development_test.yml

# This workflow will install Python dependencies, run tests and lint with a single version of Python
# For more information see: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions

name: Development tests

on:
  pull_request:

env:
  PROJECT_NAME: hipposeg  # the project name
  APP_DIR: project
  SOURCE_DIR: project  # the name of the main directory that contains the project code
  TEST_DIR: tests  # the name of the directory that contains the tests

jobs:

  build-and-test:

    runs-on: ubuntu-latest

    steps:
      - name: checkout
        uses: actions/checkout@v2

      - name: Build and tag image
        run: docker build -t $PROJECT_NAME:latest .

      - name: Setup flake8 annotations
        uses: rbialon/flake8-annotations@v1

      - name: Lint with flake8
        run: |
          # stop the build if there are Python syntax errors or undefined names
          docker run --mount type=bind,source=$(pwd),target=/$APP_DIR $PROJECT_NAME flake8 $SOURCE_DIR --count --select=E9,F63,F7,F82 --show-source --statistics
          # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide
          docker run --mount type=bind,source=$(pwd),target=/$APP_DIR $PROJECT_NAME flake8 $SOURCE_DIR --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics

      - name: Test with pytest
        run: |
          docker run --mount type=bind,source=$(pwd),target=/$APP_DIR  $PROJECT_NAME coverage run -m --source=$SOURCE_DIR pytest --junitxml=pytest.xml --cov-report=term-missing:skip-covered --cov=$SOURCE_DIR $TEST_DIR/ | tee pytest-coverage.txt

      - name: Pytest coverage comment
        id: coverageComment
        uses: MishaKav/pytest-coverage-comment@main
        with:
          pytest-coverage-path: ./pytest-coverage.txt
          junitxml-path: ./pytest.xml