyqtSignal(ProgressEvent) + sigDataChanged = pyqtSignal(object) def __init__(self, project: IAirborneController = None, parent: Optional[QObject] = None): @@ -103,8 +104,8 @@ def remove_project(self, child: IAirborneController, confirm: bool = True) -> No self.removeRow(child.row()) self.projectClosed.emit(child.uid) - def close_flight(self, flight: IFlightController): - self.tabCloseRequested.emit(flight.uid) + def notify_tab_changed(self, flight: IFlightController): + flight.get_parent().activate_child(flight.uid) def item_selected(self, index: QModelIndex): """Single-click handler for View events""" @@ -112,8 +113,9 @@ def item_selected(self, index: QModelIndex): def item_activated(self, index: QModelIndex): """Double-click handler for View events""" + item = self.itemFromIndex(index) - if not isinstance(item, IBaseController): + if not isinstance(item, AbstractController): return if isinstance(item, IAirborneController): diff --git a/dgp/gui/main.py b/dgp/gui/main.py index 6755352..5c509cb 100644 --- a/dgp/gui/main.py +++ b/dgp/gui/main.py @@ -10,8 +10,8 @@ from dgp import __about__ from dgp.core.oid import OID +from dgp.core.controllers.controller_interfaces import AbstractController from dgp.core.types.enumerations import Links, Icon -from dgp.core.controllers.controller_interfaces import IBaseController from dgp.core.controllers.project_controllers import AirborneProjectController from dgp.core.controllers.project_treemodel import ProjectTreeModel from dgp.core.models.project import AirborneProject, GravityProject @@ -260,7 +260,7 @@ def _update_recent_menu(self): for ref in recents: self.recent_menu.addAction(ref.name, lambda: self.open_project(Path(ref.path))) - def _tab_open_requested(self, uid: OID, controller: IBaseController): + def _tab_open_requested(self, uid: OID, controller: AbstractController): """pyqtSlot(OID, IBaseController, str) Parameters diff --git a/dgp/gui/views/project_tree_view.py b/dgp/gui/views/project_tree_view.py index 3a82ad7..b1b65d9 100644 --- a/dgp/gui/views/project_tree_view.py +++ b/dgp/gui/views/project_tree_view.py @@ -7,8 +7,7 @@ from PyQt5.QtWidgets import QTreeView, QMenu from dgp.core.controllers.controller_interfaces import (IAirborneController, - IChild, - IBaseController, + AbstractController, MenuBinding) from dgp.core.controllers.project_treemodel import ProjectTreeModel @@ -68,7 +67,7 @@ def _on_click(self, index: QModelIndex): def _on_double_click(self, index: QModelIndex): """Selectively expand/collapse an item depending on its active state""" item = self.model().itemFromIndex(index) - if isinstance(item, IChild): + if isinstance(item, AbstractController): if item.is_active: self.setExpanded(index, not self.isExpanded(index)) else: @@ -86,12 +85,12 @@ def _build_menu(self, menu: QMenu, bindings: List[MenuBinding]): def contextMenuEvent(self, event: QContextMenuEvent, *args, **kwargs): index = self.indexAt(event.pos()) - item: IBaseController = self.model().itemFromIndex(index) + item: AbstractController = self.model().itemFromIndex(index) expanded = self.isExpanded(index) menu = QMenu(self) # bindings = getattr(item, 'menu_bindings', [])[:] # type: List - if isinstance(item, IBaseController): + if isinstance(item, AbstractController): bindings = item.menu[:] else: bindings = [] diff --git a/dgp/gui/workspaces/__init__.py b/dgp/gui/workspaces/__init__.py index eba49b9..ac20436 100644 --- a/dgp/gui/workspaces/__init__.py +++ b/dgp/gui/workspaces/__init__.py @@ -1,6 +1,6 @@ # -*- coding: utf-8 -*- -from dgp.core.controllers.controller_interfaces import IBaseController +from dgp.core.controllers.controller_interfaces import AbstractController from .project import ProjectTab, AirborneProjectController from .flight import FlightTab, FlightController from .dataset import DataSetTab, DataSetController @@ -15,6 +15,6 @@ } -def tab_factory(controller: IBaseController): +def tab_factory(controller: AbstractController): """Return the workspace tab constructor for the given controller type""" return _tabmap.get(controller.__class__, None) diff --git a/docs/source/core/controllers.rst b/docs/source/core/controllers.rst index 710e9e6..31c3ced 100644 --- a/docs/source/core/controllers.rst +++ b/docs/source/core/controllers.rst @@ -26,7 +26,7 @@ Controllers typically should match 1:1 a model class, though there are cases for creating utility controllers such as the :class:`ProjectFolder` which is a utility class for grouping items visually in the project's tree view. -Controllers should at minimum subclass :class:`IBaseController` which configures +Controllers should at minimum subclass :class:`AbstractController` which configures inheritance for :class:`QStandardItem` and :class:`AttributeProxy`. For more complex and widely used controllers, a dedicated interface should be created following the same naming scheme - particularly where circular dependencies @@ -85,7 +85,7 @@ type hinting within the development environment in such cases. .. py:module:: dgp.core.controllers.controller_interfaces -.. autoclass:: IBaseController +.. autoclass:: AbstractController :show-inheritance: :undoc-members: diff --git a/tests/test_controllers.py b/tests/test_controllers.py index 931f3cc..43fada6 100644 --- a/tests/test_controllers.py +++ b/tests/test_controllers.py @@ -16,7 +16,7 @@ from dgp.core.controllers.project_controllers import AirborneProjectController from dgp.core.models.project import AirborneProject from dgp.core.controllers.controller_mixins import AttributeProxy -from dgp.core.controllers.controller_interfaces import IChild, IMeterController, IParent +from dgp.core.controllers.controller_interfaces import IMeterController, AbstractController from dgp.core.controllers.gravimeter_controller import GravimeterController from dgp.core.controllers.dataset_controller import (DataSetController, DataSegmentController) @@ -54,10 +54,9 @@ def test_gravimeter_controller(tmpdir): meter = Gravimeter('AT1A-Test') meter_ctrl = GravimeterController(meter) - assert isinstance(meter_ctrl, IChild) + assert isinstance(meter_ctrl, AbstractController) assert isinstance(meter_ctrl, IMeterController) assert isinstance(meter_ctrl, AttributeProxy) - assert not isinstance(meter_ctrl, IParent) assert meter == meter_ctrl.data(Qt.UserRole) @@ -110,7 +109,7 @@ def test_flight_controller(project: AirborneProject): with pytest.raises(TypeError): fc.add_child({1: "invalid child"}) - fc.set_parent(None) + # fc.set_parent(None) with pytest.raises(KeyError): fc.remove_child("Not a real child", confirm=False) diff --git a/tests/test_project_treemodel.py b/tests/test_project_treemodel.py index 1d8e341..8267446 100644 --- a/tests/test_project_treemodel.py +++ b/tests/test_project_treemodel.py @@ -34,16 +34,3 @@ def test_ProjectTreeModel_multiple_projects(project: AirborneProject, assert prj_ctrl in model.projects assert prj_ctrl2 in model.projects - -def test_ProjectTreeModel_item_activated(prj_ctrl: AirborneProjectController, - flt_ctrl: FlightController): - model = ProjectTreeModel(prj_ctrl) - assert prj_ctrl is model.active_project - tabOpen_spy = QSignalSpy(model.tabOpenRequested) - - fc1_index = model.index(flt_ctrl.row(), 0, - parent=model.index(prj_ctrl.flights.row(), 0, - parent=model.index(prj_ctrl.row(), 0))) - assert not flt_ctrl.is_active - model.item_activated(fc1_index) - assert 1 == len(tabOpen_spy) From f5eca062a19c7daf40153164e77e0f268a907650 Mon Sep 17 00:00:00 2001 From: Zachery Brady Date: Tue, 28 Aug 2018 14:29:31 -0600 Subject: [PATCH 223/236] Implement improved observer pattern/registration. Improved the observer registration method to enable passing of bound methods, and observation of specific state actions (update/delete) This allows UI objects (tabs/widgets etc) to explicitly register and subscribe to controller events - e.g. when a controller object is deleted, it will execute a callback notifying all observers of its destruction. Added clone tracking feature to AbstractController to standardize the update of clones, and integrate the state notifications with those of the observers. --- dgp/core/controllers/controller_interfaces.py | 115 +++++++++++------- dgp/core/controllers/dataset_controller.py | 21 ++-- dgp/core/controllers/flight_controller.py | 4 +- dgp/core/controllers/gravimeter_controller.py | 4 + dgp/core/controllers/project_controllers.py | 4 + dgp/gui/workspaces/base.py | 11 ++ dgp/gui/workspaces/dataset.py | 13 +- dgp/gui/workspaces/flight.py | 11 +- 8 files changed, 107 insertions(+), 76 deletions(-) diff --git a/dgp/core/controllers/controller_interfaces.py b/dgp/core/controllers/controller_interfaces.py index 5ed5695..b9f1945 100644 --- a/dgp/core/controllers/controller_interfaces.py +++ b/dgp/core/controllers/controller_interfaces.py @@ -2,6 +2,7 @@ import weakref from pathlib import Path from typing import Union, Generator, List, Tuple, Any +from weakref import WeakKeyDictionary, WeakSet, WeakMethod, ref from PyQt5.QtGui import QStandardItem, QStandardItemModel from PyQt5.QtWidgets import QWidget @@ -29,9 +30,10 @@ class AbstractController(QStandardItem, AttributeProxy): def __init__(self, *args, parent=None, **kwargs): super().__init__(*args, **kwargs) self._parent: AbstractController = parent - self._referrers = weakref.WeakSet() - self._update_refs = weakref.WeakKeyDictionary() - self._delete_refs = weakref.WeakKeyDictionary() + self._clones: Set[AbstractController] = WeakSet() + self.__cloned = False + self._observers: Dict[StateAction, Dict] = {state: WeakKeyDictionary() + for state in StateAction} @property def uid(self) -> OID: @@ -43,45 +45,39 @@ def get_parent(self) -> 'AbstractController': def set_parent(self, parent: 'AbstractController'): self._parent = parent - def take_reference(self, owner, on_delete=None, on_update=None) -> weakref.ReferenceType: - """take_reference returns a weak reference to this controller + @property + def clones(self): + """Yields any active (referenced) clones of this controller""" + for clone in self._clones: + yield clone - on_delete and on_update parameters allow caller to be notified when the - object has been deleted or updated + def clone(self): + """Return a clone of this controller for use in other UI models - Parameters - ---------- - owner : object - on_delete : method - on_update : method + Must be overridden by subclasses, subclasses should call register_clone + on the cloned instance to ensure update events are propagated to the + clone. + """ + raise NotImplementedError - Returns - ------- - weakref.ReferenceType + @property + def is_clone(self) -> bool: + return self.__cloned - """ - if on_delete is not None: - self._delete_refs[owner] = on_delete - if on_update is not None: - self._update_refs[owner] = on_update - self._referrers.add(owner) + @is_clone.setter + def is_clone(self, value: bool): + self.__cloned = value - return weakref.ref(self) + def register_clone(self, clone: 'AbstractController'): + clone.is_clone = True + self._clones.add(clone) @property def is_active(self) -> bool: - return len(self._referrers) > 0 + """Return True if there are any active observers of this controller""" + return len(self._observers[StateAction.DELETE]) > 0 - def delete(self): - """Call this when deleting a controller to allow it to clean up any open - references (widgets) - """ - for destruct in self._delete_refs.values(): - destruct() - def update(self): - for ref in self._update_refs.values(): - ref() @property def parent_widget(self) -> Union[QWidget, None]: @@ -93,6 +89,49 @@ def parent_widget(self) -> Union[QWidget, None]: @property def menu(self) -> List[MenuBinding]: raise NotImplementedError + def register_observer(self, observer, callback, state: StateAction) -> None: + """Register an observer with this controller + + Observers will be notified when the controller undergoes the applicable + StateAction (UPDATE/DELETE), via the supplied callback method. + + Parameters + ---------- + observer : object + The observer object, note must be weak reference'able, when the + observer is deleted or gc'd any callbacks will be dropped. + callback : bound method + Bound method to call when the state action occurs. + Note this must be a *bound* method of an object, builtin functions + or PyQt signals will raise an error. + state : StateAction + Action to observe in the controller, currently only meaningful for + UPDATE or DELETE + + """ + self._observers[state][observer] = WeakMethod(callback) + + def delete(self) -> None: + """Notify any observers and clones that this controller is being deleted + + Also calls delete() on any children of this controller to cleanup after + the parent has been deleted. + """ + for child in self.children: + child.delete() + for cb in self._observers[StateAction.DELETE].values(): + cb()() + for clone in self.clones: + clone.delete() + + def update(self) -> None: + """Notify any observers and clones that the controller state has updated + + """ + for cb in self._observers[StateAction.UPDATE].values(): + cb()() + for clone in self.clones: + clone.update() @property def children(self) -> Generator['AbstractController', None, None]: @@ -185,16 +224,8 @@ def flight_model(self) -> QStandardItemModel: def meter_model(self) -> QStandardItemModel: raise NotImplementedError - @property - def can_activate(self): - return True - class IFlightController(AbstractController): - @property - def can_activate(self): - return True - def get_parent(self) -> IAirborneController: raise NotImplementedError @@ -208,10 +239,6 @@ class IDataSetController(AbstractController): def hdfpath(self) -> Path: raise NotImplementedError - @property - def can_activate(self): - return True - def add_datafile(self, datafile) -> None: """ Add a :obj:`DataFile` to the :obj:`DataSetController`, potentially diff --git a/dgp/core/controllers/dataset_controller.py b/dgp/core/controllers/dataset_controller.py index 1b6ea96..672679d 100644 --- a/dgp/core/controllers/dataset_controller.py +++ b/dgp/core/controllers/dataset_controller.py @@ -39,7 +39,7 @@ def __init__(self, segment: DataSegment, parent: IDataSetController = None, self.update() self._menu = [ - ('addAction', ('Delete', self.delete)) + ('addAction', ('Delete', self._action_delete)), ] @property @@ -60,18 +60,13 @@ def update(self): self.setToolTip(repr(self._segment)) def clone(self) -> 'DataSegmentController': - return DataSegmentController(self._segment, clone=True) + clone = DataSegmentController(self.entity) + self.register_clone(clone) + return clone - def delete(self): - """Delete this data segment from any active plots (via weak ref), and - from its parent DataSet/Controller + def _action_delete(self): + self.get_parent().remove_child(self.uid, confirm=True) - """ - super().delete() - try: - self._parent.remove_segment(self.uid) - except KeyError: - pass class DataSetController(IDataSetController): @@ -136,7 +131,9 @@ def children(self): return None def clone(self): - return DataSetController(self._dataset, self.get_parent()) + clone = DataSetController(self.entity, self.get_parent(), self.project) + self.register_clone(clone) + return clone @property def project(self): diff --git a/dgp/core/controllers/flight_controller.py b/dgp/core/controllers/flight_controller.py index 2367465..2b5cac5 100644 --- a/dgp/core/controllers/flight_controller.py +++ b/dgp/core/controllers/flight_controller.py @@ -120,8 +120,8 @@ def update(self): super().update() def clone(self): - clone = FlightController(self._flight, project=self.get_parent()) - self._clones.add(clone) + clone = FlightController(self.entity, project=self.get_parent()) + self.register_clone(clone) return clone def delete(self): diff --git a/dgp/core/controllers/gravimeter_controller.py b/dgp/core/controllers/gravimeter_controller.py index 09c1abe..f963684 100644 --- a/dgp/core/controllers/gravimeter_controller.py +++ b/dgp/core/controllers/gravimeter_controller.py @@ -42,6 +42,10 @@ def get_parent(self) -> IAirborneController: def set_parent(self, parent: IAirborneController) -> None: self._parent = parent + def clone(self): + clone = GravimeterController(self.entity, self.get_parent()) + self.register_clone(clone) + return clone def update(self): self.setData(self._meter.name, Qt.DisplayRole) diff --git a/dgp/core/controllers/project_controllers.py b/dgp/core/controllers/project_controllers.py index c571895..36529e2 100644 --- a/dgp/core/controllers/project_controllers.py +++ b/dgp/core/controllers/project_controllers.py @@ -109,6 +109,9 @@ def writeable(self, key: str): # pragma: no cover return self._fields[key][0] return True + def clone(self): + raise NotImplementedError + @property def children(self) -> Generator[IFlightController, None, None]: for child in itertools.chain(self.flights.items(), self.meters.items()): @@ -226,6 +229,7 @@ def update(self): # pragma: no cover self.get_parent().project_mutated(self) except AttributeError: self.log.warning(f"project {self.get_attr('name')} has no parent") + super().update() def _post_load(self, datafile: DataFile, dataset: IDataSetController, data: DataFrame) -> None: # pragma: no cover diff --git a/dgp/gui/workspaces/base.py b/dgp/gui/workspaces/base.py index 8b0f8d1..d81ef5e 100644 --- a/dgp/gui/workspaces/base.py +++ b/dgp/gui/workspaces/base.py @@ -1,5 +1,6 @@ # -*- coding: utf-8 -*- import json +import weakref from PyQt5.QtCore import pyqtSignal from PyQt5.QtGui import QCloseEvent @@ -12,9 +13,19 @@ class WorkspaceTab(QWidget): + def __init__(self, controller: AbstractController, *args, **kwargs): + super().__init__(*args, **kwargs) + self.setAttribute(Qt.WA_DeleteOnClose, True) + controller.register_observer(self, self.close, StateAction.DELETE) + controller.register_observer(self, self._slot_update, StateAction.UPDATE) + self._controller = weakref.ref(controller) + @property def uid(self) -> OID: raise NotImplementedError + @property + def controller(self) -> AbstractController: + return self._controller() @property def title(self) -> str: diff --git a/dgp/gui/workspaces/dataset.py b/dgp/gui/workspaces/dataset.py index d7ff9bd..fa1f43e 100644 --- a/dgp/gui/workspaces/dataset.py +++ b/dgp/gui/workspaces/dataset.py @@ -130,9 +130,7 @@ class DataSetTab(WorkspaceTab): """Root workspace tab for DataSet controller manipulation""" def __init__(self, dataset: DataSetController, parent=None): - super().__init__(parent=parent, flags=Qt.Widget) - self.dataset = dataset - + super().__init__(controller=dataset, parent=parent, flags=Qt.Widget) self.ws_settings: dict = self.get_state() layout = QtWidgets.QVBoxLayout(self) @@ -151,12 +149,8 @@ def __init__(self, dataset: DataSetController, parent=None): @property def title(self): - return f'{self.dataset.get_attr("name")} ' \ - f'[{self.dataset.parent().get_attr("name")}]' - - @property - def uid(self): - return self.dataset.uid + return f'{self.controller.get_attr("name")} ' \ + f'[{self.controller.parent().get_attr("name")}]' def _tab_loaded(self, tab: SubTab): """Restore tab state after initial loading is complete""" @@ -171,4 +165,3 @@ def save_state(self, state=None): state[tab.__class__.__name__] = tab.get_state() super().save_state(state=state) - diff --git a/dgp/gui/workspaces/flight.py b/dgp/gui/workspaces/flight.py index 7425bfb..4108afd 100644 --- a/dgp/gui/workspaces/flight.py +++ b/dgp/gui/workspaces/flight.py @@ -15,18 +15,13 @@ def __init__(self, flight, parent=None): class FlightTab(WorkspaceTab): def __init__(self, flight: FlightController, parent=None): - super().__init__(parent=parent, flags=Qt.Widget) - self.flight = flight + super().__init__(flight, parent=parent, flags=Qt.Widget) layout = QtWidgets.QHBoxLayout(self) self.workspace = QtWidgets.QTabWidget() - self.workspace.addTab(FlightMapTab(self.flight), "Flight Map") + self.workspace.addTab(FlightMapTab(flight), "Flight Map") layout.addWidget(self.workspace) @property def title(self): - return f'{self.flight.get_attr("name")}' - - @property - def uid(self): - return self.flight.uid + return f'{self.controller.get_attr("name")}' From 104e64a571465a57d3ffaabdc9ba1cdbcf27698a Mon Sep 17 00:00:00 2001 From: Zachery Brady Date: Tue, 28 Aug 2018 14:46:42 -0600 Subject: [PATCH 224/236] Refactor controller, dedupe common constructor calls Rename 'datamodel' property to 'entity' (AttributeProxy) Implement uid property in AbstractController Set common QStandardItem attributes in AbstractController Add project attribute to AbstractController as weakref Refactor/cleanup imports in controllers --- dgp/core/controllers/controller_interfaces.py | 46 +++++++--- dgp/core/controllers/controller_mixins.py | 14 +-- dgp/core/controllers/datafile_controller.py | 42 +++++---- dgp/core/controllers/dataset_controller.py | 90 +++++++------------ dgp/core/controllers/flight_controller.py | 66 ++++---------- dgp/core/controllers/gravimeter_controller.py | 35 ++------ dgp/core/controllers/project_controllers.py | 58 +++++------- dgp/core/controllers/project_treemodel.py | 3 +- 8 files changed, 145 insertions(+), 209 deletions(-) diff --git a/dgp/core/controllers/controller_interfaces.py b/dgp/core/controllers/controller_interfaces.py index b9f1945..d939b6e 100644 --- a/dgp/core/controllers/controller_interfaces.py +++ b/dgp/core/controllers/controller_interfaces.py @@ -1,16 +1,15 @@ # -*- coding: utf-8 -*- -import weakref from pathlib import Path -from typing import Union, Generator, List, Tuple, Any +from typing import Union, Generator, List, Tuple, Any, Set, Dict from weakref import WeakKeyDictionary, WeakSet, WeakMethod, ref +from PyQt5.QtCore import Qt from PyQt5.QtGui import QStandardItem, QStandardItemModel from PyQt5.QtWidgets import QWidget -from dgp.core.controllers.controller_mixins import AttributeProxy from dgp.core.oid import OID -from dgp.core.types.enumerations import DataType - +from dgp.core.controllers.controller_mixins import AttributeProxy +from dgp.core.types.enumerations import DataType, StateAction """ Interface module, while not exactly Pythonic, helps greatly by providing @@ -27,23 +26,33 @@ class AbstractController(QStandardItem, AttributeProxy): - def __init__(self, *args, parent=None, **kwargs): + def __init__(self, model, *args, project=None, parent=None, **kwargs): super().__init__(*args, **kwargs) + self._model = model + self._project = ref(project) if project is not None else None self._parent: AbstractController = parent self._clones: Set[AbstractController] = WeakSet() self.__cloned = False self._observers: Dict[StateAction, Dict] = {state: WeakKeyDictionary() for state in StateAction} + self.setEditable(False) + self.setText(model.name if hasattr(model, "name") else str(model)) + self.setData(model, Qt.UserRole) + @property def uid(self) -> OID: - raise NotImplementedError + """Return the unique Object IDentifier for the controllers' model""" + return self._model.uid - def get_parent(self) -> 'AbstractController': - return self._parent + @property + def entity(self): + """Returns the underlying core/model object of this controller""" + return self._model - def set_parent(self, parent: 'AbstractController'): - self._parent = parent + @property + def project(self) -> 'IAirborneController': + return self._project() if self._project is not None else None @property def clones(self): @@ -77,7 +86,13 @@ def is_active(self) -> bool: """Return True if there are any active observers of this controller""" return len(self._observers[StateAction.DELETE]) > 0 + @property + def menu(self) -> List[MenuBinding]: + """Return a list of MenuBinding's to construct a context menu + Must be overridden by subclasses + """ + raise NotImplementedError @property def parent_widget(self) -> Union[QWidget, None]: @@ -86,9 +101,12 @@ def parent_widget(self) -> Union[QWidget, None]: except AttributeError: return None - @property - def menu(self) -> List[MenuBinding]: - raise NotImplementedError + def get_parent(self) -> 'AbstractController': + return self._parent + + def set_parent(self, parent: 'AbstractController'): + self._parent = parent + def register_observer(self, observer, callback, state: StateAction) -> None: """Register an observer with this controller diff --git a/dgp/core/controllers/controller_mixins.py b/dgp/core/controllers/controller_mixins.py index 5e62b1b..0c3d669 100644 --- a/dgp/core/controllers/controller_mixins.py +++ b/dgp/core/controllers/controller_mixins.py @@ -13,7 +13,7 @@ class AttributeProxy: """ @property - def datamodel(self) -> object: + def entity(self) -> object: """Return the underlying model of the proxy class.""" raise NotImplementedError @@ -24,14 +24,14 @@ def update(self): pass def get_attr(self, key: str) -> Any: - if hasattr(self.datamodel, key): - return getattr(self.datamodel, key) + if hasattr(self.entity, key): + return getattr(self.entity, key) else: - raise AttributeError("Object {!r} has no attribute {}".format(self.datamodel, key)) + raise AttributeError("Object {!r} has no attribute {}".format(self.entity, key)) def set_attr(self, key: str, value: Any): - if not hasattr(self.datamodel, key): - raise AttributeError("Object {!r} has no attribute {}".format(self.datamodel, key)) + if not hasattr(self.entity, key): + raise AttributeError("Object {!r} has no attribute {}".format(self.entity, key)) if not self.writeable(key): raise AttributeError("Attribute [{}] is not writeable".format(key)) @@ -41,7 +41,7 @@ def set_attr(self, key: str, value: Any): if not valid == QValidator.Acceptable: raise ValueError("Value does not pass validation") - setattr(self.datamodel, key, value) + setattr(self.entity, key, value) self.update() def writeable(self, key: str) -> bool: diff --git a/dgp/core/controllers/datafile_controller.py b/dgp/core/controllers/datafile_controller.py index 48bc720..12460e0 100644 --- a/dgp/core/controllers/datafile_controller.py +++ b/dgp/core/controllers/datafile_controller.py @@ -1,5 +1,7 @@ # -*- coding: utf-8 -*- import logging +from typing import cast, Generator + from PyQt5.QtCore import Qt from PyQt5.QtGui import QIcon @@ -13,10 +15,9 @@ class DataFileController(AbstractController): - def __init__(self, datafile: DataFile, dataset=None): - super().__init__() - self._datafile = datafile - self._dataset: IDataSetController = dataset + + def __init__(self, datafile: DataFile, parent: IDataSetController = None): + super().__init__(model=datafile, parent=parent) self.log = logging.getLogger(__name__) self.set_datafile(datafile) @@ -26,17 +27,18 @@ def __init__(self, datafile: DataFile, dataset=None): ('addAction', (Icon.OPEN_FOLDER.icon(), 'Show in Explorer', self._launch_explorer)) ] + self.update() @property def uid(self) -> OID: try: - return self._datafile.uid + return super().uid except AttributeError: return None @property - def dataset(self) -> IDataSetController: - return self._dataset + def entity(self) -> DataFile: + return cast(DataFile, super().entity) @property def menu(self): # pragma: no cover @@ -44,14 +46,18 @@ def menu(self): # pragma: no cover @property def group(self): - return self._datafile.group + return self.entity.group - @property - def datamodel(self) -> object: - return self._datafile + def clone(self): + raise NotImplementedError + + def update(self): + super().update() + if self.entity is not None: + self.setText(self.entity.name) def set_datafile(self, datafile: DataFile): - self._datafile = datafile + self._model = datafile if datafile is None: self.setText("No Data") self.setToolTip("No Data") @@ -60,18 +66,18 @@ def set_datafile(self, datafile: DataFile): self.setText(datafile.label) self.setToolTip("Source path: {!s}".format(datafile.source_path)) self.setData(datafile, role=Qt.UserRole) - if self._datafile.group is DataType.GRAVITY: + if self.entity.group is DataType.GRAVITY: self.setIcon(Icon.GRAVITY.icon()) - elif self._datafile.group is DataType.TRAJECTORY: + elif self.entity.group is DataType.TRAJECTORY: self.setIcon(Icon.TRAJECTORY.icon()) def _properties_dlg(self): - if self._datafile is None: + if self.entity is None: return # TODO: Launch dialog to show datafile properties (name, path, data etc) - data = HDF5Manager.load_data(self._datafile, self.dataset.hdfpath) + data = HDF5Manager.load_data(self.entity, self.get_parent().hdfpath) self.log.info(f'\n{data.describe()}') def _launch_explorer(self): - if self._datafile is not None: - show_in_explorer(self._datafile.source_path.parent) + if self.entity is not None: + show_in_explorer(self.entity.source_path.parent) diff --git a/dgp/core/controllers/dataset_controller.py b/dgp/core/controllers/dataset_controller.py index 672679d..e2d5d5d 100644 --- a/dgp/core/controllers/dataset_controller.py +++ b/dgp/core/controllers/dataset_controller.py @@ -2,19 +2,20 @@ import logging import weakref from pathlib import Path -from typing import List, Union, Generator, Set +from typing import List, Union, Set, cast from PyQt5.QtWidgets import QInputDialog from pandas import DataFrame, Timestamp, concat from PyQt5.QtCore import Qt -from PyQt5.QtGui import QColor, QBrush, QStandardItemModel, QStandardItem +from PyQt5.QtGui import QStandardItemModel, QStandardItem from dgp.core import OID, Icon from dgp.core.hdf5_manager import HDF5Manager from dgp.core.models.datafile import DataFile from dgp.core.models.dataset import DataSet, DataSegment -from dgp.core.types.enumerations import DataType, StateColor +from dgp.core.types.enumerations import DataType, StateAction from dgp.lib.etc import align_frames +from dgp.gui.plotting.helpers import LineUpdate from . import controller_helpers from .gravimeter_controller import GravimeterController @@ -22,6 +23,8 @@ from .project_containers import ProjectFolder from .datafile_controller import DataFileController +_log = logging.getLogger(__name__) + class DataSegmentController(AbstractController): """Controller for :class:`DataSegment` @@ -29,13 +32,8 @@ class DataSegmentController(AbstractController): Implements reference tracking feature allowing the mutation of segments representations displayed on a plot surface. """ - def __init__(self, segment: DataSegment, parent: IDataSetController = None, - clone=False): - super().__init__() - self._segment = segment - self._parent = parent - self._clone = clone - self.setData(segment, Qt.UserRole) + def __init__(self, segment: DataSegment, parent: IDataSetController = None): + super().__init__(model=segment, parent=parent) self.update() self._menu = [ @@ -43,22 +41,13 @@ def __init__(self, segment: DataSegment, parent: IDataSetController = None, ] @property - def uid(self) -> OID: - return self._segment.uid - - @property - def datamodel(self) -> DataSegment: - return self._segment + def entity(self) -> DataSegment: + return cast(DataSegment, super().entity) @property def menu(self): return self._menu - def update(self): - super().update() - self.setText(str(self._segment)) - self.setToolTip(repr(self._segment)) - def clone(self) -> 'DataSegmentController': clone = DataSegmentController(self.entity) self.register_clone(clone) @@ -67,22 +56,21 @@ def clone(self) -> 'DataSegmentController': def _action_delete(self): self.get_parent().remove_child(self.uid, confirm=True) + def update(self): + super().update() + self.setText(str(self.entity)) + self.setToolTip(repr(self.entity)) + class DataSetController(IDataSetController): - def __init__(self, dataset: DataSet, flight: IFlightController): - super().__init__() - self._dataset = dataset - self._flight = weakref.ref(flight) - # self._project = self._flight().project - self.log = logging.getLogger(__name__) - - self.setEditable(False) - self.setText(self._dataset.name) + def __init__(self, dataset: DataSet, flight: IFlightController, + project=None): + super().__init__(model=dataset, project=project, parent=flight) + self.setIcon(Icon.PLOT_LINE.icon()) - self.setBackground(QBrush(QColor(StateColor.INACTIVE.value))) - self._grav_file = DataFileController(self._dataset.gravity, self) - self._traj_file = DataFileController(self._dataset.trajectory, self) + self._grav_file = DataFileController(self.entity.gravity, self) + self._traj_file = DataFileController(self.entity.trajectory, self) self._child_map = {DataType.GRAVITY: self._grav_file, DataType.TRAJECTORY: self._traj_file} @@ -136,28 +124,16 @@ def clone(self): return clone @property - def project(self): - return self.get_parent().get_parent() - - @property - def uid(self) -> OID: - return self._dataset.uid - - @property - def is_active(self): - return False - - @property - def hdfpath(self) -> Path: - return self.get_parent().get_parent().hdfpath + def entity(self) -> DataSet: + return cast(DataSet, super().entity) @property def menu(self): # pragma: no cover return self._menu_bindings @property - def datamodel(self) -> DataSet: - return self._dataset + def hdfpath(self) -> Path: + return self.project.hdfpath @property def series_model(self) -> QStandardItemModel: @@ -190,12 +166,12 @@ def _update_channel_model(self): def gravity(self) -> Union[DataFrame]: if not self._gravity.empty: return self._gravity - if self._dataset.gravity is None: + if self.entity.gravity is None: return self._gravity try: - self._gravity = HDF5Manager.load_data(self._dataset.gravity, self.hdfpath) + self._gravity = HDF5Manager.load_data(self.entity.gravity, self.hdfpath) except Exception: - self.log.exception(f'Exception loading gravity from HDF') + _log.exception(f'Exception loading gravity from HDF') finally: return self._gravity @@ -203,12 +179,12 @@ def gravity(self) -> Union[DataFrame]: def trajectory(self) -> Union[DataFrame, None]: if not self._trajectory.empty: return self._trajectory - if self._dataset.trajectory is None: + if self.entity.trajectory is None: return self._trajectory try: - self._trajectory = HDF5Manager.load_data(self._dataset.trajectory, self.hdfpath) + self._trajectory = HDF5Manager.load_data(self.entity.trajectory, self.hdfpath) except Exception: - self.log.exception(f'Exception loading trajectory data from HDF') + _log.exception(f'Exception loading trajectory data from HDF') finally: return self._trajectory @@ -219,7 +195,7 @@ def dataframe(self) -> DataFrame: def align(self): if self.gravity.empty or self.trajectory.empty: - self.log.info(f'Gravity or Trajectory is empty, cannot align.') + _log.info(f'Gravity or Trajectory is empty, cannot align.') return from dgp.lib.gravity_ingestor import DGS_AT1A_INTERP_FIELDS from dgp.lib.trajectory_ingestor import TRAJECTORY_INTERP_FIELDS @@ -293,7 +269,7 @@ def remove_segment(self, uid: OID): self._dataset.segments.remove(segment.datamodel) def update(self): - self.setText(self._dataset.name) + self.setText(self.entity.name) super().update() # Context Menu Handlers diff --git a/dgp/core/controllers/flight_controller.py b/dgp/core/controllers/flight_controller.py index 2b5cac5..8405726 100644 --- a/dgp/core/controllers/flight_controller.py +++ b/dgp/core/controllers/flight_controller.py @@ -1,10 +1,8 @@ # -*- coding: utf-8 -*- import logging -import weakref -from typing import Union, Generator +from typing import Union, Generator, cast -from PyQt5.QtCore import Qt -from PyQt5.QtGui import QStandardItemModel, QColor +from PyQt5.QtGui import QStandardItemModel from . import controller_helpers as helpers from dgp.core.oid import OID @@ -12,7 +10,7 @@ from dgp.core.controllers.controller_interfaces import IAirborneController, IFlightController from dgp.core.models.dataset import DataSet from dgp.core.models.flight import Flight -from dgp.core.types.enumerations import DataType, StateColor, Icon +from dgp.core.types.enumerations import DataType, Icon from dgp.gui.dialogs.add_flight_dialog import AddFlightDialog @@ -46,26 +44,19 @@ class FlightController(IFlightController): def __init__(self, flight: Flight, project: IAirborneController): """Assemble the view/controller repr from the base flight object.""" - super().__init__() + super().__init__(model=flight, project=project, parent=project) self.log = logging.getLogger(__name__) - self._flight = flight - self._parent = weakref.ref(project) - self._active: bool = False - self.setData(flight, Qt.UserRole) self.setIcon(Icon.AIRBORNE.icon()) - self.setEditable(False) - self.setBackground(QColor(StateColor.INACTIVE.value)) - self._clones = weakref.WeakSet() self._dataset_model = QStandardItemModel() - for dataset in self._flight.datasets: - control = DataSetController(dataset, self) + for dataset in self.entity.datasets: + control = DataSetController(dataset, self, project) self.appendRow(control) self._dataset_model.appendRow(control.clone()) - # Add default DataSet if none defined - if not len(self._flight.datasets): + # Add a default DataSet if none defined + if not len(self.entity.datasets): self.add_child(DataSet(name='DataSet-0')) # TODO: Consider adding MenuPrototype class which could provide the means to build QMenu @@ -77,7 +68,7 @@ def __init__(self, flight: Flight, project: IAirborneController): ('addAction', ('Import Trajectory', lambda: self._load_file_dialog(DataType.TRAJECTORY))), ('addSeparator', ()), - ('addAction', (f'Delete {self._flight.name}', + ('addAction', (f'Delete {self.entity.name}', lambda: self._delete_self(confirm=True))), ('addAction', ('Rename Flight', lambda: self._set_name())), ('addAction', ('Properties', @@ -86,8 +77,8 @@ def __init__(self, flight: Flight, project: IAirborneController): self.update() @property - def uid(self) -> OID: - return self._flight.uid + def entity(self) -> Flight: + return cast(Flight, super().entity) @property def children(self) -> Generator[DataSetController, None, None]: @@ -98,25 +89,13 @@ def children(self) -> Generator[DataSetController, None, None]: def menu(self): # pragma: no cover return self._bindings - @property - def datamodel(self) -> Flight: - return self._flight - @property def datasets(self) -> QStandardItemModel: return self._dataset_model - def get_parent(self) -> IAirborneController: - return self._parent() - - def set_parent(self, parent: IAirborneController) -> None: - self._parent = weakref.ref(parent) - def update(self): - self.setText(self._flight.name) - self.setToolTip(str(self._flight.uid)) - for clone in self._clones: - clone.update() + self.setText(self.entity.name) + self.setToolTip(str(self.entity.uid)) super().update() def clone(self): @@ -124,11 +103,6 @@ def clone(self): self.register_clone(clone) return clone - def delete(self): - super().delete() - for child in self.children: - child.delete() - def add_child(self, child: DataSet) -> DataSetController: """Adds a child to the underlying Flight, and to the model representation for the appropriate child type. @@ -153,14 +127,14 @@ def add_child(self, child: DataSet) -> DataSetController: raise TypeError(f'Invalid child of type {type(child)} supplied to' f'FlightController, must be {type(DataSet)}') - self._flight.datasets.append(child) - control = DataSetController(child, self) + self.entity.datasets.append(child) + control = DataSetController(child, self, project=self.project) self.appendRow(control) self._dataset_model.appendRow(control.clone()) self.update() return control - def remove_child(self, uid: Union[OID, str], confirm: bool = True) -> bool: + def remove_child(self, uid: OID, confirm: bool = True) -> bool: """ Remove the specified child primitive from the underlying :obj:`~dgp.core.models.flight.Flight` and from the respective model @@ -195,7 +169,7 @@ def remove_child(self, uid: Union[OID, str], confirm: bool = True) -> bool: return False child.delete() - self._flight.datasets.remove(child.datamodel) + self.entity.datasets.remove(child.entity) self._dataset_model.removeRow(child.row()) self.removeRow(child.row()) self.update() @@ -227,9 +201,3 @@ def _load_file_dialog(self, datatype: DataType): # pragma: no cover def _show_properties_dlg(self): # pragma: no cover AddFlightDialog.from_existing(self, self.get_parent(), parent=self.parent_widget).exec_() - - def __hash__(self): - return hash(self._flight.uid) - - def __str__(self): - return str(self._flight) diff --git a/dgp/core/controllers/gravimeter_controller.py b/dgp/core/controllers/gravimeter_controller.py index f963684..81b33b3 100644 --- a/dgp/core/controllers/gravimeter_controller.py +++ b/dgp/core/controllers/gravimeter_controller.py @@ -1,8 +1,7 @@ # -*- coding: utf-8 -*- -from PyQt5.QtCore import Qt +from typing import cast from dgp.core import Icon -from dgp.core.oid import OID from dgp.core.controllers.controller_interfaces import IAirborneController, IMeterController from dgp.core.controllers.controller_helpers import get_input from dgp.core.models.meter import Gravimeter @@ -11,53 +10,35 @@ class GravimeterController(IMeterController): def __init__(self, meter: Gravimeter, parent: IAirborneController = None): - super().__init__(meter.name) - self.setEditable(False) - self.setData(meter, role=Qt.UserRole) + super().__init__(model=meter, parent=parent) self.setIcon(Icon.METER.icon()) - self._meter = meter # type: Gravimeter - self._parent = parent - self._bindings = [ - ('addAction', ('Delete <%s>' % self._meter.name, + ('addAction', ('Delete <%s>' % self.entity.name, (lambda: self.get_parent().remove_child(self.uid, True)))), ('addAction', ('Rename', self.set_name_dlg)) ] @property - def uid(self) -> OID: - return self._meter.uid - - @property - def datamodel(self) -> object: - return self._meter + def entity(self) -> Gravimeter: + return cast(Gravimeter, super().entity) @property def menu(self): return self._bindings - def get_parent(self) -> IAirborneController: - return self._parent - - def set_parent(self, parent: IAirborneController) -> None: - self._parent = parent def clone(self): clone = GravimeterController(self.entity, self.get_parent()) self.register_clone(clone) return clone def update(self): - self.setData(self._meter.name, Qt.DisplayRole) + self.setText(self.entity.name) + super().update() def set_name_dlg(self): # pragma: no cover - name = get_input("Set Name", "Enter a new name:", self._meter.name, + name = get_input("Set Name", "Enter a new name:", self.entity.name, self.parent_widget) if name: self.set_attr('name', name) - def clone(self): - return GravimeterController(self._meter, self.get_parent()) - - def __hash__(self): - return hash(self._meter.uid) diff --git a/dgp/core/controllers/project_controllers.py b/dgp/core/controllers/project_controllers.py index 36529e2..a6063ea 100644 --- a/dgp/core/controllers/project_controllers.py +++ b/dgp/core/controllers/project_controllers.py @@ -2,7 +2,6 @@ import functools import itertools import logging -import weakref from pathlib import Path from typing import Union, List, Generator, cast @@ -46,19 +45,15 @@ class AirborneProjectController(IAirborneController): """ def __init__(self, project: AirborneProject, path: Path = None): - super().__init__(project.name) + super().__init__(model=project) self.log = logging.getLogger(__name__) - self._project = project if path: - self._project.path = path + self.entity.path = path - self._parent = None self._active = None self.setIcon(Icon.DGP_NOTEXT.icon()) - self.setToolTip(str(self._project.path.resolve())) - self.setData(project, Qt.UserRole) - self.setBackground(QColor(StateColor.INACTIVE.value)) + self.setToolTip(str(self.entity.path.resolve())) self.flights = ProjectFolder("Flights") self.appendRow(self.flights) @@ -70,11 +65,11 @@ def __init__(self, project: AirborneProject, path: Path = None): # It is important that GravimeterControllers are defined before Flights # Flights may create references to a Gravimeter object, but not vice versa - for meter in self.project.gravimeters: + for meter in self.entity.gravimeters: controller = GravimeterController(meter, parent=self) self.meters.appendRow(controller) - for flight in self.project.flights: + for flight in self.entity.flights: controller = FlightController(flight, project=self) self.flights.appendRow(controller) @@ -98,7 +93,6 @@ def __init__(self, project: AirborneProject, path: Path = None): 'modify_date': (False, None) } - def validator(self, key: str): # pragma: no cover if key in self._fields: return self._fields[key][1] @@ -109,6 +103,14 @@ def writeable(self, key: str): # pragma: no cover return self._fields[key][0] return True + @property + def entity(self) -> AirborneProject: + return cast(AirborneProject, super().entity) + + @property + def menu(self): # pragma: no cover + return self._bindings + def clone(self): raise NotImplementedError @@ -122,29 +124,13 @@ def fields(self) -> List[str]: """Return list of public attribute keys (for UI display)""" return list(self._fields.keys()) - @property - def uid(self) -> OID: - return self._project.uid - - @property - def datamodel(self) -> object: - return self._project - - @property - def project(self) -> Union[GravityProject, AirborneProject]: - return self._project - @property def path(self) -> Path: - return self._project.path - - @property - def menu(self): # pragma: no cover - return self._bindings + return self.entity.path @property def hdfpath(self) -> Path: - return self._project.path.joinpath("dgpdata.hdf5") + return self.entity.path.joinpath("dgpdata.hdf5") @property def meter_model(self) -> QStandardItemModel: @@ -163,11 +149,11 @@ def add_child(self, child: Union[Flight, Gravimeter]) -> Union[FlightController, self.meters.appendRow(controller) else: raise ValueError("{0!r} is not a valid child type for {1.__name__}".format(child, self.__class__)) - self.project.add_child(child) + self.entity.add_child(child) self.update() return controller - def remove_child(self, uid: Union[OID, str], confirm: bool = True): + def remove_child(self, uid: OID, confirm: bool = True): child = self.get_child(uid) if child is None: self.log.warning(f'UID {uid!s} has no corresponding object in this ' @@ -181,8 +167,8 @@ def remove_child(self, uid: Union[OID, str], confirm: bool = True): return child.delete() - self.project.remove_child(child.uid) - self._child_map[child.datamodel.__class__].removeRow(child.row()) + self.entity.remove_child(child.uid) + self._child_map[child.entity.__class__].removeRow(child.row()) self.update() def get_parent(self) -> ProjectTreeModel: @@ -204,11 +190,11 @@ def is_active(self): return self._active def save(self, to_file=True): - return self.project.to_json(indent=2, to_file=to_file) + return self.entity.to_json(indent=2, to_file=to_file) def set_name(self): # pragma: no cover new_name = get_input("Set Project Name", "Enter a Project Name", - self.project.name, parent=self.parent_widget) + self.entity.name, parent=self.parent_widget) if new_name: self.set_attr('name', new_name) @@ -224,7 +210,7 @@ def add_gravimeter_dlg(self): # pragma: no cover def update(self): # pragma: no cover """Emit an update event from the parent Model, signalling that data has been added/removed/modified in the project.""" - self.setText(self._project.name) + self.setText(self.entity.name) try: self.get_parent().project_mutated(self) except AttributeError: diff --git a/dgp/core/controllers/project_treemodel.py b/dgp/core/controllers/project_treemodel.py index 5a4ffdb..be35952 100644 --- a/dgp/core/controllers/project_treemodel.py +++ b/dgp/core/controllers/project_treemodel.py @@ -8,7 +8,8 @@ from dgp.core import OID, DataType from dgp.core.controllers.controller_interfaces import (IFlightController, IAirborneController, - IDataSetController, AbstractController) + IDataSetController, + AbstractController) from dgp.core.controllers.controller_helpers import confirm_action from dgp.gui.utils import ProgressEvent From f8b3cf4d471514232a35d0f90e32a6b23168ce91 Mon Sep 17 00:00:00 2001 From: Zachery Brady Date: Tue, 28 Aug 2018 15:05:10 -0600 Subject: [PATCH 225/236] Update workspace bases and controller tabs. Updated workspace base tabs (WorkspaceTab/SubTab) to provide base initializer which takes weak-reference of supplied AbstractController and registers itself as an observer in order to close when the controller is deleted. Fixed error in workspace_widget where invalid index (None) was passed if user attempted to close tab via shortcut (Ctrl+W) when no tabs were opened. Removed model tabCloseRequested signal as it is no longer needed with new observer model. Fix issues in plot segment signalling with observers --- dgp/core/controllers/dataset_controller.py | 4 +- dgp/core/controllers/project_treemodel.py | 12 +---- dgp/gui/main.py | 2 +- dgp/gui/plotting/helpers.py | 11 ++-- dgp/gui/widgets/channel_control_widgets.py | 8 ++- dgp/gui/widgets/workspace_widget.py | 11 +++- dgp/gui/workspaces/base.py | 40 +++++++++++++-- dgp/gui/workspaces/dataset.py | 58 +++++++++++++--------- dgp/gui/workspaces/flight.py | 14 +++--- 9 files changed, 107 insertions(+), 53 deletions(-) diff --git a/dgp/core/controllers/dataset_controller.py b/dgp/core/controllers/dataset_controller.py index e2d5d5d..e82ba92 100644 --- a/dgp/core/controllers/dataset_controller.py +++ b/dgp/core/controllers/dataset_controller.py @@ -212,11 +212,11 @@ def get_parent(self) -> IFlightController: def add_datafile(self, datafile: DataFile) -> None: if datafile.group is DataType.GRAVITY: - self.datamodel.gravity = datafile + self.entity.gravity = datafile self._grav_file.set_datafile(datafile) self._gravity = DataFrame() elif datafile.group is DataType.TRAJECTORY: - self.datamodel.trajectory = datafile + self.entity.trajectory = datafile self._traj_file.set_datafile(datafile) self._trajectory = DataFrame() else: diff --git a/dgp/core/controllers/project_treemodel.py b/dgp/core/controllers/project_treemodel.py index be35952..5734ae2 100644 --- a/dgp/core/controllers/project_treemodel.py +++ b/dgp/core/controllers/project_treemodel.py @@ -36,10 +36,6 @@ class ProjectTreeModel(QStandardItemModel): Signal emitted to notify application that project data has changed. tabOpenRequested : pyqtSignal[IFlightController] Signal emitted to request a tab be opened for the supplied Flight - tabCloseRequested : pyqtSignal(IFlightController) - Signal notifying application that tab for given flight should be closed - This is called for example when a Flight is deleted to ensure any open - tabs referencing it are also deleted. progressNotificationRequested : pyqtSignal[ProgressEvent] Signal emitted to request a QProgressDialog from the main window. ProgressEvent is passed defining the parameters for the progress bar @@ -49,7 +45,6 @@ class ProjectTreeModel(QStandardItemModel): projectMutated = pyqtSignal() projectClosed = pyqtSignal(OID) tabOpenRequested = pyqtSignal(object, object) - tabCloseRequested = pyqtSignal(OID) progressNotificationRequested = pyqtSignal(ProgressEvent) sigDataChanged = pyqtSignal(object) @@ -98,16 +93,11 @@ def remove_project(self, child: IAirborneController, confirm: bool = True) -> No f"{child.get_attr('name')}?", self.parent()): return - for i in range(child.flight_model.rowCount()): - flt: IFlightController = child.flight_model.item(i, 0) - self.tabCloseRequested.emit(flt.uid) child.save() + child.delete() self.removeRow(child.row()) self.projectClosed.emit(child.uid) - def notify_tab_changed(self, flight: IFlightController): - flight.get_parent().activate_child(flight.uid) - def item_selected(self, index: QModelIndex): """Single-click handler for View events""" pass diff --git a/dgp/gui/main.py b/dgp/gui/main.py index 5c509cb..634e92d 100644 --- a/dgp/gui/main.py +++ b/dgp/gui/main.py @@ -73,7 +73,7 @@ def __init__(self, *args): # Model Event Signals # self.model.tabOpenRequested.connect(self._tab_open_requested) - self.model.tabCloseRequested.connect(self.workspace.close_tab) + # self.model.tabCloseRequested.connect(self.workspace.close_tab) self.model.progressNotificationRequested.connect(self._progress_event_handler) self.model.projectMutated.connect(self._project_mutated) self.model.projectClosed.connect(lambda x: self._update_recent_menu()) diff --git a/dgp/gui/plotting/helpers.py b/dgp/gui/plotting/helpers.py index 6d00223..9bd7a8a 100644 --- a/dgp/gui/plotting/helpers.py +++ b/dgp/gui/plotting/helpers.py @@ -174,7 +174,7 @@ def __init__(self, plot: PlotItem, left, right, label=None, movable=False): self.sigRegionChanged.connect(self._update_label_pos) self._menu = QMenu() - self._menu.addAction('Remove', lambda: self.sigDeleteRequested.emit()) + self._menu.addAction('Remove', self.sigDeleteRequested.emit) self._menu.addAction('Set Label', self._get_label_dlg) plot.addItem(self) @@ -332,11 +332,15 @@ def set_visibility(self, visible: bool): segment.setVisible(visible) segment._label.setVisible(visible) - def delete(self): + def remove(self): + self.delete(emit=False) + + def delete(self, emit=True): """Delete all child segments and emit a DELETE update""" for segment in self._segments: segment.remove() - self.emit_update(StateAction.DELETE) + if emit: + self.emit_update(StateAction.DELETE) def emit_update(self, action: StateAction = StateAction.UPDATE): """Emit a LineUpdate object with the current segment attributes @@ -377,4 +381,3 @@ def _update_done(self): """Emit an update object when the rate-limit timer has expired""" self._timer.stop() self.emit_update(StateAction.UPDATE) - diff --git a/dgp/gui/widgets/channel_control_widgets.py b/dgp/gui/widgets/channel_control_widgets.py index 1cbdbaa..f56fde4 100644 --- a/dgp/gui/widgets/channel_control_widgets.py +++ b/dgp/gui/widgets/channel_control_widgets.py @@ -1,4 +1,5 @@ # -*- coding: utf-8 -*- +import logging import itertools from functools import partial from typing import List, Dict, Tuple @@ -17,6 +18,7 @@ from dgp.gui.plotting.backends import GridPlotWidget, Axis, LINE_COLORS __all__ = ['ChannelController', 'ChannelItem'] +_log = logging.getLogger(__name__) class ColorPicker(QLabel): @@ -406,10 +408,14 @@ def _update_series(self, item: ChannelItem): def _remove_series(self, item: ChannelItem): line = self._active[item.uid] self.plotter.remove_plotitem(line) - del self._indexes[item.uid] + try: + del self._indexes[item.uid] + except KeyError: + pass def _channels_cleared(self): """Respond to plot notification that all lines have been cleared""" + _log.debug("Plot channels cleared") for i in range(self._model.rowCount()): item: ChannelItem = self._model.item(i) item.set_visible(False, emit=False) diff --git a/dgp/gui/widgets/workspace_widget.py b/dgp/gui/widgets/workspace_widget.py index ef8ecfa..e2e5536 100644 --- a/dgp/gui/widgets/workspace_widget.py +++ b/dgp/gui/widgets/workspace_widget.py @@ -78,6 +78,7 @@ def addTab(self, tab: WorkspaceTab, label: str = None): if label is None: label = tab.title super().addTab(tab, label) + tab.sigControllerUpdated.connect(lambda: self._update_name(tab)) self.setCurrentWidget(tab) # Utility functions for referencing Tab widgets by OID @@ -92,11 +93,15 @@ def get_tab_index(self, uid: OID): for i in range(self.count()): if uid == self.widget(i).uid: return i + return -1 def close_tab_by_index(self, index: int): + print(f"closing tab at index {index}") + if index == -1: + return tab = self.widget(index) - tab.close() self.removeTab(index) + tab.close() def close_tab(self, uid: OID): tab = self.get_tab(uid) @@ -105,3 +110,7 @@ def close_tab(self, uid: OID): index = self.get_tab_index(uid) if index is not None: self.removeTab(index) + + def _update_name(self, tab: WorkspaceTab): + index = self.indexOf(tab) + self.setTabText(index, tab.title) diff --git a/dgp/gui/workspaces/base.py b/dgp/gui/workspaces/base.py index d81ef5e..0ebd592 100644 --- a/dgp/gui/workspaces/base.py +++ b/dgp/gui/workspaces/base.py @@ -1,18 +1,23 @@ # -*- coding: utf-8 -*- import json +import logging import weakref -from PyQt5.QtCore import pyqtSignal +from PyQt5.QtCore import pyqtSignal, Qt from PyQt5.QtGui import QCloseEvent from PyQt5.QtWidgets import QWidget -from dgp.core import OID +from dgp.core import OID, StateAction +from dgp.core.controllers.controller_interfaces import AbstractController from dgp.gui import settings __all__ = ['WorkspaceTab', 'SubTab'] +_log = logging.getLogger(__name__) class WorkspaceTab(QWidget): + sigControllerUpdated = pyqtSignal() + def __init__(self, controller: AbstractController, *args, **kwargs): super().__init__(*args, **kwargs) self.setAttribute(Qt.WA_DeleteOnClose, True) @@ -22,7 +27,8 @@ def __init__(self, controller: AbstractController, *args, **kwargs): @property def uid(self) -> OID: - raise NotImplementedError + return self.controller.uid + @property def controller(self) -> AbstractController: return self._controller() @@ -48,17 +54,39 @@ def save_state(self, state=None) -> None: Override this method to provide state handling for a WorkspaceTab """ + _log.debug(f"Saving tab {self.__class__.__name__} ({self.uid}) state") _jsons = json.dumps(state) settings().setValue(self.state_key, _jsons) + def close(self): + # Note: this must be defined in order to provide a bound method for + super().close() + def closeEvent(self, event: QCloseEvent): self.save_state() + self.setParent(None) event.accept() + def _slot_update(self): + self.sigControllerUpdated.emit() + + def __del__(self): + _log.debug(f"Deleting {self.__class__.__name__}") + class SubTab(QWidget): sigLoaded = pyqtSignal(object) + def __init__(self, control: AbstractController, *args, **kwargs): + super().__init__(*args, **kwargs) + self.setAttribute(Qt.WA_DeleteOnClose, True) + control.register_observer(self, self.close, StateAction.DELETE) + self._control = weakref.ref(control) + + @property + def control(self): + return self._control() + def get_state(self): """Get a representation of the current state of the SubTab @@ -90,3 +118,9 @@ def restore_state(self, state: dict) -> None: """ pass + + def close(self): + super().close() + + def __del__(self): + _log.debug(f"Deleting {self.__class__.__name__}") diff --git a/dgp/gui/workspaces/dataset.py b/dgp/gui/workspaces/dataset.py index fa1f43e..927d336 100644 --- a/dgp/gui/workspaces/dataset.py +++ b/dgp/gui/workspaces/dataset.py @@ -1,5 +1,6 @@ # -*- coding: utf-8 -*- -import pandas as pd +import logging + from PyQt5 import QtWidgets from PyQt5.QtCore import Qt from PyQt5.QtWidgets import QAction, QSizePolicy @@ -13,23 +14,23 @@ from dgp.gui.utils import ThreadedFunction from .base import WorkspaceTab, SubTab +_log = logging.getLogger(__name__) + class SegmentSelectTab(SubTab): """Sub-tab displayed within the DataSetTab Workspace""" def __init__(self, dataset: DataSetController, parent=None): - super().__init__(parent=parent, flags=Qt.Widget) - self.dataset: DataSetController = dataset - self._state = {} + super().__init__(dataset, parent=parent, flags=Qt.Widget) self._plot = LineSelectPlot(rows=2) - self._plot.sigSegmentChanged.connect(self._on_modified_segment) + self._plot.sigSegmentChanged.connect(self._slot_segment_changed) - for segment in self.dataset.segments: + for segment in self.control.children: group = self._plot.add_segment(segment.get_attr('start'), segment.get_attr('stop'), segment.get_attr('label'), segment.uid, emit=False) - segment.add_reference(group) + segment.register_observer(group, group.remove, StateAction.DELETE) # Create/configure the tab layout/widgets/controls qhbl_main_layout = QtWidgets.QHBoxLayout(self) @@ -50,10 +51,14 @@ def __init__(self, dataset: DataSetController, parent=None): self.toolbar.addAction(qa_channel_toggle) # Load data channel selection widget - th = ThreadedFunction(self.dataset.dataframe, parent=self) + th = ThreadedFunction(self.control.dataframe, parent=self) th.result.connect(self._dataframe_loaded) th.start() + @property + def control(self) -> DataSetController: + return super().control + def _dataframe_loaded(self, df): data_cols = ('gravity', 'long_accel', 'cross_accel', 'beam', 'temp', 'pressure', 'Etemp', 'gps_week', 'gps_sow', 'lat', 'long', @@ -62,6 +67,7 @@ def _dataframe_loaded(self, df): stat_cols = [df[col] for col in df if col not in data_cols] self.controller.set_series(*cols) self.controller.set_binary_series(*stat_cols) + _log.debug("Dataframe loaded for SegmentSelectTab") self.sigLoaded.emit(self) def get_state(self): @@ -85,26 +91,26 @@ def get_state(self): def restore_state(self, state): self.controller.restore_state(state) - def _on_modified_segment(self, update: LineUpdate): + def _slot_segment_changed(self, update: LineUpdate): if update.action is StateAction.DELETE: - self.dataset.remove_segment(update.uid) - return - - start: pd.Timestamp = update.start - stop: pd.Timestamp = update.stop - assert isinstance(start, pd.Timestamp) - assert isinstance(stop, pd.Timestamp) - - if update.action is StateAction.UPDATE: - self.dataset.update_segment(update.uid, start, stop, update.label) - else: - seg = self.dataset.add_segment(update.uid, start, stop, update.label) - seg.add_reference(self._plot.get_segment(seg.uid)) + self.control.remove_child(update.uid, confirm=False) + elif update.action is StateAction.UPDATE: + seg_c = self.control.get_child(update.uid) + if update.start: + seg_c.set_attr('start', update.start) + if update.stop: + seg_c.set_attr('stop', update.stop) + if update.label: + seg_c.set_attr('label', update.label) + elif update.action is StateAction.CREATE: + seg_c = self.control.add_child(update) + seg_grp = self._plot.get_segment(update.uid) + seg_c.register_observer(seg_grp, seg_grp.remove, StateAction.DELETE) class DataTransformTab(SubTab): def __init__(self, dataset: DataSetController, parent=None): - super().__init__(parent=parent, flags=Qt.Widget) + super().__init__(dataset, parent=parent, flags=Qt.Widget) layout = QtWidgets.QHBoxLayout(self) plotter = TransformPlot(rows=1) plotter.setSizePolicy(QSizePolicy(QSizePolicy.MinimumExpanding, QSizePolicy.MinimumExpanding)) @@ -112,13 +118,17 @@ def __init__(self, dataset: DataSetController, parent=None): plot_layout.addWidget(plotter.get_toolbar(self), alignment=Qt.AlignRight) plot_layout.addWidget(plotter) - transform_control = TransformWidget(dataset, plotter) + transform_control = TransformWidget(self.control, plotter) layout.addWidget(transform_control, stretch=0, alignment=Qt.AlignLeft) layout.addLayout(plot_layout, stretch=5) self.sigLoaded.emit(self) + @property + def control(self) -> DataSetController: + return super().control + def get_state(self): pass diff --git a/dgp/gui/workspaces/flight.py b/dgp/gui/workspaces/flight.py index 4108afd..93ec11d 100644 --- a/dgp/gui/workspaces/flight.py +++ b/dgp/gui/workspaces/flight.py @@ -1,16 +1,18 @@ # -*- coding: utf-8 -*- from PyQt5 import QtWidgets from PyQt5.QtCore import Qt -from PyQt5.QtWidgets import QWidget from dgp.core.controllers.flight_controller import FlightController -from .base import WorkspaceTab +from .base import WorkspaceTab, SubTab -class FlightMapTab(QWidget): - def __init__(self, flight, parent=None): - super().__init__(parent=parent, flags=Qt.Widget) - self.flight = flight +class FlightMapTab(SubTab): + def __init__(self, flight: FlightController, parent=None): + super().__init__(flight, parent=parent, flags=Qt.Widget) + + @property + def control(self) -> FlightController: + return super().control class FlightTab(WorkspaceTab): From aff2275564c62dd37af40516763bc98db045f373 Mon Sep 17 00:00:00 2001 From: Zachery Brady Date: Tue, 28 Aug 2018 15:24:45 -0600 Subject: [PATCH 226/236] Refactor DataSetController to use standard child interface. Refactored DataSetController to use the standard child interface defined by AbstractController for managing its DataSegment's. Child DataFiles are still managed as a special case, but this removes some unnecessary complication with two sets of similar methods. --- dgp/core/controllers/controller_interfaces.py | 83 ++++++++++--------- dgp/core/controllers/dataset_controller.py | 79 ++++++------------ tests/test_dataset_controller.py | 46 +++++----- 3 files changed, 93 insertions(+), 115 deletions(-) diff --git a/dgp/core/controllers/controller_interfaces.py b/dgp/core/controllers/controller_interfaces.py index d939b6e..3ed8d51 100644 --- a/dgp/core/controllers/controller_interfaces.py +++ b/dgp/core/controllers/controller_interfaces.py @@ -153,14 +153,17 @@ def update(self) -> None: @property def children(self) -> Generator['AbstractController', None, None]: - """Return a generator of IChild objects specific to the parent. + """Yields children of this controller - Returns - ------- - Generator[AbstractController, None, None] + Override this property to provide generic access to controller children + + Yields + ------ + AbstractController + Children of this controller """ - raise NotImplementedError + yield from () def add_child(self, child) -> 'AbstractController': """Add a child object to the controller, and its underlying @@ -181,16 +184,29 @@ def add_child(self, child) -> 'AbstractController': :exc:`TypeError` If the child is not an allowed type for the controller. """ - if self.children is None: - raise TypeError(f"{self.__class__} does not support children") - raise NotImplementedError + pass - def remove_child(self, child, confirm: bool = True) -> bool: - if self.children is None: - return False - raise NotImplementedError + def remove_child(self, uid: OID, confirm: bool = True) -> bool: + """Remove a child from this controller, and notify the child of its deletion - def get_child(self, uid: Union[str, OID]) -> MaybeChild: + Parameters + ---------- + uid : OID + OID of the child to remove + confirm : bool, optional + Optionally request that the controller confirms the action before + removing the child, default is True + + Returns + ------- + bool + True on successful removal of child + False on failure (i.e. invalid uid supplied) + + """ + pass + + def get_child(self, uid: OID) -> MaybeChild: """Get a child of this object by matching OID Parameters @@ -200,8 +216,8 @@ def get_child(self, uid: Union[str, OID]) -> MaybeChild: Returns ------- - IChild or None - Returns the child object referred to by uid if it exists + MaybeChild + Returns the child controller object referred to by uid if it exists else None """ @@ -209,11 +225,14 @@ def get_child(self, uid: Union[str, OID]) -> MaybeChild: if uid == child.uid: return child - @property - def datamodel(self) -> object: - raise NotImplementedError + def __str__(self): + return str(self.entity) + def __hash__(self): + return hash(self.uid) + +# noinspection PyAbstractClass class IAirborneController(AbstractController): def add_flight_dlg(self): raise NotImplementedError @@ -243,15 +262,17 @@ def meter_model(self) -> QStandardItemModel: raise NotImplementedError +# noinspection PyAbstractClass class IFlightController(AbstractController): - def get_parent(self) -> IAirborneController: - raise NotImplementedError + pass +# noinspection PyAbstractClass class IMeterController(AbstractController): pass +# noinspection PyAbstractClass class IDataSetController(AbstractController): @property def hdfpath(self) -> Path: @@ -269,25 +290,5 @@ def add_datafile(self, datafile) -> None: """ raise NotImplementedError - def add_segment(self, uid: OID, start: float, stop: float, - label: str = ""): - raise NotImplementedError - - def get_segment(self, uid: OID): - raise NotImplementedError - - def remove_segment(self, uid: OID) -> None: - """ - Removes the specified data-segment from the DataSet. - - Parameters - ---------- - uid : :obj:`OID` - uid (OID or str) of the segment to be removed - - Raises - ------ - :exc:`KeyError` if supplied uid is not contained within the DataSet - - """ + def get_datafile(self, group): raise NotImplementedError diff --git a/dgp/core/controllers/dataset_controller.py b/dgp/core/controllers/dataset_controller.py index e82ba92..7cb5765 100644 --- a/dgp/core/controllers/dataset_controller.py +++ b/dgp/core/controllers/dataset_controller.py @@ -114,10 +114,6 @@ def __init__(self, dataset: DataSet, flight: IFlightController, self._clones: Set[DataSetController] = weakref.WeakSet() - @property - def children(self): - return None - def clone(self): clone = DataSetController(self.entity, self.get_parent(), self.project) self.register_clone(clone) @@ -145,11 +141,6 @@ def series_model(self) -> QStandardItemModel: def segment_model(self) -> QStandardItemModel: return self._segments.internal_model - @property - def segments(self) -> Generator[DataSegmentController, None, None]: - for i in range(self._segments.rowCount()): - yield self._segments.child(i) - @property def columns(self) -> List[str]: return [col for col in self.dataframe()] @@ -205,10 +196,7 @@ def align(self): interp_only=fields) self._gravity = n_grav self._trajectory = n_traj - self.log.info(f'DataFrame aligned.') - - def get_parent(self) -> IFlightController: - return self._flight() + _log.info(f'DataFrame aligned.') def add_datafile(self, datafile: DataFile) -> None: if datafile.group is DataType.GRAVITY: @@ -228,45 +216,32 @@ def add_datafile(self, datafile: DataFile) -> None: def get_datafile(self, group) -> DataFileController: return self._child_map[group] - def add_segment(self, uid: OID, start: Timestamp, stop: Timestamp, - label: str = "") -> DataSegmentController: - segment = DataSegment(uid, start, stop, - self._segments.rowCount(), label) - self._dataset.segments.append(segment) - seg_ctrl = DataSegmentController(segment, parent=self) - self._segments.appendRow(seg_ctrl) - return seg_ctrl - - def get_segment(self, uid: OID) -> DataSegmentController: - for segment in self._segments.items(): # type: DataSegmentController - if segment.uid == uid: - return segment - - def update_segment(self, uid: OID, start: Timestamp = None, - stop: Timestamp = None, label: str = None): - segment = self.get_segment(uid) - # TODO: Find a better way to deal with model item clones - if segment is None: - raise KeyError(f'Invalid UID, no segment exists with UID: {uid!s}') - - segment_clone = self.segment_model.item(segment.row()) - if start: - segment.set_attr('start', start) - segment_clone.set_attr('start', start) - if stop: - segment.set_attr('stop', stop) - segment_clone.set_attr('stop', stop) - if label: - segment.set_attr('label', label) - segment_clone.set_attr('label', label) - - def remove_segment(self, uid: OID): - segment = self.get_segment(uid) - if segment is None: - raise KeyError(f'Invalid UID, no segment exists with UID: {uid!s}') - - self._segments.removeRow(segment.row()) - self._dataset.segments.remove(segment.datamodel) + @property + def children(self): + for i in range(self._segments.rowCount()): + yield self._segments.child(i) + + def add_child(self, child: LineUpdate) -> DataSegmentController: + """Add a DataSegment as a child to this DataSet""" + + segment = DataSegment(child.uid, child.start, child.stop, + self._segments.rowCount(), label=child.label) + self.entity.segments.append(segment) + segment_c = DataSegmentController(segment, parent=self) + self._segments.appendRow(segment_c) + return segment_c + + def remove_child(self, uid: OID, confirm: bool = True): + # if confirm: + # pass + seg_c: DataSegmentController = self.get_child(uid) + if seg_c is None: + raise KeyError("Invalid uid supplied, child does not exist.") + + _log.debug(f'Deleting segment {seg_c} {uid}') + seg_c.delete() + self._segments.removeRow(seg_c.row()) + self.entity.segments.remove(seg_c.entity) def update(self): self.setText(self.entity.name) diff --git a/tests/test_dataset_controller.py b/tests/test_dataset_controller.py index 3d8b4bb..9893690 100644 --- a/tests/test_dataset_controller.py +++ b/tests/test_dataset_controller.py @@ -8,14 +8,15 @@ from PyQt5.QtGui import QStandardItemModel, QStandardItem from pandas import Timestamp, Timedelta, DataFrame +from dgp.core import OID, DataType, StateAction from dgp.core.hdf5_manager import HDF5Manager -from dgp.core import OID, DataType from dgp.core.models.datafile import DataFile from dgp.core.models.dataset import DataSet, DataSegment from dgp.core.models.flight import Flight from dgp.core.models.project import AirborneProject from dgp.core.controllers.project_controllers import AirborneProjectController from dgp.core.controllers.dataset_controller import DataSetController, DataSegmentController +from dgp.gui.plotting.helpers import LineUpdate def test_dataset_controller(tmpdir): @@ -42,16 +43,16 @@ def test_dataset_controller(tmpdir): assert isinstance(dsc, DataSetController) assert fc0 == dsc.get_parent() - assert grav_file == dsc.get_datafile(grav_file.group).datamodel - assert traj_file == dsc.get_datafile(traj_file.group).datamodel + assert grav_file == dsc.get_datafile(grav_file.group).entity + assert traj_file == dsc.get_datafile(traj_file.group).entity grav1_file = DataFile(DataType.GRAVITY, datetime.now(), Path(tmpdir).joinpath('gravity2.dat')) dsc.add_datafile(grav1_file) - assert grav1_file == dsc.get_datafile(grav1_file.group).datamodel + assert grav1_file == dsc.get_datafile(grav1_file.group).entity traj1_file = DataFile(DataType.TRAJECTORY, datetime.now(), Path(tmpdir).joinpath('traj2.txt')) dsc.add_datafile(traj1_file) - assert traj1_file == dsc.get_datafile(traj1_file.group).datamodel + assert traj1_file == dsc.get_datafile(traj1_file.group).entity invl_file = DataFile('marine', datetime.now(), Path(tmpdir)) with pytest.raises(TypeError): @@ -64,41 +65,42 @@ def test_dataset_controller(tmpdir): _seg_oid = OID(tag="seg1") _seg1_start = Timestamp.now() _seg1_stop = Timestamp.now() + Timedelta(hours=1) - seg1_ctrl = dsc.add_segment(_seg_oid, _seg1_start, _seg1_stop, label="seg1") - seg1: DataSegment = seg1_ctrl.datamodel + update = LineUpdate(StateAction.CREATE, _seg_oid, _seg1_start, _seg1_stop, "seg1") + seg1_ctrl = dsc.add_child(update) + seg1: DataSegment = seg1_ctrl.entity assert _seg1_start == seg1.start assert _seg1_stop == seg1.stop assert "seg1" == seg1.label - assert seg1_ctrl == dsc.get_segment(_seg_oid) + assert seg1_ctrl == dsc.get_child(_seg_oid) assert isinstance(seg1_ctrl, DataSegmentController) assert "seg1" == seg1_ctrl.get_attr('label') assert _seg_oid == seg1_ctrl.uid assert 2 == len(ds.segments) - assert ds.segments[1] == seg1_ctrl.datamodel + assert ds.segments[1] == seg1_ctrl.entity assert ds.segments[1] == seg1_ctrl.data(Qt.UserRole) # Segment updates _new_start = Timestamp.now() + Timedelta(hours=2) _new_stop = Timestamp.now() + Timedelta(hours=3) - dsc.update_segment(seg1.uid, _new_start, _new_stop) + seg = dsc.get_child(seg1.uid) + seg.set_attr("start", _new_start) + seg.set_attr("stop", _new_stop) assert _new_start == seg1.start assert _new_stop == seg1.stop assert "seg1" == seg1.label - dsc.update_segment(seg1.uid, label="seg1label") + seg.set_attr("label", "seg1label") assert "seg1label" == seg1.label invalid_uid = OID() - assert dsc.get_segment(invalid_uid) is None + assert dsc.get_child(invalid_uid) is None with pytest.raises(KeyError): - dsc.remove_segment(invalid_uid) - with pytest.raises(KeyError): - dsc.update_segment(invalid_uid, label="RaiseError") + dsc.remove_child(invalid_uid) assert 2 == len(ds.segments) - dsc.remove_segment(seg1.uid) + dsc.remove_child(seg1.uid) assert 1 == len(ds.segments) assert 1 == dsc._segments.rowCount() @@ -106,19 +108,19 @@ def test_dataset_controller(tmpdir): def test_dataset_datafiles(project: AirborneProject): prj_ctrl = AirborneProjectController(project) flt_ctrl = prj_ctrl.get_child(project.flights[0].uid) - ds_ctrl = flt_ctrl.get_child(flt_ctrl.datamodel.datasets[0].uid) + ds_ctrl = flt_ctrl.get_child(flt_ctrl.entity.datasets[0].uid) - grav_file = ds_ctrl.datamodel.gravity + grav_file = ds_ctrl.entity.gravity grav_file_ctrl = ds_ctrl.get_datafile(DataType.GRAVITY) - gps_file = ds_ctrl.datamodel.trajectory + gps_file = ds_ctrl.entity.trajectory gps_file_ctrl = ds_ctrl.get_datafile(DataType.TRAJECTORY) assert grav_file.uid == grav_file_ctrl.uid - assert ds_ctrl == grav_file_ctrl.dataset + assert ds_ctrl == grav_file_ctrl.get_parent() assert grav_file.group == grav_file_ctrl.group assert gps_file.uid == gps_file_ctrl.uid - assert ds_ctrl == gps_file_ctrl.dataset + assert ds_ctrl == gps_file_ctrl.get_parent() assert gps_file.group == gps_file_ctrl.group @@ -163,7 +165,7 @@ def test_dataset_data_api(project: AirborneProject, hdf5file, gravdata, gpsdata) HDF5Manager.save_data(gravdata, gravfile, hdf5file) HDF5Manager.save_data(gpsdata, gpsfile, hdf5file) - dataset_ctrl = DataSetController(dataset, flt_ctrl) + dataset_ctrl = DataSetController(dataset, flt_ctrl, project=prj_ctrl) gravity_frame = HDF5Manager.load_data(gravfile, hdf5file) assert gravity_frame.equals(dataset_ctrl.gravity) From ab44b4391686f9d763660d0b92b96f4d7abd07aa Mon Sep 17 00:00:00 2001 From: Zachery Brady Date: Tue, 28 Aug 2018 15:29:00 -0600 Subject: [PATCH 227/236] Add documentation, fix breaking tests. Add documentation to AbstractController and other various changes. Fix breaking tests due to API changes/refactoring. --- .coveragerc | 1 + dgp/__main__.py | 11 ++--- dgp/core/controllers/controller_interfaces.py | 46 +++++++++++++++++++ dgp/core/controllers/dataset_controller.py | 8 +++- dgp/core/controllers/flight_controller.py | 10 ++-- tests/conftest.py | 2 +- tests/test_controllers.py | 39 ++-------------- tests/test_gui_main.py | 27 ----------- 8 files changed, 68 insertions(+), 76 deletions(-) diff --git a/.coveragerc b/.coveragerc index dd8a43c..28ce312 100644 --- a/.coveragerc +++ b/.coveragerc @@ -5,6 +5,7 @@ branch = True omit = dgp/resources_rc.py dgp/gui/ui/*.py + dgp/__main__.py exclude_lines = pragma: no cover diff --git a/dgp/__main__.py b/dgp/__main__.py index a2c8639..4e5faf1 100644 --- a/dgp/__main__.py +++ b/dgp/__main__.py @@ -10,8 +10,10 @@ from dgp.gui.main import MainWindow +app = None + -def excepthook(type_, value, traceback_): # pragma: no cover +def excepthook(type_, value, traceback_): """This allows IDE to properly display unhandled exceptions which are otherwise silently ignored as the application is terminated. Override default excepthook with @@ -23,11 +25,8 @@ def excepthook(type_, value, traceback_): # pragma: no cover QtCore.qFatal('') -app = None -_align = Qt.AlignBottom | Qt.AlignHCenter - - -def main(): # pragma: no cover +def main(): + _align = Qt.AlignBottom | Qt.AlignHCenter global app sys.excepthook = excepthook app = QApplication(sys.argv) diff --git a/dgp/core/controllers/controller_interfaces.py b/dgp/core/controllers/controller_interfaces.py index 3ed8d51..4107890 100644 --- a/dgp/core/controllers/controller_interfaces.py +++ b/dgp/core/controllers/controller_interfaces.py @@ -26,6 +26,51 @@ class AbstractController(QStandardItem, AttributeProxy): + """AbstractController provides a base interface for creating Controllers + + This class provides some concrete implementations for various features + common to all controllers: + - Encapsulation of a model (dgp.core.models) object + - Exposure of the underlying model entities' UID + - Observer registration (notify observers on StateAction's) + - Clone registration (notify clones of updates to the base object) + - Child lookup function (get_child) to find child by its UID + + The following methods must be explicitly implemented by subclasses: + - clone() + - menu @property + + The following methods may be optionally implemented by subclasses: + - children @property + - add_child() + - remove_child() + + Parameters + ---------- + model + The underlying model (from dgp.core.models) entity of this controller + project : IAirborneController, optional + A weak-reference is stored to the project controller for direct access + by the controller via the :prop:`project` @property + parent : AbstractController, optional + A strong-reference is maintained to the parent controller object, + accessible via the :meth:`get_parent` method + *args + Positional arguments are supplied to the QStandardItem constructor + *kwargs + Keyword arguments are supplied to the QStandardItem constructor + + Notes + ----- + When removing/deleting a controller, the delete() method should be called on + the child, in order for it to notify any subscribers of its impending doom. + + The update method should be extended by subclasses in order to perform + visual updates (e.g. Item text, tooltips) when an entity attribute has been + updated (via AttributeProxy::set_attr), call the super() method to propagate + updates to any observers automatically. + + """ def __init__(self, model, *args, project=None, parent=None, **kwargs): super().__init__(*args, **kwargs) self._model = model @@ -96,6 +141,7 @@ def menu(self) -> List[MenuBinding]: @property def parent_widget(self) -> Union[QWidget, None]: + """Returns the parent QWidget of this items' QAbstractModel""" try: return self.model().parent() except AttributeError: diff --git a/dgp/core/controllers/dataset_controller.py b/dgp/core/controllers/dataset_controller.py index 7cb5765..9fa2fb4 100644 --- a/dgp/core/controllers/dataset_controller.py +++ b/dgp/core/controllers/dataset_controller.py @@ -38,6 +38,7 @@ def __init__(self, segment: DataSegment, parent: IDataSetController = None): self._menu = [ ('addAction', ('Delete', self._action_delete)), + ('addAction', ('Properties', self._action_properties)) ] @property @@ -61,6 +62,8 @@ def update(self): self.setText(str(self.entity)) self.setToolTip(repr(self.entity)) + def _action_properties(self): + pass class DataSetController(IDataSetController): @@ -109,7 +112,7 @@ def __init__(self, dataset: DataSet, flight: IFlightController, ('addAction', ('Align Data', self.align)), ('addSeparator', ()), ('addAction', ('Delete', self._action_delete)), - ('addAction', ('Properties', lambda: None)) + ('addAction', ('Properties', self._action_properties)) ] self._clones: Set[DataSetController] = weakref.WeakSet() @@ -274,3 +277,6 @@ def _action_set_sensor_dlg(self): def _action_delete(self, confirm: bool = True): self.get_parent().remove_child(self.uid, confirm) + + def _action_properties(self): + pass diff --git a/dgp/core/controllers/flight_controller.py b/dgp/core/controllers/flight_controller.py index 8405726..09de874 100644 --- a/dgp/core/controllers/flight_controller.py +++ b/dgp/core/controllers/flight_controller.py @@ -68,11 +68,9 @@ def __init__(self, flight: Flight, project: IAirborneController): ('addAction', ('Import Trajectory', lambda: self._load_file_dialog(DataType.TRAJECTORY))), ('addSeparator', ()), - ('addAction', (f'Delete {self.entity.name}', - lambda: self._delete_self(confirm=True))), - ('addAction', ('Rename Flight', lambda: self._set_name())), - ('addAction', ('Properties', - lambda: self._show_properties_dlg())) + ('addAction', (f'Delete {self.entity.name}', self._action_delete_self)), + ('addAction', ('Rename Flight', self._set_name)), + ('addAction', ('Properties', self._show_properties_dlg)) ] self.update() @@ -185,7 +183,7 @@ def _activate_self(self): def _add_dataset(self): self.add_child(DataSet(name=f'DataSet-{self.datasets.rowCount()}')) - def _delete_self(self, confirm: bool = True): + def _action_delete_self(self, confirm: bool = True): self.get_parent().remove_child(self.uid, confirm) def _set_name(self): # pragma: no cover diff --git a/tests/conftest.py b/tests/conftest.py index 1e3c0f4..c94168c 100644 --- a/tests/conftest.py +++ b/tests/conftest.py @@ -142,7 +142,7 @@ def prj_ctrl(project): @pytest.fixture def flt_ctrl(prj_ctrl: AirborneProjectController): - return prj_ctrl.get_child(prj_ctrl.datamodel.flights[0].uid) + return prj_ctrl.get_child(prj_ctrl.entity.flights[0].uid) @pytest.fixture(scope='module') diff --git a/tests/test_controllers.py b/tests/test_controllers.py index 43fada6..696586d 100644 --- a/tests/test_controllers.py +++ b/tests/test_controllers.py @@ -71,7 +71,7 @@ def test_gravimeter_controller(tmpdir): assert hash(meter_ctrl) meter_ctrl_clone = meter_ctrl.clone() - assert meter == meter_ctrl_clone.datamodel + assert meter == meter_ctrl_clone.entity assert "AT1A-Test" == meter_ctrl.data(Qt.DisplayRole) meter_ctrl.set_attr('name', "AT1A-New") @@ -119,7 +119,7 @@ def test_flight_controller(project: AirborneProject): assert fc.get_child(dataset2.uid) is None fc.remove_child(dsc.uid, confirm=False) - assert 0 == len(fc.datamodel.datasets) + assert 0 == len(fc.entity.datasets) def test_FlightController_bindings(project: AirborneProject): @@ -148,7 +148,7 @@ def test_airborne_project_controller(project): assert 2 == len(project.gravimeters) project_ctrl = AirborneProjectController(project) - assert project == project_ctrl.datamodel + assert project == project_ctrl.entity assert project_ctrl.path == project.path # Need a model to have a parent assert project_ctrl.parent_widget is None @@ -179,7 +179,7 @@ def test_airborne_project_controller(project): fc2 = project_ctrl.get_child(flight2.uid) assert isinstance(fc2, FlightController) - assert flight2 == fc2.datamodel + assert flight2 == fc2.entity assert 5 == project_ctrl.flights.rowCount() project_ctrl.remove_child(flight2.uid, confirm=False) @@ -196,34 +196,3 @@ def test_airborne_project_controller(project): jsons = project_ctrl.save(to_file=False) assert isinstance(jsons, str) - -def test_parent_child_activations(project: AirborneProject): - """Test child/parent interaction of DataSet Controller with - FlightController - """ - prj_ctrl = AirborneProjectController(project) - flt_ctrl = prj_ctrl.get_child(project.flights[0].uid) - flt2 = Flight("Flt-2") - flt2_ctrl = prj_ctrl.add_child(flt2) - - _ds_name = "DataSet-Test" - dataset = DataSet(name=_ds_name) - ds_ctrl = flt_ctrl.add_child(dataset) - - assert prj_ctrl is flt_ctrl.get_parent() - assert flt_ctrl is ds_ctrl.get_parent() - - assert prj_ctrl.can_activate - assert flt_ctrl.can_activate - assert ds_ctrl.can_activate - - assert not prj_ctrl.is_active - assert not flt_ctrl.is_active - - from dgp.core.types.enumerations import StateColor - assert StateColor.INACTIVE.value == prj_ctrl.background().color().name() - assert StateColor.INACTIVE.value == flt_ctrl.background().color().name() - assert StateColor.INACTIVE.value == ds_ctrl.background().color().name() - - prj_ctrl.set_active(True) - assert StateColor.ACTIVE.value == prj_ctrl.background().color().name() diff --git a/tests/test_gui_main.py b/tests/test_gui_main.py index f5ba82b..845a503 100644 --- a/tests/test_gui_main.py +++ b/tests/test_gui_main.py @@ -60,33 +60,6 @@ def test_MainWindow_tab_open_requested(project, window): assert 1 == window.workspace.count() -def test_MainWindow_tab_close_requested(project, window): - tab_close_spy = QSignalSpy(window.model.tabCloseRequested) - assert 0 == len(tab_close_spy) - assert 0 == window.workspace.count() - - flt_ctrl = window.model.active_project.get_child(project.flights[0].uid) - - window.model.item_activated(flt_ctrl.index()) - assert 1 == window.workspace.count() - - window.model.close_flight(flt_ctrl) - assert 1 == len(tab_close_spy) - assert flt_ctrl.uid == tab_close_spy[0][0] - assert window.workspace.get_tab(flt_ctrl.uid) is None - - window.model.item_activated(flt_ctrl.index()) - assert 1 == window.workspace.count() - assert window.workspace.get_tab(flt_ctrl.uid) is not None - - window.workspace.tabCloseRequested.emit(0) - assert 0 == window.workspace.count() - - assert 1 == len(tab_close_spy) - window.model.close_flight(flt_ctrl) - assert 2 == len(tab_close_spy) - - def test_MainWindow_project_mutated(window: MainWindow): assert not window.isWindowModified() window.model.projectMutated.emit() From 14b6b038a4f310a1ec2826fb68c6b26c18b17268 Mon Sep 17 00:00:00 2001 From: Zachery Brady Date: Fri, 7 Sep 2018 13:16:20 -0600 Subject: [PATCH 228/236] Updated documentation Updated and added to documentation for various dgp/core and dgp/gui packages/modules. Improved docstrings in controller_interfaces for AbstractController Add workspaces documentation for GUI workspace tabs. --- dgp/core/controllers/controller_interfaces.py | 95 ++++++++++++++++--- docs/source/core/controllers.rst | 35 ++++--- docs/source/gui/index.rst | 15 +-- docs/source/gui/workspaces.rst | 82 ++++++++++++++++ 4 files changed, 193 insertions(+), 34 deletions(-) create mode 100644 docs/source/gui/workspaces.rst diff --git a/dgp/core/controllers/controller_interfaces.py b/dgp/core/controllers/controller_interfaces.py index 4107890..b1de3e2 100644 --- a/dgp/core/controllers/controller_interfaces.py +++ b/dgp/core/controllers/controller_interfaces.py @@ -28,8 +28,11 @@ class AbstractController(QStandardItem, AttributeProxy): """AbstractController provides a base interface for creating Controllers + .. versionadded:: 0.1.0 + This class provides some concrete implementations for various features common to all controllers: + - Encapsulation of a model (dgp.core.models) object - Exposure of the underlying model entities' UID - Observer registration (notify observers on StateAction's) @@ -37,10 +40,12 @@ class AbstractController(QStandardItem, AttributeProxy): - Child lookup function (get_child) to find child by its UID The following methods must be explicitly implemented by subclasses: + - clone() - menu @property The following methods may be optionally implemented by subclasses: + - children @property - add_child() - remove_child() @@ -49,10 +54,10 @@ class AbstractController(QStandardItem, AttributeProxy): ---------- model The underlying model (from dgp.core.models) entity of this controller - project : IAirborneController, optional + project : :class:`IAirborneController`, optional A weak-reference is stored to the project controller for direct access - by the controller via the :prop:`project` @property - parent : AbstractController, optional + by the controller via the :meth:`project` @property + parent : :class:`AbstractController`, optional A strong-reference is maintained to the parent controller object, accessible via the :meth:`get_parent` method *args @@ -71,6 +76,7 @@ class AbstractController(QStandardItem, AttributeProxy): updates to any observers automatically. """ + def __init__(self, model, *args, project=None, parent=None, **kwargs): super().__init__(*args, **kwargs) self._model = model @@ -87,7 +93,14 @@ def __init__(self, model, *args, project=None, parent=None, **kwargs): @property def uid(self) -> OID: - """Return the unique Object IDentifier for the controllers' model""" + """Return the unique Object IDentifier for the controllers' model + + Returns + ------- + oid : :class:`~dgp.core.OID` + Unique Identifier of this Controller/Entity + + """ return self._model.uid @property @@ -97,11 +110,24 @@ def entity(self): @property def project(self) -> 'IAirborneController': + """Return a reference to the top-level project owner of this controller + + Returns + ------- + :class:`IAirborneController` or :const:`None` + + """ return self._project() if self._project is not None else None @property def clones(self): - """Yields any active (referenced) clones of this controller""" + """Yields any active (referenced) clones of this controller + + Yields + ------ + :class:`AbstractController` + + """ for clone in self._clones: yield clone @@ -111,18 +137,40 @@ def clone(self): Must be overridden by subclasses, subclasses should call register_clone on the cloned instance to ensure update events are propagated to the clone. + + Returns + ------- + :class:`AbstractController` + Clone of this controller with a shared reference to the entity + """ raise NotImplementedError @property def is_clone(self) -> bool: + """Determine if this controller is a clone + + Returns + ------- + bool + True if this controller is a clone, else False + + """ return self.__cloned @is_clone.setter def is_clone(self, value: bool): self.__cloned = value - def register_clone(self, clone: 'AbstractController'): + def register_clone(self, clone: 'AbstractController') -> None: + """Registers a cloned copy of this controller for updates + + Parameters + ---------- + clone : :class:`AbstractController` + The cloned copy of the root controller to register + + """ clone.is_clone = True self._clones.add(clone) @@ -141,20 +189,39 @@ def menu(self) -> List[MenuBinding]: @property def parent_widget(self) -> Union[QWidget, None]: - """Returns the parent QWidget of this items' QAbstractModel""" + """Get the parent QWidget of this items' QAbstractModel + + Returns + ------- + :class:`pyqt.QWidget` or :const:`None` + QWidget parent if it exists, else None + """ try: return self.model().parent() except AttributeError: return None def get_parent(self) -> 'AbstractController': + """Get the parent controller of this controller + + Notes + ----- + :meth:`get_parent` and :meth:`set_parent` are defined as methods to + avoid naming conflicts with :class:`pyqt.QStandardItem` parent method. + + Returns + ------- + :class:`AbstractController` or None + Parent controller (if it exists) of this controller + + """ return self._parent def set_parent(self, parent: 'AbstractController'): self._parent = parent def register_observer(self, observer, callback, state: StateAction) -> None: - """Register an observer with this controller + """Register an observer callback with this controller for the given state Observers will be notified when the controller undergoes the applicable StateAction (UPDATE/DELETE), via the supplied callback method. @@ -189,9 +256,7 @@ def delete(self) -> None: clone.delete() def update(self) -> None: - """Notify any observers and clones that the controller state has updated - - """ + """Notify observers and clones that the controller has updated""" for cb in self._observers[StateAction.UPDATE].values(): cb()() for clone in self.clones: @@ -205,8 +270,8 @@ def children(self) -> Generator['AbstractController', None, None]: Yields ------ - AbstractController - Children of this controller + :class:`AbstractController` + Child controllers """ yield from () @@ -228,7 +293,7 @@ def add_child(self, child) -> 'AbstractController': Raises ------ :exc:`TypeError` - If the child is not an allowed type for the controller. + If the child is not a permissible type for the controller. """ pass @@ -262,7 +327,7 @@ def get_child(self, uid: OID) -> MaybeChild: Returns ------- - MaybeChild + :const:`MaybeChild` Returns the child controller object referred to by uid if it exists else None diff --git a/docs/source/core/controllers.rst b/docs/source/core/controllers.rst index 31c3ced..4b28c28 100644 --- a/docs/source/core/controllers.rst +++ b/docs/source/core/controllers.rst @@ -22,15 +22,18 @@ TODO: Add Controller Hierarchy like in models.rst Controller Development Principles --------------------------------- +.. py:currentmodule:: dgp.core.controllers + Controllers typically should match 1:1 a model class, though there are cases -for creating utility controllers such as the :class:`ProjectFolder` which is -a utility class for grouping items visually in the project's tree view. +for creating controllers such as the :class:`~.project_containers.ProjectFolder` +which is a utility class for grouping items visually in the project's tree view. -Controllers should at minimum subclass :class:`AbstractController` which configures -inheritance for :class:`QStandardItem` and :class:`AttributeProxy`. For more -complex and widely used controllers, a dedicated interface should be created -following the same naming scheme - particularly where circular dependencies -may be introduced. +Controllers should at minimum subclass +:class:`~.controller_interfaces.AbstractController` which configures inheritance +for :class:`QStandardItem` and :class:`~.controller_mixins.AttributeProxy`. +For more complex and widely used controllers, a dedicated interface should be +created following the same naming scheme - particularly where circular +dependencies may be introduced. Context Menu Declarations @@ -74,7 +77,6 @@ In most cases the concrete subclasses of these interfaces cannot be directly imported into other controllers as this would cause circular import loops -.. py:module:: dgp.core.controllers e.g. the :class:`~.flight_controller.FlightController` is a child of an :class:`~.project_controllers.AirborneProjectController`, @@ -101,16 +103,16 @@ type hinting within the development environment in such cases. :show-inheritance: :undoc-members: -.. autoclass:: IParent - :undoc-members: - -.. autoclass:: IChild +.. autoclass:: IDataSetController + :show-inheritance: :undoc-members: Controllers ----------- +**Concrete controller implementations** + .. py:module:: dgp.core.controllers.project_controllers .. autoclass:: AirborneProjectController :undoc-members: @@ -136,6 +138,15 @@ Controllers :undoc-members: :show-inheritance: +Containers +---------- + +.. py:module:: dgp.core.controllers.project_containers +.. autoclass:: ProjectFolder + :undoc-members: + :show-inheritance: + + Utility/Helper Modules ---------------------- diff --git a/docs/source/gui/index.rst b/docs/source/gui/index.rst index b4ca14d..b4dc2a5 100644 --- a/docs/source/gui/index.rst +++ b/docs/source/gui/index.rst @@ -15,15 +15,16 @@ files, which are then compiled into a Python source files which define individual UI components. The .ui source files are contained within the ui directory. -.. seealso:: - - `Qt 5 Documentation `__ - - `PyQt5 Documentation `__ - - .. toctree:: :caption: Sub Packages :maxdepth: 1 plotting.rst + workspaces.rst + + +.. seealso:: + + `Qt 5 Documentation `__ + + `PyQt5 Documentation `__ diff --git a/docs/source/gui/workspaces.rst b/docs/source/gui/workspaces.rst new file mode 100644 index 0000000..6e072f0 --- /dev/null +++ b/docs/source/gui/workspaces.rst @@ -0,0 +1,82 @@ +dgp.gui.workspaces package +========================== + + +The Workspaces sub-package defines GUI widgets for various controller +contexts in the DGP application. +The idea being that there are naturally different standard ways in which the +user will interact with different project objects/controllers, depending on the +type of the object. + +The workspaces are intended to be displayed within a QTabWidget within the +application so that the user may easily navigate between multiple open +workspaces. + +Each workspace defines its own custom widget(s) for interacting & manipulating +data associated with its underlying controller (:class:`AbstractController`). + +Workspaces may also contain sub-tabs, for example the :class:`DataSetTab` +defines sub-tabs for viewing raw-data and selecting segments, and a tab for +executing transform graphs on the data. + +.. contents:: + :depth: 3 + + +Base Interfaces +--------------- + +.. versionadded:: 0.1.0 + +.. automodule:: dgp.gui.workspaces.base + + +Workspaces +---------- + +Project Workspace +^^^^^^^^^^^^^^^^^ + +.. warning:: Not yet implemented + +.. note:: + + Future Planning: Project Workspace may display a map interface which can + overlay each flight's trajectory path from the flights within the project. + Some interface to allow comparison of flight data may also be integrated into + this workspace. + +.. automodule:: dgp.gui.workspaces.project + +Flight Workspace +^^^^^^^^^^^^^^^^ +.. warning:: Not yet implemented + +.. note:: + + Future Planning: Similar to the project workspace, the flight workspace may + be used to display a map of the selected flight. + A dashboard type widget may be implemented to show details of the flight, + and to allow users to view/configure flight specific parameters. + +.. automodule:: dgp.gui.workspaces.flight + + +DataSet Workspace +^^^^^^^^^^^^^^^^^ +.. versionadded:: 0.1.0 + +.. automodule:: dgp.gui.workspaces.dataset + + + +DataFile Workspace +^^^^^^^^^^^^^^^^^^ +.. warning:: Not yet implemented + +.. note:: + + Future Planning: The DataFile workspace may be used to allow users to view + and possibly edit raw data within the interface in a spreadsheet style + view/control. + From e7dce4148ebdea8ca0af4ac78069e64c1bedbf7a Mon Sep 17 00:00:00 2001 From: Zachery Brady Date: Fri, 7 Sep 2018 16:01:27 -0600 Subject: [PATCH 229/236] Refactor controllers, project is now a mandatory parameter. All controllers now maintain a weakref to the project which owns them, this helps to simplify some actions and reduce chained get_parent calls when child objects need to call a project function or attribute. --- dgp/core/controllers/controller_interfaces.py | 4 ++-- dgp/core/controllers/datafile_controller.py | 6 +++--- dgp/core/controllers/dataset_controller.py | 20 +++++++++---------- dgp/core/controllers/flight_controller.py | 6 +++--- dgp/core/controllers/gravimeter_controller.py | 6 +++--- dgp/core/controllers/project_controllers.py | 8 ++++---- 6 files changed, 25 insertions(+), 25 deletions(-) diff --git a/dgp/core/controllers/controller_interfaces.py b/dgp/core/controllers/controller_interfaces.py index b1de3e2..6e492fa 100644 --- a/dgp/core/controllers/controller_interfaces.py +++ b/dgp/core/controllers/controller_interfaces.py @@ -54,7 +54,7 @@ class AbstractController(QStandardItem, AttributeProxy): ---------- model The underlying model (from dgp.core.models) entity of this controller - project : :class:`IAirborneController`, optional + project : :class:`IAirborneController` A weak-reference is stored to the project controller for direct access by the controller via the :meth:`project` @property parent : :class:`AbstractController`, optional @@ -77,7 +77,7 @@ class AbstractController(QStandardItem, AttributeProxy): """ - def __init__(self, model, *args, project=None, parent=None, **kwargs): + def __init__(self, model, project, *args, parent=None, **kwargs): super().__init__(*args, **kwargs) self._model = model self._project = ref(project) if project is not None else None diff --git a/dgp/core/controllers/datafile_controller.py b/dgp/core/controllers/datafile_controller.py index 12460e0..229be1b 100644 --- a/dgp/core/controllers/datafile_controller.py +++ b/dgp/core/controllers/datafile_controller.py @@ -15,9 +15,9 @@ class DataFileController(AbstractController): - - def __init__(self, datafile: DataFile, parent: IDataSetController = None): - super().__init__(model=datafile, parent=parent) + def __init__(self, datafile: DataFile, project: AbstractController, + parent: IDataSetController = None): + super().__init__(datafile, project, parent=parent) self.log = logging.getLogger(__name__) self.set_datafile(datafile) diff --git a/dgp/core/controllers/dataset_controller.py b/dgp/core/controllers/dataset_controller.py index 9fa2fb4..f20826d 100644 --- a/dgp/core/controllers/dataset_controller.py +++ b/dgp/core/controllers/dataset_controller.py @@ -13,7 +13,7 @@ from dgp.core.hdf5_manager import HDF5Manager from dgp.core.models.datafile import DataFile from dgp.core.models.dataset import DataSet, DataSegment -from dgp.core.types.enumerations import DataType, StateAction +from dgp.core.types.enumerations import DataType from dgp.lib.etc import align_frames from dgp.gui.plotting.helpers import LineUpdate @@ -32,8 +32,9 @@ class DataSegmentController(AbstractController): Implements reference tracking feature allowing the mutation of segments representations displayed on a plot surface. """ - def __init__(self, segment: DataSegment, parent: IDataSetController = None): - super().__init__(model=segment, parent=parent) + def __init__(self, segment: DataSegment, project, + parent: IDataSetController = None): + super().__init__(segment, project, parent=parent) self.update() self._menu = [ @@ -50,7 +51,7 @@ def menu(self): return self._menu def clone(self) -> 'DataSegmentController': - clone = DataSegmentController(self.entity) + clone = DataSegmentController(self.entity, self.project, self.get_parent()) self.register_clone(clone) return clone @@ -67,19 +68,18 @@ def _action_properties(self): class DataSetController(IDataSetController): - def __init__(self, dataset: DataSet, flight: IFlightController, - project=None): + def __init__(self, dataset: DataSet, project, flight: IFlightController): super().__init__(model=dataset, project=project, parent=flight) self.setIcon(Icon.PLOT_LINE.icon()) - self._grav_file = DataFileController(self.entity.gravity, self) - self._traj_file = DataFileController(self.entity.trajectory, self) + self._grav_file = DataFileController(self.entity.gravity, self.project, self) + self._traj_file = DataFileController(self.entity.trajectory, self.project, self) self._child_map = {DataType.GRAVITY: self._grav_file, DataType.TRAJECTORY: self._traj_file} self._segments = ProjectFolder("Segments", Icon.LINE_MODE.icon()) for segment in dataset.segments: - seg_ctrl = DataSegmentController(segment, parent=self) + seg_ctrl = DataSegmentController(segment, project, parent=self) self._segments.appendRow(seg_ctrl) self.appendRow(self._grav_file) @@ -230,7 +230,7 @@ def add_child(self, child: LineUpdate) -> DataSegmentController: segment = DataSegment(child.uid, child.start, child.stop, self._segments.rowCount(), label=child.label) self.entity.segments.append(segment) - segment_c = DataSegmentController(segment, parent=self) + segment_c = DataSegmentController(segment, self.project, parent=self) self._segments.appendRow(segment_c) return segment_c diff --git a/dgp/core/controllers/flight_controller.py b/dgp/core/controllers/flight_controller.py index 09de874..e0589db 100644 --- a/dgp/core/controllers/flight_controller.py +++ b/dgp/core/controllers/flight_controller.py @@ -51,7 +51,7 @@ def __init__(self, flight: Flight, project: IAirborneController): self._dataset_model = QStandardItemModel() for dataset in self.entity.datasets: - control = DataSetController(dataset, self, project) + control = DataSetController(dataset, project, self) self.appendRow(control) self._dataset_model.appendRow(control.clone()) @@ -97,7 +97,7 @@ def update(self): super().update() def clone(self): - clone = FlightController(self.entity, project=self.get_parent()) + clone = FlightController(self.entity, self.project) self.register_clone(clone) return clone @@ -126,7 +126,7 @@ def add_child(self, child: DataSet) -> DataSetController: f'FlightController, must be {type(DataSet)}') self.entity.datasets.append(child) - control = DataSetController(child, self, project=self.project) + control = DataSetController(child, self.project, self) self.appendRow(control) self._dataset_model.appendRow(control.clone()) self.update() diff --git a/dgp/core/controllers/gravimeter_controller.py b/dgp/core/controllers/gravimeter_controller.py index 81b33b3..98638b5 100644 --- a/dgp/core/controllers/gravimeter_controller.py +++ b/dgp/core/controllers/gravimeter_controller.py @@ -9,8 +9,8 @@ class GravimeterController(IMeterController): - def __init__(self, meter: Gravimeter, parent: IAirborneController = None): - super().__init__(model=meter, parent=parent) + def __init__(self, meter: Gravimeter, project, parent: IAirborneController = None): + super().__init__(meter, project, parent=parent) self.setIcon(Icon.METER.icon()) self._bindings = [ @@ -28,7 +28,7 @@ def menu(self): return self._bindings def clone(self): - clone = GravimeterController(self.entity, self.get_parent()) + clone = GravimeterController(self.entity, self.project) self.register_clone(clone) return clone diff --git a/dgp/core/controllers/project_controllers.py b/dgp/core/controllers/project_controllers.py index a6063ea..9ca9adf 100644 --- a/dgp/core/controllers/project_controllers.py +++ b/dgp/core/controllers/project_controllers.py @@ -45,7 +45,7 @@ class AirborneProjectController(IAirborneController): """ def __init__(self, project: AirborneProject, path: Path = None): - super().__init__(model=project) + super().__init__(project, self) self.log = logging.getLogger(__name__) if path: self.entity.path = path @@ -66,7 +66,7 @@ def __init__(self, project: AirborneProject, path: Path = None): # It is important that GravimeterControllers are defined before Flights # Flights may create references to a Gravimeter object, but not vice versa for meter in self.entity.gravimeters: - controller = GravimeterController(meter, parent=self) + controller = GravimeterController(meter, self, parent=self) self.meters.appendRow(controller) for flight in self.entity.flights: @@ -142,10 +142,10 @@ def flight_model(self) -> QStandardItemModel: def add_child(self, child: Union[Flight, Gravimeter]) -> Union[FlightController, GravimeterController]: if isinstance(child, Flight): - controller = FlightController(child, project=self) + controller = FlightController(child, self) self.flights.appendRow(controller) elif isinstance(child, Gravimeter): - controller = GravimeterController(child, parent=self) + controller = GravimeterController(child, self, parent=self) self.meters.appendRow(controller) else: raise ValueError("{0!r} is not a valid child type for {1.__name__}".format(child, self.__class__)) From 6682b85e7a6e5bbabe503c69042f6362346803c8 Mon Sep 17 00:00:00 2001 From: Zachery Brady Date: Fri, 7 Sep 2018 16:02:28 -0600 Subject: [PATCH 230/236] Add tests for controller observer/clone behavior. Add new tests to verify observer behavior and clone updates. Fix tests due to AbstractController refactoring --- tests/conftest.py | 5 ++- tests/test_controller_observers.py | 68 ++++++++++++++++++++++++++++++ tests/test_controllers.py | 2 +- tests/test_dataset_controller.py | 29 +------------ 4 files changed, 74 insertions(+), 30 deletions(-) create mode 100644 tests/test_controller_observers.py diff --git a/tests/conftest.py b/tests/conftest.py index c94168c..307d4cf 100644 --- a/tests/conftest.py +++ b/tests/conftest.py @@ -50,7 +50,10 @@ def shim_settings(): settings = QSettings(QSettings.IniFormat, QSettings.UserScope, "DgS", "DGP") set_settings(settings) yield - os.unlink(settings.fileName()) + try: + os.unlink(settings.fileName()) + except FileNotFoundError: + pass def qt_msg_handler(type_, context, message: str): diff --git a/tests/test_controller_observers.py b/tests/test_controller_observers.py new file mode 100644 index 0000000..ca38e78 --- /dev/null +++ b/tests/test_controller_observers.py @@ -0,0 +1,68 @@ +# -*- coding: utf-8 -*- +import weakref + +import pytest + +from dgp.core import StateAction +from dgp.core.models.flight import Flight +from dgp.core.controllers.controller_interfaces import AbstractController + + +@pytest.fixture +def mock_model(): + return Flight("TestFlt") + + +class Observer: + def __init__(self, control: AbstractController): + control.register_observer(self, self.on_update, StateAction.UPDATE) + control.register_observer(self, self.on_delete, StateAction.DELETE) + self.control = weakref.ref(control) + self.updated = False + self.deleted = False + + def on_update(self): + self.updated = True + + def on_delete(self): + self.deleted = True + + +# noinspection PyAbstractClass +class ClonedControl(AbstractController): + def __init__(self, *args, **kwargs): + super().__init__(*args, **kwargs) + self.updated = False + + def update(self): + self.updated = True + + +def test_observer_notify(mock_model): + abc = AbstractController(mock_model, project=None) + + assert not abc.is_active + observer = Observer(abc) + assert abc.is_active + + assert not observer.updated + assert not observer.deleted + + abc.update() + assert observer.updated + abc.delete() + assert observer.deleted + + +def test_controller_clone(mock_model): + abc = AbstractController(mock_model, project=None) + assert not abc.is_clone + + # AbstractController doesn't implement clone, so create our own adhoc clone + clone = ClonedControl(mock_model, None) + abc.register_clone(clone) + + assert clone.is_clone + assert not clone.updated + abc.update() + assert clone.updated diff --git a/tests/test_controllers.py b/tests/test_controllers.py index 696586d..8daa8d4 100644 --- a/tests/test_controllers.py +++ b/tests/test_controllers.py @@ -52,7 +52,7 @@ def test_attribute_proxy(tmpdir): def test_gravimeter_controller(tmpdir): prj = AirborneProjectController(AirborneProject(name="TestPrj", path=Path(tmpdir))) meter = Gravimeter('AT1A-Test') - meter_ctrl = GravimeterController(meter) + meter_ctrl = GravimeterController(meter, prj) assert isinstance(meter_ctrl, AbstractController) assert isinstance(meter_ctrl, IMeterController) diff --git a/tests/test_dataset_controller.py b/tests/test_dataset_controller.py index 9893690..d126c3d 100644 --- a/tests/test_dataset_controller.py +++ b/tests/test_dataset_controller.py @@ -124,33 +124,6 @@ def test_dataset_datafiles(project: AirborneProject): assert gps_file.group == gps_file_ctrl.group -# def test_dataset_reparenting(project: AirborneProject): -# # Test reassignment of DataSet to another Flight -# # Note: FlightController automatically adds empty DataSet if Flight has None -# prj_ctrl = AirborneProjectController(project) -# flt1ctrl = prj_ctrl.get_child(project.flights[0].uid) -# flt2ctrl = prj_ctrl.get_child(project.flights[1].uid) -# dsctrl = flt1ctrl.get_child(flt1ctrl.datamodel.datasets[0].uid) -# assert isinstance(dsctrl, DataSetController) -# -# assert 1 == len(flt1ctrl.datamodel.datasets) -# assert 1 == flt1ctrl.rowCount() -# -# assert 1 == len(flt2ctrl.datamodel.datasets) -# assert 1 == flt2ctrl.rowCount() -# -# assert flt1ctrl == dsctrl.get_parent() -# -# dsctrl.set_parent(flt2ctrl) -# assert 2 == flt2ctrl.rowCount() -# assert 0 == flt1ctrl.rowCount() -# assert flt2ctrl == dsctrl.get_parent() -# -# # DataSetController is recreated when added to new flight. -# assert not dsctrl == flt2ctrl.get_child(dsctrl.uid) -# assert flt1ctrl.get_child(dsctrl.uid) is None - - def test_dataset_data_api(project: AirborneProject, hdf5file, gravdata, gpsdata): prj_ctrl = AirborneProjectController(project) flt_ctrl = prj_ctrl.get_child(project.flights[0].uid) @@ -165,7 +138,7 @@ def test_dataset_data_api(project: AirborneProject, hdf5file, gravdata, gpsdata) HDF5Manager.save_data(gravdata, gravfile, hdf5file) HDF5Manager.save_data(gpsdata, gpsfile, hdf5file) - dataset_ctrl = DataSetController(dataset, flt_ctrl, project=prj_ctrl) + dataset_ctrl = DataSetController(dataset, prj_ctrl, flt_ctrl) gravity_frame = HDF5Manager.load_data(gravfile, hdf5file) assert gravity_frame.equals(dataset_ctrl.gravity) From 103d845890dccd66791e930fadd47f6c3cb13d70 Mon Sep 17 00:00:00 2001 From: Chris Bertinato Date: Tue, 18 Sep 2018 21:19:03 -0400 Subject: [PATCH 231/236] Fix for round-off error issue There are round-off errors in the pandas to_timedelta function. This interim fix until, which will remain until the issue gets addressed in the pandas code base, rounds datetimes to the nearest 1000 ns. This only works for times up to a precision of about 10 us. --- dgp/lib/time_utils.py | 23 +++++++++++++---------- 1 file changed, 13 insertions(+), 10 deletions(-) diff --git a/dgp/lib/time_utils.py b/dgp/lib/time_utils.py index a8367c3..4a2a91a 100644 --- a/dgp/lib/time_utils.py +++ b/dgp/lib/time_utils.py @@ -85,9 +85,13 @@ def convert_gps_time(gpsweek, gpsweekseconds, format='unix'): if format == 'unix': return timestamp + elif format == 'datetime': - return datetime(1970, 1, 1) + pd.to_timedelta(timestamp, unit='s') + result = datetime(1970, 1, 1) + pd.to_timedelta(timestamp, unit='s') + if not isinstance(result, datetime): + return result.dt.ceil('1000N') + return result def leap_seconds(**kwargs): """ @@ -160,12 +164,11 @@ def _get_leap_seconds(dt): def datenum_to_datetime(timestamp): - raise NotImplementedError() - - if isinstance(timestamp, pd.Series): - return (timestamp.astype(int).map(datetime.fromordinal) + - pd.to_timedelta(timestamp % 1, unit='D') - - pd.to_timedelta('366 days')) - else: - return (datetime.fromordinal(int(timestamp) - 366) + - timedelta(days=timestamp % 1)) + raise NotImplementedError + # if isinstance(timestamp, pd.Series): + # return (timestamp.astype(int).map(datetime.fromordinal) + + # pd.to_timedelta(timestamp % 1, unit='D') - + # pd.to_timedelta('366 days')) + # else: + # return (datetime.fromordinal(int(timestamp) - 366) + + # timedelta(days=timestamp % 1)) From 9535111a3903775626fa3409697d9a9cf703b982 Mon Sep 17 00:00:00 2001 From: Chris Bertinato Date: Tue, 18 Sep 2018 09:06:17 -0400 Subject: [PATCH 232/236] Change to allow individual tests to be run --- tests/conftest.py | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/tests/conftest.py b/tests/conftest.py index 1e3c0f4..464ed94 100644 --- a/tests/conftest.py +++ b/tests/conftest.py @@ -50,7 +50,8 @@ def shim_settings(): settings = QSettings(QSettings.IniFormat, QSettings.UserScope, "DgS", "DGP") set_settings(settings) yield - os.unlink(settings.fileName()) + if os.path.exists(settings.fileName()): + os.unlink(settings.fileName()) def qt_msg_handler(type_, context, message: str): From ae89f5406715a861443f9dd10898bd626409b837 Mon Sep 17 00:00:00 2001 From: Chris Bertinato Date: Tue, 18 Sep 2018 21:20:34 -0400 Subject: [PATCH 233/236] Added unit test for dti round-off issue --- tests/test_time_utils.py | 112 +++++++++++++++++++++------------------ 1 file changed, 61 insertions(+), 51 deletions(-) diff --git a/tests/test_time_utils.py b/tests/test_time_utils.py index ca50787..1d2b358 100644 --- a/tests/test_time_utils.py +++ b/tests/test_time_utils.py @@ -1,66 +1,76 @@ # coding: utf-8 -import os -import unittest +import pytest from datetime import datetime import pandas as pd from dgp.lib import time_utils as tu -class TestTimeUtils(unittest.TestCase): - def test_leap_seconds(self): - # TO DO: Test edge cases - gpsweek = 1959 - gpsweeksecond = 219698.000 - unixtime = 1500987698 # 2017-07-25 13:01:38+00:00 - dt = datetime.strptime('2017-07-25 13:01:38', '%Y-%m-%d %H:%M:%S') - expected1 = 18 - date1 = '08-07-2015' - date2 = '08/07/2015' - date3 = '08/07-2015' - expected2 = 17 +def test_leap_seconds(): + # TO DO: Test edge cases + gpsweek = 1959 + gpsweeksecond = 219698.000 + unixtime = 1500987698 # 2017-07-25 13:01:38+00:00 + dt = datetime.strptime('2017-07-25 13:01:38', '%Y-%m-%d %H:%M:%S') + expected1 = 18 - res_gps = tu.leap_seconds(week=gpsweek, seconds=gpsweeksecond) - res_unix = tu.leap_seconds(seconds=unixtime) - res_datetime = tu.leap_seconds(datetime=dt) - res_date1 = tu.leap_seconds(date=date1) - res_date2 = tu.leap_seconds(date=date2, dateformat='%m/%d/%Y') + date1 = '08-07-2015' + date2 = '08/07/2015' + date3 = '08/07-2015' + expected2 = 17 - self.assertEqual(expected1, res_gps) - self.assertEqual(expected1, res_unix) - self.assertEqual(expected1, res_datetime) - self.assertEqual(expected2, res_date1) - self.assertEqual(expected2, res_date2) + res_gps = tu.leap_seconds(week=gpsweek, seconds=gpsweeksecond) + res_unix = tu.leap_seconds(seconds=unixtime) + res_datetime = tu.leap_seconds(datetime=dt) + res_date1 = tu.leap_seconds(date=date1) + res_date2 = tu.leap_seconds(date=date2, dateformat='%m/%d/%Y') - with self.assertRaises(ValueError): - tu.leap_seconds(date=date3) + assert expected1 == res_gps + assert expected1 == res_unix + assert expected1 == res_datetime + assert expected2 == res_date1 + assert expected2 == res_date2 - with self.assertRaises(ValueError): - tu.leap_seconds(minutes=dt) + with pytest.raises(ValueError): + tu.leap_seconds(date=date3) - def test_convert_gps_time(self): - gpsweek = 1959 - gpsweeksecond = 219698.000 - result = 1500987698 # 2017-07-25 13:01:38+00:00 - test_res = tu.convert_gps_time(gpsweek, gpsweeksecond) - self.assertEqual(result, test_res) + with pytest.raises(ValueError): + tu.leap_seconds(minutes=dt) - def test_datetime_to_sow(self): - # test single input - dt = datetime(2017, 9, 7, hour=13) - expected = (1965, 392400) - given = tu.datetime_to_sow(dt) - self.assertEqual(expected, given) - # test iterable input - dt_series = pd.Series([dt]*20) - expected_iter = [expected]*20 - given_iter = tu.datetime_to_sow(dt_series) - self.assertEqual(expected_iter, given_iter) +def test_convert_gps_time(): + gpsweek = 1959 + gpsweeksecond = 219698.000 + result = 1500987698 # 2017-07-25 13:01:38+00:00 + test_res = tu.convert_gps_time(gpsweek, gpsweeksecond) + assert result == test_res - def test_datenum_to_datetime(self): - pass - # datenum = 736945.5416667824 - # given = tu.datenum_to_datetime(datenum) - # expected = datetime(2017, 9, 7, hour=13, microsecond=10000) - # self.assertEqual(expected, given) + +@pytest.mark.parametrize( + 'given_sow, expected_dt', [ + (312030.8, datetime(2017, 3, 22, 14, 40, 30, 800000)), + (312030.08, datetime(2017, 3, 22, 14, 40, 30, 80000)), + (312030.008, datetime(2017, 3, 22, 14, 40, 30, 8000)), + (312030.0008, datetime(2017, 3, 22, 14, 40, 30, 800)), + ] +) +def test_convert_gps_time_datetime(given_sow, expected_dt): + gpsweek = pd.Series([1941]) + gpsweeksecond = pd.Series([given_sow]) + result = pd.Series([expected_dt]) + test_res = tu.convert_gps_time(gpsweek, gpsweeksecond, format='datetime') + assert result.equals(test_res) + + +def test_datetime_to_sow(): + # test single input + dt = datetime(2017, 9, 7, hour=13) + expected = (1965, 392400) + given = tu.datetime_to_sow(dt) + assert expected == given + + # test iterable input + dt_series = pd.Series([dt]*20) + expected_iter = [expected]*20 + given_iter = tu.datetime_to_sow(dt_series) + assert expected_iter == given_iter From 971ff43f21e4d451a569993fa6e398f067adb497 Mon Sep 17 00:00:00 2001 From: Chris Bertinato Date: Wed, 19 Sep 2018 08:39:37 -0400 Subject: [PATCH 234/236] Alternative fix --- dgp/lib/time_utils.py | 6 +----- tests/test_time_utils.py | 2 +- 2 files changed, 2 insertions(+), 6 deletions(-) diff --git a/dgp/lib/time_utils.py b/dgp/lib/time_utils.py index 4a2a91a..ac8db7d 100644 --- a/dgp/lib/time_utils.py +++ b/dgp/lib/time_utils.py @@ -87,11 +87,7 @@ def convert_gps_time(gpsweek, gpsweekseconds, format='unix'): return timestamp elif format == 'datetime': - result = datetime(1970, 1, 1) + pd.to_timedelta(timestamp, unit='s') - - if not isinstance(result, datetime): - return result.dt.ceil('1000N') - return result + return datetime(1970, 1, 1) + pd.to_timedelta(timestamp * 1e9) def leap_seconds(**kwargs): """ diff --git a/tests/test_time_utils.py b/tests/test_time_utils.py index 1d2b358..bb513e3 100644 --- a/tests/test_time_utils.py +++ b/tests/test_time_utils.py @@ -51,7 +51,7 @@ def test_convert_gps_time(): (312030.8, datetime(2017, 3, 22, 14, 40, 30, 800000)), (312030.08, datetime(2017, 3, 22, 14, 40, 30, 80000)), (312030.008, datetime(2017, 3, 22, 14, 40, 30, 8000)), - (312030.0008, datetime(2017, 3, 22, 14, 40, 30, 800)), + (312030.0008, datetime(2017, 3, 22, 14, 40, 30, 800)) ] ) def test_convert_gps_time_datetime(given_sow, expected_dt): From a5c7f6c50abee334772ba28bc890a62c7a6159ee Mon Sep 17 00:00:00 2001 From: Zachery Brady Date: Fri, 21 Sep 2018 09:40:10 -0600 Subject: [PATCH 235/236] Annotate coverage skip on GUI action methods. Many GUI actions/methods to activate them are not easily tested, and would only be minorly useful to have tested anyways. pragma: no cover annotations have been added and will be added in future to these sorts of blocks/methods as I believe it is a waste of time to attempt to test many of them. --- dgp/core/controllers/datafile_controller.py | 7 +++++-- dgp/core/controllers/dataset_controller.py | 20 ++++++++++++-------- dgp/core/controllers/project_treemodel.py | 19 ++++++++++--------- 3 files changed, 27 insertions(+), 19 deletions(-) diff --git a/dgp/core/controllers/datafile_controller.py b/dgp/core/controllers/datafile_controller.py index 229be1b..4842597 100644 --- a/dgp/core/controllers/datafile_controller.py +++ b/dgp/core/controllers/datafile_controller.py @@ -33,6 +33,9 @@ def __init__(self, datafile: DataFile, project: AbstractController, def uid(self) -> OID: try: return super().uid + # This can occur when no underlying datafile is set + # TODO: This behavior should change in future, a better way to handle + # empty/unset data files is needed except AttributeError: return None @@ -71,13 +74,13 @@ def set_datafile(self, datafile: DataFile): elif self.entity.group is DataType.TRAJECTORY: self.setIcon(Icon.TRAJECTORY.icon()) - def _properties_dlg(self): + def _properties_dlg(self): # pragma: no cover if self.entity is None: return # TODO: Launch dialog to show datafile properties (name, path, data etc) data = HDF5Manager.load_data(self.entity, self.get_parent().hdfpath) self.log.info(f'\n{data.describe()}') - def _launch_explorer(self): + def _launch_explorer(self): # pragma: no cover if self.entity is not None: show_in_explorer(self.entity.source_path.parent) diff --git a/dgp/core/controllers/dataset_controller.py b/dgp/core/controllers/dataset_controller.py index f20826d..d874768 100644 --- a/dgp/core/controllers/dataset_controller.py +++ b/dgp/core/controllers/dataset_controller.py @@ -1,5 +1,6 @@ # -*- coding: utf-8 -*- import logging +import warnings import weakref from pathlib import Path from typing import List, Union, Set, cast @@ -64,7 +65,7 @@ def update(self): self.setToolTip(repr(self.entity)) def _action_properties(self): - pass + warnings.warn("Properties feature not yet implemented") class DataSetController(IDataSetController): @@ -141,7 +142,7 @@ def series_model(self) -> QStandardItemModel: return self._channel_model @property - def segment_model(self) -> QStandardItemModel: + def segment_model(self) -> QStandardItemModel: # pragma: no cover return self._segments.internal_model @property @@ -187,7 +188,10 @@ def dataframe(self) -> DataFrame: self._dataframe: DataFrame = concat([self.gravity, self.trajectory], axis=1, sort=True) return self._dataframe - def align(self): + def align(self): # pragma: no cover + """ + TODO: Utility of this is questionable, is it built into transform graphs? + """ if self.gravity.empty or self.trajectory.empty: _log.info(f'Gravity or Trajectory is empty, cannot align.') return @@ -251,14 +255,14 @@ def update(self): super().update() # Context Menu Handlers - def _action_set_name(self): + def _action_set_name(self): # pragma: no cover name = controller_helpers.get_input("Set DataSet Name", "Enter a new name:", self.get_attr('name'), parent=self.parent_widget) if name: self.set_attr('name', name) - def _action_set_sensor_dlg(self): + def _action_set_sensor_dlg(self): # pragma: no cover sensors = {} for i in range(self.project.meter_model.rowCount()): sensor = self.project.meter_model.item(i) @@ -275,8 +279,8 @@ def _action_set_sensor_dlg(self): self._sensor: GravimeterController = sensor.clone() self.appendRow(self._sensor) - def _action_delete(self, confirm: bool = True): + def _action_delete(self, confirm: bool = True): # pragma: no cover self.get_parent().remove_child(self.uid, confirm) - def _action_properties(self): - pass + def _action_properties(self): # pragma: no cover + warnings.warn("Properties action not yet implemented") diff --git a/dgp/core/controllers/project_treemodel.py b/dgp/core/controllers/project_treemodel.py index 5734ae2..b45857d 100644 --- a/dgp/core/controllers/project_treemodel.py +++ b/dgp/core/controllers/project_treemodel.py @@ -17,6 +17,13 @@ class ProjectTreeModel(QStandardItemModel): + activeProjectChanged = pyqtSignal(str) + projectMutated = pyqtSignal() + projectClosed = pyqtSignal(OID) + tabOpenRequested = pyqtSignal(object, object) + progressNotificationRequested = pyqtSignal(ProgressEvent) + sigDataChanged = pyqtSignal(object) + """Extension of QStandardItemModel which handles Project/Model specific events and defines signals for domain specific actions. @@ -41,13 +48,6 @@ class ProjectTreeModel(QStandardItemModel): ProgressEvent is passed defining the parameters for the progress bar """ - activeProjectChanged = pyqtSignal(str) - projectMutated = pyqtSignal() - projectClosed = pyqtSignal(OID) - tabOpenRequested = pyqtSignal(object, object) - progressNotificationRequested = pyqtSignal(ProgressEvent) - sigDataChanged = pyqtSignal(object) - def __init__(self, project: IAirborneController = None, parent: Optional[QObject] = None): super().__init__(parent) @@ -87,7 +87,8 @@ def projects(self) -> Generator[IAirborneController, None, None]: def add_project(self, child: IAirborneController): self.appendRow(child) - def remove_project(self, child: IAirborneController, confirm: bool = True) -> None: + def remove_project(self, child: IAirborneController, + confirm: bool = True) -> None: # pragma: no cover if confirm and not confirm_action("Confirm Project Close", f"Close Project " f"{child.get_attr('name')}?", @@ -147,5 +148,5 @@ def add_flight(self): # pragma: no cover return self._warn_no_active_project() self.active_project.add_flight_dlg() - def _warn_no_active_project(self): + def _warn_no_active_project(self): # pragma: no cover self.log.warning("No active projects.") From 50956940a20ef2bc793e9eadcf725622d670151c Mon Sep 17 00:00:00 2001 From: Zachery Brady Date: Fri, 21 Sep 2018 10:10:26 -0600 Subject: [PATCH 236/236] Rename AbstractController -> VirtualBaseController Virtual more correctly expresses the implementation of the base controller vs Abstract in terms of OOP principles. As the BaseController now provides some implementations for common methods. --- dgp/core/controllers/controller_interfaces.py | 42 +++++++++---------- dgp/core/controllers/datafile_controller.py | 6 +-- dgp/core/controllers/dataset_controller.py | 4 +- dgp/core/controllers/flight_controller.py | 2 +- dgp/core/controllers/project_treemodel.py | 4 +- dgp/gui/main.py | 4 +- dgp/gui/views/project_tree_view.py | 8 ++-- dgp/gui/workspaces/__init__.py | 4 +- dgp/gui/workspaces/base.py | 8 ++-- docs/source/core/controllers.rst | 4 +- docs/source/gui/workspaces.rst | 2 +- tests/test_controller_observers.py | 12 +++--- tests/test_controllers.py | 4 +- 13 files changed, 52 insertions(+), 52 deletions(-) diff --git a/dgp/core/controllers/controller_interfaces.py b/dgp/core/controllers/controller_interfaces.py index 6e492fa..6f61093 100644 --- a/dgp/core/controllers/controller_interfaces.py +++ b/dgp/core/controllers/controller_interfaces.py @@ -22,11 +22,11 @@ """ MenuBinding = Tuple[str, Tuple[Any, ...]] -MaybeChild = Union['AbstractController', None] +MaybeChild = Union['VirtualBaseController', None] -class AbstractController(QStandardItem, AttributeProxy): - """AbstractController provides a base interface for creating Controllers +class VirtualBaseController(QStandardItem, AttributeProxy): + """VirtualBaseController provides a base interface for creating Controllers .. versionadded:: 0.1.0 @@ -57,7 +57,7 @@ class AbstractController(QStandardItem, AttributeProxy): project : :class:`IAirborneController` A weak-reference is stored to the project controller for direct access by the controller via the :meth:`project` @property - parent : :class:`AbstractController`, optional + parent : :class:`VirtualBaseController`, optional A strong-reference is maintained to the parent controller object, accessible via the :meth:`get_parent` method *args @@ -81,8 +81,8 @@ def __init__(self, model, project, *args, parent=None, **kwargs): super().__init__(*args, **kwargs) self._model = model self._project = ref(project) if project is not None else None - self._parent: AbstractController = parent - self._clones: Set[AbstractController] = WeakSet() + self._parent: VirtualBaseController = parent + self._clones: Set[VirtualBaseController] = WeakSet() self.__cloned = False self._observers: Dict[StateAction, Dict] = {state: WeakKeyDictionary() for state in StateAction} @@ -125,7 +125,7 @@ def clones(self): Yields ------ - :class:`AbstractController` + :class:`VirtualBaseController` """ for clone in self._clones: @@ -140,7 +140,7 @@ def clone(self): Returns ------- - :class:`AbstractController` + :class:`VirtualBaseController` Clone of this controller with a shared reference to the entity """ @@ -162,12 +162,12 @@ def is_clone(self) -> bool: def is_clone(self, value: bool): self.__cloned = value - def register_clone(self, clone: 'AbstractController') -> None: + def register_clone(self, clone: 'VirtualBaseController') -> None: """Registers a cloned copy of this controller for updates Parameters ---------- - clone : :class:`AbstractController` + clone : :class:`VirtualBaseController` The cloned copy of the root controller to register """ @@ -201,7 +201,7 @@ def parent_widget(self) -> Union[QWidget, None]: except AttributeError: return None - def get_parent(self) -> 'AbstractController': + def get_parent(self) -> 'VirtualBaseController': """Get the parent controller of this controller Notes @@ -211,13 +211,13 @@ def get_parent(self) -> 'AbstractController': Returns ------- - :class:`AbstractController` or None + :class:`VirtualBaseController` or None Parent controller (if it exists) of this controller """ return self._parent - def set_parent(self, parent: 'AbstractController'): + def set_parent(self, parent: 'VirtualBaseController'): self._parent = parent def register_observer(self, observer, callback, state: StateAction) -> None: @@ -263,20 +263,20 @@ def update(self) -> None: clone.update() @property - def children(self) -> Generator['AbstractController', None, None]: + def children(self) -> Generator['VirtualBaseController', None, None]: """Yields children of this controller Override this property to provide generic access to controller children Yields ------ - :class:`AbstractController` + :class:`VirtualBaseController` Child controllers """ yield from () - def add_child(self, child) -> 'AbstractController': + def add_child(self, child) -> 'VirtualBaseController': """Add a child object to the controller, and its underlying data object. @@ -287,7 +287,7 @@ def add_child(self, child) -> 'AbstractController': Returns ------- - :class:`AbstractController` + :class:`VirtualBaseController` A reference to the controller object wrapping the added child Raises @@ -344,7 +344,7 @@ def __hash__(self): # noinspection PyAbstractClass -class IAirborneController(AbstractController): +class IAirborneController(VirtualBaseController): def add_flight_dlg(self): raise NotImplementedError @@ -374,17 +374,17 @@ def meter_model(self) -> QStandardItemModel: # noinspection PyAbstractClass -class IFlightController(AbstractController): +class IFlightController(VirtualBaseController): pass # noinspection PyAbstractClass -class IMeterController(AbstractController): +class IMeterController(VirtualBaseController): pass # noinspection PyAbstractClass -class IDataSetController(AbstractController): +class IDataSetController(VirtualBaseController): @property def hdfpath(self) -> Path: raise NotImplementedError diff --git a/dgp/core/controllers/datafile_controller.py b/dgp/core/controllers/datafile_controller.py index 4842597..41278bf 100644 --- a/dgp/core/controllers/datafile_controller.py +++ b/dgp/core/controllers/datafile_controller.py @@ -9,13 +9,13 @@ from dgp.core.hdf5_manager import HDF5Manager from dgp.core.oid import OID from dgp.core.types.enumerations import Icon -from dgp.core.controllers.controller_interfaces import IDataSetController, AbstractController +from dgp.core.controllers.controller_interfaces import IDataSetController, VirtualBaseController from dgp.core.controllers.controller_helpers import show_in_explorer from dgp.core.models.datafile import DataFile -class DataFileController(AbstractController): - def __init__(self, datafile: DataFile, project: AbstractController, +class DataFileController(VirtualBaseController): + def __init__(self, datafile: DataFile, project: VirtualBaseController, parent: IDataSetController = None): super().__init__(datafile, project, parent=parent) self.log = logging.getLogger(__name__) diff --git a/dgp/core/controllers/dataset_controller.py b/dgp/core/controllers/dataset_controller.py index d874768..425660f 100644 --- a/dgp/core/controllers/dataset_controller.py +++ b/dgp/core/controllers/dataset_controller.py @@ -20,14 +20,14 @@ from . import controller_helpers from .gravimeter_controller import GravimeterController -from .controller_interfaces import IFlightController, IDataSetController, AbstractController +from .controller_interfaces import IFlightController, IDataSetController, VirtualBaseController from .project_containers import ProjectFolder from .datafile_controller import DataFileController _log = logging.getLogger(__name__) -class DataSegmentController(AbstractController): +class DataSegmentController(VirtualBaseController): """Controller for :class:`DataSegment` Implements reference tracking feature allowing the mutation of segments diff --git a/dgp/core/controllers/flight_controller.py b/dgp/core/controllers/flight_controller.py index e0589db..7ab0f75 100644 --- a/dgp/core/controllers/flight_controller.py +++ b/dgp/core/controllers/flight_controller.py @@ -29,7 +29,7 @@ class FlightController(IFlightController): The default display behavior is to provide the Flights Name. A :obj:`QIcon` or string path to a resource can be provided for decoration. - FlightController implements the AttributeProxy mixin (via AbstractController), + FlightController implements the AttributeProxy mixin (via VirtualBaseController), which allows access to the underlying :class:`Flight` attributes via the get_attr and set_attr methods. diff --git a/dgp/core/controllers/project_treemodel.py b/dgp/core/controllers/project_treemodel.py index b45857d..83b68c5 100644 --- a/dgp/core/controllers/project_treemodel.py +++ b/dgp/core/controllers/project_treemodel.py @@ -9,7 +9,7 @@ from dgp.core.controllers.controller_interfaces import (IFlightController, IAirborneController, IDataSetController, - AbstractController) + VirtualBaseController) from dgp.core.controllers.controller_helpers import confirm_action from dgp.gui.utils import ProgressEvent @@ -107,7 +107,7 @@ def item_activated(self, index: QModelIndex): """Double-click handler for View events""" item = self.itemFromIndex(index) - if not isinstance(item, AbstractController): + if not isinstance(item, VirtualBaseController): return if isinstance(item, IAirborneController): diff --git a/dgp/gui/main.py b/dgp/gui/main.py index 634e92d..31e1ebe 100644 --- a/dgp/gui/main.py +++ b/dgp/gui/main.py @@ -10,7 +10,7 @@ from dgp import __about__ from dgp.core.oid import OID -from dgp.core.controllers.controller_interfaces import AbstractController +from dgp.core.controllers.controller_interfaces import VirtualBaseController from dgp.core.types.enumerations import Links, Icon from dgp.core.controllers.project_controllers import AirborneProjectController from dgp.core.controllers.project_treemodel import ProjectTreeModel @@ -260,7 +260,7 @@ def _update_recent_menu(self): for ref in recents: self.recent_menu.addAction(ref.name, lambda: self.open_project(Path(ref.path))) - def _tab_open_requested(self, uid: OID, controller: AbstractController): + def _tab_open_requested(self, uid: OID, controller: VirtualBaseController): """pyqtSlot(OID, IBaseController, str) Parameters diff --git a/dgp/gui/views/project_tree_view.py b/dgp/gui/views/project_tree_view.py index b1b65d9..242783b 100644 --- a/dgp/gui/views/project_tree_view.py +++ b/dgp/gui/views/project_tree_view.py @@ -7,7 +7,7 @@ from PyQt5.QtWidgets import QTreeView, QMenu from dgp.core.controllers.controller_interfaces import (IAirborneController, - AbstractController, + VirtualBaseController, MenuBinding) from dgp.core.controllers.project_treemodel import ProjectTreeModel @@ -67,7 +67,7 @@ def _on_click(self, index: QModelIndex): def _on_double_click(self, index: QModelIndex): """Selectively expand/collapse an item depending on its active state""" item = self.model().itemFromIndex(index) - if isinstance(item, AbstractController): + if isinstance(item, VirtualBaseController): if item.is_active: self.setExpanded(index, not self.isExpanded(index)) else: @@ -85,12 +85,12 @@ def _build_menu(self, menu: QMenu, bindings: List[MenuBinding]): def contextMenuEvent(self, event: QContextMenuEvent, *args, **kwargs): index = self.indexAt(event.pos()) - item: AbstractController = self.model().itemFromIndex(index) + item: VirtualBaseController = self.model().itemFromIndex(index) expanded = self.isExpanded(index) menu = QMenu(self) # bindings = getattr(item, 'menu_bindings', [])[:] # type: List - if isinstance(item, AbstractController): + if isinstance(item, VirtualBaseController): bindings = item.menu[:] else: bindings = [] diff --git a/dgp/gui/workspaces/__init__.py b/dgp/gui/workspaces/__init__.py index ac20436..255dd13 100644 --- a/dgp/gui/workspaces/__init__.py +++ b/dgp/gui/workspaces/__init__.py @@ -1,6 +1,6 @@ # -*- coding: utf-8 -*- -from dgp.core.controllers.controller_interfaces import AbstractController +from dgp.core.controllers.controller_interfaces import VirtualBaseController from .project import ProjectTab, AirborneProjectController from .flight import FlightTab, FlightController from .dataset import DataSetTab, DataSetController @@ -15,6 +15,6 @@ } -def tab_factory(controller: AbstractController): +def tab_factory(controller: VirtualBaseController): """Return the workspace tab constructor for the given controller type""" return _tabmap.get(controller.__class__, None) diff --git a/dgp/gui/workspaces/base.py b/dgp/gui/workspaces/base.py index 0ebd592..c62ad73 100644 --- a/dgp/gui/workspaces/base.py +++ b/dgp/gui/workspaces/base.py @@ -8,7 +8,7 @@ from PyQt5.QtWidgets import QWidget from dgp.core import OID, StateAction -from dgp.core.controllers.controller_interfaces import AbstractController +from dgp.core.controllers.controller_interfaces import VirtualBaseController from dgp.gui import settings __all__ = ['WorkspaceTab', 'SubTab'] @@ -18,7 +18,7 @@ class WorkspaceTab(QWidget): sigControllerUpdated = pyqtSignal() - def __init__(self, controller: AbstractController, *args, **kwargs): + def __init__(self, controller: VirtualBaseController, *args, **kwargs): super().__init__(*args, **kwargs) self.setAttribute(Qt.WA_DeleteOnClose, True) controller.register_observer(self, self.close, StateAction.DELETE) @@ -30,7 +30,7 @@ def uid(self) -> OID: return self.controller.uid @property - def controller(self) -> AbstractController: + def controller(self) -> VirtualBaseController: return self._controller() @property @@ -77,7 +77,7 @@ def __del__(self): class SubTab(QWidget): sigLoaded = pyqtSignal(object) - def __init__(self, control: AbstractController, *args, **kwargs): + def __init__(self, control: VirtualBaseController, *args, **kwargs): super().__init__(*args, **kwargs) self.setAttribute(Qt.WA_DeleteOnClose, True) control.register_observer(self, self.close, StateAction.DELETE) diff --git a/docs/source/core/controllers.rst b/docs/source/core/controllers.rst index 4b28c28..e40467b 100644 --- a/docs/source/core/controllers.rst +++ b/docs/source/core/controllers.rst @@ -29,7 +29,7 @@ for creating controllers such as the :class:`~.project_containers.ProjectFolder` which is a utility class for grouping items visually in the project's tree view. Controllers should at minimum subclass -:class:`~.controller_interfaces.AbstractController` which configures inheritance +:class:`~.controller_interfaces.VirtualBaseController` which configures inheritance for :class:`QStandardItem` and :class:`~.controller_mixins.AttributeProxy`. For more complex and widely used controllers, a dedicated interface should be created following the same naming scheme - particularly where circular @@ -87,7 +87,7 @@ type hinting within the development environment in such cases. .. py:module:: dgp.core.controllers.controller_interfaces -.. autoclass:: AbstractController +.. autoclass:: VirtualBaseController :show-inheritance: :undoc-members: diff --git a/docs/source/gui/workspaces.rst b/docs/source/gui/workspaces.rst index 6e072f0..f41dc98 100644 --- a/docs/source/gui/workspaces.rst +++ b/docs/source/gui/workspaces.rst @@ -13,7 +13,7 @@ application so that the user may easily navigate between multiple open workspaces. Each workspace defines its own custom widget(s) for interacting & manipulating -data associated with its underlying controller (:class:`AbstractController`). +data associated with its underlying controller (:class:`VirtualBaseController`). Workspaces may also contain sub-tabs, for example the :class:`DataSetTab` defines sub-tabs for viewing raw-data and selecting segments, and a tab for diff --git a/tests/test_controller_observers.py b/tests/test_controller_observers.py index ca38e78..43afd04 100644 --- a/tests/test_controller_observers.py +++ b/tests/test_controller_observers.py @@ -5,7 +5,7 @@ from dgp.core import StateAction from dgp.core.models.flight import Flight -from dgp.core.controllers.controller_interfaces import AbstractController +from dgp.core.controllers.controller_interfaces import VirtualBaseController @pytest.fixture @@ -14,7 +14,7 @@ def mock_model(): class Observer: - def __init__(self, control: AbstractController): + def __init__(self, control: VirtualBaseController): control.register_observer(self, self.on_update, StateAction.UPDATE) control.register_observer(self, self.on_delete, StateAction.DELETE) self.control = weakref.ref(control) @@ -29,7 +29,7 @@ def on_delete(self): # noinspection PyAbstractClass -class ClonedControl(AbstractController): +class ClonedControl(VirtualBaseController): def __init__(self, *args, **kwargs): super().__init__(*args, **kwargs) self.updated = False @@ -39,7 +39,7 @@ def update(self): def test_observer_notify(mock_model): - abc = AbstractController(mock_model, project=None) + abc = VirtualBaseController(mock_model, project=None) assert not abc.is_active observer = Observer(abc) @@ -55,10 +55,10 @@ def test_observer_notify(mock_model): def test_controller_clone(mock_model): - abc = AbstractController(mock_model, project=None) + abc = VirtualBaseController(mock_model, project=None) assert not abc.is_clone - # AbstractController doesn't implement clone, so create our own adhoc clone + # VirtualBaseController doesn't implement clone, so create our own adhoc clone clone = ClonedControl(mock_model, None) abc.register_clone(clone) diff --git a/tests/test_controllers.py b/tests/test_controllers.py index 8daa8d4..6b6f98a 100644 --- a/tests/test_controllers.py +++ b/tests/test_controllers.py @@ -16,7 +16,7 @@ from dgp.core.controllers.project_controllers import AirborneProjectController from dgp.core.models.project import AirborneProject from dgp.core.controllers.controller_mixins import AttributeProxy -from dgp.core.controllers.controller_interfaces import IMeterController, AbstractController +from dgp.core.controllers.controller_interfaces import IMeterController, VirtualBaseController from dgp.core.controllers.gravimeter_controller import GravimeterController from dgp.core.controllers.dataset_controller import (DataSetController, DataSegmentController) @@ -54,7 +54,7 @@ def test_gravimeter_controller(tmpdir): meter = Gravimeter('AT1A-Test') meter_ctrl = GravimeterController(meter, prj) - assert isinstance(meter_ctrl, AbstractController) + assert isinstance(meter_ctrl, VirtualBaseController) assert isinstance(meter_ctrl, IMeterController) assert isinstance(meter_ctrl, AttributeProxy)