diff --git a/README.md b/README.md index 8526a1e..aa62a17 100644 --- a/README.md +++ b/README.md @@ -1,6 +1,11 @@ # TSEBRA: Transcript Selector for BRAKER + +

+drawing +

+ ### Introduction -TSEBRA is a combiner tool that selects transcripts from gene predictions based on the support by extrisic evidence in form of introns and start/stop codons. It was developed to combine BRAKER1[1](#ref1) and BRAKER2[2](#ref2) predicitons to increase their accuracies. +[TSEBRA](https://doi.org/10.1186/s12859-021-04482-0) is a combiner tool that selects transcripts from gene predictions based on the support by extrisic evidence in form of introns and start/stop codons. It was developed to combine BRAKER1[1](#ref1) and BRAKER2[2](#ref2) predicitons to increase their accuracies. ## Prerequisites Python 3.5.2 or higher is required. @@ -8,21 +13,17 @@ Python 3.5.2 or higher is required. ## Installation Download TSEBRA: ```console -git clone https://github.com/LarsGab/TSEBRA -``` -Or download TSEBRA as submodule of BRAKER with: -```console -git clone --recurse-submodules https://github.com/Gaius-Augustus/BRAKER +git clone https://github.com/Gaius-Augustus/TSEBRA ``` ## Usage The main script is ```./bin/tsebra.py```. For usage information run ```./bin/tsebra.py --help```. ## Input Files -TSEBRA needs a list of gene prediciton files, a list of hintfiles and a configuration file as input. +TSEBRA takes a list of gene prediciton files, a list of hintfiles and a configuration file as mandatory input. -#### Gene Predictions -The gene prediction files needs to be in gtf format. This is the standard output format of a BRAKER or AUGUSTUS[3,](#ref3)[4](#ref4) gene prediciton. +#### Gene Predictions +The gene prediction files have to be in gtf format. This is the standard output format of a BRAKER or AUGUSTUS[3,](#ref3)[4](#ref4) gene prediciton. Example: ```console @@ -34,7 +35,7 @@ Example: ``` #### Hint Files -The hint files have to be in gff format, the last column must include an attribute for the source for the hint with 'src=' and can include the number of hints supporting the gene structure segment with 'mult='. This is the standard file format of the ```hintfiles.gff``` in a BRAKER working directory. +The hints files have to be in gff format, the last column must include an attribute for the source for the hint with 'src=' and can include the number of hints supporting the gene structure segment with 'mult='. This is the standard file format of the ```hintsfile.gff``` in a BRAKER working directory. Example: ```console @@ -46,31 +47,59 @@ Example: ``` #### Configuration File -The configuration file has to include three types of parameter: -1. The weight for each hint source. A weight is set to 1, if the weight for a source is not determined in the cfg file. -2. Required fraction of supported introns or supported start/stop-codons for a transcript. -3. Allowed difference between two overlapping transcripts for each feature type. +The configuration file has to include three different sets of parameter: +1. Weights for all sources of hints. The source of a hint is specified by the mandatory 'src=' attribute in the last column of the ```hintsfile.gff``` (see section 'Hint Files'). See section 'Transcript scores' in [TSEBRA](https://doi.org/10.1101/2021.06.07.447316) for more information on how these weigths are used. +A weight is set to 1, if the weight for a hint source is not specified in the configuration file. + + * *Notes on adjusting these parameters: Increase the weight of the hint sources that have the highest quality. For example, if the protein database includes only species that are remotely related to the target species, the hints produced by BRAKER2 might be less accurate than the RNA-seq evidence. Then, you should increase the weight of the source related to the RNA-seq hints.* + + +2. Required fractions of supported introns or supported start/stop-codons for a transcript. A transcript is not included in the TSEBRA result if the fractions of introns and start/stop codons supported by extrinsic evidence are lower than the thresholds. + + * *Notes on adjusting these parameters: The low evidence support thresholds for low evidence support are quite strict in the default configuration file. In this configuration, only transcripts with very high evidence support are allowed in the TSBERA result. In some cases, the default setting might be too strict, so that too many transcripts are filtered out. In this case, you should reduce the threshold of 'intron_support' (e.g., to 0.2).* + +3. Allowed difference between two overlapping transcripts for the six transcript scores. TSEBRA compares transcripts via their transcript scores and removes the one with the lower score if their difference exceeds the respective threshold. +Note that it is recommended to choose thesholds between [0,2], since the transcript scores are normalized to [-1,1]. + + * *Notes on adjusting these parameters: The higher the thresholds are set the less transcripts are filtered by the respective rule. With these thresholds one can adjust the effect of each filtering rule of TSEBRA. As these thresholds are increased, more transcripts are included in the TSEBRA result, in particular, more alternatively spliced isoforms per gene are contained in the result.* + + + +The name and the value of a parameter are separated by a space, and each parameter is listed in a different line. Example: ```console -# src weights -P 0.1 -E 10 -C 5 +# Weight for each hint source +# Values have to be >= 0 +P 1 +E 1 +C 1 M 1 -# Low evidence support -intron_support 0.75 +# Required fraction of supported introns +# or supported start/stop-codons for a transcript +# Values have to be in [0,1] +intron_support 0.8 stasto_support 1 -# Feature differences -e_1 0 +# Allowed difference for each feature +# Values have to be in [0,2] +e_1 0.0 e_2 0.5 -e_3 25 -e_4 10 +e_3 0.096 +e_4 0.02 +e_5 0.18 +e_6 0.18 +``` +Description of evidence sources in default BRAKER1 and BRAKER2 outputs: +``` +E = RNA-seq hints +M = manual hints, these are hints that are enforced during the prediction step of BRAKER, +C = protein hints from proteins with a 'high' spliced alignment score. +P = protein hints from proteins that have a 'good' spliced alignment score, + but that is lower than the score from the ones in 'C'. ``` - ## Use Case -The recommended and most common usage for TSEBRA is to combine the resulting ```braker.gtf``` files of a BRAKER1 and a BRAKER2 run using the hintsfile.gff from both working directories. However, TSEBRA can be applied to any number (>1) of gene predictions and hint files as long as they are in the correct format. +The recommended and most common usage for TSEBRA is to combine the resulting ```augustus.hints.gtf``` files of a BRAKER1 and a BRAKER2 run using the hintsfile.gff from both working directories. However, TSEBRA can be applied to any number (>1) of gene predictions and hint files as long as they are in the correct format. A common case might be that a user wants to annotate a novel genome with BRAKER and has: * a novel genome with repeats masked: ```genome.fasta.masked```, @@ -80,32 +109,75 @@ A common case might be that a user wants to annotate a novel genome with BRAKER 1. Run BRAKER1 and BRAKER2 for example with ```console ### BRAKER1 -braker.pl --genome=genome.fasta.masked --hints=rna_seq_hints.gff \ +braker.pl --genome=genome.fasta.masked --hints=rna_seq_hints.gff \ --softmasking --species=species_name --workingdir=braker1_out - ### BRAKER2 -braker.pl --genome=genome.fasta.masked --prot_seq=proteins.fa \ - --softmasking --species=species_name --epmode --prg=ph \ +braker.pl --genome=genome.fasta.masked --prot_seq=proteins.fa \ + --softmasking --species=species_name --epmode \ --workingdir=braker2_out ``` -2. Make sure that the gene and transcript IDs of the gene prediction files are in order (this step is optional) -```console -./bin/fix_gtf_ids.py --gtf braker1_out/braker.gtf --out braker1_fixed.gtf -./bin/fix_gtf_ids.py --gtf braker2_out/braker.gtf --out braker2_fixed.gtf -``` -3. Combine predicitons with TSEBRA +2. Combine predicitons with TSEBRA ```console -./bin/tsebra.py -g braker1_fixed.gtf,braker2_fixed.gtf -c default.cfg \ +./bin/tsebra.py -g braker1_out/augustus.hints.gtf,braker2_out/augustus.hints.gtf -c default.cfg \ -e braker1_out/hintsfile.gff,braker2_out/hintsfile.gff \ -o braker1+2_combined.gtf ``` The combined gene prediciton is ```braker1+2_combined.gtf```. ## Example -A small example is located at ```example/```. Run ```./example/run_prevco_example.sh``` to execute the example and to check if TSEBRA runs properly. +A small example is located at ```example/```. Run ```./example/run_prevco_example.sh``` to execute the example and to check if TSEBRA runs properly. + +## Enforcing a gene set +A gene set can be enforced in the TSEBRA output, i.e. all transcript are guaranteed to be included in the output, with the `--keep_gtf` option. The transcripts of enforced gene sets are still compared to all gene sets and used to evaluate them. +Example: + ```console +./bin/tsebra.py -g gene_set1,gene_set2 -c default.cfg \ + -k enforced_set1,enforced_set2 -e hintsfile1.gff,braker2_out/hintsfile2.gff \ + -o tsebra.gtf +``` + +## Filter single-exon genes out +In default mode, TSEBRA is conservative in filtering single exon genes out. In some cases BRAKER predicts a lot of false positive single exon genes. In these cases, it is recommended to run TSBERA using the `--filter_single_exon_genes`. In this mode, TSBERA filters additonally all single-exon genes out that have no support by a start or stop codon hint. + +## Print transcript scores +The transcript scores play a very improtant role in TSEBRA. These are used for pairwise comparison of all transcripts isoforms that have overlapping coding regions. You can print the scores as table to a file with the option `--score_tab /path/to/output/file.tab`. + +## Ignore Frame +By default, TSEBRA groups all transcript isoforms that have overlapping coding regions in the same open reading frame (phase column in gtf) to candidates of the same gene. However, in some cases, it might be desired to consider already all transcripts with overlapping conding regions (regardless of the reading frame) as candidates for a gene. In this case add the `--ignore_tx_phase` to the TSEBRA commmand. + +## Other scripts in the TSEBRA repository + +### Renaming transcripts from a TSEBRA output +The IDs of the transcripts and genes in the TSEBRA output can be renamed such that the gene and transcript ID match. +Genes and transcript are numbered consecutively and for example, the second transcript of gene "g12" has the ID "g12.t2". +If a prefix is set then it will be added before all IDs, for example, the transcript ID is "dmel_g12.t2" if the prefix is set to "dmel". +Additionally, a translation table can be produced that provides the mapping from old to new transcript IDs. + +Example for renaming ```tsebra_result.gtf```: +```console +./bin/rename_gtf.py --gtf tsebra_result.gtf --prefix dmel --translation_tab translation.tab --out tsebra_result_renamed.gtf +``` +The arguments ```--prefix``` and ```--translation_tab``` are optional. + +### Fixing the formatting issue of `braker.gtf` +A BRAKER run produces a second complete gene set named `braker.gtf`, besides the official output `augustus.hints.gtf`. The `braker.gtf` is the result of merging `augustus.hints.gtf` with some 'high-confidents' genes from the GeneMark prediction. However, the merging process leads to a formatting issue in `braker.gtf`. +A quick fix for this formatting issue is the script `fix_gtf_ids.py`, e.g.: +```console +./bin/fix_gtf_ids.py --gtf braker_out/braker.gtf --out braker1_fixed.gtf +``` +Take note that the `braker.gtf` and `fix_gtf_ids.py` haven't been tested sufficently and there is no guarantee that this gene set is superior to `augustus.hints.gtf`. + +### Getting the longest isoform of each gene loci from different gene sets +Combines multiple gene sets and reports the transcript with the longest coding region for each cluster of overlapping transcripts (one transcript per gene loci), e.g. +```console +./bin/get_longest_isoform.py --gtf gene_set1.gtf,gene_set2.gtf --out longest_insoforms.gtf +``` ## Licence -All source code, i.e. `bin/*.py` are under the Artistic License (see ). +All source code, i.e. `bin/*.py` are under the [Artistic License](bin/LICENSE.txt) (see ). + +## Citing TSEBRA +Gabriel, L., Hoff, K.J., Brůna, T. *et al.* TSEBRA: transcript selector for BRAKER. *BMC Bioinformatics* **22**, 566 (2021). https://doi.org/10.1186/s12859-021-04482-0 ## References [1] Hoff, Katharina J, Simone Lange, Alexandre Lomsadze, Mark Borodovsky, and Mario Stanke. 2015. “BRAKER1: Unsupervised Rna-Seq-Based Genome Annotation with Genemark-et and Augustus.” *Bioinformatics* 32 (5). 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UNLESS REQUIRED BY LAW, +NO COPYRIGHT HOLDER OR CONTRIBUTOR WILL BE LIABLE FOR ANY DIRECT, INDIRECT, +INCIDENTAL, OR CONSEQUENTIAL DAMAGES ARISING IN ANY WAY OUT OF THE USE OF THE +PACKAGE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. diff --git a/bin/evidence.py b/bin/evidence.py index 2959d1e..63dc9a8 100644 --- a/bin/evidence.py +++ b/bin/evidence.py @@ -36,12 +36,10 @@ def __init__(self, line): self.src = attribute.split('src=')[1].split(';')[0] except IndexError: raise AttributeMissing('Source of Hint is missing in line {}.'.format(line)) - - self.mult = '' + self.score = float(self.score) + self.mult = 1 if 'mult=' in attribute: - self.mult = attribute.split('mult=')[1].split(';')[0] - else: - self.mult= '1' + self.mult = int(attribute.split('mult=')[1].split(';')[0]) self.pri = '' if 'pri=' in attribute: @@ -77,7 +75,8 @@ def __init__(self, path): # dictonary containing evidence # self.hints[chromosom_id] = [Hints()] self.hints = {} - self.src = set() + # dictionary with self.src[src] = sum_of_all_mults_of_hints_from_src + self.src = {} self.read_file(path) def read_file(self, path): @@ -95,7 +94,9 @@ def read_file(self, path): if not new_hint.chr in self.hints.keys(): self.hints.update({new_hint.chr : []}) self.hints[new_hint.chr].append(new_hint) - self.src.add(new_hint.src) + if new_hint.src not in self.src: + self.src.update({new_hint.src : 0}) + self.src[new_hint.src] += new_hint.mult class Evidence: """ @@ -105,7 +106,7 @@ class Evidence: def __init__(self): # hint_keys[chr][start_end_type_strand][src] = multiplicity self.hint_keys = {} - self.src = set() + self.src = {} def add_hintfile(self, path_to_hintfile): """ @@ -113,7 +114,10 @@ def add_hintfile(self, path_to_hintfile): """ # read hintfile hintfile = Hintfile(path_to_hintfile) - self.src = self.src.union(hintfile.src) + for s in hintfile.src: + if s not in self.src: + self.src.update({s : 0}) + self.src[s] += hintfile.src[s] for chr in hintfile.hints.keys(): if chr not in self.hint_keys.keys(): self.hint_keys.update({chr : {}}) diff --git a/bin/features.py b/bin/features.py index a28ba61..eb6584d 100644 --- a/bin/features.py +++ b/bin/features.py @@ -4,6 +4,7 @@ # # features.py: Handles the features for a transcript # ============================================================== +import numpy as np class Node_features: """ @@ -11,7 +12,7 @@ class Node_features: Features are scores that characterize the support of the transcript by extrinsic evidence in different ways. """ - def __init__(self, tx, evi, hint_source_weight={'P' : 0.1, 'E' : 10, 'C' : 5, 'M' : 1}): + def __init__(self, tx, evi, hint_source_weight={'P' : 1, 'E' : 20, 'C' : 1, 'M' : 1}): """ Args: tx (Transcript): Transcript class object containing a transcript. @@ -19,6 +20,8 @@ def __init__(self, tx, evi, hint_source_weight={'P' : 0.1, 'E' : 10, 'C' : 5, ' hint_source_weight (dict(int)): Weights for each evidence source. """ self.sw = hint_source_weight + self.scores = [] + self.epsi = 1e-5 self.evi_list = {'intron' : [], 'start_codon' : [], 'stop_codon': []} self.numb_introns = 0 self.__init_hints__(tx, evi) @@ -29,7 +32,7 @@ def __init__(self, tx, evi, hint_source_weight={'P' : 0.1, 'E' : 10, 'C' : 5, ' # self.feature_vector[2] : sum of multiplicities of intron evidence for tx # self.feature_vector[3] : sum of multiplicities of start/stop codon evidence for tx # self.feature_vector[4] : 1 if tx is from anno_pref, 0 otherwise - self.feature_vector = self.create_feature_vec() + self.feature_vector = self.create_feature_vec() def __init_hints__(self, tx, evi): """ @@ -57,10 +60,10 @@ def create_feature_vec(self): (list(float)): List of feature scores. """ return [self.relative_support(['intron'], self.numb_introns), \ - self.relative_support(['start_codon', 'stop_codon'], 2.0), \ + self.relative_support(['start_codon', 'stop_codon'], 2.0), self.absolute_support(['intron']), \ self.absolute_support(['start_codon', 'stop_codon'])] - + def relative_support(self, gene_feature_types, abs_numb): """ Compute relative support of introns or start/stop-codons. @@ -95,11 +98,60 @@ def absolute_support(self, gene_feature_types): for hint in self.evi_list[type]: for src in hint.keys(): score += self.sw[src] * hint[src] - return score + #print(score) + return np.log(score + self.epsi) + + # currently not used + def mean_support(self, gene_feature_types, abs_numb): + """ + Compute absolute support of introns or start/stop-codons. + + Args: + gene_feature_types (str): Either introns or start/stop-codons + + Returns: + (float): Multiplicity*weight of supporting hints for gene_feature_types. + """ + score = 0.0 + if abs_numb > 0: + for type in gene_feature_types: + for hint in self.evi_list[type]: + for src in hint.keys(): + score += self.sw[src] * hint[src] + return np.log((score / abs_numb)+self.epsi) + else: + return np.log(self.epsi) + + # currently not used + def min_support(self, gene_feature_types, abs_numb): + """ + Compute absolute support of introns or start/stop-codons. + + Args: + gene_feature_types (str): Either introns or start/stop-codons + Returns: + (float): Multiplicity*weight of supporting hints for gene_feature_types. + """ + score = 0.0 + for type in gene_feature_types: + if len(self.evi_list[type]) < abs_numb: + return np.log(self.epsi) + if abs_numb > 0: + score = 10000000000000000000.0 + for type in gene_feature_types: + for hint in self.evi_list[type]: + new_score = 0 + for src in hint.keys(): + new_score += self.sw[src] * hint[src] + score = np.minimum(score, new_score) + return np.log(score+self.epsi) + else: + return np.log(self.epsi) + def get_features(self): """ Returns: (list(float)): List of feature scores. """ - return self.feature_vector + return self.feature_vector \ No newline at end of file diff --git a/bin/fix_gtf_ids.py b/bin/fix_gtf_ids.py index 3be6abf..891bd7d 100755 --- a/bin/fix_gtf_ids.py +++ b/bin/fix_gtf_ids.py @@ -32,6 +32,7 @@ def main(): if line[2] in ['gene', 'transcript']: continue id_prefix = line[0] + line[6] + id_prefix = id_prefix.replace(' ', '') transcript_id = line[8].split('transcript_id "')[1].split('";')[0] temp = line[8].split('transcript_id "') line[8] = '{}transcript_id "{}_{}";{}'.format(temp[0], id_prefix, transcript_id, '";'.join(temp[1].split('";')[1:])) diff --git a/bin/genome_anno.py b/bin/genome_anno.py index d51dc91..246337c 100644 --- a/bin/genome_anno.py +++ b/bin/genome_anno.py @@ -34,8 +34,10 @@ def __init__(self, id, gene_id, chr, source_anno, strand): self.source_anno = source_anno self.start = -1 self.end = -1 + self.cds_len = -1 self.cds_coords = {} self.strand = strand + self.source_method = '' def add_line(self, line): """ @@ -52,15 +54,52 @@ def add_line(self, line): if line[2] not in self.transcript_lines.keys(): self.transcript_lines.update({line[2] : []}) + self.source_method = line[1] + line[3] = int(line[3]) line[4] = int(line[4]) if self.start < 0 or line[3] < self.start: self.start = line[3] if self.end < 0 or line[4] > self.end: self.end = line[4] - + if self.gene_id == '' and not line[2] == 'transcript': + self.gene_id = line[8].split('gene_id "')[1].split('";')[0] self.transcript_lines[line[2]].append(line) + def set_gene_id(self, new_gene_id): + self.gene_id = new_gene_id + + def get_type_coords(self, type, frame=True): + """ + Get the coordinates and reading frame of the coding regions + Returns: + (dict(list(list(int)))): Dictionary with list of type coords for + each each frame phase (0,1,2) + """ + # returns dict of cds_coords[phase] = [start_coord, end_coord] of all CDS + if frame: + coords = {'0' : [], '1' : [], '2' : [], '.' : []} + else: + coords = [] + if type == 'CDS' and type not in self.transcript_lines.keys(): + type = 'exon' + if type not in self.transcript_lines.keys(): + return coords + for line in self.transcript_lines[type]: + if frame: + coords[line[7]].append([line[3], line[4]]) + else: + coords.append([line[3], line[4]]) + if frame: + for k in coords.keys(): + coords[k].sort(key=lambda c: (c[0],c[1])) + if type == 'CDS': + coords['0'] += coords['.'] + del coords['.'] + else: + coords.sort(key=lambda c: (c[0],c[1])) + return coords + def get_cds_coords(self): """ Get the coordinates and reading frame of the coding regions @@ -78,6 +117,8 @@ def get_cds_coords(self): key = 'exon' for line in self.transcript_lines[key]: self.cds_coords[line[7]].append([line[3], line[4]]) + for k in self.cds_coords.keys(): + self.cds_coords[k].sort(key=lambda c: (c[0],c[1])) return self.cds_coords def add_missing_lines(self): @@ -154,32 +195,54 @@ def find_start_stop_codon(self): """ Add start/stop codon lines. """ - if not 'transcript' in self.transcript_lines.keys(): - self.find_transcript() - tx = self.transcript_lines['transcript'][0] - - line1 = [self.chr, tx[1], '', tx[3], tx[3] + 2, \ - '.', tx[6], '.', "gene_id \"{}\"; transcript_id \"{}\";".format(\ - self.gene_id, self.id)] - line2 = [self.chr, tx[1], '', tx[4] - 2, tx[4], \ - '.', tx[6], '.', "gene_id \"{}\"; transcript_id \"{}\";".format(\ - self.gene_id, self.id)] - if tx[6] == '+': - line1[2] = 'start_codon' - line2[2] = 'stop_codon' - start = line1 - stop = line2 - else: - line1[2] = 'stop_codon' - line2[2] = 'start_codon' - stop = line1 - start = line2 + if not 'start_codon' in self.transcript_lines.keys(): - self.add_line(start) + self.transcript_lines.update({'start_codon' : []}) if not 'stop_codon' in self.transcript_lines.keys(): - self.add_line(stop) + self.transcript_lines.update({'stop_codon' : []}) + + + key = '' + if 'CDS' in self.transcript_lines.keys(): + key = 'CDS' + elif 'exon' in self.transcript_lines.keys(): + key = 'exon' + if key: + self.transcript_lines[key].sort(key = lambda x : x[3]) + tx = self.transcript_lines[key][0] + line1 = [self.chr, tx[1], '', tx[3], tx[3] + 2, \ + '.', self.strand, '0', "gene_id \"{}\"; transcript_id \"{}\";".format(\ + self.gene_id, self.id)] + tx = self.transcript_lines[key][-1] + line2 = [self.chr, tx[1], '', tx[4] - 2, tx[4], \ + '.', self.strand, '0', "gene_id \"{}\"; transcript_id \"{}\";".format(\ + self.gene_id, self.id)] + + fragmented_transcript = True + if tx[6] == '+': + line1[2] = 'start_codon' + line2[2] = 'stop_codon' + if self.transcript_lines[key][0][7] == 0: + fragmented_transcript = False + start = line1 + stop = line2 + else: + line1[2] = 'stop_codon' + line2[2] = 'start_codon' + if self.transcript_lines[key][-1][7] == 0: + fragmented_transcript = False + stop = line1 + start = line2 + if not 'start_codon' in self.transcript_lines.keys() and not fragmented_transcript: + if not fragmented_transcript: + self.add_line(start) + else: + self.transcript_lines.update({'start_codon' : []}) + if not 'stop_codon' in self.transcript_lines.keys(): + self.add_line(stop) + - def get_gtf(self, prefix='', new_gene_id=None): + def get_gtf(self, prefix=''): """ Creates gtf output for the transcript. @@ -187,22 +250,26 @@ def get_gtf(self, prefix='', new_gene_id=None): (list(list(str))): List of lines in gtf format as lists """ gtf = [] - if new_gene_id: - g_id = new_gene_id - else: - g_id = self.gene_id - if prefix: prefix += '.' + tx_line = [] for k in self.transcript_lines.keys(): for g in self.transcript_lines[k]: if k == 'transcript': - g[8] = prefix + self.id + tx_line = g + tx_line[8] = prefix + self.id + continue else: - g[8] = 'transcript_id \"{}\"; gene_id \"{}";'.format(\ - prefix + self.id, g_id) - gtf.append(g) - gtf = sorted(gtf, key=lambda g:g[3]) + g[8] = f'transcript_id \"{prefix + self.id}\"; gene_id \"{self.gene_id}";' + gtf.append(g) + + if not 'exon' in self.transcript_lines.keys(): + for g in self.transcript_lines['CDS']: + gtf.append(g[:2] + ['exon'] + g[3:]) + + gtf = sorted(gtf, key=lambda g: (g[3],g[4])) + if tx_line: + gtf = [tx_line] + gtf return gtf class Anno: @@ -220,6 +287,7 @@ def __init__(self, path, id): self.gene_gtf = {} self.transcripts = {} self.path = path + self.translation_tab = [] def addGtf(self): """ @@ -229,6 +297,7 @@ def addGtf(self): with open (self.path, 'r') as file: file_lines = csv.reader(file, delimiter='\t') for line in file_lines: + line = [l.strip(' ') for l in line] if line[0][0] == '#': continue line[3] = int(line[3]) @@ -239,10 +308,10 @@ def addGtf(self): if not gene_id in self.gene_gtf.keys(): self.gene_gtf.update({gene_id : line}) else: - sys.stderr.write('ERROR, gene_id not unique: {}'.format(gene_id)) + sys.stderr.write('ERROR, gene_id not unique: {}\n'.format(gene_id)) elif line[2] == 'transcript': transcript_id = line[8] - gene_id = transcript_id.split('.')[0] + gene_id = '' self.transcript_update(transcript_id, gene_id, line[0], line[6]) self.transcripts[transcript_id].add_line(line) else: @@ -312,33 +381,70 @@ def transcript_update(self, t_id, g_id, chr, strand): if not t_id in self.transcripts.keys(): self.transcripts.update({ t_id : Transcript(t_id, g_id, chr, self.id, strand)}) + def find_genes(self): + """ + Find all genes in the annotation and find the transcripts that + belong to each gene. Also, cretae a dict with the gtf lines for each gene. + """ + self.gene_gtf = {} + self.genes = {} + for tx in self.transcripts.values(): + if tx.gene_id in self.genes.keys(): + if not (tx.chr == self.gene_gtf[tx.gene_id][0] and \ + tx.strand == self.gene_gtf[tx.gene_id][6]): + sys.stderr.write('ERROR, gene_id not unique: {}.'.format(tx.gene_id)) + tx.gene_id = tx.gene_id + '.' + tx.chr + '.' + tx.strand + sys.stderr.write(' Adding new gene: {}\n'.format(tx.gene_id)) + else: + self.genes[tx.gene_id].append(tx.id) + self.gene_gtf[tx.gene_id][3] = min(self.gene_gtf[tx.gene_id][3], \ + tx.start) + self.gene_gtf[tx.gene_id][4] = max(self.gene_gtf[tx.gene_id][4], \ + tx.end) + continue + self.genes.update({tx.gene_id : [tx.id]}) + self.gene_gtf.update({tx.gene_id : [tx.chr, tx.source_method, 'gene', \ + tx.start, tx.end, '.', tx.strand, '.', tx.gene_id]}) + def get_gtf(self): """ - Get annotaion file as gtf list + Get annotaion file as gtf list. Returns: list(list(str)): Gtf file as list of lists """ gtf = [] - for k in self.genes.keys(): - if k in self.gene_gtf.keys(): - gtf.append(self.gene_gtf[k]) - #gtf += '\t'.join(map(str, self.gene_gtf[k])) + '\n' - for t_id in self.genes[k]: - gtf += self.transcripts[t_id].get_gtf() + gene_gtf = sorted(self.gene_gtf.values(), key=lambda g: (g[0],g[3],g[4])) + for gene in gene_gtf: + gtf.append(gene) + for tx_id in self.genes[gene[8]]: + gtf += self.transcripts[tx_id].get_gtf() return gtf - def get_subset_gtf(self, tx_list): + def add_transcripts(self, txs, id_prefix=''): """ - Get annotaion file for a subset of transcripts + Adds a dict of transcripts to the transcripts of the annotation. + Args: + dict(Transcript()): dictionary of Transcripts added to the annotation + """ + if not id_prefix: + self.transcripts.update({txs}) + else: + for tx in txs.values(): + tx.id = id_prefix + tx.id + self.transcripts.update({tx.id : tx}) + + def get_subset(self, tx_list): + """ + Get annotaion file for a subset of transcripts. Args: tx_list (list(str)): List of transcript IDs Returns: list(list(str)): Gtf file as list of lists """ - gtf = [] + tx_subset = {} for tx in tx_list: - gtf += self.transcripts[tx[0]].get_gtf(self.id, tx[1]) - return gtf + tx_subset.update({tx : self.transcripts[tx]}) + return tx_subset def change_id(self, new_id): """ @@ -346,7 +452,7 @@ def change_id(self, new_id): """ self.id = new_id for k in self.transcripts.keys(): - self.transcripts.source_anno = self.id + self.transcripts[k].source_anno = self.id def get_transcript_list(self): """ @@ -354,3 +460,50 @@ def get_transcript_list(self): (List(Transcript)): List of all transcripts. """ return list(self.transcripts.values()) + + def rename_tx_ids(self, prefix=''): + """ + Renames all tx and genes and returns translation table for old tx id to new tx id. + Args: + prefix (string): String added before each tx and gene ID. + Returns: + translation_tab (list(str, str)): Translation table for old tx id to new tx id. + """ + self.translation_tab = [] + gene_numb = 1 + old_gene_gtf = sorted(self.gene_gtf.values(), key=lambda g: (g[0],g[3],g[4])) + self.gene_gtf = {} + old_genes = self.genes + self.genes = {} + old_txs = self.transcripts + self.transcripts = {} + if prefix: + prefix += '_' + for gene in old_gene_gtf: + tx_numb = 1 + old_gene_id = gene[8] + new_gene_id = "{}g{}".format(prefix, gene_numb) + gene[8] = new_gene_id + self.genes.update({new_gene_id : []}) + self.gene_gtf.update({new_gene_id : gene}) + for old_tx_id in old_genes[old_gene_id]: + new_tx_id = "{}g{}.t{}".format(prefix, gene_numb, tx_numb) + self.transcripts.update({new_tx_id : old_txs[old_tx_id]}) + self.transcripts[new_tx_id].id = new_tx_id + self.transcripts[new_tx_id].gene_id = new_gene_id + self.genes[new_gene_id].append(new_tx_id) + tx_numb +=1 + self.translation_tab.append([new_tx_id, old_tx_id]) + gene_numb += 1 + return self.translation_tab + + def write_anno(self, out_path): + """ + Write Annotation in gtf format to out_path. + Args: + (str) : path to the output file + """ + with open(out_path, 'w+') as file: + out_writer = csv.writer(file, delimiter='\t', quotechar = "|", lineterminator = '\n') + for line in self.get_gtf(): + out_writer.writerow(line) \ No newline at end of file diff --git a/bin/get_longest_isoform.py b/bin/get_longest_isoform.py new file mode 100755 index 0000000..bac067a --- /dev/null +++ b/bin/get_longest_isoform.py @@ -0,0 +1,107 @@ +#!/usr/bin/env python3 +# ============================================================== +# author: Lars Gabriel +# +# get_longest_isoform.py: combines gene sets into one that +# consists only of the longest isoform from each gene loci +# ============================================================== +import argparse +import sys +import os +import csv + +class ConfigFileError(Exception): + pass + +class GeneSetMissing(Exception): + pass + +gtf = [] +anno = [] +hintfiles = [] +graph = None +out = '' +v = 0 +quiet = False +parameter = {'intron_support' : 0, 'stasto_support' : 0, \ + 'e_1' : 0, 'e_2' : 0, 'e_3' : 0, 'e_4' : 0} + +def main(): + from genome_anno import Anno + from overlap_graph import Graph + + global anno, graph, parameter + + args = parseCmd() + init(args) + + if v > 0: + print(gtf) + + # read gene prediciton files + c = 1 + for c, g in enumerate(gtf): + if not quiet: + sys.stderr.write(f'### READING GENE PREDICTION: [{g}]\n') + anno.append(Anno(g, f'anno{c+1}')) + anno[-1].addGtf() + anno[-1].norm_tx_format() + + # create graph with an edge for each unique transcript + # and an edge if two transcripts overlap + # two transcripts overlap if they share at least 3 adjacent protein coding nucleotides + graph = Graph(anno, para=parameter, verbose=v) + if not quiet: + sys.stderr.write('### BUILD OVERLAP GRAPH\n') + graph.build() + + combined_anno = Anno('', 'combined_annotation') + # for each gene locus, choose the transcript with longes coding sequence + if not quiet: + sys.stderr.write('### CHOOSE LONGEST ISOFORM FOR EACH GENE\n') + for i, comp in enumerate(graph.connected_components()): + tx_longest = sorted([graph.__tx_from_key__(n) for \ + n in comp], key=lambda t:t.get_cds_len())[-1] + tx_longest.set_gene_id(f'g_{i+1}') + tx_longest.id = f'{tx_longest.source_anno}.{tx_longest.id}' + combined_anno.transcripts.update({tx_longest.id : tx_longest}) + combined_anno.find_genes() + combined_anno.write_anno(out) + + if not quiet: + sys.stderr.write('### FINISHED\n\n') + sys.stderr.write('### The combined gene prediciton is located at {}.\n'.format(\ + out)) + +def init(args): + global gtf, out, v, quiet + if args.gtf: + gtf = args.gtf.split(',') + if args.out: + out = args.out + if args.verbose: + v = args.verbose + if args.quiet: + quiet = True + +def parseCmd(): + """Parse command line arguments + + Returns: + dictionary: Dictionary with arguments + """ + parser = argparse.ArgumentParser(description='Combine gene sets by choosing ' \ + 'the isoform with the longes coding sequence for each gene locus.') + parser.add_argument('-g', '--gtf', type=str, required=True, + help='List (separated by commas) of gene prediciton files in gtf.\n' \ + + '(e.g. gene_pred1.gtf,gene_pred2.gtf,gene_pred3.gtf)') + parser.add_argument('-o', '--out', type=str, required=True, + help='Outputfile for the combined gene prediciton in gtf.') + parser.add_argument('-q', '--quiet', action='store_true', + help='Quiet mode.') + parser.add_argument('-v', '--verbose', type=int, + help='') + return parser.parse_args() + +if __name__ == '__main__': + main() diff --git a/bin/overlap_graph.py b/bin/overlap_graph.py index 2ad01d7..d7780b7 100644 --- a/bin/overlap_graph.py +++ b/bin/overlap_graph.py @@ -8,6 +8,7 @@ # Compare nodes with the 'decision rule'. # ============================================================== from features import Node_features +import numpy as np class Edge: """ @@ -17,7 +18,7 @@ def __init__(self, n1_id, n2_id): """ Args: n1_id (str): Node ID from overlap graph - n2_id (str): Node ID from overlap graph + n2_id (str): Node ID from overlap graph """ self.node1 = n1_id self.node2 = n2_id @@ -35,6 +36,7 @@ def __init__(self, a_id, t_id): """ self.id = '{};{}'.format(a_id, t_id) self.transcript_id = t_id + self.is_in_ref_anno = 0.0 # ID of original annotation/gene prediction self.anno_id = a_id # unique ID for a cluster of overlapping transcripts @@ -45,12 +47,14 @@ def __init__(self, a_id, t_id): self.edge_to = {} self.feature_vector = [None] * 4 self.evi_support = False + self.enforce = False + self.gene_sets = set() class Graph: """ Overlap graph that can detect and filter overlapping transcripts. """ - def __init__(self, genome_anno_lst, para, verbose=0): + def __init__(self, genome_anno_lst, para, keep_tx=[], filter_single=False, ignore_phase=False, verbose=0): """ Args: genome_anno_lst (list(Anno)): List of Anno class objects @@ -66,10 +70,11 @@ def __init__(self, genome_anno_lst, para, verbose=0): # self.anno[annoid] = Anno() self.anno = {} - + # list of connected graph components + self.component_index = 0 self.component_list = [] - + # subset of all transcripts that weren't removed by the transcript comparison rule self.decided_graph = [] @@ -84,8 +89,15 @@ def __init__(self, genome_anno_lst, para, verbose=0): # parameters for decision rule self.para = para + # list of transcript set names that are enforced + self.keep_tx = keep_tx + # init annotations, check for duplicate ids self.init_anno(genome_anno_lst) + + # filter single exon genes + self.filter_single = filter_single + self.ignore_phase = ignore_phase def init_anno(self, genome_anno_lst): # make sure that the genome_anno ids are unique @@ -124,31 +136,36 @@ def build(self): # for every tx one element for start and one for end # this dict is used to check for overlapping transcripts tx_start_end = {} - # used to check for duplicate txs, list of ['start_end_strand'] + # check for duplicate txs, list of ['start_end_strand'] unique_tx_keys = {} for k in self.anno.keys(): for tx in self.anno[k].get_transcript_list(): + key = f'{tx.source_anno};{tx.id}' if tx.chr not in tx_start_end.keys(): tx_start_end.update({tx.chr : []}) unique_tx_keys.update({tx.chr : {}}) unique_key = '{}_{}_{}'.format(tx.start, tx.end, tx.strand) if unique_key in unique_tx_keys[tx.chr].keys(): check = False - coords = tx.get_cds_coords() + coords = tx.get_type_coords('CDS') for t in unique_tx_keys[tx.chr][unique_key]: - if coords == t.get_cds_coords(): + if coords == t.get_type_coords('CDS'): check = True break if check: + if tx.source_anno in self.keep_tx: + self.nodes[f'{t.source_anno};{t.id}'].enforce = True + self.nodes[f'{t.source_anno};{t.id}'].gene_sets.add(t.source_anno) continue else: unique_tx_keys[tx.chr].update({unique_key : []}) unique_tx_keys[tx.chr][unique_key].append(tx) - key = '{};{}'.format(tx.source_anno, \ - tx.id) self.nodes.update({key : Node(tx.source_anno, \ tx.id)}) + self.nodes[f'{tx.source_anno};{tx.id}'].gene_sets.add(tx.source_anno) + if tx.source_anno in self.keep_tx: + self.nodes[key].enforce = True tx_start_end[tx.chr].append([key, tx.start, 0]) tx_start_end[tx.chr].append([key, tx.end, 1]) @@ -186,18 +203,52 @@ def compare_tx_cds(self, tx1, tx2): """ if not tx1.strand == tx2.strand: return False - tx1_coords = tx1.get_cds_coords() - tx2_coords = tx2.get_cds_coords() - for phase in ['0', '1', '2']: - coords = [] - coords += tx1_coords[phase] - coords += tx2_coords[phase] - coords = sorted(coords, key=lambda c:c[0]) - for i in range(1, len(coords)): - if coords[i-1][1] - coords[i][0] > 1: + coords = [] + coords += [c + [int(phase)] for phase, coord_phase in tx1.get_type_coords('CDS').items() for c in coord_phase] + coords += [c + [int(phase)] for phase, coord_phase in tx2.get_type_coords('CDS').items() for c in coord_phase] + coords = sorted(coords, key = lambda x: x[0]) + + for i in range(1, len(coords)): + if coords[i-1][1] - coords[i][0] > 0: + if self.ignore_phase: + return True + elif tx1.strand == '+' and \ + abs(coords[i-1][0]-coords[i-1][2]-coords[i][0]+coords[i][2])%3 == 0: + return True + elif abs(coords[i-1][1]+coords[i-1][2]-coords[i][1]-coords[i][2])%3 == 0: return True return False + def add_reference_anno_label(self, ref_anno): + """ + Sets the value of is_in_ref_anno for each node to 1 + if the coding sequence of the corresponding transcript matches the + coding sequence of a transcript in the reference anno + + Args: + ref_anno (Anno): Anno() obeject of reference annotation + """ + def get_cds_keys(tx): + keys = [tx.chr, tx.strand] + [str(c[0]) + '_' + str(c[1]) \ + for c in tx.get_type_coords('CDS', frame=False)] + return keys + ref_anno_keys = [] + ref_anno_cds = [] + for tx in ref_anno.transcripts.values(): + cds_keys = get_cds_keys(tx) + ref_anno_cds += cds_keys + ref_anno_keys.append('_'.join(cds_keys)) + ref_anno_cds = set(ref_anno_cds) + ref_anno_keys = set(ref_anno_keys) + false_cds_keys = set([]) + correct_cds_keys = set([]) + numb_correct_tx = 0 + for n in self.nodes: + self.nodes[n].is_in_ref_anno = 0.0 + c_keys = get_cds_keys(self.__tx_from_key__(n)) + if '_'.join(c_keys) in ref_anno_keys: + self.nodes[n].is_in_ref_anno = 1.0 + def print_nodes(self): # prints all nodes of the graph (only used for development) for k in self.nodes.keys(): @@ -218,7 +269,7 @@ def connected_components(self): """ visited = [] self.component_list = [] - component_index = 0 + self.component_index = 0 for key in list(self.nodes.keys()): component = [key] if key in visited: @@ -233,9 +284,9 @@ def connected_components(self): not_visited += new_nodes component += new_nodes self.component_list.append(component) - component_index += 1 + self.component_index += 1 for node in component: - self.nodes[node].component_id = 'g_{}'.format(component_index) + self.nodes[node].component_id = 'g_{}'.format(self.component_index) return self.component_list def add_node_features(self, evi): @@ -245,17 +296,28 @@ def add_node_features(self, evi): Args: evi (Evidence): Evidence class object with all hints from any source. """ + all_features = [] for key in self.nodes.keys(): tx = self.__tx_from_key__(key) new_node_feature = Node_features(tx, evi, self.para) - self.nodes[key].feature_vector = new_node_feature.get_features() + self.nodes[key].feature_vector = np.array(new_node_feature.get_features()) + all_features.append(self.nodes[key].feature_vector) + std = np.std(np.array(all_features)[:,2:], axis=0) + mean = np.mean(np.array(all_features)[:,2:], axis=0) + for key in self.nodes.keys(): + tx = self.__tx_from_key__(key) + self.nodes[key].feature_vector[2:] -= mean + self.nodes[key].feature_vector[2:] /= std if self.nodes[key].feature_vector[0] >= self.para['intron_support'] \ or self.nodes[key].feature_vector[1] >= self.para['stasto_support']: self.nodes[key].evi_support = True - - def decide_edge(self, edge): - """ - Apply transcript comparison rule to two overlapping transcripts + if self.filter_single: + if len(tx.transcript_lines['intron']) == 0 and \ + self.nodes[key].feature_vector[1] == 0: + self.nodes[key].evi_support = False + + def decide_edge(self, edge, iter_range = range(0,6)): + """Apply transcript comparison rule to two overlapping transcripts Args: edge (Edge): edge between two transcripts @@ -263,22 +325,27 @@ def decide_edge(self, edge): Returns: (str): node ID of the transcript that is marked for removal """ + n1 = self.nodes[edge.node1] n2 = self.nodes[edge.node2] - for i in range(0,4): - diff = n1.feature_vector[i] - n2.feature_vector[i] - #print(diff) - if diff > self.para['e_{}'.format(i+1)]: - self.f[i].append(n2.id) - return n2.id - elif diff < (-1 * self.para['e_{}'.format(i+1)]): - self.f[i].append(n1.id) - return n1.id + if n1.evi_support and n2.evi_support: + tx1 = self.__tx_from_key__(n1.id) + tx2 = self.__tx_from_key__(n2.id) + iter_range = range(4) + if len(tx1.transcript_lines['intron']) == 0 or \ + len(tx2.transcript_lines['intron']) == 0: + iter_range = [1,3] + + for i in iter_range: + diff = n1.feature_vector[i] - n2.feature_vector[i] + if diff > self.para[f'e_{i+1}']: + return n2.id + elif diff < (-1 * self.para[f'e_{i+1}']): + return n1.id return None def decide_component(self, component): - """ - Applies transcript comparison rule to all transcripts of one component + """Applies transcript comparison rule to all transcripts of one component and returns the node IDs of all transcripts that are not removed by a comparison. @@ -294,8 +361,27 @@ def decide_component(self, component): for e_id in self.nodes[node_id].edge_to.values(): node_to_remove = self.edges[e_id].node_to_remove if node_to_remove: - if node_to_remove in result: + if node_to_remove in result and \ + not self.nodes[node_to_remove].enforce: result.remove(node_to_remove) + if node_id in result and not self.nodes[node_id].evi_support and \ + not self.nodes[node_id].enforce: + result.remove(node_id) + new_components = [[]] + visited = [] + for k, n_id in enumerate(result): + if n_id not in visited: + if k > 0: + self.component_index += 1 + not_visited = [n_id] + while not_visited: + n2_id = not_visited.pop() + visited.append(n2_id) + new_components[-1].append(n2_id) + not_visited += [n for n in self.nodes[n2_id].edge_to \ + if n in result and n not in not_visited + visited] + if k > 0: + self.nodes[n2_id].component_id = f'g_{self.component_index}' return result def decide_graph(self): @@ -311,7 +397,8 @@ def decide_graph(self): for component in self.component_list: if len(component) > 1: self.decided_graph += self.decide_component(component) - else: + elif self.nodes[component[0]].evi_support \ + or self.nodes[component[0]].enforce: self.decided_graph += component def get_decided_graph(self): @@ -325,7 +412,6 @@ def get_decided_graph(self): (dict(list(list(str))): Dictionary with transcript IDs and new gene IDs of all transcripts included in the combined gene prediciton for all input annotations - """ if not self.decided_graph: self.decide_graph() @@ -334,9 +420,9 @@ def get_decided_graph(self): for key in self.anno.keys(): result.update({key : []}) for node in self.decided_graph: - if self.nodes[node].evi_support: - anno_id, tx_id = node.split(';') - result[anno_id].append([tx_id, self.nodes[node].component_id]) + # if self.nodes[node].evi_support or self.nodes[node].enforce: + anno_id, tx_id = node.split(';') + result[anno_id].append([tx_id, self.nodes[node].component_id]) if self.v > 0: print('NODES: {}'.format(len(self.nodes.keys()))) diff --git a/bin/rename_gtf.py b/bin/rename_gtf.py new file mode 100755 index 0000000..b45a31b --- /dev/null +++ b/bin/rename_gtf.py @@ -0,0 +1,56 @@ +#!/usr/bin/env python3 +# ============================================================== +# author: Lars Gabriel +# +# Rename the transcripts and genes of a GTF file. +# ============================================================== +import argparse +import os +import csv +class FileNotFound(Exception): + pass + +def main(): + args = parseCmd() + from genome_anno import Anno + + args = parseCmd() + + if not os.path.exists(args.gtf): + raise FileNotFound('File not found: {}'.format(args.gtf)) + prefix = '' + if args.prefix: + prefix = args.prefix + + + anno = Anno(args.gtf, id='') + anno.addGtf() + anno.norm_tx_format() + anno.find_genes() + tx_tab = anno.rename_tx_ids(prefix) + anno.write_anno(args.out) + if args.translation_tab: + with open(args.translation_tab, 'w+') as file: + out_writer = csv.writer(file, delimiter='\t', quotechar = "|", lineterminator = '\n') + for line in tx_tab: + out_writer.writerow(line) + +def parseCmd(): + """Parse command line arguments + + Returns: + dictionary: Dictionary with arguments + """ + parser = argparse.ArgumentParser(description='Renames the transcripts and genes of a GTF file.') + parser.add_argument('--gtf', type=str, required=True, + help='Path to a gene prediciton file in GTF format, for example the output of TSEBRA.') + parser.add_argument('--prefix', type=str, + help='The string is added as a prefix to all transcript and gene IDs.') + parser.add_argument('--translation_tab', type=str, + help='Writes the translation table for old transcript IDs to new transcript IDs to the given file path.') + parser.add_argument('--out', type=str, required=True, + help='Path to the output file.') + return parser.parse_args() + +if __name__ == '__main__': + main() diff --git a/bin/tsebra.py b/bin/tsebra.py index 5481fbe..40da292 100755 --- a/bin/tsebra.py +++ b/bin/tsebra.py @@ -12,13 +12,20 @@ class ConfigFileError(Exception): pass +class GeneSetMissing(Exception): + pass + gtf = [] +enforce_tx = [] anno = [] hintfiles = [] graph = None out = '' v = 0 quiet = False +filter_sing_exon = False +ignore_tx_phase = False +scores_tab = '' parameter = {'intron_support' : 0, 'stasto_support' : 0, \ 'e_1' : 0, 'e_2' : 0, 'e_3' : 0, 'e_4' : 0} @@ -51,29 +58,40 @@ def main(): # read gene prediciton files c = 1 + keep = [] + for g in gtf: if not quiet: - sys.stderr.write('### READING GENE PREDICTION: [{}]\n'.format(g)) - anno.append(Anno(g, 'anno{}'.format(c))) + sys.stderr.write(f'### READING GENE PREDICTION: [{g}]\n') + anno.append(Anno(g, f'anno{c}')) anno[-1].addGtf() anno[-1].norm_tx_format() c += 1 - + for g in enforce_tx: + if not quiet: + sys.stderr.write(f'### READING GENE PREDICTION: [{g}]\n') + anno.append(Anno(g, f'anno{c}')) + anno[-1].addGtf() + anno[-1].norm_tx_format() + keep.append(f'anno{c}') + c += 1 + # read hintfiles evi = Evidence() for h in hintfiles: if not quiet: - sys.stderr.write('### READING EXTRINSIC EVIDENCE: [{}]\n'.format(h)) + sys.stderr.write(f'### READING EXTRINSIC EVIDENCE: [{h}]\n') evi.add_hintfile(h) for src in evi.src: if src not in parameter.keys(): - sys.stderr.write('ConfigError: No weight for src={}, it is set to 1\n'.format(src)) + sys.stderr.write(f'ConfigError: No weight for src={src}, it is set to 1\n') parameter.update({src : 1}) # create graph with an edge for each unique transcript # and an edge if two transcripts overlap # two transcripts overlap if they share at least 3 adjacent protein coding nucleotides - graph = Graph(anno, para=parameter, verbose=v) + + graph = Graph(anno, para=parameter, keep_tx=keep, filter_single=filter_sing_exon, ignore_phase=ignore_tx_phase, verbose=v) if not quiet: sys.stderr.write('### BUILD OVERLAP GRAPH\n') graph.build() @@ -96,13 +114,22 @@ def main(): # write result to output file if not quiet: sys.stderr.write('### WRITE COMBINED GENE PREDICTION\n') - combined_gtf = [] + combined_anno = Anno('', 'combined_annotation') for a in anno: - combined_gtf += a.get_subset_gtf(combined_prediction[a.id]) - with open(out, 'w+') as file: - out_writer = csv.writer(file, delimiter='\t', quotechar = "'") - for line in combined_gtf: - out_writer.writerow(line) + txs = a.get_subset([t[0] for t in combined_prediction[a.id]]) + for id, new_gene_id in combined_prediction[a.id]: + txs[id].set_gene_id(new_gene_id) + combined_anno.add_transcripts(txs, a.id + '.') + combined_anno.find_genes() + combined_anno.write_anno(out) + + if scores_tab: + if not quiet: + sys.stderr.write('### WRITE TRANSCRIPT SCORES\n') + tab_out = [['### TX_ID','intron_support', 'stasto_support', 's1', 's2', 's3', 's4']] + for node in graph.nodes.values(): + tab_out += [[node.id] + list(node.feature_vector)] + write_csv(scores_tab, tab_out) if not quiet: sys.stderr.write('### FINISHED\n\n') @@ -111,7 +138,7 @@ def main(): def set_parameter(cfg_file): """ - read parameters from the cfg file and store them in the dict parameter. + Read parameters from the cfg file and store them in parameter. Args: cfg_file (str): Path to configuration file. @@ -125,10 +152,27 @@ def set_parameter(cfg_file): parameter.update({line[0] : None}) parameter[line[0]] = float(line[1]) +def write_csv(out_path, tab): + """ + Write table to out_path. + Args: + (str) : path to the output file + (list) : table + """ + with open(out_path, 'w+') as file: + out_writer = csv.writer(file, delimiter='\t', quotechar = "|", lineterminator = '\n') + for line in tab: + out_writer.writerow(line) + def init(args): - global gtf, hintfiles, threads, hint_source_weight, out, v, quiet + global gtf, hintfiles, threads, hint_source_weight, out, enforce_tx, v, scores_tab, filter_sing_exon, ignore_tx_phase, quiet if args.gtf: gtf = args.gtf.split(',') + if args.keep_gtf: + enforce_tx = args.keep_gtf.split(',') + if not args.keep_gtf and not args.gtf: + raise GeneSetMissing('At least one gene set has to be provided '\ + + 'either with --gtf or --kepp_all!') if args.hintfiles: hintfiles = args.hintfiles.split(',') if args.cfg: @@ -136,6 +180,12 @@ def init(args): else: cfg_file = os.path.dirname(os.path.realpath(__file__)) + '/../config/default.cfg' set_parameter(cfg_file) + if args.score_tab: + scores_tab = args.score_tab + if args.filter_single_exon_genes: + filter_sing_exon = args.filter_single_exon_genes + if args.ignore_tx_phase: + ignore_tx_phase = args.ignore_tx_phase if args.out: out = args.out if args.verbose: @@ -152,15 +202,27 @@ def parseCmd(): parser = argparse.ArgumentParser(description='TSEBRA: Transcript Selector for BRAKER\n\n' \ + 'TSEBRA combines gene predictions by selecing ' \ + 'transcripts based on their extrisic evidence support.') - parser.add_argument('-g', '--gtf', type=str, required=True, + parser.add_argument('-g', '--gtf', type=str, help='List (separated by commas) of gene prediciton files in gtf.\n' \ + '(e.g. gene_pred1.gtf,gene_pred2.gtf,gene_pred3.gtf)') - parser.add_argument('-e', '--hintfiles', type=str, required=True, + parser.add_argument('-k', '--keep_gtf', type=str, + help='List (separated by commas) of gene prediciton files in gtf.\n' \ + + 'These gene sets are used the same way as other inputs, but TSEBRA '\ + + 'ensures that all transcripts from these gene sets are included in the output.') + parser.add_argument('-e', '--hintfiles', type=str, help='List (separated by commas) of files containing extrinsic evidence in gff.\n' \ + '(e.g. hintsfile1.gff,hintsfile2.gtf,3.gtf)') - parser.add_argument('-c', '--cfg', type=str, required=True, + parser.add_argument('-c', '--cfg', type=str, help='Configuration file that sets the parameter for TSEBRA. ' \ + 'You can find the recommended parameter at config/default.cfg.') + parser.add_argument('--filter_single_exon_genes', action='store_true', + help='Filter out all single-exon genes out that are not' \ + + ' supported by at least one start- or stop-codon hint.') + parser.add_argument('--ignore_tx_phase', action='store_true', + help='Ignore the phase of transcripts while detecting clusters ' \ + + 'of overlapping transcripts.') + parser.add_argument('-s', '--score_tab', type=str, + help='Prints the transcript scores as a table to the specified file.') parser.add_argument('-o', '--out', type=str, required=True, help='Outputfile for the combined gene prediciton in gtf.') parser.add_argument('-q', '--quiet', action='store_true', @@ -170,4 +232,4 @@ def parseCmd(): return parser.parse_args() if __name__ == '__main__': - main() + main() \ No newline at end of file diff --git a/config/braker3.cfg b/config/braker3.cfg new file mode 100644 index 0000000..d9696f0 --- /dev/null +++ b/config/braker3.cfg @@ -0,0 +1,16 @@ +# Weight for each hint source +# Values have to be >= 0 +P 1 +E 20 +C 1 +M 1 +# Required fraction of supported introns or supported start/stop-codons for a transcript +# Values have to be in [0,1] +intron_support 1.0 +stasto_support 2 +# Allowed difference for each feature +# Values have to be in [0,1] +e_1 0.1 +e_2 0.5 +e_3 0.05 +e_4 0.2 \ No newline at end of file diff --git a/config/default.cfg b/config/default.cfg index e851ec6..6f91c9e 100644 --- a/config/default.cfg +++ b/config/default.cfg @@ -1,17 +1,16 @@ # Weight for each hint source # Values have to be >= 0 -P 0.1 -E 10 -C 5 +P 1 +E 20 +C 1 M 1 # Required fraction of supported introns or supported start/stop-codons for a transcript # Values have to be in [0,1] -intron_support 0.75 -stasto_support 1 +intron_support 1.0 +stasto_support 2 # Allowed difference for each feature # Values have to be in [0,1] -e_1 0 +e_1 0.1 e_2 0.5 -# Values have to be >0 -e_3 25 -e_4 10 +e_3 0.05 +e_4 0.18 \ No newline at end of file diff --git a/config/keep_ab_initio.cfg b/config/keep_ab_initio.cfg new file mode 100644 index 0000000..588e6e7 --- /dev/null +++ b/config/keep_ab_initio.cfg @@ -0,0 +1,17 @@ +# Weight for each hint source +# Values have to be >= 0 +P 0.1 +E 10 +C 5 +M 1 +# Required fraction of supported introns or supported start/stop-codons for a transcript +# Values have to be in [0,1] +intron_support 0 +stasto_support 1 +# Allowed difference for each feature +# Values have to be in [0,1] +e_1 0.1 +e_2 0.5 +# Values have to be >0 +e_3 0.05 +e_4 0.18 \ No newline at end of file diff --git a/config/pref_braker1.cfg b/config/pref_braker1.cfg new file mode 100644 index 0000000..9b23b22 --- /dev/null +++ b/config/pref_braker1.cfg @@ -0,0 +1,17 @@ +# Weight for each hint source +# Values have to be >= 0 +P 0.1 +E 10000 +C 5 +M 1 +# Required fraction of supported introns or supported start/stop-codons for a transcript +# Values have to be in [0,1] +intron_support 0.25 +stasto_support 2 +# Allowed difference for each feature +# Values have to be in [0,1] +e_1 0.25 +e_2 1 +# Values have to be >0 +e_3 0.05 +e_4 0.18 diff --git a/docs/.gitkeep b/docs/.gitkeep new file mode 100644 index 0000000..8b13789 --- /dev/null +++ b/docs/.gitkeep @@ -0,0 +1 @@ + diff --git a/docs/TSEBRA_Logo.png b/docs/TSEBRA_Logo.png new file mode 100644 index 0000000..9ea4f37 Binary files /dev/null and b/docs/TSEBRA_Logo.png differ diff --git a/example/renamed.gtf b/example/renamed.gtf new file mode 100644 index 0000000..2af5934 --- /dev/null +++ b/example/renamed.gtf @@ -0,0 +1,784 @@ +22L AUGUSTUS gene 22092 22867 . - . transcript_id "dmel_g1.t1"; +2L AUGUSTUS transcript 22092 22867 . - . transcript_id "dmel_g1.t2"; +2L AUGUSTUS stop_codon 22092 22094 . - . transcript_id "dmel_g2.t1"; gene_id "dmel_g2"; +2L AUGUSTUS CDS 22092 22687 0.36 - 1 transcript_id "dmel_g2.t1"; gene_id "dmel_g2"; +2L AUGUSTUS exon 22092 22687 . - . transcript_id "dmel_g2.t1"; gene_id "dmel_g2"; +2L AUGUSTUS intron 22688 22742 0.42 - . transcript_id "dmel_g2.t1"; gene_id "dmel_g2"; +2L AUGUSTUS CDS 22743 22867 0.71 - 0 transcript_id "dmel_g2.t1"; gene_id "dmel_g2"; +2L AUGUSTUS exon 22743 22867 . - . transcript_id "dmel_g2.t1"; gene_id "dmel_g2"; +2L AUGUSTUS start_codon 22865 22867 . - 0 transcript_id "dmel_g2.t1"; gene_id "dmel_g2"; +22L AUGUSTUS gene 26521 40784 . - . g_2 +2L AUGUSTUS transcript 26521 40784 . - . transcript_id "dmel_g2.t2"; +2L AUGUSTUS stop_codon 26521 26523 . - 0 transcript_id "dmel_g3.t1"; gene_id "dmel_g3"; +2L AUGUSTUS CDS 26521 26688 1 - 0 transcript_id "dmel_g3.t1"; gene_id "dmel_g3"; +2L AUGUSTUS exon 26521 26688 . - . transcript_id "dmel_g3.t1"; gene_id "dmel_g3"; +2L AUGUSTUS intron 26689 26765 1 - . transcript_id "dmel_g3.t1"; gene_id "dmel_g3"; +2L AUGUSTUS CDS 26766 26964 1 - 1 transcript_id "dmel_g3.t1"; gene_id "dmel_g3"; +2L AUGUSTUS exon 26766 26964 . - . transcript_id "dmel_g3.t1"; gene_id "dmel_g3"; +2L AUGUSTUS intron 26965 27052 1 - . transcript_id "dmel_g3.t1"; gene_id "dmel_g3"; +2L AUGUSTUS CDS 27053 27490 1 - 1 transcript_id "dmel_g3.t1"; gene_id "dmel_g3"; +2L AUGUSTUS exon 27053 27490 . - . transcript_id "dmel_g3.t1"; gene_id "dmel_g3"; +2L AUGUSTUS intron 27491 28014 1 - . transcript_id "dmel_g3.t1"; gene_id "dmel_g3"; +2L AUGUSTUS CDS 28015 28240 1 - 2 transcript_id "dmel_g3.t1"; gene_id "dmel_g3"; +2L AUGUSTUS exon 28015 28240 . - . transcript_id "dmel_g3.t1"; gene_id "dmel_g3"; +2L AUGUSTUS intron 28241 28732 1 - . transcript_id "dmel_g3.t1"; gene_id "dmel_g3"; +2L AUGUSTUS CDS 28733 28926 1 - 1 transcript_id "dmel_g3.t1"; gene_id "dmel_g3"; +2L AUGUSTUS exon 28733 28926 . - . transcript_id "dmel_g3.t1"; gene_id "dmel_g3"; +2L AUGUSTUS intron 28927 28981 1 - . transcript_id "dmel_g3.t1"; gene_id "dmel_g3"; +2L AUGUSTUS CDS 28982 29068 1 - 1 transcript_id "dmel_g3.t1"; gene_id "dmel_g3"; +2L AUGUSTUS exon 28982 29068 . - . transcript_id "dmel_g3.t1"; gene_id "dmel_g3"; +2L AUGUSTUS intron 29069 30393 1 - . transcript_id "dmel_g3.t1"; gene_id "dmel_g3"; +2L AUGUSTUS CDS 30394 32043 0.3 - 1 transcript_id "dmel_g3.t1"; gene_id "dmel_g3"; +2L AUGUSTUS exon 30394 32043 . - . transcript_id "dmel_g3.t1"; gene_id "dmel_g3"; +2L AUGUSTUS intron 32044 32625 0.45 - . transcript_id "dmel_g3.t1"; gene_id "dmel_g3"; +2L AUGUSTUS CDS 32626 33270 0.51 - 1 transcript_id "dmel_g3.t1"; gene_id "dmel_g3"; +2L AUGUSTUS exon 32626 33270 . - . transcript_id "dmel_g3.t1"; gene_id "dmel_g3"; +2L AUGUSTUS intron 33271 33844 1 - . transcript_id "dmel_g3.t1"; gene_id "dmel_g3"; +2L AUGUSTUS CDS 33845 34288 1 - 1 transcript_id "dmel_g3.t1"; gene_id "dmel_g3"; +2L AUGUSTUS exon 33845 34288 . - . transcript_id "dmel_g3.t1"; gene_id "dmel_g3"; +2L AUGUSTUS intron 34289 34557 1 - . transcript_id "dmel_g3.t1"; gene_id "dmel_g3"; +2L AUGUSTUS CDS 34558 34604 1 - 0 transcript_id "dmel_g3.t1"; gene_id "dmel_g3"; +2L AUGUSTUS exon 34558 34604 . - . transcript_id "dmel_g3.t1"; gene_id "dmel_g3"; +2L AUGUSTUS intron 34605 34719 1 - . transcript_id "dmel_g3.t1"; gene_id "dmel_g3"; +2L AUGUSTUS CDS 34720 35212 1 - 1 transcript_id "dmel_g3.t1"; gene_id "dmel_g3"; +2L AUGUSTUS exon 34720 35212 . - . transcript_id "dmel_g3.t1"; gene_id "dmel_g3"; +2L AUGUSTUS intron 35213 35745 1 - . transcript_id "dmel_g3.t1"; gene_id "dmel_g3"; +2L AUGUSTUS CDS 35746 38298 0.91 - 1 transcript_id "dmel_g3.t1"; gene_id "dmel_g3"; +2L AUGUSTUS exon 35746 38298 . - . transcript_id "dmel_g3.t1"; gene_id "dmel_g3"; +2L AUGUSTUS intron 38299 38534 1 - . transcript_id "dmel_g3.t1"; gene_id "dmel_g3"; +2L AUGUSTUS CDS 38535 38731 1 - 0 transcript_id "dmel_g3.t1"; gene_id "dmel_g3"; +2L AUGUSTUS exon 38535 38731 . - . transcript_id "dmel_g3.t1"; gene_id "dmel_g3"; +2L AUGUSTUS intron 38732 39300 1 - . transcript_id "dmel_g3.t1"; gene_id "dmel_g3"; +2L AUGUSTUS CDS 39301 39857 1 - 2 transcript_id "dmel_g3.t1"; gene_id "dmel_g3"; +2L AUGUSTUS exon 39301 39857 . - . transcript_id "dmel_g3.t1"; gene_id "dmel_g3"; +2L AUGUSTUS intron 39858 40756 0.63 - . transcript_id "dmel_g3.t1"; gene_id "dmel_g3"; +2L AUGUSTUS CDS 40757 40784 0.63 - 0 transcript_id "dmel_g3.t1"; gene_id "dmel_g3"; +2L AUGUSTUS exon 40757 40784 . - . transcript_id "dmel_g3.t1"; gene_id "dmel_g3"; +2L AUGUSTUS start_codon 40782 40784 . - 0 transcript_id "dmel_g3.t1"; gene_id "dmel_g3"; +2L AUGUSTUS transcript 26521 40784 . - . transcript_id "dmel_g3.t2"; +2L AUGUSTUS stop_codon 26521 26523 . - 0 transcript_id "dmel_g3.t2"; gene_id "dmel_g3"; +2L AUGUSTUS CDS 26521 26688 1 - 0 transcript_id "dmel_g3.t2"; gene_id "dmel_g3"; +2L AUGUSTUS exon 26521 26688 . - . transcript_id "dmel_g3.t2"; gene_id "dmel_g3"; +2L AUGUSTUS intron 26689 26765 1 - . transcript_id "dmel_g3.t2"; gene_id "dmel_g3"; +2L AUGUSTUS CDS 26766 26964 1 - 1 transcript_id "dmel_g3.t2"; gene_id "dmel_g3"; +2L AUGUSTUS exon 26766 26964 . - . transcript_id "dmel_g3.t2"; gene_id "dmel_g3"; +2L AUGUSTUS intron 26965 27052 1 - . transcript_id "dmel_g3.t2"; gene_id "dmel_g3"; +2L AUGUSTUS CDS 27053 27490 1 - 1 transcript_id "dmel_g3.t2"; gene_id "dmel_g3"; +2L AUGUSTUS exon 27053 27490 . - . transcript_id "dmel_g3.t2"; gene_id "dmel_g3"; +2L AUGUSTUS intron 27491 28014 1 - . transcript_id "dmel_g3.t2"; gene_id "dmel_g3"; +2L AUGUSTUS CDS 28015 28240 0.99 - 2 transcript_id "dmel_g3.t2"; gene_id "dmel_g3"; +2L AUGUSTUS exon 28015 28240 . - . transcript_id "dmel_g3.t2"; gene_id "dmel_g3"; +2L AUGUSTUS intron 28241 28732 0.99 - . transcript_id "dmel_g3.t2"; gene_id "dmel_g3"; +2L AUGUSTUS CDS 28733 28926 1 - 1 transcript_id "dmel_g3.t2"; gene_id "dmel_g3"; +2L AUGUSTUS exon 28733 28926 . - . transcript_id "dmel_g3.t2"; gene_id "dmel_g3"; +2L AUGUSTUS intron 28927 28981 1 - . transcript_id "dmel_g3.t2"; gene_id "dmel_g3"; +2L AUGUSTUS CDS 28982 29068 1 - 1 transcript_id "dmel_g3.t2"; gene_id "dmel_g3"; +2L AUGUSTUS exon 28982 29068 . - . transcript_id "dmel_g3.t2"; gene_id "dmel_g3"; +2L AUGUSTUS intron 29069 30393 1 - . transcript_id "dmel_g3.t2"; gene_id "dmel_g3"; +2L AUGUSTUS CDS 30394 32043 0.33 - 1 transcript_id "dmel_g3.t2"; gene_id "dmel_g3"; +2L AUGUSTUS exon 30394 32043 . - . transcript_id "dmel_g3.t2"; gene_id "dmel_g3"; +2L AUGUSTUS intron 32044 32625 0.51 - . transcript_id "dmel_g3.t2"; gene_id "dmel_g3"; +2L AUGUSTUS CDS 32626 33270 0.57 - 1 transcript_id "dmel_g3.t2"; gene_id "dmel_g3"; +2L AUGUSTUS exon 32626 33270 . - . transcript_id "dmel_g3.t2"; gene_id "dmel_g3"; +2L AUGUSTUS intron 33271 33844 1 - . transcript_id "dmel_g3.t2"; gene_id "dmel_g3"; +2L AUGUSTUS CDS 33845 34288 1 - 1 transcript_id "dmel_g3.t2"; gene_id "dmel_g3"; +2L AUGUSTUS exon 33845 34288 . - . transcript_id "dmel_g3.t2"; gene_id "dmel_g3"; +2L AUGUSTUS intron 34289 34557 1 - . transcript_id "dmel_g3.t2"; gene_id "dmel_g3"; +2L AUGUSTUS CDS 34558 34604 1 - 0 transcript_id "dmel_g3.t2"; gene_id "dmel_g3"; +2L AUGUSTUS exon 34558 34604 . - . transcript_id "dmel_g3.t2"; gene_id "dmel_g3"; +2L AUGUSTUS intron 34605 34719 1 - . transcript_id "dmel_g3.t2"; gene_id "dmel_g3"; +2L AUGUSTUS CDS 34720 34912 1 - 1 transcript_id "dmel_g3.t2"; gene_id "dmel_g3"; +2L AUGUSTUS exon 34720 34912 . - . transcript_id "dmel_g3.t2"; gene_id "dmel_g3"; +2L AUGUSTUS intron 34913 35745 1 - . transcript_id "dmel_g3.t2"; gene_id "dmel_g3"; +2L AUGUSTUS CDS 35746 38298 0.95 - 1 transcript_id "dmel_g3.t2"; gene_id "dmel_g3"; +2L AUGUSTUS exon 35746 38298 . - . transcript_id "dmel_g3.t2"; gene_id "dmel_g3"; +2L AUGUSTUS intron 38299 38534 1 - . transcript_id "dmel_g3.t2"; gene_id "dmel_g3"; +2L AUGUSTUS CDS 38535 38731 1 - 0 transcript_id "dmel_g3.t2"; gene_id "dmel_g3"; +2L AUGUSTUS exon 38535 38731 . - . transcript_id "dmel_g3.t2"; gene_id "dmel_g3"; +2L AUGUSTUS intron 38732 39300 1 - . transcript_id "dmel_g3.t2"; gene_id "dmel_g3"; +2L AUGUSTUS CDS 39301 39857 0.98 - 2 transcript_id "dmel_g3.t2"; gene_id "dmel_g3"; +2L AUGUSTUS exon 39301 39857 . - . transcript_id "dmel_g3.t2"; gene_id "dmel_g3"; +2L AUGUSTUS intron 39858 40756 0.62 - . transcript_id "dmel_g3.t2"; gene_id "dmel_g3"; +2L AUGUSTUS CDS 40757 40784 0.63 - 0 transcript_id "dmel_g3.t2"; gene_id "dmel_g3"; +2L AUGUSTUS exon 40757 40784 . - . transcript_id "dmel_g3.t2"; gene_id "dmel_g3"; +2L AUGUSTUS start_codon 40782 40784 . - 0 transcript_id "dmel_g3.t2"; gene_id "dmel_g3"; +22L AUGUSTUS gene 67625 70895 . + . g_3 +2L AUGUSTUS transcript 67625 70895 . + . transcript_id "dmel_g3.t3"; +2L AUGUSTUS start_codon 67625 67627 . + 0 transcript_id "dmel_g4.t1"; gene_id "dmel_g4"; +2L AUGUSTUS CDS 67625 67762 1 + 0 transcript_id "dmel_g4.t1"; gene_id "dmel_g4"; +2L AUGUSTUS exon 67625 67762 . + . transcript_id "dmel_g4.t1"; gene_id "dmel_g4"; +2L AUGUSTUS intron 67763 67891 1 + . transcript_id "dmel_g4.t1"; gene_id "dmel_g4"; +2L AUGUSTUS CDS 67892 68023 1 + 0 transcript_id "dmel_g4.t1"; gene_id "dmel_g4"; +2L AUGUSTUS exon 67892 68023 . + . transcript_id "dmel_g4.t1"; gene_id "dmel_g4"; +2L AUGUSTUS intron 68024 68084 1 + . transcript_id "dmel_g4.t1"; gene_id "dmel_g4"; +2L AUGUSTUS CDS 68085 70549 0.91 + 0 transcript_id "dmel_g4.t1"; gene_id "dmel_g4"; +2L AUGUSTUS exon 68085 70549 . + . transcript_id "dmel_g4.t1"; gene_id "dmel_g4"; +2L AUGUSTUS intron 70550 70606 1 + . transcript_id "dmel_g4.t1"; gene_id "dmel_g4"; +2L AUGUSTUS CDS 70607 70895 1 + 1 transcript_id "dmel_g4.t1"; gene_id "dmel_g4"; +2L AUGUSTUS exon 70607 70895 . + . transcript_id "dmel_g4.t1"; gene_id "dmel_g4"; +2L AUGUSTUS stop_codon 70893 70895 . + 0 transcript_id "dmel_g4.t1"; gene_id "dmel_g4"; +22L AUGUSTUS gene 72792 77709 . + . g_4 +2L AUGUSTUS transcript 72792 77709 . + . transcript_id "dmel_g4.t2"; +2L AUGUSTUS start_codon 72792 72794 . + 0 transcript_id "dmel_g5.t1"; gene_id "dmel_g5"; +2L AUGUSTUS CDS 72792 72977 0.52 + 0 transcript_id "dmel_g5.t1"; gene_id "dmel_g5"; +2L AUGUSTUS exon 72792 72977 . + . transcript_id "dmel_g5.t1"; gene_id "dmel_g5"; +2L AUGUSTUS intron 72978 74902 1 + . transcript_id "dmel_g5.t1"; gene_id "dmel_g5"; +2L AUGUSTUS CDS 74903 75018 1 + 0 transcript_id "dmel_g5.t1"; gene_id "dmel_g5"; +2L AUGUSTUS exon 74903 75018 . + . transcript_id "dmel_g5.t1"; gene_id "dmel_g5"; +2L AUGUSTUS intron 75019 75077 1 + . transcript_id "dmel_g5.t1"; gene_id "dmel_g5"; +2L AUGUSTUS CDS 75078 75366 1 + 1 transcript_id "dmel_g5.t1"; gene_id "dmel_g5"; +2L AUGUSTUS exon 75078 75366 . + . transcript_id "dmel_g5.t1"; gene_id "dmel_g5"; +2L AUGUSTUS intron 75367 77480 0.99 + . transcript_id "dmel_g5.t1"; gene_id "dmel_g5"; +2L AUGUSTUS CDS 77481 77583 0.99 + 0 transcript_id "dmel_g5.t1"; gene_id "dmel_g5"; +2L AUGUSTUS exon 77481 77583 . + . transcript_id "dmel_g5.t1"; gene_id "dmel_g5"; +2L AUGUSTUS intron 77584 77641 0.99 + . transcript_id "dmel_g5.t1"; gene_id "dmel_g5"; +2L AUGUSTUS CDS 77642 77709 0.99 + 2 transcript_id "dmel_g5.t1"; gene_id "dmel_g5"; +2L AUGUSTUS exon 77642 77709 . + . transcript_id "dmel_g5.t1"; gene_id "dmel_g5"; +2L AUGUSTUS stop_codon 77707 77709 . + 0 transcript_id "dmel_g5.t1"; gene_id "dmel_g5"; +22L AUGUSTUS gene 83268 87107 . - . g_5 +2L AUGUSTUS transcript 83268 87026 . - . transcript_id "dmel_g5.t2"; +2L AUGUSTUS stop_codon 83268 83270 . - 0 transcript_id "dmel_g6.t1"; gene_id "dmel_g6"; +2L AUGUSTUS CDS 83268 84277 1 - 2 transcript_id "dmel_g6.t1"; gene_id "dmel_g6"; +2L AUGUSTUS exon 83268 84277 . - . transcript_id "dmel_g6.t1"; gene_id "dmel_g6"; +2L AUGUSTUS intron 84278 87019 1 - . transcript_id "dmel_g6.t1"; gene_id "dmel_g6"; +2L AUGUSTUS CDS 87020 87026 0.88 - 0 transcript_id "dmel_g6.t1"; gene_id "dmel_g6"; +2L AUGUSTUS exon 87020 87026 . - . transcript_id "dmel_g6.t1"; gene_id "dmel_g6"; +2L AUGUSTUS start_codon 87024 87026 . - 0 transcript_id "dmel_g6.t1"; gene_id "dmel_g6"; +2L AUGUSTUS transcript 83268 87107 . - . transcript_id "dmel_g6.t2"; +2L AUGUSTUS stop_codon 83268 83270 . - 0 transcript_id "dmel_g6.t2"; gene_id "dmel_g6"; +2L AUGUSTUS CDS 83268 84277 1 - 2 transcript_id "dmel_g6.t2"; gene_id "dmel_g6"; +2L AUGUSTUS exon 83268 84277 . - . transcript_id "dmel_g6.t2"; gene_id "dmel_g6"; +2L AUGUSTUS intron 84278 87019 1 - . transcript_id "dmel_g6.t2"; gene_id "dmel_g6"; +2L AUGUSTUS CDS 87020 87107 0.9 - 0 transcript_id "dmel_g6.t2"; gene_id "dmel_g6"; +2L AUGUSTUS exon 87020 87107 . - . transcript_id "dmel_g6.t2"; gene_id "dmel_g6"; +2L AUGUSTUS start_codon 87105 87107 . - 0 transcript_id "dmel_g6.t2"; gene_id "dmel_g6"; +22L AUGUSTUS gene 94852 97895 . + . g_6 +2L AUGUSTUS transcript 94852 97895 . + . transcript_id "dmel_g6.t3"; +2L AUGUSTUS start_codon 94852 94854 . + 0 transcript_id "dmel_g7.t1"; gene_id "dmel_g7"; +2L AUGUSTUS CDS 94852 94892 1 + 0 transcript_id "dmel_g7.t1"; gene_id "dmel_g7"; +2L AUGUSTUS exon 94852 94892 . + . transcript_id "dmel_g7.t1"; gene_id "dmel_g7"; +2L AUGUSTUS intron 94893 94988 1 + . transcript_id "dmel_g7.t1"; gene_id "dmel_g7"; +2L AUGUSTUS CDS 94989 95070 1 + 1 transcript_id "dmel_g7.t1"; gene_id "dmel_g7"; +2L AUGUSTUS exon 94989 95070 . + . transcript_id "dmel_g7.t1"; gene_id "dmel_g7"; +2L AUGUSTUS intron 95071 95131 1 + . transcript_id "dmel_g7.t1"; gene_id "dmel_g7"; +2L AUGUSTUS CDS 95132 95301 1 + 0 transcript_id "dmel_g7.t1"; gene_id "dmel_g7"; +2L AUGUSTUS exon 95132 95301 . + . transcript_id "dmel_g7.t1"; gene_id "dmel_g7"; +2L AUGUSTUS intron 95302 95353 1 + . transcript_id "dmel_g7.t1"; gene_id "dmel_g7"; +2L AUGUSTUS CDS 95354 95870 0.55 + 1 transcript_id "dmel_g7.t1"; gene_id "dmel_g7"; +2L AUGUSTUS exon 95354 95870 . + . transcript_id "dmel_g7.t1"; gene_id "dmel_g7"; +2L AUGUSTUS intron 95871 97806 0.55 + . transcript_id "dmel_g7.t1"; gene_id "dmel_g7"; +2L AUGUSTUS CDS 97807 97833 1 + 0 transcript_id "dmel_g7.t1"; gene_id "dmel_g7"; +2L AUGUSTUS exon 97807 97833 . + . transcript_id "dmel_g7.t1"; gene_id "dmel_g7"; +2L AUGUSTUS intron 97834 97883 1 + . transcript_id "dmel_g7.t1"; gene_id "dmel_g7"; +2L AUGUSTUS CDS 97884 97895 1 + 0 transcript_id "dmel_g7.t1"; gene_id "dmel_g7"; +2L AUGUSTUS exon 97884 97895 . + . transcript_id "dmel_g7.t1"; gene_id "dmel_g7"; +2L AUGUSTUS stop_codon 97893 97895 . + 0 transcript_id "dmel_g7.t1"; gene_id "dmel_g7"; +22L AUGUSTUS gene 102459 103763 . + . g_7 +2L AUGUSTUS transcript 102459 103763 . + . transcript_id "dmel_g7.t2"; +2L AUGUSTUS start_codon 102459 102461 . + 0 transcript_id "dmel_g8.t1"; gene_id "dmel_g8"; +2L AUGUSTUS CDS 102459 102906 1 + 0 transcript_id "dmel_g8.t1"; gene_id "dmel_g8"; +2L AUGUSTUS exon 102459 102906 . + . transcript_id "dmel_g8.t1"; gene_id "dmel_g8"; +2L AUGUSTUS intron 102907 103005 1 + . transcript_id "dmel_g8.t1"; gene_id "dmel_g8"; +2L AUGUSTUS CDS 103006 103434 1 + 2 transcript_id "dmel_g8.t1"; gene_id "dmel_g8"; +2L AUGUSTUS exon 103006 103434 . + . transcript_id "dmel_g8.t1"; gene_id "dmel_g8"; +2L AUGUSTUS intron 103435 103515 1 + . transcript_id "dmel_g8.t1"; gene_id "dmel_g8"; +2L AUGUSTUS CDS 103516 103763 1 + 2 transcript_id "dmel_g8.t1"; gene_id "dmel_g8"; +2L AUGUSTUS exon 103516 103763 . + . transcript_id "dmel_g8.t1"; gene_id "dmel_g8"; +2L AUGUSTUS stop_codon 103761 103763 . + 0 transcript_id "dmel_g8.t1"; gene_id "dmel_g8"; +22L AUGUSTUS gene 104473 106642 . - . g_8 +2L AUGUSTUS transcript 104473 106642 . - . transcript_id "dmel_g8.t2"; +2L AUGUSTUS stop_codon 104473 104475 . - 0 transcript_id "dmel_g9.t1"; gene_id "dmel_g9"; +2L AUGUSTUS CDS 104473 104947 1 - 1 transcript_id "dmel_g9.t1"; gene_id "dmel_g9"; +2L AUGUSTUS exon 104473 104947 . - . transcript_id "dmel_g9.t1"; gene_id "dmel_g9"; +2L AUGUSTUS intron 104948 105004 1 - . transcript_id "dmel_g9.t1"; gene_id "dmel_g9"; +2L AUGUSTUS CDS 105005 105336 0.97 - 0 transcript_id "dmel_g9.t1"; gene_id "dmel_g9"; +2L AUGUSTUS exon 105005 105336 . - . transcript_id "dmel_g9.t1"; gene_id "dmel_g9"; +2L AUGUSTUS intron 105337 105390 1 - . transcript_id "dmel_g9.t1"; gene_id "dmel_g9"; +2L AUGUSTUS CDS 105391 105455 1 - 2 transcript_id "dmel_g9.t1"; gene_id "dmel_g9"; +2L AUGUSTUS exon 105391 105455 . - . transcript_id "dmel_g9.t1"; gene_id "dmel_g9"; +2L AUGUSTUS intron 105456 105511 1 - . transcript_id "dmel_g9.t1"; gene_id "dmel_g9"; +2L AUGUSTUS CDS 105512 105915 1 - 1 transcript_id "dmel_g9.t1"; gene_id "dmel_g9"; +2L AUGUSTUS exon 105512 105915 . - . transcript_id "dmel_g9.t1"; gene_id "dmel_g9"; +2L AUGUSTUS intron 105916 105968 1 - . transcript_id "dmel_g9.t1"; gene_id "dmel_g9"; +2L AUGUSTUS CDS 105969 106642 1 - 0 transcript_id "dmel_g9.t1"; gene_id "dmel_g9"; +2L AUGUSTUS exon 105969 106642 . - . transcript_id "dmel_g9.t1"; gene_id "dmel_g9"; +2L AUGUSTUS start_codon 106640 106642 . - 0 transcript_id "dmel_g9.t1"; gene_id "dmel_g9"; +22L AUGUSTUS gene 108686 113542 . + . g_9 +2L AUGUSTUS transcript 108686 113542 . + . transcript_id "dmel_g9.t2"; +2L AUGUSTUS start_codon 108686 108688 . + 0 transcript_id "dmel_g10.t1"; gene_id "dmel_g10"; +2L AUGUSTUS CDS 108686 108809 1 + 0 transcript_id "dmel_g10.t1"; gene_id "dmel_g10"; +2L AUGUSTUS exon 108686 108809 . + . transcript_id "dmel_g10.t1"; gene_id "dmel_g10"; +2L AUGUSTUS intron 108810 110405 1 + . transcript_id "dmel_g10.t1"; gene_id "dmel_g10"; +2L AUGUSTUS CDS 110406 110483 1 + 2 transcript_id "dmel_g10.t1"; gene_id "dmel_g10"; +2L AUGUSTUS exon 110406 110483 . + . transcript_id "dmel_g10.t1"; gene_id "dmel_g10"; +2L AUGUSTUS intron 110484 110754 1 + . transcript_id "dmel_g10.t1"; gene_id "dmel_g10"; +2L AUGUSTUS CDS 110755 110877 1 + 2 transcript_id "dmel_g10.t1"; gene_id "dmel_g10"; +2L AUGUSTUS exon 110755 110877 . + . transcript_id "dmel_g10.t1"; gene_id "dmel_g10"; +2L AUGUSTUS intron 110878 111906 1 + . transcript_id "dmel_g10.t1"; gene_id "dmel_g10"; +2L AUGUSTUS CDS 111907 112019 1 + 2 transcript_id "dmel_g10.t1"; gene_id "dmel_g10"; +2L AUGUSTUS exon 111907 112019 . + . transcript_id "dmel_g10.t1"; gene_id "dmel_g10"; +2L AUGUSTUS intron 112020 112689 1 + . transcript_id "dmel_g10.t1"; gene_id "dmel_g10"; +2L AUGUSTUS CDS 112690 113369 1 + 0 transcript_id "dmel_g10.t1"; gene_id "dmel_g10"; +2L AUGUSTUS exon 112690 113369 . + . transcript_id "dmel_g10.t1"; gene_id "dmel_g10"; +2L AUGUSTUS intron 113370 113433 1 + . transcript_id "dmel_g10.t1"; gene_id "dmel_g10"; +2L AUGUSTUS CDS 113434 113542 1 + 1 transcript_id "dmel_g10.t1"; gene_id "dmel_g10"; +2L AUGUSTUS exon 113434 113542 . + . transcript_id "dmel_g10.t1"; gene_id "dmel_g10"; +2L AUGUSTUS stop_codon 113540 113542 . + 0 transcript_id "dmel_g10.t1"; gene_id "dmel_g10"; +22L AUGUSTUS gene 115713 116150 . - . g_42 +2L AUGUSTUS transcript 115713 116150 . - . transcript_id "dmel_g10.t2"; +2L AUGUSTUS stop_codon 115713 115715 . - 0 transcript_id "dmel_g11.t1"; gene_id "dmel_g11"; +2L AUGUSTUS CDS 115713 116150 1 - 0 transcript_id "dmel_g11.t1"; gene_id "dmel_g11"; +2L AUGUSTUS exon 115713 116150 . - . transcript_id "dmel_g11.t1"; gene_id "dmel_g11"; +2L AUGUSTUS start_codon 116148 116150 . - 0 transcript_id "dmel_g11.t1"; gene_id "dmel_g11"; +2L AUGUSTUS transcript 115713 116117 . - . transcript_id "dmel_g11.t2"; +2L AUGUSTUS stop_codon 115713 115715 . - 0 transcript_id "dmel_g11.t2"; gene_id "dmel_g11"; +2L AUGUSTUS CDS 115713 116117 0.63 - 0 transcript_id "dmel_g11.t2"; gene_id "dmel_g11"; +2L AUGUSTUS exon 115713 116117 . - . transcript_id "dmel_g11.t2"; gene_id "dmel_g11"; +2L AUGUSTUS start_codon 116115 116117 . - 0 transcript_id "dmel_g11.t2"; gene_id "dmel_g11"; +22L AUGUSTUS gene 117331 120032 . - . g_10 +2L AUGUSTUS transcript 117331 120032 . - . transcript_id "dmel_g11.t3"; +2L AUGUSTUS stop_codon 117331 117333 . - 0 transcript_id "dmel_g12.t1"; gene_id "dmel_g12"; +2L AUGUSTUS CDS 117331 117759 1 - 0 transcript_id "dmel_g12.t1"; gene_id "dmel_g12"; +2L AUGUSTUS exon 117331 117759 . - . transcript_id "dmel_g12.t1"; gene_id "dmel_g12"; +2L AUGUSTUS intron 117760 117819 1 - . transcript_id "dmel_g12.t1"; gene_id "dmel_g12"; +2L AUGUSTUS CDS 117820 118076 1 - 2 transcript_id "dmel_g12.t1"; gene_id "dmel_g12"; +2L AUGUSTUS exon 117820 118076 . - . transcript_id "dmel_g12.t1"; gene_id "dmel_g12"; +2L AUGUSTUS intron 118077 118135 1 - . transcript_id "dmel_g12.t1"; gene_id "dmel_g12"; +2L AUGUSTUS CDS 118136 118304 1 - 0 transcript_id "dmel_g12.t1"; gene_id "dmel_g12"; +2L AUGUSTUS exon 118136 118304 . - . transcript_id "dmel_g12.t1"; gene_id "dmel_g12"; +2L AUGUSTUS intron 118305 118360 1 - . transcript_id "dmel_g12.t1"; gene_id "dmel_g12"; +2L AUGUSTUS CDS 118361 118874 1 - 1 transcript_id "dmel_g12.t1"; gene_id "dmel_g12"; +2L AUGUSTUS exon 118361 118874 . - . transcript_id "dmel_g12.t1"; gene_id "dmel_g12"; +2L AUGUSTUS intron 118875 118930 1 - . transcript_id "dmel_g12.t1"; gene_id "dmel_g12"; +2L AUGUSTUS CDS 118931 119076 1 - 0 transcript_id "dmel_g12.t1"; gene_id "dmel_g12"; +2L AUGUSTUS exon 118931 119076 . - . transcript_id "dmel_g12.t1"; gene_id "dmel_g12"; +2L AUGUSTUS intron 119077 119133 1 - . transcript_id "dmel_g12.t1"; gene_id "dmel_g12"; +2L AUGUSTUS CDS 119134 119235 1 - 0 transcript_id "dmel_g12.t1"; gene_id "dmel_g12"; +2L AUGUSTUS exon 119134 119235 . - . transcript_id "dmel_g12.t1"; gene_id "dmel_g12"; +2L AUGUSTUS intron 119236 119287 1 - . transcript_id "dmel_g12.t1"; gene_id "dmel_g12"; +2L AUGUSTUS CDS 119288 119375 1 - 1 transcript_id "dmel_g12.t1"; gene_id "dmel_g12"; +2L AUGUSTUS exon 119288 119375 . - . transcript_id "dmel_g12.t1"; gene_id "dmel_g12"; +2L AUGUSTUS intron 119376 119430 1 - . transcript_id "dmel_g12.t1"; gene_id "dmel_g12"; +2L AUGUSTUS CDS 119431 119554 1 - 2 transcript_id "dmel_g12.t1"; gene_id "dmel_g12"; +2L AUGUSTUS exon 119431 119554 . - . transcript_id "dmel_g12.t1"; gene_id "dmel_g12"; +2L AUGUSTUS intron 119555 119827 1 - . transcript_id "dmel_g12.t1"; gene_id "dmel_g12"; +2L AUGUSTUS CDS 119828 120032 1 - 0 transcript_id "dmel_g12.t1"; gene_id "dmel_g12"; +2L AUGUSTUS exon 119828 120032 . - . transcript_id "dmel_g12.t1"; gene_id "dmel_g12"; +2L AUGUSTUS start_codon 120030 120032 . - 0 transcript_id "dmel_g12.t1"; gene_id "dmel_g12"; +22L AUGUSTUS gene 123129 128983 . - . g_11 +2L AUGUSTUS transcript 123129 128983 . - . transcript_id "dmel_g12.t2"; +2L AUGUSTUS stop_codon 123129 123131 . - 0 transcript_id "dmel_g13.t1"; gene_id "dmel_g13"; +2L AUGUSTUS CDS 123129 123629 1 - 0 transcript_id "dmel_g13.t1"; gene_id "dmel_g13"; +2L AUGUSTUS exon 123129 123629 . - . transcript_id "dmel_g13.t1"; gene_id "dmel_g13"; +2L AUGUSTUS intron 123630 123693 1 - . transcript_id "dmel_g13.t1"; gene_id "dmel_g13"; +2L AUGUSTUS CDS 123694 123794 1 - 2 transcript_id "dmel_g13.t1"; gene_id "dmel_g13"; +2L AUGUSTUS exon 123694 123794 . - . transcript_id "dmel_g13.t1"; gene_id "dmel_g13"; +2L AUGUSTUS intron 123795 123855 1 - . transcript_id "dmel_g13.t1"; gene_id "dmel_g13"; +2L AUGUSTUS CDS 123856 124024 1 - 0 transcript_id "dmel_g13.t1"; gene_id "dmel_g13"; +2L AUGUSTUS exon 123856 124024 . - . transcript_id "dmel_g13.t1"; gene_id "dmel_g13"; +2L AUGUSTUS intron 124025 124086 1 - . transcript_id "dmel_g13.t1"; gene_id "dmel_g13"; +2L AUGUSTUS CDS 124087 124920 1 - 0 transcript_id "dmel_g13.t1"; gene_id "dmel_g13"; +2L AUGUSTUS exon 124087 124920 . - . transcript_id "dmel_g13.t1"; gene_id "dmel_g13"; +2L AUGUSTUS intron 124921 125076 1 - . transcript_id "dmel_g13.t1"; gene_id "dmel_g13"; +2L AUGUSTUS CDS 125077 125266 1 - 1 transcript_id "dmel_g13.t1"; gene_id "dmel_g13"; +2L AUGUSTUS exon 125077 125266 . - . transcript_id "dmel_g13.t1"; gene_id "dmel_g13"; +2L AUGUSTUS intron 125267 126109 1 - . transcript_id "dmel_g13.t1"; gene_id "dmel_g13"; +2L AUGUSTUS CDS 126110 126227 1 - 2 transcript_id "dmel_g13.t1"; gene_id "dmel_g13"; +2L AUGUSTUS exon 126110 126227 . - . transcript_id "dmel_g13.t1"; gene_id "dmel_g13"; +2L AUGUSTUS intron 126228 128799 1 - . transcript_id "dmel_g13.t1"; gene_id "dmel_g13"; +2L AUGUSTUS CDS 128800 128983 1 - 0 transcript_id "dmel_g13.t1"; gene_id "dmel_g13"; +2L AUGUSTUS exon 128800 128983 . - . transcript_id "dmel_g13.t1"; gene_id "dmel_g13"; +2L AUGUSTUS start_codon 128981 128983 . - 0 transcript_id "dmel_g13.t1"; gene_id "dmel_g13"; +22L AUGUSTUS gene 132483 133682 . + . g_43 +2L AUGUSTUS transcript 132483 133682 . + . transcript_id "dmel_g13.t2"; +2L AUGUSTUS start_codon 132483 132485 . + 0 transcript_id "dmel_g14.t1"; gene_id "dmel_g14"; +2L AUGUSTUS CDS 132483 133682 1 + 0 transcript_id "dmel_g14.t1"; gene_id "dmel_g14"; +2L AUGUSTUS exon 132483 133682 . + . transcript_id "dmel_g14.t1"; gene_id "dmel_g14"; +2L AUGUSTUS stop_codon 133680 133682 . + 0 transcript_id "dmel_g14.t1"; gene_id "dmel_g14"; +22L AUGUSTUS gene 138695 139336 . - . g_12 +2L AUGUSTUS transcript 138695 139336 . - . transcript_id "dmel_g14.t2"; +2L AUGUSTUS stop_codon 138695 138697 . - 0 transcript_id "dmel_g15.t1"; gene_id "dmel_g15"; +2L AUGUSTUS CDS 138695 139198 1 - 0 transcript_id "dmel_g15.t1"; gene_id "dmel_g15"; +2L AUGUSTUS exon 138695 139198 . - . transcript_id "dmel_g15.t1"; gene_id "dmel_g15"; +2L AUGUSTUS intron 139199 139255 1 - . transcript_id "dmel_g15.t1"; gene_id "dmel_g15"; +2L AUGUSTUS CDS 139256 139336 1 - 0 transcript_id "dmel_g15.t1"; gene_id "dmel_g15"; +2L AUGUSTUS exon 139256 139336 . - . transcript_id "dmel_g15.t1"; gene_id "dmel_g15"; +2L AUGUSTUS start_codon 139334 139336 . - 0 transcript_id "dmel_g15.t1"; gene_id "dmel_g15"; +22L AUGUSTUS gene 139471 142487 . - . g_13 +2L AUGUSTUS transcript 139471 140933 . - . transcript_id "dmel_g15.t2"; +2L AUGUSTUS stop_codon 139471 139473 . - 0 transcript_id "dmel_g16.t1"; gene_id "dmel_g16"; +2L AUGUSTUS CDS 139471 139687 1 - 1 transcript_id "dmel_g16.t1"; gene_id "dmel_g16"; +2L AUGUSTUS exon 139471 139687 . - . transcript_id "dmel_g16.t1"; gene_id "dmel_g16"; +2L AUGUSTUS intron 139688 139740 1 - . transcript_id "dmel_g16.t1"; gene_id "dmel_g16"; +2L AUGUSTUS CDS 139741 139954 1 - 2 transcript_id "dmel_g16.t1"; gene_id "dmel_g16"; +2L AUGUSTUS exon 139741 139954 . - . transcript_id "dmel_g16.t1"; gene_id "dmel_g16"; +2L AUGUSTUS intron 139955 140113 1 - . transcript_id "dmel_g16.t1"; gene_id "dmel_g16"; +2L AUGUSTUS CDS 140114 140933 1 - 0 transcript_id "dmel_g16.t1"; gene_id "dmel_g16"; +2L AUGUSTUS exon 140114 140933 . - . transcript_id "dmel_g16.t1"; gene_id "dmel_g16"; +2L AUGUSTUS start_codon 140931 140933 . - 0 transcript_id "dmel_g16.t1"; gene_id "dmel_g16"; +2L AUGUSTUS transcript 141130 142487 . - . transcript_id "dmel_g16.t2"; +2L AUGUSTUS stop_codon 141130 141132 . - 0 transcript_id "dmel_g16.t2"; gene_id "dmel_g16"; +2L AUGUSTUS CDS 141130 141340 1 - 1 transcript_id "dmel_g16.t2"; gene_id "dmel_g16"; +2L AUGUSTUS exon 141130 141340 . - . transcript_id "dmel_g16.t2"; gene_id "dmel_g16"; +2L AUGUSTUS intron 141341 141395 1 - . transcript_id "dmel_g16.t2"; gene_id "dmel_g16"; +2L AUGUSTUS CDS 141396 141609 1 - 2 transcript_id "dmel_g16.t2"; gene_id "dmel_g16"; +2L AUGUSTUS exon 141396 141609 . - . transcript_id "dmel_g16.t2"; gene_id "dmel_g16"; +2L AUGUSTUS intron 141610 141670 1 - . transcript_id "dmel_g16.t2"; gene_id "dmel_g16"; +2L AUGUSTUS CDS 141671 142487 1 - 0 transcript_id "dmel_g16.t2"; gene_id "dmel_g16"; +2L AUGUSTUS exon 141671 142487 . - . transcript_id "dmel_g16.t2"; gene_id "dmel_g16"; +2L AUGUSTUS start_codon 142485 142487 . - 0 transcript_id "dmel_g16.t2"; gene_id "dmel_g16"; +22L AUGUSTUS gene 143378 144094 . + . g_14 +2L AUGUSTUS transcript 143378 144094 . + . transcript_id "dmel_g16.t3"; +2L AUGUSTUS start_codon 143378 143380 . + 0 transcript_id "dmel_g17.t1"; gene_id "dmel_g17"; +2L AUGUSTUS CDS 143378 144094 1 + 0 transcript_id "dmel_g17.t1"; gene_id "dmel_g17"; +2L AUGUSTUS exon 143378 144094 . + . transcript_id "dmel_g17.t1"; gene_id "dmel_g17"; +2L AUGUSTUS stop_codon 144092 144094 . + 0 transcript_id "dmel_g17.t1"; gene_id "dmel_g17"; +22L AUGUSTUS gene 144374 153106 . - . g_15 +2L AUGUSTUS transcript 144374 153106 . - . transcript_id "dmel_g17.t2"; +2L AUGUSTUS stop_codon 144374 144376 . - 0 transcript_id "dmel_g18.t1"; gene_id "dmel_g18"; +2L AUGUSTUS CDS 144374 145910 0.93 - 1 transcript_id "dmel_g18.t1"; gene_id "dmel_g18"; +2L AUGUSTUS exon 144374 145910 . - . transcript_id "dmel_g18.t1"; gene_id "dmel_g18"; +2L AUGUSTUS intron 145911 147348 1 - . transcript_id "dmel_g18.t1"; gene_id "dmel_g18"; +2L AUGUSTUS CDS 147349 147454 1 - 2 transcript_id "dmel_g18.t1"; gene_id "dmel_g18"; +2L AUGUSTUS exon 147349 147454 . - . transcript_id "dmel_g18.t1"; gene_id "dmel_g18"; +2L AUGUSTUS intron 147455 147510 1 - . transcript_id "dmel_g18.t1"; gene_id "dmel_g18"; +2L AUGUSTUS CDS 147511 147710 1 - 1 transcript_id "dmel_g18.t1"; gene_id "dmel_g18"; +2L AUGUSTUS exon 147511 147710 . - . transcript_id "dmel_g18.t1"; gene_id "dmel_g18"; +2L AUGUSTUS intron 147711 147764 1 - . transcript_id "dmel_g18.t1"; gene_id "dmel_g18"; +2L AUGUSTUS CDS 147765 147936 1 - 2 transcript_id "dmel_g18.t1"; gene_id "dmel_g18"; +2L AUGUSTUS exon 147765 147936 . - . transcript_id "dmel_g18.t1"; gene_id "dmel_g18"; +2L AUGUSTUS intron 147937 147994 1 - . transcript_id "dmel_g18.t1"; gene_id "dmel_g18"; +2L AUGUSTUS CDS 147995 148037 1 - 0 transcript_id "dmel_g18.t1"; gene_id "dmel_g18"; +2L AUGUSTUS exon 147995 148037 . - . transcript_id "dmel_g18.t1"; gene_id "dmel_g18"; +2L AUGUSTUS intron 148038 148091 1 - . transcript_id "dmel_g18.t1"; gene_id "dmel_g18"; +2L AUGUSTUS CDS 148092 148173 1 - 1 transcript_id "dmel_g18.t1"; gene_id "dmel_g18"; +2L AUGUSTUS exon 148092 148173 . - . transcript_id "dmel_g18.t1"; gene_id "dmel_g18"; +2L AUGUSTUS intron 148174 148337 1 - . transcript_id "dmel_g18.t1"; gene_id "dmel_g18"; +2L AUGUSTUS CDS 148338 148825 1 - 0 transcript_id "dmel_g18.t1"; gene_id "dmel_g18"; +2L AUGUSTUS exon 148338 148825 . - . transcript_id "dmel_g18.t1"; gene_id "dmel_g18"; +2L AUGUSTUS intron 148826 148878 1 - . transcript_id "dmel_g18.t1"; gene_id "dmel_g18"; +2L AUGUSTUS CDS 148879 149226 1 - 0 transcript_id "dmel_g18.t1"; gene_id "dmel_g18"; +2L AUGUSTUS exon 148879 149226 . - . transcript_id "dmel_g18.t1"; gene_id "dmel_g18"; +2L AUGUSTUS intron 149227 151114 1 - . transcript_id "dmel_g18.t1"; gene_id "dmel_g18"; +2L AUGUSTUS CDS 151115 153106 0.54 - 0 transcript_id "dmel_g18.t1"; gene_id "dmel_g18"; +2L AUGUSTUS exon 151115 153106 . - . transcript_id "dmel_g18.t1"; gene_id "dmel_g18"; +2L AUGUSTUS start_codon 153104 153106 . - 0 transcript_id "dmel_g18.t1"; gene_id "dmel_g18"; +22L AUGUSTUS gene 153677 155247 . - . g_16 +2L AUGUSTUS transcript 153677 155247 . - . transcript_id "dmel_g18.t2"; +2L AUGUSTUS stop_codon 153677 153679 . - 0 transcript_id "dmel_g19.t1"; gene_id "dmel_g19"; +2L AUGUSTUS CDS 153677 155059 0.46 - 0 transcript_id "dmel_g19.t1"; gene_id "dmel_g19"; +2L AUGUSTUS exon 153677 155059 . - . transcript_id "dmel_g19.t1"; gene_id "dmel_g19"; +2L AUGUSTUS intron 155060 155127 1 - . transcript_id "dmel_g19.t1"; gene_id "dmel_g19"; +2L AUGUSTUS CDS 155128 155247 1 - 0 transcript_id "dmel_g19.t1"; gene_id "dmel_g19"; +2L AUGUSTUS exon 155128 155247 . - . transcript_id "dmel_g19.t1"; gene_id "dmel_g19"; +2L AUGUSTUS start_codon 155245 155247 . - 0 transcript_id "dmel_g19.t1"; gene_id "dmel_g19"; +22L AUGUSTUS gene 155572 155950 . + . g_17 +2L AUGUSTUS transcript 155572 155950 . + . transcript_id "dmel_g19.t2"; +2L AUGUSTUS start_codon 155572 155574 . + 0 transcript_id "dmel_g20.t1"; gene_id "dmel_g20"; +2L AUGUSTUS CDS 155572 155784 1 + 0 transcript_id "dmel_g20.t1"; gene_id "dmel_g20"; +2L AUGUSTUS exon 155572 155784 . + . transcript_id "dmel_g20.t1"; gene_id "dmel_g20"; +2L AUGUSTUS intron 155785 155857 1 + . transcript_id "dmel_g20.t1"; gene_id "dmel_g20"; +2L AUGUSTUS CDS 155858 155950 0.99 + 0 transcript_id "dmel_g20.t1"; gene_id "dmel_g20"; +2L AUGUSTUS exon 155858 155950 . + . transcript_id "dmel_g20.t1"; gene_id "dmel_g20"; +2L AUGUSTUS stop_codon 155948 155950 . + 0 transcript_id "dmel_g20.t1"; gene_id "dmel_g20"; +22L AUGUSTUS gene 156241 157541 . + . g_18 +2L AUGUSTUS transcript 156241 157541 . + . transcript_id "dmel_g20.t2"; +2L AUGUSTUS start_codon 156241 156243 . + 0 transcript_id "dmel_g21.t1"; gene_id "dmel_g21"; +2L AUGUSTUS CDS 156241 156348 0.97 + 0 transcript_id "dmel_g21.t1"; gene_id "dmel_g21"; +2L AUGUSTUS exon 156241 156348 . + . transcript_id "dmel_g21.t1"; gene_id "dmel_g21"; +2L AUGUSTUS intron 156349 156422 1 + . transcript_id "dmel_g21.t1"; gene_id "dmel_g21"; +2L AUGUSTUS CDS 156423 156552 1 + 0 transcript_id "dmel_g21.t1"; gene_id "dmel_g21"; +2L AUGUSTUS exon 156423 156552 . + . transcript_id "dmel_g21.t1"; gene_id "dmel_g21"; +2L AUGUSTUS intron 156553 156735 1 + . transcript_id "dmel_g21.t1"; gene_id "dmel_g21"; +2L AUGUSTUS CDS 156736 157541 1 + 2 transcript_id "dmel_g21.t1"; gene_id "dmel_g21"; +2L AUGUSTUS exon 156736 157541 . + . transcript_id "dmel_g21.t1"; gene_id "dmel_g21"; +2L AUGUSTUS stop_codon 157539 157541 . + 0 transcript_id "dmel_g21.t1"; gene_id "dmel_g21"; +22L AUGUSTUS gene 157944 158603 . - . g_19 +2L AUGUSTUS transcript 157944 158603 . - . transcript_id "dmel_g21.t2"; +2L AUGUSTUS stop_codon 157944 157946 . - 0 transcript_id "dmel_g22.t1"; gene_id "dmel_g22"; +2L AUGUSTUS CDS 157944 158375 1 - 0 transcript_id "dmel_g22.t1"; gene_id "dmel_g22"; +2L AUGUSTUS exon 157944 158375 . - . transcript_id "dmel_g22.t1"; gene_id "dmel_g22"; +2L AUGUSTUS intron 158376 158435 1 - . transcript_id "dmel_g22.t1"; gene_id "dmel_g22"; +2L AUGUSTUS CDS 158436 158603 1 - 0 transcript_id "dmel_g22.t1"; gene_id "dmel_g22"; +2L AUGUSTUS exon 158436 158603 . - . transcript_id "dmel_g22.t1"; gene_id "dmel_g22"; +2L AUGUSTUS start_codon 158601 158603 . - 0 transcript_id "dmel_g22.t1"; gene_id "dmel_g22"; +22L AUGUSTUS gene 175434 201414 . + . g_20 +2L AUGUSTUS transcript 175434 201414 . + . transcript_id "dmel_g22.t2"; +2L AUGUSTUS start_codon 175434 175436 . + 0 transcript_id "dmel_g23.t1"; gene_id "dmel_g23"; +2L AUGUSTUS CDS 175434 175447 0.99 + 0 transcript_id "dmel_g23.t1"; gene_id "dmel_g23"; +2L AUGUSTUS exon 175434 175447 . + . transcript_id "dmel_g23.t1"; gene_id "dmel_g23"; +2L AUGUSTUS intron 175448 183760 0.99 + . transcript_id "dmel_g23.t1"; gene_id "dmel_g23"; +2L AUGUSTUS CDS 183761 185082 0.85 + 1 transcript_id "dmel_g23.t1"; gene_id "dmel_g23"; +2L AUGUSTUS exon 183761 185082 . + . transcript_id "dmel_g23.t1"; gene_id "dmel_g23"; +2L AUGUSTUS intron 185083 185151 1 + . transcript_id "dmel_g23.t1"; gene_id "dmel_g23"; +2L AUGUSTUS CDS 185152 186123 0.8 + 2 transcript_id "dmel_g23.t1"; gene_id "dmel_g23"; +2L AUGUSTUS exon 185152 186123 . + . transcript_id "dmel_g23.t1"; gene_id "dmel_g23"; +2L AUGUSTUS intron 186124 186192 1 + . transcript_id "dmel_g23.t1"; gene_id "dmel_g23"; +2L AUGUSTUS CDS 186193 186855 1 + 2 transcript_id "dmel_g23.t1"; gene_id "dmel_g23"; +2L AUGUSTUS exon 186193 186855 . + . transcript_id "dmel_g23.t1"; gene_id "dmel_g23"; +2L AUGUSTUS intron 186856 186909 1 + . transcript_id "dmel_g23.t1"; gene_id "dmel_g23"; +2L AUGUSTUS CDS 186910 187016 1 + 2 transcript_id "dmel_g23.t1"; gene_id "dmel_g23"; +2L AUGUSTUS exon 186910 187016 . + . transcript_id "dmel_g23.t1"; gene_id "dmel_g23"; +2L AUGUSTUS intron 187017 187481 1 + . transcript_id "dmel_g23.t1"; gene_id "dmel_g23"; +2L AUGUSTUS CDS 187482 199575 0.92 + 0 transcript_id "dmel_g23.t1"; gene_id "dmel_g23"; +2L AUGUSTUS exon 187482 199575 . + . transcript_id "dmel_g23.t1"; gene_id "dmel_g23"; +2L AUGUSTUS intron 199576 199636 1 + . transcript_id "dmel_g23.t1"; gene_id "dmel_g23"; +2L AUGUSTUS CDS 199637 199743 1 + 2 transcript_id "dmel_g23.t1"; gene_id "dmel_g23"; +2L AUGUSTUS exon 199637 199743 . + . transcript_id "dmel_g23.t1"; gene_id "dmel_g23"; +2L AUGUSTUS intron 199744 199902 1 + . transcript_id "dmel_g23.t1"; gene_id "dmel_g23"; +2L AUGUSTUS CDS 199903 199983 1 + 0 transcript_id "dmel_g23.t1"; gene_id "dmel_g23"; +2L AUGUSTUS exon 199903 199983 . + . transcript_id "dmel_g23.t1"; gene_id "dmel_g23"; +2L AUGUSTUS intron 199984 200119 1 + . transcript_id "dmel_g23.t1"; gene_id "dmel_g23"; +2L AUGUSTUS CDS 200120 200315 1 + 0 transcript_id "dmel_g23.t1"; gene_id "dmel_g23"; +2L AUGUSTUS exon 200120 200315 . + . transcript_id "dmel_g23.t1"; gene_id "dmel_g23"; +2L AUGUSTUS intron 200316 200375 1 + . transcript_id "dmel_g23.t1"; gene_id "dmel_g23"; +2L AUGUSTUS CDS 200376 200675 1 + 2 transcript_id "dmel_g23.t1"; gene_id "dmel_g23"; +2L AUGUSTUS exon 200376 200675 . + . transcript_id "dmel_g23.t1"; gene_id "dmel_g23"; +2L AUGUSTUS intron 200676 200741 1 + . transcript_id "dmel_g23.t1"; gene_id "dmel_g23"; +2L AUGUSTUS CDS 200742 201061 0.98 + 2 transcript_id "dmel_g23.t1"; gene_id "dmel_g23"; +2L AUGUSTUS exon 200742 201061 . + . transcript_id "dmel_g23.t1"; gene_id "dmel_g23"; +2L AUGUSTUS intron 201062 201126 1 + . transcript_id "dmel_g23.t1"; gene_id "dmel_g23"; +2L AUGUSTUS CDS 201127 201414 1 + 0 transcript_id "dmel_g23.t1"; gene_id "dmel_g23"; +2L AUGUSTUS exon 201127 201414 . + . transcript_id "dmel_g23.t1"; gene_id "dmel_g23"; +2L AUGUSTUS stop_codon 201412 201414 . + 0 transcript_id "dmel_g23.t1"; gene_id "dmel_g23"; +2L AUGUSTUS transcript 183412 201414 . + . transcript_id "dmel_g23.t2"; +2L AUGUSTUS start_codon 183412 183414 . + 0 transcript_id "dmel_g23.t2"; gene_id "dmel_g23"; +2L AUGUSTUS CDS 183412 183419 1 + 0 transcript_id "dmel_g23.t2"; gene_id "dmel_g23"; +2L AUGUSTUS exon 183412 183419 . + . transcript_id "dmel_g23.t2"; gene_id "dmel_g23"; +2L AUGUSTUS intron 183420 183760 1 + . transcript_id "dmel_g23.t2"; gene_id "dmel_g23"; +2L AUGUSTUS CDS 183761 185082 0.78 + 1 transcript_id "dmel_g23.t2"; gene_id "dmel_g23"; +2L AUGUSTUS exon 183761 185082 . + . transcript_id "dmel_g23.t2"; gene_id "dmel_g23"; +2L AUGUSTUS intron 185083 185151 1 + . transcript_id "dmel_g23.t2"; gene_id "dmel_g23"; +2L AUGUSTUS CDS 185152 186123 0.83 + 2 transcript_id "dmel_g23.t2"; gene_id "dmel_g23"; +2L AUGUSTUS exon 185152 186123 . + . transcript_id "dmel_g23.t2"; gene_id "dmel_g23"; +2L AUGUSTUS intron 186124 186192 1 + . transcript_id "dmel_g23.t2"; gene_id "dmel_g23"; +2L AUGUSTUS CDS 186193 186855 1 + 2 transcript_id "dmel_g23.t2"; gene_id "dmel_g23"; +2L AUGUSTUS exon 186193 186855 . + . transcript_id "dmel_g23.t2"; gene_id "dmel_g23"; +2L AUGUSTUS intron 186856 186909 1 + . transcript_id "dmel_g23.t2"; gene_id "dmel_g23"; +2L AUGUSTUS CDS 186910 187016 1 + 2 transcript_id "dmel_g23.t2"; gene_id "dmel_g23"; +2L AUGUSTUS exon 186910 187016 . + . transcript_id "dmel_g23.t2"; gene_id "dmel_g23"; +2L AUGUSTUS intron 187017 187481 1 + . transcript_id "dmel_g23.t2"; gene_id "dmel_g23"; +2L AUGUSTUS CDS 187482 199575 0.93 + 0 transcript_id "dmel_g23.t2"; gene_id "dmel_g23"; +2L AUGUSTUS exon 187482 199575 . + . transcript_id "dmel_g23.t2"; gene_id "dmel_g23"; +2L AUGUSTUS intron 199576 199636 1 + . transcript_id "dmel_g23.t2"; gene_id "dmel_g23"; +2L AUGUSTUS CDS 199637 199743 1 + 2 transcript_id "dmel_g23.t2"; gene_id "dmel_g23"; +2L AUGUSTUS exon 199637 199743 . + . transcript_id "dmel_g23.t2"; gene_id "dmel_g23"; +2L AUGUSTUS intron 199744 199902 1 + . transcript_id "dmel_g23.t2"; gene_id "dmel_g23"; +2L AUGUSTUS CDS 199903 199983 1 + 0 transcript_id "dmel_g23.t2"; gene_id "dmel_g23"; +2L AUGUSTUS exon 199903 199983 . + . transcript_id "dmel_g23.t2"; gene_id "dmel_g23"; +2L AUGUSTUS intron 199984 200119 1 + . transcript_id "dmel_g23.t2"; gene_id "dmel_g23"; +2L AUGUSTUS CDS 200120 200315 1 + 0 transcript_id "dmel_g23.t2"; gene_id "dmel_g23"; +2L AUGUSTUS exon 200120 200315 . + . transcript_id "dmel_g23.t2"; gene_id "dmel_g23"; +2L AUGUSTUS intron 200316 200375 1 + . transcript_id "dmel_g23.t2"; gene_id "dmel_g23"; +2L AUGUSTUS CDS 200376 200675 1 + 2 transcript_id "dmel_g23.t2"; gene_id "dmel_g23"; +2L AUGUSTUS exon 200376 200675 . + . transcript_id "dmel_g23.t2"; gene_id "dmel_g23"; +2L AUGUSTUS intron 200676 200741 1 + . transcript_id "dmel_g23.t2"; gene_id "dmel_g23"; +2L AUGUSTUS CDS 200742 201061 1 + 2 transcript_id "dmel_g23.t2"; gene_id "dmel_g23"; +2L AUGUSTUS exon 200742 201061 . + . transcript_id "dmel_g23.t2"; gene_id "dmel_g23"; +2L AUGUSTUS intron 201062 201126 1 + . transcript_id "dmel_g23.t2"; gene_id "dmel_g23"; +2L AUGUSTUS CDS 201127 201414 1 + 0 transcript_id "dmel_g23.t2"; gene_id "dmel_g23"; +2L AUGUSTUS exon 201127 201414 . + . transcript_id "dmel_g23.t2"; gene_id "dmel_g23"; +2L AUGUSTUS stop_codon 201412 201414 . + 0 transcript_id "dmel_g23.t2"; gene_id "dmel_g23"; +2L AUGUSTUS transcript 183412 201414 . + . transcript_id "dmel_g23.t3"; +2L AUGUSTUS start_codon 183412 183414 . + 0 transcript_id "dmel_g23.t3"; gene_id "dmel_g23"; +2L AUGUSTUS CDS 183412 183419 1 + 0 transcript_id "dmel_g23.t3"; gene_id "dmel_g23"; +2L AUGUSTUS exon 183412 183419 . + . transcript_id "dmel_g23.t3"; gene_id "dmel_g23"; +2L AUGUSTUS intron 183420 183760 1 + . transcript_id "dmel_g23.t3"; gene_id "dmel_g23"; +2L AUGUSTUS CDS 183761 185082 0.76 + 1 transcript_id "dmel_g23.t3"; gene_id "dmel_g23"; +2L AUGUSTUS exon 183761 185082 . + . transcript_id "dmel_g23.t3"; gene_id "dmel_g23"; +2L AUGUSTUS intron 185083 185151 1 + . transcript_id "dmel_g23.t3"; gene_id "dmel_g23"; +2L AUGUSTUS CDS 185152 186123 0.89 + 2 transcript_id "dmel_g23.t3"; gene_id "dmel_g23"; +2L AUGUSTUS exon 185152 186123 . + . transcript_id "dmel_g23.t3"; gene_id "dmel_g23"; +2L AUGUSTUS intron 186124 186192 1 + . transcript_id "dmel_g23.t3"; gene_id "dmel_g23"; +2L AUGUSTUS CDS 186193 186855 1 + 2 transcript_id "dmel_g23.t3"; gene_id "dmel_g23"; +2L AUGUSTUS exon 186193 186855 . + . transcript_id "dmel_g23.t3"; gene_id "dmel_g23"; +2L AUGUSTUS intron 186856 186909 1 + . transcript_id "dmel_g23.t3"; gene_id "dmel_g23"; +2L AUGUSTUS CDS 186910 187016 1 + 2 transcript_id "dmel_g23.t3"; gene_id "dmel_g23"; +2L AUGUSTUS exon 186910 187016 . + . transcript_id "dmel_g23.t3"; gene_id "dmel_g23"; +2L AUGUSTUS intron 187017 187481 1 + . transcript_id "dmel_g23.t3"; gene_id "dmel_g23"; +2L AUGUSTUS CDS 187482 199575 0.92 + 0 transcript_id "dmel_g23.t3"; gene_id "dmel_g23"; +2L AUGUSTUS exon 187482 199575 . + . transcript_id "dmel_g23.t3"; gene_id "dmel_g23"; +2L AUGUSTUS intron 199576 199636 1 + . transcript_id "dmel_g23.t3"; gene_id "dmel_g23"; +2L AUGUSTUS CDS 199637 199743 1 + 2 transcript_id "dmel_g23.t3"; gene_id "dmel_g23"; +2L AUGUSTUS exon 199637 199743 . + . transcript_id "dmel_g23.t3"; gene_id "dmel_g23"; +2L AUGUSTUS intron 199744 200119 1 + . transcript_id "dmel_g23.t3"; gene_id "dmel_g23"; +2L AUGUSTUS CDS 200120 200315 1 + 0 transcript_id "dmel_g23.t3"; gene_id "dmel_g23"; +2L AUGUSTUS exon 200120 200315 . + . transcript_id "dmel_g23.t3"; gene_id "dmel_g23"; +2L AUGUSTUS intron 200316 200375 1 + . transcript_id "dmel_g23.t3"; gene_id "dmel_g23"; +2L AUGUSTUS CDS 200376 200675 1 + 2 transcript_id "dmel_g23.t3"; gene_id "dmel_g23"; +2L AUGUSTUS exon 200376 200675 . + . transcript_id "dmel_g23.t3"; gene_id "dmel_g23"; +2L AUGUSTUS intron 200676 200741 1 + . transcript_id "dmel_g23.t3"; gene_id "dmel_g23"; +2L AUGUSTUS CDS 200742 201061 1 + 2 transcript_id "dmel_g23.t3"; gene_id "dmel_g23"; +2L AUGUSTUS exon 200742 201061 . + . transcript_id "dmel_g23.t3"; gene_id "dmel_g23"; +2L AUGUSTUS intron 201062 201126 1 + . transcript_id "dmel_g23.t3"; gene_id "dmel_g23"; +2L AUGUSTUS CDS 201127 201414 1 + 0 transcript_id "dmel_g23.t3"; gene_id "dmel_g23"; +2L AUGUSTUS exon 201127 201414 . + . transcript_id "dmel_g23.t3"; gene_id "dmel_g23"; +2L AUGUSTUS stop_codon 201412 201414 . + 0 transcript_id "dmel_g23.t3"; gene_id "dmel_g23"; +22L AUGUSTUS gene 203870 204717 . + . g_21 +2L AUGUSTUS transcript 203870 204717 . + . transcript_id "dmel_g23.t4"; +2L AUGUSTUS start_codon 203870 203872 . + 0 transcript_id "dmel_g24.t1"; gene_id "dmel_g24"; +2L AUGUSTUS CDS 203870 203891 1 + 0 transcript_id "dmel_g24.t1"; gene_id "dmel_g24"; +2L AUGUSTUS exon 203870 203891 . + . transcript_id "dmel_g24.t1"; gene_id "dmel_g24"; +2L AUGUSTUS intron 203892 203992 1 + . transcript_id "dmel_g24.t1"; gene_id "dmel_g24"; +2L AUGUSTUS CDS 203993 204717 1 + 2 transcript_id "dmel_g24.t1"; gene_id "dmel_g24"; +2L AUGUSTUS exon 203993 204717 . + . transcript_id "dmel_g24.t1"; gene_id "dmel_g24"; +2L AUGUSTUS stop_codon 204715 204717 . + 0 transcript_id "dmel_g24.t1"; gene_id "dmel_g24"; +22L AUGUSTUS gene 205044 206044 . - . g_22 +2L AUGUSTUS transcript 205044 206044 . - . transcript_id "dmel_g24.t2"; +2L AUGUSTUS stop_codon 205044 205046 . - 0 transcript_id "dmel_g25.t1"; gene_id "dmel_g25"; +2L AUGUSTUS CDS 205044 205212 1 - 1 transcript_id "dmel_g25.t1"; gene_id "dmel_g25"; +2L AUGUSTUS exon 205044 205212 . - . transcript_id "dmel_g25.t1"; gene_id "dmel_g25"; +2L AUGUSTUS intron 205213 205271 1 - . transcript_id "dmel_g25.t1"; gene_id "dmel_g25"; +2L AUGUSTUS CDS 205272 205476 1 - 2 transcript_id "dmel_g25.t1"; gene_id "dmel_g25"; +2L AUGUSTUS exon 205272 205476 . - . transcript_id "dmel_g25.t1"; gene_id "dmel_g25"; +2L AUGUSTUS intron 205477 205536 1 - . transcript_id "dmel_g25.t1"; gene_id "dmel_g25"; +2L AUGUSTUS CDS 205537 205943 1 - 1 transcript_id "dmel_g25.t1"; gene_id "dmel_g25"; +2L AUGUSTUS exon 205537 205943 . - . transcript_id "dmel_g25.t1"; gene_id "dmel_g25"; +2L AUGUSTUS intron 205944 206000 1 - . transcript_id "dmel_g25.t1"; gene_id "dmel_g25"; +2L AUGUSTUS CDS 206001 206044 0.99 - 0 transcript_id "dmel_g25.t1"; gene_id "dmel_g25"; +2L AUGUSTUS exon 206001 206044 . - . transcript_id "dmel_g25.t1"; gene_id "dmel_g25"; +2L AUGUSTUS start_codon 206042 206044 . - 0 transcript_id "dmel_g25.t1"; gene_id "dmel_g25"; +22L AUGUSTUS gene 207512 209858 . + . g_23 +2L AUGUSTUS transcript 207512 209858 . + . transcript_id "dmel_g25.t2"; +2L AUGUSTUS start_codon 207512 207514 . + 0 transcript_id "dmel_g26.t1"; gene_id "dmel_g26"; +2L AUGUSTUS CDS 207512 207631 1 + 0 transcript_id "dmel_g26.t1"; gene_id "dmel_g26"; +2L AUGUSTUS exon 207512 207631 . + . transcript_id "dmel_g26.t1"; gene_id "dmel_g26"; +2L AUGUSTUS intron 207632 207710 1 + . transcript_id "dmel_g26.t1"; gene_id "dmel_g26"; +2L AUGUSTUS CDS 207711 208608 1 + 0 transcript_id "dmel_g26.t1"; gene_id "dmel_g26"; +2L AUGUSTUS exon 207711 208608 . + . transcript_id "dmel_g26.t1"; gene_id "dmel_g26"; +2L AUGUSTUS intron 208609 208728 1 + . transcript_id "dmel_g26.t1"; gene_id "dmel_g26"; +2L AUGUSTUS CDS 208729 209858 1 + 2 transcript_id "dmel_g26.t1"; gene_id "dmel_g26"; +2L AUGUSTUS exon 208729 209858 . + . transcript_id "dmel_g26.t1"; gene_id "dmel_g26"; +2L AUGUSTUS stop_codon 209856 209858 . + 0 transcript_id "dmel_g26.t1"; gene_id "dmel_g26"; +22L AUGUSTUS gene 212185 221643 . - . g_24 +2L AUGUSTUS transcript 212185 221643 . - . transcript_id "dmel_g26.t2"; +2L AUGUSTUS stop_codon 212185 212187 . - 0 transcript_id "dmel_g27.t1"; gene_id "dmel_g27"; +2L AUGUSTUS CDS 212185 214942 1 - 1 transcript_id "dmel_g27.t1"; gene_id "dmel_g27"; +2L AUGUSTUS exon 212185 214942 . - . transcript_id "dmel_g27.t1"; gene_id "dmel_g27"; +2L AUGUSTUS intron 214943 215033 1 - . transcript_id "dmel_g27.t1"; gene_id "dmel_g27"; +2L AUGUSTUS CDS 215034 215676 1 - 2 transcript_id "dmel_g27.t1"; gene_id "dmel_g27"; +2L AUGUSTUS exon 215034 215676 . - . transcript_id "dmel_g27.t1"; gene_id "dmel_g27"; +2L AUGUSTUS intron 215677 215772 1 - . transcript_id "dmel_g27.t1"; gene_id "dmel_g27"; +2L AUGUSTUS CDS 215773 216007 1 - 0 transcript_id "dmel_g27.t1"; gene_id "dmel_g27"; +2L AUGUSTUS exon 215773 216007 . - . transcript_id "dmel_g27.t1"; gene_id "dmel_g27"; +2L AUGUSTUS intron 216008 216076 1 - . transcript_id "dmel_g27.t1"; gene_id "dmel_g27"; +2L AUGUSTUS CDS 216077 216275 1 - 1 transcript_id "dmel_g27.t1"; gene_id "dmel_g27"; +2L AUGUSTUS exon 216077 216275 . - . transcript_id "dmel_g27.t1"; gene_id "dmel_g27"; +2L AUGUSTUS intron 216276 216344 1 - . transcript_id "dmel_g27.t1"; gene_id "dmel_g27"; +2L AUGUSTUS CDS 216345 216573 1 - 2 transcript_id "dmel_g27.t1"; gene_id "dmel_g27"; +2L AUGUSTUS exon 216345 216573 . - . transcript_id "dmel_g27.t1"; gene_id "dmel_g27"; +2L AUGUSTUS intron 216574 216631 1 - . transcript_id "dmel_g27.t1"; gene_id "dmel_g27"; +2L AUGUSTUS CDS 216632 218885 0.99 - 0 transcript_id "dmel_g27.t1"; gene_id "dmel_g27"; +2L AUGUSTUS exon 216632 218885 . - . transcript_id "dmel_g27.t1"; gene_id "dmel_g27"; +2L AUGUSTUS intron 218886 221505 0.99 - . transcript_id "dmel_g27.t1"; gene_id "dmel_g27"; +2L AUGUSTUS CDS 221506 221643 0.95 - 0 transcript_id "dmel_g27.t1"; gene_id "dmel_g27"; +2L AUGUSTUS exon 221506 221643 . - . transcript_id "dmel_g27.t1"; gene_id "dmel_g27"; +2L AUGUSTUS start_codon 221641 221643 . - 0 transcript_id "dmel_g27.t1"; gene_id "dmel_g27"; +22L AUGUSTUS gene 232575 233965 . + . g_25 +2L AUGUSTUS transcript 232575 233965 . + . transcript_id "dmel_g27.t2"; +2L AUGUSTUS start_codon 232575 232577 . + 0 transcript_id "dmel_g28.t1"; gene_id "dmel_g28"; +2L AUGUSTUS CDS 232575 233154 0.91 + 0 transcript_id "dmel_g28.t1"; gene_id "dmel_g28"; +2L AUGUSTUS exon 232575 233154 . + . transcript_id "dmel_g28.t1"; gene_id "dmel_g28"; +2L AUGUSTUS intron 233155 233216 1 + . transcript_id "dmel_g28.t1"; gene_id "dmel_g28"; +2L AUGUSTUS CDS 233217 233965 1 + 2 transcript_id "dmel_g28.t1"; gene_id "dmel_g28"; +2L AUGUSTUS exon 233217 233965 . + . transcript_id "dmel_g28.t1"; gene_id "dmel_g28"; +2L AUGUSTUS stop_codon 233963 233965 . + 0 transcript_id "dmel_g28.t1"; gene_id "dmel_g28"; +22L AUGUSTUS gene 233993 242287 . - . g_26 +2L AUGUSTUS transcript 233993 242266 . - . transcript_id "dmel_g28.t2"; +2L AUGUSTUS stop_codon 233993 233995 . - 0 transcript_id "dmel_g29.t1"; gene_id "dmel_g29"; +2L AUGUSTUS CDS 233993 234174 1 - 2 transcript_id "dmel_g29.t1"; gene_id "dmel_g29"; +2L AUGUSTUS exon 233993 234174 . - . transcript_id "dmel_g29.t1"; gene_id "dmel_g29"; +2L AUGUSTUS intron 234175 234236 1 - . transcript_id "dmel_g29.t1"; gene_id "dmel_g29"; +2L AUGUSTUS CDS 234237 242143 0.92 - 1 transcript_id "dmel_g29.t1"; gene_id "dmel_g29"; +2L AUGUSTUS exon 234237 242143 . - . transcript_id "dmel_g29.t1"; gene_id "dmel_g29"; +2L AUGUSTUS intron 242144 242243 1 - . transcript_id "dmel_g29.t1"; gene_id "dmel_g29"; +2L AUGUSTUS CDS 242244 242266 0.95 - 0 transcript_id "dmel_g29.t1"; gene_id "dmel_g29"; +2L AUGUSTUS exon 242244 242266 . - . transcript_id "dmel_g29.t1"; gene_id "dmel_g29"; +2L AUGUSTUS start_codon 242264 242266 . - 0 transcript_id "dmel_g29.t1"; gene_id "dmel_g29"; +2L AUGUSTUS transcript 233993 242287 . - . transcript_id "dmel_g29.t2"; +2L AUGUSTUS stop_codon 233993 233995 . - 0 transcript_id "dmel_g29.t2"; gene_id "dmel_g29"; +2L AUGUSTUS CDS 233993 234174 1 - 2 transcript_id "dmel_g29.t2"; gene_id "dmel_g29"; +2L AUGUSTUS exon 233993 234174 . - . transcript_id "dmel_g29.t2"; gene_id "dmel_g29"; +2L AUGUSTUS intron 234175 234236 1 - . transcript_id "dmel_g29.t2"; gene_id "dmel_g29"; +2L AUGUSTUS CDS 234237 242143 0.74 - 1 transcript_id "dmel_g29.t2"; gene_id "dmel_g29"; +2L AUGUSTUS exon 234237 242143 . - . transcript_id "dmel_g29.t2"; gene_id "dmel_g29"; +2L AUGUSTUS intron 242144 242243 0.5 - . transcript_id "dmel_g29.t2"; gene_id "dmel_g29"; +2L AUGUSTUS CDS 242244 242287 0.35 - 0 transcript_id "dmel_g29.t2"; gene_id "dmel_g29"; +2L AUGUSTUS exon 242244 242287 . - . transcript_id "dmel_g29.t2"; gene_id "dmel_g29"; +2L AUGUSTUS start_codon 242285 242287 . - 0 transcript_id "dmel_g29.t2"; gene_id "dmel_g29"; +22L AUGUSTUS gene 251194 252317 . - . g_27 +2L AUGUSTUS transcript 251194 252317 . - . transcript_id "dmel_g29.t3"; +2L AUGUSTUS stop_codon 251194 251196 . - 0 transcript_id "dmel_g30.t1"; gene_id "dmel_g30"; +2L AUGUSTUS CDS 251194 251464 1 - 1 transcript_id "dmel_g30.t1"; gene_id "dmel_g30"; +2L AUGUSTUS exon 251194 251464 . - . transcript_id "dmel_g30.t1"; gene_id "dmel_g30"; +2L AUGUSTUS intron 251465 251526 1 - . transcript_id "dmel_g30.t1"; gene_id "dmel_g30"; +2L AUGUSTUS CDS 251527 251801 1 - 0 transcript_id "dmel_g30.t1"; gene_id "dmel_g30"; +2L AUGUSTUS exon 251527 251801 . - . transcript_id "dmel_g30.t1"; gene_id "dmel_g30"; +2L AUGUSTUS intron 251802 251855 1 - . transcript_id "dmel_g30.t1"; gene_id "dmel_g30"; +2L AUGUSTUS CDS 251856 251924 1 - 0 transcript_id "dmel_g30.t1"; gene_id "dmel_g30"; +2L AUGUSTUS exon 251856 251924 . - . transcript_id "dmel_g30.t1"; gene_id "dmel_g30"; +2L AUGUSTUS intron 251925 251978 1 - . transcript_id "dmel_g30.t1"; gene_id "dmel_g30"; +2L AUGUSTUS CDS 251979 252166 1 - 2 transcript_id "dmel_g30.t1"; gene_id "dmel_g30"; +2L AUGUSTUS exon 251979 252166 . - . transcript_id "dmel_g30.t1"; gene_id "dmel_g30"; +2L AUGUSTUS intron 252167 252226 1 - . transcript_id "dmel_g30.t1"; gene_id "dmel_g30"; +2L AUGUSTUS CDS 252227 252317 1 - 0 transcript_id "dmel_g30.t1"; gene_id "dmel_g30"; +2L AUGUSTUS exon 252227 252317 . - . transcript_id "dmel_g30.t1"; gene_id "dmel_g30"; +2L AUGUSTUS start_codon 252315 252317 . - 0 transcript_id "dmel_g30.t1"; gene_id "dmel_g30"; +22L AUGUSTUS gene 252663 254379 . - . g_28 +2L AUGUSTUS transcript 252663 254379 . - . transcript_id "dmel_g30.t2"; +2L AUGUSTUS stop_codon 252663 252665 . - 0 transcript_id "dmel_g31.t1"; gene_id "dmel_g31"; +2L AUGUSTUS CDS 252663 253145 1 - 0 transcript_id "dmel_g31.t1"; gene_id "dmel_g31"; +2L AUGUSTUS exon 252663 253145 . - . transcript_id "dmel_g31.t1"; gene_id "dmel_g31"; +2L AUGUSTUS intron 253146 253219 1 - . transcript_id "dmel_g31.t1"; gene_id "dmel_g31"; +2L AUGUSTUS CDS 253220 253385 1 - 1 transcript_id "dmel_g31.t1"; gene_id "dmel_g31"; +2L AUGUSTUS exon 253220 253385 . - . transcript_id "dmel_g31.t1"; gene_id "dmel_g31"; +2L AUGUSTUS intron 253386 253445 1 - . transcript_id "dmel_g31.t1"; gene_id "dmel_g31"; +2L AUGUSTUS CDS 253446 253890 1 - 2 transcript_id "dmel_g31.t1"; gene_id "dmel_g31"; +2L AUGUSTUS exon 253446 253890 . - . transcript_id "dmel_g31.t1"; gene_id "dmel_g31"; +2L AUGUSTUS intron 253891 253955 1 - . transcript_id "dmel_g31.t1"; gene_id "dmel_g31"; +2L AUGUSTUS CDS 253956 254379 0.89 - 0 transcript_id "dmel_g31.t1"; gene_id "dmel_g31"; +2L AUGUSTUS exon 253956 254379 . - . transcript_id "dmel_g31.t1"; gene_id "dmel_g31"; +2L AUGUSTUS start_codon 254377 254379 . - 0 transcript_id "dmel_g31.t1"; gene_id "dmel_g31"; +22L AUGUSTUS gene 263782 266688 . - . g_29 +2L AUGUSTUS transcript 263782 266688 . - . transcript_id "dmel_g31.t2"; +2L AUGUSTUS stop_codon 263782 263784 . - 0 transcript_id "dmel_g32.t1"; gene_id "dmel_g32"; +2L AUGUSTUS CDS 263782 266688 1 - 0 transcript_id "dmel_g32.t1"; gene_id "dmel_g32"; +2L AUGUSTUS exon 263782 266688 . - . transcript_id "dmel_g32.t1"; gene_id "dmel_g32"; +2L AUGUSTUS start_codon 266686 266688 . - 0 transcript_id "dmel_g32.t1"; gene_id "dmel_g32"; +22L AUGUSTUS gene 269192 271314 . + . g_30 +2L AUGUSTUS transcript 269192 271314 . + . transcript_id "dmel_g32.t2"; +2L AUGUSTUS start_codon 269192 269194 . + 0 transcript_id "dmel_g33.t1"; gene_id "dmel_g33"; +2L AUGUSTUS CDS 269192 269389 0.99 + 0 transcript_id "dmel_g33.t1"; gene_id "dmel_g33"; +2L AUGUSTUS exon 269192 269389 . + . transcript_id "dmel_g33.t1"; gene_id "dmel_g33"; +2L AUGUSTUS intron 269390 269457 1 + . transcript_id "dmel_g33.t1"; gene_id "dmel_g33"; +2L AUGUSTUS CDS 269458 270606 1 + 0 transcript_id "dmel_g33.t1"; gene_id "dmel_g33"; +2L AUGUSTUS exon 269458 270606 . + . transcript_id "dmel_g33.t1"; gene_id "dmel_g33"; +2L AUGUSTUS intron 270607 270660 1 + . transcript_id "dmel_g33.t1"; gene_id "dmel_g33"; +2L AUGUSTUS CDS 270661 271314 1 + 0 transcript_id "dmel_g33.t1"; gene_id "dmel_g33"; +2L AUGUSTUS exon 270661 271314 . + . transcript_id "dmel_g33.t1"; gene_id "dmel_g33"; +2L AUGUSTUS stop_codon 271312 271314 . + 0 transcript_id "dmel_g33.t1"; gene_id "dmel_g33"; +22L AUGUSTUS gene 271967 273634 . - . g_31 +2L AUGUSTUS transcript 271967 273634 . - . transcript_id "dmel_g33.t2"; +2L AUGUSTUS stop_codon 271967 271969 . - 0 transcript_id "dmel_g34.t1"; gene_id "dmel_g34"; +2L AUGUSTUS CDS 271967 272506 0.75 - 0 transcript_id "dmel_g34.t1"; gene_id "dmel_g34"; +2L AUGUSTUS exon 271967 272506 . - . transcript_id "dmel_g34.t1"; gene_id "dmel_g34"; +2L AUGUSTUS intron 272507 272554 1 - . transcript_id "dmel_g34.t1"; gene_id "dmel_g34"; +2L AUGUSTUS CDS 272555 273634 1 - 0 transcript_id "dmel_g34.t1"; gene_id "dmel_g34"; +2L AUGUSTUS exon 272555 273634 . - . transcript_id "dmel_g34.t1"; gene_id "dmel_g34"; +2L AUGUSTUS start_codon 273632 273634 . - 0 transcript_id "dmel_g34.t1"; gene_id "dmel_g34"; +22L AUGUSTUS gene 273986 274651 . + . g_32 +2L AUGUSTUS transcript 273986 274651 . + . transcript_id "dmel_g34.t2"; +2L AUGUSTUS start_codon 273986 273988 . + 0 transcript_id "dmel_g35.t1"; gene_id "dmel_g35"; +2L AUGUSTUS CDS 273986 274651 1 + 0 transcript_id "dmel_g35.t1"; gene_id "dmel_g35"; +2L AUGUSTUS exon 273986 274651 . + . transcript_id "dmel_g35.t1"; gene_id "dmel_g35"; +2L AUGUSTUS stop_codon 274649 274651 . + 0 transcript_id "dmel_g35.t1"; gene_id "dmel_g35"; +22L AUGUSTUS gene 274947 277142 . - . g_33 +2L AUGUSTUS transcript 274947 277142 . - . transcript_id "dmel_g35.t2"; +2L AUGUSTUS stop_codon 274947 274949 . - 0 transcript_id "dmel_g36.t1"; gene_id "dmel_g36"; +2L AUGUSTUS CDS 274947 275251 1 - 2 transcript_id "dmel_g36.t1"; gene_id "dmel_g36"; +2L AUGUSTUS exon 274947 275251 . - . transcript_id "dmel_g36.t1"; gene_id "dmel_g36"; +2L AUGUSTUS intron 275252 275318 1 - . transcript_id "dmel_g36.t1"; gene_id "dmel_g36"; +2L AUGUSTUS CDS 275319 276497 1 - 2 transcript_id "dmel_g36.t1"; gene_id "dmel_g36"; +2L AUGUSTUS exon 275319 276497 . - . transcript_id "dmel_g36.t1"; gene_id "dmel_g36"; +2L AUGUSTUS intron 276498 276738 1 - . transcript_id "dmel_g36.t1"; gene_id "dmel_g36"; +2L AUGUSTUS CDS 276739 276903 1 - 2 transcript_id "dmel_g36.t1"; gene_id "dmel_g36"; +2L AUGUSTUS exon 276739 276903 . - . transcript_id "dmel_g36.t1"; gene_id "dmel_g36"; +2L AUGUSTUS intron 276904 276958 1 - . transcript_id "dmel_g36.t1"; gene_id "dmel_g36"; +2L AUGUSTUS CDS 276959 277142 1 - 0 transcript_id "dmel_g36.t1"; gene_id "dmel_g36"; +2L AUGUSTUS exon 276959 277142 . - . transcript_id "dmel_g36.t1"; gene_id "dmel_g36"; +2L AUGUSTUS start_codon 277140 277142 . - 0 transcript_id "dmel_g36.t1"; gene_id "dmel_g36"; +22L AUGUSTUS gene 277826 281514 . + . g_34 +2L AUGUSTUS transcript 277826 281514 . + . transcript_id "dmel_g36.t2"; +2L AUGUSTUS start_codon 277826 277828 . + 0 transcript_id "dmel_g37.t1"; gene_id "dmel_g37"; +2L AUGUSTUS CDS 277826 277863 0.79 + 0 transcript_id "dmel_g37.t1"; gene_id "dmel_g37"; +2L AUGUSTUS exon 277826 277863 . + . transcript_id "dmel_g37.t1"; gene_id "dmel_g37"; +2L AUGUSTUS intron 277864 277929 1 + . transcript_id "dmel_g37.t1"; gene_id "dmel_g37"; +2L AUGUSTUS CDS 277930 278323 1 + 1 transcript_id "dmel_g37.t1"; gene_id "dmel_g37"; +2L AUGUSTUS exon 277930 278323 . + . transcript_id "dmel_g37.t1"; gene_id "dmel_g37"; +2L AUGUSTUS intron 278324 278642 1 + . transcript_id "dmel_g37.t1"; gene_id "dmel_g37"; +2L AUGUSTUS CDS 278643 279124 1 + 0 transcript_id "dmel_g37.t1"; gene_id "dmel_g37"; +2L AUGUSTUS exon 278643 279124 . + . transcript_id "dmel_g37.t1"; gene_id "dmel_g37"; +2L AUGUSTUS intron 279125 279184 1 + . transcript_id "dmel_g37.t1"; gene_id "dmel_g37"; +2L AUGUSTUS CDS 279185 279805 1 + 1 transcript_id "dmel_g37.t1"; gene_id "dmel_g37"; +2L AUGUSTUS exon 279185 279805 . + . transcript_id "dmel_g37.t1"; gene_id "dmel_g37"; +2L AUGUSTUS intron 279806 279869 1 + . transcript_id "dmel_g37.t1"; gene_id "dmel_g37"; +2L AUGUSTUS CDS 279870 280040 1 + 1 transcript_id "dmel_g37.t1"; gene_id "dmel_g37"; +2L AUGUSTUS exon 279870 280040 . + . transcript_id "dmel_g37.t1"; gene_id "dmel_g37"; +2L AUGUSTUS intron 280041 280109 1 + . transcript_id "dmel_g37.t1"; gene_id "dmel_g37"; +2L AUGUSTUS CDS 280110 280422 1 + 1 transcript_id "dmel_g37.t1"; gene_id "dmel_g37"; +2L AUGUSTUS exon 280110 280422 . + . transcript_id "dmel_g37.t1"; gene_id "dmel_g37"; +2L AUGUSTUS intron 280423 280476 1 + . transcript_id "dmel_g37.t1"; gene_id "dmel_g37"; +2L AUGUSTUS CDS 280477 281514 0.99 + 0 transcript_id "dmel_g37.t1"; gene_id "dmel_g37"; +2L AUGUSTUS exon 280477 281514 . + . transcript_id "dmel_g37.t1"; gene_id "dmel_g37"; +2L AUGUSTUS stop_codon 281512 281514 . + 0 transcript_id "dmel_g37.t1"; gene_id "dmel_g37"; +2L AUGUSTUS transcript 277826 281514 . + . transcript_id "dmel_g37.t2"; +2L AUGUSTUS start_codon 277826 277828 . + 0 transcript_id "dmel_g37.t2"; gene_id "dmel_g37"; +2L AUGUSTUS CDS 277826 277863 1 + 0 transcript_id "dmel_g37.t2"; gene_id "dmel_g37"; +2L AUGUSTUS exon 277826 277863 . + . transcript_id "dmel_g37.t2"; gene_id "dmel_g37"; +2L AUGUSTUS intron 277864 277929 1 + . transcript_id "dmel_g37.t2"; gene_id "dmel_g37"; +2L AUGUSTUS CDS 277930 278323 1 + 1 transcript_id "dmel_g37.t2"; gene_id "dmel_g37"; +2L AUGUSTUS exon 277930 278323 . + . transcript_id "dmel_g37.t2"; gene_id "dmel_g37"; +2L AUGUSTUS intron 278324 278642 1 + . transcript_id "dmel_g37.t2"; gene_id "dmel_g37"; +2L AUGUSTUS CDS 278643 279124 1 + 0 transcript_id "dmel_g37.t2"; gene_id "dmel_g37"; +2L AUGUSTUS exon 278643 279124 . + . transcript_id "dmel_g37.t2"; gene_id "dmel_g37"; +2L AUGUSTUS intron 279125 279184 1 + . transcript_id "dmel_g37.t2"; gene_id "dmel_g37"; +2L AUGUSTUS CDS 279185 279805 1 + 1 transcript_id "dmel_g37.t2"; gene_id "dmel_g37"; +2L AUGUSTUS exon 279185 279805 . + . transcript_id "dmel_g37.t2"; gene_id "dmel_g37"; +2L AUGUSTUS intron 279806 279869 1 + . transcript_id "dmel_g37.t2"; gene_id "dmel_g37"; +2L AUGUSTUS CDS 279870 280040 1 + 1 transcript_id "dmel_g37.t2"; gene_id "dmel_g37"; +2L AUGUSTUS exon 279870 280040 . + . transcript_id "dmel_g37.t2"; gene_id "dmel_g37"; +2L AUGUSTUS intron 280041 280109 1 + . transcript_id "dmel_g37.t2"; gene_id "dmel_g37"; +2L AUGUSTUS CDS 280110 281514 1 + 1 transcript_id "dmel_g37.t2"; gene_id "dmel_g37"; +2L AUGUSTUS exon 280110 281514 . + . transcript_id "dmel_g37.t2"; gene_id "dmel_g37"; +2L AUGUSTUS stop_codon 281512 281514 . + 0 transcript_id "dmel_g37.t2"; gene_id "dmel_g37"; +22L AUGUSTUS gene 282172 283147 . - . g_35 +2L AUGUSTUS transcript 282172 283147 . - . transcript_id "dmel_g37.t3"; +2L AUGUSTUS stop_codon 282172 282174 . - 0 transcript_id "dmel_g38.t1"; gene_id "dmel_g38"; +2L AUGUSTUS CDS 282172 282505 1 - 1 transcript_id "dmel_g38.t1"; gene_id "dmel_g38"; +2L AUGUSTUS exon 282172 282505 . - . transcript_id "dmel_g38.t1"; gene_id "dmel_g38"; +2L AUGUSTUS intron 282506 282653 1 - . transcript_id "dmel_g38.t1"; gene_id "dmel_g38"; +2L AUGUSTUS CDS 282654 283147 0.97 - 0 transcript_id "dmel_g38.t1"; gene_id "dmel_g38"; +2L AUGUSTUS exon 282654 283147 . - . transcript_id "dmel_g38.t1"; gene_id "dmel_g38"; +2L AUGUSTUS start_codon 283145 283147 . - 0 transcript_id "dmel_g38.t1"; gene_id "dmel_g38"; +22L AUGUSTUS gene 283886 285633 . - . g_36 +2L AUGUSTUS transcript 283886 285633 . - . transcript_id "dmel_g38.t2"; +2L AUGUSTUS stop_codon 283886 283888 . - 0 transcript_id "dmel_g39.t1"; gene_id "dmel_g39"; +2L AUGUSTUS CDS 283886 284210 0.99 - 1 transcript_id "dmel_g39.t1"; gene_id "dmel_g39"; +2L AUGUSTUS exon 283886 284210 . - . transcript_id "dmel_g39.t1"; gene_id "dmel_g39"; +2L AUGUSTUS intron 284211 284747 1 - . transcript_id "dmel_g39.t1"; gene_id "dmel_g39"; +2L AUGUSTUS CDS 284748 284968 1 - 0 transcript_id "dmel_g39.t1"; gene_id "dmel_g39"; +2L AUGUSTUS exon 284748 284968 . - . transcript_id "dmel_g39.t1"; gene_id "dmel_g39"; +2L AUGUSTUS intron 284969 285432 1 - . transcript_id "dmel_g39.t1"; gene_id "dmel_g39"; +2L AUGUSTUS CDS 285433 285633 0.96 - 0 transcript_id "dmel_g39.t1"; gene_id "dmel_g39"; +2L AUGUSTUS exon 285433 285633 . - . transcript_id "dmel_g39.t1"; gene_id "dmel_g39"; +2L AUGUSTUS start_codon 285631 285633 . - 0 transcript_id "dmel_g39.t1"; gene_id "dmel_g39"; +22L AUGUSTUS gene 287402 288919 . - . g_38 +2L AUGUSTUS transcript 287402 288919 . - . transcript_id "dmel_g39.t2"; +2L AUGUSTUS stop_codon 287402 287404 . - 0 transcript_id "dmel_g40.t1"; gene_id "dmel_g40"; +2L AUGUSTUS CDS 287402 288919 1 - 0 transcript_id "dmel_g40.t1"; gene_id "dmel_g40"; +2L AUGUSTUS exon 287402 288919 . - . transcript_id "dmel_g40.t1"; gene_id "dmel_g40"; +2L AUGUSTUS start_codon 288917 288919 . - 0 transcript_id "dmel_g40.t1"; gene_id "dmel_g40"; +22L AUGUSTUS gene 290804 291010 . - . g_39 +2L AUGUSTUS transcript 290804 291010 . - . transcript_id "dmel_g40.t2"; +2L AUGUSTUS stop_codon 290804 290806 . - 0 transcript_id "dmel_g41.t1"; gene_id "dmel_g41"; +2L AUGUSTUS CDS 290804 291010 0.96 - 0 transcript_id "dmel_g41.t1"; gene_id "dmel_g41"; +2L AUGUSTUS exon 290804 291010 . - . transcript_id "dmel_g41.t1"; gene_id "dmel_g41"; +2L AUGUSTUS start_codon 291008 291010 . - 0 transcript_id "dmel_g41.t1"; gene_id "dmel_g41"; +22L AUGUSTUS gene 292569 293002 . + . g_40 +2L AUGUSTUS transcript 292569 293002 . + . transcript_id "dmel_g41.t2"; +2L AUGUSTUS start_codon 292569 292571 . + 0 transcript_id "dmel_g42.t1"; gene_id "dmel_g42"; +2L AUGUSTUS CDS 292569 292660 1 + 0 transcript_id "dmel_g42.t1"; gene_id "dmel_g42"; +2L AUGUSTUS exon 292569 292660 . + . transcript_id "dmel_g42.t1"; gene_id "dmel_g42"; +2L AUGUSTUS intron 292661 292716 1 + . transcript_id "dmel_g42.t1"; gene_id "dmel_g42"; +2L AUGUSTUS CDS 292717 293002 1 + 1 transcript_id "dmel_g42.t1"; gene_id "dmel_g42"; +2L AUGUSTUS exon 292717 293002 . + . transcript_id "dmel_g42.t1"; gene_id "dmel_g42"; +2L AUGUSTUS stop_codon 293000 293002 . + 0 transcript_id "dmel_g42.t1"; gene_id "dmel_g42"; +22L AUGUSTUS gene 293622 294484 . - . g_41 +2L AUGUSTUS transcript 293622 294484 . - . transcript_id "dmel_g42.t2"; +2L AUGUSTUS stop_codon 293622 293624 . - 0 transcript_id "dmel_g43.t1"; gene_id "dmel_g43"; +2L AUGUSTUS CDS 293622 294372 1 - 1 transcript_id "dmel_g43.t1"; gene_id "dmel_g43"; +2L AUGUSTUS exon 293622 294372 . - . transcript_id "dmel_g43.t1"; gene_id "dmel_g43"; +2L AUGUSTUS intron 294373 294440 1 - . transcript_id "dmel_g43.t1"; gene_id "dmel_g43"; +2L AUGUSTUS CDS 294441 294484 1 - 0 transcript_id "dmel_g43.t1"; gene_id "dmel_g43"; +2L AUGUSTUS exon 294441 294484 . - . transcript_id "dmel_g43.t1"; gene_id "dmel_g43"; +2L AUGUSTUS start_codon 294482 294484 . - 0 transcript_id "dmel_g43.t1"; gene_id "dmel_g43"; diff --git a/example/run_tsebra_example.sh b/example/run_tsebra_example.sh index b8aab2a..402f79c 100755 --- a/example/run_tsebra_example.sh +++ b/example/run_tsebra_example.sh @@ -28,7 +28,7 @@ b2=$new_b2 o=$d/braker1+2.gtf -echo "*** Running PrEvCo ***\n" +echo "*** Running TSEBRA ***\n" $c/../bin/tsebra.py -g $b1,$b2 -c $c/../config/default.cfg -e $h1,$h2 -o $o diff --git a/example/tsebra_workdir/braker1+2.gtf b/example/tsebra_workdir/braker1+2.gtf new file mode 100644 index 0000000..a7d19d3 --- /dev/null +++ b/example/tsebra_workdir/braker1+2.gtf @@ -0,0 +1,784 @@ +2L AUGUSTUS gene 22092 22867 . - . g_1 +2L AUGUSTUS transcript 22092 22867 . - . anno1.2L-_file_1_file_1_g5328.t1 +2L AUGUSTUS stop_codon 22092 22094 . - . transcript_id "anno1.2L-_file_1_file_1_g5328.t1"; gene_id "g_1"; +2L AUGUSTUS CDS 22092 22687 0.36 - 1 transcript_id "anno1.2L-_file_1_file_1_g5328.t1"; gene_id "g_1"; +2L AUGUSTUS exon 22092 22687 . - . transcript_id "anno1.2L-_file_1_file_1_g5328.t1"; gene_id "g_1"; +2L AUGUSTUS intron 22688 22742 0.42 - . transcript_id "anno1.2L-_file_1_file_1_g5328.t1"; gene_id "g_1"; +2L AUGUSTUS CDS 22743 22867 0.71 - 0 transcript_id "anno1.2L-_file_1_file_1_g5328.t1"; gene_id "g_1"; +2L AUGUSTUS exon 22743 22867 . - . transcript_id "anno1.2L-_file_1_file_1_g5328.t1"; gene_id "g_1"; +2L AUGUSTUS start_codon 22865 22867 . - 0 transcript_id "anno1.2L-_file_1_file_1_g5328.t1"; gene_id "g_1"; +2L AUGUSTUS gene 26521 40784 . - . g_2 +2L AUGUSTUS transcript 26521 40784 . - . anno2.2L-_file_1_file_1_g3.t1 +2L AUGUSTUS stop_codon 26521 26523 . - 0 transcript_id "anno2.2L-_file_1_file_1_g3.t1"; gene_id "g_2"; +2L AUGUSTUS CDS 26521 26688 1 - 0 transcript_id "anno2.2L-_file_1_file_1_g3.t1"; gene_id "g_2"; +2L AUGUSTUS exon 26521 26688 . - . transcript_id "anno2.2L-_file_1_file_1_g3.t1"; gene_id "g_2"; +2L AUGUSTUS intron 26689 26765 1 - . transcript_id "anno2.2L-_file_1_file_1_g3.t1"; gene_id "g_2"; +2L AUGUSTUS CDS 26766 26964 1 - 1 transcript_id "anno2.2L-_file_1_file_1_g3.t1"; gene_id "g_2"; +2L AUGUSTUS exon 26766 26964 . - . transcript_id "anno2.2L-_file_1_file_1_g3.t1"; gene_id "g_2"; +2L AUGUSTUS intron 26965 27052 1 - . transcript_id "anno2.2L-_file_1_file_1_g3.t1"; gene_id "g_2"; +2L AUGUSTUS CDS 27053 27490 1 - 1 transcript_id "anno2.2L-_file_1_file_1_g3.t1"; gene_id "g_2"; +2L AUGUSTUS exon 27053 27490 . - . transcript_id "anno2.2L-_file_1_file_1_g3.t1"; gene_id "g_2"; +2L AUGUSTUS intron 27491 28014 1 - . transcript_id "anno2.2L-_file_1_file_1_g3.t1"; gene_id "g_2"; +2L AUGUSTUS CDS 28015 28240 1 - 2 transcript_id "anno2.2L-_file_1_file_1_g3.t1"; gene_id "g_2"; +2L AUGUSTUS exon 28015 28240 . - . transcript_id "anno2.2L-_file_1_file_1_g3.t1"; gene_id "g_2"; +2L AUGUSTUS intron 28241 28732 1 - . transcript_id "anno2.2L-_file_1_file_1_g3.t1"; gene_id "g_2"; +2L AUGUSTUS CDS 28733 28926 1 - 1 transcript_id "anno2.2L-_file_1_file_1_g3.t1"; gene_id "g_2"; +2L AUGUSTUS exon 28733 28926 . - . transcript_id "anno2.2L-_file_1_file_1_g3.t1"; gene_id "g_2"; +2L AUGUSTUS intron 28927 28981 1 - . transcript_id "anno2.2L-_file_1_file_1_g3.t1"; gene_id "g_2"; +2L AUGUSTUS CDS 28982 29068 1 - 1 transcript_id "anno2.2L-_file_1_file_1_g3.t1"; gene_id "g_2"; +2L AUGUSTUS exon 28982 29068 . - . transcript_id "anno2.2L-_file_1_file_1_g3.t1"; gene_id "g_2"; +2L AUGUSTUS intron 29069 30393 1 - . transcript_id "anno2.2L-_file_1_file_1_g3.t1"; gene_id "g_2"; +2L AUGUSTUS CDS 30394 32043 0.3 - 1 transcript_id "anno2.2L-_file_1_file_1_g3.t1"; gene_id "g_2"; +2L AUGUSTUS exon 30394 32043 . - . transcript_id "anno2.2L-_file_1_file_1_g3.t1"; gene_id "g_2"; +2L AUGUSTUS intron 32044 32625 0.45 - . transcript_id "anno2.2L-_file_1_file_1_g3.t1"; gene_id "g_2"; +2L AUGUSTUS CDS 32626 33270 0.51 - 1 transcript_id "anno2.2L-_file_1_file_1_g3.t1"; gene_id "g_2"; +2L AUGUSTUS exon 32626 33270 . - . transcript_id "anno2.2L-_file_1_file_1_g3.t1"; gene_id "g_2"; +2L AUGUSTUS intron 33271 33844 1 - . transcript_id "anno2.2L-_file_1_file_1_g3.t1"; gene_id "g_2"; +2L AUGUSTUS CDS 33845 34288 1 - 1 transcript_id "anno2.2L-_file_1_file_1_g3.t1"; gene_id "g_2"; +2L AUGUSTUS exon 33845 34288 . - . transcript_id "anno2.2L-_file_1_file_1_g3.t1"; gene_id "g_2"; +2L AUGUSTUS intron 34289 34557 1 - . transcript_id "anno2.2L-_file_1_file_1_g3.t1"; gene_id "g_2"; +2L AUGUSTUS CDS 34558 34604 1 - 0 transcript_id "anno2.2L-_file_1_file_1_g3.t1"; gene_id "g_2"; +2L AUGUSTUS exon 34558 34604 . - . transcript_id "anno2.2L-_file_1_file_1_g3.t1"; gene_id "g_2"; +2L AUGUSTUS intron 34605 34719 1 - . transcript_id "anno2.2L-_file_1_file_1_g3.t1"; gene_id "g_2"; +2L AUGUSTUS CDS 34720 35212 1 - 1 transcript_id "anno2.2L-_file_1_file_1_g3.t1"; gene_id "g_2"; +2L AUGUSTUS exon 34720 35212 . - . transcript_id "anno2.2L-_file_1_file_1_g3.t1"; gene_id "g_2"; +2L AUGUSTUS intron 35213 35745 1 - . transcript_id "anno2.2L-_file_1_file_1_g3.t1"; gene_id "g_2"; +2L AUGUSTUS CDS 35746 38298 0.91 - 1 transcript_id "anno2.2L-_file_1_file_1_g3.t1"; gene_id "g_2"; +2L AUGUSTUS exon 35746 38298 . - . transcript_id "anno2.2L-_file_1_file_1_g3.t1"; gene_id "g_2"; +2L AUGUSTUS intron 38299 38534 1 - . transcript_id "anno2.2L-_file_1_file_1_g3.t1"; gene_id "g_2"; +2L AUGUSTUS CDS 38535 38731 1 - 0 transcript_id "anno2.2L-_file_1_file_1_g3.t1"; gene_id "g_2"; +2L AUGUSTUS exon 38535 38731 . - . transcript_id "anno2.2L-_file_1_file_1_g3.t1"; gene_id "g_2"; +2L AUGUSTUS intron 38732 39300 1 - . transcript_id "anno2.2L-_file_1_file_1_g3.t1"; gene_id "g_2"; +2L AUGUSTUS CDS 39301 39857 1 - 2 transcript_id "anno2.2L-_file_1_file_1_g3.t1"; gene_id "g_2"; +2L AUGUSTUS exon 39301 39857 . - . transcript_id "anno2.2L-_file_1_file_1_g3.t1"; gene_id "g_2"; +2L AUGUSTUS intron 39858 40756 0.63 - . transcript_id "anno2.2L-_file_1_file_1_g3.t1"; gene_id "g_2"; +2L AUGUSTUS CDS 40757 40784 0.63 - 0 transcript_id "anno2.2L-_file_1_file_1_g3.t1"; gene_id "g_2"; +2L AUGUSTUS exon 40757 40784 . - . transcript_id "anno2.2L-_file_1_file_1_g3.t1"; gene_id "g_2"; +2L AUGUSTUS start_codon 40782 40784 . - 0 transcript_id "anno2.2L-_file_1_file_1_g3.t1"; gene_id "g_2"; +2L AUGUSTUS transcript 26521 40784 . - . anno2.2L-_file_1_file_1_g3.t2 +2L AUGUSTUS stop_codon 26521 26523 . - 0 transcript_id "anno2.2L-_file_1_file_1_g3.t2"; gene_id "g_2"; +2L AUGUSTUS CDS 26521 26688 1 - 0 transcript_id "anno2.2L-_file_1_file_1_g3.t2"; gene_id "g_2"; +2L AUGUSTUS exon 26521 26688 . - . transcript_id "anno2.2L-_file_1_file_1_g3.t2"; gene_id "g_2"; +2L AUGUSTUS intron 26689 26765 1 - . transcript_id "anno2.2L-_file_1_file_1_g3.t2"; gene_id "g_2"; +2L AUGUSTUS CDS 26766 26964 1 - 1 transcript_id "anno2.2L-_file_1_file_1_g3.t2"; gene_id "g_2"; +2L AUGUSTUS exon 26766 26964 . - . transcript_id "anno2.2L-_file_1_file_1_g3.t2"; gene_id "g_2"; +2L AUGUSTUS intron 26965 27052 1 - . transcript_id "anno2.2L-_file_1_file_1_g3.t2"; gene_id "g_2"; +2L AUGUSTUS CDS 27053 27490 1 - 1 transcript_id "anno2.2L-_file_1_file_1_g3.t2"; gene_id "g_2"; +2L AUGUSTUS exon 27053 27490 . - . transcript_id "anno2.2L-_file_1_file_1_g3.t2"; gene_id "g_2"; +2L AUGUSTUS intron 27491 28014 1 - . transcript_id "anno2.2L-_file_1_file_1_g3.t2"; gene_id "g_2"; +2L AUGUSTUS CDS 28015 28240 0.99 - 2 transcript_id "anno2.2L-_file_1_file_1_g3.t2"; gene_id "g_2"; +2L AUGUSTUS exon 28015 28240 . - . transcript_id "anno2.2L-_file_1_file_1_g3.t2"; gene_id "g_2"; +2L AUGUSTUS intron 28241 28732 0.99 - . transcript_id "anno2.2L-_file_1_file_1_g3.t2"; gene_id "g_2"; +2L AUGUSTUS CDS 28733 28926 1 - 1 transcript_id "anno2.2L-_file_1_file_1_g3.t2"; gene_id "g_2"; +2L AUGUSTUS exon 28733 28926 . - . transcript_id "anno2.2L-_file_1_file_1_g3.t2"; gene_id "g_2"; +2L AUGUSTUS intron 28927 28981 1 - . transcript_id "anno2.2L-_file_1_file_1_g3.t2"; gene_id "g_2"; +2L AUGUSTUS CDS 28982 29068 1 - 1 transcript_id "anno2.2L-_file_1_file_1_g3.t2"; gene_id "g_2"; +2L AUGUSTUS exon 28982 29068 . - . transcript_id "anno2.2L-_file_1_file_1_g3.t2"; gene_id "g_2"; +2L AUGUSTUS intron 29069 30393 1 - . transcript_id "anno2.2L-_file_1_file_1_g3.t2"; gene_id "g_2"; +2L AUGUSTUS CDS 30394 32043 0.33 - 1 transcript_id "anno2.2L-_file_1_file_1_g3.t2"; gene_id "g_2"; +2L AUGUSTUS exon 30394 32043 . - . transcript_id "anno2.2L-_file_1_file_1_g3.t2"; gene_id "g_2"; +2L AUGUSTUS intron 32044 32625 0.51 - . transcript_id "anno2.2L-_file_1_file_1_g3.t2"; gene_id "g_2"; +2L AUGUSTUS CDS 32626 33270 0.57 - 1 transcript_id "anno2.2L-_file_1_file_1_g3.t2"; gene_id "g_2"; +2L AUGUSTUS exon 32626 33270 . - . transcript_id "anno2.2L-_file_1_file_1_g3.t2"; gene_id "g_2"; +2L AUGUSTUS intron 33271 33844 1 - . transcript_id "anno2.2L-_file_1_file_1_g3.t2"; gene_id "g_2"; +2L AUGUSTUS CDS 33845 34288 1 - 1 transcript_id "anno2.2L-_file_1_file_1_g3.t2"; gene_id "g_2"; +2L AUGUSTUS exon 33845 34288 . - . transcript_id "anno2.2L-_file_1_file_1_g3.t2"; gene_id "g_2"; +2L AUGUSTUS intron 34289 34557 1 - . transcript_id "anno2.2L-_file_1_file_1_g3.t2"; gene_id "g_2"; +2L AUGUSTUS CDS 34558 34604 1 - 0 transcript_id "anno2.2L-_file_1_file_1_g3.t2"; gene_id "g_2"; +2L AUGUSTUS exon 34558 34604 . - . transcript_id "anno2.2L-_file_1_file_1_g3.t2"; gene_id "g_2"; +2L AUGUSTUS intron 34605 34719 1 - . transcript_id "anno2.2L-_file_1_file_1_g3.t2"; gene_id "g_2"; +2L AUGUSTUS CDS 34720 34912 1 - 1 transcript_id "anno2.2L-_file_1_file_1_g3.t2"; gene_id "g_2"; +2L AUGUSTUS exon 34720 34912 . - . transcript_id "anno2.2L-_file_1_file_1_g3.t2"; gene_id "g_2"; +2L AUGUSTUS intron 34913 35745 1 - . transcript_id "anno2.2L-_file_1_file_1_g3.t2"; gene_id "g_2"; +2L AUGUSTUS CDS 35746 38298 0.95 - 1 transcript_id "anno2.2L-_file_1_file_1_g3.t2"; gene_id "g_2"; +2L AUGUSTUS exon 35746 38298 . - . transcript_id "anno2.2L-_file_1_file_1_g3.t2"; gene_id "g_2"; +2L AUGUSTUS intron 38299 38534 1 - . transcript_id "anno2.2L-_file_1_file_1_g3.t2"; gene_id "g_2"; +2L AUGUSTUS CDS 38535 38731 1 - 0 transcript_id "anno2.2L-_file_1_file_1_g3.t2"; gene_id "g_2"; +2L AUGUSTUS exon 38535 38731 . - . transcript_id "anno2.2L-_file_1_file_1_g3.t2"; gene_id "g_2"; +2L AUGUSTUS intron 38732 39300 1 - . transcript_id "anno2.2L-_file_1_file_1_g3.t2"; gene_id "g_2"; +2L AUGUSTUS CDS 39301 39857 0.98 - 2 transcript_id "anno2.2L-_file_1_file_1_g3.t2"; gene_id "g_2"; +2L AUGUSTUS exon 39301 39857 . - . transcript_id "anno2.2L-_file_1_file_1_g3.t2"; gene_id "g_2"; +2L AUGUSTUS intron 39858 40756 0.62 - . transcript_id "anno2.2L-_file_1_file_1_g3.t2"; gene_id "g_2"; +2L AUGUSTUS CDS 40757 40784 0.63 - 0 transcript_id "anno2.2L-_file_1_file_1_g3.t2"; gene_id "g_2"; +2L AUGUSTUS exon 40757 40784 . - . transcript_id "anno2.2L-_file_1_file_1_g3.t2"; gene_id "g_2"; +2L AUGUSTUS start_codon 40782 40784 . - 0 transcript_id "anno2.2L-_file_1_file_1_g3.t2"; gene_id "g_2"; +2L AUGUSTUS gene 67625 70895 . + . g_3 +2L AUGUSTUS transcript 67625 70895 . + . anno2.2L+_file_1_file_1_g4.t1 +2L AUGUSTUS start_codon 67625 67627 . + 0 transcript_id "anno2.2L+_file_1_file_1_g4.t1"; gene_id "g_3"; +2L AUGUSTUS CDS 67625 67762 1 + 0 transcript_id "anno2.2L+_file_1_file_1_g4.t1"; gene_id "g_3"; +2L AUGUSTUS exon 67625 67762 . + . transcript_id "anno2.2L+_file_1_file_1_g4.t1"; gene_id "g_3"; +2L AUGUSTUS intron 67763 67891 1 + . transcript_id "anno2.2L+_file_1_file_1_g4.t1"; gene_id "g_3"; +2L AUGUSTUS CDS 67892 68023 1 + 0 transcript_id "anno2.2L+_file_1_file_1_g4.t1"; gene_id "g_3"; +2L AUGUSTUS exon 67892 68023 . + . transcript_id "anno2.2L+_file_1_file_1_g4.t1"; gene_id "g_3"; +2L AUGUSTUS intron 68024 68084 1 + . transcript_id "anno2.2L+_file_1_file_1_g4.t1"; gene_id "g_3"; +2L AUGUSTUS CDS 68085 70549 0.91 + 0 transcript_id "anno2.2L+_file_1_file_1_g4.t1"; gene_id "g_3"; +2L AUGUSTUS exon 68085 70549 . + . transcript_id "anno2.2L+_file_1_file_1_g4.t1"; gene_id "g_3"; +2L AUGUSTUS intron 70550 70606 1 + . transcript_id "anno2.2L+_file_1_file_1_g4.t1"; gene_id "g_3"; +2L AUGUSTUS CDS 70607 70895 1 + 1 transcript_id "anno2.2L+_file_1_file_1_g4.t1"; gene_id "g_3"; +2L AUGUSTUS exon 70607 70895 . + . transcript_id "anno2.2L+_file_1_file_1_g4.t1"; gene_id "g_3"; +2L AUGUSTUS stop_codon 70893 70895 . + 0 transcript_id "anno2.2L+_file_1_file_1_g4.t1"; gene_id "g_3"; +2L AUGUSTUS gene 72792 77709 . + . g_4 +2L AUGUSTUS transcript 72792 77709 . + . anno1.2L+_file_1_file_1_g5331.t1 +2L AUGUSTUS start_codon 72792 72794 . + 0 transcript_id "anno1.2L+_file_1_file_1_g5331.t1"; gene_id "g_4"; +2L AUGUSTUS CDS 72792 72977 0.52 + 0 transcript_id "anno1.2L+_file_1_file_1_g5331.t1"; gene_id "g_4"; +2L AUGUSTUS exon 72792 72977 . + . transcript_id "anno1.2L+_file_1_file_1_g5331.t1"; gene_id "g_4"; +2L AUGUSTUS intron 72978 74902 1 + . transcript_id "anno1.2L+_file_1_file_1_g5331.t1"; gene_id "g_4"; +2L AUGUSTUS CDS 74903 75018 1 + 0 transcript_id "anno1.2L+_file_1_file_1_g5331.t1"; gene_id "g_4"; +2L AUGUSTUS exon 74903 75018 . + . transcript_id "anno1.2L+_file_1_file_1_g5331.t1"; gene_id "g_4"; +2L AUGUSTUS intron 75019 75077 1 + . transcript_id "anno1.2L+_file_1_file_1_g5331.t1"; gene_id "g_4"; +2L AUGUSTUS CDS 75078 75366 1 + 1 transcript_id "anno1.2L+_file_1_file_1_g5331.t1"; gene_id "g_4"; +2L AUGUSTUS exon 75078 75366 . + . transcript_id "anno1.2L+_file_1_file_1_g5331.t1"; gene_id "g_4"; +2L AUGUSTUS intron 75367 77480 0.99 + . transcript_id "anno1.2L+_file_1_file_1_g5331.t1"; gene_id "g_4"; +2L AUGUSTUS CDS 77481 77583 0.99 + 0 transcript_id "anno1.2L+_file_1_file_1_g5331.t1"; gene_id "g_4"; +2L AUGUSTUS exon 77481 77583 . + . transcript_id "anno1.2L+_file_1_file_1_g5331.t1"; gene_id "g_4"; +2L AUGUSTUS intron 77584 77641 0.99 + . transcript_id "anno1.2L+_file_1_file_1_g5331.t1"; gene_id "g_4"; +2L AUGUSTUS CDS 77642 77709 0.99 + 2 transcript_id "anno1.2L+_file_1_file_1_g5331.t1"; gene_id "g_4"; +2L AUGUSTUS exon 77642 77709 . + . transcript_id "anno1.2L+_file_1_file_1_g5331.t1"; gene_id "g_4"; +2L AUGUSTUS stop_codon 77707 77709 . + 0 transcript_id "anno1.2L+_file_1_file_1_g5331.t1"; gene_id "g_4"; +2L AUGUSTUS gene 83268 87107 . - . g_5 +2L AUGUSTUS transcript 83268 87026 . - . anno1.2L-_file_1_file_1_g5332.t1 +2L AUGUSTUS stop_codon 83268 83270 . - 0 transcript_id "anno1.2L-_file_1_file_1_g5332.t1"; gene_id "g_5"; +2L AUGUSTUS CDS 83268 84277 1 - 2 transcript_id "anno1.2L-_file_1_file_1_g5332.t1"; gene_id "g_5"; +2L AUGUSTUS exon 83268 84277 . - . transcript_id "anno1.2L-_file_1_file_1_g5332.t1"; gene_id "g_5"; +2L AUGUSTUS intron 84278 87019 1 - . transcript_id "anno1.2L-_file_1_file_1_g5332.t1"; gene_id "g_5"; +2L AUGUSTUS CDS 87020 87026 0.88 - 0 transcript_id "anno1.2L-_file_1_file_1_g5332.t1"; gene_id "g_5"; +2L AUGUSTUS exon 87020 87026 . - . transcript_id "anno1.2L-_file_1_file_1_g5332.t1"; gene_id "g_5"; +2L AUGUSTUS start_codon 87024 87026 . - 0 transcript_id "anno1.2L-_file_1_file_1_g5332.t1"; gene_id "g_5"; +2L AUGUSTUS transcript 83268 87107 . - . anno2.2L-_file_1_file_1_g6.t1 +2L AUGUSTUS stop_codon 83268 83270 . - 0 transcript_id "anno2.2L-_file_1_file_1_g6.t1"; gene_id "g_5"; +2L AUGUSTUS CDS 83268 84277 1 - 2 transcript_id "anno2.2L-_file_1_file_1_g6.t1"; gene_id "g_5"; +2L AUGUSTUS exon 83268 84277 . - . transcript_id "anno2.2L-_file_1_file_1_g6.t1"; gene_id "g_5"; +2L AUGUSTUS intron 84278 87019 1 - . transcript_id "anno2.2L-_file_1_file_1_g6.t1"; gene_id "g_5"; +2L AUGUSTUS CDS 87020 87107 0.9 - 0 transcript_id "anno2.2L-_file_1_file_1_g6.t1"; gene_id "g_5"; +2L AUGUSTUS exon 87020 87107 . - . transcript_id "anno2.2L-_file_1_file_1_g6.t1"; gene_id "g_5"; +2L AUGUSTUS start_codon 87105 87107 . - 0 transcript_id "anno2.2L-_file_1_file_1_g6.t1"; gene_id "g_5"; +2L AUGUSTUS gene 94852 97895 . + . g_6 +2L AUGUSTUS transcript 94852 97895 . + . anno1.2L+_file_1_file_1_g5333.t1 +2L AUGUSTUS start_codon 94852 94854 . + 0 transcript_id "anno1.2L+_file_1_file_1_g5333.t1"; gene_id "g_6"; +2L AUGUSTUS CDS 94852 94892 1 + 0 transcript_id "anno1.2L+_file_1_file_1_g5333.t1"; gene_id "g_6"; +2L AUGUSTUS exon 94852 94892 . + . transcript_id "anno1.2L+_file_1_file_1_g5333.t1"; gene_id "g_6"; +2L AUGUSTUS intron 94893 94988 1 + . transcript_id "anno1.2L+_file_1_file_1_g5333.t1"; gene_id "g_6"; +2L AUGUSTUS CDS 94989 95070 1 + 1 transcript_id "anno1.2L+_file_1_file_1_g5333.t1"; gene_id "g_6"; +2L AUGUSTUS exon 94989 95070 . + . transcript_id "anno1.2L+_file_1_file_1_g5333.t1"; gene_id "g_6"; +2L AUGUSTUS intron 95071 95131 1 + . transcript_id "anno1.2L+_file_1_file_1_g5333.t1"; gene_id "g_6"; +2L AUGUSTUS CDS 95132 95301 1 + 0 transcript_id "anno1.2L+_file_1_file_1_g5333.t1"; gene_id "g_6"; +2L AUGUSTUS exon 95132 95301 . + . transcript_id "anno1.2L+_file_1_file_1_g5333.t1"; gene_id "g_6"; +2L AUGUSTUS intron 95302 95353 1 + . transcript_id "anno1.2L+_file_1_file_1_g5333.t1"; gene_id "g_6"; +2L AUGUSTUS CDS 95354 95870 0.55 + 1 transcript_id "anno1.2L+_file_1_file_1_g5333.t1"; gene_id "g_6"; +2L AUGUSTUS exon 95354 95870 . + . transcript_id "anno1.2L+_file_1_file_1_g5333.t1"; gene_id "g_6"; +2L AUGUSTUS intron 95871 97806 0.55 + . transcript_id "anno1.2L+_file_1_file_1_g5333.t1"; gene_id "g_6"; +2L AUGUSTUS CDS 97807 97833 1 + 0 transcript_id "anno1.2L+_file_1_file_1_g5333.t1"; gene_id "g_6"; +2L AUGUSTUS exon 97807 97833 . + . transcript_id "anno1.2L+_file_1_file_1_g5333.t1"; gene_id "g_6"; +2L AUGUSTUS intron 97834 97883 1 + . transcript_id "anno1.2L+_file_1_file_1_g5333.t1"; gene_id "g_6"; +2L AUGUSTUS CDS 97884 97895 1 + 0 transcript_id "anno1.2L+_file_1_file_1_g5333.t1"; gene_id "g_6"; +2L AUGUSTUS exon 97884 97895 . + . transcript_id "anno1.2L+_file_1_file_1_g5333.t1"; gene_id "g_6"; +2L AUGUSTUS stop_codon 97893 97895 . + 0 transcript_id "anno1.2L+_file_1_file_1_g5333.t1"; gene_id "g_6"; +2L AUGUSTUS gene 102459 103763 . + . g_7 +2L AUGUSTUS transcript 102459 103763 . + . anno2.2L+_file_1_file_1_g7.t1 +2L AUGUSTUS start_codon 102459 102461 . + 0 transcript_id "anno2.2L+_file_1_file_1_g7.t1"; gene_id "g_7"; +2L AUGUSTUS CDS 102459 102906 1 + 0 transcript_id "anno2.2L+_file_1_file_1_g7.t1"; gene_id "g_7"; +2L AUGUSTUS exon 102459 102906 . + . transcript_id "anno2.2L+_file_1_file_1_g7.t1"; gene_id "g_7"; +2L AUGUSTUS intron 102907 103005 1 + . transcript_id "anno2.2L+_file_1_file_1_g7.t1"; gene_id "g_7"; +2L AUGUSTUS CDS 103006 103434 1 + 2 transcript_id "anno2.2L+_file_1_file_1_g7.t1"; gene_id "g_7"; +2L AUGUSTUS exon 103006 103434 . + . transcript_id "anno2.2L+_file_1_file_1_g7.t1"; gene_id "g_7"; +2L AUGUSTUS intron 103435 103515 1 + . transcript_id "anno2.2L+_file_1_file_1_g7.t1"; gene_id "g_7"; +2L AUGUSTUS CDS 103516 103763 1 + 2 transcript_id "anno2.2L+_file_1_file_1_g7.t1"; gene_id "g_7"; +2L AUGUSTUS exon 103516 103763 . + . transcript_id "anno2.2L+_file_1_file_1_g7.t1"; gene_id "g_7"; +2L AUGUSTUS stop_codon 103761 103763 . + 0 transcript_id "anno2.2L+_file_1_file_1_g7.t1"; gene_id "g_7"; +2L AUGUSTUS gene 104473 106642 . - . g_8 +2L AUGUSTUS transcript 104473 106642 . - . anno1.2L-_file_1_file_1_g5335.t1 +2L AUGUSTUS stop_codon 104473 104475 . - 0 transcript_id "anno1.2L-_file_1_file_1_g5335.t1"; gene_id "g_8"; +2L AUGUSTUS CDS 104473 104947 1 - 1 transcript_id "anno1.2L-_file_1_file_1_g5335.t1"; gene_id "g_8"; +2L AUGUSTUS exon 104473 104947 . - . transcript_id "anno1.2L-_file_1_file_1_g5335.t1"; gene_id "g_8"; +2L AUGUSTUS intron 104948 105004 1 - . transcript_id "anno1.2L-_file_1_file_1_g5335.t1"; gene_id "g_8"; +2L AUGUSTUS CDS 105005 105336 0.97 - 0 transcript_id "anno1.2L-_file_1_file_1_g5335.t1"; gene_id "g_8"; +2L AUGUSTUS exon 105005 105336 . - . transcript_id "anno1.2L-_file_1_file_1_g5335.t1"; gene_id "g_8"; +2L AUGUSTUS intron 105337 105390 1 - . transcript_id "anno1.2L-_file_1_file_1_g5335.t1"; gene_id "g_8"; +2L AUGUSTUS CDS 105391 105455 1 - 2 transcript_id "anno1.2L-_file_1_file_1_g5335.t1"; gene_id "g_8"; +2L AUGUSTUS exon 105391 105455 . - . transcript_id "anno1.2L-_file_1_file_1_g5335.t1"; gene_id "g_8"; +2L AUGUSTUS intron 105456 105511 1 - . transcript_id "anno1.2L-_file_1_file_1_g5335.t1"; gene_id "g_8"; +2L AUGUSTUS CDS 105512 105915 1 - 1 transcript_id "anno1.2L-_file_1_file_1_g5335.t1"; gene_id "g_8"; +2L AUGUSTUS exon 105512 105915 . - . transcript_id "anno1.2L-_file_1_file_1_g5335.t1"; gene_id "g_8"; +2L AUGUSTUS intron 105916 105968 1 - . transcript_id "anno1.2L-_file_1_file_1_g5335.t1"; gene_id "g_8"; +2L AUGUSTUS CDS 105969 106642 1 - 0 transcript_id "anno1.2L-_file_1_file_1_g5335.t1"; gene_id "g_8"; +2L AUGUSTUS exon 105969 106642 . - . transcript_id "anno1.2L-_file_1_file_1_g5335.t1"; gene_id "g_8"; +2L AUGUSTUS start_codon 106640 106642 . - 0 transcript_id "anno1.2L-_file_1_file_1_g5335.t1"; gene_id "g_8"; +2L AUGUSTUS gene 108686 113542 . + . g_9 +2L AUGUSTUS transcript 108686 113542 . + . anno1.2L+_file_1_file_1_g5336.t2 +2L AUGUSTUS start_codon 108686 108688 . + 0 transcript_id "anno1.2L+_file_1_file_1_g5336.t2"; gene_id "g_9"; +2L AUGUSTUS CDS 108686 108809 1 + 0 transcript_id "anno1.2L+_file_1_file_1_g5336.t2"; gene_id "g_9"; +2L AUGUSTUS exon 108686 108809 . + . transcript_id "anno1.2L+_file_1_file_1_g5336.t2"; gene_id "g_9"; +2L AUGUSTUS intron 108810 110405 1 + . transcript_id "anno1.2L+_file_1_file_1_g5336.t2"; gene_id "g_9"; +2L AUGUSTUS CDS 110406 110483 1 + 2 transcript_id "anno1.2L+_file_1_file_1_g5336.t2"; gene_id "g_9"; +2L AUGUSTUS exon 110406 110483 . + . transcript_id "anno1.2L+_file_1_file_1_g5336.t2"; gene_id "g_9"; +2L AUGUSTUS intron 110484 110754 1 + . transcript_id "anno1.2L+_file_1_file_1_g5336.t2"; gene_id "g_9"; +2L AUGUSTUS CDS 110755 110877 1 + 2 transcript_id "anno1.2L+_file_1_file_1_g5336.t2"; gene_id "g_9"; +2L AUGUSTUS exon 110755 110877 . + . transcript_id "anno1.2L+_file_1_file_1_g5336.t2"; gene_id "g_9"; +2L AUGUSTUS intron 110878 111906 1 + . transcript_id "anno1.2L+_file_1_file_1_g5336.t2"; gene_id "g_9"; +2L AUGUSTUS CDS 111907 112019 1 + 2 transcript_id "anno1.2L+_file_1_file_1_g5336.t2"; gene_id "g_9"; +2L AUGUSTUS exon 111907 112019 . + . transcript_id "anno1.2L+_file_1_file_1_g5336.t2"; gene_id "g_9"; +2L AUGUSTUS intron 112020 112689 1 + . transcript_id "anno1.2L+_file_1_file_1_g5336.t2"; gene_id "g_9"; +2L AUGUSTUS CDS 112690 113369 1 + 0 transcript_id "anno1.2L+_file_1_file_1_g5336.t2"; gene_id "g_9"; +2L AUGUSTUS exon 112690 113369 . + . transcript_id "anno1.2L+_file_1_file_1_g5336.t2"; gene_id "g_9"; +2L AUGUSTUS intron 113370 113433 1 + . transcript_id "anno1.2L+_file_1_file_1_g5336.t2"; gene_id "g_9"; +2L AUGUSTUS CDS 113434 113542 1 + 1 transcript_id "anno1.2L+_file_1_file_1_g5336.t2"; gene_id "g_9"; +2L AUGUSTUS exon 113434 113542 . + . transcript_id "anno1.2L+_file_1_file_1_g5336.t2"; gene_id "g_9"; +2L AUGUSTUS stop_codon 113540 113542 . + 0 transcript_id "anno1.2L+_file_1_file_1_g5336.t2"; gene_id "g_9"; +2L AUGUSTUS gene 115713 116150 . - . g_42 +2L AUGUSTUS transcript 115713 116150 . - . anno2.2L-_file_1_file_1_g10.t1 +2L AUGUSTUS stop_codon 115713 115715 . - 0 transcript_id "anno2.2L-_file_1_file_1_g10.t1"; gene_id "g_42"; +2L AUGUSTUS CDS 115713 116150 1 - 0 transcript_id "anno2.2L-_file_1_file_1_g10.t1"; gene_id "g_42"; +2L AUGUSTUS exon 115713 116150 . - . transcript_id "anno2.2L-_file_1_file_1_g10.t1"; gene_id "g_42"; +2L AUGUSTUS start_codon 116148 116150 . - 0 transcript_id "anno2.2L-_file_1_file_1_g10.t1"; gene_id "g_42"; +2L AUGUSTUS transcript 115713 116117 . - . anno2.2L-_file_1_file_1_g10.t2 +2L AUGUSTUS stop_codon 115713 115715 . - 0 transcript_id "anno2.2L-_file_1_file_1_g10.t2"; gene_id "g_42"; +2L AUGUSTUS CDS 115713 116117 0.63 - 0 transcript_id "anno2.2L-_file_1_file_1_g10.t2"; gene_id "g_42"; +2L AUGUSTUS exon 115713 116117 . - . transcript_id "anno2.2L-_file_1_file_1_g10.t2"; gene_id "g_42"; +2L AUGUSTUS start_codon 116115 116117 . - 0 transcript_id "anno2.2L-_file_1_file_1_g10.t2"; gene_id "g_42"; +2L AUGUSTUS gene 117331 120032 . - . g_10 +2L AUGUSTUS transcript 117331 120032 . - . anno2.2L-_file_1_file_1_g11.t1 +2L AUGUSTUS stop_codon 117331 117333 . - 0 transcript_id "anno2.2L-_file_1_file_1_g11.t1"; gene_id "g_10"; +2L AUGUSTUS CDS 117331 117759 1 - 0 transcript_id "anno2.2L-_file_1_file_1_g11.t1"; gene_id "g_10"; +2L AUGUSTUS exon 117331 117759 . - . transcript_id "anno2.2L-_file_1_file_1_g11.t1"; gene_id "g_10"; +2L AUGUSTUS intron 117760 117819 1 - . transcript_id "anno2.2L-_file_1_file_1_g11.t1"; gene_id "g_10"; +2L AUGUSTUS CDS 117820 118076 1 - 2 transcript_id "anno2.2L-_file_1_file_1_g11.t1"; gene_id "g_10"; +2L AUGUSTUS exon 117820 118076 . - . transcript_id "anno2.2L-_file_1_file_1_g11.t1"; gene_id "g_10"; +2L AUGUSTUS intron 118077 118135 1 - . transcript_id "anno2.2L-_file_1_file_1_g11.t1"; gene_id "g_10"; +2L AUGUSTUS CDS 118136 118304 1 - 0 transcript_id "anno2.2L-_file_1_file_1_g11.t1"; gene_id "g_10"; +2L AUGUSTUS exon 118136 118304 . - . transcript_id "anno2.2L-_file_1_file_1_g11.t1"; gene_id "g_10"; +2L AUGUSTUS intron 118305 118360 1 - . transcript_id "anno2.2L-_file_1_file_1_g11.t1"; gene_id "g_10"; +2L AUGUSTUS CDS 118361 118874 1 - 1 transcript_id "anno2.2L-_file_1_file_1_g11.t1"; gene_id "g_10"; +2L AUGUSTUS exon 118361 118874 . - . transcript_id "anno2.2L-_file_1_file_1_g11.t1"; gene_id "g_10"; +2L AUGUSTUS intron 118875 118930 1 - . transcript_id "anno2.2L-_file_1_file_1_g11.t1"; gene_id "g_10"; +2L AUGUSTUS CDS 118931 119076 1 - 0 transcript_id "anno2.2L-_file_1_file_1_g11.t1"; gene_id "g_10"; +2L AUGUSTUS exon 118931 119076 . - . transcript_id "anno2.2L-_file_1_file_1_g11.t1"; gene_id "g_10"; +2L AUGUSTUS intron 119077 119133 1 - . transcript_id "anno2.2L-_file_1_file_1_g11.t1"; gene_id "g_10"; +2L AUGUSTUS CDS 119134 119235 1 - 0 transcript_id "anno2.2L-_file_1_file_1_g11.t1"; gene_id "g_10"; +2L AUGUSTUS exon 119134 119235 . - . transcript_id "anno2.2L-_file_1_file_1_g11.t1"; gene_id "g_10"; +2L AUGUSTUS intron 119236 119287 1 - . transcript_id "anno2.2L-_file_1_file_1_g11.t1"; gene_id "g_10"; +2L AUGUSTUS CDS 119288 119375 1 - 1 transcript_id "anno2.2L-_file_1_file_1_g11.t1"; gene_id "g_10"; +2L AUGUSTUS exon 119288 119375 . - . transcript_id "anno2.2L-_file_1_file_1_g11.t1"; gene_id "g_10"; +2L AUGUSTUS intron 119376 119430 1 - . transcript_id "anno2.2L-_file_1_file_1_g11.t1"; gene_id "g_10"; +2L AUGUSTUS CDS 119431 119554 1 - 2 transcript_id "anno2.2L-_file_1_file_1_g11.t1"; gene_id "g_10"; +2L AUGUSTUS exon 119431 119554 . - . transcript_id "anno2.2L-_file_1_file_1_g11.t1"; gene_id "g_10"; +2L AUGUSTUS intron 119555 119827 1 - . transcript_id "anno2.2L-_file_1_file_1_g11.t1"; gene_id "g_10"; +2L AUGUSTUS CDS 119828 120032 1 - 0 transcript_id "anno2.2L-_file_1_file_1_g11.t1"; gene_id "g_10"; +2L AUGUSTUS exon 119828 120032 . - . transcript_id "anno2.2L-_file_1_file_1_g11.t1"; gene_id "g_10"; +2L AUGUSTUS start_codon 120030 120032 . - 0 transcript_id "anno2.2L-_file_1_file_1_g11.t1"; gene_id "g_10"; +2L AUGUSTUS gene 123129 128983 . - . g_11 +2L AUGUSTUS transcript 123129 128983 . - . anno2.2L-_file_1_file_1_g12.t1 +2L AUGUSTUS stop_codon 123129 123131 . - 0 transcript_id "anno2.2L-_file_1_file_1_g12.t1"; gene_id "g_11"; +2L AUGUSTUS CDS 123129 123629 1 - 0 transcript_id "anno2.2L-_file_1_file_1_g12.t1"; gene_id "g_11"; +2L AUGUSTUS exon 123129 123629 . - . transcript_id "anno2.2L-_file_1_file_1_g12.t1"; gene_id "g_11"; +2L AUGUSTUS intron 123630 123693 1 - . transcript_id "anno2.2L-_file_1_file_1_g12.t1"; gene_id "g_11"; +2L AUGUSTUS CDS 123694 123794 1 - 2 transcript_id "anno2.2L-_file_1_file_1_g12.t1"; gene_id "g_11"; +2L AUGUSTUS exon 123694 123794 . - . transcript_id "anno2.2L-_file_1_file_1_g12.t1"; gene_id "g_11"; +2L AUGUSTUS intron 123795 123855 1 - . transcript_id "anno2.2L-_file_1_file_1_g12.t1"; gene_id "g_11"; +2L AUGUSTUS CDS 123856 124024 1 - 0 transcript_id "anno2.2L-_file_1_file_1_g12.t1"; gene_id "g_11"; +2L AUGUSTUS exon 123856 124024 . - . transcript_id "anno2.2L-_file_1_file_1_g12.t1"; gene_id "g_11"; +2L AUGUSTUS intron 124025 124086 1 - . transcript_id "anno2.2L-_file_1_file_1_g12.t1"; gene_id "g_11"; +2L AUGUSTUS CDS 124087 124920 1 - 0 transcript_id "anno2.2L-_file_1_file_1_g12.t1"; gene_id "g_11"; +2L AUGUSTUS exon 124087 124920 . - . transcript_id "anno2.2L-_file_1_file_1_g12.t1"; gene_id "g_11"; +2L AUGUSTUS intron 124921 125076 1 - . transcript_id "anno2.2L-_file_1_file_1_g12.t1"; gene_id "g_11"; +2L AUGUSTUS CDS 125077 125266 1 - 1 transcript_id "anno2.2L-_file_1_file_1_g12.t1"; gene_id "g_11"; +2L AUGUSTUS exon 125077 125266 . - . transcript_id "anno2.2L-_file_1_file_1_g12.t1"; gene_id "g_11"; +2L AUGUSTUS intron 125267 126109 1 - . transcript_id "anno2.2L-_file_1_file_1_g12.t1"; gene_id "g_11"; +2L AUGUSTUS CDS 126110 126227 1 - 2 transcript_id "anno2.2L-_file_1_file_1_g12.t1"; gene_id "g_11"; +2L AUGUSTUS exon 126110 126227 . - . transcript_id "anno2.2L-_file_1_file_1_g12.t1"; gene_id "g_11"; +2L AUGUSTUS intron 126228 128799 1 - . transcript_id "anno2.2L-_file_1_file_1_g12.t1"; gene_id "g_11"; +2L AUGUSTUS CDS 128800 128983 1 - 0 transcript_id "anno2.2L-_file_1_file_1_g12.t1"; gene_id "g_11"; +2L AUGUSTUS exon 128800 128983 . - . transcript_id "anno2.2L-_file_1_file_1_g12.t1"; gene_id "g_11"; +2L AUGUSTUS start_codon 128981 128983 . - 0 transcript_id "anno2.2L-_file_1_file_1_g12.t1"; gene_id "g_11"; +2L AUGUSTUS gene 132483 133682 . + . g_43 +2L AUGUSTUS transcript 132483 133682 . + . anno2.2L+_file_1_file_1_g13.t1 +2L AUGUSTUS start_codon 132483 132485 . + 0 transcript_id "anno2.2L+_file_1_file_1_g13.t1"; gene_id "g_43"; +2L AUGUSTUS CDS 132483 133682 1 + 0 transcript_id "anno2.2L+_file_1_file_1_g13.t1"; gene_id "g_43"; +2L AUGUSTUS exon 132483 133682 . + . transcript_id "anno2.2L+_file_1_file_1_g13.t1"; gene_id "g_43"; +2L AUGUSTUS stop_codon 133680 133682 . + 0 transcript_id "anno2.2L+_file_1_file_1_g13.t1"; gene_id "g_43"; +2L AUGUSTUS gene 138695 139336 . - . g_12 +2L AUGUSTUS transcript 138695 139336 . - . anno1.2L-_file_1_file_1_g5339.t1 +2L AUGUSTUS stop_codon 138695 138697 . - 0 transcript_id "anno1.2L-_file_1_file_1_g5339.t1"; gene_id "g_12"; +2L AUGUSTUS CDS 138695 139198 1 - 0 transcript_id "anno1.2L-_file_1_file_1_g5339.t1"; gene_id "g_12"; +2L AUGUSTUS exon 138695 139198 . - . transcript_id "anno1.2L-_file_1_file_1_g5339.t1"; gene_id "g_12"; +2L AUGUSTUS intron 139199 139255 1 - . transcript_id "anno1.2L-_file_1_file_1_g5339.t1"; gene_id "g_12"; +2L AUGUSTUS CDS 139256 139336 1 - 0 transcript_id "anno1.2L-_file_1_file_1_g5339.t1"; gene_id "g_12"; +2L AUGUSTUS exon 139256 139336 . - . transcript_id "anno1.2L-_file_1_file_1_g5339.t1"; gene_id "g_12"; +2L AUGUSTUS start_codon 139334 139336 . - 0 transcript_id "anno1.2L-_file_1_file_1_g5339.t1"; gene_id "g_12"; +2L AUGUSTUS gene 139471 142487 . - . g_13 +2L AUGUSTUS transcript 139471 140933 . - . anno2.2L-_file_1_file_1_g15.t1 +2L AUGUSTUS stop_codon 139471 139473 . - 0 transcript_id "anno2.2L-_file_1_file_1_g15.t1"; gene_id "g_13"; +2L AUGUSTUS CDS 139471 139687 1 - 1 transcript_id "anno2.2L-_file_1_file_1_g15.t1"; gene_id "g_13"; +2L AUGUSTUS exon 139471 139687 . - . transcript_id "anno2.2L-_file_1_file_1_g15.t1"; gene_id "g_13"; +2L AUGUSTUS intron 139688 139740 1 - . transcript_id "anno2.2L-_file_1_file_1_g15.t1"; gene_id "g_13"; +2L AUGUSTUS CDS 139741 139954 1 - 2 transcript_id "anno2.2L-_file_1_file_1_g15.t1"; gene_id "g_13"; +2L AUGUSTUS exon 139741 139954 . - . transcript_id "anno2.2L-_file_1_file_1_g15.t1"; gene_id "g_13"; +2L AUGUSTUS intron 139955 140113 1 - . transcript_id "anno2.2L-_file_1_file_1_g15.t1"; gene_id "g_13"; +2L AUGUSTUS CDS 140114 140933 1 - 0 transcript_id "anno2.2L-_file_1_file_1_g15.t1"; gene_id "g_13"; +2L AUGUSTUS exon 140114 140933 . - . transcript_id "anno2.2L-_file_1_file_1_g15.t1"; gene_id "g_13"; +2L AUGUSTUS start_codon 140931 140933 . - 0 transcript_id "anno2.2L-_file_1_file_1_g15.t1"; gene_id "g_13"; +2L AUGUSTUS transcript 141130 142487 . - . anno2.2L-_file_1_file_1_g16.t1 +2L AUGUSTUS stop_codon 141130 141132 . - 0 transcript_id "anno2.2L-_file_1_file_1_g16.t1"; gene_id "g_13"; +2L AUGUSTUS CDS 141130 141340 1 - 1 transcript_id "anno2.2L-_file_1_file_1_g16.t1"; gene_id "g_13"; +2L AUGUSTUS exon 141130 141340 . - . transcript_id "anno2.2L-_file_1_file_1_g16.t1"; gene_id "g_13"; +2L AUGUSTUS intron 141341 141395 1 - . transcript_id "anno2.2L-_file_1_file_1_g16.t1"; gene_id "g_13"; +2L AUGUSTUS CDS 141396 141609 1 - 2 transcript_id "anno2.2L-_file_1_file_1_g16.t1"; gene_id "g_13"; +2L AUGUSTUS exon 141396 141609 . - . transcript_id "anno2.2L-_file_1_file_1_g16.t1"; gene_id "g_13"; +2L AUGUSTUS intron 141610 141670 1 - . transcript_id "anno2.2L-_file_1_file_1_g16.t1"; gene_id "g_13"; +2L AUGUSTUS CDS 141671 142487 1 - 0 transcript_id "anno2.2L-_file_1_file_1_g16.t1"; gene_id "g_13"; +2L AUGUSTUS exon 141671 142487 . - . transcript_id "anno2.2L-_file_1_file_1_g16.t1"; gene_id "g_13"; +2L AUGUSTUS start_codon 142485 142487 . - 0 transcript_id "anno2.2L-_file_1_file_1_g16.t1"; gene_id "g_13"; +2L AUGUSTUS gene 143378 144094 . + . g_14 +2L AUGUSTUS transcript 143378 144094 . + . anno2.2L+_file_1_file_1_g17.t1 +2L AUGUSTUS start_codon 143378 143380 . + 0 transcript_id "anno2.2L+_file_1_file_1_g17.t1"; gene_id "g_14"; +2L AUGUSTUS CDS 143378 144094 1 + 0 transcript_id "anno2.2L+_file_1_file_1_g17.t1"; gene_id "g_14"; +2L AUGUSTUS exon 143378 144094 . + . transcript_id "anno2.2L+_file_1_file_1_g17.t1"; gene_id "g_14"; +2L AUGUSTUS stop_codon 144092 144094 . + 0 transcript_id "anno2.2L+_file_1_file_1_g17.t1"; gene_id "g_14"; +2L AUGUSTUS gene 144374 153106 . - . g_15 +2L AUGUSTUS transcript 144374 153106 . - . anno1.2L-_file_1_file_1_g5342.t1 +2L AUGUSTUS stop_codon 144374 144376 . - 0 transcript_id "anno1.2L-_file_1_file_1_g5342.t1"; gene_id "g_15"; +2L AUGUSTUS CDS 144374 145910 0.93 - 1 transcript_id "anno1.2L-_file_1_file_1_g5342.t1"; gene_id "g_15"; +2L AUGUSTUS exon 144374 145910 . - . transcript_id "anno1.2L-_file_1_file_1_g5342.t1"; gene_id "g_15"; +2L AUGUSTUS intron 145911 147348 1 - . transcript_id "anno1.2L-_file_1_file_1_g5342.t1"; gene_id "g_15"; +2L AUGUSTUS CDS 147349 147454 1 - 2 transcript_id "anno1.2L-_file_1_file_1_g5342.t1"; gene_id "g_15"; +2L AUGUSTUS exon 147349 147454 . - . transcript_id "anno1.2L-_file_1_file_1_g5342.t1"; gene_id "g_15"; +2L AUGUSTUS intron 147455 147510 1 - . transcript_id "anno1.2L-_file_1_file_1_g5342.t1"; gene_id "g_15"; +2L AUGUSTUS CDS 147511 147710 1 - 1 transcript_id "anno1.2L-_file_1_file_1_g5342.t1"; gene_id "g_15"; +2L AUGUSTUS exon 147511 147710 . - . transcript_id "anno1.2L-_file_1_file_1_g5342.t1"; gene_id "g_15"; +2L AUGUSTUS intron 147711 147764 1 - . transcript_id "anno1.2L-_file_1_file_1_g5342.t1"; gene_id "g_15"; +2L AUGUSTUS CDS 147765 147936 1 - 2 transcript_id "anno1.2L-_file_1_file_1_g5342.t1"; gene_id "g_15"; +2L AUGUSTUS exon 147765 147936 . - . transcript_id "anno1.2L-_file_1_file_1_g5342.t1"; gene_id "g_15"; +2L AUGUSTUS intron 147937 147994 1 - . transcript_id "anno1.2L-_file_1_file_1_g5342.t1"; gene_id "g_15"; +2L AUGUSTUS CDS 147995 148037 1 - 0 transcript_id "anno1.2L-_file_1_file_1_g5342.t1"; gene_id "g_15"; +2L AUGUSTUS exon 147995 148037 . - . transcript_id "anno1.2L-_file_1_file_1_g5342.t1"; gene_id "g_15"; +2L AUGUSTUS intron 148038 148091 1 - . transcript_id "anno1.2L-_file_1_file_1_g5342.t1"; gene_id "g_15"; +2L AUGUSTUS CDS 148092 148173 1 - 1 transcript_id "anno1.2L-_file_1_file_1_g5342.t1"; gene_id "g_15"; +2L AUGUSTUS exon 148092 148173 . - . transcript_id "anno1.2L-_file_1_file_1_g5342.t1"; gene_id "g_15"; +2L AUGUSTUS intron 148174 148337 1 - . transcript_id "anno1.2L-_file_1_file_1_g5342.t1"; gene_id "g_15"; +2L AUGUSTUS CDS 148338 148825 1 - 0 transcript_id "anno1.2L-_file_1_file_1_g5342.t1"; gene_id "g_15"; +2L AUGUSTUS exon 148338 148825 . - . transcript_id "anno1.2L-_file_1_file_1_g5342.t1"; gene_id "g_15"; +2L AUGUSTUS intron 148826 148878 1 - . transcript_id "anno1.2L-_file_1_file_1_g5342.t1"; gene_id "g_15"; +2L AUGUSTUS CDS 148879 149226 1 - 0 transcript_id "anno1.2L-_file_1_file_1_g5342.t1"; gene_id "g_15"; +2L AUGUSTUS exon 148879 149226 . - . transcript_id "anno1.2L-_file_1_file_1_g5342.t1"; gene_id "g_15"; +2L AUGUSTUS intron 149227 151114 1 - . transcript_id "anno1.2L-_file_1_file_1_g5342.t1"; gene_id "g_15"; +2L AUGUSTUS CDS 151115 153106 0.54 - 0 transcript_id "anno1.2L-_file_1_file_1_g5342.t1"; gene_id "g_15"; +2L AUGUSTUS exon 151115 153106 . - . transcript_id "anno1.2L-_file_1_file_1_g5342.t1"; gene_id "g_15"; +2L AUGUSTUS start_codon 153104 153106 . - 0 transcript_id "anno1.2L-_file_1_file_1_g5342.t1"; gene_id "g_15"; +2L AUGUSTUS gene 153677 155247 . - . g_16 +2L AUGUSTUS transcript 153677 155247 . - . anno1.2L-_file_1_file_1_g5343.t1 +2L AUGUSTUS stop_codon 153677 153679 . - 0 transcript_id "anno1.2L-_file_1_file_1_g5343.t1"; gene_id "g_16"; +2L AUGUSTUS CDS 153677 155059 0.46 - 0 transcript_id "anno1.2L-_file_1_file_1_g5343.t1"; gene_id "g_16"; +2L AUGUSTUS exon 153677 155059 . - . transcript_id "anno1.2L-_file_1_file_1_g5343.t1"; gene_id "g_16"; +2L AUGUSTUS intron 155060 155127 1 - . transcript_id "anno1.2L-_file_1_file_1_g5343.t1"; gene_id "g_16"; +2L AUGUSTUS CDS 155128 155247 1 - 0 transcript_id "anno1.2L-_file_1_file_1_g5343.t1"; gene_id "g_16"; +2L AUGUSTUS exon 155128 155247 . - . transcript_id "anno1.2L-_file_1_file_1_g5343.t1"; gene_id "g_16"; +2L AUGUSTUS start_codon 155245 155247 . - 0 transcript_id "anno1.2L-_file_1_file_1_g5343.t1"; gene_id "g_16"; +2L AUGUSTUS gene 155572 155950 . + . g_17 +2L AUGUSTUS transcript 155572 155950 . + . anno1.2L+_file_1_file_1_g5344.t1 +2L AUGUSTUS start_codon 155572 155574 . + 0 transcript_id "anno1.2L+_file_1_file_1_g5344.t1"; gene_id "g_17"; +2L AUGUSTUS CDS 155572 155784 1 + 0 transcript_id "anno1.2L+_file_1_file_1_g5344.t1"; gene_id "g_17"; +2L AUGUSTUS exon 155572 155784 . + . transcript_id "anno1.2L+_file_1_file_1_g5344.t1"; gene_id "g_17"; +2L AUGUSTUS intron 155785 155857 1 + . transcript_id "anno1.2L+_file_1_file_1_g5344.t1"; gene_id "g_17"; +2L AUGUSTUS CDS 155858 155950 0.99 + 0 transcript_id "anno1.2L+_file_1_file_1_g5344.t1"; gene_id "g_17"; +2L AUGUSTUS exon 155858 155950 . + . transcript_id "anno1.2L+_file_1_file_1_g5344.t1"; gene_id "g_17"; +2L AUGUSTUS stop_codon 155948 155950 . + 0 transcript_id "anno1.2L+_file_1_file_1_g5344.t1"; gene_id "g_17"; +2L AUGUSTUS gene 156241 157541 . + . g_18 +2L AUGUSTUS transcript 156241 157541 . + . anno1.2L+_file_1_file_1_g5345.t1 +2L AUGUSTUS start_codon 156241 156243 . + 0 transcript_id "anno1.2L+_file_1_file_1_g5345.t1"; gene_id "g_18"; +2L AUGUSTUS CDS 156241 156348 0.97 + 0 transcript_id "anno1.2L+_file_1_file_1_g5345.t1"; gene_id "g_18"; +2L AUGUSTUS exon 156241 156348 . + . transcript_id "anno1.2L+_file_1_file_1_g5345.t1"; gene_id "g_18"; +2L AUGUSTUS intron 156349 156422 1 + . transcript_id "anno1.2L+_file_1_file_1_g5345.t1"; gene_id "g_18"; +2L AUGUSTUS CDS 156423 156552 1 + 0 transcript_id "anno1.2L+_file_1_file_1_g5345.t1"; gene_id "g_18"; +2L AUGUSTUS exon 156423 156552 . + . transcript_id "anno1.2L+_file_1_file_1_g5345.t1"; gene_id "g_18"; +2L AUGUSTUS intron 156553 156735 1 + . transcript_id "anno1.2L+_file_1_file_1_g5345.t1"; gene_id "g_18"; +2L AUGUSTUS CDS 156736 157541 1 + 2 transcript_id "anno1.2L+_file_1_file_1_g5345.t1"; gene_id "g_18"; +2L AUGUSTUS exon 156736 157541 . + . transcript_id "anno1.2L+_file_1_file_1_g5345.t1"; gene_id "g_18"; +2L AUGUSTUS stop_codon 157539 157541 . + 0 transcript_id "anno1.2L+_file_1_file_1_g5345.t1"; gene_id "g_18"; +2L AUGUSTUS gene 157944 158603 . - . g_19 +2L AUGUSTUS transcript 157944 158603 . - . anno1.2L-_file_1_file_1_g5346.t1 +2L AUGUSTUS stop_codon 157944 157946 . - 0 transcript_id "anno1.2L-_file_1_file_1_g5346.t1"; gene_id "g_19"; +2L AUGUSTUS CDS 157944 158375 1 - 0 transcript_id "anno1.2L-_file_1_file_1_g5346.t1"; gene_id "g_19"; +2L AUGUSTUS exon 157944 158375 . - . transcript_id "anno1.2L-_file_1_file_1_g5346.t1"; gene_id "g_19"; +2L AUGUSTUS intron 158376 158435 1 - . transcript_id "anno1.2L-_file_1_file_1_g5346.t1"; gene_id "g_19"; +2L AUGUSTUS CDS 158436 158603 1 - 0 transcript_id "anno1.2L-_file_1_file_1_g5346.t1"; gene_id "g_19"; +2L AUGUSTUS exon 158436 158603 . - . transcript_id "anno1.2L-_file_1_file_1_g5346.t1"; gene_id "g_19"; +2L AUGUSTUS start_codon 158601 158603 . - 0 transcript_id "anno1.2L-_file_1_file_1_g5346.t1"; gene_id "g_19"; +2L AUGUSTUS gene 175434 201414 . + . g_20 +2L AUGUSTUS transcript 175434 201414 . + . anno1.2L+_file_1_file_1_g5347.t1 +2L AUGUSTUS start_codon 175434 175436 . + 0 transcript_id "anno1.2L+_file_1_file_1_g5347.t1"; gene_id "g_20"; +2L AUGUSTUS CDS 175434 175447 0.99 + 0 transcript_id "anno1.2L+_file_1_file_1_g5347.t1"; gene_id "g_20"; +2L AUGUSTUS exon 175434 175447 . + . transcript_id "anno1.2L+_file_1_file_1_g5347.t1"; gene_id "g_20"; +2L AUGUSTUS intron 175448 183760 0.99 + . transcript_id "anno1.2L+_file_1_file_1_g5347.t1"; gene_id "g_20"; +2L AUGUSTUS CDS 183761 185082 0.85 + 1 transcript_id "anno1.2L+_file_1_file_1_g5347.t1"; gene_id "g_20"; +2L AUGUSTUS exon 183761 185082 . + . transcript_id "anno1.2L+_file_1_file_1_g5347.t1"; gene_id "g_20"; +2L AUGUSTUS intron 185083 185151 1 + . transcript_id "anno1.2L+_file_1_file_1_g5347.t1"; gene_id "g_20"; +2L AUGUSTUS CDS 185152 186123 0.8 + 2 transcript_id "anno1.2L+_file_1_file_1_g5347.t1"; gene_id "g_20"; +2L AUGUSTUS exon 185152 186123 . + . transcript_id "anno1.2L+_file_1_file_1_g5347.t1"; gene_id "g_20"; +2L AUGUSTUS intron 186124 186192 1 + . transcript_id "anno1.2L+_file_1_file_1_g5347.t1"; gene_id "g_20"; +2L AUGUSTUS CDS 186193 186855 1 + 2 transcript_id "anno1.2L+_file_1_file_1_g5347.t1"; gene_id "g_20"; +2L AUGUSTUS exon 186193 186855 . + . transcript_id "anno1.2L+_file_1_file_1_g5347.t1"; gene_id "g_20"; +2L AUGUSTUS intron 186856 186909 1 + . transcript_id "anno1.2L+_file_1_file_1_g5347.t1"; gene_id "g_20"; +2L AUGUSTUS CDS 186910 187016 1 + 2 transcript_id "anno1.2L+_file_1_file_1_g5347.t1"; gene_id "g_20"; +2L AUGUSTUS exon 186910 187016 . + . transcript_id "anno1.2L+_file_1_file_1_g5347.t1"; gene_id "g_20"; +2L AUGUSTUS intron 187017 187481 1 + . transcript_id "anno1.2L+_file_1_file_1_g5347.t1"; gene_id "g_20"; +2L AUGUSTUS CDS 187482 199575 0.92 + 0 transcript_id "anno1.2L+_file_1_file_1_g5347.t1"; gene_id "g_20"; +2L AUGUSTUS exon 187482 199575 . + . transcript_id "anno1.2L+_file_1_file_1_g5347.t1"; gene_id "g_20"; +2L AUGUSTUS intron 199576 199636 1 + . transcript_id "anno1.2L+_file_1_file_1_g5347.t1"; gene_id "g_20"; +2L AUGUSTUS CDS 199637 199743 1 + 2 transcript_id "anno1.2L+_file_1_file_1_g5347.t1"; gene_id "g_20"; +2L AUGUSTUS exon 199637 199743 . + . transcript_id "anno1.2L+_file_1_file_1_g5347.t1"; gene_id "g_20"; +2L AUGUSTUS intron 199744 199902 1 + . transcript_id "anno1.2L+_file_1_file_1_g5347.t1"; gene_id "g_20"; +2L AUGUSTUS CDS 199903 199983 1 + 0 transcript_id "anno1.2L+_file_1_file_1_g5347.t1"; gene_id "g_20"; +2L AUGUSTUS exon 199903 199983 . + . transcript_id "anno1.2L+_file_1_file_1_g5347.t1"; gene_id "g_20"; +2L AUGUSTUS intron 199984 200119 1 + . transcript_id "anno1.2L+_file_1_file_1_g5347.t1"; gene_id "g_20"; +2L AUGUSTUS CDS 200120 200315 1 + 0 transcript_id "anno1.2L+_file_1_file_1_g5347.t1"; gene_id "g_20"; +2L AUGUSTUS exon 200120 200315 . + . transcript_id "anno1.2L+_file_1_file_1_g5347.t1"; gene_id "g_20"; +2L AUGUSTUS intron 200316 200375 1 + . transcript_id "anno1.2L+_file_1_file_1_g5347.t1"; gene_id "g_20"; +2L AUGUSTUS CDS 200376 200675 1 + 2 transcript_id "anno1.2L+_file_1_file_1_g5347.t1"; gene_id "g_20"; +2L AUGUSTUS exon 200376 200675 . + . transcript_id "anno1.2L+_file_1_file_1_g5347.t1"; gene_id "g_20"; +2L AUGUSTUS intron 200676 200741 1 + . transcript_id "anno1.2L+_file_1_file_1_g5347.t1"; gene_id "g_20"; +2L AUGUSTUS CDS 200742 201061 0.98 + 2 transcript_id "anno1.2L+_file_1_file_1_g5347.t1"; gene_id "g_20"; +2L AUGUSTUS exon 200742 201061 . + . transcript_id "anno1.2L+_file_1_file_1_g5347.t1"; gene_id "g_20"; +2L AUGUSTUS intron 201062 201126 1 + . transcript_id "anno1.2L+_file_1_file_1_g5347.t1"; gene_id "g_20"; +2L AUGUSTUS CDS 201127 201414 1 + 0 transcript_id "anno1.2L+_file_1_file_1_g5347.t1"; gene_id "g_20"; +2L AUGUSTUS exon 201127 201414 . + . transcript_id "anno1.2L+_file_1_file_1_g5347.t1"; gene_id "g_20"; +2L AUGUSTUS stop_codon 201412 201414 . + 0 transcript_id "anno1.2L+_file_1_file_1_g5347.t1"; gene_id "g_20"; +2L AUGUSTUS transcript 183412 201414 . + . anno1.2L+_file_1_file_1_g5347.t2 +2L AUGUSTUS start_codon 183412 183414 . + 0 transcript_id "anno1.2L+_file_1_file_1_g5347.t2"; gene_id "g_20"; +2L AUGUSTUS CDS 183412 183419 1 + 0 transcript_id "anno1.2L+_file_1_file_1_g5347.t2"; gene_id "g_20"; +2L AUGUSTUS exon 183412 183419 . + . transcript_id "anno1.2L+_file_1_file_1_g5347.t2"; gene_id "g_20"; +2L AUGUSTUS intron 183420 183760 1 + . transcript_id "anno1.2L+_file_1_file_1_g5347.t2"; gene_id "g_20"; +2L AUGUSTUS CDS 183761 185082 0.78 + 1 transcript_id "anno1.2L+_file_1_file_1_g5347.t2"; gene_id "g_20"; +2L AUGUSTUS exon 183761 185082 . + . transcript_id "anno1.2L+_file_1_file_1_g5347.t2"; gene_id "g_20"; +2L AUGUSTUS intron 185083 185151 1 + . transcript_id "anno1.2L+_file_1_file_1_g5347.t2"; gene_id "g_20"; +2L AUGUSTUS CDS 185152 186123 0.83 + 2 transcript_id "anno1.2L+_file_1_file_1_g5347.t2"; gene_id "g_20"; +2L AUGUSTUS exon 185152 186123 . + . transcript_id "anno1.2L+_file_1_file_1_g5347.t2"; gene_id "g_20"; +2L AUGUSTUS intron 186124 186192 1 + . transcript_id "anno1.2L+_file_1_file_1_g5347.t2"; gene_id "g_20"; +2L AUGUSTUS CDS 186193 186855 1 + 2 transcript_id "anno1.2L+_file_1_file_1_g5347.t2"; gene_id "g_20"; +2L AUGUSTUS exon 186193 186855 . + . transcript_id "anno1.2L+_file_1_file_1_g5347.t2"; gene_id "g_20"; +2L AUGUSTUS intron 186856 186909 1 + . transcript_id "anno1.2L+_file_1_file_1_g5347.t2"; gene_id "g_20"; +2L AUGUSTUS CDS 186910 187016 1 + 2 transcript_id "anno1.2L+_file_1_file_1_g5347.t2"; gene_id "g_20"; +2L AUGUSTUS exon 186910 187016 . + . transcript_id "anno1.2L+_file_1_file_1_g5347.t2"; gene_id "g_20"; +2L AUGUSTUS intron 187017 187481 1 + . transcript_id "anno1.2L+_file_1_file_1_g5347.t2"; gene_id "g_20"; +2L AUGUSTUS CDS 187482 199575 0.93 + 0 transcript_id "anno1.2L+_file_1_file_1_g5347.t2"; gene_id "g_20"; +2L AUGUSTUS exon 187482 199575 . + . transcript_id "anno1.2L+_file_1_file_1_g5347.t2"; gene_id "g_20"; +2L AUGUSTUS intron 199576 199636 1 + . transcript_id "anno1.2L+_file_1_file_1_g5347.t2"; gene_id "g_20"; +2L AUGUSTUS CDS 199637 199743 1 + 2 transcript_id "anno1.2L+_file_1_file_1_g5347.t2"; gene_id "g_20"; +2L AUGUSTUS exon 199637 199743 . + . transcript_id "anno1.2L+_file_1_file_1_g5347.t2"; gene_id "g_20"; +2L AUGUSTUS intron 199744 199902 1 + . transcript_id "anno1.2L+_file_1_file_1_g5347.t2"; gene_id "g_20"; +2L AUGUSTUS CDS 199903 199983 1 + 0 transcript_id "anno1.2L+_file_1_file_1_g5347.t2"; gene_id "g_20"; +2L AUGUSTUS exon 199903 199983 . + . transcript_id "anno1.2L+_file_1_file_1_g5347.t2"; gene_id "g_20"; +2L AUGUSTUS intron 199984 200119 1 + . transcript_id "anno1.2L+_file_1_file_1_g5347.t2"; gene_id "g_20"; +2L AUGUSTUS CDS 200120 200315 1 + 0 transcript_id "anno1.2L+_file_1_file_1_g5347.t2"; gene_id "g_20"; +2L AUGUSTUS exon 200120 200315 . + . transcript_id "anno1.2L+_file_1_file_1_g5347.t2"; gene_id "g_20"; +2L AUGUSTUS intron 200316 200375 1 + . transcript_id "anno1.2L+_file_1_file_1_g5347.t2"; gene_id "g_20"; +2L AUGUSTUS CDS 200376 200675 1 + 2 transcript_id "anno1.2L+_file_1_file_1_g5347.t2"; gene_id "g_20"; +2L AUGUSTUS exon 200376 200675 . + . transcript_id "anno1.2L+_file_1_file_1_g5347.t2"; gene_id "g_20"; +2L AUGUSTUS intron 200676 200741 1 + . transcript_id "anno1.2L+_file_1_file_1_g5347.t2"; gene_id "g_20"; +2L AUGUSTUS CDS 200742 201061 1 + 2 transcript_id "anno1.2L+_file_1_file_1_g5347.t2"; gene_id "g_20"; +2L AUGUSTUS exon 200742 201061 . + . transcript_id "anno1.2L+_file_1_file_1_g5347.t2"; gene_id "g_20"; +2L AUGUSTUS intron 201062 201126 1 + . transcript_id "anno1.2L+_file_1_file_1_g5347.t2"; gene_id "g_20"; +2L AUGUSTUS CDS 201127 201414 1 + 0 transcript_id "anno1.2L+_file_1_file_1_g5347.t2"; gene_id "g_20"; +2L AUGUSTUS exon 201127 201414 . + . transcript_id "anno1.2L+_file_1_file_1_g5347.t2"; gene_id "g_20"; +2L AUGUSTUS stop_codon 201412 201414 . + 0 transcript_id "anno1.2L+_file_1_file_1_g5347.t2"; gene_id "g_20"; +2L AUGUSTUS transcript 183412 201414 . + . anno1.2L+_file_1_file_1_g5347.t3 +2L AUGUSTUS start_codon 183412 183414 . + 0 transcript_id "anno1.2L+_file_1_file_1_g5347.t3"; gene_id "g_20"; +2L AUGUSTUS CDS 183412 183419 1 + 0 transcript_id "anno1.2L+_file_1_file_1_g5347.t3"; gene_id "g_20"; +2L AUGUSTUS exon 183412 183419 . + . transcript_id "anno1.2L+_file_1_file_1_g5347.t3"; gene_id "g_20"; +2L AUGUSTUS intron 183420 183760 1 + . transcript_id "anno1.2L+_file_1_file_1_g5347.t3"; gene_id "g_20"; +2L AUGUSTUS CDS 183761 185082 0.76 + 1 transcript_id "anno1.2L+_file_1_file_1_g5347.t3"; gene_id "g_20"; +2L AUGUSTUS exon 183761 185082 . + . transcript_id "anno1.2L+_file_1_file_1_g5347.t3"; gene_id "g_20"; +2L AUGUSTUS intron 185083 185151 1 + . transcript_id "anno1.2L+_file_1_file_1_g5347.t3"; gene_id "g_20"; +2L AUGUSTUS CDS 185152 186123 0.89 + 2 transcript_id "anno1.2L+_file_1_file_1_g5347.t3"; gene_id "g_20"; +2L AUGUSTUS exon 185152 186123 . + . transcript_id "anno1.2L+_file_1_file_1_g5347.t3"; gene_id "g_20"; +2L AUGUSTUS intron 186124 186192 1 + . transcript_id "anno1.2L+_file_1_file_1_g5347.t3"; gene_id "g_20"; +2L AUGUSTUS CDS 186193 186855 1 + 2 transcript_id "anno1.2L+_file_1_file_1_g5347.t3"; gene_id "g_20"; +2L AUGUSTUS exon 186193 186855 . + . transcript_id "anno1.2L+_file_1_file_1_g5347.t3"; gene_id "g_20"; +2L AUGUSTUS intron 186856 186909 1 + . transcript_id "anno1.2L+_file_1_file_1_g5347.t3"; gene_id "g_20"; +2L AUGUSTUS CDS 186910 187016 1 + 2 transcript_id "anno1.2L+_file_1_file_1_g5347.t3"; gene_id "g_20"; +2L AUGUSTUS exon 186910 187016 . + . transcript_id "anno1.2L+_file_1_file_1_g5347.t3"; gene_id "g_20"; +2L AUGUSTUS intron 187017 187481 1 + . transcript_id "anno1.2L+_file_1_file_1_g5347.t3"; gene_id "g_20"; +2L AUGUSTUS CDS 187482 199575 0.92 + 0 transcript_id "anno1.2L+_file_1_file_1_g5347.t3"; gene_id "g_20"; +2L AUGUSTUS exon 187482 199575 . + . transcript_id "anno1.2L+_file_1_file_1_g5347.t3"; gene_id "g_20"; +2L AUGUSTUS intron 199576 199636 1 + . transcript_id "anno1.2L+_file_1_file_1_g5347.t3"; gene_id "g_20"; +2L AUGUSTUS CDS 199637 199743 1 + 2 transcript_id "anno1.2L+_file_1_file_1_g5347.t3"; gene_id "g_20"; +2L AUGUSTUS exon 199637 199743 . + . transcript_id "anno1.2L+_file_1_file_1_g5347.t3"; gene_id "g_20"; +2L AUGUSTUS intron 199744 200119 1 + . transcript_id "anno1.2L+_file_1_file_1_g5347.t3"; gene_id "g_20"; +2L AUGUSTUS CDS 200120 200315 1 + 0 transcript_id "anno1.2L+_file_1_file_1_g5347.t3"; gene_id "g_20"; +2L AUGUSTUS exon 200120 200315 . + . transcript_id "anno1.2L+_file_1_file_1_g5347.t3"; gene_id "g_20"; +2L AUGUSTUS intron 200316 200375 1 + . transcript_id "anno1.2L+_file_1_file_1_g5347.t3"; gene_id "g_20"; +2L AUGUSTUS CDS 200376 200675 1 + 2 transcript_id "anno1.2L+_file_1_file_1_g5347.t3"; gene_id "g_20"; +2L AUGUSTUS exon 200376 200675 . + . transcript_id "anno1.2L+_file_1_file_1_g5347.t3"; gene_id "g_20"; +2L AUGUSTUS intron 200676 200741 1 + . transcript_id "anno1.2L+_file_1_file_1_g5347.t3"; gene_id "g_20"; +2L AUGUSTUS CDS 200742 201061 1 + 2 transcript_id "anno1.2L+_file_1_file_1_g5347.t3"; gene_id "g_20"; +2L AUGUSTUS exon 200742 201061 . + . transcript_id "anno1.2L+_file_1_file_1_g5347.t3"; gene_id "g_20"; +2L AUGUSTUS intron 201062 201126 1 + . transcript_id "anno1.2L+_file_1_file_1_g5347.t3"; gene_id "g_20"; +2L AUGUSTUS CDS 201127 201414 1 + 0 transcript_id "anno1.2L+_file_1_file_1_g5347.t3"; gene_id "g_20"; +2L AUGUSTUS exon 201127 201414 . + . transcript_id "anno1.2L+_file_1_file_1_g5347.t3"; gene_id "g_20"; +2L AUGUSTUS stop_codon 201412 201414 . + 0 transcript_id "anno1.2L+_file_1_file_1_g5347.t3"; gene_id "g_20"; +2L AUGUSTUS gene 203870 204717 . + . g_21 +2L AUGUSTUS transcript 203870 204717 . + . anno1.2L+_file_1_file_1_g5348.t1 +2L AUGUSTUS start_codon 203870 203872 . + 0 transcript_id "anno1.2L+_file_1_file_1_g5348.t1"; gene_id "g_21"; +2L AUGUSTUS CDS 203870 203891 1 + 0 transcript_id "anno1.2L+_file_1_file_1_g5348.t1"; gene_id "g_21"; +2L AUGUSTUS exon 203870 203891 . + . transcript_id "anno1.2L+_file_1_file_1_g5348.t1"; gene_id "g_21"; +2L AUGUSTUS intron 203892 203992 1 + . transcript_id "anno1.2L+_file_1_file_1_g5348.t1"; gene_id "g_21"; +2L AUGUSTUS CDS 203993 204717 1 + 2 transcript_id "anno1.2L+_file_1_file_1_g5348.t1"; gene_id "g_21"; +2L AUGUSTUS exon 203993 204717 . + . transcript_id "anno1.2L+_file_1_file_1_g5348.t1"; gene_id "g_21"; +2L AUGUSTUS stop_codon 204715 204717 . + 0 transcript_id "anno1.2L+_file_1_file_1_g5348.t1"; gene_id "g_21"; +2L AUGUSTUS gene 205044 206044 . - . g_22 +2L AUGUSTUS transcript 205044 206044 . - . anno1.2L-_file_1_file_1_g5349.t1 +2L AUGUSTUS stop_codon 205044 205046 . - 0 transcript_id "anno1.2L-_file_1_file_1_g5349.t1"; gene_id "g_22"; +2L AUGUSTUS CDS 205044 205212 1 - 1 transcript_id "anno1.2L-_file_1_file_1_g5349.t1"; gene_id "g_22"; +2L AUGUSTUS exon 205044 205212 . - . transcript_id "anno1.2L-_file_1_file_1_g5349.t1"; gene_id "g_22"; +2L AUGUSTUS intron 205213 205271 1 - . transcript_id "anno1.2L-_file_1_file_1_g5349.t1"; gene_id "g_22"; +2L AUGUSTUS CDS 205272 205476 1 - 2 transcript_id "anno1.2L-_file_1_file_1_g5349.t1"; gene_id "g_22"; +2L AUGUSTUS exon 205272 205476 . - . transcript_id "anno1.2L-_file_1_file_1_g5349.t1"; gene_id "g_22"; +2L AUGUSTUS intron 205477 205536 1 - . transcript_id "anno1.2L-_file_1_file_1_g5349.t1"; gene_id "g_22"; +2L AUGUSTUS CDS 205537 205943 1 - 1 transcript_id "anno1.2L-_file_1_file_1_g5349.t1"; gene_id "g_22"; +2L AUGUSTUS exon 205537 205943 . - . transcript_id "anno1.2L-_file_1_file_1_g5349.t1"; gene_id "g_22"; +2L AUGUSTUS intron 205944 206000 1 - . transcript_id "anno1.2L-_file_1_file_1_g5349.t1"; gene_id "g_22"; +2L AUGUSTUS CDS 206001 206044 0.99 - 0 transcript_id "anno1.2L-_file_1_file_1_g5349.t1"; gene_id "g_22"; +2L AUGUSTUS exon 206001 206044 . - . transcript_id "anno1.2L-_file_1_file_1_g5349.t1"; gene_id "g_22"; +2L AUGUSTUS start_codon 206042 206044 . - 0 transcript_id "anno1.2L-_file_1_file_1_g5349.t1"; gene_id "g_22"; +2L AUGUSTUS gene 207512 209858 . + . g_23 +2L AUGUSTUS transcript 207512 209858 . + . anno1.2L+_file_1_file_1_g5350.t1 +2L AUGUSTUS start_codon 207512 207514 . + 0 transcript_id "anno1.2L+_file_1_file_1_g5350.t1"; gene_id "g_23"; +2L AUGUSTUS CDS 207512 207631 1 + 0 transcript_id "anno1.2L+_file_1_file_1_g5350.t1"; gene_id "g_23"; +2L AUGUSTUS exon 207512 207631 . + . transcript_id "anno1.2L+_file_1_file_1_g5350.t1"; gene_id "g_23"; +2L AUGUSTUS intron 207632 207710 1 + . transcript_id "anno1.2L+_file_1_file_1_g5350.t1"; gene_id "g_23"; +2L AUGUSTUS CDS 207711 208608 1 + 0 transcript_id "anno1.2L+_file_1_file_1_g5350.t1"; gene_id "g_23"; +2L AUGUSTUS exon 207711 208608 . + . transcript_id "anno1.2L+_file_1_file_1_g5350.t1"; gene_id "g_23"; +2L AUGUSTUS intron 208609 208728 1 + . transcript_id "anno1.2L+_file_1_file_1_g5350.t1"; gene_id "g_23"; +2L AUGUSTUS CDS 208729 209858 1 + 2 transcript_id "anno1.2L+_file_1_file_1_g5350.t1"; gene_id "g_23"; +2L AUGUSTUS exon 208729 209858 . + . transcript_id "anno1.2L+_file_1_file_1_g5350.t1"; gene_id "g_23"; +2L AUGUSTUS stop_codon 209856 209858 . + 0 transcript_id "anno1.2L+_file_1_file_1_g5350.t1"; gene_id "g_23"; +2L AUGUSTUS gene 212185 221643 . - . g_24 +2L AUGUSTUS transcript 212185 221643 . - . anno1.2L-_file_1_file_1_g5351.t1 +2L AUGUSTUS stop_codon 212185 212187 . - 0 transcript_id "anno1.2L-_file_1_file_1_g5351.t1"; gene_id "g_24"; +2L AUGUSTUS CDS 212185 214942 1 - 1 transcript_id "anno1.2L-_file_1_file_1_g5351.t1"; gene_id "g_24"; +2L AUGUSTUS exon 212185 214942 . - . transcript_id "anno1.2L-_file_1_file_1_g5351.t1"; gene_id "g_24"; +2L AUGUSTUS intron 214943 215033 1 - . transcript_id "anno1.2L-_file_1_file_1_g5351.t1"; gene_id "g_24"; +2L AUGUSTUS CDS 215034 215676 1 - 2 transcript_id "anno1.2L-_file_1_file_1_g5351.t1"; gene_id "g_24"; +2L AUGUSTUS exon 215034 215676 . - . transcript_id "anno1.2L-_file_1_file_1_g5351.t1"; gene_id "g_24"; +2L AUGUSTUS intron 215677 215772 1 - . transcript_id "anno1.2L-_file_1_file_1_g5351.t1"; gene_id "g_24"; +2L AUGUSTUS CDS 215773 216007 1 - 0 transcript_id "anno1.2L-_file_1_file_1_g5351.t1"; gene_id "g_24"; +2L AUGUSTUS exon 215773 216007 . - . transcript_id "anno1.2L-_file_1_file_1_g5351.t1"; gene_id "g_24"; +2L AUGUSTUS intron 216008 216076 1 - . transcript_id "anno1.2L-_file_1_file_1_g5351.t1"; gene_id "g_24"; +2L AUGUSTUS CDS 216077 216275 1 - 1 transcript_id "anno1.2L-_file_1_file_1_g5351.t1"; gene_id "g_24"; +2L AUGUSTUS exon 216077 216275 . - . transcript_id "anno1.2L-_file_1_file_1_g5351.t1"; gene_id "g_24"; +2L AUGUSTUS intron 216276 216344 1 - . transcript_id "anno1.2L-_file_1_file_1_g5351.t1"; gene_id "g_24"; +2L AUGUSTUS CDS 216345 216573 1 - 2 transcript_id "anno1.2L-_file_1_file_1_g5351.t1"; gene_id "g_24"; +2L AUGUSTUS exon 216345 216573 . - . transcript_id "anno1.2L-_file_1_file_1_g5351.t1"; gene_id "g_24"; +2L AUGUSTUS intron 216574 216631 1 - . transcript_id "anno1.2L-_file_1_file_1_g5351.t1"; gene_id "g_24"; +2L AUGUSTUS CDS 216632 218885 0.99 - 0 transcript_id "anno1.2L-_file_1_file_1_g5351.t1"; gene_id "g_24"; +2L AUGUSTUS exon 216632 218885 . - . transcript_id "anno1.2L-_file_1_file_1_g5351.t1"; gene_id "g_24"; +2L AUGUSTUS intron 218886 221505 0.99 - . transcript_id "anno1.2L-_file_1_file_1_g5351.t1"; gene_id "g_24"; +2L AUGUSTUS CDS 221506 221643 0.95 - 0 transcript_id "anno1.2L-_file_1_file_1_g5351.t1"; gene_id "g_24"; +2L AUGUSTUS exon 221506 221643 . - . transcript_id "anno1.2L-_file_1_file_1_g5351.t1"; gene_id "g_24"; +2L AUGUSTUS start_codon 221641 221643 . - 0 transcript_id "anno1.2L-_file_1_file_1_g5351.t1"; gene_id "g_24"; +2L AUGUSTUS gene 232575 233965 . + . g_25 +2L AUGUSTUS transcript 232575 233965 . + . anno1.2L+_file_1_file_1_g5352.t1 +2L AUGUSTUS start_codon 232575 232577 . + 0 transcript_id "anno1.2L+_file_1_file_1_g5352.t1"; gene_id "g_25"; +2L AUGUSTUS CDS 232575 233154 0.91 + 0 transcript_id "anno1.2L+_file_1_file_1_g5352.t1"; gene_id "g_25"; +2L AUGUSTUS exon 232575 233154 . + . transcript_id "anno1.2L+_file_1_file_1_g5352.t1"; gene_id "g_25"; +2L AUGUSTUS intron 233155 233216 1 + . transcript_id "anno1.2L+_file_1_file_1_g5352.t1"; gene_id "g_25"; +2L AUGUSTUS CDS 233217 233965 1 + 2 transcript_id "anno1.2L+_file_1_file_1_g5352.t1"; gene_id "g_25"; +2L AUGUSTUS exon 233217 233965 . + . transcript_id "anno1.2L+_file_1_file_1_g5352.t1"; gene_id "g_25"; +2L AUGUSTUS stop_codon 233963 233965 . + 0 transcript_id "anno1.2L+_file_1_file_1_g5352.t1"; gene_id "g_25"; +2L AUGUSTUS gene 233993 242287 . - . g_26 +2L AUGUSTUS transcript 233993 242266 . - . anno1.2L-_file_1_file_1_g5353.t1 +2L AUGUSTUS stop_codon 233993 233995 . - 0 transcript_id "anno1.2L-_file_1_file_1_g5353.t1"; gene_id "g_26"; +2L AUGUSTUS CDS 233993 234174 1 - 2 transcript_id "anno1.2L-_file_1_file_1_g5353.t1"; gene_id "g_26"; +2L AUGUSTUS exon 233993 234174 . - . transcript_id "anno1.2L-_file_1_file_1_g5353.t1"; gene_id "g_26"; +2L AUGUSTUS intron 234175 234236 1 - . transcript_id "anno1.2L-_file_1_file_1_g5353.t1"; gene_id "g_26"; +2L AUGUSTUS CDS 234237 242143 0.92 - 1 transcript_id "anno1.2L-_file_1_file_1_g5353.t1"; gene_id "g_26"; +2L AUGUSTUS exon 234237 242143 . - . transcript_id "anno1.2L-_file_1_file_1_g5353.t1"; gene_id "g_26"; +2L AUGUSTUS intron 242144 242243 1 - . transcript_id "anno1.2L-_file_1_file_1_g5353.t1"; gene_id "g_26"; +2L AUGUSTUS CDS 242244 242266 0.95 - 0 transcript_id "anno1.2L-_file_1_file_1_g5353.t1"; gene_id "g_26"; +2L AUGUSTUS exon 242244 242266 . - . transcript_id "anno1.2L-_file_1_file_1_g5353.t1"; gene_id "g_26"; +2L AUGUSTUS start_codon 242264 242266 . - 0 transcript_id "anno1.2L-_file_1_file_1_g5353.t1"; gene_id "g_26"; +2L AUGUSTUS transcript 233993 242287 . - . anno2.2L-_file_1_file_1_g28.t1 +2L AUGUSTUS stop_codon 233993 233995 . - 0 transcript_id "anno2.2L-_file_1_file_1_g28.t1"; gene_id "g_26"; +2L AUGUSTUS CDS 233993 234174 1 - 2 transcript_id "anno2.2L-_file_1_file_1_g28.t1"; gene_id "g_26"; +2L AUGUSTUS exon 233993 234174 . - . transcript_id "anno2.2L-_file_1_file_1_g28.t1"; gene_id "g_26"; +2L AUGUSTUS intron 234175 234236 1 - . transcript_id "anno2.2L-_file_1_file_1_g28.t1"; gene_id "g_26"; +2L AUGUSTUS CDS 234237 242143 0.74 - 1 transcript_id "anno2.2L-_file_1_file_1_g28.t1"; gene_id "g_26"; +2L AUGUSTUS exon 234237 242143 . - . transcript_id "anno2.2L-_file_1_file_1_g28.t1"; gene_id "g_26"; +2L AUGUSTUS intron 242144 242243 0.5 - . transcript_id "anno2.2L-_file_1_file_1_g28.t1"; gene_id "g_26"; +2L AUGUSTUS CDS 242244 242287 0.35 - 0 transcript_id "anno2.2L-_file_1_file_1_g28.t1"; gene_id "g_26"; +2L AUGUSTUS exon 242244 242287 . - . transcript_id "anno2.2L-_file_1_file_1_g28.t1"; gene_id "g_26"; +2L AUGUSTUS start_codon 242285 242287 . - 0 transcript_id "anno2.2L-_file_1_file_1_g28.t1"; gene_id "g_26"; +2L AUGUSTUS gene 251194 252317 . - . g_27 +2L AUGUSTUS transcript 251194 252317 . - . anno1.2L-_file_1_file_1_g5354.t1 +2L AUGUSTUS stop_codon 251194 251196 . - 0 transcript_id "anno1.2L-_file_1_file_1_g5354.t1"; gene_id "g_27"; +2L AUGUSTUS CDS 251194 251464 1 - 1 transcript_id "anno1.2L-_file_1_file_1_g5354.t1"; gene_id "g_27"; +2L AUGUSTUS exon 251194 251464 . - . transcript_id "anno1.2L-_file_1_file_1_g5354.t1"; gene_id "g_27"; +2L AUGUSTUS intron 251465 251526 1 - . transcript_id "anno1.2L-_file_1_file_1_g5354.t1"; gene_id "g_27"; +2L AUGUSTUS CDS 251527 251801 1 - 0 transcript_id "anno1.2L-_file_1_file_1_g5354.t1"; gene_id "g_27"; +2L AUGUSTUS exon 251527 251801 . - . transcript_id "anno1.2L-_file_1_file_1_g5354.t1"; gene_id "g_27"; +2L AUGUSTUS intron 251802 251855 1 - . transcript_id "anno1.2L-_file_1_file_1_g5354.t1"; gene_id "g_27"; +2L AUGUSTUS CDS 251856 251924 1 - 0 transcript_id "anno1.2L-_file_1_file_1_g5354.t1"; gene_id "g_27"; +2L AUGUSTUS exon 251856 251924 . - . transcript_id "anno1.2L-_file_1_file_1_g5354.t1"; gene_id "g_27"; +2L AUGUSTUS intron 251925 251978 1 - . transcript_id "anno1.2L-_file_1_file_1_g5354.t1"; gene_id "g_27"; +2L AUGUSTUS CDS 251979 252166 1 - 2 transcript_id "anno1.2L-_file_1_file_1_g5354.t1"; gene_id "g_27"; +2L AUGUSTUS exon 251979 252166 . - . transcript_id "anno1.2L-_file_1_file_1_g5354.t1"; gene_id "g_27"; +2L AUGUSTUS intron 252167 252226 1 - . transcript_id "anno1.2L-_file_1_file_1_g5354.t1"; gene_id "g_27"; +2L AUGUSTUS CDS 252227 252317 1 - 0 transcript_id "anno1.2L-_file_1_file_1_g5354.t1"; gene_id "g_27"; +2L AUGUSTUS exon 252227 252317 . - . transcript_id "anno1.2L-_file_1_file_1_g5354.t1"; gene_id "g_27"; +2L AUGUSTUS start_codon 252315 252317 . - 0 transcript_id "anno1.2L-_file_1_file_1_g5354.t1"; gene_id "g_27"; +2L AUGUSTUS gene 252663 254379 . - . g_28 +2L AUGUSTUS transcript 252663 254379 . - . anno1.2L-_file_1_file_1_g5355.t1 +2L AUGUSTUS stop_codon 252663 252665 . - 0 transcript_id "anno1.2L-_file_1_file_1_g5355.t1"; gene_id "g_28"; +2L AUGUSTUS CDS 252663 253145 1 - 0 transcript_id "anno1.2L-_file_1_file_1_g5355.t1"; gene_id "g_28"; +2L AUGUSTUS exon 252663 253145 . - . transcript_id "anno1.2L-_file_1_file_1_g5355.t1"; gene_id "g_28"; +2L AUGUSTUS intron 253146 253219 1 - . transcript_id "anno1.2L-_file_1_file_1_g5355.t1"; gene_id "g_28"; +2L AUGUSTUS CDS 253220 253385 1 - 1 transcript_id "anno1.2L-_file_1_file_1_g5355.t1"; gene_id "g_28"; +2L AUGUSTUS exon 253220 253385 . - . transcript_id "anno1.2L-_file_1_file_1_g5355.t1"; gene_id "g_28"; +2L AUGUSTUS intron 253386 253445 1 - . transcript_id "anno1.2L-_file_1_file_1_g5355.t1"; gene_id "g_28"; +2L AUGUSTUS CDS 253446 253890 1 - 2 transcript_id "anno1.2L-_file_1_file_1_g5355.t1"; gene_id "g_28"; +2L AUGUSTUS exon 253446 253890 . - . transcript_id "anno1.2L-_file_1_file_1_g5355.t1"; gene_id "g_28"; +2L AUGUSTUS intron 253891 253955 1 - . transcript_id "anno1.2L-_file_1_file_1_g5355.t1"; gene_id "g_28"; +2L AUGUSTUS CDS 253956 254379 0.89 - 0 transcript_id "anno1.2L-_file_1_file_1_g5355.t1"; gene_id "g_28"; +2L AUGUSTUS exon 253956 254379 . - . transcript_id "anno1.2L-_file_1_file_1_g5355.t1"; gene_id "g_28"; +2L AUGUSTUS start_codon 254377 254379 . - 0 transcript_id "anno1.2L-_file_1_file_1_g5355.t1"; gene_id "g_28"; +2L AUGUSTUS gene 263782 266688 . - . g_29 +2L AUGUSTUS transcript 263782 266688 . - . anno1.2L-_file_1_file_1_g5356.t1 +2L AUGUSTUS stop_codon 263782 263784 . - 0 transcript_id "anno1.2L-_file_1_file_1_g5356.t1"; gene_id "g_29"; +2L AUGUSTUS CDS 263782 266688 1 - 0 transcript_id "anno1.2L-_file_1_file_1_g5356.t1"; gene_id "g_29"; +2L AUGUSTUS exon 263782 266688 . - . transcript_id "anno1.2L-_file_1_file_1_g5356.t1"; gene_id "g_29"; +2L AUGUSTUS start_codon 266686 266688 . - 0 transcript_id "anno1.2L-_file_1_file_1_g5356.t1"; gene_id "g_29"; +2L AUGUSTUS gene 269192 271314 . + . g_30 +2L AUGUSTUS transcript 269192 271314 . + . anno1.2L+_file_1_file_1_g5357.t1 +2L AUGUSTUS start_codon 269192 269194 . + 0 transcript_id "anno1.2L+_file_1_file_1_g5357.t1"; gene_id "g_30"; +2L AUGUSTUS CDS 269192 269389 0.99 + 0 transcript_id "anno1.2L+_file_1_file_1_g5357.t1"; gene_id "g_30"; +2L AUGUSTUS exon 269192 269389 . + . transcript_id "anno1.2L+_file_1_file_1_g5357.t1"; gene_id "g_30"; +2L AUGUSTUS intron 269390 269457 1 + . transcript_id "anno1.2L+_file_1_file_1_g5357.t1"; gene_id "g_30"; +2L AUGUSTUS CDS 269458 270606 1 + 0 transcript_id "anno1.2L+_file_1_file_1_g5357.t1"; gene_id "g_30"; +2L AUGUSTUS exon 269458 270606 . + . transcript_id "anno1.2L+_file_1_file_1_g5357.t1"; gene_id "g_30"; +2L AUGUSTUS intron 270607 270660 1 + . transcript_id "anno1.2L+_file_1_file_1_g5357.t1"; gene_id "g_30"; +2L AUGUSTUS CDS 270661 271314 1 + 0 transcript_id "anno1.2L+_file_1_file_1_g5357.t1"; gene_id "g_30"; +2L AUGUSTUS exon 270661 271314 . + . transcript_id "anno1.2L+_file_1_file_1_g5357.t1"; gene_id "g_30"; +2L AUGUSTUS stop_codon 271312 271314 . + 0 transcript_id "anno1.2L+_file_1_file_1_g5357.t1"; gene_id "g_30"; +2L AUGUSTUS gene 271967 273634 . - . g_31 +2L AUGUSTUS transcript 271967 273634 . - . anno1.2L-_file_1_file_1_g5358.t1 +2L AUGUSTUS stop_codon 271967 271969 . - 0 transcript_id "anno1.2L-_file_1_file_1_g5358.t1"; gene_id "g_31"; +2L AUGUSTUS CDS 271967 272506 0.75 - 0 transcript_id "anno1.2L-_file_1_file_1_g5358.t1"; gene_id "g_31"; +2L AUGUSTUS exon 271967 272506 . - . transcript_id "anno1.2L-_file_1_file_1_g5358.t1"; gene_id "g_31"; +2L AUGUSTUS intron 272507 272554 1 - . transcript_id "anno1.2L-_file_1_file_1_g5358.t1"; gene_id "g_31"; +2L AUGUSTUS CDS 272555 273634 1 - 0 transcript_id "anno1.2L-_file_1_file_1_g5358.t1"; gene_id "g_31"; +2L AUGUSTUS exon 272555 273634 . - . transcript_id "anno1.2L-_file_1_file_1_g5358.t1"; gene_id "g_31"; +2L AUGUSTUS start_codon 273632 273634 . - 0 transcript_id "anno1.2L-_file_1_file_1_g5358.t1"; gene_id "g_31"; +2L AUGUSTUS gene 273986 274651 . + . g_32 +2L AUGUSTUS transcript 273986 274651 . + . anno1.2L+_file_1_file_1_g5359.t1 +2L AUGUSTUS start_codon 273986 273988 . + 0 transcript_id "anno1.2L+_file_1_file_1_g5359.t1"; gene_id "g_32"; +2L AUGUSTUS CDS 273986 274651 1 + 0 transcript_id "anno1.2L+_file_1_file_1_g5359.t1"; gene_id "g_32"; +2L AUGUSTUS exon 273986 274651 . + . transcript_id "anno1.2L+_file_1_file_1_g5359.t1"; gene_id "g_32"; +2L AUGUSTUS stop_codon 274649 274651 . + 0 transcript_id "anno1.2L+_file_1_file_1_g5359.t1"; gene_id "g_32"; +2L AUGUSTUS gene 274947 277142 . - . g_33 +2L AUGUSTUS transcript 274947 277142 . - . anno1.2L-_file_1_file_1_g5360.t1 +2L AUGUSTUS stop_codon 274947 274949 . - 0 transcript_id "anno1.2L-_file_1_file_1_g5360.t1"; gene_id "g_33"; +2L AUGUSTUS CDS 274947 275251 1 - 2 transcript_id "anno1.2L-_file_1_file_1_g5360.t1"; gene_id "g_33"; +2L AUGUSTUS exon 274947 275251 . - . transcript_id "anno1.2L-_file_1_file_1_g5360.t1"; gene_id "g_33"; +2L AUGUSTUS intron 275252 275318 1 - . transcript_id "anno1.2L-_file_1_file_1_g5360.t1"; gene_id "g_33"; +2L AUGUSTUS CDS 275319 276497 1 - 2 transcript_id "anno1.2L-_file_1_file_1_g5360.t1"; gene_id "g_33"; +2L AUGUSTUS exon 275319 276497 . - . transcript_id "anno1.2L-_file_1_file_1_g5360.t1"; gene_id "g_33"; +2L AUGUSTUS intron 276498 276738 1 - . transcript_id "anno1.2L-_file_1_file_1_g5360.t1"; gene_id "g_33"; +2L AUGUSTUS CDS 276739 276903 1 - 2 transcript_id "anno1.2L-_file_1_file_1_g5360.t1"; gene_id "g_33"; +2L AUGUSTUS exon 276739 276903 . - . transcript_id "anno1.2L-_file_1_file_1_g5360.t1"; gene_id "g_33"; +2L AUGUSTUS intron 276904 276958 1 - . transcript_id "anno1.2L-_file_1_file_1_g5360.t1"; gene_id "g_33"; +2L AUGUSTUS CDS 276959 277142 1 - 0 transcript_id "anno1.2L-_file_1_file_1_g5360.t1"; gene_id "g_33"; +2L AUGUSTUS exon 276959 277142 . - . transcript_id "anno1.2L-_file_1_file_1_g5360.t1"; gene_id "g_33"; +2L AUGUSTUS start_codon 277140 277142 . - 0 transcript_id "anno1.2L-_file_1_file_1_g5360.t1"; gene_id "g_33"; +2L AUGUSTUS gene 277826 281514 . + . g_34 +2L AUGUSTUS transcript 277826 281514 . + . anno1.2L+_file_1_file_1_g5361.t1 +2L AUGUSTUS start_codon 277826 277828 . + 0 transcript_id "anno1.2L+_file_1_file_1_g5361.t1"; gene_id "g_34"; +2L AUGUSTUS CDS 277826 277863 0.79 + 0 transcript_id "anno1.2L+_file_1_file_1_g5361.t1"; gene_id "g_34"; +2L AUGUSTUS exon 277826 277863 . + . transcript_id "anno1.2L+_file_1_file_1_g5361.t1"; gene_id "g_34"; +2L AUGUSTUS intron 277864 277929 1 + . transcript_id "anno1.2L+_file_1_file_1_g5361.t1"; gene_id "g_34"; +2L AUGUSTUS CDS 277930 278323 1 + 1 transcript_id "anno1.2L+_file_1_file_1_g5361.t1"; gene_id "g_34"; +2L AUGUSTUS exon 277930 278323 . + . transcript_id "anno1.2L+_file_1_file_1_g5361.t1"; gene_id "g_34"; +2L AUGUSTUS intron 278324 278642 1 + . transcript_id "anno1.2L+_file_1_file_1_g5361.t1"; gene_id "g_34"; +2L AUGUSTUS CDS 278643 279124 1 + 0 transcript_id "anno1.2L+_file_1_file_1_g5361.t1"; gene_id "g_34"; +2L AUGUSTUS exon 278643 279124 . + . transcript_id "anno1.2L+_file_1_file_1_g5361.t1"; gene_id "g_34"; +2L AUGUSTUS intron 279125 279184 1 + . transcript_id "anno1.2L+_file_1_file_1_g5361.t1"; gene_id "g_34"; +2L AUGUSTUS CDS 279185 279805 1 + 1 transcript_id "anno1.2L+_file_1_file_1_g5361.t1"; gene_id "g_34"; +2L AUGUSTUS exon 279185 279805 . + . transcript_id "anno1.2L+_file_1_file_1_g5361.t1"; gene_id "g_34"; +2L AUGUSTUS intron 279806 279869 1 + . transcript_id "anno1.2L+_file_1_file_1_g5361.t1"; gene_id "g_34"; +2L AUGUSTUS CDS 279870 280040 1 + 1 transcript_id "anno1.2L+_file_1_file_1_g5361.t1"; gene_id "g_34"; +2L AUGUSTUS exon 279870 280040 . + . transcript_id "anno1.2L+_file_1_file_1_g5361.t1"; gene_id "g_34"; +2L AUGUSTUS intron 280041 280109 1 + . transcript_id "anno1.2L+_file_1_file_1_g5361.t1"; gene_id "g_34"; +2L AUGUSTUS CDS 280110 280422 1 + 1 transcript_id "anno1.2L+_file_1_file_1_g5361.t1"; gene_id "g_34"; +2L AUGUSTUS exon 280110 280422 . + . transcript_id "anno1.2L+_file_1_file_1_g5361.t1"; gene_id "g_34"; +2L AUGUSTUS intron 280423 280476 1 + . transcript_id "anno1.2L+_file_1_file_1_g5361.t1"; gene_id "g_34"; +2L AUGUSTUS CDS 280477 281514 0.99 + 0 transcript_id "anno1.2L+_file_1_file_1_g5361.t1"; gene_id "g_34"; +2L AUGUSTUS exon 280477 281514 . + . transcript_id "anno1.2L+_file_1_file_1_g5361.t1"; gene_id "g_34"; +2L AUGUSTUS stop_codon 281512 281514 . + 0 transcript_id "anno1.2L+_file_1_file_1_g5361.t1"; gene_id "g_34"; +2L AUGUSTUS transcript 277826 281514 . + . anno2.2L+_file_1_file_1_g36.t1 +2L AUGUSTUS start_codon 277826 277828 . + 0 transcript_id "anno2.2L+_file_1_file_1_g36.t1"; gene_id "g_34"; +2L AUGUSTUS CDS 277826 277863 1 + 0 transcript_id "anno2.2L+_file_1_file_1_g36.t1"; gene_id "g_34"; +2L AUGUSTUS exon 277826 277863 . + . transcript_id "anno2.2L+_file_1_file_1_g36.t1"; gene_id "g_34"; +2L AUGUSTUS intron 277864 277929 1 + . transcript_id "anno2.2L+_file_1_file_1_g36.t1"; gene_id "g_34"; +2L AUGUSTUS CDS 277930 278323 1 + 1 transcript_id "anno2.2L+_file_1_file_1_g36.t1"; gene_id "g_34"; +2L AUGUSTUS exon 277930 278323 . + . transcript_id "anno2.2L+_file_1_file_1_g36.t1"; gene_id "g_34"; +2L AUGUSTUS intron 278324 278642 1 + . transcript_id "anno2.2L+_file_1_file_1_g36.t1"; gene_id "g_34"; +2L AUGUSTUS CDS 278643 279124 1 + 0 transcript_id "anno2.2L+_file_1_file_1_g36.t1"; gene_id "g_34"; +2L AUGUSTUS exon 278643 279124 . + . transcript_id "anno2.2L+_file_1_file_1_g36.t1"; gene_id "g_34"; +2L AUGUSTUS intron 279125 279184 1 + . transcript_id "anno2.2L+_file_1_file_1_g36.t1"; gene_id "g_34"; +2L AUGUSTUS CDS 279185 279805 1 + 1 transcript_id "anno2.2L+_file_1_file_1_g36.t1"; gene_id "g_34"; +2L AUGUSTUS exon 279185 279805 . + . transcript_id "anno2.2L+_file_1_file_1_g36.t1"; gene_id "g_34"; +2L AUGUSTUS intron 279806 279869 1 + . transcript_id "anno2.2L+_file_1_file_1_g36.t1"; gene_id "g_34"; +2L AUGUSTUS CDS 279870 280040 1 + 1 transcript_id "anno2.2L+_file_1_file_1_g36.t1"; gene_id "g_34"; +2L AUGUSTUS exon 279870 280040 . + . transcript_id "anno2.2L+_file_1_file_1_g36.t1"; gene_id "g_34"; +2L AUGUSTUS intron 280041 280109 1 + . transcript_id "anno2.2L+_file_1_file_1_g36.t1"; gene_id "g_34"; +2L AUGUSTUS CDS 280110 281514 1 + 1 transcript_id "anno2.2L+_file_1_file_1_g36.t1"; gene_id "g_34"; +2L AUGUSTUS exon 280110 281514 . + . transcript_id "anno2.2L+_file_1_file_1_g36.t1"; gene_id "g_34"; +2L AUGUSTUS stop_codon 281512 281514 . + 0 transcript_id "anno2.2L+_file_1_file_1_g36.t1"; gene_id "g_34"; +2L AUGUSTUS gene 282172 283147 . - . g_35 +2L AUGUSTUS transcript 282172 283147 . - . anno1.2L-_file_1_file_1_g5362.t1 +2L AUGUSTUS stop_codon 282172 282174 . - 0 transcript_id "anno1.2L-_file_1_file_1_g5362.t1"; gene_id "g_35"; +2L AUGUSTUS CDS 282172 282505 1 - 1 transcript_id "anno1.2L-_file_1_file_1_g5362.t1"; gene_id "g_35"; +2L AUGUSTUS exon 282172 282505 . - . transcript_id "anno1.2L-_file_1_file_1_g5362.t1"; gene_id "g_35"; +2L AUGUSTUS intron 282506 282653 1 - . transcript_id "anno1.2L-_file_1_file_1_g5362.t1"; gene_id "g_35"; +2L AUGUSTUS CDS 282654 283147 0.97 - 0 transcript_id "anno1.2L-_file_1_file_1_g5362.t1"; gene_id "g_35"; +2L AUGUSTUS exon 282654 283147 . - . transcript_id "anno1.2L-_file_1_file_1_g5362.t1"; gene_id "g_35"; +2L AUGUSTUS start_codon 283145 283147 . - 0 transcript_id "anno1.2L-_file_1_file_1_g5362.t1"; gene_id "g_35"; +2L AUGUSTUS gene 283886 285633 . - . g_36 +2L AUGUSTUS transcript 283886 285633 . - . anno1.2L-_file_1_file_1_g5363.t1 +2L AUGUSTUS stop_codon 283886 283888 . - 0 transcript_id "anno1.2L-_file_1_file_1_g5363.t1"; gene_id "g_36"; +2L AUGUSTUS CDS 283886 284210 0.99 - 1 transcript_id "anno1.2L-_file_1_file_1_g5363.t1"; gene_id "g_36"; +2L AUGUSTUS exon 283886 284210 . - . transcript_id "anno1.2L-_file_1_file_1_g5363.t1"; gene_id "g_36"; +2L AUGUSTUS intron 284211 284747 1 - . transcript_id "anno1.2L-_file_1_file_1_g5363.t1"; gene_id "g_36"; +2L AUGUSTUS CDS 284748 284968 1 - 0 transcript_id "anno1.2L-_file_1_file_1_g5363.t1"; gene_id "g_36"; +2L AUGUSTUS exon 284748 284968 . - . transcript_id "anno1.2L-_file_1_file_1_g5363.t1"; gene_id "g_36"; +2L AUGUSTUS intron 284969 285432 1 - . transcript_id "anno1.2L-_file_1_file_1_g5363.t1"; gene_id "g_36"; +2L AUGUSTUS CDS 285433 285633 0.96 - 0 transcript_id "anno1.2L-_file_1_file_1_g5363.t1"; gene_id "g_36"; +2L AUGUSTUS exon 285433 285633 . - . transcript_id "anno1.2L-_file_1_file_1_g5363.t1"; gene_id "g_36"; +2L AUGUSTUS start_codon 285631 285633 . - 0 transcript_id "anno1.2L-_file_1_file_1_g5363.t1"; gene_id "g_36"; +2L AUGUSTUS gene 287402 288919 . - . g_38 +2L AUGUSTUS transcript 287402 288919 . - . anno1.2L-_file_1_file_1_g5365.t1 +2L AUGUSTUS stop_codon 287402 287404 . - 0 transcript_id "anno1.2L-_file_1_file_1_g5365.t1"; gene_id "g_38"; +2L AUGUSTUS CDS 287402 288919 1 - 0 transcript_id "anno1.2L-_file_1_file_1_g5365.t1"; gene_id "g_38"; +2L AUGUSTUS exon 287402 288919 . - . transcript_id "anno1.2L-_file_1_file_1_g5365.t1"; gene_id "g_38"; +2L AUGUSTUS start_codon 288917 288919 . - 0 transcript_id "anno1.2L-_file_1_file_1_g5365.t1"; gene_id "g_38"; +2L AUGUSTUS gene 290804 291010 . - . g_39 +2L AUGUSTUS transcript 290804 291010 . - . anno1.2L-_file_1_file_1_g5366.t1 +2L AUGUSTUS stop_codon 290804 290806 . - 0 transcript_id "anno1.2L-_file_1_file_1_g5366.t1"; gene_id "g_39"; +2L AUGUSTUS CDS 290804 291010 0.96 - 0 transcript_id "anno1.2L-_file_1_file_1_g5366.t1"; gene_id "g_39"; +2L AUGUSTUS exon 290804 291010 . - . transcript_id "anno1.2L-_file_1_file_1_g5366.t1"; gene_id "g_39"; +2L AUGUSTUS start_codon 291008 291010 . - 0 transcript_id "anno1.2L-_file_1_file_1_g5366.t1"; gene_id "g_39"; +2L AUGUSTUS gene 292569 293002 . + . g_40 +2L AUGUSTUS transcript 292569 293002 . + . anno1.2L+_file_1_file_1_g5367.t1 +2L AUGUSTUS start_codon 292569 292571 . + 0 transcript_id "anno1.2L+_file_1_file_1_g5367.t1"; gene_id "g_40"; +2L AUGUSTUS CDS 292569 292660 1 + 0 transcript_id "anno1.2L+_file_1_file_1_g5367.t1"; gene_id "g_40"; +2L AUGUSTUS exon 292569 292660 . + . transcript_id "anno1.2L+_file_1_file_1_g5367.t1"; gene_id "g_40"; +2L AUGUSTUS intron 292661 292716 1 + . transcript_id "anno1.2L+_file_1_file_1_g5367.t1"; gene_id "g_40"; +2L AUGUSTUS CDS 292717 293002 1 + 1 transcript_id "anno1.2L+_file_1_file_1_g5367.t1"; gene_id "g_40"; +2L AUGUSTUS exon 292717 293002 . + . transcript_id "anno1.2L+_file_1_file_1_g5367.t1"; gene_id "g_40"; +2L AUGUSTUS stop_codon 293000 293002 . + 0 transcript_id "anno1.2L+_file_1_file_1_g5367.t1"; gene_id "g_40"; +2L AUGUSTUS gene 293622 294484 . - . g_41 +2L AUGUSTUS transcript 293622 294484 . - . anno1.2L-_file_1_file_1_g5368.t1 +2L AUGUSTUS stop_codon 293622 293624 . - 0 transcript_id "anno1.2L-_file_1_file_1_g5368.t1"; gene_id "g_41"; +2L AUGUSTUS CDS 293622 294372 1 - 1 transcript_id "anno1.2L-_file_1_file_1_g5368.t1"; gene_id "g_41"; +2L AUGUSTUS exon 293622 294372 . - . transcript_id "anno1.2L-_file_1_file_1_g5368.t1"; gene_id "g_41"; +2L AUGUSTUS intron 294373 294440 1 - . transcript_id "anno1.2L-_file_1_file_1_g5368.t1"; gene_id "g_41"; +2L AUGUSTUS CDS 294441 294484 1 - 0 transcript_id "anno1.2L-_file_1_file_1_g5368.t1"; gene_id "g_41"; +2L AUGUSTUS exon 294441 294484 . - . transcript_id "anno1.2L-_file_1_file_1_g5368.t1"; gene_id "g_41"; +2L AUGUSTUS start_codon 294482 294484 . - 0 transcript_id "anno1.2L-_file_1_file_1_g5368.t1"; gene_id "g_41"; diff --git a/example/tsebra_workdir/braker1.gtf b/example/tsebra_workdir/braker1.gtf new file mode 100644 index 0000000..a109b12 --- /dev/null +++ b/example/tsebra_workdir/braker1.gtf @@ -0,0 +1,940 @@ +2L AUGUSTUS CDS 22092 22687 0.36 - 1 transcript_id "2L-_file_1_file_1_g5328.t1"; gene_id "2L-_file_1_file_1_g5328"; +2L AUGUSTUS exon 22092 22687 . - . transcript_id "2L-_file_1_file_1_g5328.t1"; gene_id "2L-_file_1_file_1_g5328"; +2L AUGUSTUS intron 22688 22742 0.42 - . transcript_id "2L-_file_1_file_1_g5328.t1"; gene_id "2L-_file_1_file_1_g5328"; +2L AUGUSTUS CDS 22743 22867 0.71 - 0 transcript_id "2L-_file_1_file_1_g5328.t1"; gene_id "2L-_file_1_file_1_g5328"; +2L AUGUSTUS exon 22743 22867 . - . transcript_id "2L-_file_1_file_1_g5328.t1"; gene_id "2L-_file_1_file_1_g5328"; +2L AUGUSTUS start_codon 22865 22867 . - 0 transcript_id "2L-_file_1_file_1_g5328.t1"; gene_id "2L-_file_1_file_1_g5328"; +2L AUGUSTUS stop_codon 26521 26523 . - 0 transcript_id "2L-_file_1_file_1_g5329.t1"; gene_id "2L-_file_1_file_1_g5329"; +2L AUGUSTUS CDS 26521 26688 1 - 0 transcript_id "2L-_file_1_file_1_g5329.t1"; gene_id "2L-_file_1_file_1_g5329"; +2L AUGUSTUS exon 26521 26688 . - . transcript_id "2L-_file_1_file_1_g5329.t1"; gene_id "2L-_file_1_file_1_g5329"; +2L AUGUSTUS intron 26689 26765 1 - . transcript_id "2L-_file_1_file_1_g5329.t1"; gene_id "2L-_file_1_file_1_g5329"; +2L AUGUSTUS CDS 26766 26964 1 - 1 transcript_id "2L-_file_1_file_1_g5329.t1"; gene_id "2L-_file_1_file_1_g5329"; +2L AUGUSTUS exon 26766 26964 . - . transcript_id "2L-_file_1_file_1_g5329.t1"; gene_id "2L-_file_1_file_1_g5329"; +2L AUGUSTUS intron 26965 27052 1 - . transcript_id "2L-_file_1_file_1_g5329.t1"; gene_id "2L-_file_1_file_1_g5329"; +2L AUGUSTUS CDS 27053 27490 1 - 1 transcript_id "2L-_file_1_file_1_g5329.t1"; gene_id "2L-_file_1_file_1_g5329"; +2L AUGUSTUS exon 27053 27490 . - . transcript_id "2L-_file_1_file_1_g5329.t1"; gene_id "2L-_file_1_file_1_g5329"; +2L AUGUSTUS intron 27491 28014 1 - . transcript_id "2L-_file_1_file_1_g5329.t1"; gene_id "2L-_file_1_file_1_g5329"; +2L AUGUSTUS CDS 28015 28240 1 - 2 transcript_id "2L-_file_1_file_1_g5329.t1"; gene_id "2L-_file_1_file_1_g5329"; +2L AUGUSTUS exon 28015 28240 . - . transcript_id "2L-_file_1_file_1_g5329.t1"; gene_id "2L-_file_1_file_1_g5329"; +2L AUGUSTUS intron 28241 28732 1 - . transcript_id "2L-_file_1_file_1_g5329.t1"; gene_id "2L-_file_1_file_1_g5329"; +2L AUGUSTUS CDS 28733 28926 1 - 1 transcript_id "2L-_file_1_file_1_g5329.t1"; gene_id "2L-_file_1_file_1_g5329"; +2L AUGUSTUS exon 28733 28926 . - . transcript_id "2L-_file_1_file_1_g5329.t1"; gene_id "2L-_file_1_file_1_g5329"; +2L AUGUSTUS intron 28927 28981 1 - . transcript_id "2L-_file_1_file_1_g5329.t1"; gene_id "2L-_file_1_file_1_g5329"; +2L AUGUSTUS CDS 28982 29068 1 - 1 transcript_id "2L-_file_1_file_1_g5329.t1"; gene_id "2L-_file_1_file_1_g5329"; +2L AUGUSTUS exon 28982 29068 . - . transcript_id "2L-_file_1_file_1_g5329.t1"; gene_id "2L-_file_1_file_1_g5329"; +2L AUGUSTUS intron 29069 30393 1 - . transcript_id "2L-_file_1_file_1_g5329.t1"; gene_id "2L-_file_1_file_1_g5329"; +2L AUGUSTUS CDS 30394 30673 0.48 - 2 transcript_id "2L-_file_1_file_1_g5329.t1"; gene_id "2L-_file_1_file_1_g5329"; +2L AUGUSTUS exon 30394 30673 . - . transcript_id "2L-_file_1_file_1_g5329.t1"; gene_id "2L-_file_1_file_1_g5329"; +2L AUGUSTUS intron 30674 32521 0.45 - . transcript_id "2L-_file_1_file_1_g5329.t1"; gene_id "2L-_file_1_file_1_g5329"; +2L AUGUSTUS CDS 32522 33005 0.84 - 0 transcript_id "2L-_file_1_file_1_g5329.t1"; gene_id "2L-_file_1_file_1_g5329"; +2L AUGUSTUS exon 32522 33005 . - . transcript_id "2L-_file_1_file_1_g5329.t1"; gene_id "2L-_file_1_file_1_g5329"; +2L AUGUSTUS intron 33006 33918 0.95 - . transcript_id "2L-_file_1_file_1_g5329.t1"; gene_id "2L-_file_1_file_1_g5329"; +2L AUGUSTUS CDS 33919 34288 0.95 - 1 transcript_id "2L-_file_1_file_1_g5329.t1"; gene_id "2L-_file_1_file_1_g5329"; +2L AUGUSTUS exon 33919 34288 . - . transcript_id "2L-_file_1_file_1_g5329.t1"; gene_id "2L-_file_1_file_1_g5329"; +2L AUGUSTUS intron 34289 34557 1 - . transcript_id "2L-_file_1_file_1_g5329.t1"; gene_id "2L-_file_1_file_1_g5329"; +2L AUGUSTUS CDS 34558 34604 1 - 0 transcript_id "2L-_file_1_file_1_g5329.t1"; gene_id "2L-_file_1_file_1_g5329"; +2L AUGUSTUS exon 34558 34604 . - . transcript_id "2L-_file_1_file_1_g5329.t1"; gene_id "2L-_file_1_file_1_g5329"; +2L AUGUSTUS intron 34605 34719 1 - . transcript_id "2L-_file_1_file_1_g5329.t1"; gene_id "2L-_file_1_file_1_g5329"; +2L AUGUSTUS CDS 34720 34912 0.62 - 1 transcript_id "2L-_file_1_file_1_g5329.t1"; gene_id "2L-_file_1_file_1_g5329"; +2L AUGUSTUS exon 34720 34912 . - . transcript_id "2L-_file_1_file_1_g5329.t1"; gene_id "2L-_file_1_file_1_g5329"; +2L AUGUSTUS intron 34913 35745 0.62 - . transcript_id "2L-_file_1_file_1_g5329.t1"; gene_id "2L-_file_1_file_1_g5329"; +2L AUGUSTUS CDS 35746 38088 0.28 - 1 transcript_id "2L-_file_1_file_1_g5329.t1"; gene_id "2L-_file_1_file_1_g5329"; +2L AUGUSTUS exon 35746 38088 . - . transcript_id "2L-_file_1_file_1_g5329.t1"; gene_id "2L-_file_1_file_1_g5329"; +2L AUGUSTUS intron 38089 38534 0.46 - . transcript_id "2L-_file_1_file_1_g5329.t1"; gene_id "2L-_file_1_file_1_g5329"; +2L AUGUSTUS CDS 38535 38731 0.53 - 0 transcript_id "2L-_file_1_file_1_g5329.t1"; gene_id "2L-_file_1_file_1_g5329"; +2L AUGUSTUS exon 38535 38731 . - . transcript_id "2L-_file_1_file_1_g5329.t1"; gene_id "2L-_file_1_file_1_g5329"; +2L AUGUSTUS intron 38732 39300 1 - . transcript_id "2L-_file_1_file_1_g5329.t1"; gene_id "2L-_file_1_file_1_g5329"; +2L AUGUSTUS CDS 39301 39857 1 - 2 transcript_id "2L-_file_1_file_1_g5329.t1"; gene_id "2L-_file_1_file_1_g5329"; +2L AUGUSTUS exon 39301 39857 . - . transcript_id "2L-_file_1_file_1_g5329.t1"; gene_id "2L-_file_1_file_1_g5329"; +2L AUGUSTUS intron 39858 58080 1 - . transcript_id "2L-_file_1_file_1_g5329.t1"; gene_id "2L-_file_1_file_1_g5329"; +2L AUGUSTUS CDS 58081 58150 1 - 0 transcript_id "2L-_file_1_file_1_g5329.t1"; gene_id "2L-_file_1_file_1_g5329"; +2L AUGUSTUS exon 58081 58150 . - . transcript_id "2L-_file_1_file_1_g5329.t1"; gene_id "2L-_file_1_file_1_g5329"; +2L AUGUSTUS start_codon 58148 58150 . - 0 transcript_id "2L-_file_1_file_1_g5329.t1"; gene_id "2L-_file_1_file_1_g5329"; +2L AUGUSTUS start_codon 67625 67627 . + 0 transcript_id "2L+_file_1_file_1_g5330.t1"; gene_id "2L+_file_1_file_1_g5330"; +2L AUGUSTUS CDS 67625 67762 1 + 0 transcript_id "2L+_file_1_file_1_g5330.t1"; gene_id "2L+_file_1_file_1_g5330"; +2L AUGUSTUS exon 67625 67762 . + . transcript_id "2L+_file_1_file_1_g5330.t1"; gene_id "2L+_file_1_file_1_g5330"; +2L AUGUSTUS intron 67763 67891 1 + . transcript_id "2L+_file_1_file_1_g5330.t1"; gene_id "2L+_file_1_file_1_g5330"; +2L AUGUSTUS CDS 67892 68023 1 + 0 transcript_id "2L+_file_1_file_1_g5330.t1"; gene_id "2L+_file_1_file_1_g5330"; +2L AUGUSTUS exon 67892 68023 . + . transcript_id "2L+_file_1_file_1_g5330.t1"; gene_id "2L+_file_1_file_1_g5330"; +2L AUGUSTUS intron 68024 68084 1 + . transcript_id "2L+_file_1_file_1_g5330.t1"; gene_id "2L+_file_1_file_1_g5330"; +2L AUGUSTUS CDS 68085 68386 0.94 + 0 transcript_id "2L+_file_1_file_1_g5330.t1"; gene_id "2L+_file_1_file_1_g5330"; +2L AUGUSTUS exon 68085 68386 . + . transcript_id "2L+_file_1_file_1_g5330.t1"; gene_id "2L+_file_1_file_1_g5330"; +2L AUGUSTUS intron 68387 70048 0.23 + . transcript_id "2L+_file_1_file_1_g5330.t1"; gene_id "2L+_file_1_file_1_g5330"; +2L AUGUSTUS CDS 70049 70549 0.23 + 1 transcript_id "2L+_file_1_file_1_g5330.t1"; gene_id "2L+_file_1_file_1_g5330"; +2L AUGUSTUS exon 70049 70549 . + . transcript_id "2L+_file_1_file_1_g5330.t1"; gene_id "2L+_file_1_file_1_g5330"; +2L AUGUSTUS intron 70550 70606 1 + . transcript_id "2L+_file_1_file_1_g5330.t1"; gene_id "2L+_file_1_file_1_g5330"; +2L AUGUSTUS CDS 70607 70895 1 + 1 transcript_id "2L+_file_1_file_1_g5330.t1"; gene_id "2L+_file_1_file_1_g5330"; +2L AUGUSTUS exon 70607 70895 . + . transcript_id "2L+_file_1_file_1_g5330.t1"; gene_id "2L+_file_1_file_1_g5330"; +2L AUGUSTUS stop_codon 70893 70895 . + 0 transcript_id "2L+_file_1_file_1_g5330.t1"; gene_id "2L+_file_1_file_1_g5330"; +2L AUGUSTUS start_codon 72792 72794 . + 0 transcript_id "2L+_file_1_file_1_g5331.t1"; gene_id "2L+_file_1_file_1_g5331"; +2L AUGUSTUS start_codon 72792 72794 . + 0 transcript_id "2L+_file_1_file_1_g5331.t2"; gene_id "2L+_file_1_file_1_g5331"; +2L AUGUSTUS CDS 72792 72977 0.51 + 0 transcript_id "2L+_file_1_file_1_g5331.t2"; gene_id "2L+_file_1_file_1_g5331"; +2L AUGUSTUS CDS 72792 72977 0.52 + 0 transcript_id "2L+_file_1_file_1_g5331.t1"; gene_id "2L+_file_1_file_1_g5331"; +2L AUGUSTUS exon 72792 72977 . + . transcript_id "2L+_file_1_file_1_g5331.t1"; gene_id "2L+_file_1_file_1_g5331"; +2L AUGUSTUS exon 72792 72977 . + . transcript_id "2L+_file_1_file_1_g5331.t2"; gene_id "2L+_file_1_file_1_g5331"; +2L AUGUSTUS intron 72978 74902 1 + . transcript_id "2L+_file_1_file_1_g5331.t1"; gene_id "2L+_file_1_file_1_g5331"; +2L AUGUSTUS intron 72978 74902 1 + . transcript_id "2L+_file_1_file_1_g5331.t2"; gene_id "2L+_file_1_file_1_g5331"; +2L AUGUSTUS start_codon 73570 73572 . + 0 transcript_id "2L+_file_1_file_1_g5331.t4"; gene_id "2L+_file_1_file_1_g5331"; +2L AUGUSTUS CDS 73570 73692 0.76 + 0 transcript_id "2L+_file_1_file_1_g5331.t4"; gene_id "2L+_file_1_file_1_g5331"; +2L AUGUSTUS exon 73570 73692 . + . transcript_id "2L+_file_1_file_1_g5331.t4"; gene_id "2L+_file_1_file_1_g5331"; +2L AUGUSTUS intron 73693 74902 1 + . transcript_id "2L+_file_1_file_1_g5331.t4"; gene_id "2L+_file_1_file_1_g5331"; +2L AUGUSTUS start_codon 74528 74530 . + 0 transcript_id "2L+_file_1_file_1_g5331.t3"; gene_id "2L+_file_1_file_1_g5331"; +2L AUGUSTUS CDS 74528 74572 0.84 + 0 transcript_id "2L+_file_1_file_1_g5331.t3"; gene_id "2L+_file_1_file_1_g5331"; +2L AUGUSTUS exon 74528 74572 . + . transcript_id "2L+_file_1_file_1_g5331.t3"; gene_id "2L+_file_1_file_1_g5331"; +2L AUGUSTUS intron 74573 74902 0.97 + . transcript_id "2L+_file_1_file_1_g5331.t3"; gene_id "2L+_file_1_file_1_g5331"; +2L AUGUSTUS CDS 74903 75018 1 + 0 transcript_id "2L+_file_1_file_1_g5331.t1"; gene_id "2L+_file_1_file_1_g5331"; +2L AUGUSTUS CDS 74903 75018 1 + 0 transcript_id "2L+_file_1_file_1_g5331.t2"; gene_id "2L+_file_1_file_1_g5331"; +2L AUGUSTUS CDS 74903 75018 1 + 0 transcript_id "2L+_file_1_file_1_g5331.t3"; gene_id "2L+_file_1_file_1_g5331"; +2L AUGUSTUS CDS 74903 75018 1 + 0 transcript_id "2L+_file_1_file_1_g5331.t4"; gene_id "2L+_file_1_file_1_g5331"; +2L AUGUSTUS exon 74903 75018 . + . transcript_id "2L+_file_1_file_1_g5331.t1"; gene_id "2L+_file_1_file_1_g5331"; +2L AUGUSTUS exon 74903 75018 . + . transcript_id "2L+_file_1_file_1_g5331.t2"; gene_id "2L+_file_1_file_1_g5331"; +2L AUGUSTUS exon 74903 75018 . + . transcript_id "2L+_file_1_file_1_g5331.t3"; gene_id "2L+_file_1_file_1_g5331"; +2L AUGUSTUS exon 74903 75018 . + . transcript_id "2L+_file_1_file_1_g5331.t4"; gene_id "2L+_file_1_file_1_g5331"; +2L AUGUSTUS intron 75019 75077 1 + . transcript_id "2L+_file_1_file_1_g5331.t1"; gene_id "2L+_file_1_file_1_g5331"; +2L AUGUSTUS intron 75019 75077 1 + . transcript_id "2L+_file_1_file_1_g5331.t2"; gene_id "2L+_file_1_file_1_g5331"; +2L AUGUSTUS intron 75019 75077 1 + . transcript_id "2L+_file_1_file_1_g5331.t3"; gene_id "2L+_file_1_file_1_g5331"; +2L AUGUSTUS intron 75019 75077 1 + . transcript_id "2L+_file_1_file_1_g5331.t4"; gene_id "2L+_file_1_file_1_g5331"; +2L AUGUSTUS CDS 75078 75366 1 + 1 transcript_id "2L+_file_1_file_1_g5331.t1"; gene_id "2L+_file_1_file_1_g5331"; +2L AUGUSTUS CDS 75078 75366 1 + 1 transcript_id "2L+_file_1_file_1_g5331.t2"; gene_id "2L+_file_1_file_1_g5331"; +2L AUGUSTUS CDS 75078 75366 1 + 1 transcript_id "2L+_file_1_file_1_g5331.t3"; gene_id "2L+_file_1_file_1_g5331"; +2L AUGUSTUS CDS 75078 75366 1 + 1 transcript_id "2L+_file_1_file_1_g5331.t4"; gene_id "2L+_file_1_file_1_g5331"; +2L AUGUSTUS exon 75078 75366 . + . transcript_id "2L+_file_1_file_1_g5331.t1"; gene_id "2L+_file_1_file_1_g5331"; +2L AUGUSTUS exon 75078 75366 . + . transcript_id "2L+_file_1_file_1_g5331.t2"; gene_id "2L+_file_1_file_1_g5331"; +2L AUGUSTUS exon 75078 75366 . + . transcript_id "2L+_file_1_file_1_g5331.t3"; gene_id "2L+_file_1_file_1_g5331"; +2L AUGUSTUS exon 75078 75366 . + . transcript_id "2L+_file_1_file_1_g5331.t4"; gene_id "2L+_file_1_file_1_g5331"; +2L AUGUSTUS intron 75367 75426 1 + . transcript_id "2L+_file_1_file_1_g5331.t2"; gene_id "2L+_file_1_file_1_g5331"; +2L AUGUSTUS intron 75367 75426 1 + . transcript_id "2L+_file_1_file_1_g5331.t3"; gene_id "2L+_file_1_file_1_g5331"; +2L AUGUSTUS intron 75367 75426 1 + . transcript_id "2L+_file_1_file_1_g5331.t4"; gene_id "2L+_file_1_file_1_g5331"; +2L AUGUSTUS intron 75367 77480 0.99 + . transcript_id "2L+_file_1_file_1_g5331.t1"; gene_id "2L+_file_1_file_1_g5331"; +2L AUGUSTUS CDS 75427 75565 0.44 + 0 transcript_id "2L+_file_1_file_1_g5331.t4"; gene_id "2L+_file_1_file_1_g5331"; +2L AUGUSTUS CDS 75427 75565 0.5 + 0 transcript_id "2L+_file_1_file_1_g5331.t3"; gene_id "2L+_file_1_file_1_g5331"; +2L AUGUSTUS CDS 75427 75565 0.56 + 0 transcript_id "2L+_file_1_file_1_g5331.t2"; gene_id "2L+_file_1_file_1_g5331"; +2L AUGUSTUS exon 75427 75565 . + . transcript_id "2L+_file_1_file_1_g5331.t2"; gene_id "2L+_file_1_file_1_g5331"; +2L AUGUSTUS exon 75427 75565 . + . transcript_id "2L+_file_1_file_1_g5331.t3"; gene_id "2L+_file_1_file_1_g5331"; +2L AUGUSTUS exon 75427 75565 . + . transcript_id "2L+_file_1_file_1_g5331.t4"; gene_id "2L+_file_1_file_1_g5331"; +2L AUGUSTUS intron 75566 78036 0.29 + . transcript_id "2L+_file_1_file_1_g5331.t4"; gene_id "2L+_file_1_file_1_g5331"; +2L AUGUSTUS intron 75566 78036 0.33 + . transcript_id "2L+_file_1_file_1_g5331.t2"; gene_id "2L+_file_1_file_1_g5331"; +2L AUGUSTUS intron 75566 78036 0.35 + . transcript_id "2L+_file_1_file_1_g5331.t3"; gene_id "2L+_file_1_file_1_g5331"; +2L AUGUSTUS CDS 77481 77583 0.99 + 0 transcript_id "2L+_file_1_file_1_g5331.t1"; gene_id "2L+_file_1_file_1_g5331"; +2L AUGUSTUS exon 77481 77583 . + . transcript_id "2L+_file_1_file_1_g5331.t1"; gene_id "2L+_file_1_file_1_g5331"; +2L AUGUSTUS intron 77584 77641 0.99 + . transcript_id "2L+_file_1_file_1_g5331.t1"; gene_id "2L+_file_1_file_1_g5331"; +2L AUGUSTUS CDS 77642 77709 0.99 + 2 transcript_id "2L+_file_1_file_1_g5331.t1"; gene_id "2L+_file_1_file_1_g5331"; +2L AUGUSTUS exon 77642 77709 . + . transcript_id "2L+_file_1_file_1_g5331.t1"; gene_id "2L+_file_1_file_1_g5331"; +2L AUGUSTUS stop_codon 77707 77709 . + 0 transcript_id "2L+_file_1_file_1_g5331.t1"; gene_id "2L+_file_1_file_1_g5331"; +2L AUGUSTUS CDS 78037 78086 0.35 + 2 transcript_id "2L+_file_1_file_1_g5331.t4"; gene_id "2L+_file_1_file_1_g5331"; +2L AUGUSTUS CDS 78037 78086 0.37 + 2 transcript_id "2L+_file_1_file_1_g5331.t2"; gene_id "2L+_file_1_file_1_g5331"; +2L AUGUSTUS CDS 78037 78086 0.38 + 2 transcript_id "2L+_file_1_file_1_g5331.t3"; gene_id "2L+_file_1_file_1_g5331"; +2L AUGUSTUS exon 78037 78086 . + . transcript_id "2L+_file_1_file_1_g5331.t2"; gene_id "2L+_file_1_file_1_g5331"; +2L AUGUSTUS exon 78037 78086 . + . transcript_id "2L+_file_1_file_1_g5331.t3"; gene_id "2L+_file_1_file_1_g5331"; +2L AUGUSTUS exon 78037 78086 . + . transcript_id "2L+_file_1_file_1_g5331.t4"; gene_id "2L+_file_1_file_1_g5331"; +2L AUGUSTUS stop_codon 78084 78086 . + 0 transcript_id "2L+_file_1_file_1_g5331.t2"; gene_id "2L+_file_1_file_1_g5331"; +2L AUGUSTUS stop_codon 78084 78086 . + 0 transcript_id "2L+_file_1_file_1_g5331.t3"; gene_id "2L+_file_1_file_1_g5331"; +2L AUGUSTUS stop_codon 78084 78086 . + 0 transcript_id "2L+_file_1_file_1_g5331.t4"; gene_id "2L+_file_1_file_1_g5331"; +2L AUGUSTUS stop_codon 83268 83270 . - 0 transcript_id "2L-_file_1_file_1_g5332.t1"; gene_id "2L-_file_1_file_1_g5332"; +2L AUGUSTUS CDS 83268 84277 1 - 2 transcript_id "2L-_file_1_file_1_g5332.t1"; gene_id "2L-_file_1_file_1_g5332"; +2L AUGUSTUS exon 83268 84277 . - . transcript_id "2L-_file_1_file_1_g5332.t1"; gene_id "2L-_file_1_file_1_g5332"; +2L AUGUSTUS intron 84278 87019 1 - . transcript_id "2L-_file_1_file_1_g5332.t1"; gene_id "2L-_file_1_file_1_g5332"; +2L AUGUSTUS CDS 87020 87026 0.88 - 0 transcript_id "2L-_file_1_file_1_g5332.t1"; gene_id "2L-_file_1_file_1_g5332"; +2L AUGUSTUS exon 87020 87026 . - . transcript_id "2L-_file_1_file_1_g5332.t1"; gene_id "2L-_file_1_file_1_g5332"; +2L AUGUSTUS start_codon 87024 87026 . - 0 transcript_id "2L-_file_1_file_1_g5332.t1"; gene_id "2L-_file_1_file_1_g5332"; +2L AUGUSTUS start_codon 94852 94854 . + 0 transcript_id "2L+_file_1_file_1_g5333.t1"; gene_id "2L+_file_1_file_1_g5333"; +2L AUGUSTUS CDS 94852 94892 1 + 0 transcript_id "2L+_file_1_file_1_g5333.t1"; gene_id "2L+_file_1_file_1_g5333"; +2L AUGUSTUS exon 94852 94892 . + . transcript_id "2L+_file_1_file_1_g5333.t1"; gene_id "2L+_file_1_file_1_g5333"; +2L AUGUSTUS intron 94893 94988 1 + . transcript_id "2L+_file_1_file_1_g5333.t1"; gene_id "2L+_file_1_file_1_g5333"; +2L AUGUSTUS CDS 94989 95070 1 + 1 transcript_id "2L+_file_1_file_1_g5333.t1"; gene_id "2L+_file_1_file_1_g5333"; +2L AUGUSTUS exon 94989 95070 . + . transcript_id "2L+_file_1_file_1_g5333.t1"; gene_id "2L+_file_1_file_1_g5333"; +2L AUGUSTUS intron 95071 95131 1 + . transcript_id "2L+_file_1_file_1_g5333.t1"; gene_id "2L+_file_1_file_1_g5333"; +2L AUGUSTUS CDS 95132 95301 1 + 0 transcript_id "2L+_file_1_file_1_g5333.t1"; gene_id "2L+_file_1_file_1_g5333"; +2L AUGUSTUS exon 95132 95301 . + . transcript_id "2L+_file_1_file_1_g5333.t1"; gene_id "2L+_file_1_file_1_g5333"; +2L AUGUSTUS intron 95302 95353 1 + . transcript_id "2L+_file_1_file_1_g5333.t1"; gene_id "2L+_file_1_file_1_g5333"; +2L AUGUSTUS CDS 95354 95870 0.55 + 1 transcript_id "2L+_file_1_file_1_g5333.t1"; gene_id "2L+_file_1_file_1_g5333"; +2L AUGUSTUS exon 95354 95870 . + . transcript_id "2L+_file_1_file_1_g5333.t1"; gene_id "2L+_file_1_file_1_g5333"; +2L AUGUSTUS intron 95871 97806 0.55 + . transcript_id "2L+_file_1_file_1_g5333.t1"; gene_id "2L+_file_1_file_1_g5333"; +2L AUGUSTUS CDS 97807 97833 1 + 0 transcript_id "2L+_file_1_file_1_g5333.t1"; gene_id "2L+_file_1_file_1_g5333"; +2L AUGUSTUS exon 97807 97833 . + . transcript_id "2L+_file_1_file_1_g5333.t1"; gene_id "2L+_file_1_file_1_g5333"; +2L AUGUSTUS intron 97834 97883 1 + . transcript_id "2L+_file_1_file_1_g5333.t1"; gene_id "2L+_file_1_file_1_g5333"; +2L AUGUSTUS CDS 97884 97895 1 + 0 transcript_id "2L+_file_1_file_1_g5333.t1"; gene_id "2L+_file_1_file_1_g5333"; +2L AUGUSTUS exon 97884 97895 . + . transcript_id "2L+_file_1_file_1_g5333.t1"; gene_id "2L+_file_1_file_1_g5333"; +2L AUGUSTUS stop_codon 97893 97895 . + 0 transcript_id "2L+_file_1_file_1_g5333.t1"; gene_id "2L+_file_1_file_1_g5333"; +2L AUGUSTUS start_codon 99307 99309 . + 0 transcript_id "2L+_file_1_file_1_g5334.t1"; gene_id "2L+_file_1_file_1_g5334"; +2L AUGUSTUS CDS 99307 99346 0.99 + 0 transcript_id "2L+_file_1_file_1_g5334.t1"; gene_id "2L+_file_1_file_1_g5334"; +2L AUGUSTUS exon 99307 99346 . + . transcript_id "2L+_file_1_file_1_g5334.t1"; gene_id "2L+_file_1_file_1_g5334"; +2L AUGUSTUS intron 99347 99658 0.99 + . transcript_id "2L+_file_1_file_1_g5334.t1"; gene_id "2L+_file_1_file_1_g5334"; +2L AUGUSTUS CDS 99659 99723 0.99 + 2 transcript_id "2L+_file_1_file_1_g5334.t1"; gene_id "2L+_file_1_file_1_g5334"; +2L AUGUSTUS exon 99659 99723 . + . transcript_id "2L+_file_1_file_1_g5334.t1"; gene_id "2L+_file_1_file_1_g5334"; +2L AUGUSTUS intron 99724 99784 1 + . transcript_id "2L+_file_1_file_1_g5334.t1"; gene_id "2L+_file_1_file_1_g5334"; +2L AUGUSTUS CDS 99785 99943 0.52 + 0 transcript_id "2L+_file_1_file_1_g5334.t1"; gene_id "2L+_file_1_file_1_g5334"; +2L AUGUSTUS exon 99785 99943 . + . transcript_id "2L+_file_1_file_1_g5334.t1"; gene_id "2L+_file_1_file_1_g5334"; +2L AUGUSTUS intron 99944 100459 0.23 + . transcript_id "2L+_file_1_file_1_g5334.t1"; gene_id "2L+_file_1_file_1_g5334"; +2L AUGUSTUS CDS 100460 100516 0.25 + 0 transcript_id "2L+_file_1_file_1_g5334.t1"; gene_id "2L+_file_1_file_1_g5334"; +2L AUGUSTUS exon 100460 100516 . + . transcript_id "2L+_file_1_file_1_g5334.t1"; gene_id "2L+_file_1_file_1_g5334"; +2L AUGUSTUS intron 100517 100571 1 + . transcript_id "2L+_file_1_file_1_g5334.t1"; gene_id "2L+_file_1_file_1_g5334"; +2L AUGUSTUS CDS 100572 100703 1 + 0 transcript_id "2L+_file_1_file_1_g5334.t1"; gene_id "2L+_file_1_file_1_g5334"; +2L AUGUSTUS exon 100572 100703 . + . transcript_id "2L+_file_1_file_1_g5334.t1"; gene_id "2L+_file_1_file_1_g5334"; +2L AUGUSTUS intron 100704 100761 1 + . transcript_id "2L+_file_1_file_1_g5334.t1"; gene_id "2L+_file_1_file_1_g5334"; +2L AUGUSTUS CDS 100762 100942 1 + 0 transcript_id "2L+_file_1_file_1_g5334.t1"; gene_id "2L+_file_1_file_1_g5334"; +2L AUGUSTUS exon 100762 100942 . + . transcript_id "2L+_file_1_file_1_g5334.t1"; gene_id "2L+_file_1_file_1_g5334"; +2L AUGUSTUS intron 100943 101015 1 + . transcript_id "2L+_file_1_file_1_g5334.t1"; gene_id "2L+_file_1_file_1_g5334"; +2L AUGUSTUS CDS 101016 101194 1 + 2 transcript_id "2L+_file_1_file_1_g5334.t1"; gene_id "2L+_file_1_file_1_g5334"; +2L AUGUSTUS exon 101016 101194 . + . transcript_id "2L+_file_1_file_1_g5334.t1"; gene_id "2L+_file_1_file_1_g5334"; +2L AUGUSTUS intron 101195 101248 1 + . transcript_id "2L+_file_1_file_1_g5334.t1"; gene_id "2L+_file_1_file_1_g5334"; +2L AUGUSTUS CDS 101249 101378 0.58 + 0 transcript_id "2L+_file_1_file_1_g5334.t1"; gene_id "2L+_file_1_file_1_g5334"; +2L AUGUSTUS exon 101249 101378 . + . transcript_id "2L+_file_1_file_1_g5334.t1"; gene_id "2L+_file_1_file_1_g5334"; +2L AUGUSTUS intron 101379 101513 0.46 + . transcript_id "2L+_file_1_file_1_g5334.t1"; gene_id "2L+_file_1_file_1_g5334"; +2L AUGUSTUS CDS 101514 101619 0.46 + 2 transcript_id "2L+_file_1_file_1_g5334.t1"; gene_id "2L+_file_1_file_1_g5334"; +2L AUGUSTUS exon 101514 101619 . + . transcript_id "2L+_file_1_file_1_g5334.t1"; gene_id "2L+_file_1_file_1_g5334"; +2L AUGUSTUS intron 101620 101875 1 + . transcript_id "2L+_file_1_file_1_g5334.t1"; gene_id "2L+_file_1_file_1_g5334"; +2L AUGUSTUS CDS 101876 101914 1 + 1 transcript_id "2L+_file_1_file_1_g5334.t1"; gene_id "2L+_file_1_file_1_g5334"; +2L AUGUSTUS exon 101876 101914 . + . transcript_id "2L+_file_1_file_1_g5334.t1"; gene_id "2L+_file_1_file_1_g5334"; +2L AUGUSTUS intron 101915 101978 1 + . transcript_id "2L+_file_1_file_1_g5334.t1"; gene_id "2L+_file_1_file_1_g5334"; +2L AUGUSTUS CDS 101979 101996 0.99 + 1 transcript_id "2L+_file_1_file_1_g5334.t1"; gene_id "2L+_file_1_file_1_g5334"; +2L AUGUSTUS exon 101979 101996 . + . transcript_id "2L+_file_1_file_1_g5334.t1"; gene_id "2L+_file_1_file_1_g5334"; +2L AUGUSTUS intron 101997 102583 0.65 + . transcript_id "2L+_file_1_file_1_g5334.t1"; gene_id "2L+_file_1_file_1_g5334"; +2L AUGUSTUS CDS 102584 102906 0.65 + 1 transcript_id "2L+_file_1_file_1_g5334.t1"; gene_id "2L+_file_1_file_1_g5334"; +2L AUGUSTUS exon 102584 102906 . + . transcript_id "2L+_file_1_file_1_g5334.t1"; gene_id "2L+_file_1_file_1_g5334"; +2L AUGUSTUS intron 102907 103005 1 + . transcript_id "2L+_file_1_file_1_g5334.t1"; gene_id "2L+_file_1_file_1_g5334"; +2L AUGUSTUS CDS 103006 103434 1 + 2 transcript_id "2L+_file_1_file_1_g5334.t1"; gene_id "2L+_file_1_file_1_g5334"; +2L AUGUSTUS exon 103006 103434 . + . transcript_id "2L+_file_1_file_1_g5334.t1"; gene_id "2L+_file_1_file_1_g5334"; +2L AUGUSTUS intron 103435 103515 1 + . transcript_id "2L+_file_1_file_1_g5334.t1"; gene_id "2L+_file_1_file_1_g5334"; +2L AUGUSTUS CDS 103516 103763 1 + 2 transcript_id "2L+_file_1_file_1_g5334.t1"; gene_id "2L+_file_1_file_1_g5334"; +2L AUGUSTUS exon 103516 103763 . + . transcript_id "2L+_file_1_file_1_g5334.t1"; gene_id "2L+_file_1_file_1_g5334"; +2L AUGUSTUS stop_codon 103761 103763 . + 0 transcript_id "2L+_file_1_file_1_g5334.t1"; gene_id "2L+_file_1_file_1_g5334"; +2L AUGUSTUS stop_codon 104473 104475 . - 0 transcript_id "2L-_file_1_file_1_g5335.t1"; gene_id "2L-_file_1_file_1_g5335"; +2L AUGUSTUS CDS 104473 104947 1 - 1 transcript_id "2L-_file_1_file_1_g5335.t1"; gene_id "2L-_file_1_file_1_g5335"; +2L AUGUSTUS exon 104473 104947 . - . transcript_id "2L-_file_1_file_1_g5335.t1"; gene_id "2L-_file_1_file_1_g5335"; +2L AUGUSTUS intron 104948 105004 1 - . transcript_id "2L-_file_1_file_1_g5335.t1"; gene_id "2L-_file_1_file_1_g5335"; +2L AUGUSTUS CDS 105005 105336 0.97 - 0 transcript_id "2L-_file_1_file_1_g5335.t1"; gene_id "2L-_file_1_file_1_g5335"; +2L AUGUSTUS exon 105005 105336 . - . transcript_id "2L-_file_1_file_1_g5335.t1"; gene_id "2L-_file_1_file_1_g5335"; +2L AUGUSTUS intron 105337 105390 1 - . transcript_id "2L-_file_1_file_1_g5335.t1"; gene_id "2L-_file_1_file_1_g5335"; +2L AUGUSTUS CDS 105391 105455 1 - 2 transcript_id "2L-_file_1_file_1_g5335.t1"; gene_id "2L-_file_1_file_1_g5335"; +2L AUGUSTUS exon 105391 105455 . - . transcript_id "2L-_file_1_file_1_g5335.t1"; gene_id "2L-_file_1_file_1_g5335"; +2L AUGUSTUS intron 105456 105511 1 - . transcript_id "2L-_file_1_file_1_g5335.t1"; gene_id "2L-_file_1_file_1_g5335"; +2L AUGUSTUS CDS 105512 105915 1 - 1 transcript_id "2L-_file_1_file_1_g5335.t1"; gene_id "2L-_file_1_file_1_g5335"; +2L AUGUSTUS exon 105512 105915 . - . transcript_id "2L-_file_1_file_1_g5335.t1"; gene_id "2L-_file_1_file_1_g5335"; +2L AUGUSTUS intron 105916 105968 1 - . transcript_id "2L-_file_1_file_1_g5335.t1"; gene_id "2L-_file_1_file_1_g5335"; +2L AUGUSTUS CDS 105969 106642 1 - 0 transcript_id "2L-_file_1_file_1_g5335.t1"; gene_id "2L-_file_1_file_1_g5335"; +2L AUGUSTUS exon 105969 106642 . - . transcript_id "2L-_file_1_file_1_g5335.t1"; gene_id "2L-_file_1_file_1_g5335"; +2L AUGUSTUS start_codon 106640 106642 . - 0 transcript_id "2L-_file_1_file_1_g5335.t1"; gene_id "2L-_file_1_file_1_g5335"; +2L AUGUSTUS start_codon 108686 108688 . + 0 transcript_id "2L+_file_1_file_1_g5336.t1"; gene_id "2L+_file_1_file_1_g5336"; +2L AUGUSTUS start_codon 108686 108688 . + 0 transcript_id "2L+_file_1_file_1_g5336.t2"; gene_id "2L+_file_1_file_1_g5336"; +2L AUGUSTUS start_codon 108686 108688 . + 0 transcript_id "2L+_file_1_file_1_g5336.t3"; gene_id "2L+_file_1_file_1_g5336"; +2L AUGUSTUS CDS 108686 108809 1 + 0 transcript_id "2L+_file_1_file_1_g5336.t1"; gene_id "2L+_file_1_file_1_g5336"; +2L AUGUSTUS CDS 108686 108809 1 + 0 transcript_id "2L+_file_1_file_1_g5336.t2"; gene_id "2L+_file_1_file_1_g5336"; +2L AUGUSTUS CDS 108686 108809 1 + 0 transcript_id "2L+_file_1_file_1_g5336.t3"; gene_id "2L+_file_1_file_1_g5336"; +2L AUGUSTUS exon 108686 108809 . + . transcript_id "2L+_file_1_file_1_g5336.t1"; gene_id "2L+_file_1_file_1_g5336"; +2L AUGUSTUS exon 108686 108809 . + . transcript_id "2L+_file_1_file_1_g5336.t2"; gene_id "2L+_file_1_file_1_g5336"; +2L AUGUSTUS exon 108686 108809 . + . transcript_id "2L+_file_1_file_1_g5336.t3"; gene_id "2L+_file_1_file_1_g5336"; +2L AUGUSTUS intron 108810 110405 1 + . transcript_id "2L+_file_1_file_1_g5336.t1"; gene_id "2L+_file_1_file_1_g5336"; +2L AUGUSTUS intron 108810 110405 1 + . transcript_id "2L+_file_1_file_1_g5336.t2"; gene_id "2L+_file_1_file_1_g5336"; +2L AUGUSTUS intron 108810 110405 1 + . transcript_id "2L+_file_1_file_1_g5336.t3"; gene_id "2L+_file_1_file_1_g5336"; +2L AUGUSTUS CDS 110406 110483 1 + 2 transcript_id "2L+_file_1_file_1_g5336.t1"; gene_id "2L+_file_1_file_1_g5336"; +2L AUGUSTUS CDS 110406 110483 1 + 2 transcript_id "2L+_file_1_file_1_g5336.t2"; gene_id "2L+_file_1_file_1_g5336"; +2L AUGUSTUS CDS 110406 110483 1 + 2 transcript_id "2L+_file_1_file_1_g5336.t3"; gene_id "2L+_file_1_file_1_g5336"; +2L AUGUSTUS exon 110406 110483 . + . transcript_id "2L+_file_1_file_1_g5336.t1"; gene_id "2L+_file_1_file_1_g5336"; +2L AUGUSTUS exon 110406 110483 . + . transcript_id "2L+_file_1_file_1_g5336.t2"; gene_id "2L+_file_1_file_1_g5336"; +2L AUGUSTUS exon 110406 110483 . + . transcript_id "2L+_file_1_file_1_g5336.t3"; gene_id "2L+_file_1_file_1_g5336"; +2L AUGUSTUS intron 110484 110754 1 + . transcript_id "2L+_file_1_file_1_g5336.t1"; gene_id "2L+_file_1_file_1_g5336"; +2L AUGUSTUS intron 110484 110754 1 + . transcript_id "2L+_file_1_file_1_g5336.t2"; gene_id "2L+_file_1_file_1_g5336"; +2L AUGUSTUS intron 110484 110754 1 + . transcript_id "2L+_file_1_file_1_g5336.t3"; gene_id "2L+_file_1_file_1_g5336"; +2L AUGUSTUS CDS 110755 110877 1 + 2 transcript_id "2L+_file_1_file_1_g5336.t1"; gene_id "2L+_file_1_file_1_g5336"; +2L AUGUSTUS CDS 110755 110877 1 + 2 transcript_id "2L+_file_1_file_1_g5336.t2"; gene_id "2L+_file_1_file_1_g5336"; +2L AUGUSTUS CDS 110755 110877 1 + 2 transcript_id "2L+_file_1_file_1_g5336.t3"; gene_id "2L+_file_1_file_1_g5336"; +2L AUGUSTUS exon 110755 110877 . + . transcript_id "2L+_file_1_file_1_g5336.t1"; gene_id "2L+_file_1_file_1_g5336"; +2L AUGUSTUS exon 110755 110877 . + . transcript_id "2L+_file_1_file_1_g5336.t2"; gene_id "2L+_file_1_file_1_g5336"; +2L AUGUSTUS exon 110755 110877 . + . transcript_id "2L+_file_1_file_1_g5336.t3"; gene_id "2L+_file_1_file_1_g5336"; +2L AUGUSTUS intron 110878 111004 1 + . transcript_id "2L+_file_1_file_1_g5336.t1"; gene_id "2L+_file_1_file_1_g5336"; +2L AUGUSTUS intron 110878 111004 1 + . transcript_id "2L+_file_1_file_1_g5336.t3"; gene_id "2L+_file_1_file_1_g5336"; +2L AUGUSTUS intron 110878 111906 1 + . transcript_id "2L+_file_1_file_1_g5336.t2"; gene_id "2L+_file_1_file_1_g5336"; +2L AUGUSTUS CDS 111005 111117 1 + 2 transcript_id "2L+_file_1_file_1_g5336.t1"; gene_id "2L+_file_1_file_1_g5336"; +2L AUGUSTUS exon 111005 111117 . + . transcript_id "2L+_file_1_file_1_g5336.t1"; gene_id "2L+_file_1_file_1_g5336"; +2L AUGUSTUS CDS 111005 111160 0.64 + 2 transcript_id "2L+_file_1_file_1_g5336.t3"; gene_id "2L+_file_1_file_1_g5336"; +2L AUGUSTUS exon 111005 111160 . + . transcript_id "2L+_file_1_file_1_g5336.t3"; gene_id "2L+_file_1_file_1_g5336"; +2L AUGUSTUS intron 111118 112689 1 + . transcript_id "2L+_file_1_file_1_g5336.t1"; gene_id "2L+_file_1_file_1_g5336"; +2L AUGUSTUS intron 111161 111906 0.64 + . transcript_id "2L+_file_1_file_1_g5336.t3"; gene_id "2L+_file_1_file_1_g5336"; +2L AUGUSTUS CDS 111907 112019 1 + 2 transcript_id "2L+_file_1_file_1_g5336.t2"; gene_id "2L+_file_1_file_1_g5336"; +2L AUGUSTUS CDS 111907 112019 1 + 2 transcript_id "2L+_file_1_file_1_g5336.t3"; gene_id "2L+_file_1_file_1_g5336"; +2L AUGUSTUS exon 111907 112019 . + . transcript_id "2L+_file_1_file_1_g5336.t2"; gene_id "2L+_file_1_file_1_g5336"; +2L AUGUSTUS exon 111907 112019 . + . transcript_id "2L+_file_1_file_1_g5336.t3"; gene_id "2L+_file_1_file_1_g5336"; +2L AUGUSTUS intron 112020 112689 1 + . transcript_id "2L+_file_1_file_1_g5336.t2"; gene_id "2L+_file_1_file_1_g5336"; +2L AUGUSTUS intron 112020 112689 1 + . transcript_id "2L+_file_1_file_1_g5336.t3"; gene_id "2L+_file_1_file_1_g5336"; +2L AUGUSTUS CDS 112690 113369 1 + 0 transcript_id "2L+_file_1_file_1_g5336.t1"; gene_id "2L+_file_1_file_1_g5336"; +2L AUGUSTUS CDS 112690 113369 1 + 0 transcript_id "2L+_file_1_file_1_g5336.t2"; gene_id "2L+_file_1_file_1_g5336"; +2L AUGUSTUS CDS 112690 113369 1 + 0 transcript_id "2L+_file_1_file_1_g5336.t3"; gene_id "2L+_file_1_file_1_g5336"; +2L AUGUSTUS exon 112690 113369 . + . transcript_id "2L+_file_1_file_1_g5336.t1"; gene_id "2L+_file_1_file_1_g5336"; +2L AUGUSTUS exon 112690 113369 . + . transcript_id "2L+_file_1_file_1_g5336.t2"; gene_id "2L+_file_1_file_1_g5336"; +2L AUGUSTUS exon 112690 113369 . + . transcript_id "2L+_file_1_file_1_g5336.t3"; gene_id "2L+_file_1_file_1_g5336"; +2L GeneMark.hmm start_codon 112696 112698 . + 0 gene_id "2L+_file_1_file_2_2600_g"; transcript_id "2L+_file_1_file_2_2600_t"; count "file_1_file_2_1_1"; +2L GeneMark.hmm CDS 112696 113369 . + 0 gene_id "2L+_file_1_file_2_2600_g"; transcript_id "2L+_file_1_file_2_2600_t"; cds_type "file_1_file_2_Initial"; count "file_1_file_2_1_2"; anchored "file_1_file_2_0_1"; +2L GeneMark.hmm exon 112696 113369 0 + . gene_id "2L+_file_1_file_2_2600_g"; transcript_id "2L+_file_1_file_2_2600_t"; cds_type "file_1_file_2_Initial"; count "file_1_file_2_1_2"; anchored "file_1_file_2_0_1"; +2L AUGUSTUS intron 113370 113433 1 + . transcript_id "2L+_file_1_file_1_g5336.t1"; gene_id "2L+_file_1_file_1_g5336"; +2L AUGUSTUS intron 113370 113433 1 + . transcript_id "2L+_file_1_file_1_g5336.t2"; gene_id "2L+_file_1_file_1_g5336"; +2L AUGUSTUS intron 113370 113433 1 + . transcript_id "2L+_file_1_file_1_g5336.t3"; gene_id "2L+_file_1_file_1_g5336"; +2L AUGUSTUS CDS 113434 113542 1 + 1 transcript_id "2L+_file_1_file_1_g5336.t1"; gene_id "2L+_file_1_file_1_g5336"; +2L AUGUSTUS CDS 113434 113542 1 + 1 transcript_id "2L+_file_1_file_1_g5336.t2"; gene_id "2L+_file_1_file_1_g5336"; +2L AUGUSTUS CDS 113434 113542 1 + 1 transcript_id "2L+_file_1_file_1_g5336.t3"; gene_id "2L+_file_1_file_1_g5336"; +2L AUGUSTUS exon 113434 113542 . + . transcript_id "2L+_file_1_file_1_g5336.t1"; gene_id "2L+_file_1_file_1_g5336"; +2L AUGUSTUS exon 113434 113542 . + . transcript_id "2L+_file_1_file_1_g5336.t2"; gene_id "2L+_file_1_file_1_g5336"; +2L AUGUSTUS exon 113434 113542 . + . transcript_id "2L+_file_1_file_1_g5336.t3"; gene_id "2L+_file_1_file_1_g5336"; +2L GeneMark.hmm CDS 113434 113542 . + 1 gene_id "2L+_file_1_file_2_2600_g"; transcript_id "2L+_file_1_file_2_2600_t"; cds_type "file_1_file_2_Terminal"; count "file_1_file_2_2_2"; anchored "file_1_file_2_1_0"; +2L GeneMark.hmm exon 113434 113542 0 + . gene_id "2L+_file_1_file_2_2600_g"; transcript_id "2L+_file_1_file_2_2600_t"; cds_type "file_1_file_2_Terminal"; count "file_1_file_2_2_2"; anchored "file_1_file_2_1_0"; +2L AUGUSTUS stop_codon 113540 113542 . + 0 transcript_id "2L+_file_1_file_1_g5336.t1"; gene_id "2L+_file_1_file_1_g5336"; +2L AUGUSTUS stop_codon 113540 113542 . + 0 transcript_id "2L+_file_1_file_1_g5336.t2"; gene_id "2L+_file_1_file_1_g5336"; +2L AUGUSTUS stop_codon 113540 113542 . + 0 transcript_id "2L+_file_1_file_1_g5336.t3"; gene_id "2L+_file_1_file_1_g5336"; +2L GeneMark.hmm stop_codon 113540 113542 . + 0 gene_id "2L+_file_1_file_2_2600_g"; transcript_id "2L+_file_1_file_2_2600_t"; count "file_1_file_2_1_1"; +2L AUGUSTUS stop_codon 115713 115715 . - 0 transcript_id "2L-_file_1_file_1_g5337.t1"; gene_id "2L-_file_1_file_1_g5337"; +2L AUGUSTUS CDS 115713 116095 0.76 - 2 transcript_id "2L-_file_1_file_1_g5337.t1"; gene_id "2L-_file_1_file_1_g5337"; +2L AUGUSTUS exon 115713 116095 . - . transcript_id "2L-_file_1_file_1_g5337.t1"; gene_id "2L-_file_1_file_1_g5337"; +2L AUGUSTUS intron 116096 117626 0.76 - . transcript_id "2L-_file_1_file_1_g5337.t1"; gene_id "2L-_file_1_file_1_g5337"; +2L AUGUSTUS CDS 117627 117759 0.98 - 0 transcript_id "2L-_file_1_file_1_g5337.t1"; gene_id "2L-_file_1_file_1_g5337"; +2L AUGUSTUS exon 117627 117759 . - . transcript_id "2L-_file_1_file_1_g5337.t1"; gene_id "2L-_file_1_file_1_g5337"; +2L AUGUSTUS intron 117760 117819 1 - . transcript_id "2L-_file_1_file_1_g5337.t1"; gene_id "2L-_file_1_file_1_g5337"; +2L AUGUSTUS CDS 117820 118076 1 - 2 transcript_id "2L-_file_1_file_1_g5337.t1"; gene_id "2L-_file_1_file_1_g5337"; +2L AUGUSTUS exon 117820 118076 . - . transcript_id "2L-_file_1_file_1_g5337.t1"; gene_id "2L-_file_1_file_1_g5337"; +2L AUGUSTUS intron 118077 118135 1 - . transcript_id "2L-_file_1_file_1_g5337.t1"; gene_id "2L-_file_1_file_1_g5337"; +2L AUGUSTUS CDS 118136 118304 1 - 0 transcript_id "2L-_file_1_file_1_g5337.t1"; gene_id "2L-_file_1_file_1_g5337"; +2L AUGUSTUS exon 118136 118304 . - . transcript_id "2L-_file_1_file_1_g5337.t1"; gene_id "2L-_file_1_file_1_g5337"; +2L AUGUSTUS intron 118305 118360 1 - . transcript_id "2L-_file_1_file_1_g5337.t1"; gene_id "2L-_file_1_file_1_g5337"; +2L AUGUSTUS CDS 118361 118874 1 - 1 transcript_id "2L-_file_1_file_1_g5337.t1"; gene_id "2L-_file_1_file_1_g5337"; +2L AUGUSTUS exon 118361 118874 . - . transcript_id "2L-_file_1_file_1_g5337.t1"; gene_id "2L-_file_1_file_1_g5337"; +2L AUGUSTUS intron 118875 118930 1 - . transcript_id "2L-_file_1_file_1_g5337.t1"; gene_id "2L-_file_1_file_1_g5337"; +2L AUGUSTUS CDS 118931 119076 1 - 0 transcript_id "2L-_file_1_file_1_g5337.t1"; gene_id "2L-_file_1_file_1_g5337"; +2L AUGUSTUS exon 118931 119076 . - . transcript_id "2L-_file_1_file_1_g5337.t1"; gene_id "2L-_file_1_file_1_g5337"; +2L AUGUSTUS intron 119077 119133 1 - . transcript_id "2L-_file_1_file_1_g5337.t1"; gene_id "2L-_file_1_file_1_g5337"; +2L AUGUSTUS CDS 119134 119235 1 - 0 transcript_id "2L-_file_1_file_1_g5337.t1"; gene_id "2L-_file_1_file_1_g5337"; +2L AUGUSTUS exon 119134 119235 . - . transcript_id "2L-_file_1_file_1_g5337.t1"; gene_id "2L-_file_1_file_1_g5337"; +2L AUGUSTUS intron 119236 119287 1 - . transcript_id "2L-_file_1_file_1_g5337.t1"; gene_id "2L-_file_1_file_1_g5337"; +2L AUGUSTUS CDS 119288 119375 1 - 1 transcript_id "2L-_file_1_file_1_g5337.t1"; gene_id "2L-_file_1_file_1_g5337"; +2L AUGUSTUS exon 119288 119375 . - . transcript_id "2L-_file_1_file_1_g5337.t1"; gene_id "2L-_file_1_file_1_g5337"; +2L AUGUSTUS intron 119376 119430 1 - . transcript_id "2L-_file_1_file_1_g5337.t1"; gene_id "2L-_file_1_file_1_g5337"; +2L AUGUSTUS CDS 119431 119554 1 - 2 transcript_id "2L-_file_1_file_1_g5337.t1"; gene_id "2L-_file_1_file_1_g5337"; +2L AUGUSTUS exon 119431 119554 . - . transcript_id "2L-_file_1_file_1_g5337.t1"; gene_id "2L-_file_1_file_1_g5337"; +2L AUGUSTUS intron 119555 119827 1 - . transcript_id "2L-_file_1_file_1_g5337.t1"; gene_id "2L-_file_1_file_1_g5337"; +2L AUGUSTUS CDS 119828 120032 1 - 0 transcript_id "2L-_file_1_file_1_g5337.t1"; gene_id "2L-_file_1_file_1_g5337"; +2L AUGUSTUS exon 119828 120032 . - . transcript_id "2L-_file_1_file_1_g5337.t1"; gene_id "2L-_file_1_file_1_g5337"; +2L AUGUSTUS start_codon 120030 120032 . - 0 transcript_id "2L-_file_1_file_1_g5337.t1"; gene_id "2L-_file_1_file_1_g5337"; +2L AUGUSTUS stop_codon 122988 122990 . - 0 transcript_id "2L-_file_1_file_1_g5338.t1"; gene_id "2L-_file_1_file_1_g5338"; +2L AUGUSTUS CDS 122988 122994 1 - 1 transcript_id "2L-_file_1_file_1_g5338.t1"; gene_id "2L-_file_1_file_1_g5338"; +2L AUGUSTUS exon 122988 122994 . - . transcript_id "2L-_file_1_file_1_g5338.t1"; gene_id "2L-_file_1_file_1_g5338"; +2L AUGUSTUS intron 122995 123080 1 - . transcript_id "2L-_file_1_file_1_g5338.t1"; gene_id "2L-_file_1_file_1_g5338"; +2L AUGUSTUS CDS 123081 123088 1 - 0 transcript_id "2L-_file_1_file_1_g5338.t1"; gene_id "2L-_file_1_file_1_g5338"; +2L AUGUSTUS exon 123081 123088 . - . transcript_id "2L-_file_1_file_1_g5338.t1"; gene_id "2L-_file_1_file_1_g5338"; +2L AUGUSTUS intron 123089 123137 1 - . transcript_id "2L-_file_1_file_1_g5338.t1"; gene_id "2L-_file_1_file_1_g5338"; +2L AUGUSTUS CDS 123138 123629 1 - 0 transcript_id "2L-_file_1_file_1_g5338.t1"; gene_id "2L-_file_1_file_1_g5338"; +2L AUGUSTUS exon 123138 123629 . - . transcript_id "2L-_file_1_file_1_g5338.t1"; gene_id "2L-_file_1_file_1_g5338"; +2L AUGUSTUS intron 123630 123693 1 - . transcript_id "2L-_file_1_file_1_g5338.t1"; gene_id "2L-_file_1_file_1_g5338"; +2L AUGUSTUS CDS 123694 123794 1 - 2 transcript_id "2L-_file_1_file_1_g5338.t1"; gene_id "2L-_file_1_file_1_g5338"; +2L AUGUSTUS exon 123694 123794 . - . transcript_id "2L-_file_1_file_1_g5338.t1"; gene_id "2L-_file_1_file_1_g5338"; +2L AUGUSTUS intron 123795 123855 1 - . transcript_id "2L-_file_1_file_1_g5338.t1"; gene_id "2L-_file_1_file_1_g5338"; +2L AUGUSTUS CDS 123856 124024 1 - 0 transcript_id "2L-_file_1_file_1_g5338.t1"; gene_id "2L-_file_1_file_1_g5338"; +2L AUGUSTUS exon 123856 124024 . - . transcript_id "2L-_file_1_file_1_g5338.t1"; gene_id "2L-_file_1_file_1_g5338"; +2L AUGUSTUS intron 124025 124086 1 - . transcript_id "2L-_file_1_file_1_g5338.t1"; gene_id "2L-_file_1_file_1_g5338"; +2L AUGUSTUS CDS 124087 124920 1 - 0 transcript_id "2L-_file_1_file_1_g5338.t1"; gene_id "2L-_file_1_file_1_g5338"; +2L AUGUSTUS exon 124087 124920 . - . transcript_id "2L-_file_1_file_1_g5338.t1"; gene_id "2L-_file_1_file_1_g5338"; +2L AUGUSTUS intron 124921 125076 1 - . transcript_id "2L-_file_1_file_1_g5338.t1"; gene_id "2L-_file_1_file_1_g5338"; +2L AUGUSTUS CDS 125077 125266 1 - 1 transcript_id "2L-_file_1_file_1_g5338.t1"; gene_id "2L-_file_1_file_1_g5338"; +2L AUGUSTUS exon 125077 125266 . - . transcript_id "2L-_file_1_file_1_g5338.t1"; gene_id "2L-_file_1_file_1_g5338"; +2L AUGUSTUS intron 125267 126109 1 - . transcript_id "2L-_file_1_file_1_g5338.t1"; gene_id "2L-_file_1_file_1_g5338"; +2L AUGUSTUS CDS 126110 126227 1 - 2 transcript_id "2L-_file_1_file_1_g5338.t1"; gene_id "2L-_file_1_file_1_g5338"; +2L AUGUSTUS exon 126110 126227 . - . transcript_id "2L-_file_1_file_1_g5338.t1"; gene_id "2L-_file_1_file_1_g5338"; +2L AUGUSTUS intron 126228 128799 1 - . transcript_id "2L-_file_1_file_1_g5338.t1"; gene_id "2L-_file_1_file_1_g5338"; +2L AUGUSTUS CDS 128800 128983 0.92 - 0 transcript_id "2L-_file_1_file_1_g5338.t1"; gene_id "2L-_file_1_file_1_g5338"; +2L AUGUSTUS exon 128800 128983 . - . transcript_id "2L-_file_1_file_1_g5338.t1"; gene_id "2L-_file_1_file_1_g5338"; +2L AUGUSTUS start_codon 128981 128983 . - 0 transcript_id "2L-_file_1_file_1_g5338.t1"; gene_id "2L-_file_1_file_1_g5338"; +2L AUGUSTUS stop_codon 138695 138697 . - 0 transcript_id "2L-_file_1_file_1_g5339.t1"; gene_id "2L-_file_1_file_1_g5339"; +2L AUGUSTUS CDS 138695 139198 1 - 0 transcript_id "2L-_file_1_file_1_g5339.t1"; gene_id "2L-_file_1_file_1_g5339"; +2L AUGUSTUS exon 138695 139198 . - . transcript_id "2L-_file_1_file_1_g5339.t1"; gene_id "2L-_file_1_file_1_g5339"; +2L AUGUSTUS intron 139199 139255 1 - . transcript_id "2L-_file_1_file_1_g5339.t1"; gene_id "2L-_file_1_file_1_g5339"; +2L AUGUSTUS CDS 139256 139336 1 - 0 transcript_id "2L-_file_1_file_1_g5339.t1"; gene_id "2L-_file_1_file_1_g5339"; +2L AUGUSTUS exon 139256 139336 . - . transcript_id "2L-_file_1_file_1_g5339.t1"; gene_id "2L-_file_1_file_1_g5339"; +2L AUGUSTUS start_codon 139334 139336 . - 0 transcript_id "2L-_file_1_file_1_g5339.t1"; gene_id "2L-_file_1_file_1_g5339"; +2L AUGUSTUS stop_codon 139471 139473 . - 0 transcript_id "2L-_file_1_file_1_g5340.t1"; gene_id "2L-_file_1_file_1_g5340"; +2L AUGUSTUS CDS 139471 139687 1 - 1 transcript_id "2L-_file_1_file_1_g5340.t1"; gene_id "2L-_file_1_file_1_g5340"; +2L AUGUSTUS exon 139471 139687 . - . transcript_id "2L-_file_1_file_1_g5340.t1"; gene_id "2L-_file_1_file_1_g5340"; +2L AUGUSTUS intron 139688 139740 1 - . transcript_id "2L-_file_1_file_1_g5340.t1"; gene_id "2L-_file_1_file_1_g5340"; +2L AUGUSTUS CDS 139741 139954 1 - 2 transcript_id "2L-_file_1_file_1_g5340.t1"; gene_id "2L-_file_1_file_1_g5340"; +2L AUGUSTUS exon 139741 139954 . - . transcript_id "2L-_file_1_file_1_g5340.t1"; gene_id "2L-_file_1_file_1_g5340"; +2L AUGUSTUS intron 139955 140113 1 - . transcript_id "2L-_file_1_file_1_g5340.t1"; gene_id "2L-_file_1_file_1_g5340"; +2L AUGUSTUS CDS 140114 140990 0.27 - 0 transcript_id "2L-_file_1_file_1_g5340.t1"; gene_id "2L-_file_1_file_1_g5340"; +2L AUGUSTUS exon 140114 140990 . - . transcript_id "2L-_file_1_file_1_g5340.t1"; gene_id "2L-_file_1_file_1_g5340"; +2L AUGUSTUS intron 140991 141276 0.16 - . transcript_id "2L-_file_1_file_1_g5340.t1"; gene_id "2L-_file_1_file_1_g5340"; +2L AUGUSTUS CDS 141277 141340 0.42 - 1 transcript_id "2L-_file_1_file_1_g5340.t1"; gene_id "2L-_file_1_file_1_g5340"; +2L AUGUSTUS exon 141277 141340 . - . transcript_id "2L-_file_1_file_1_g5340.t1"; gene_id "2L-_file_1_file_1_g5340"; +2L AUGUSTUS intron 141341 141395 1 - . transcript_id "2L-_file_1_file_1_g5340.t1"; gene_id "2L-_file_1_file_1_g5340"; +2L AUGUSTUS CDS 141396 141609 1 - 2 transcript_id "2L-_file_1_file_1_g5340.t1"; gene_id "2L-_file_1_file_1_g5340"; +2L AUGUSTUS exon 141396 141609 . - . transcript_id "2L-_file_1_file_1_g5340.t1"; gene_id "2L-_file_1_file_1_g5340"; +2L AUGUSTUS intron 141610 141670 1 - . transcript_id "2L-_file_1_file_1_g5340.t1"; gene_id "2L-_file_1_file_1_g5340"; +2L AUGUSTUS CDS 141671 142487 1 - 0 transcript_id "2L-_file_1_file_1_g5340.t1"; gene_id "2L-_file_1_file_1_g5340"; +2L AUGUSTUS exon 141671 142487 . - . transcript_id "2L-_file_1_file_1_g5340.t1"; gene_id "2L-_file_1_file_1_g5340"; +2L AUGUSTUS start_codon 142485 142487 . - 0 transcript_id "2L-_file_1_file_1_g5340.t1"; gene_id "2L-_file_1_file_1_g5340"; +2L AUGUSTUS start_codon 143426 143428 . + 0 transcript_id "2L+_file_1_file_1_g5341.t1"; gene_id "2L+_file_1_file_1_g5341"; +2L AUGUSTUS start_codon 143426 143428 . + 0 transcript_id "2L+_file_1_file_1_g5341.t2"; gene_id "2L+_file_1_file_1_g5341"; +2L AUGUSTUS CDS 143426 143715 0.7 + 0 transcript_id "2L+_file_1_file_1_g5341.t2"; gene_id "2L+_file_1_file_1_g5341"; +2L AUGUSTUS exon 143426 143715 . + . transcript_id "2L+_file_1_file_1_g5341.t2"; gene_id "2L+_file_1_file_1_g5341"; +2L AUGUSTUS CDS 143426 144094 0.71 + 0 transcript_id "2L+_file_1_file_1_g5341.t1"; gene_id "2L+_file_1_file_1_g5341"; +2L AUGUSTUS exon 143426 144094 . + . transcript_id "2L+_file_1_file_1_g5341.t1"; gene_id "2L+_file_1_file_1_g5341"; +2L AUGUSTUS intron 143716 143770 0.52 + . transcript_id "2L+_file_1_file_1_g5341.t2"; gene_id "2L+_file_1_file_1_g5341"; +2L AUGUSTUS CDS 143771 143867 0.52 + 1 transcript_id "2L+_file_1_file_1_g5341.t2"; gene_id "2L+_file_1_file_1_g5341"; +2L AUGUSTUS exon 143771 143867 . + . transcript_id "2L+_file_1_file_1_g5341.t2"; gene_id "2L+_file_1_file_1_g5341"; +2L AUGUSTUS stop_codon 143865 143867 . + 0 transcript_id "2L+_file_1_file_1_g5341.t2"; gene_id "2L+_file_1_file_1_g5341"; +2L AUGUSTUS stop_codon 144092 144094 . + 0 transcript_id "2L+_file_1_file_1_g5341.t1"; gene_id "2L+_file_1_file_1_g5341"; +2L AUGUSTUS stop_codon 144374 144376 . - 0 transcript_id "2L-_file_1_file_1_g5342.t1"; gene_id "2L-_file_1_file_1_g5342"; +2L AUGUSTUS stop_codon 144374 144376 . - 0 transcript_id "2L-_file_1_file_1_g5342.t2"; gene_id "2L-_file_1_file_1_g5342"; +2L AUGUSTUS CDS 144374 145910 0.93 - 1 transcript_id "2L-_file_1_file_1_g5342.t1"; gene_id "2L-_file_1_file_1_g5342"; +2L AUGUSTUS CDS 144374 145910 0.93 - 1 transcript_id "2L-_file_1_file_1_g5342.t2"; gene_id "2L-_file_1_file_1_g5342"; +2L AUGUSTUS exon 144374 145910 . - . transcript_id "2L-_file_1_file_1_g5342.t1"; gene_id "2L-_file_1_file_1_g5342"; +2L AUGUSTUS exon 144374 145910 . - . transcript_id "2L-_file_1_file_1_g5342.t2"; gene_id "2L-_file_1_file_1_g5342"; +2L AUGUSTUS intron 145911 145974 1 - . transcript_id "2L-_file_1_file_1_g5342.t2"; gene_id "2L-_file_1_file_1_g5342"; +2L AUGUSTUS intron 145911 147348 1 - . transcript_id "2L-_file_1_file_1_g5342.t1"; gene_id "2L-_file_1_file_1_g5342"; +2L AUGUSTUS CDS 145975 146202 0.99 - 1 transcript_id "2L-_file_1_file_1_g5342.t2"; gene_id "2L-_file_1_file_1_g5342"; +2L AUGUSTUS exon 145975 146202 . - . transcript_id "2L-_file_1_file_1_g5342.t2"; gene_id "2L-_file_1_file_1_g5342"; +2L AUGUSTUS intron 146203 147348 0.83 - . transcript_id "2L-_file_1_file_1_g5342.t2"; gene_id "2L-_file_1_file_1_g5342"; +2L AUGUSTUS CDS 147349 147454 0.84 - 2 transcript_id "2L-_file_1_file_1_g5342.t2"; gene_id "2L-_file_1_file_1_g5342"; +2L AUGUSTUS CDS 147349 147454 1 - 2 transcript_id "2L-_file_1_file_1_g5342.t1"; gene_id "2L-_file_1_file_1_g5342"; +2L AUGUSTUS exon 147349 147454 . - . transcript_id "2L-_file_1_file_1_g5342.t1"; gene_id "2L-_file_1_file_1_g5342"; +2L AUGUSTUS exon 147349 147454 . - . transcript_id "2L-_file_1_file_1_g5342.t2"; gene_id "2L-_file_1_file_1_g5342"; +2L AUGUSTUS intron 147455 147510 1 - . transcript_id "2L-_file_1_file_1_g5342.t1"; gene_id "2L-_file_1_file_1_g5342"; +2L AUGUSTUS intron 147455 147510 1 - . transcript_id "2L-_file_1_file_1_g5342.t2"; gene_id "2L-_file_1_file_1_g5342"; +2L AUGUSTUS CDS 147511 147710 1 - 1 transcript_id "2L-_file_1_file_1_g5342.t1"; gene_id "2L-_file_1_file_1_g5342"; +2L AUGUSTUS CDS 147511 147710 1 - 1 transcript_id "2L-_file_1_file_1_g5342.t2"; gene_id "2L-_file_1_file_1_g5342"; +2L AUGUSTUS exon 147511 147710 . - . transcript_id "2L-_file_1_file_1_g5342.t1"; gene_id "2L-_file_1_file_1_g5342"; +2L AUGUSTUS exon 147511 147710 . - . transcript_id "2L-_file_1_file_1_g5342.t2"; gene_id "2L-_file_1_file_1_g5342"; +2L AUGUSTUS intron 147711 147764 1 - . transcript_id "2L-_file_1_file_1_g5342.t1"; gene_id "2L-_file_1_file_1_g5342"; +2L AUGUSTUS intron 147711 147764 1 - . transcript_id "2L-_file_1_file_1_g5342.t2"; gene_id "2L-_file_1_file_1_g5342"; +2L AUGUSTUS CDS 147765 147936 1 - 2 transcript_id "2L-_file_1_file_1_g5342.t1"; gene_id "2L-_file_1_file_1_g5342"; +2L AUGUSTUS CDS 147765 147936 1 - 2 transcript_id "2L-_file_1_file_1_g5342.t2"; gene_id "2L-_file_1_file_1_g5342"; +2L AUGUSTUS exon 147765 147936 . - . transcript_id "2L-_file_1_file_1_g5342.t1"; gene_id "2L-_file_1_file_1_g5342"; +2L AUGUSTUS exon 147765 147936 . - . transcript_id "2L-_file_1_file_1_g5342.t2"; gene_id "2L-_file_1_file_1_g5342"; +2L AUGUSTUS intron 147937 147994 1 - . transcript_id "2L-_file_1_file_1_g5342.t1"; gene_id "2L-_file_1_file_1_g5342"; +2L AUGUSTUS intron 147937 147994 1 - . transcript_id "2L-_file_1_file_1_g5342.t2"; gene_id "2L-_file_1_file_1_g5342"; +2L AUGUSTUS CDS 147995 148037 1 - 0 transcript_id "2L-_file_1_file_1_g5342.t1"; gene_id "2L-_file_1_file_1_g5342"; +2L AUGUSTUS CDS 147995 148037 1 - 0 transcript_id "2L-_file_1_file_1_g5342.t2"; gene_id "2L-_file_1_file_1_g5342"; +2L AUGUSTUS exon 147995 148037 . - . transcript_id "2L-_file_1_file_1_g5342.t1"; gene_id "2L-_file_1_file_1_g5342"; +2L AUGUSTUS exon 147995 148037 . - . transcript_id "2L-_file_1_file_1_g5342.t2"; gene_id "2L-_file_1_file_1_g5342"; +2L AUGUSTUS intron 148038 148091 1 - . transcript_id "2L-_file_1_file_1_g5342.t1"; gene_id "2L-_file_1_file_1_g5342"; +2L AUGUSTUS intron 148038 148091 1 - . transcript_id "2L-_file_1_file_1_g5342.t2"; gene_id "2L-_file_1_file_1_g5342"; +2L AUGUSTUS CDS 148092 148173 1 - 1 transcript_id "2L-_file_1_file_1_g5342.t1"; gene_id "2L-_file_1_file_1_g5342"; +2L AUGUSTUS CDS 148092 148173 1 - 1 transcript_id "2L-_file_1_file_1_g5342.t2"; gene_id "2L-_file_1_file_1_g5342"; +2L AUGUSTUS exon 148092 148173 . - . transcript_id "2L-_file_1_file_1_g5342.t1"; gene_id "2L-_file_1_file_1_g5342"; +2L AUGUSTUS exon 148092 148173 . - . transcript_id "2L-_file_1_file_1_g5342.t2"; gene_id "2L-_file_1_file_1_g5342"; +2L AUGUSTUS intron 148174 148337 1 - . transcript_id "2L-_file_1_file_1_g5342.t1"; gene_id "2L-_file_1_file_1_g5342"; +2L AUGUSTUS intron 148174 148337 1 - . transcript_id "2L-_file_1_file_1_g5342.t2"; gene_id "2L-_file_1_file_1_g5342"; +2L AUGUSTUS CDS 148338 148825 1 - 0 transcript_id "2L-_file_1_file_1_g5342.t1"; gene_id "2L-_file_1_file_1_g5342"; +2L AUGUSTUS CDS 148338 148825 1 - 0 transcript_id "2L-_file_1_file_1_g5342.t2"; gene_id "2L-_file_1_file_1_g5342"; +2L AUGUSTUS exon 148338 148825 . - . transcript_id "2L-_file_1_file_1_g5342.t1"; gene_id "2L-_file_1_file_1_g5342"; +2L AUGUSTUS exon 148338 148825 . - . transcript_id "2L-_file_1_file_1_g5342.t2"; gene_id "2L-_file_1_file_1_g5342"; +2L AUGUSTUS intron 148826 148878 1 - . transcript_id "2L-_file_1_file_1_g5342.t1"; gene_id "2L-_file_1_file_1_g5342"; +2L AUGUSTUS intron 148826 148878 1 - . transcript_id "2L-_file_1_file_1_g5342.t2"; gene_id "2L-_file_1_file_1_g5342"; +2L AUGUSTUS CDS 148879 149226 1 - 0 transcript_id "2L-_file_1_file_1_g5342.t1"; gene_id "2L-_file_1_file_1_g5342"; +2L AUGUSTUS CDS 148879 149226 1 - 0 transcript_id "2L-_file_1_file_1_g5342.t2"; gene_id "2L-_file_1_file_1_g5342"; +2L AUGUSTUS exon 148879 149226 . - . transcript_id "2L-_file_1_file_1_g5342.t1"; gene_id "2L-_file_1_file_1_g5342"; +2L AUGUSTUS exon 148879 149226 . - . transcript_id "2L-_file_1_file_1_g5342.t2"; gene_id "2L-_file_1_file_1_g5342"; +2L AUGUSTUS intron 149227 151114 1 - . transcript_id "2L-_file_1_file_1_g5342.t1"; gene_id "2L-_file_1_file_1_g5342"; +2L AUGUSTUS intron 149227 151114 1 - . transcript_id "2L-_file_1_file_1_g5342.t2"; gene_id "2L-_file_1_file_1_g5342"; +2L AUGUSTUS CDS 151115 153106 0.51 - 0 transcript_id "2L-_file_1_file_1_g5342.t2"; gene_id "2L-_file_1_file_1_g5342"; +2L AUGUSTUS CDS 151115 153106 0.54 - 0 transcript_id "2L-_file_1_file_1_g5342.t1"; gene_id "2L-_file_1_file_1_g5342"; +2L AUGUSTUS exon 151115 153106 . - . transcript_id "2L-_file_1_file_1_g5342.t1"; gene_id "2L-_file_1_file_1_g5342"; +2L AUGUSTUS exon 151115 153106 . - . transcript_id "2L-_file_1_file_1_g5342.t2"; gene_id "2L-_file_1_file_1_g5342"; +2L AUGUSTUS start_codon 153104 153106 . - 0 transcript_id "2L-_file_1_file_1_g5342.t1"; gene_id "2L-_file_1_file_1_g5342"; +2L AUGUSTUS start_codon 153104 153106 . - 0 transcript_id "2L-_file_1_file_1_g5342.t2"; gene_id "2L-_file_1_file_1_g5342"; +2L AUGUSTUS stop_codon 153677 153679 . - 0 transcript_id "2L-_file_1_file_1_g5343.t1"; gene_id "2L-_file_1_file_1_g5343"; +2L AUGUSTUS CDS 153677 155059 0.46 - 0 transcript_id "2L-_file_1_file_1_g5343.t1"; gene_id "2L-_file_1_file_1_g5343"; +2L AUGUSTUS exon 153677 155059 . - . transcript_id "2L-_file_1_file_1_g5343.t1"; gene_id "2L-_file_1_file_1_g5343"; +2L AUGUSTUS intron 155060 155127 1 - . transcript_id "2L-_file_1_file_1_g5343.t1"; gene_id "2L-_file_1_file_1_g5343"; +2L AUGUSTUS CDS 155128 155247 1 - 0 transcript_id "2L-_file_1_file_1_g5343.t1"; gene_id "2L-_file_1_file_1_g5343"; +2L AUGUSTUS exon 155128 155247 . - . transcript_id "2L-_file_1_file_1_g5343.t1"; gene_id "2L-_file_1_file_1_g5343"; +2L AUGUSTUS start_codon 155245 155247 . - 0 transcript_id "2L-_file_1_file_1_g5343.t1"; gene_id "2L-_file_1_file_1_g5343"; +2L AUGUSTUS start_codon 155572 155574 . + 0 transcript_id "2L+_file_1_file_1_g5344.t1"; gene_id "2L+_file_1_file_1_g5344"; +2L AUGUSTUS CDS 155572 155784 1 + 0 transcript_id "2L+_file_1_file_1_g5344.t1"; gene_id "2L+_file_1_file_1_g5344"; +2L AUGUSTUS exon 155572 155784 . + . transcript_id "2L+_file_1_file_1_g5344.t1"; gene_id "2L+_file_1_file_1_g5344"; +2L AUGUSTUS intron 155785 155857 1 + . transcript_id "2L+_file_1_file_1_g5344.t1"; gene_id "2L+_file_1_file_1_g5344"; +2L AUGUSTUS CDS 155858 155950 0.99 + 0 transcript_id "2L+_file_1_file_1_g5344.t1"; gene_id "2L+_file_1_file_1_g5344"; +2L AUGUSTUS exon 155858 155950 . + . transcript_id "2L+_file_1_file_1_g5344.t1"; gene_id "2L+_file_1_file_1_g5344"; +2L AUGUSTUS stop_codon 155948 155950 . + 0 transcript_id "2L+_file_1_file_1_g5344.t1"; gene_id "2L+_file_1_file_1_g5344"; +2L AUGUSTUS start_codon 156241 156243 . + 0 transcript_id "2L+_file_1_file_1_g5345.t1"; gene_id "2L+_file_1_file_1_g5345"; +2L AUGUSTUS CDS 156241 156348 0.97 + 0 transcript_id "2L+_file_1_file_1_g5345.t1"; gene_id "2L+_file_1_file_1_g5345"; +2L AUGUSTUS exon 156241 156348 . + . transcript_id "2L+_file_1_file_1_g5345.t1"; gene_id "2L+_file_1_file_1_g5345"; +2L AUGUSTUS intron 156349 156422 1 + . transcript_id "2L+_file_1_file_1_g5345.t1"; gene_id "2L+_file_1_file_1_g5345"; +2L AUGUSTUS CDS 156423 156552 1 + 0 transcript_id "2L+_file_1_file_1_g5345.t1"; gene_id "2L+_file_1_file_1_g5345"; +2L AUGUSTUS exon 156423 156552 . + . transcript_id "2L+_file_1_file_1_g5345.t1"; gene_id "2L+_file_1_file_1_g5345"; +2L AUGUSTUS intron 156553 156735 1 + . transcript_id "2L+_file_1_file_1_g5345.t1"; gene_id "2L+_file_1_file_1_g5345"; +2L AUGUSTUS CDS 156736 157541 1 + 2 transcript_id "2L+_file_1_file_1_g5345.t1"; gene_id "2L+_file_1_file_1_g5345"; +2L AUGUSTUS exon 156736 157541 . + . transcript_id "2L+_file_1_file_1_g5345.t1"; gene_id "2L+_file_1_file_1_g5345"; +2L AUGUSTUS stop_codon 157539 157541 . + 0 transcript_id "2L+_file_1_file_1_g5345.t1"; gene_id "2L+_file_1_file_1_g5345"; +2L AUGUSTUS stop_codon 157944 157946 . - 0 transcript_id "2L-_file_1_file_1_g5346.t1"; gene_id "2L-_file_1_file_1_g5346"; +2L AUGUSTUS CDS 157944 158375 1 - 0 transcript_id "2L-_file_1_file_1_g5346.t1"; gene_id "2L-_file_1_file_1_g5346"; +2L AUGUSTUS exon 157944 158375 . - . transcript_id "2L-_file_1_file_1_g5346.t1"; gene_id "2L-_file_1_file_1_g5346"; +2L AUGUSTUS intron 158376 158435 1 - . transcript_id "2L-_file_1_file_1_g5346.t1"; gene_id "2L-_file_1_file_1_g5346"; +2L AUGUSTUS CDS 158436 158603 1 - 0 transcript_id "2L-_file_1_file_1_g5346.t1"; gene_id "2L-_file_1_file_1_g5346"; +2L AUGUSTUS exon 158436 158603 . - . transcript_id "2L-_file_1_file_1_g5346.t1"; gene_id "2L-_file_1_file_1_g5346"; +2L AUGUSTUS start_codon 158601 158603 . - 0 transcript_id "2L-_file_1_file_1_g5346.t1"; gene_id "2L-_file_1_file_1_g5346"; +2L AUGUSTUS start_codon 175434 175436 . + 0 transcript_id "2L+_file_1_file_1_g5347.t1"; gene_id "2L+_file_1_file_1_g5347"; +2L AUGUSTUS CDS 175434 175447 0.99 + 0 transcript_id "2L+_file_1_file_1_g5347.t1"; gene_id "2L+_file_1_file_1_g5347"; +2L AUGUSTUS exon 175434 175447 . + . transcript_id "2L+_file_1_file_1_g5347.t1"; gene_id "2L+_file_1_file_1_g5347"; +2L AUGUSTUS intron 175448 183760 0.99 + . transcript_id "2L+_file_1_file_1_g5347.t1"; gene_id "2L+_file_1_file_1_g5347"; +2L AUGUSTUS start_codon 183412 183414 . + 0 transcript_id "2L+_file_1_file_1_g5347.t2"; gene_id "2L+_file_1_file_1_g5347"; +2L AUGUSTUS start_codon 183412 183414 . + 0 transcript_id "2L+_file_1_file_1_g5347.t3"; gene_id "2L+_file_1_file_1_g5347"; +2L AUGUSTUS CDS 183412 183419 1 + 0 transcript_id "2L+_file_1_file_1_g5347.t2"; gene_id "2L+_file_1_file_1_g5347"; +2L AUGUSTUS CDS 183412 183419 1 + 0 transcript_id "2L+_file_1_file_1_g5347.t3"; gene_id "2L+_file_1_file_1_g5347"; +2L AUGUSTUS exon 183412 183419 . + . transcript_id "2L+_file_1_file_1_g5347.t2"; gene_id "2L+_file_1_file_1_g5347"; +2L AUGUSTUS exon 183412 183419 . + . transcript_id "2L+_file_1_file_1_g5347.t3"; gene_id "2L+_file_1_file_1_g5347"; +2L AUGUSTUS intron 183420 183760 1 + . transcript_id "2L+_file_1_file_1_g5347.t2"; gene_id "2L+_file_1_file_1_g5347"; +2L AUGUSTUS intron 183420 183760 1 + . transcript_id "2L+_file_1_file_1_g5347.t3"; gene_id "2L+_file_1_file_1_g5347"; +2L AUGUSTUS CDS 183761 185082 0.76 + 1 transcript_id "2L+_file_1_file_1_g5347.t3"; gene_id "2L+_file_1_file_1_g5347"; +2L AUGUSTUS CDS 183761 185082 0.78 + 1 transcript_id "2L+_file_1_file_1_g5347.t2"; gene_id "2L+_file_1_file_1_g5347"; +2L AUGUSTUS CDS 183761 185082 0.85 + 1 transcript_id "2L+_file_1_file_1_g5347.t1"; gene_id "2L+_file_1_file_1_g5347"; +2L AUGUSTUS exon 183761 185082 . + . transcript_id "2L+_file_1_file_1_g5347.t1"; gene_id "2L+_file_1_file_1_g5347"; +2L AUGUSTUS exon 183761 185082 . + . transcript_id "2L+_file_1_file_1_g5347.t2"; gene_id "2L+_file_1_file_1_g5347"; +2L AUGUSTUS exon 183761 185082 . + . transcript_id "2L+_file_1_file_1_g5347.t3"; gene_id "2L+_file_1_file_1_g5347"; +2L AUGUSTUS intron 185083 185151 1 + . transcript_id "2L+_file_1_file_1_g5347.t1"; gene_id "2L+_file_1_file_1_g5347"; +2L AUGUSTUS intron 185083 185151 1 + . transcript_id "2L+_file_1_file_1_g5347.t2"; gene_id "2L+_file_1_file_1_g5347"; +2L AUGUSTUS intron 185083 185151 1 + . transcript_id "2L+_file_1_file_1_g5347.t3"; gene_id "2L+_file_1_file_1_g5347"; +2L AUGUSTUS CDS 185152 186123 0.8 + 2 transcript_id "2L+_file_1_file_1_g5347.t1"; gene_id "2L+_file_1_file_1_g5347"; +2L AUGUSTUS CDS 185152 186123 0.83 + 2 transcript_id "2L+_file_1_file_1_g5347.t2"; gene_id "2L+_file_1_file_1_g5347"; +2L AUGUSTUS CDS 185152 186123 0.89 + 2 transcript_id "2L+_file_1_file_1_g5347.t3"; gene_id "2L+_file_1_file_1_g5347"; +2L AUGUSTUS exon 185152 186123 . + . transcript_id "2L+_file_1_file_1_g5347.t1"; gene_id "2L+_file_1_file_1_g5347"; +2L AUGUSTUS exon 185152 186123 . + . transcript_id "2L+_file_1_file_1_g5347.t2"; gene_id "2L+_file_1_file_1_g5347"; +2L AUGUSTUS exon 185152 186123 . + . transcript_id "2L+_file_1_file_1_g5347.t3"; gene_id "2L+_file_1_file_1_g5347"; +2L AUGUSTUS intron 186124 186192 1 + . transcript_id "2L+_file_1_file_1_g5347.t1"; gene_id "2L+_file_1_file_1_g5347"; +2L AUGUSTUS intron 186124 186192 1 + . transcript_id "2L+_file_1_file_1_g5347.t2"; gene_id "2L+_file_1_file_1_g5347"; +2L AUGUSTUS intron 186124 186192 1 + . transcript_id "2L+_file_1_file_1_g5347.t3"; gene_id "2L+_file_1_file_1_g5347"; +2L AUGUSTUS CDS 186193 186855 1 + 2 transcript_id "2L+_file_1_file_1_g5347.t1"; gene_id "2L+_file_1_file_1_g5347"; +2L AUGUSTUS CDS 186193 186855 1 + 2 transcript_id "2L+_file_1_file_1_g5347.t2"; gene_id "2L+_file_1_file_1_g5347"; +2L AUGUSTUS CDS 186193 186855 1 + 2 transcript_id "2L+_file_1_file_1_g5347.t3"; gene_id "2L+_file_1_file_1_g5347"; +2L AUGUSTUS exon 186193 186855 . + . transcript_id "2L+_file_1_file_1_g5347.t1"; gene_id "2L+_file_1_file_1_g5347"; +2L AUGUSTUS exon 186193 186855 . + . transcript_id "2L+_file_1_file_1_g5347.t2"; gene_id "2L+_file_1_file_1_g5347"; +2L AUGUSTUS exon 186193 186855 . + . transcript_id "2L+_file_1_file_1_g5347.t3"; gene_id "2L+_file_1_file_1_g5347"; +2L AUGUSTUS intron 186856 186909 1 + . transcript_id "2L+_file_1_file_1_g5347.t1"; gene_id "2L+_file_1_file_1_g5347"; +2L AUGUSTUS intron 186856 186909 1 + . transcript_id "2L+_file_1_file_1_g5347.t2"; gene_id "2L+_file_1_file_1_g5347"; +2L AUGUSTUS intron 186856 186909 1 + . transcript_id "2L+_file_1_file_1_g5347.t3"; gene_id "2L+_file_1_file_1_g5347"; +2L AUGUSTUS CDS 186910 187016 1 + 2 transcript_id "2L+_file_1_file_1_g5347.t1"; gene_id "2L+_file_1_file_1_g5347"; +2L AUGUSTUS CDS 186910 187016 1 + 2 transcript_id "2L+_file_1_file_1_g5347.t2"; gene_id "2L+_file_1_file_1_g5347"; +2L AUGUSTUS CDS 186910 187016 1 + 2 transcript_id "2L+_file_1_file_1_g5347.t3"; gene_id "2L+_file_1_file_1_g5347"; +2L AUGUSTUS exon 186910 187016 . + . transcript_id "2L+_file_1_file_1_g5347.t1"; gene_id "2L+_file_1_file_1_g5347"; +2L AUGUSTUS exon 186910 187016 . + . transcript_id "2L+_file_1_file_1_g5347.t2"; gene_id "2L+_file_1_file_1_g5347"; +2L AUGUSTUS exon 186910 187016 . + . transcript_id "2L+_file_1_file_1_g5347.t3"; gene_id "2L+_file_1_file_1_g5347"; +2L AUGUSTUS intron 187017 187481 1 + . transcript_id "2L+_file_1_file_1_g5347.t1"; gene_id "2L+_file_1_file_1_g5347"; +2L AUGUSTUS intron 187017 187481 1 + . transcript_id "2L+_file_1_file_1_g5347.t2"; gene_id "2L+_file_1_file_1_g5347"; +2L AUGUSTUS intron 187017 187481 1 + . transcript_id "2L+_file_1_file_1_g5347.t3"; gene_id "2L+_file_1_file_1_g5347"; +2L AUGUSTUS CDS 187482 199575 0.92 + 0 transcript_id "2L+_file_1_file_1_g5347.t1"; gene_id "2L+_file_1_file_1_g5347"; +2L AUGUSTUS CDS 187482 199575 0.92 + 0 transcript_id "2L+_file_1_file_1_g5347.t3"; gene_id "2L+_file_1_file_1_g5347"; +2L AUGUSTUS CDS 187482 199575 0.93 + 0 transcript_id "2L+_file_1_file_1_g5347.t2"; gene_id "2L+_file_1_file_1_g5347"; +2L AUGUSTUS exon 187482 199575 . + . transcript_id "2L+_file_1_file_1_g5347.t1"; gene_id "2L+_file_1_file_1_g5347"; +2L AUGUSTUS exon 187482 199575 . + . transcript_id "2L+_file_1_file_1_g5347.t2"; gene_id "2L+_file_1_file_1_g5347"; +2L AUGUSTUS exon 187482 199575 . + . transcript_id "2L+_file_1_file_1_g5347.t3"; gene_id "2L+_file_1_file_1_g5347"; +2L AUGUSTUS intron 199576 199636 1 + . transcript_id "2L+_file_1_file_1_g5347.t1"; gene_id "2L+_file_1_file_1_g5347"; +2L AUGUSTUS intron 199576 199636 1 + . transcript_id "2L+_file_1_file_1_g5347.t2"; gene_id "2L+_file_1_file_1_g5347"; +2L AUGUSTUS intron 199576 199636 1 + . transcript_id "2L+_file_1_file_1_g5347.t3"; gene_id "2L+_file_1_file_1_g5347"; +2L AUGUSTUS CDS 199637 199743 1 + 2 transcript_id "2L+_file_1_file_1_g5347.t1"; gene_id "2L+_file_1_file_1_g5347"; +2L AUGUSTUS CDS 199637 199743 1 + 2 transcript_id "2L+_file_1_file_1_g5347.t2"; gene_id "2L+_file_1_file_1_g5347"; +2L AUGUSTUS CDS 199637 199743 1 + 2 transcript_id "2L+_file_1_file_1_g5347.t3"; gene_id "2L+_file_1_file_1_g5347"; +2L AUGUSTUS exon 199637 199743 . + . transcript_id "2L+_file_1_file_1_g5347.t1"; gene_id "2L+_file_1_file_1_g5347"; +2L AUGUSTUS exon 199637 199743 . + . transcript_id "2L+_file_1_file_1_g5347.t2"; gene_id "2L+_file_1_file_1_g5347"; +2L AUGUSTUS exon 199637 199743 . + . transcript_id "2L+_file_1_file_1_g5347.t3"; gene_id "2L+_file_1_file_1_g5347"; +2L AUGUSTUS intron 199744 199902 1 + . transcript_id "2L+_file_1_file_1_g5347.t1"; gene_id "2L+_file_1_file_1_g5347"; +2L AUGUSTUS intron 199744 199902 1 + . transcript_id "2L+_file_1_file_1_g5347.t2"; gene_id "2L+_file_1_file_1_g5347"; +2L AUGUSTUS intron 199744 200119 1 + . transcript_id "2L+_file_1_file_1_g5347.t3"; gene_id "2L+_file_1_file_1_g5347"; +2L AUGUSTUS CDS 199903 199983 1 + 0 transcript_id "2L+_file_1_file_1_g5347.t1"; gene_id "2L+_file_1_file_1_g5347"; +2L AUGUSTUS CDS 199903 199983 1 + 0 transcript_id "2L+_file_1_file_1_g5347.t2"; gene_id "2L+_file_1_file_1_g5347"; +2L AUGUSTUS exon 199903 199983 . + . transcript_id "2L+_file_1_file_1_g5347.t1"; gene_id "2L+_file_1_file_1_g5347"; +2L AUGUSTUS exon 199903 199983 . + . transcript_id "2L+_file_1_file_1_g5347.t2"; gene_id "2L+_file_1_file_1_g5347"; +2L AUGUSTUS intron 199984 200119 1 + . transcript_id "2L+_file_1_file_1_g5347.t1"; gene_id "2L+_file_1_file_1_g5347"; +2L AUGUSTUS intron 199984 200119 1 + . transcript_id "2L+_file_1_file_1_g5347.t2"; gene_id "2L+_file_1_file_1_g5347"; +2L AUGUSTUS CDS 200120 200315 1 + 0 transcript_id "2L+_file_1_file_1_g5347.t1"; gene_id "2L+_file_1_file_1_g5347"; +2L AUGUSTUS CDS 200120 200315 1 + 0 transcript_id "2L+_file_1_file_1_g5347.t2"; gene_id "2L+_file_1_file_1_g5347"; +2L AUGUSTUS CDS 200120 200315 1 + 0 transcript_id "2L+_file_1_file_1_g5347.t3"; gene_id "2L+_file_1_file_1_g5347"; +2L AUGUSTUS exon 200120 200315 . + . transcript_id "2L+_file_1_file_1_g5347.t1"; gene_id "2L+_file_1_file_1_g5347"; +2L AUGUSTUS exon 200120 200315 . + . transcript_id "2L+_file_1_file_1_g5347.t2"; gene_id "2L+_file_1_file_1_g5347"; +2L AUGUSTUS exon 200120 200315 . + . transcript_id "2L+_file_1_file_1_g5347.t3"; gene_id "2L+_file_1_file_1_g5347"; +2L AUGUSTUS intron 200316 200375 1 + . transcript_id "2L+_file_1_file_1_g5347.t1"; gene_id "2L+_file_1_file_1_g5347"; +2L AUGUSTUS intron 200316 200375 1 + . transcript_id "2L+_file_1_file_1_g5347.t2"; gene_id "2L+_file_1_file_1_g5347"; +2L AUGUSTUS intron 200316 200375 1 + . transcript_id "2L+_file_1_file_1_g5347.t3"; gene_id "2L+_file_1_file_1_g5347"; +2L AUGUSTUS CDS 200376 200675 1 + 2 transcript_id "2L+_file_1_file_1_g5347.t1"; gene_id "2L+_file_1_file_1_g5347"; +2L AUGUSTUS CDS 200376 200675 1 + 2 transcript_id "2L+_file_1_file_1_g5347.t2"; gene_id "2L+_file_1_file_1_g5347"; +2L AUGUSTUS CDS 200376 200675 1 + 2 transcript_id "2L+_file_1_file_1_g5347.t3"; gene_id "2L+_file_1_file_1_g5347"; +2L AUGUSTUS exon 200376 200675 . + . transcript_id "2L+_file_1_file_1_g5347.t1"; gene_id "2L+_file_1_file_1_g5347"; +2L AUGUSTUS exon 200376 200675 . + . transcript_id "2L+_file_1_file_1_g5347.t2"; gene_id "2L+_file_1_file_1_g5347"; +2L AUGUSTUS exon 200376 200675 . + . transcript_id "2L+_file_1_file_1_g5347.t3"; gene_id "2L+_file_1_file_1_g5347"; +2L AUGUSTUS intron 200676 200741 1 + . transcript_id "2L+_file_1_file_1_g5347.t1"; gene_id "2L+_file_1_file_1_g5347"; +2L AUGUSTUS intron 200676 200741 1 + . transcript_id "2L+_file_1_file_1_g5347.t2"; gene_id "2L+_file_1_file_1_g5347"; +2L AUGUSTUS intron 200676 200741 1 + . transcript_id "2L+_file_1_file_1_g5347.t3"; gene_id "2L+_file_1_file_1_g5347"; +2L AUGUSTUS CDS 200742 201061 0.98 + 2 transcript_id "2L+_file_1_file_1_g5347.t1"; gene_id "2L+_file_1_file_1_g5347"; +2L AUGUSTUS CDS 200742 201061 1 + 2 transcript_id "2L+_file_1_file_1_g5347.t2"; gene_id "2L+_file_1_file_1_g5347"; +2L AUGUSTUS CDS 200742 201061 1 + 2 transcript_id "2L+_file_1_file_1_g5347.t3"; gene_id "2L+_file_1_file_1_g5347"; +2L AUGUSTUS exon 200742 201061 . + . transcript_id "2L+_file_1_file_1_g5347.t1"; gene_id "2L+_file_1_file_1_g5347"; +2L AUGUSTUS exon 200742 201061 . + . transcript_id "2L+_file_1_file_1_g5347.t2"; gene_id "2L+_file_1_file_1_g5347"; +2L AUGUSTUS exon 200742 201061 . + . transcript_id "2L+_file_1_file_1_g5347.t3"; gene_id "2L+_file_1_file_1_g5347"; +2L AUGUSTUS intron 201062 201126 1 + . transcript_id "2L+_file_1_file_1_g5347.t1"; gene_id "2L+_file_1_file_1_g5347"; +2L AUGUSTUS intron 201062 201126 1 + . transcript_id "2L+_file_1_file_1_g5347.t2"; gene_id "2L+_file_1_file_1_g5347"; +2L AUGUSTUS intron 201062 201126 1 + . transcript_id "2L+_file_1_file_1_g5347.t3"; gene_id "2L+_file_1_file_1_g5347"; +2L AUGUSTUS CDS 201127 201414 1 + 0 transcript_id "2L+_file_1_file_1_g5347.t1"; gene_id "2L+_file_1_file_1_g5347"; +2L AUGUSTUS CDS 201127 201414 1 + 0 transcript_id "2L+_file_1_file_1_g5347.t2"; gene_id "2L+_file_1_file_1_g5347"; +2L AUGUSTUS CDS 201127 201414 1 + 0 transcript_id "2L+_file_1_file_1_g5347.t3"; gene_id "2L+_file_1_file_1_g5347"; +2L AUGUSTUS exon 201127 201414 . + . transcript_id "2L+_file_1_file_1_g5347.t1"; gene_id "2L+_file_1_file_1_g5347"; +2L AUGUSTUS exon 201127 201414 . + . transcript_id "2L+_file_1_file_1_g5347.t2"; gene_id "2L+_file_1_file_1_g5347"; +2L AUGUSTUS exon 201127 201414 . + . transcript_id "2L+_file_1_file_1_g5347.t3"; gene_id "2L+_file_1_file_1_g5347"; +2L AUGUSTUS stop_codon 201412 201414 . + 0 transcript_id "2L+_file_1_file_1_g5347.t1"; gene_id "2L+_file_1_file_1_g5347"; +2L AUGUSTUS stop_codon 201412 201414 . + 0 transcript_id "2L+_file_1_file_1_g5347.t2"; gene_id "2L+_file_1_file_1_g5347"; +2L AUGUSTUS stop_codon 201412 201414 . + 0 transcript_id "2L+_file_1_file_1_g5347.t3"; gene_id "2L+_file_1_file_1_g5347"; +2L AUGUSTUS start_codon 203870 203872 . + 0 transcript_id "2L+_file_1_file_1_g5348.t1"; gene_id "2L+_file_1_file_1_g5348"; +2L AUGUSTUS CDS 203870 203891 1 + 0 transcript_id "2L+_file_1_file_1_g5348.t1"; gene_id "2L+_file_1_file_1_g5348"; +2L AUGUSTUS exon 203870 203891 . + . transcript_id "2L+_file_1_file_1_g5348.t1"; gene_id "2L+_file_1_file_1_g5348"; +2L AUGUSTUS intron 203892 203992 1 + . transcript_id "2L+_file_1_file_1_g5348.t1"; gene_id "2L+_file_1_file_1_g5348"; +2L AUGUSTUS CDS 203993 204717 1 + 2 transcript_id "2L+_file_1_file_1_g5348.t1"; gene_id "2L+_file_1_file_1_g5348"; +2L AUGUSTUS exon 203993 204717 . + . transcript_id "2L+_file_1_file_1_g5348.t1"; gene_id "2L+_file_1_file_1_g5348"; +2L AUGUSTUS stop_codon 204715 204717 . + 0 transcript_id "2L+_file_1_file_1_g5348.t1"; gene_id "2L+_file_1_file_1_g5348"; +2L AUGUSTUS stop_codon 205044 205046 . - 0 transcript_id "2L-_file_1_file_1_g5349.t1"; gene_id "2L-_file_1_file_1_g5349"; +2L GeneMark.hmm stop_codon 205044 205046 . - 0 gene_id "2L-_file_1_file_2_2612_g"; transcript_id "2L-_file_1_file_2_2612_t"; count "file_1_file_2_1_1"; +2L AUGUSTUS CDS 205044 205212 1 - 1 transcript_id "2L-_file_1_file_1_g5349.t1"; gene_id "2L-_file_1_file_1_g5349"; +2L AUGUSTUS exon 205044 205212 . - . transcript_id "2L-_file_1_file_1_g5349.t1"; gene_id "2L-_file_1_file_1_g5349"; +2L GeneMark.hmm CDS 205044 205212 . - 1 gene_id "2L-_file_1_file_2_2612_g"; transcript_id "2L-_file_1_file_2_2612_t"; cds_type "file_1_file_2_Terminal"; count "file_1_file_2_3_3"; anchored "file_1_file_2_0_1"; +2L GeneMark.hmm exon 205044 205212 0 - . gene_id "2L-_file_1_file_2_2612_g"; transcript_id "2L-_file_1_file_2_2612_t"; cds_type "file_1_file_2_Terminal"; count "file_1_file_2_3_3"; anchored "file_1_file_2_0_1"; +2L AUGUSTUS intron 205213 205271 1 - . transcript_id "2L-_file_1_file_1_g5349.t1"; gene_id "2L-_file_1_file_1_g5349"; +2L AUGUSTUS CDS 205272 205476 1 - 2 transcript_id "2L-_file_1_file_1_g5349.t1"; gene_id "2L-_file_1_file_1_g5349"; +2L AUGUSTUS exon 205272 205476 . - . transcript_id "2L-_file_1_file_1_g5349.t1"; gene_id "2L-_file_1_file_1_g5349"; +2L GeneMark.hmm CDS 205272 205943 . - 1 gene_id "2L-_file_1_file_2_2612_g"; transcript_id "2L-_file_1_file_2_2612_t"; cds_type "file_1_file_2_Internal"; count "file_1_file_2_2_3"; anchored "file_1_file_2_1_1"; +2L GeneMark.hmm exon 205272 205943 0 - . gene_id "2L-_file_1_file_2_2612_g"; transcript_id "2L-_file_1_file_2_2612_t"; cds_type "file_1_file_2_Internal"; count "file_1_file_2_2_3"; anchored "file_1_file_2_1_1"; +2L AUGUSTUS intron 205477 205536 1 - . transcript_id "2L-_file_1_file_1_g5349.t1"; gene_id "2L-_file_1_file_1_g5349"; +2L AUGUSTUS CDS 205537 205943 1 - 1 transcript_id "2L-_file_1_file_1_g5349.t1"; gene_id "2L-_file_1_file_1_g5349"; +2L AUGUSTUS exon 205537 205943 . - . transcript_id "2L-_file_1_file_1_g5349.t1"; gene_id "2L-_file_1_file_1_g5349"; +2L AUGUSTUS intron 205944 206000 1 - . transcript_id "2L-_file_1_file_1_g5349.t1"; gene_id "2L-_file_1_file_1_g5349"; +2L AUGUSTUS CDS 206001 206044 0.99 - 0 transcript_id "2L-_file_1_file_1_g5349.t1"; gene_id "2L-_file_1_file_1_g5349"; +2L AUGUSTUS exon 206001 206044 . - . transcript_id "2L-_file_1_file_1_g5349.t1"; gene_id "2L-_file_1_file_1_g5349"; +2L GeneMark.hmm CDS 206001 206044 . - 0 gene_id "2L-_file_1_file_2_2612_g"; transcript_id "2L-_file_1_file_2_2612_t"; cds_type "file_1_file_2_Initial"; count "file_1_file_2_1_3"; anchored "file_1_file_2_1_0"; +2L GeneMark.hmm exon 206001 206044 0 - . gene_id "2L-_file_1_file_2_2612_g"; transcript_id "2L-_file_1_file_2_2612_t"; cds_type "file_1_file_2_Initial"; count "file_1_file_2_1_3"; anchored "file_1_file_2_1_0"; +2L AUGUSTUS start_codon 206042 206044 . - 0 transcript_id "2L-_file_1_file_1_g5349.t1"; gene_id "2L-_file_1_file_1_g5349"; +2L GeneMark.hmm start_codon 206042 206044 . - 0 gene_id "2L-_file_1_file_2_2612_g"; transcript_id "2L-_file_1_file_2_2612_t"; count "file_1_file_2_1_1"; +2L AUGUSTUS start_codon 207512 207514 . + 0 transcript_id "2L+_file_1_file_1_g5350.t1"; gene_id "2L+_file_1_file_1_g5350"; +2L AUGUSTUS CDS 207512 207631 1 + 0 transcript_id "2L+_file_1_file_1_g5350.t1"; gene_id "2L+_file_1_file_1_g5350"; +2L AUGUSTUS exon 207512 207631 . + . transcript_id "2L+_file_1_file_1_g5350.t1"; gene_id "2L+_file_1_file_1_g5350"; +2L AUGUSTUS intron 207632 207710 1 + . transcript_id "2L+_file_1_file_1_g5350.t1"; gene_id "2L+_file_1_file_1_g5350"; +2L AUGUSTUS CDS 207711 208608 1 + 0 transcript_id "2L+_file_1_file_1_g5350.t1"; gene_id "2L+_file_1_file_1_g5350"; +2L AUGUSTUS exon 207711 208608 . + . transcript_id "2L+_file_1_file_1_g5350.t1"; gene_id "2L+_file_1_file_1_g5350"; +2L AUGUSTUS intron 208609 208728 1 + . transcript_id "2L+_file_1_file_1_g5350.t1"; gene_id "2L+_file_1_file_1_g5350"; +2L AUGUSTUS CDS 208729 209858 1 + 2 transcript_id "2L+_file_1_file_1_g5350.t1"; gene_id "2L+_file_1_file_1_g5350"; +2L AUGUSTUS exon 208729 209858 . + . transcript_id "2L+_file_1_file_1_g5350.t1"; gene_id "2L+_file_1_file_1_g5350"; +2L AUGUSTUS stop_codon 209856 209858 . + 0 transcript_id "2L+_file_1_file_1_g5350.t1"; gene_id "2L+_file_1_file_1_g5350"; +2L AUGUSTUS stop_codon 212185 212187 . - 0 transcript_id "2L-_file_1_file_1_g5351.t1"; gene_id "2L-_file_1_file_1_g5351"; +2L AUGUSTUS stop_codon 212185 212187 . - 0 transcript_id "2L-_file_1_file_1_g5351.t2"; gene_id "2L-_file_1_file_1_g5351"; +2L AUGUSTUS stop_codon 212185 212187 . - 0 transcript_id "2L-_file_1_file_1_g5351.t3"; gene_id "2L-_file_1_file_1_g5351"; +2L AUGUSTUS stop_codon 212185 212187 . - 0 transcript_id "2L-_file_1_file_1_g5351.t4"; gene_id "2L-_file_1_file_1_g5351"; +2L AUGUSTUS CDS 212185 214942 1 - 1 transcript_id "2L-_file_1_file_1_g5351.t1"; gene_id "2L-_file_1_file_1_g5351"; +2L AUGUSTUS CDS 212185 214942 1 - 1 transcript_id "2L-_file_1_file_1_g5351.t2"; gene_id "2L-_file_1_file_1_g5351"; +2L AUGUSTUS CDS 212185 214942 1 - 1 transcript_id "2L-_file_1_file_1_g5351.t3"; gene_id "2L-_file_1_file_1_g5351"; +2L AUGUSTUS CDS 212185 214942 1 - 1 transcript_id "2L-_file_1_file_1_g5351.t4"; gene_id "2L-_file_1_file_1_g5351"; +2L AUGUSTUS exon 212185 214942 . - . transcript_id "2L-_file_1_file_1_g5351.t1"; gene_id "2L-_file_1_file_1_g5351"; +2L AUGUSTUS exon 212185 214942 . - . transcript_id "2L-_file_1_file_1_g5351.t2"; gene_id "2L-_file_1_file_1_g5351"; +2L AUGUSTUS exon 212185 214942 . - . transcript_id "2L-_file_1_file_1_g5351.t3"; gene_id "2L-_file_1_file_1_g5351"; +2L AUGUSTUS exon 212185 214942 . - . transcript_id "2L-_file_1_file_1_g5351.t4"; gene_id "2L-_file_1_file_1_g5351"; +2L AUGUSTUS intron 214943 215033 1 - . transcript_id "2L-_file_1_file_1_g5351.t1"; gene_id "2L-_file_1_file_1_g5351"; +2L AUGUSTUS intron 214943 215033 1 - . transcript_id "2L-_file_1_file_1_g5351.t2"; gene_id "2L-_file_1_file_1_g5351"; +2L AUGUSTUS intron 214943 215033 1 - . transcript_id "2L-_file_1_file_1_g5351.t3"; gene_id "2L-_file_1_file_1_g5351"; +2L AUGUSTUS intron 214943 215033 1 - . transcript_id "2L-_file_1_file_1_g5351.t4"; gene_id "2L-_file_1_file_1_g5351"; +2L AUGUSTUS CDS 215034 215676 1 - 2 transcript_id "2L-_file_1_file_1_g5351.t1"; gene_id "2L-_file_1_file_1_g5351"; +2L AUGUSTUS CDS 215034 215676 1 - 2 transcript_id "2L-_file_1_file_1_g5351.t2"; gene_id "2L-_file_1_file_1_g5351"; +2L AUGUSTUS CDS 215034 215676 1 - 2 transcript_id "2L-_file_1_file_1_g5351.t3"; gene_id "2L-_file_1_file_1_g5351"; +2L AUGUSTUS CDS 215034 215676 1 - 2 transcript_id "2L-_file_1_file_1_g5351.t4"; gene_id "2L-_file_1_file_1_g5351"; +2L AUGUSTUS exon 215034 215676 . - . transcript_id "2L-_file_1_file_1_g5351.t1"; gene_id "2L-_file_1_file_1_g5351"; +2L AUGUSTUS exon 215034 215676 . - . transcript_id "2L-_file_1_file_1_g5351.t2"; gene_id "2L-_file_1_file_1_g5351"; +2L AUGUSTUS exon 215034 215676 . - . transcript_id "2L-_file_1_file_1_g5351.t3"; gene_id "2L-_file_1_file_1_g5351"; +2L AUGUSTUS exon 215034 215676 . - . transcript_id "2L-_file_1_file_1_g5351.t4"; gene_id "2L-_file_1_file_1_g5351"; +2L AUGUSTUS intron 215677 215772 1 - . transcript_id "2L-_file_1_file_1_g5351.t1"; gene_id "2L-_file_1_file_1_g5351"; +2L AUGUSTUS intron 215677 215772 1 - . transcript_id "2L-_file_1_file_1_g5351.t2"; gene_id "2L-_file_1_file_1_g5351"; +2L AUGUSTUS intron 215677 215772 1 - . transcript_id "2L-_file_1_file_1_g5351.t3"; gene_id "2L-_file_1_file_1_g5351"; +2L AUGUSTUS intron 215677 215772 1 - . transcript_id "2L-_file_1_file_1_g5351.t4"; gene_id "2L-_file_1_file_1_g5351"; +2L AUGUSTUS CDS 215773 216007 1 - 0 transcript_id "2L-_file_1_file_1_g5351.t1"; gene_id "2L-_file_1_file_1_g5351"; +2L AUGUSTUS CDS 215773 216007 1 - 0 transcript_id "2L-_file_1_file_1_g5351.t2"; gene_id "2L-_file_1_file_1_g5351"; +2L AUGUSTUS CDS 215773 216007 1 - 0 transcript_id "2L-_file_1_file_1_g5351.t3"; gene_id "2L-_file_1_file_1_g5351"; +2L AUGUSTUS CDS 215773 216007 1 - 0 transcript_id "2L-_file_1_file_1_g5351.t4"; gene_id "2L-_file_1_file_1_g5351"; +2L AUGUSTUS exon 215773 216007 . - . transcript_id "2L-_file_1_file_1_g5351.t1"; gene_id "2L-_file_1_file_1_g5351"; +2L AUGUSTUS exon 215773 216007 . - . transcript_id "2L-_file_1_file_1_g5351.t2"; gene_id "2L-_file_1_file_1_g5351"; +2L AUGUSTUS exon 215773 216007 . - . transcript_id "2L-_file_1_file_1_g5351.t3"; gene_id "2L-_file_1_file_1_g5351"; +2L AUGUSTUS exon 215773 216007 . - . transcript_id "2L-_file_1_file_1_g5351.t4"; gene_id "2L-_file_1_file_1_g5351"; +2L AUGUSTUS intron 216008 216076 1 - . transcript_id "2L-_file_1_file_1_g5351.t1"; gene_id "2L-_file_1_file_1_g5351"; +2L AUGUSTUS intron 216008 216076 1 - . transcript_id "2L-_file_1_file_1_g5351.t2"; gene_id "2L-_file_1_file_1_g5351"; +2L AUGUSTUS intron 216008 216076 1 - . transcript_id "2L-_file_1_file_1_g5351.t3"; gene_id "2L-_file_1_file_1_g5351"; +2L AUGUSTUS intron 216008 216076 1 - . transcript_id "2L-_file_1_file_1_g5351.t4"; gene_id "2L-_file_1_file_1_g5351"; +2L AUGUSTUS CDS 216077 216275 1 - 1 transcript_id "2L-_file_1_file_1_g5351.t1"; gene_id "2L-_file_1_file_1_g5351"; +2L AUGUSTUS CDS 216077 216275 1 - 1 transcript_id "2L-_file_1_file_1_g5351.t2"; gene_id "2L-_file_1_file_1_g5351"; +2L AUGUSTUS CDS 216077 216275 1 - 1 transcript_id "2L-_file_1_file_1_g5351.t3"; gene_id "2L-_file_1_file_1_g5351"; +2L AUGUSTUS CDS 216077 216275 1 - 1 transcript_id "2L-_file_1_file_1_g5351.t4"; gene_id "2L-_file_1_file_1_g5351"; +2L AUGUSTUS exon 216077 216275 . - . transcript_id "2L-_file_1_file_1_g5351.t1"; gene_id "2L-_file_1_file_1_g5351"; +2L AUGUSTUS exon 216077 216275 . - . transcript_id "2L-_file_1_file_1_g5351.t2"; gene_id "2L-_file_1_file_1_g5351"; +2L AUGUSTUS exon 216077 216275 . - . transcript_id "2L-_file_1_file_1_g5351.t3"; gene_id "2L-_file_1_file_1_g5351"; +2L AUGUSTUS exon 216077 216275 . - . transcript_id "2L-_file_1_file_1_g5351.t4"; gene_id "2L-_file_1_file_1_g5351"; +2L AUGUSTUS intron 216276 216344 1 - . transcript_id "2L-_file_1_file_1_g5351.t1"; gene_id "2L-_file_1_file_1_g5351"; +2L AUGUSTUS intron 216276 216344 1 - . transcript_id "2L-_file_1_file_1_g5351.t2"; gene_id "2L-_file_1_file_1_g5351"; +2L AUGUSTUS intron 216276 216344 1 - . transcript_id "2L-_file_1_file_1_g5351.t3"; gene_id "2L-_file_1_file_1_g5351"; +2L AUGUSTUS intron 216276 216344 1 - . transcript_id "2L-_file_1_file_1_g5351.t4"; gene_id "2L-_file_1_file_1_g5351"; +2L AUGUSTUS CDS 216345 216573 1 - 2 transcript_id "2L-_file_1_file_1_g5351.t1"; gene_id "2L-_file_1_file_1_g5351"; +2L AUGUSTUS CDS 216345 216573 1 - 2 transcript_id "2L-_file_1_file_1_g5351.t2"; gene_id "2L-_file_1_file_1_g5351"; +2L AUGUSTUS CDS 216345 216573 1 - 2 transcript_id "2L-_file_1_file_1_g5351.t3"; gene_id "2L-_file_1_file_1_g5351"; +2L AUGUSTUS CDS 216345 216573 1 - 2 transcript_id "2L-_file_1_file_1_g5351.t4"; gene_id "2L-_file_1_file_1_g5351"; +2L AUGUSTUS exon 216345 216573 . - . transcript_id "2L-_file_1_file_1_g5351.t1"; gene_id "2L-_file_1_file_1_g5351"; +2L AUGUSTUS exon 216345 216573 . - . transcript_id "2L-_file_1_file_1_g5351.t2"; gene_id "2L-_file_1_file_1_g5351"; +2L AUGUSTUS exon 216345 216573 . - . transcript_id "2L-_file_1_file_1_g5351.t3"; gene_id "2L-_file_1_file_1_g5351"; +2L AUGUSTUS exon 216345 216573 . - . transcript_id "2L-_file_1_file_1_g5351.t4"; gene_id "2L-_file_1_file_1_g5351"; +2L AUGUSTUS intron 216574 216631 1 - . transcript_id "2L-_file_1_file_1_g5351.t1"; gene_id "2L-_file_1_file_1_g5351"; +2L AUGUSTUS intron 216574 216631 1 - . transcript_id "2L-_file_1_file_1_g5351.t2"; gene_id "2L-_file_1_file_1_g5351"; +2L AUGUSTUS intron 216574 216631 1 - . transcript_id "2L-_file_1_file_1_g5351.t3"; gene_id "2L-_file_1_file_1_g5351"; +2L AUGUSTUS intron 216574 216631 1 - . transcript_id "2L-_file_1_file_1_g5351.t4"; gene_id "2L-_file_1_file_1_g5351"; +2L AUGUSTUS CDS 216632 218885 0.99 - 0 transcript_id "2L-_file_1_file_1_g5351.t1"; gene_id "2L-_file_1_file_1_g5351"; +2L AUGUSTUS CDS 216632 218885 1 - 0 transcript_id "2L-_file_1_file_1_g5351.t2"; gene_id "2L-_file_1_file_1_g5351"; +2L AUGUSTUS CDS 216632 218885 1 - 0 transcript_id "2L-_file_1_file_1_g5351.t3"; gene_id "2L-_file_1_file_1_g5351"; +2L AUGUSTUS CDS 216632 218885 1 - 0 transcript_id "2L-_file_1_file_1_g5351.t4"; gene_id "2L-_file_1_file_1_g5351"; +2L AUGUSTUS exon 216632 218885 . - . transcript_id "2L-_file_1_file_1_g5351.t1"; gene_id "2L-_file_1_file_1_g5351"; +2L AUGUSTUS exon 216632 218885 . - . transcript_id "2L-_file_1_file_1_g5351.t2"; gene_id "2L-_file_1_file_1_g5351"; +2L AUGUSTUS exon 216632 218885 . - . transcript_id "2L-_file_1_file_1_g5351.t3"; gene_id "2L-_file_1_file_1_g5351"; +2L AUGUSTUS exon 216632 218885 . - . transcript_id "2L-_file_1_file_1_g5351.t4"; gene_id "2L-_file_1_file_1_g5351"; +2L AUGUSTUS intron 218886 221505 0.99 - . transcript_id "2L-_file_1_file_1_g5351.t1"; gene_id "2L-_file_1_file_1_g5351"; +2L AUGUSTUS intron 218886 226115 1 - . transcript_id "2L-_file_1_file_1_g5351.t2"; gene_id "2L-_file_1_file_1_g5351"; +2L AUGUSTUS intron 218886 226115 1 - . transcript_id "2L-_file_1_file_1_g5351.t3"; gene_id "2L-_file_1_file_1_g5351"; +2L AUGUSTUS intron 218886 226115 1 - . transcript_id "2L-_file_1_file_1_g5351.t4"; gene_id "2L-_file_1_file_1_g5351"; +2L AUGUSTUS CDS 221506 221643 0.95 - 0 transcript_id "2L-_file_1_file_1_g5351.t1"; gene_id "2L-_file_1_file_1_g5351"; +2L AUGUSTUS exon 221506 221643 . - . transcript_id "2L-_file_1_file_1_g5351.t1"; gene_id "2L-_file_1_file_1_g5351"; +2L AUGUSTUS start_codon 221641 221643 . - 0 transcript_id "2L-_file_1_file_1_g5351.t1"; gene_id "2L-_file_1_file_1_g5351"; +2L AUGUSTUS CDS 226116 226508 1 - 0 transcript_id "2L-_file_1_file_1_g5351.t2"; gene_id "2L-_file_1_file_1_g5351"; +2L AUGUSTUS CDS 226116 226508 1 - 0 transcript_id "2L-_file_1_file_1_g5351.t3"; gene_id "2L-_file_1_file_1_g5351"; +2L AUGUSTUS CDS 226116 226508 1 - 0 transcript_id "2L-_file_1_file_1_g5351.t4"; gene_id "2L-_file_1_file_1_g5351"; +2L AUGUSTUS exon 226116 226508 . - . transcript_id "2L-_file_1_file_1_g5351.t2"; gene_id "2L-_file_1_file_1_g5351"; +2L AUGUSTUS exon 226116 226508 . - . transcript_id "2L-_file_1_file_1_g5351.t3"; gene_id "2L-_file_1_file_1_g5351"; +2L AUGUSTUS exon 226116 226508 . - . transcript_id "2L-_file_1_file_1_g5351.t4"; gene_id "2L-_file_1_file_1_g5351"; +2L AUGUSTUS intron 226509 227371 1 - . transcript_id "2L-_file_1_file_1_g5351.t2"; gene_id "2L-_file_1_file_1_g5351"; +2L AUGUSTUS intron 226509 227371 1 - . transcript_id "2L-_file_1_file_1_g5351.t3"; gene_id "2L-_file_1_file_1_g5351"; +2L AUGUSTUS intron 226509 227371 1 - . transcript_id "2L-_file_1_file_1_g5351.t4"; gene_id "2L-_file_1_file_1_g5351"; +2L AUGUSTUS CDS 227372 227547 1 - 2 transcript_id "2L-_file_1_file_1_g5351.t2"; gene_id "2L-_file_1_file_1_g5351"; +2L AUGUSTUS CDS 227372 227547 1 - 2 transcript_id "2L-_file_1_file_1_g5351.t3"; gene_id "2L-_file_1_file_1_g5351"; +2L AUGUSTUS CDS 227372 227547 1 - 2 transcript_id "2L-_file_1_file_1_g5351.t4"; gene_id "2L-_file_1_file_1_g5351"; +2L AUGUSTUS exon 227372 227547 . - . transcript_id "2L-_file_1_file_1_g5351.t2"; gene_id "2L-_file_1_file_1_g5351"; +2L AUGUSTUS exon 227372 227547 . - . transcript_id "2L-_file_1_file_1_g5351.t3"; gene_id "2L-_file_1_file_1_g5351"; +2L AUGUSTUS exon 227372 227547 . - . transcript_id "2L-_file_1_file_1_g5351.t4"; gene_id "2L-_file_1_file_1_g5351"; +2L AUGUSTUS intron 227548 228132 1 - . transcript_id "2L-_file_1_file_1_g5351.t2"; gene_id "2L-_file_1_file_1_g5351"; +2L AUGUSTUS intron 227548 228132 1 - . transcript_id "2L-_file_1_file_1_g5351.t3"; gene_id "2L-_file_1_file_1_g5351"; +2L AUGUSTUS intron 227548 228132 1 - . transcript_id "2L-_file_1_file_1_g5351.t4"; gene_id "2L-_file_1_file_1_g5351"; +2L AUGUSTUS CDS 228133 228281 1 - 1 transcript_id "2L-_file_1_file_1_g5351.t2"; gene_id "2L-_file_1_file_1_g5351"; +2L AUGUSTUS CDS 228133 228281 1 - 1 transcript_id "2L-_file_1_file_1_g5351.t3"; gene_id "2L-_file_1_file_1_g5351"; +2L AUGUSTUS CDS 228133 228281 1 - 1 transcript_id "2L-_file_1_file_1_g5351.t4"; gene_id "2L-_file_1_file_1_g5351"; +2L AUGUSTUS exon 228133 228281 . - . transcript_id "2L-_file_1_file_1_g5351.t2"; gene_id "2L-_file_1_file_1_g5351"; +2L AUGUSTUS exon 228133 228281 . - . transcript_id "2L-_file_1_file_1_g5351.t3"; gene_id "2L-_file_1_file_1_g5351"; +2L AUGUSTUS exon 228133 228281 . - . transcript_id "2L-_file_1_file_1_g5351.t4"; gene_id "2L-_file_1_file_1_g5351"; +2L AUGUSTUS intron 228282 229172 1 - . transcript_id "2L-_file_1_file_1_g5351.t2"; gene_id "2L-_file_1_file_1_g5351"; +2L AUGUSTUS intron 228282 229172 1 - . transcript_id "2L-_file_1_file_1_g5351.t3"; gene_id "2L-_file_1_file_1_g5351"; +2L AUGUSTUS intron 228282 229172 1 - . transcript_id "2L-_file_1_file_1_g5351.t4"; gene_id "2L-_file_1_file_1_g5351"; +2L AUGUSTUS CDS 229173 229382 1 - 1 transcript_id "2L-_file_1_file_1_g5351.t2"; gene_id "2L-_file_1_file_1_g5351"; +2L AUGUSTUS CDS 229173 229382 1 - 1 transcript_id "2L-_file_1_file_1_g5351.t3"; gene_id "2L-_file_1_file_1_g5351"; +2L AUGUSTUS CDS 229173 229382 1 - 1 transcript_id "2L-_file_1_file_1_g5351.t4"; gene_id "2L-_file_1_file_1_g5351"; +2L AUGUSTUS exon 229173 229382 . - . transcript_id "2L-_file_1_file_1_g5351.t2"; gene_id "2L-_file_1_file_1_g5351"; +2L AUGUSTUS exon 229173 229382 . - . transcript_id "2L-_file_1_file_1_g5351.t3"; gene_id "2L-_file_1_file_1_g5351"; +2L AUGUSTUS exon 229173 229382 . - . transcript_id "2L-_file_1_file_1_g5351.t4"; gene_id "2L-_file_1_file_1_g5351"; +2L AUGUSTUS intron 229383 229929 0.82 - . transcript_id "2L-_file_1_file_1_g5351.t4"; gene_id "2L-_file_1_file_1_g5351"; +2L AUGUSTUS intron 229383 230537 1 - . transcript_id "2L-_file_1_file_1_g5351.t2"; gene_id "2L-_file_1_file_1_g5351"; +2L AUGUSTUS intron 229383 230537 1 - . transcript_id "2L-_file_1_file_1_g5351.t3"; gene_id "2L-_file_1_file_1_g5351"; +2L AUGUSTUS CDS 229930 229977 0.62 - 1 transcript_id "2L-_file_1_file_1_g5351.t4"; gene_id "2L-_file_1_file_1_g5351"; +2L AUGUSTUS exon 229930 229977 . - . transcript_id "2L-_file_1_file_1_g5351.t4"; gene_id "2L-_file_1_file_1_g5351"; +2L AUGUSTUS intron 229978 230537 0.62 - . transcript_id "2L-_file_1_file_1_g5351.t4"; gene_id "2L-_file_1_file_1_g5351"; +2L AUGUSTUS CDS 230538 230627 1 - 1 transcript_id "2L-_file_1_file_1_g5351.t2"; gene_id "2L-_file_1_file_1_g5351"; +2L AUGUSTUS CDS 230538 230627 1 - 1 transcript_id "2L-_file_1_file_1_g5351.t3"; gene_id "2L-_file_1_file_1_g5351"; +2L AUGUSTUS CDS 230538 230627 1 - 1 transcript_id "2L-_file_1_file_1_g5351.t4"; gene_id "2L-_file_1_file_1_g5351"; +2L AUGUSTUS exon 230538 230627 . - . transcript_id "2L-_file_1_file_1_g5351.t2"; gene_id "2L-_file_1_file_1_g5351"; +2L AUGUSTUS exon 230538 230627 . - . transcript_id "2L-_file_1_file_1_g5351.t3"; gene_id "2L-_file_1_file_1_g5351"; +2L AUGUSTUS exon 230538 230627 . - . transcript_id "2L-_file_1_file_1_g5351.t4"; gene_id "2L-_file_1_file_1_g5351"; +2L AUGUSTUS intron 230628 230757 1 - . transcript_id "2L-_file_1_file_1_g5351.t2"; gene_id "2L-_file_1_file_1_g5351"; +2L AUGUSTUS intron 230628 230757 1 - . transcript_id "2L-_file_1_file_1_g5351.t3"; gene_id "2L-_file_1_file_1_g5351"; +2L AUGUSTUS intron 230628 230757 1 - . transcript_id "2L-_file_1_file_1_g5351.t4"; gene_id "2L-_file_1_file_1_g5351"; +2L AUGUSTUS CDS 230758 231034 1 - 2 transcript_id "2L-_file_1_file_1_g5351.t2"; gene_id "2L-_file_1_file_1_g5351"; +2L AUGUSTUS CDS 230758 231034 1 - 2 transcript_id "2L-_file_1_file_1_g5351.t3"; gene_id "2L-_file_1_file_1_g5351"; +2L AUGUSTUS CDS 230758 231034 1 - 2 transcript_id "2L-_file_1_file_1_g5351.t4"; gene_id "2L-_file_1_file_1_g5351"; +2L AUGUSTUS exon 230758 231034 . - . transcript_id "2L-_file_1_file_1_g5351.t2"; gene_id "2L-_file_1_file_1_g5351"; +2L AUGUSTUS exon 230758 231034 . - . transcript_id "2L-_file_1_file_1_g5351.t3"; gene_id "2L-_file_1_file_1_g5351"; +2L AUGUSTUS exon 230758 231034 . - . transcript_id "2L-_file_1_file_1_g5351.t4"; gene_id "2L-_file_1_file_1_g5351"; +2L AUGUSTUS intron 231035 231947 1 - . transcript_id "2L-_file_1_file_1_g5351.t2"; gene_id "2L-_file_1_file_1_g5351"; +2L AUGUSTUS intron 231035 231962 1 - . transcript_id "2L-_file_1_file_1_g5351.t3"; gene_id "2L-_file_1_file_1_g5351"; +2L AUGUSTUS intron 231035 231962 1 - . transcript_id "2L-_file_1_file_1_g5351.t4"; gene_id "2L-_file_1_file_1_g5351"; +2L AUGUSTUS CDS 231948 232101 1 - 0 transcript_id "2L-_file_1_file_1_g5351.t2"; gene_id "2L-_file_1_file_1_g5351"; +2L AUGUSTUS exon 231948 232101 . - . transcript_id "2L-_file_1_file_1_g5351.t2"; gene_id "2L-_file_1_file_1_g5351"; +2L AUGUSTUS CDS 231963 232101 1 - 0 transcript_id "2L-_file_1_file_1_g5351.t3"; gene_id "2L-_file_1_file_1_g5351"; +2L AUGUSTUS CDS 231963 232101 1 - 0 transcript_id "2L-_file_1_file_1_g5351.t4"; gene_id "2L-_file_1_file_1_g5351"; +2L AUGUSTUS exon 231963 232101 . - . transcript_id "2L-_file_1_file_1_g5351.t3"; gene_id "2L-_file_1_file_1_g5351"; +2L AUGUSTUS exon 231963 232101 . - . transcript_id "2L-_file_1_file_1_g5351.t4"; gene_id "2L-_file_1_file_1_g5351"; +2L AUGUSTUS intron 232102 232291 1 - . transcript_id "2L-_file_1_file_1_g5351.t2"; gene_id "2L-_file_1_file_1_g5351"; +2L AUGUSTUS intron 232102 232291 1 - . transcript_id "2L-_file_1_file_1_g5351.t3"; gene_id "2L-_file_1_file_1_g5351"; +2L AUGUSTUS intron 232102 232291 1 - . transcript_id "2L-_file_1_file_1_g5351.t4"; gene_id "2L-_file_1_file_1_g5351"; +2L AUGUSTUS CDS 232292 232379 1 - 1 transcript_id "2L-_file_1_file_1_g5351.t2"; gene_id "2L-_file_1_file_1_g5351"; +2L AUGUSTUS CDS 232292 232379 1 - 1 transcript_id "2L-_file_1_file_1_g5351.t3"; gene_id "2L-_file_1_file_1_g5351"; +2L AUGUSTUS CDS 232292 232379 1 - 1 transcript_id "2L-_file_1_file_1_g5351.t4"; gene_id "2L-_file_1_file_1_g5351"; +2L AUGUSTUS exon 232292 232379 . - . transcript_id "2L-_file_1_file_1_g5351.t2"; gene_id "2L-_file_1_file_1_g5351"; +2L AUGUSTUS exon 232292 232379 . - . transcript_id "2L-_file_1_file_1_g5351.t3"; gene_id "2L-_file_1_file_1_g5351"; +2L AUGUSTUS exon 232292 232379 . - . transcript_id "2L-_file_1_file_1_g5351.t4"; gene_id "2L-_file_1_file_1_g5351"; +2L AUGUSTUS intron 232380 232510 1 - . transcript_id "2L-_file_1_file_1_g5351.t2"; gene_id "2L-_file_1_file_1_g5351"; +2L AUGUSTUS intron 232380 232510 1 - . transcript_id "2L-_file_1_file_1_g5351.t3"; gene_id "2L-_file_1_file_1_g5351"; +2L AUGUSTUS intron 232380 232510 1 - . transcript_id "2L-_file_1_file_1_g5351.t4"; gene_id "2L-_file_1_file_1_g5351"; +2L AUGUSTUS CDS 232511 232524 1 - 0 transcript_id "2L-_file_1_file_1_g5351.t2"; gene_id "2L-_file_1_file_1_g5351"; +2L AUGUSTUS CDS 232511 232524 1 - 0 transcript_id "2L-_file_1_file_1_g5351.t3"; gene_id "2L-_file_1_file_1_g5351"; +2L AUGUSTUS CDS 232511 232524 1 - 0 transcript_id "2L-_file_1_file_1_g5351.t4"; gene_id "2L-_file_1_file_1_g5351"; +2L AUGUSTUS exon 232511 232524 . - . transcript_id "2L-_file_1_file_1_g5351.t2"; gene_id "2L-_file_1_file_1_g5351"; +2L AUGUSTUS exon 232511 232524 . - . transcript_id "2L-_file_1_file_1_g5351.t3"; gene_id "2L-_file_1_file_1_g5351"; +2L AUGUSTUS exon 232511 232524 . - . transcript_id "2L-_file_1_file_1_g5351.t4"; gene_id "2L-_file_1_file_1_g5351"; +2L AUGUSTUS start_codon 232522 232524 . - 0 transcript_id "2L-_file_1_file_1_g5351.t2"; gene_id "2L-_file_1_file_1_g5351"; +2L AUGUSTUS start_codon 232522 232524 . - 0 transcript_id "2L-_file_1_file_1_g5351.t3"; gene_id "2L-_file_1_file_1_g5351"; +2L AUGUSTUS start_codon 232522 232524 . - 0 transcript_id "2L-_file_1_file_1_g5351.t4"; gene_id "2L-_file_1_file_1_g5351"; +2L AUGUSTUS start_codon 232575 232577 . + 0 transcript_id "2L+_file_1_file_1_g5352.t1"; gene_id "2L+_file_1_file_1_g5352"; +2L AUGUSTUS CDS 232575 233154 0.91 + 0 transcript_id "2L+_file_1_file_1_g5352.t1"; gene_id "2L+_file_1_file_1_g5352"; +2L AUGUSTUS exon 232575 233154 . + . transcript_id "2L+_file_1_file_1_g5352.t1"; gene_id "2L+_file_1_file_1_g5352"; +2L AUGUSTUS intron 233155 233216 1 + . transcript_id "2L+_file_1_file_1_g5352.t1"; gene_id "2L+_file_1_file_1_g5352"; +2L AUGUSTUS CDS 233217 233965 1 + 2 transcript_id "2L+_file_1_file_1_g5352.t1"; gene_id "2L+_file_1_file_1_g5352"; +2L AUGUSTUS exon 233217 233965 . + . transcript_id "2L+_file_1_file_1_g5352.t1"; gene_id "2L+_file_1_file_1_g5352"; +2L AUGUSTUS stop_codon 233963 233965 . + 0 transcript_id "2L+_file_1_file_1_g5352.t1"; gene_id "2L+_file_1_file_1_g5352"; +2L AUGUSTUS stop_codon 233993 233995 . - 0 transcript_id "2L-_file_1_file_1_g5353.t1"; gene_id "2L-_file_1_file_1_g5353"; +2L AUGUSTUS CDS 233993 234174 1 - 2 transcript_id "2L-_file_1_file_1_g5353.t1"; gene_id "2L-_file_1_file_1_g5353"; +2L AUGUSTUS exon 233993 234174 . - . transcript_id "2L-_file_1_file_1_g5353.t1"; gene_id "2L-_file_1_file_1_g5353"; +2L AUGUSTUS intron 234175 234236 1 - . transcript_id "2L-_file_1_file_1_g5353.t1"; gene_id "2L-_file_1_file_1_g5353"; +2L AUGUSTUS CDS 234237 242143 0.92 - 1 transcript_id "2L-_file_1_file_1_g5353.t1"; gene_id "2L-_file_1_file_1_g5353"; +2L AUGUSTUS exon 234237 242143 . - . transcript_id "2L-_file_1_file_1_g5353.t1"; gene_id "2L-_file_1_file_1_g5353"; +2L AUGUSTUS intron 242144 242243 1 - . transcript_id "2L-_file_1_file_1_g5353.t1"; gene_id "2L-_file_1_file_1_g5353"; +2L AUGUSTUS CDS 242244 242266 0.95 - 0 transcript_id "2L-_file_1_file_1_g5353.t1"; gene_id "2L-_file_1_file_1_g5353"; +2L AUGUSTUS exon 242244 242266 . - . transcript_id "2L-_file_1_file_1_g5353.t1"; gene_id "2L-_file_1_file_1_g5353"; +2L AUGUSTUS start_codon 242264 242266 . - 0 transcript_id "2L-_file_1_file_1_g5353.t1"; gene_id "2L-_file_1_file_1_g5353"; +2L AUGUSTUS stop_codon 251194 251196 . - 0 transcript_id "2L-_file_1_file_1_g5354.t1"; gene_id "2L-_file_1_file_1_g5354"; +2L AUGUSTUS CDS 251194 251464 1 - 1 transcript_id "2L-_file_1_file_1_g5354.t1"; gene_id "2L-_file_1_file_1_g5354"; +2L AUGUSTUS exon 251194 251464 . - . transcript_id "2L-_file_1_file_1_g5354.t1"; gene_id "2L-_file_1_file_1_g5354"; +2L AUGUSTUS intron 251465 251526 1 - . transcript_id "2L-_file_1_file_1_g5354.t1"; gene_id "2L-_file_1_file_1_g5354"; +2L AUGUSTUS CDS 251527 251801 1 - 0 transcript_id "2L-_file_1_file_1_g5354.t1"; gene_id "2L-_file_1_file_1_g5354"; +2L AUGUSTUS exon 251527 251801 . - . transcript_id "2L-_file_1_file_1_g5354.t1"; gene_id "2L-_file_1_file_1_g5354"; +2L AUGUSTUS intron 251802 251855 1 - . transcript_id "2L-_file_1_file_1_g5354.t1"; gene_id "2L-_file_1_file_1_g5354"; +2L AUGUSTUS CDS 251856 251924 1 - 0 transcript_id "2L-_file_1_file_1_g5354.t1"; gene_id "2L-_file_1_file_1_g5354"; +2L AUGUSTUS exon 251856 251924 . - . transcript_id "2L-_file_1_file_1_g5354.t1"; gene_id "2L-_file_1_file_1_g5354"; +2L AUGUSTUS intron 251925 251978 1 - . transcript_id "2L-_file_1_file_1_g5354.t1"; gene_id "2L-_file_1_file_1_g5354"; +2L AUGUSTUS CDS 251979 252166 1 - 2 transcript_id "2L-_file_1_file_1_g5354.t1"; gene_id "2L-_file_1_file_1_g5354"; +2L AUGUSTUS exon 251979 252166 . - . transcript_id "2L-_file_1_file_1_g5354.t1"; gene_id "2L-_file_1_file_1_g5354"; +2L AUGUSTUS intron 252167 252226 1 - . transcript_id "2L-_file_1_file_1_g5354.t1"; gene_id "2L-_file_1_file_1_g5354"; +2L AUGUSTUS CDS 252227 252317 1 - 0 transcript_id "2L-_file_1_file_1_g5354.t1"; gene_id "2L-_file_1_file_1_g5354"; +2L AUGUSTUS exon 252227 252317 . - . transcript_id "2L-_file_1_file_1_g5354.t1"; gene_id "2L-_file_1_file_1_g5354"; +2L AUGUSTUS start_codon 252315 252317 . - 0 transcript_id "2L-_file_1_file_1_g5354.t1"; gene_id "2L-_file_1_file_1_g5354"; +2L AUGUSTUS stop_codon 252663 252665 . - 0 transcript_id "2L-_file_1_file_1_g5355.t1"; gene_id "2L-_file_1_file_1_g5355"; +2L AUGUSTUS CDS 252663 253145 1 - 0 transcript_id "2L-_file_1_file_1_g5355.t1"; gene_id "2L-_file_1_file_1_g5355"; +2L AUGUSTUS exon 252663 253145 . - . transcript_id "2L-_file_1_file_1_g5355.t1"; gene_id "2L-_file_1_file_1_g5355"; +2L AUGUSTUS intron 253146 253219 1 - . transcript_id "2L-_file_1_file_1_g5355.t1"; gene_id "2L-_file_1_file_1_g5355"; +2L AUGUSTUS CDS 253220 253385 1 - 1 transcript_id "2L-_file_1_file_1_g5355.t1"; gene_id "2L-_file_1_file_1_g5355"; +2L AUGUSTUS exon 253220 253385 . - . transcript_id "2L-_file_1_file_1_g5355.t1"; gene_id "2L-_file_1_file_1_g5355"; +2L AUGUSTUS intron 253386 253445 1 - . transcript_id "2L-_file_1_file_1_g5355.t1"; gene_id "2L-_file_1_file_1_g5355"; +2L AUGUSTUS CDS 253446 253890 1 - 2 transcript_id "2L-_file_1_file_1_g5355.t1"; gene_id "2L-_file_1_file_1_g5355"; +2L AUGUSTUS exon 253446 253890 . - . transcript_id "2L-_file_1_file_1_g5355.t1"; gene_id "2L-_file_1_file_1_g5355"; +2L AUGUSTUS intron 253891 253955 1 - . transcript_id "2L-_file_1_file_1_g5355.t1"; gene_id "2L-_file_1_file_1_g5355"; +2L AUGUSTUS CDS 253956 254379 0.89 - 0 transcript_id "2L-_file_1_file_1_g5355.t1"; gene_id "2L-_file_1_file_1_g5355"; +2L AUGUSTUS exon 253956 254379 . - . transcript_id "2L-_file_1_file_1_g5355.t1"; gene_id "2L-_file_1_file_1_g5355"; +2L AUGUSTUS start_codon 254377 254379 . - 0 transcript_id "2L-_file_1_file_1_g5355.t1"; gene_id "2L-_file_1_file_1_g5355"; +2L AUGUSTUS stop_codon 263782 263784 . - 0 transcript_id "2L-_file_1_file_1_g5356.t1"; gene_id "2L-_file_1_file_1_g5356"; +2L AUGUSTUS CDS 263782 266688 1 - 0 transcript_id "2L-_file_1_file_1_g5356.t1"; gene_id "2L-_file_1_file_1_g5356"; +2L AUGUSTUS exon 263782 266688 . - . transcript_id "2L-_file_1_file_1_g5356.t1"; gene_id "2L-_file_1_file_1_g5356"; +2L AUGUSTUS start_codon 266686 266688 . - 0 transcript_id "2L-_file_1_file_1_g5356.t1"; gene_id "2L-_file_1_file_1_g5356"; +2L AUGUSTUS start_codon 269192 269194 . + 0 transcript_id "2L+_file_1_file_1_g5357.t1"; gene_id "2L+_file_1_file_1_g5357"; +2L AUGUSTUS CDS 269192 269389 0.99 + 0 transcript_id "2L+_file_1_file_1_g5357.t1"; gene_id "2L+_file_1_file_1_g5357"; +2L AUGUSTUS exon 269192 269389 . + . transcript_id "2L+_file_1_file_1_g5357.t1"; gene_id "2L+_file_1_file_1_g5357"; +2L AUGUSTUS intron 269390 269457 1 + . transcript_id "2L+_file_1_file_1_g5357.t1"; gene_id "2L+_file_1_file_1_g5357"; +2L AUGUSTUS CDS 269458 270606 1 + 0 transcript_id "2L+_file_1_file_1_g5357.t1"; gene_id "2L+_file_1_file_1_g5357"; +2L AUGUSTUS exon 269458 270606 . + . transcript_id "2L+_file_1_file_1_g5357.t1"; gene_id "2L+_file_1_file_1_g5357"; +2L AUGUSTUS intron 270607 270660 1 + . transcript_id "2L+_file_1_file_1_g5357.t1"; gene_id "2L+_file_1_file_1_g5357"; +2L AUGUSTUS CDS 270661 271314 1 + 0 transcript_id "2L+_file_1_file_1_g5357.t1"; gene_id "2L+_file_1_file_1_g5357"; +2L AUGUSTUS exon 270661 271314 . + . transcript_id "2L+_file_1_file_1_g5357.t1"; gene_id "2L+_file_1_file_1_g5357"; +2L AUGUSTUS stop_codon 271312 271314 . + 0 transcript_id "2L+_file_1_file_1_g5357.t1"; gene_id "2L+_file_1_file_1_g5357"; +2L AUGUSTUS stop_codon 271967 271969 . - 0 transcript_id "2L-_file_1_file_1_g5358.t1"; gene_id "2L-_file_1_file_1_g5358"; +2L AUGUSTUS CDS 271967 272506 0.75 - 0 transcript_id "2L-_file_1_file_1_g5358.t1"; gene_id "2L-_file_1_file_1_g5358"; +2L AUGUSTUS exon 271967 272506 . - . transcript_id "2L-_file_1_file_1_g5358.t1"; gene_id "2L-_file_1_file_1_g5358"; +2L AUGUSTUS intron 272507 272554 1 - . transcript_id "2L-_file_1_file_1_g5358.t1"; gene_id "2L-_file_1_file_1_g5358"; +2L AUGUSTUS CDS 272555 273634 1 - 0 transcript_id "2L-_file_1_file_1_g5358.t1"; gene_id "2L-_file_1_file_1_g5358"; +2L AUGUSTUS exon 272555 273634 . - . transcript_id "2L-_file_1_file_1_g5358.t1"; gene_id "2L-_file_1_file_1_g5358"; +2L AUGUSTUS start_codon 273632 273634 . - 0 transcript_id "2L-_file_1_file_1_g5358.t1"; gene_id "2L-_file_1_file_1_g5358"; +2L AUGUSTUS start_codon 273986 273988 . + 0 transcript_id "2L+_file_1_file_1_g5359.t1"; gene_id "2L+_file_1_file_1_g5359"; +2L AUGUSTUS CDS 273986 274651 1 + 0 transcript_id "2L+_file_1_file_1_g5359.t1"; gene_id "2L+_file_1_file_1_g5359"; +2L AUGUSTUS exon 273986 274651 . + . transcript_id "2L+_file_1_file_1_g5359.t1"; gene_id "2L+_file_1_file_1_g5359"; +2L AUGUSTUS stop_codon 274649 274651 . + 0 transcript_id "2L+_file_1_file_1_g5359.t1"; gene_id "2L+_file_1_file_1_g5359"; +2L AUGUSTUS stop_codon 274947 274949 . - 0 transcript_id "2L-_file_1_file_1_g5360.t1"; gene_id "2L-_file_1_file_1_g5360"; +2L GeneMark.hmm stop_codon 274947 274949 . - 0 gene_id "2L-_file_1_file_2_2623_g"; transcript_id "2L-_file_1_file_2_2623_t"; count "file_1_file_2_1_1"; +2L AUGUSTUS CDS 274947 275251 1 - 2 transcript_id "2L-_file_1_file_1_g5360.t1"; gene_id "2L-_file_1_file_1_g5360"; +2L AUGUSTUS exon 274947 275251 . - . transcript_id "2L-_file_1_file_1_g5360.t1"; gene_id "2L-_file_1_file_1_g5360"; +2L GeneMark.hmm CDS 274947 275251 . - 2 gene_id "2L-_file_1_file_2_2623_g"; transcript_id "2L-_file_1_file_2_2623_t"; cds_type "file_1_file_2_Terminal"; count "file_1_file_2_4_4"; anchored "file_1_file_2_0_1"; +2L GeneMark.hmm exon 274947 275251 0 - . gene_id "2L-_file_1_file_2_2623_g"; transcript_id "2L-_file_1_file_2_2623_t"; cds_type "file_1_file_2_Terminal"; count "file_1_file_2_4_4"; anchored "file_1_file_2_0_1"; +2L AUGUSTUS intron 275252 275318 1 - . transcript_id "2L-_file_1_file_1_g5360.t1"; gene_id "2L-_file_1_file_1_g5360"; +2L AUGUSTUS CDS 275319 276497 1 - 2 transcript_id "2L-_file_1_file_1_g5360.t1"; gene_id "2L-_file_1_file_1_g5360"; +2L AUGUSTUS exon 275319 276497 . - . transcript_id "2L-_file_1_file_1_g5360.t1"; gene_id "2L-_file_1_file_1_g5360"; +2L GeneMark.hmm CDS 275319 276497 . - 2 gene_id "2L-_file_1_file_2_2623_g"; transcript_id "2L-_file_1_file_2_2623_t"; cds_type "file_1_file_2_Internal"; count "file_1_file_2_3_4"; anchored "file_1_file_2_1_1"; +2L GeneMark.hmm exon 275319 276497 0 - . gene_id "2L-_file_1_file_2_2623_g"; transcript_id "2L-_file_1_file_2_2623_t"; cds_type "file_1_file_2_Internal"; count "file_1_file_2_3_4"; anchored "file_1_file_2_1_1"; +2L AUGUSTUS intron 276498 276738 1 - . transcript_id "2L-_file_1_file_1_g5360.t1"; gene_id "2L-_file_1_file_1_g5360"; +2L AUGUSTUS CDS 276739 276903 1 - 2 transcript_id "2L-_file_1_file_1_g5360.t1"; gene_id "2L-_file_1_file_1_g5360"; +2L AUGUSTUS exon 276739 276903 . - . transcript_id "2L-_file_1_file_1_g5360.t1"; gene_id "2L-_file_1_file_1_g5360"; +2L GeneMark.hmm CDS 276739 276903 . - 2 gene_id "2L-_file_1_file_2_2623_g"; transcript_id "2L-_file_1_file_2_2623_t"; cds_type "file_1_file_2_Internal"; count "file_1_file_2_2_4"; anchored "file_1_file_2_1_1"; +2L GeneMark.hmm exon 276739 276903 0 - . gene_id "2L-_file_1_file_2_2623_g"; transcript_id "2L-_file_1_file_2_2623_t"; cds_type "file_1_file_2_Internal"; count "file_1_file_2_2_4"; anchored "file_1_file_2_1_1"; +2L AUGUSTUS intron 276904 276958 1 - . transcript_id "2L-_file_1_file_1_g5360.t1"; gene_id "2L-_file_1_file_1_g5360"; +2L AUGUSTUS CDS 276959 277142 1 - 0 transcript_id "2L-_file_1_file_1_g5360.t1"; gene_id "2L-_file_1_file_1_g5360"; +2L AUGUSTUS exon 276959 277142 . - . transcript_id "2L-_file_1_file_1_g5360.t1"; gene_id "2L-_file_1_file_1_g5360"; +2L GeneMark.hmm CDS 276974 277142 . - 0 gene_id "2L-_file_1_file_2_2623_g"; transcript_id "2L-_file_1_file_2_2623_t"; cds_type "file_1_file_2_Initial"; count "file_1_file_2_1_4"; anchored "file_1_file_2_1_0"; +2L GeneMark.hmm exon 276974 277142 0 - . gene_id "2L-_file_1_file_2_2623_g"; transcript_id "2L-_file_1_file_2_2623_t"; cds_type "file_1_file_2_Initial"; count "file_1_file_2_1_4"; anchored "file_1_file_2_1_0"; +2L AUGUSTUS start_codon 277140 277142 . - 0 transcript_id "2L-_file_1_file_1_g5360.t1"; gene_id "2L-_file_1_file_1_g5360"; +2L GeneMark.hmm start_codon 277140 277142 . - 0 gene_id "2L-_file_1_file_2_2623_g"; transcript_id "2L-_file_1_file_2_2623_t"; count "file_1_file_2_1_1"; +2L AUGUSTUS start_codon 277826 277828 . + 0 transcript_id "2L+_file_1_file_1_g5361.t1"; gene_id "2L+_file_1_file_1_g5361"; +2L AUGUSTUS CDS 277826 277863 0.79 + 0 transcript_id "2L+_file_1_file_1_g5361.t1"; gene_id "2L+_file_1_file_1_g5361"; +2L AUGUSTUS exon 277826 277863 . + . transcript_id "2L+_file_1_file_1_g5361.t1"; gene_id "2L+_file_1_file_1_g5361"; +2L AUGUSTUS intron 277864 277929 1 + . transcript_id "2L+_file_1_file_1_g5361.t1"; gene_id "2L+_file_1_file_1_g5361"; +2L AUGUSTUS CDS 277930 278323 1 + 1 transcript_id "2L+_file_1_file_1_g5361.t1"; gene_id "2L+_file_1_file_1_g5361"; +2L AUGUSTUS exon 277930 278323 . + . transcript_id "2L+_file_1_file_1_g5361.t1"; gene_id "2L+_file_1_file_1_g5361"; +2L AUGUSTUS intron 278324 278642 1 + . transcript_id "2L+_file_1_file_1_g5361.t1"; gene_id "2L+_file_1_file_1_g5361"; +2L AUGUSTUS CDS 278643 279124 1 + 0 transcript_id "2L+_file_1_file_1_g5361.t1"; gene_id "2L+_file_1_file_1_g5361"; +2L AUGUSTUS exon 278643 279124 . + . transcript_id "2L+_file_1_file_1_g5361.t1"; gene_id "2L+_file_1_file_1_g5361"; +2L AUGUSTUS intron 279125 279184 1 + . transcript_id "2L+_file_1_file_1_g5361.t1"; gene_id "2L+_file_1_file_1_g5361"; +2L AUGUSTUS CDS 279185 279805 1 + 1 transcript_id "2L+_file_1_file_1_g5361.t1"; gene_id "2L+_file_1_file_1_g5361"; +2L AUGUSTUS exon 279185 279805 . + . transcript_id "2L+_file_1_file_1_g5361.t1"; gene_id "2L+_file_1_file_1_g5361"; +2L AUGUSTUS intron 279806 279869 1 + . transcript_id "2L+_file_1_file_1_g5361.t1"; gene_id "2L+_file_1_file_1_g5361"; +2L AUGUSTUS CDS 279870 280040 1 + 1 transcript_id "2L+_file_1_file_1_g5361.t1"; gene_id "2L+_file_1_file_1_g5361"; +2L AUGUSTUS exon 279870 280040 . + . transcript_id "2L+_file_1_file_1_g5361.t1"; gene_id "2L+_file_1_file_1_g5361"; +2L AUGUSTUS intron 280041 280109 1 + . transcript_id "2L+_file_1_file_1_g5361.t1"; gene_id "2L+_file_1_file_1_g5361"; +2L AUGUSTUS CDS 280110 280422 1 + 1 transcript_id "2L+_file_1_file_1_g5361.t1"; gene_id "2L+_file_1_file_1_g5361"; +2L AUGUSTUS exon 280110 280422 . + . transcript_id "2L+_file_1_file_1_g5361.t1"; gene_id "2L+_file_1_file_1_g5361"; +2L AUGUSTUS intron 280423 280476 1 + . transcript_id "2L+_file_1_file_1_g5361.t1"; gene_id "2L+_file_1_file_1_g5361"; +2L AUGUSTUS CDS 280477 281514 0.99 + 0 transcript_id "2L+_file_1_file_1_g5361.t1"; gene_id "2L+_file_1_file_1_g5361"; +2L AUGUSTUS exon 280477 281514 . + . transcript_id "2L+_file_1_file_1_g5361.t1"; gene_id "2L+_file_1_file_1_g5361"; +2L AUGUSTUS stop_codon 281512 281514 . + 0 transcript_id "2L+_file_1_file_1_g5361.t1"; gene_id "2L+_file_1_file_1_g5361"; +2L AUGUSTUS stop_codon 282172 282174 . - 0 transcript_id "2L-_file_1_file_1_g5362.t1"; gene_id "2L-_file_1_file_1_g5362"; +2L AUGUSTUS CDS 282172 282505 1 - 1 transcript_id "2L-_file_1_file_1_g5362.t1"; gene_id "2L-_file_1_file_1_g5362"; +2L AUGUSTUS exon 282172 282505 . - . transcript_id "2L-_file_1_file_1_g5362.t1"; gene_id "2L-_file_1_file_1_g5362"; +2L AUGUSTUS intron 282506 282653 1 - . transcript_id "2L-_file_1_file_1_g5362.t1"; gene_id "2L-_file_1_file_1_g5362"; +2L AUGUSTUS CDS 282654 283147 0.97 - 0 transcript_id "2L-_file_1_file_1_g5362.t1"; gene_id "2L-_file_1_file_1_g5362"; +2L AUGUSTUS exon 282654 283147 . - . transcript_id "2L-_file_1_file_1_g5362.t1"; gene_id "2L-_file_1_file_1_g5362"; +2L AUGUSTUS start_codon 283145 283147 . - 0 transcript_id "2L-_file_1_file_1_g5362.t1"; gene_id "2L-_file_1_file_1_g5362"; +2L AUGUSTUS stop_codon 283886 283888 . - 0 transcript_id "2L-_file_1_file_1_g5363.t1"; gene_id "2L-_file_1_file_1_g5363"; +2L AUGUSTUS CDS 283886 284210 0.99 - 1 transcript_id "2L-_file_1_file_1_g5363.t1"; gene_id "2L-_file_1_file_1_g5363"; +2L AUGUSTUS exon 283886 284210 . - . transcript_id "2L-_file_1_file_1_g5363.t1"; gene_id "2L-_file_1_file_1_g5363"; +2L AUGUSTUS intron 284211 284747 1 - . transcript_id "2L-_file_1_file_1_g5363.t1"; gene_id "2L-_file_1_file_1_g5363"; +2L AUGUSTUS CDS 284748 284968 1 - 0 transcript_id "2L-_file_1_file_1_g5363.t1"; gene_id "2L-_file_1_file_1_g5363"; +2L AUGUSTUS exon 284748 284968 . - . transcript_id "2L-_file_1_file_1_g5363.t1"; gene_id "2L-_file_1_file_1_g5363"; +2L AUGUSTUS intron 284969 285432 1 - . transcript_id "2L-_file_1_file_1_g5363.t1"; gene_id "2L-_file_1_file_1_g5363"; +2L AUGUSTUS CDS 285433 285633 0.96 - 0 transcript_id "2L-_file_1_file_1_g5363.t1"; gene_id "2L-_file_1_file_1_g5363"; +2L AUGUSTUS exon 285433 285633 . - . transcript_id "2L-_file_1_file_1_g5363.t1"; gene_id "2L-_file_1_file_1_g5363"; +2L AUGUSTUS start_codon 285631 285633 . - 0 transcript_id "2L-_file_1_file_1_g5363.t1"; gene_id "2L-_file_1_file_1_g5363"; +2L AUGUSTUS stop_codon 286155 286157 . - 0 transcript_id "2L-_file_1_file_1_g5364.t1"; gene_id "2L-_file_1_file_1_g5364"; +2L AUGUSTUS CDS 286155 286178 0.66 - 0 transcript_id "2L-_file_1_file_1_g5364.t1"; gene_id "2L-_file_1_file_1_g5364"; +2L AUGUSTUS exon 286155 286178 . - . transcript_id "2L-_file_1_file_1_g5364.t1"; gene_id "2L-_file_1_file_1_g5364"; +2L AUGUSTUS intron 286179 286306 0.66 - . transcript_id "2L-_file_1_file_1_g5364.t1"; gene_id "2L-_file_1_file_1_g5364"; +2L AUGUSTUS CDS 286307 286498 0.71 - 0 transcript_id "2L-_file_1_file_1_g5364.t1"; gene_id "2L-_file_1_file_1_g5364"; +2L AUGUSTUS exon 286307 286498 . - . transcript_id "2L-_file_1_file_1_g5364.t1"; gene_id "2L-_file_1_file_1_g5364"; +2L AUGUSTUS start_codon 286496 286498 . - 0 transcript_id "2L-_file_1_file_1_g5364.t1"; gene_id "2L-_file_1_file_1_g5364"; +2L AUGUSTUS stop_codon 287402 287404 . - 0 transcript_id "2L-_file_1_file_1_g5365.t1"; gene_id "2L-_file_1_file_1_g5365"; +2L AUGUSTUS CDS 287402 288919 1 - 0 transcript_id "2L-_file_1_file_1_g5365.t1"; gene_id "2L-_file_1_file_1_g5365"; +2L AUGUSTUS exon 287402 288919 . - . transcript_id "2L-_file_1_file_1_g5365.t1"; gene_id "2L-_file_1_file_1_g5365"; +2L AUGUSTUS start_codon 288917 288919 . - 0 transcript_id "2L-_file_1_file_1_g5365.t1"; gene_id "2L-_file_1_file_1_g5365"; +2L AUGUSTUS stop_codon 290804 290806 . - 0 transcript_id "2L-_file_1_file_1_g5366.t1"; gene_id "2L-_file_1_file_1_g5366"; +2L AUGUSTUS CDS 290804 291010 0.96 - 0 transcript_id "2L-_file_1_file_1_g5366.t1"; gene_id "2L-_file_1_file_1_g5366"; +2L AUGUSTUS exon 290804 291010 . - . transcript_id "2L-_file_1_file_1_g5366.t1"; gene_id "2L-_file_1_file_1_g5366"; +2L AUGUSTUS start_codon 291008 291010 . - 0 transcript_id "2L-_file_1_file_1_g5366.t1"; gene_id "2L-_file_1_file_1_g5366"; +2L AUGUSTUS start_codon 292569 292571 . + 0 transcript_id "2L+_file_1_file_1_g5367.t1"; gene_id "2L+_file_1_file_1_g5367"; +2L AUGUSTUS CDS 292569 292660 1 + 0 transcript_id "2L+_file_1_file_1_g5367.t1"; gene_id "2L+_file_1_file_1_g5367"; +2L AUGUSTUS exon 292569 292660 . + . transcript_id "2L+_file_1_file_1_g5367.t1"; gene_id "2L+_file_1_file_1_g5367"; +2L AUGUSTUS intron 292661 292716 1 + . transcript_id "2L+_file_1_file_1_g5367.t1"; gene_id "2L+_file_1_file_1_g5367"; +2L AUGUSTUS CDS 292717 293002 1 + 1 transcript_id "2L+_file_1_file_1_g5367.t1"; gene_id "2L+_file_1_file_1_g5367"; +2L AUGUSTUS exon 292717 293002 . + . transcript_id "2L+_file_1_file_1_g5367.t1"; gene_id "2L+_file_1_file_1_g5367"; +2L AUGUSTUS stop_codon 293000 293002 . + 0 transcript_id "2L+_file_1_file_1_g5367.t1"; gene_id "2L+_file_1_file_1_g5367"; +2L AUGUSTUS stop_codon 293622 293624 . - 0 transcript_id "2L-_file_1_file_1_g5368.t1"; gene_id "2L-_file_1_file_1_g5368"; +2L AUGUSTUS CDS 293622 294372 1 - 1 transcript_id "2L-_file_1_file_1_g5368.t1"; gene_id "2L-_file_1_file_1_g5368"; +2L AUGUSTUS exon 293622 294372 . - . transcript_id "2L-_file_1_file_1_g5368.t1"; gene_id "2L-_file_1_file_1_g5368"; +2L AUGUSTUS intron 294373 294440 1 - . transcript_id "2L-_file_1_file_1_g5368.t1"; gene_id "2L-_file_1_file_1_g5368"; +2L AUGUSTUS CDS 294441 294484 1 - 0 transcript_id "2L-_file_1_file_1_g5368.t1"; gene_id "2L-_file_1_file_1_g5368"; +2L AUGUSTUS exon 294441 294484 . - . transcript_id "2L-_file_1_file_1_g5368.t1"; gene_id "2L-_file_1_file_1_g5368"; +2L AUGUSTUS start_codon 294482 294484 . - 0 transcript_id "2L-_file_1_file_1_g5368.t1"; gene_id "2L-_file_1_file_1_g5368"; diff --git a/example/tsebra_workdir/braker2.gtf b/example/tsebra_workdir/braker2.gtf new file mode 100644 index 0000000..3890c8d --- /dev/null +++ b/example/tsebra_workdir/braker2.gtf @@ -0,0 +1,760 @@ +2L AUGUSTUS stop_codon 21919 21921 . - 0 transcript_id "2L-_file_1_file_1_g2.t1"; gene_id "2L-_file_1_file_1_g2"; +2L AUGUSTUS CDS 21919 22687 1 - 1 transcript_id "2L-_file_1_file_1_g2.t1"; gene_id "2L-_file_1_file_1_g2"; +2L AUGUSTUS exon 21919 22687 . - . transcript_id "2L-_file_1_file_1_g2.t1"; gene_id "2L-_file_1_file_1_g2"; +2L AUGUSTUS intron 22688 22742 1 - . transcript_id "2L-_file_1_file_1_g2.t1"; gene_id "2L-_file_1_file_1_g2"; +2L AUGUSTUS CDS 22743 22935 1 - 2 transcript_id "2L-_file_1_file_1_g2.t1"; gene_id "2L-_file_1_file_1_g2"; +2L AUGUSTUS exon 22743 22935 . - . transcript_id "2L-_file_1_file_1_g2.t1"; gene_id "2L-_file_1_file_1_g2"; +2L AUGUSTUS intron 22936 22993 1 - . transcript_id "2L-_file_1_file_1_g2.t1"; gene_id "2L-_file_1_file_1_g2"; +2L AUGUSTUS CDS 22994 23089 0.99 - 2 transcript_id "2L-_file_1_file_1_g2.t1"; gene_id "2L-_file_1_file_1_g2"; +2L AUGUSTUS exon 22994 23089 . - . transcript_id "2L-_file_1_file_1_g2.t1"; gene_id "2L-_file_1_file_1_g2"; +2L AUGUSTUS intron 23090 23773 0.95 - . transcript_id "2L-_file_1_file_1_g2.t1"; gene_id "2L-_file_1_file_1_g2"; +2L AUGUSTUS CDS 23774 23873 1 - 0 transcript_id "2L-_file_1_file_1_g2.t1"; gene_id "2L-_file_1_file_1_g2"; +2L AUGUSTUS exon 23774 23873 . - . transcript_id "2L-_file_1_file_1_g2.t1"; gene_id "2L-_file_1_file_1_g2"; +2L AUGUSTUS intron 23874 23928 1 - . transcript_id "2L-_file_1_file_1_g2.t1"; gene_id "2L-_file_1_file_1_g2"; +2L AUGUSTUS CDS 23929 24210 1 - 0 transcript_id "2L-_file_1_file_1_g2.t1"; gene_id "2L-_file_1_file_1_g2"; +2L AUGUSTUS exon 23929 24210 . - . transcript_id "2L-_file_1_file_1_g2.t1"; gene_id "2L-_file_1_file_1_g2"; +2L AUGUSTUS intron 24211 24746 1 - . transcript_id "2L-_file_1_file_1_g2.t1"; gene_id "2L-_file_1_file_1_g2"; +2L AUGUSTUS CDS 24747 25151 0.99 - 0 transcript_id "2L-_file_1_file_1_g2.t1"; gene_id "2L-_file_1_file_1_g2"; +2L AUGUSTUS exon 24747 25151 . - . transcript_id "2L-_file_1_file_1_g2.t1"; gene_id "2L-_file_1_file_1_g2"; +2L AUGUSTUS start_codon 25149 25151 . - 0 transcript_id "2L-_file_1_file_1_g2.t1"; gene_id "2L-_file_1_file_1_g2"; +2L AUGUSTUS stop_codon 26521 26523 . - 0 transcript_id "2L-_file_1_file_1_g3.t1"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS stop_codon 26521 26523 . - 0 transcript_id "2L-_file_1_file_1_g3.t2"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS stop_codon 26521 26523 . - 0 transcript_id "2L-_file_1_file_1_g3.t3"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS stop_codon 26521 26523 . - 0 transcript_id "2L-_file_1_file_1_g3.t4"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS CDS 26521 26688 1 - 0 transcript_id "2L-_file_1_file_1_g3.t1"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS CDS 26521 26688 1 - 0 transcript_id "2L-_file_1_file_1_g3.t2"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS CDS 26521 26688 1 - 0 transcript_id "2L-_file_1_file_1_g3.t3"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS CDS 26521 26688 1 - 0 transcript_id "2L-_file_1_file_1_g3.t4"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS exon 26521 26688 . - . transcript_id "2L-_file_1_file_1_g3.t1"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS exon 26521 26688 . - . transcript_id "2L-_file_1_file_1_g3.t2"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS exon 26521 26688 . - . transcript_id "2L-_file_1_file_1_g3.t3"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS exon 26521 26688 . - . transcript_id "2L-_file_1_file_1_g3.t4"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS intron 26689 26765 1 - . transcript_id "2L-_file_1_file_1_g3.t1"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS intron 26689 26765 1 - . transcript_id "2L-_file_1_file_1_g3.t2"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS intron 26689 26765 1 - . transcript_id "2L-_file_1_file_1_g3.t3"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS intron 26689 26765 1 - . transcript_id "2L-_file_1_file_1_g3.t4"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS CDS 26766 26964 0.98 - 1 transcript_id "2L-_file_1_file_1_g3.t4"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS CDS 26766 26964 0.99 - 1 transcript_id "2L-_file_1_file_1_g3.t3"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS CDS 26766 26964 1 - 1 transcript_id "2L-_file_1_file_1_g3.t1"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS CDS 26766 26964 1 - 1 transcript_id "2L-_file_1_file_1_g3.t2"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS exon 26766 26964 . - . transcript_id "2L-_file_1_file_1_g3.t1"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS exon 26766 26964 . - . transcript_id "2L-_file_1_file_1_g3.t2"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS exon 26766 26964 . - . transcript_id "2L-_file_1_file_1_g3.t3"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS exon 26766 26964 . - . transcript_id "2L-_file_1_file_1_g3.t4"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS intron 26965 27052 1 - . transcript_id "2L-_file_1_file_1_g3.t1"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS intron 26965 27052 1 - . transcript_id "2L-_file_1_file_1_g3.t2"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS intron 26965 27052 1 - . transcript_id "2L-_file_1_file_1_g3.t3"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS intron 26965 27052 1 - . transcript_id "2L-_file_1_file_1_g3.t4"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS CDS 27053 27490 1 - 1 transcript_id "2L-_file_1_file_1_g3.t1"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS CDS 27053 27490 1 - 1 transcript_id "2L-_file_1_file_1_g3.t2"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS CDS 27053 27490 1 - 1 transcript_id "2L-_file_1_file_1_g3.t3"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS CDS 27053 27490 1 - 1 transcript_id "2L-_file_1_file_1_g3.t4"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS exon 27053 27490 . - . transcript_id "2L-_file_1_file_1_g3.t1"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS exon 27053 27490 . - . transcript_id "2L-_file_1_file_1_g3.t2"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS exon 27053 27490 . - . transcript_id "2L-_file_1_file_1_g3.t3"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS exon 27053 27490 . - . transcript_id "2L-_file_1_file_1_g3.t4"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS intron 27491 28014 1 - . transcript_id "2L-_file_1_file_1_g3.t1"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS intron 27491 28014 1 - . transcript_id "2L-_file_1_file_1_g3.t2"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS intron 27491 28014 1 - . transcript_id "2L-_file_1_file_1_g3.t4"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS intron 27491 28410 1 - . transcript_id "2L-_file_1_file_1_g3.t3"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS CDS 28015 28221 0.55 - 1 transcript_id "2L-_file_1_file_1_g3.t4"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS exon 28015 28221 . - . transcript_id "2L-_file_1_file_1_g3.t4"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS CDS 28015 28240 0.99 - 2 transcript_id "2L-_file_1_file_1_g3.t2"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS CDS 28015 28240 1 - 2 transcript_id "2L-_file_1_file_1_g3.t1"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS exon 28015 28240 . - . transcript_id "2L-_file_1_file_1_g3.t1"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS exon 28015 28240 . - . transcript_id "2L-_file_1_file_1_g3.t2"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS intron 28222 28410 0.55 - . transcript_id "2L-_file_1_file_1_g3.t4"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS intron 28241 28732 0.99 - . transcript_id "2L-_file_1_file_1_g3.t2"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS intron 28241 28732 1 - . transcript_id "2L-_file_1_file_1_g3.t1"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS CDS 28411 28639 0.57 - 2 transcript_id "2L-_file_1_file_1_g3.t4"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS CDS 28411 28639 1 - 2 transcript_id "2L-_file_1_file_1_g3.t3"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS exon 28411 28639 . - . transcript_id "2L-_file_1_file_1_g3.t3"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS exon 28411 28639 . - . transcript_id "2L-_file_1_file_1_g3.t4"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS intron 28640 28732 1 - . transcript_id "2L-_file_1_file_1_g3.t3"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS intron 28640 28732 1 - . transcript_id "2L-_file_1_file_1_g3.t4"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS CDS 28733 28926 0.99 - 1 transcript_id "2L-_file_1_file_1_g3.t4"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS CDS 28733 28926 1 - 1 transcript_id "2L-_file_1_file_1_g3.t1"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS CDS 28733 28926 1 - 1 transcript_id "2L-_file_1_file_1_g3.t2"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS CDS 28733 28926 1 - 1 transcript_id "2L-_file_1_file_1_g3.t3"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS exon 28733 28926 . - . transcript_id "2L-_file_1_file_1_g3.t1"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS exon 28733 28926 . - . transcript_id "2L-_file_1_file_1_g3.t2"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS exon 28733 28926 . - . transcript_id "2L-_file_1_file_1_g3.t3"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS exon 28733 28926 . - . transcript_id "2L-_file_1_file_1_g3.t4"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS intron 28927 28981 1 - . transcript_id "2L-_file_1_file_1_g3.t1"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS intron 28927 28981 1 - . transcript_id "2L-_file_1_file_1_g3.t2"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS intron 28927 28981 1 - . transcript_id "2L-_file_1_file_1_g3.t3"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS intron 28927 28981 1 - . transcript_id "2L-_file_1_file_1_g3.t4"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS CDS 28982 29068 1 - 1 transcript_id "2L-_file_1_file_1_g3.t1"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS CDS 28982 29068 1 - 1 transcript_id "2L-_file_1_file_1_g3.t2"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS CDS 28982 29068 1 - 1 transcript_id "2L-_file_1_file_1_g3.t3"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS CDS 28982 29068 1 - 1 transcript_id "2L-_file_1_file_1_g3.t4"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS exon 28982 29068 . - . transcript_id "2L-_file_1_file_1_g3.t1"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS exon 28982 29068 . - . transcript_id "2L-_file_1_file_1_g3.t2"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS exon 28982 29068 . - . transcript_id "2L-_file_1_file_1_g3.t3"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS exon 28982 29068 . - . transcript_id "2L-_file_1_file_1_g3.t4"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS intron 29069 30393 1 - . transcript_id "2L-_file_1_file_1_g3.t1"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS intron 29069 30393 1 - . transcript_id "2L-_file_1_file_1_g3.t2"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS intron 29069 30393 1 - . transcript_id "2L-_file_1_file_1_g3.t3"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS intron 29069 30393 1 - . transcript_id "2L-_file_1_file_1_g3.t4"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS CDS 30394 32043 0.31 - 1 transcript_id "2L-_file_1_file_1_g3.t3"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS CDS 30394 32043 0.3 - 1 transcript_id "2L-_file_1_file_1_g3.t1"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS CDS 30394 32043 0.33 - 1 transcript_id "2L-_file_1_file_1_g3.t2"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS CDS 30394 32043 0.36 - 1 transcript_id "2L-_file_1_file_1_g3.t4"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS exon 30394 32043 . - . transcript_id "2L-_file_1_file_1_g3.t1"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS exon 30394 32043 . - . transcript_id "2L-_file_1_file_1_g3.t2"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS exon 30394 32043 . - . transcript_id "2L-_file_1_file_1_g3.t3"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS exon 30394 32043 . - . transcript_id "2L-_file_1_file_1_g3.t4"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS intron 32044 32625 0.45 - . transcript_id "2L-_file_1_file_1_g3.t1"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS intron 32044 32625 0.46 - . transcript_id "2L-_file_1_file_1_g3.t4"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS intron 32044 32625 0.47 - . transcript_id "2L-_file_1_file_1_g3.t3"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS intron 32044 32625 0.51 - . transcript_id "2L-_file_1_file_1_g3.t2"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS CDS 32626 33270 0.51 - 1 transcript_id "2L-_file_1_file_1_g3.t1"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS CDS 32626 33270 0.51 - 1 transcript_id "2L-_file_1_file_1_g3.t4"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS CDS 32626 33270 0.55 - 1 transcript_id "2L-_file_1_file_1_g3.t3"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS CDS 32626 33270 0.57 - 1 transcript_id "2L-_file_1_file_1_g3.t2"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS exon 32626 33270 . - . transcript_id "2L-_file_1_file_1_g3.t1"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS exon 32626 33270 . - . transcript_id "2L-_file_1_file_1_g3.t2"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS exon 32626 33270 . - . transcript_id "2L-_file_1_file_1_g3.t3"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS exon 32626 33270 . - . transcript_id "2L-_file_1_file_1_g3.t4"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS intron 33271 33844 1 - . transcript_id "2L-_file_1_file_1_g3.t1"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS intron 33271 33844 1 - . transcript_id "2L-_file_1_file_1_g3.t2"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS intron 33271 33844 1 - . transcript_id "2L-_file_1_file_1_g3.t3"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS intron 33271 33844 1 - . transcript_id "2L-_file_1_file_1_g3.t4"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS CDS 33845 34288 1 - 1 transcript_id "2L-_file_1_file_1_g3.t1"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS CDS 33845 34288 1 - 1 transcript_id "2L-_file_1_file_1_g3.t2"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS CDS 33845 34288 1 - 1 transcript_id "2L-_file_1_file_1_g3.t3"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS CDS 33845 34288 1 - 1 transcript_id "2L-_file_1_file_1_g3.t4"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS exon 33845 34288 . - . transcript_id "2L-_file_1_file_1_g3.t1"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS exon 33845 34288 . - . transcript_id "2L-_file_1_file_1_g3.t2"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS exon 33845 34288 . - . transcript_id "2L-_file_1_file_1_g3.t3"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS exon 33845 34288 . - . transcript_id "2L-_file_1_file_1_g3.t4"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS intron 34289 34557 1 - . transcript_id "2L-_file_1_file_1_g3.t1"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS intron 34289 34557 1 - . transcript_id "2L-_file_1_file_1_g3.t2"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS intron 34289 34557 1 - . transcript_id "2L-_file_1_file_1_g3.t3"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS intron 34289 34557 1 - . transcript_id "2L-_file_1_file_1_g3.t4"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS CDS 34558 34604 1 - 0 transcript_id "2L-_file_1_file_1_g3.t1"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS CDS 34558 34604 1 - 0 transcript_id "2L-_file_1_file_1_g3.t2"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS CDS 34558 34604 1 - 0 transcript_id "2L-_file_1_file_1_g3.t3"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS CDS 34558 34604 1 - 0 transcript_id "2L-_file_1_file_1_g3.t4"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS exon 34558 34604 . - . transcript_id "2L-_file_1_file_1_g3.t1"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS exon 34558 34604 . - . transcript_id "2L-_file_1_file_1_g3.t2"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS exon 34558 34604 . - . transcript_id "2L-_file_1_file_1_g3.t3"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS exon 34558 34604 . - . transcript_id "2L-_file_1_file_1_g3.t4"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS intron 34605 34719 1 - . transcript_id "2L-_file_1_file_1_g3.t1"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS intron 34605 34719 1 - . transcript_id "2L-_file_1_file_1_g3.t2"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS intron 34605 34719 1 - . transcript_id "2L-_file_1_file_1_g3.t3"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS intron 34605 34719 1 - . transcript_id "2L-_file_1_file_1_g3.t4"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS CDS 34720 34912 1 - 1 transcript_id "2L-_file_1_file_1_g3.t2"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS exon 34720 34912 . - . transcript_id "2L-_file_1_file_1_g3.t2"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS CDS 34720 35212 1 - 1 transcript_id "2L-_file_1_file_1_g3.t1"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS CDS 34720 35212 1 - 1 transcript_id "2L-_file_1_file_1_g3.t3"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS CDS 34720 35212 1 - 1 transcript_id "2L-_file_1_file_1_g3.t4"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS exon 34720 35212 . - . transcript_id "2L-_file_1_file_1_g3.t1"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS exon 34720 35212 . - . transcript_id "2L-_file_1_file_1_g3.t3"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS exon 34720 35212 . - . transcript_id "2L-_file_1_file_1_g3.t4"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS intron 34913 35745 1 - . transcript_id "2L-_file_1_file_1_g3.t2"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS intron 35213 35745 1 - . transcript_id "2L-_file_1_file_1_g3.t1"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS intron 35213 35745 1 - . transcript_id "2L-_file_1_file_1_g3.t3"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS intron 35213 35745 1 - . transcript_id "2L-_file_1_file_1_g3.t4"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS CDS 35746 38298 0.91 - 1 transcript_id "2L-_file_1_file_1_g3.t1"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS CDS 35746 38298 0.92 - 1 transcript_id "2L-_file_1_file_1_g3.t4"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS CDS 35746 38298 0.95 - 1 transcript_id "2L-_file_1_file_1_g3.t2"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS CDS 35746 38298 0.95 - 1 transcript_id "2L-_file_1_file_1_g3.t3"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS exon 35746 38298 . - . transcript_id "2L-_file_1_file_1_g3.t1"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS exon 35746 38298 . - . transcript_id "2L-_file_1_file_1_g3.t2"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS exon 35746 38298 . - . transcript_id "2L-_file_1_file_1_g3.t3"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS exon 35746 38298 . - . transcript_id "2L-_file_1_file_1_g3.t4"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS intron 38299 38534 1 - . transcript_id "2L-_file_1_file_1_g3.t1"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS intron 38299 38534 1 - . transcript_id "2L-_file_1_file_1_g3.t2"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS intron 38299 38534 1 - . transcript_id "2L-_file_1_file_1_g3.t3"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS intron 38299 38534 1 - . transcript_id "2L-_file_1_file_1_g3.t4"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS CDS 38535 38731 1 - 0 transcript_id "2L-_file_1_file_1_g3.t1"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS CDS 38535 38731 1 - 0 transcript_id "2L-_file_1_file_1_g3.t2"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS CDS 38535 38731 1 - 0 transcript_id "2L-_file_1_file_1_g3.t3"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS CDS 38535 38731 1 - 0 transcript_id "2L-_file_1_file_1_g3.t4"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS exon 38535 38731 . - . transcript_id "2L-_file_1_file_1_g3.t1"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS exon 38535 38731 . - . transcript_id "2L-_file_1_file_1_g3.t2"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS exon 38535 38731 . - . transcript_id "2L-_file_1_file_1_g3.t3"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS exon 38535 38731 . - . transcript_id "2L-_file_1_file_1_g3.t4"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS intron 38732 39300 1 - . transcript_id "2L-_file_1_file_1_g3.t1"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS intron 38732 39300 1 - . transcript_id "2L-_file_1_file_1_g3.t2"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS intron 38732 39300 1 - . transcript_id "2L-_file_1_file_1_g3.t3"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS intron 38732 39300 1 - . transcript_id "2L-_file_1_file_1_g3.t4"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS CDS 39301 39857 0.94 - 2 transcript_id "2L-_file_1_file_1_g3.t3"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS CDS 39301 39857 0.96 - 2 transcript_id "2L-_file_1_file_1_g3.t4"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS CDS 39301 39857 0.98 - 2 transcript_id "2L-_file_1_file_1_g3.t2"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS CDS 39301 39857 1 - 2 transcript_id "2L-_file_1_file_1_g3.t1"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS exon 39301 39857 . - . transcript_id "2L-_file_1_file_1_g3.t1"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS exon 39301 39857 . - . transcript_id "2L-_file_1_file_1_g3.t2"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS exon 39301 39857 . - . transcript_id "2L-_file_1_file_1_g3.t3"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS exon 39301 39857 . - . transcript_id "2L-_file_1_file_1_g3.t4"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS intron 39858 40756 0.52 - . transcript_id "2L-_file_1_file_1_g3.t4"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS intron 39858 40756 0.59 - . transcript_id "2L-_file_1_file_1_g3.t3"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS intron 39858 40756 0.62 - . transcript_id "2L-_file_1_file_1_g3.t2"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS intron 39858 40756 0.63 - . transcript_id "2L-_file_1_file_1_g3.t1"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS CDS 40757 40784 0.55 - 0 transcript_id "2L-_file_1_file_1_g3.t4"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS CDS 40757 40784 0.63 - 0 transcript_id "2L-_file_1_file_1_g3.t1"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS CDS 40757 40784 0.63 - 0 transcript_id "2L-_file_1_file_1_g3.t2"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS CDS 40757 40784 0.64 - 0 transcript_id "2L-_file_1_file_1_g3.t3"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS exon 40757 40784 . - . transcript_id "2L-_file_1_file_1_g3.t1"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS exon 40757 40784 . - . transcript_id "2L-_file_1_file_1_g3.t2"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS exon 40757 40784 . - . transcript_id "2L-_file_1_file_1_g3.t3"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS exon 40757 40784 . - . transcript_id "2L-_file_1_file_1_g3.t4"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS start_codon 40782 40784 . - 0 transcript_id "2L-_file_1_file_1_g3.t1"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS start_codon 40782 40784 . - 0 transcript_id "2L-_file_1_file_1_g3.t2"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS start_codon 40782 40784 . - 0 transcript_id "2L-_file_1_file_1_g3.t3"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS start_codon 40782 40784 . - 0 transcript_id "2L-_file_1_file_1_g3.t4"; gene_id "2L-_file_1_file_1_g3"; +2L AUGUSTUS start_codon 67625 67627 . + 0 transcript_id "2L+_file_1_file_1_g4.t1"; gene_id "2L+_file_1_file_1_g4"; +2L AUGUSTUS CDS 67625 67762 1 + 0 transcript_id "2L+_file_1_file_1_g4.t1"; gene_id "2L+_file_1_file_1_g4"; +2L AUGUSTUS exon 67625 67762 . + . transcript_id "2L+_file_1_file_1_g4.t1"; gene_id "2L+_file_1_file_1_g4"; +2L AUGUSTUS intron 67763 67891 1 + . transcript_id "2L+_file_1_file_1_g4.t1"; gene_id "2L+_file_1_file_1_g4"; +2L AUGUSTUS CDS 67892 68023 1 + 0 transcript_id "2L+_file_1_file_1_g4.t1"; gene_id "2L+_file_1_file_1_g4"; +2L AUGUSTUS exon 67892 68023 . + . transcript_id "2L+_file_1_file_1_g4.t1"; gene_id "2L+_file_1_file_1_g4"; +2L AUGUSTUS intron 68024 68084 1 + . transcript_id "2L+_file_1_file_1_g4.t1"; gene_id "2L+_file_1_file_1_g4"; +2L AUGUSTUS CDS 68085 70549 0.91 + 0 transcript_id "2L+_file_1_file_1_g4.t1"; gene_id "2L+_file_1_file_1_g4"; +2L AUGUSTUS exon 68085 70549 . + . transcript_id "2L+_file_1_file_1_g4.t1"; gene_id "2L+_file_1_file_1_g4"; +2L AUGUSTUS intron 70550 70606 1 + . transcript_id "2L+_file_1_file_1_g4.t1"; gene_id "2L+_file_1_file_1_g4"; +2L AUGUSTUS CDS 70607 70895 1 + 1 transcript_id "2L+_file_1_file_1_g4.t1"; gene_id "2L+_file_1_file_1_g4"; +2L AUGUSTUS exon 70607 70895 . + . transcript_id "2L+_file_1_file_1_g4.t1"; gene_id "2L+_file_1_file_1_g4"; +2L AUGUSTUS stop_codon 70893 70895 . + 0 transcript_id "2L+_file_1_file_1_g4.t1"; gene_id "2L+_file_1_file_1_g4"; +2L AUGUSTUS start_codon 72603 72605 . + 0 transcript_id "2L+_file_1_file_1_g5.t2"; gene_id "2L+_file_1_file_1_g5"; +2L AUGUSTUS CDS 72603 72977 0.96 + 0 transcript_id "2L+_file_1_file_1_g5.t2"; gene_id "2L+_file_1_file_1_g5"; +2L AUGUSTUS exon 72603 72977 . + . transcript_id "2L+_file_1_file_1_g5.t2"; gene_id "2L+_file_1_file_1_g5"; +2L AUGUSTUS intron 72978 74902 0.96 + . transcript_id "2L+_file_1_file_1_g5.t2"; gene_id "2L+_file_1_file_1_g5"; +2L AUGUSTUS start_codon 73570 73572 . + 0 transcript_id "2L+_file_1_file_1_g5.t1"; gene_id "2L+_file_1_file_1_g5"; +2L AUGUSTUS CDS 73570 73692 0.87 + 0 transcript_id "2L+_file_1_file_1_g5.t1"; gene_id "2L+_file_1_file_1_g5"; +2L AUGUSTUS exon 73570 73692 . + . transcript_id "2L+_file_1_file_1_g5.t1"; gene_id "2L+_file_1_file_1_g5"; +2L AUGUSTUS intron 73693 74902 1 + . transcript_id "2L+_file_1_file_1_g5.t1"; gene_id "2L+_file_1_file_1_g5"; +2L AUGUSTUS CDS 74903 75018 1 + 0 transcript_id "2L+_file_1_file_1_g5.t1"; gene_id "2L+_file_1_file_1_g5"; +2L AUGUSTUS CDS 74903 75018 1 + 0 transcript_id "2L+_file_1_file_1_g5.t2"; gene_id "2L+_file_1_file_1_g5"; +2L AUGUSTUS exon 74903 75018 . + . transcript_id "2L+_file_1_file_1_g5.t1"; gene_id "2L+_file_1_file_1_g5"; +2L AUGUSTUS exon 74903 75018 . + . transcript_id "2L+_file_1_file_1_g5.t2"; gene_id "2L+_file_1_file_1_g5"; +2L AUGUSTUS intron 75019 75077 1 + . transcript_id "2L+_file_1_file_1_g5.t1"; gene_id "2L+_file_1_file_1_g5"; +2L AUGUSTUS intron 75019 75077 1 + . transcript_id "2L+_file_1_file_1_g5.t2"; gene_id "2L+_file_1_file_1_g5"; +2L AUGUSTUS CDS 75078 75366 0.76 + 1 transcript_id "2L+_file_1_file_1_g5.t1"; gene_id "2L+_file_1_file_1_g5"; +2L AUGUSTUS CDS 75078 75366 0.98 + 1 transcript_id "2L+_file_1_file_1_g5.t2"; gene_id "2L+_file_1_file_1_g5"; +2L AUGUSTUS exon 75078 75366 . + . transcript_id "2L+_file_1_file_1_g5.t1"; gene_id "2L+_file_1_file_1_g5"; +2L AUGUSTUS exon 75078 75366 . + . transcript_id "2L+_file_1_file_1_g5.t2"; gene_id "2L+_file_1_file_1_g5"; +2L AUGUSTUS intron 75367 75963 0.54 + . transcript_id "2L+_file_1_file_1_g5.t1"; gene_id "2L+_file_1_file_1_g5"; +2L AUGUSTUS intron 75367 75963 0.69 + . transcript_id "2L+_file_1_file_1_g5.t2"; gene_id "2L+_file_1_file_1_g5"; +2L AUGUSTUS CDS 75964 76098 0.56 + 0 transcript_id "2L+_file_1_file_1_g5.t1"; gene_id "2L+_file_1_file_1_g5"; +2L AUGUSTUS CDS 75964 76098 0.71 + 0 transcript_id "2L+_file_1_file_1_g5.t2"; gene_id "2L+_file_1_file_1_g5"; +2L AUGUSTUS exon 75964 76098 . + . transcript_id "2L+_file_1_file_1_g5.t1"; gene_id "2L+_file_1_file_1_g5"; +2L AUGUSTUS exon 75964 76098 . + . transcript_id "2L+_file_1_file_1_g5.t2"; gene_id "2L+_file_1_file_1_g5"; +2L AUGUSTUS stop_codon 76096 76098 . + 0 transcript_id "2L+_file_1_file_1_g5.t1"; gene_id "2L+_file_1_file_1_g5"; +2L AUGUSTUS stop_codon 76096 76098 . + 0 transcript_id "2L+_file_1_file_1_g5.t2"; gene_id "2L+_file_1_file_1_g5"; +2L AUGUSTUS stop_codon 83268 83270 . - 0 transcript_id "2L-_file_1_file_1_g6.t1"; gene_id "2L-_file_1_file_1_g6"; +2L GeneMark.hmm stop_codon 83268 83270 . - 0 gene_id "2L-_file_1_file_2_3367_g"; transcript_id "2L-_file_1_file_2_3367_t"; count "file_1_file_2_1_1"; +2L AUGUSTUS CDS 83268 84277 1 - 2 transcript_id "2L-_file_1_file_1_g6.t1"; gene_id "2L-_file_1_file_1_g6"; +2L AUGUSTUS exon 83268 84277 . - . transcript_id "2L-_file_1_file_1_g6.t1"; gene_id "2L-_file_1_file_1_g6"; +2L GeneMark.hmm CDS 83268 84277 . - 2 gene_id "2L-_file_1_file_2_3367_g"; transcript_id "2L-_file_1_file_2_3367_t"; evidence "file_1_file_2_1_1"; cds_type "file_1_file_2_Terminal"; count "file_1_file_2_2_2"; anchored "file_1_file_2_1_1"; +2L GeneMark.hmm exon 83268 84277 0 - . gene_id "2L-_file_1_file_2_3367_g"; transcript_id "2L-_file_1_file_2_3367_t"; evidence "file_1_file_2_1_1"; cds_type "file_1_file_2_Terminal"; count "file_1_file_2_2_2"; anchored "file_1_file_2_1_1"; +2L AUGUSTUS intron 84278 87019 1 - . transcript_id "2L-_file_1_file_1_g6.t1"; gene_id "2L-_file_1_file_1_g6"; +2L GeneMark.hmm CDS 87020 87026 . - 0 gene_id "2L-_file_1_file_2_3367_g"; transcript_id "2L-_file_1_file_2_3367_t"; evidence "file_1_file_2_1_0"; cds_type "file_1_file_2_Initial"; count "file_1_file_2_1_2"; anchored "file_1_file_2_1_0"; +2L GeneMark.hmm exon 87020 87026 0 - . gene_id "2L-_file_1_file_2_3367_g"; transcript_id "2L-_file_1_file_2_3367_t"; evidence "file_1_file_2_1_0"; cds_type "file_1_file_2_Initial"; count "file_1_file_2_1_2"; anchored "file_1_file_2_1_0"; +2L AUGUSTUS CDS 87020 87107 0.9 - 0 transcript_id "2L-_file_1_file_1_g6.t1"; gene_id "2L-_file_1_file_1_g6"; +2L AUGUSTUS exon 87020 87107 . - . transcript_id "2L-_file_1_file_1_g6.t1"; gene_id "2L-_file_1_file_1_g6"; +2L GeneMark.hmm start_codon 87024 87026 . - 0 gene_id "2L-_file_1_file_2_3367_g"; transcript_id "2L-_file_1_file_2_3367_t"; count "file_1_file_2_1_1"; +2L AUGUSTUS start_codon 87105 87107 . - 0 transcript_id "2L-_file_1_file_1_g6.t1"; gene_id "2L-_file_1_file_1_g6"; +2L AUGUSTUS start_codon 102459 102461 . + 0 transcript_id "2L+_file_1_file_1_g7.t1"; gene_id "2L+_file_1_file_1_g7"; +2L AUGUSTUS CDS 102459 102906 1 + 0 transcript_id "2L+_file_1_file_1_g7.t1"; gene_id "2L+_file_1_file_1_g7"; +2L AUGUSTUS exon 102459 102906 . + . transcript_id "2L+_file_1_file_1_g7.t1"; gene_id "2L+_file_1_file_1_g7"; +2L AUGUSTUS intron 102907 103005 1 + . transcript_id "2L+_file_1_file_1_g7.t1"; gene_id "2L+_file_1_file_1_g7"; +2L AUGUSTUS CDS 103006 103434 1 + 2 transcript_id "2L+_file_1_file_1_g7.t1"; gene_id "2L+_file_1_file_1_g7"; +2L AUGUSTUS exon 103006 103434 . + . transcript_id "2L+_file_1_file_1_g7.t1"; gene_id "2L+_file_1_file_1_g7"; +2L AUGUSTUS intron 103435 103515 1 + . transcript_id "2L+_file_1_file_1_g7.t1"; gene_id "2L+_file_1_file_1_g7"; +2L AUGUSTUS CDS 103516 103763 1 + 2 transcript_id "2L+_file_1_file_1_g7.t1"; gene_id "2L+_file_1_file_1_g7"; +2L AUGUSTUS exon 103516 103763 . + . transcript_id "2L+_file_1_file_1_g7.t1"; gene_id "2L+_file_1_file_1_g7"; +2L AUGUSTUS stop_codon 103761 103763 . + 0 transcript_id "2L+_file_1_file_1_g7.t1"; gene_id "2L+_file_1_file_1_g7"; +2L AUGUSTUS stop_codon 104473 104475 . - 0 transcript_id "2L-_file_1_file_1_g8.t1"; gene_id "2L-_file_1_file_1_g8"; +2L AUGUSTUS CDS 104473 104947 1 - 1 transcript_id "2L-_file_1_file_1_g8.t1"; gene_id "2L-_file_1_file_1_g8"; +2L AUGUSTUS exon 104473 104947 . - . transcript_id "2L-_file_1_file_1_g8.t1"; gene_id "2L-_file_1_file_1_g8"; +2L AUGUSTUS intron 104948 105004 1 - . transcript_id "2L-_file_1_file_1_g8.t1"; gene_id "2L-_file_1_file_1_g8"; +2L AUGUSTUS CDS 105005 105336 1 - 0 transcript_id "2L-_file_1_file_1_g8.t1"; gene_id "2L-_file_1_file_1_g8"; +2L AUGUSTUS exon 105005 105336 . - . transcript_id "2L-_file_1_file_1_g8.t1"; gene_id "2L-_file_1_file_1_g8"; +2L AUGUSTUS intron 105337 105390 1 - . transcript_id "2L-_file_1_file_1_g8.t1"; gene_id "2L-_file_1_file_1_g8"; +2L AUGUSTUS CDS 105391 105455 1 - 2 transcript_id "2L-_file_1_file_1_g8.t1"; gene_id "2L-_file_1_file_1_g8"; +2L AUGUSTUS exon 105391 105455 . - . transcript_id "2L-_file_1_file_1_g8.t1"; gene_id "2L-_file_1_file_1_g8"; +2L AUGUSTUS intron 105456 105511 1 - . transcript_id "2L-_file_1_file_1_g8.t1"; gene_id "2L-_file_1_file_1_g8"; +2L AUGUSTUS CDS 105512 105915 1 - 1 transcript_id "2L-_file_1_file_1_g8.t1"; gene_id "2L-_file_1_file_1_g8"; +2L AUGUSTUS exon 105512 105915 . - . transcript_id "2L-_file_1_file_1_g8.t1"; gene_id "2L-_file_1_file_1_g8"; +2L AUGUSTUS intron 105916 105968 1 - . transcript_id "2L-_file_1_file_1_g8.t1"; gene_id "2L-_file_1_file_1_g8"; +2L AUGUSTUS CDS 105969 106642 1 - 0 transcript_id "2L-_file_1_file_1_g8.t1"; gene_id "2L-_file_1_file_1_g8"; +2L AUGUSTUS exon 105969 106642 . - . transcript_id "2L-_file_1_file_1_g8.t1"; gene_id "2L-_file_1_file_1_g8"; +2L AUGUSTUS start_codon 106640 106642 . - 0 transcript_id "2L-_file_1_file_1_g8.t1"; gene_id "2L-_file_1_file_1_g8"; +2L AUGUSTUS start_codon 108686 108688 . + 0 transcript_id "2L+_file_1_file_1_g9.t1"; gene_id "2L+_file_1_file_1_g9"; +2L AUGUSTUS CDS 108686 108809 1 + 0 transcript_id "2L+_file_1_file_1_g9.t1"; gene_id "2L+_file_1_file_1_g9"; +2L AUGUSTUS exon 108686 108809 . + . transcript_id "2L+_file_1_file_1_g9.t1"; gene_id "2L+_file_1_file_1_g9"; +2L AUGUSTUS intron 108810 110405 1 + . transcript_id "2L+_file_1_file_1_g9.t1"; gene_id "2L+_file_1_file_1_g9"; +2L AUGUSTUS CDS 110406 110483 1 + 2 transcript_id "2L+_file_1_file_1_g9.t1"; gene_id "2L+_file_1_file_1_g9"; +2L AUGUSTUS exon 110406 110483 . + . transcript_id "2L+_file_1_file_1_g9.t1"; gene_id "2L+_file_1_file_1_g9"; +2L AUGUSTUS intron 110484 110754 1 + . transcript_id "2L+_file_1_file_1_g9.t1"; gene_id "2L+_file_1_file_1_g9"; +2L AUGUSTUS CDS 110755 110877 1 + 2 transcript_id "2L+_file_1_file_1_g9.t1"; gene_id "2L+_file_1_file_1_g9"; +2L AUGUSTUS exon 110755 110877 . + . transcript_id "2L+_file_1_file_1_g9.t1"; gene_id "2L+_file_1_file_1_g9"; +2L AUGUSTUS intron 110878 111004 1 + . transcript_id "2L+_file_1_file_1_g9.t1"; gene_id "2L+_file_1_file_1_g9"; +2L AUGUSTUS CDS 111005 111117 1 + 2 transcript_id "2L+_file_1_file_1_g9.t1"; gene_id "2L+_file_1_file_1_g9"; +2L AUGUSTUS exon 111005 111117 . + . transcript_id "2L+_file_1_file_1_g9.t1"; gene_id "2L+_file_1_file_1_g9"; +2L AUGUSTUS intron 111118 112689 1 + . transcript_id "2L+_file_1_file_1_g9.t1"; gene_id "2L+_file_1_file_1_g9"; +2L AUGUSTUS CDS 112690 113369 1 + 0 transcript_id "2L+_file_1_file_1_g9.t1"; gene_id "2L+_file_1_file_1_g9"; +2L AUGUSTUS exon 112690 113369 . + . transcript_id "2L+_file_1_file_1_g9.t1"; gene_id "2L+_file_1_file_1_g9"; +2L AUGUSTUS intron 113370 113433 1 + . transcript_id "2L+_file_1_file_1_g9.t1"; gene_id "2L+_file_1_file_1_g9"; +2L AUGUSTUS CDS 113434 113542 1 + 1 transcript_id "2L+_file_1_file_1_g9.t1"; gene_id "2L+_file_1_file_1_g9"; +2L AUGUSTUS exon 113434 113542 . + . transcript_id "2L+_file_1_file_1_g9.t1"; gene_id "2L+_file_1_file_1_g9"; +2L AUGUSTUS stop_codon 113540 113542 . + 0 transcript_id "2L+_file_1_file_1_g9.t1"; gene_id "2L+_file_1_file_1_g9"; +2L AUGUSTUS stop_codon 115713 115715 . - 0 transcript_id "2L-_file_1_file_1_g10.t1"; gene_id "2L-_file_1_file_1_g10"; +2L AUGUSTUS stop_codon 115713 115715 . - 0 transcript_id "2L-_file_1_file_1_g10.t2"; gene_id "2L-_file_1_file_1_g10"; +2L AUGUSTUS CDS 115713 116117 0.63 - 0 transcript_id "2L-_file_1_file_1_g10.t2"; gene_id "2L-_file_1_file_1_g10"; +2L AUGUSTUS exon 115713 116117 . - . transcript_id "2L-_file_1_file_1_g10.t2"; gene_id "2L-_file_1_file_1_g10"; +2L AUGUSTUS CDS 115713 116150 1 - 0 transcript_id "2L-_file_1_file_1_g10.t1"; gene_id "2L-_file_1_file_1_g10"; +2L AUGUSTUS exon 115713 116150 . - . transcript_id "2L-_file_1_file_1_g10.t1"; gene_id "2L-_file_1_file_1_g10"; +2L AUGUSTUS start_codon 116115 116117 . - 0 transcript_id "2L-_file_1_file_1_g10.t2"; gene_id "2L-_file_1_file_1_g10"; +2L AUGUSTUS start_codon 116148 116150 . - 0 transcript_id "2L-_file_1_file_1_g10.t1"; gene_id "2L-_file_1_file_1_g10"; +2L AUGUSTUS stop_codon 117331 117333 . - 0 transcript_id "2L-_file_1_file_1_g11.t1"; gene_id "2L-_file_1_file_1_g11"; +2L AUGUSTUS CDS 117331 117759 1 - 0 transcript_id "2L-_file_1_file_1_g11.t1"; gene_id "2L-_file_1_file_1_g11"; +2L AUGUSTUS exon 117331 117759 . - . transcript_id "2L-_file_1_file_1_g11.t1"; gene_id "2L-_file_1_file_1_g11"; +2L AUGUSTUS intron 117760 117819 1 - . transcript_id "2L-_file_1_file_1_g11.t1"; gene_id "2L-_file_1_file_1_g11"; +2L AUGUSTUS CDS 117820 118076 1 - 2 transcript_id "2L-_file_1_file_1_g11.t1"; gene_id "2L-_file_1_file_1_g11"; +2L AUGUSTUS exon 117820 118076 . - . transcript_id "2L-_file_1_file_1_g11.t1"; gene_id "2L-_file_1_file_1_g11"; +2L AUGUSTUS intron 118077 118135 1 - . transcript_id "2L-_file_1_file_1_g11.t1"; gene_id "2L-_file_1_file_1_g11"; +2L AUGUSTUS CDS 118136 118304 1 - 0 transcript_id "2L-_file_1_file_1_g11.t1"; gene_id "2L-_file_1_file_1_g11"; +2L AUGUSTUS exon 118136 118304 . - . transcript_id "2L-_file_1_file_1_g11.t1"; gene_id "2L-_file_1_file_1_g11"; +2L AUGUSTUS intron 118305 118360 1 - . transcript_id "2L-_file_1_file_1_g11.t1"; gene_id "2L-_file_1_file_1_g11"; +2L AUGUSTUS CDS 118361 118874 1 - 1 transcript_id "2L-_file_1_file_1_g11.t1"; gene_id "2L-_file_1_file_1_g11"; +2L AUGUSTUS exon 118361 118874 . - . transcript_id "2L-_file_1_file_1_g11.t1"; gene_id "2L-_file_1_file_1_g11"; +2L AUGUSTUS intron 118875 118930 1 - . transcript_id "2L-_file_1_file_1_g11.t1"; gene_id "2L-_file_1_file_1_g11"; +2L AUGUSTUS CDS 118931 119076 1 - 0 transcript_id "2L-_file_1_file_1_g11.t1"; gene_id "2L-_file_1_file_1_g11"; +2L AUGUSTUS exon 118931 119076 . - . transcript_id "2L-_file_1_file_1_g11.t1"; gene_id "2L-_file_1_file_1_g11"; +2L AUGUSTUS intron 119077 119133 1 - . transcript_id "2L-_file_1_file_1_g11.t1"; gene_id "2L-_file_1_file_1_g11"; +2L AUGUSTUS CDS 119134 119235 1 - 0 transcript_id "2L-_file_1_file_1_g11.t1"; gene_id "2L-_file_1_file_1_g11"; +2L AUGUSTUS exon 119134 119235 . - . transcript_id "2L-_file_1_file_1_g11.t1"; gene_id "2L-_file_1_file_1_g11"; +2L AUGUSTUS intron 119236 119287 1 - . transcript_id "2L-_file_1_file_1_g11.t1"; gene_id "2L-_file_1_file_1_g11"; +2L AUGUSTUS CDS 119288 119375 1 - 1 transcript_id "2L-_file_1_file_1_g11.t1"; gene_id "2L-_file_1_file_1_g11"; +2L AUGUSTUS exon 119288 119375 . - . transcript_id "2L-_file_1_file_1_g11.t1"; gene_id "2L-_file_1_file_1_g11"; +2L AUGUSTUS intron 119376 119430 1 - . transcript_id "2L-_file_1_file_1_g11.t1"; gene_id "2L-_file_1_file_1_g11"; +2L AUGUSTUS CDS 119431 119554 1 - 2 transcript_id "2L-_file_1_file_1_g11.t1"; gene_id "2L-_file_1_file_1_g11"; +2L AUGUSTUS exon 119431 119554 . - . transcript_id "2L-_file_1_file_1_g11.t1"; gene_id "2L-_file_1_file_1_g11"; +2L AUGUSTUS intron 119555 119827 1 - . transcript_id "2L-_file_1_file_1_g11.t1"; gene_id "2L-_file_1_file_1_g11"; +2L AUGUSTUS CDS 119828 120032 1 - 0 transcript_id "2L-_file_1_file_1_g11.t1"; gene_id "2L-_file_1_file_1_g11"; +2L AUGUSTUS exon 119828 120032 . - . transcript_id "2L-_file_1_file_1_g11.t1"; gene_id "2L-_file_1_file_1_g11"; +2L AUGUSTUS start_codon 120030 120032 . - 0 transcript_id "2L-_file_1_file_1_g11.t1"; gene_id "2L-_file_1_file_1_g11"; +2L AUGUSTUS stop_codon 123129 123131 . - 0 transcript_id "2L-_file_1_file_1_g12.t1"; gene_id "2L-_file_1_file_1_g12"; +2L AUGUSTUS CDS 123129 123629 1 - 0 transcript_id "2L-_file_1_file_1_g12.t1"; gene_id "2L-_file_1_file_1_g12"; +2L AUGUSTUS exon 123129 123629 . - . transcript_id "2L-_file_1_file_1_g12.t1"; gene_id "2L-_file_1_file_1_g12"; +2L AUGUSTUS intron 123630 123693 1 - . transcript_id "2L-_file_1_file_1_g12.t1"; gene_id "2L-_file_1_file_1_g12"; +2L AUGUSTUS CDS 123694 123794 1 - 2 transcript_id "2L-_file_1_file_1_g12.t1"; gene_id "2L-_file_1_file_1_g12"; +2L AUGUSTUS exon 123694 123794 . - . transcript_id "2L-_file_1_file_1_g12.t1"; gene_id "2L-_file_1_file_1_g12"; +2L AUGUSTUS intron 123795 123855 1 - . transcript_id "2L-_file_1_file_1_g12.t1"; gene_id "2L-_file_1_file_1_g12"; +2L AUGUSTUS CDS 123856 124024 1 - 0 transcript_id "2L-_file_1_file_1_g12.t1"; gene_id "2L-_file_1_file_1_g12"; +2L AUGUSTUS exon 123856 124024 . - . transcript_id "2L-_file_1_file_1_g12.t1"; gene_id "2L-_file_1_file_1_g12"; +2L AUGUSTUS intron 124025 124086 1 - . transcript_id "2L-_file_1_file_1_g12.t1"; gene_id "2L-_file_1_file_1_g12"; +2L AUGUSTUS CDS 124087 124920 1 - 0 transcript_id "2L-_file_1_file_1_g12.t1"; gene_id "2L-_file_1_file_1_g12"; +2L AUGUSTUS exon 124087 124920 . - . transcript_id "2L-_file_1_file_1_g12.t1"; gene_id "2L-_file_1_file_1_g12"; +2L AUGUSTUS intron 124921 125076 1 - . transcript_id "2L-_file_1_file_1_g12.t1"; gene_id "2L-_file_1_file_1_g12"; +2L AUGUSTUS CDS 125077 125266 1 - 1 transcript_id "2L-_file_1_file_1_g12.t1"; gene_id "2L-_file_1_file_1_g12"; +2L AUGUSTUS exon 125077 125266 . - . transcript_id "2L-_file_1_file_1_g12.t1"; gene_id "2L-_file_1_file_1_g12"; +2L AUGUSTUS intron 125267 126109 1 - . transcript_id "2L-_file_1_file_1_g12.t1"; gene_id "2L-_file_1_file_1_g12"; +2L AUGUSTUS CDS 126110 126227 1 - 2 transcript_id "2L-_file_1_file_1_g12.t1"; gene_id "2L-_file_1_file_1_g12"; +2L AUGUSTUS exon 126110 126227 . - . transcript_id "2L-_file_1_file_1_g12.t1"; gene_id "2L-_file_1_file_1_g12"; +2L AUGUSTUS intron 126228 128799 1 - . transcript_id "2L-_file_1_file_1_g12.t1"; gene_id "2L-_file_1_file_1_g12"; +2L AUGUSTUS CDS 128800 128983 1 - 0 transcript_id "2L-_file_1_file_1_g12.t1"; gene_id "2L-_file_1_file_1_g12"; +2L AUGUSTUS exon 128800 128983 . - . transcript_id "2L-_file_1_file_1_g12.t1"; gene_id "2L-_file_1_file_1_g12"; +2L AUGUSTUS start_codon 128981 128983 . - 0 transcript_id "2L-_file_1_file_1_g12.t1"; gene_id "2L-_file_1_file_1_g12"; +2L AUGUSTUS start_codon 132483 132485 . + 0 transcript_id "2L+_file_1_file_1_g13.t1"; gene_id "2L+_file_1_file_1_g13"; +2L AUGUSTUS CDS 132483 133682 1 + 0 transcript_id "2L+_file_1_file_1_g13.t1"; gene_id "2L+_file_1_file_1_g13"; +2L AUGUSTUS exon 132483 133682 . + . transcript_id "2L+_file_1_file_1_g13.t1"; gene_id "2L+_file_1_file_1_g13"; +2L AUGUSTUS stop_codon 133680 133682 . + 0 transcript_id "2L+_file_1_file_1_g13.t1"; gene_id "2L+_file_1_file_1_g13"; +2L AUGUSTUS stop_codon 138695 138697 . - 0 transcript_id "2L-_file_1_file_1_g14.t1"; gene_id "2L-_file_1_file_1_g14"; +2L AUGUSTUS CDS 138695 139198 1 - 0 transcript_id "2L-_file_1_file_1_g14.t1"; gene_id "2L-_file_1_file_1_g14"; +2L AUGUSTUS exon 138695 139198 . - . transcript_id "2L-_file_1_file_1_g14.t1"; gene_id "2L-_file_1_file_1_g14"; +2L AUGUSTUS intron 139199 139255 1 - . transcript_id "2L-_file_1_file_1_g14.t1"; gene_id "2L-_file_1_file_1_g14"; +2L AUGUSTUS CDS 139256 139336 1 - 0 transcript_id "2L-_file_1_file_1_g14.t1"; gene_id "2L-_file_1_file_1_g14"; +2L AUGUSTUS exon 139256 139336 . - . transcript_id "2L-_file_1_file_1_g14.t1"; gene_id "2L-_file_1_file_1_g14"; +2L AUGUSTUS start_codon 139334 139336 . - 0 transcript_id "2L-_file_1_file_1_g14.t1"; gene_id "2L-_file_1_file_1_g14"; +2L AUGUSTUS stop_codon 139471 139473 . - 0 transcript_id "2L-_file_1_file_1_g15.t1"; gene_id "2L-_file_1_file_1_g15"; +2L AUGUSTUS CDS 139471 139687 1 - 1 transcript_id "2L-_file_1_file_1_g15.t1"; gene_id "2L-_file_1_file_1_g15"; +2L AUGUSTUS exon 139471 139687 . - . transcript_id "2L-_file_1_file_1_g15.t1"; gene_id "2L-_file_1_file_1_g15"; +2L AUGUSTUS intron 139688 139740 1 - . transcript_id "2L-_file_1_file_1_g15.t1"; gene_id "2L-_file_1_file_1_g15"; +2L AUGUSTUS CDS 139741 139954 1 - 2 transcript_id "2L-_file_1_file_1_g15.t1"; gene_id "2L-_file_1_file_1_g15"; +2L AUGUSTUS exon 139741 139954 . - . transcript_id "2L-_file_1_file_1_g15.t1"; gene_id "2L-_file_1_file_1_g15"; +2L AUGUSTUS intron 139955 140113 1 - . transcript_id "2L-_file_1_file_1_g15.t1"; gene_id "2L-_file_1_file_1_g15"; +2L AUGUSTUS CDS 140114 140933 1 - 0 transcript_id "2L-_file_1_file_1_g15.t1"; gene_id "2L-_file_1_file_1_g15"; +2L AUGUSTUS exon 140114 140933 . - . transcript_id "2L-_file_1_file_1_g15.t1"; gene_id "2L-_file_1_file_1_g15"; +2L AUGUSTUS start_codon 140931 140933 . - 0 transcript_id "2L-_file_1_file_1_g15.t1"; gene_id "2L-_file_1_file_1_g15"; +2L AUGUSTUS stop_codon 141130 141132 . - 0 transcript_id "2L-_file_1_file_1_g16.t1"; gene_id "2L-_file_1_file_1_g16"; +2L AUGUSTUS CDS 141130 141340 1 - 1 transcript_id "2L-_file_1_file_1_g16.t1"; gene_id "2L-_file_1_file_1_g16"; +2L AUGUSTUS exon 141130 141340 . - . transcript_id "2L-_file_1_file_1_g16.t1"; gene_id "2L-_file_1_file_1_g16"; +2L AUGUSTUS intron 141341 141395 1 - . transcript_id "2L-_file_1_file_1_g16.t1"; gene_id "2L-_file_1_file_1_g16"; +2L AUGUSTUS CDS 141396 141609 1 - 2 transcript_id "2L-_file_1_file_1_g16.t1"; gene_id "2L-_file_1_file_1_g16"; +2L AUGUSTUS exon 141396 141609 . - . transcript_id "2L-_file_1_file_1_g16.t1"; gene_id "2L-_file_1_file_1_g16"; +2L AUGUSTUS intron 141610 141670 1 - . transcript_id "2L-_file_1_file_1_g16.t1"; gene_id "2L-_file_1_file_1_g16"; +2L AUGUSTUS CDS 141671 142487 1 - 0 transcript_id "2L-_file_1_file_1_g16.t1"; gene_id "2L-_file_1_file_1_g16"; +2L AUGUSTUS exon 141671 142487 . - . transcript_id "2L-_file_1_file_1_g16.t1"; gene_id "2L-_file_1_file_1_g16"; +2L AUGUSTUS start_codon 142485 142487 . - 0 transcript_id "2L-_file_1_file_1_g16.t1"; gene_id "2L-_file_1_file_1_g16"; +2L AUGUSTUS start_codon 143378 143380 . + 0 transcript_id "2L+_file_1_file_1_g17.t1"; gene_id "2L+_file_1_file_1_g17"; +2L AUGUSTUS CDS 143378 144094 1 + 0 transcript_id "2L+_file_1_file_1_g17.t1"; gene_id "2L+_file_1_file_1_g17"; +2L AUGUSTUS exon 143378 144094 . + . transcript_id "2L+_file_1_file_1_g17.t1"; gene_id "2L+_file_1_file_1_g17"; +2L AUGUSTUS stop_codon 144092 144094 . + 0 transcript_id "2L+_file_1_file_1_g17.t1"; gene_id "2L+_file_1_file_1_g17"; +2L AUGUSTUS stop_codon 144374 144376 . - 0 transcript_id "2L-_file_1_file_1_g18.t1"; gene_id "2L-_file_1_file_1_g18"; +2L AUGUSTUS CDS 144374 145910 1 - 1 transcript_id "2L-_file_1_file_1_g18.t1"; gene_id "2L-_file_1_file_1_g18"; +2L AUGUSTUS exon 144374 145910 . - . transcript_id "2L-_file_1_file_1_g18.t1"; gene_id "2L-_file_1_file_1_g18"; +2L AUGUSTUS intron 145911 147348 1 - . transcript_id "2L-_file_1_file_1_g18.t1"; gene_id "2L-_file_1_file_1_g18"; +2L AUGUSTUS CDS 147349 147454 1 - 2 transcript_id "2L-_file_1_file_1_g18.t1"; gene_id "2L-_file_1_file_1_g18"; +2L AUGUSTUS exon 147349 147454 . - . transcript_id "2L-_file_1_file_1_g18.t1"; gene_id "2L-_file_1_file_1_g18"; +2L AUGUSTUS intron 147455 147510 1 - . transcript_id "2L-_file_1_file_1_g18.t1"; gene_id "2L-_file_1_file_1_g18"; +2L AUGUSTUS CDS 147511 147710 1 - 1 transcript_id "2L-_file_1_file_1_g18.t1"; gene_id "2L-_file_1_file_1_g18"; +2L AUGUSTUS exon 147511 147710 . - . transcript_id "2L-_file_1_file_1_g18.t1"; gene_id "2L-_file_1_file_1_g18"; +2L AUGUSTUS intron 147711 147764 1 - . transcript_id "2L-_file_1_file_1_g18.t1"; gene_id "2L-_file_1_file_1_g18"; +2L AUGUSTUS CDS 147765 147936 1 - 2 transcript_id "2L-_file_1_file_1_g18.t1"; gene_id "2L-_file_1_file_1_g18"; +2L AUGUSTUS exon 147765 147936 . - . transcript_id "2L-_file_1_file_1_g18.t1"; gene_id "2L-_file_1_file_1_g18"; +2L AUGUSTUS intron 147937 147994 1 - . transcript_id "2L-_file_1_file_1_g18.t1"; gene_id "2L-_file_1_file_1_g18"; +2L AUGUSTUS CDS 147995 148037 1 - 0 transcript_id "2L-_file_1_file_1_g18.t1"; gene_id "2L-_file_1_file_1_g18"; +2L AUGUSTUS exon 147995 148037 . - . transcript_id "2L-_file_1_file_1_g18.t1"; gene_id "2L-_file_1_file_1_g18"; +2L AUGUSTUS intron 148038 148091 1 - . transcript_id "2L-_file_1_file_1_g18.t1"; gene_id "2L-_file_1_file_1_g18"; +2L AUGUSTUS CDS 148092 148173 1 - 1 transcript_id "2L-_file_1_file_1_g18.t1"; gene_id "2L-_file_1_file_1_g18"; +2L AUGUSTUS exon 148092 148173 . - . transcript_id "2L-_file_1_file_1_g18.t1"; gene_id "2L-_file_1_file_1_g18"; +2L AUGUSTUS intron 148174 148337 1 - . transcript_id "2L-_file_1_file_1_g18.t1"; gene_id "2L-_file_1_file_1_g18"; +2L AUGUSTUS CDS 148338 148825 1 - 0 transcript_id "2L-_file_1_file_1_g18.t1"; gene_id "2L-_file_1_file_1_g18"; +2L AUGUSTUS exon 148338 148825 . - . transcript_id "2L-_file_1_file_1_g18.t1"; gene_id "2L-_file_1_file_1_g18"; +2L AUGUSTUS intron 148826 148878 1 - . transcript_id "2L-_file_1_file_1_g18.t1"; gene_id "2L-_file_1_file_1_g18"; +2L AUGUSTUS CDS 148879 149226 1 - 0 transcript_id "2L-_file_1_file_1_g18.t1"; gene_id "2L-_file_1_file_1_g18"; +2L AUGUSTUS exon 148879 149226 . - . transcript_id "2L-_file_1_file_1_g18.t1"; gene_id "2L-_file_1_file_1_g18"; +2L AUGUSTUS intron 149227 151114 1 - . transcript_id "2L-_file_1_file_1_g18.t1"; gene_id "2L-_file_1_file_1_g18"; +2L AUGUSTUS CDS 151115 153106 1 - 0 transcript_id "2L-_file_1_file_1_g18.t1"; gene_id "2L-_file_1_file_1_g18"; +2L AUGUSTUS exon 151115 153106 . - . transcript_id "2L-_file_1_file_1_g18.t1"; gene_id "2L-_file_1_file_1_g18"; +2L AUGUSTUS start_codon 153104 153106 . - 0 transcript_id "2L-_file_1_file_1_g18.t1"; gene_id "2L-_file_1_file_1_g18"; +2L AUGUSTUS stop_codon 153677 153679 . - 0 transcript_id "2L-_file_1_file_1_g19.t1"; gene_id "2L-_file_1_file_1_g19"; +2L AUGUSTUS CDS 153677 155059 1 - 0 transcript_id "2L-_file_1_file_1_g19.t1"; gene_id "2L-_file_1_file_1_g19"; +2L AUGUSTUS exon 153677 155059 . - . transcript_id "2L-_file_1_file_1_g19.t1"; gene_id "2L-_file_1_file_1_g19"; +2L AUGUSTUS intron 155060 155127 1 - . transcript_id "2L-_file_1_file_1_g19.t1"; gene_id "2L-_file_1_file_1_g19"; +2L AUGUSTUS CDS 155128 155247 1 - 0 transcript_id "2L-_file_1_file_1_g19.t1"; gene_id "2L-_file_1_file_1_g19"; +2L AUGUSTUS exon 155128 155247 . - . transcript_id "2L-_file_1_file_1_g19.t1"; gene_id "2L-_file_1_file_1_g19"; +2L AUGUSTUS start_codon 155245 155247 . - 0 transcript_id "2L-_file_1_file_1_g19.t1"; gene_id "2L-_file_1_file_1_g19"; +2L AUGUSTUS start_codon 155572 155574 . + 0 transcript_id "2L+_file_1_file_1_g20.t1"; gene_id "2L+_file_1_file_1_g20"; +2L AUGUSTUS CDS 155572 155784 1 + 0 transcript_id "2L+_file_1_file_1_g20.t1"; gene_id "2L+_file_1_file_1_g20"; +2L AUGUSTUS exon 155572 155784 . + . transcript_id "2L+_file_1_file_1_g20.t1"; gene_id "2L+_file_1_file_1_g20"; +2L AUGUSTUS intron 155785 155857 1 + . transcript_id "2L+_file_1_file_1_g20.t1"; gene_id "2L+_file_1_file_1_g20"; +2L AUGUSTUS CDS 155858 155950 1 + 0 transcript_id "2L+_file_1_file_1_g20.t1"; gene_id "2L+_file_1_file_1_g20"; +2L AUGUSTUS exon 155858 155950 . + . transcript_id "2L+_file_1_file_1_g20.t1"; gene_id "2L+_file_1_file_1_g20"; +2L AUGUSTUS stop_codon 155948 155950 . + 0 transcript_id "2L+_file_1_file_1_g20.t1"; gene_id "2L+_file_1_file_1_g20"; +2L AUGUSTUS start_codon 156241 156243 . + 0 transcript_id "2L+_file_1_file_1_g21.t1"; gene_id "2L+_file_1_file_1_g21"; +2L AUGUSTUS CDS 156241 156348 1 + 0 transcript_id "2L+_file_1_file_1_g21.t1"; gene_id "2L+_file_1_file_1_g21"; +2L AUGUSTUS exon 156241 156348 . + . transcript_id "2L+_file_1_file_1_g21.t1"; gene_id "2L+_file_1_file_1_g21"; +2L AUGUSTUS intron 156349 156422 1 + . transcript_id "2L+_file_1_file_1_g21.t1"; gene_id "2L+_file_1_file_1_g21"; +2L AUGUSTUS CDS 156423 156552 1 + 0 transcript_id "2L+_file_1_file_1_g21.t1"; gene_id "2L+_file_1_file_1_g21"; +2L AUGUSTUS exon 156423 156552 . + . transcript_id "2L+_file_1_file_1_g21.t1"; gene_id "2L+_file_1_file_1_g21"; +2L AUGUSTUS intron 156553 156735 1 + . transcript_id "2L+_file_1_file_1_g21.t1"; gene_id "2L+_file_1_file_1_g21"; +2L AUGUSTUS CDS 156736 157541 1 + 2 transcript_id "2L+_file_1_file_1_g21.t1"; gene_id "2L+_file_1_file_1_g21"; +2L AUGUSTUS exon 156736 157541 . + . transcript_id "2L+_file_1_file_1_g21.t1"; gene_id "2L+_file_1_file_1_g21"; +2L AUGUSTUS stop_codon 157539 157541 . + 0 transcript_id "2L+_file_1_file_1_g21.t1"; gene_id "2L+_file_1_file_1_g21"; +2L AUGUSTUS start_codon 183412 183414 . + 0 transcript_id "2L+_file_1_file_1_g22.t1"; gene_id "2L+_file_1_file_1_g22"; +2L AUGUSTUS CDS 183412 183419 0.84 + 0 transcript_id "2L+_file_1_file_1_g22.t1"; gene_id "2L+_file_1_file_1_g22"; +2L AUGUSTUS exon 183412 183419 . + . transcript_id "2L+_file_1_file_1_g22.t1"; gene_id "2L+_file_1_file_1_g22"; +2L AUGUSTUS intron 183420 183760 0.84 + . transcript_id "2L+_file_1_file_1_g22.t1"; gene_id "2L+_file_1_file_1_g22"; +2L AUGUSTUS CDS 183761 185082 1 + 1 transcript_id "2L+_file_1_file_1_g22.t1"; gene_id "2L+_file_1_file_1_g22"; +2L AUGUSTUS exon 183761 185082 . + . transcript_id "2L+_file_1_file_1_g22.t1"; gene_id "2L+_file_1_file_1_g22"; +2L AUGUSTUS intron 185083 185151 1 + . transcript_id "2L+_file_1_file_1_g22.t1"; gene_id "2L+_file_1_file_1_g22"; +2L AUGUSTUS CDS 185152 186123 0.97 + 2 transcript_id "2L+_file_1_file_1_g22.t1"; gene_id "2L+_file_1_file_1_g22"; +2L AUGUSTUS exon 185152 186123 . + . transcript_id "2L+_file_1_file_1_g22.t1"; gene_id "2L+_file_1_file_1_g22"; +2L AUGUSTUS intron 186124 186192 1 + . transcript_id "2L+_file_1_file_1_g22.t1"; gene_id "2L+_file_1_file_1_g22"; +2L AUGUSTUS CDS 186193 186855 1 + 2 transcript_id "2L+_file_1_file_1_g22.t1"; gene_id "2L+_file_1_file_1_g22"; +2L AUGUSTUS exon 186193 186855 . + . transcript_id "2L+_file_1_file_1_g22.t1"; gene_id "2L+_file_1_file_1_g22"; +2L AUGUSTUS intron 186856 186909 1 + . transcript_id "2L+_file_1_file_1_g22.t1"; gene_id "2L+_file_1_file_1_g22"; +2L AUGUSTUS CDS 186910 187016 1 + 2 transcript_id "2L+_file_1_file_1_g22.t1"; gene_id "2L+_file_1_file_1_g22"; +2L AUGUSTUS exon 186910 187016 . + . transcript_id "2L+_file_1_file_1_g22.t1"; gene_id "2L+_file_1_file_1_g22"; +2L AUGUSTUS intron 187017 187481 1 + . transcript_id "2L+_file_1_file_1_g22.t1"; gene_id "2L+_file_1_file_1_g22"; +2L AUGUSTUS CDS 187482 199575 0.91 + 0 transcript_id "2L+_file_1_file_1_g22.t1"; gene_id "2L+_file_1_file_1_g22"; +2L AUGUSTUS exon 187482 199575 . + . transcript_id "2L+_file_1_file_1_g22.t1"; gene_id "2L+_file_1_file_1_g22"; +2L AUGUSTUS intron 199576 199636 1 + . transcript_id "2L+_file_1_file_1_g22.t1"; gene_id "2L+_file_1_file_1_g22"; +2L AUGUSTUS CDS 199637 199743 1 + 2 transcript_id "2L+_file_1_file_1_g22.t1"; gene_id "2L+_file_1_file_1_g22"; +2L AUGUSTUS exon 199637 199743 . + . transcript_id "2L+_file_1_file_1_g22.t1"; gene_id "2L+_file_1_file_1_g22"; +2L AUGUSTUS intron 199744 199902 1 + . transcript_id "2L+_file_1_file_1_g22.t1"; gene_id "2L+_file_1_file_1_g22"; +2L AUGUSTUS CDS 199903 199983 1 + 0 transcript_id "2L+_file_1_file_1_g22.t1"; gene_id "2L+_file_1_file_1_g22"; +2L AUGUSTUS exon 199903 199983 . + . transcript_id "2L+_file_1_file_1_g22.t1"; gene_id "2L+_file_1_file_1_g22"; +2L AUGUSTUS intron 199984 200119 1 + . transcript_id "2L+_file_1_file_1_g22.t1"; gene_id "2L+_file_1_file_1_g22"; +2L AUGUSTUS CDS 200120 200315 1 + 0 transcript_id "2L+_file_1_file_1_g22.t1"; gene_id "2L+_file_1_file_1_g22"; +2L AUGUSTUS exon 200120 200315 . + . transcript_id "2L+_file_1_file_1_g22.t1"; gene_id "2L+_file_1_file_1_g22"; +2L AUGUSTUS intron 200316 200375 1 + . transcript_id "2L+_file_1_file_1_g22.t1"; gene_id "2L+_file_1_file_1_g22"; +2L AUGUSTUS CDS 200376 200675 1 + 2 transcript_id "2L+_file_1_file_1_g22.t1"; gene_id "2L+_file_1_file_1_g22"; +2L AUGUSTUS exon 200376 200675 . + . transcript_id "2L+_file_1_file_1_g22.t1"; gene_id "2L+_file_1_file_1_g22"; +2L AUGUSTUS intron 200676 200741 1 + . transcript_id "2L+_file_1_file_1_g22.t1"; gene_id "2L+_file_1_file_1_g22"; +2L AUGUSTUS CDS 200742 201061 1 + 2 transcript_id "2L+_file_1_file_1_g22.t1"; gene_id "2L+_file_1_file_1_g22"; +2L AUGUSTUS exon 200742 201061 . + . transcript_id "2L+_file_1_file_1_g22.t1"; gene_id "2L+_file_1_file_1_g22"; +2L AUGUSTUS intron 201062 201126 1 + . transcript_id "2L+_file_1_file_1_g22.t1"; gene_id "2L+_file_1_file_1_g22"; +2L AUGUSTUS CDS 201127 201414 1 + 0 transcript_id "2L+_file_1_file_1_g22.t1"; gene_id "2L+_file_1_file_1_g22"; +2L AUGUSTUS exon 201127 201414 . + . transcript_id "2L+_file_1_file_1_g22.t1"; gene_id "2L+_file_1_file_1_g22"; +2L AUGUSTUS stop_codon 201412 201414 . + 0 transcript_id "2L+_file_1_file_1_g22.t1"; gene_id "2L+_file_1_file_1_g22"; +2L AUGUSTUS start_codon 203870 203872 . + 0 transcript_id "2L+_file_1_file_1_g23.t1"; gene_id "2L+_file_1_file_1_g23"; +2L AUGUSTUS CDS 203870 203891 1 + 0 transcript_id "2L+_file_1_file_1_g23.t1"; gene_id "2L+_file_1_file_1_g23"; +2L AUGUSTUS exon 203870 203891 . + . transcript_id "2L+_file_1_file_1_g23.t1"; gene_id "2L+_file_1_file_1_g23"; +2L AUGUSTUS intron 203892 203992 1 + . transcript_id "2L+_file_1_file_1_g23.t1"; gene_id "2L+_file_1_file_1_g23"; +2L AUGUSTUS CDS 203993 204717 1 + 2 transcript_id "2L+_file_1_file_1_g23.t1"; gene_id "2L+_file_1_file_1_g23"; +2L AUGUSTUS exon 203993 204717 . + . transcript_id "2L+_file_1_file_1_g23.t1"; gene_id "2L+_file_1_file_1_g23"; +2L AUGUSTUS stop_codon 204715 204717 . + 0 transcript_id "2L+_file_1_file_1_g23.t1"; gene_id "2L+_file_1_file_1_g23"; +2L AUGUSTUS stop_codon 205044 205046 . - 0 transcript_id "2L-_file_1_file_1_g24.t1"; gene_id "2L-_file_1_file_1_g24"; +2L AUGUSTUS CDS 205044 205212 1 - 1 transcript_id "2L-_file_1_file_1_g24.t1"; gene_id "2L-_file_1_file_1_g24"; +2L AUGUSTUS exon 205044 205212 . - . transcript_id "2L-_file_1_file_1_g24.t1"; gene_id "2L-_file_1_file_1_g24"; +2L AUGUSTUS intron 205213 205271 1 - . transcript_id "2L-_file_1_file_1_g24.t1"; gene_id "2L-_file_1_file_1_g24"; +2L AUGUSTUS CDS 205272 205943 1 - 1 transcript_id "2L-_file_1_file_1_g24.t1"; gene_id "2L-_file_1_file_1_g24"; +2L AUGUSTUS exon 205272 205943 . - . transcript_id "2L-_file_1_file_1_g24.t1"; gene_id "2L-_file_1_file_1_g24"; +2L AUGUSTUS intron 205944 206000 1 - . transcript_id "2L-_file_1_file_1_g24.t1"; gene_id "2L-_file_1_file_1_g24"; +2L AUGUSTUS CDS 206001 206044 1 - 0 transcript_id "2L-_file_1_file_1_g24.t1"; gene_id "2L-_file_1_file_1_g24"; +2L AUGUSTUS exon 206001 206044 . - . transcript_id "2L-_file_1_file_1_g24.t1"; gene_id "2L-_file_1_file_1_g24"; +2L AUGUSTUS start_codon 206042 206044 . - 0 transcript_id "2L-_file_1_file_1_g24.t1"; gene_id "2L-_file_1_file_1_g24"; +2L AUGUSTUS start_codon 207512 207514 . + 0 transcript_id "2L+_file_1_file_1_g25.t1"; gene_id "2L+_file_1_file_1_g25"; +2L AUGUSTUS CDS 207512 207631 1 + 0 transcript_id "2L+_file_1_file_1_g25.t1"; gene_id "2L+_file_1_file_1_g25"; +2L AUGUSTUS exon 207512 207631 . + . transcript_id "2L+_file_1_file_1_g25.t1"; gene_id "2L+_file_1_file_1_g25"; +2L AUGUSTUS intron 207632 207710 1 + . transcript_id "2L+_file_1_file_1_g25.t1"; gene_id "2L+_file_1_file_1_g25"; +2L AUGUSTUS CDS 207711 208608 1 + 0 transcript_id "2L+_file_1_file_1_g25.t1"; gene_id "2L+_file_1_file_1_g25"; +2L AUGUSTUS exon 207711 208608 . + . transcript_id "2L+_file_1_file_1_g25.t1"; gene_id "2L+_file_1_file_1_g25"; +2L AUGUSTUS intron 208609 208728 1 + . transcript_id "2L+_file_1_file_1_g25.t1"; gene_id "2L+_file_1_file_1_g25"; +2L AUGUSTUS CDS 208729 209858 1 + 2 transcript_id "2L+_file_1_file_1_g25.t1"; gene_id "2L+_file_1_file_1_g25"; +2L AUGUSTUS exon 208729 209858 . + . transcript_id "2L+_file_1_file_1_g25.t1"; gene_id "2L+_file_1_file_1_g25"; +2L AUGUSTUS stop_codon 209856 209858 . + 0 transcript_id "2L+_file_1_file_1_g25.t1"; gene_id "2L+_file_1_file_1_g25"; +2L AUGUSTUS stop_codon 212185 212187 . - 0 transcript_id "2L-_file_1_file_1_g26.t1"; gene_id "2L-_file_1_file_1_g26"; +2L AUGUSTUS stop_codon 212185 212187 . - 0 transcript_id "2L-_file_1_file_1_g26.t2"; gene_id "2L-_file_1_file_1_g26"; +2L AUGUSTUS CDS 212185 214942 0.99 - 1 transcript_id "2L-_file_1_file_1_g26.t1"; gene_id "2L-_file_1_file_1_g26"; +2L AUGUSTUS CDS 212185 214942 1 - 1 transcript_id "2L-_file_1_file_1_g26.t2"; gene_id "2L-_file_1_file_1_g26"; +2L AUGUSTUS exon 212185 214942 . - . transcript_id "2L-_file_1_file_1_g26.t1"; gene_id "2L-_file_1_file_1_g26"; +2L AUGUSTUS exon 212185 214942 . - . transcript_id "2L-_file_1_file_1_g26.t2"; gene_id "2L-_file_1_file_1_g26"; +2L AUGUSTUS intron 214943 215033 1 - . transcript_id "2L-_file_1_file_1_g26.t1"; gene_id "2L-_file_1_file_1_g26"; +2L AUGUSTUS intron 214943 215033 1 - . transcript_id "2L-_file_1_file_1_g26.t2"; gene_id "2L-_file_1_file_1_g26"; +2L AUGUSTUS CDS 215034 215676 1 - 2 transcript_id "2L-_file_1_file_1_g26.t1"; gene_id "2L-_file_1_file_1_g26"; +2L AUGUSTUS CDS 215034 215676 1 - 2 transcript_id "2L-_file_1_file_1_g26.t2"; gene_id "2L-_file_1_file_1_g26"; +2L AUGUSTUS exon 215034 215676 . - . transcript_id "2L-_file_1_file_1_g26.t1"; gene_id "2L-_file_1_file_1_g26"; +2L AUGUSTUS exon 215034 215676 . - . transcript_id "2L-_file_1_file_1_g26.t2"; gene_id "2L-_file_1_file_1_g26"; +2L AUGUSTUS intron 215677 215772 1 - . transcript_id "2L-_file_1_file_1_g26.t1"; gene_id "2L-_file_1_file_1_g26"; +2L AUGUSTUS intron 215677 215772 1 - . transcript_id "2L-_file_1_file_1_g26.t2"; gene_id "2L-_file_1_file_1_g26"; +2L AUGUSTUS CDS 215773 216007 1 - 0 transcript_id "2L-_file_1_file_1_g26.t1"; gene_id "2L-_file_1_file_1_g26"; +2L AUGUSTUS CDS 215773 216007 1 - 0 transcript_id "2L-_file_1_file_1_g26.t2"; gene_id "2L-_file_1_file_1_g26"; +2L AUGUSTUS exon 215773 216007 . - . transcript_id "2L-_file_1_file_1_g26.t1"; gene_id "2L-_file_1_file_1_g26"; +2L AUGUSTUS exon 215773 216007 . - . transcript_id "2L-_file_1_file_1_g26.t2"; gene_id "2L-_file_1_file_1_g26"; +2L AUGUSTUS intron 216008 216076 1 - . transcript_id "2L-_file_1_file_1_g26.t1"; gene_id "2L-_file_1_file_1_g26"; +2L AUGUSTUS intron 216008 216076 1 - . transcript_id "2L-_file_1_file_1_g26.t2"; gene_id "2L-_file_1_file_1_g26"; +2L AUGUSTUS CDS 216077 216275 1 - 1 transcript_id "2L-_file_1_file_1_g26.t1"; gene_id "2L-_file_1_file_1_g26"; +2L AUGUSTUS CDS 216077 216275 1 - 1 transcript_id "2L-_file_1_file_1_g26.t2"; gene_id "2L-_file_1_file_1_g26"; +2L AUGUSTUS exon 216077 216275 . - . transcript_id "2L-_file_1_file_1_g26.t1"; gene_id "2L-_file_1_file_1_g26"; +2L AUGUSTUS exon 216077 216275 . - . transcript_id "2L-_file_1_file_1_g26.t2"; gene_id "2L-_file_1_file_1_g26"; +2L AUGUSTUS intron 216276 216344 1 - . transcript_id "2L-_file_1_file_1_g26.t1"; gene_id "2L-_file_1_file_1_g26"; +2L AUGUSTUS intron 216276 216344 1 - . transcript_id "2L-_file_1_file_1_g26.t2"; gene_id "2L-_file_1_file_1_g26"; +2L AUGUSTUS CDS 216345 216573 1 - 2 transcript_id "2L-_file_1_file_1_g26.t1"; gene_id "2L-_file_1_file_1_g26"; +2L AUGUSTUS CDS 216345 216573 1 - 2 transcript_id "2L-_file_1_file_1_g26.t2"; gene_id "2L-_file_1_file_1_g26"; +2L AUGUSTUS exon 216345 216573 . - . transcript_id "2L-_file_1_file_1_g26.t1"; gene_id "2L-_file_1_file_1_g26"; +2L AUGUSTUS exon 216345 216573 . - . transcript_id "2L-_file_1_file_1_g26.t2"; gene_id "2L-_file_1_file_1_g26"; +2L AUGUSTUS intron 216574 216631 1 - . transcript_id "2L-_file_1_file_1_g26.t1"; gene_id "2L-_file_1_file_1_g26"; +2L AUGUSTUS intron 216574 216631 1 - . transcript_id "2L-_file_1_file_1_g26.t2"; gene_id "2L-_file_1_file_1_g26"; +2L AUGUSTUS CDS 216632 218885 0.62 - 0 transcript_id "2L-_file_1_file_1_g26.t1"; gene_id "2L-_file_1_file_1_g26"; +2L AUGUSTUS CDS 216632 218885 0.71 - 0 transcript_id "2L-_file_1_file_1_g26.t2"; gene_id "2L-_file_1_file_1_g26"; +2L AUGUSTUS exon 216632 218885 . - . transcript_id "2L-_file_1_file_1_g26.t1"; gene_id "2L-_file_1_file_1_g26"; +2L AUGUSTUS exon 216632 218885 . - . transcript_id "2L-_file_1_file_1_g26.t2"; gene_id "2L-_file_1_file_1_g26"; +2L AUGUSTUS intron 218886 226115 0.62 - . transcript_id "2L-_file_1_file_1_g26.t1"; gene_id "2L-_file_1_file_1_g26"; +2L AUGUSTUS intron 218886 226115 0.68 - . transcript_id "2L-_file_1_file_1_g26.t2"; gene_id "2L-_file_1_file_1_g26"; +2L AUGUSTUS CDS 226116 226508 0.62 - 0 transcript_id "2L-_file_1_file_1_g26.t1"; gene_id "2L-_file_1_file_1_g26"; +2L AUGUSTUS CDS 226116 226508 0.67 - 0 transcript_id "2L-_file_1_file_1_g26.t2"; gene_id "2L-_file_1_file_1_g26"; +2L AUGUSTUS exon 226116 226508 . - . transcript_id "2L-_file_1_file_1_g26.t1"; gene_id "2L-_file_1_file_1_g26"; +2L AUGUSTUS exon 226116 226508 . - . transcript_id "2L-_file_1_file_1_g26.t2"; gene_id "2L-_file_1_file_1_g26"; +2L AUGUSTUS intron 226509 227371 0.99 - . transcript_id "2L-_file_1_file_1_g26.t2"; gene_id "2L-_file_1_file_1_g26"; +2L AUGUSTUS intron 226509 227371 1 - . transcript_id "2L-_file_1_file_1_g26.t1"; gene_id "2L-_file_1_file_1_g26"; +2L AUGUSTUS CDS 227372 228281 1 - 1 transcript_id "2L-_file_1_file_1_g26.t1"; gene_id "2L-_file_1_file_1_g26"; +2L AUGUSTUS CDS 227372 228281 1 - 1 transcript_id "2L-_file_1_file_1_g26.t2"; gene_id "2L-_file_1_file_1_g26"; +2L AUGUSTUS exon 227372 228281 . - . transcript_id "2L-_file_1_file_1_g26.t1"; gene_id "2L-_file_1_file_1_g26"; +2L AUGUSTUS exon 227372 228281 . - . transcript_id "2L-_file_1_file_1_g26.t2"; gene_id "2L-_file_1_file_1_g26"; +2L AUGUSTUS intron 228282 229172 1 - . transcript_id "2L-_file_1_file_1_g26.t1"; gene_id "2L-_file_1_file_1_g26"; +2L AUGUSTUS intron 228282 229172 1 - . transcript_id "2L-_file_1_file_1_g26.t2"; gene_id "2L-_file_1_file_1_g26"; +2L AUGUSTUS CDS 229173 229382 1 - 1 transcript_id "2L-_file_1_file_1_g26.t1"; gene_id "2L-_file_1_file_1_g26"; +2L AUGUSTUS CDS 229173 229382 1 - 1 transcript_id "2L-_file_1_file_1_g26.t2"; gene_id "2L-_file_1_file_1_g26"; +2L AUGUSTUS exon 229173 229382 . - . transcript_id "2L-_file_1_file_1_g26.t1"; gene_id "2L-_file_1_file_1_g26"; +2L AUGUSTUS exon 229173 229382 . - . transcript_id "2L-_file_1_file_1_g26.t2"; gene_id "2L-_file_1_file_1_g26"; +2L AUGUSTUS intron 229383 230537 1 - . transcript_id "2L-_file_1_file_1_g26.t1"; gene_id "2L-_file_1_file_1_g26"; +2L AUGUSTUS intron 229383 230537 1 - . transcript_id "2L-_file_1_file_1_g26.t2"; gene_id "2L-_file_1_file_1_g26"; +2L AUGUSTUS CDS 230538 230627 1 - 1 transcript_id "2L-_file_1_file_1_g26.t1"; gene_id "2L-_file_1_file_1_g26"; +2L AUGUSTUS CDS 230538 230627 1 - 1 transcript_id "2L-_file_1_file_1_g26.t2"; gene_id "2L-_file_1_file_1_g26"; +2L AUGUSTUS exon 230538 230627 . - . transcript_id "2L-_file_1_file_1_g26.t1"; gene_id "2L-_file_1_file_1_g26"; +2L AUGUSTUS exon 230538 230627 . - . transcript_id "2L-_file_1_file_1_g26.t2"; gene_id "2L-_file_1_file_1_g26"; +2L AUGUSTUS intron 230628 230757 1 - . transcript_id "2L-_file_1_file_1_g26.t1"; gene_id "2L-_file_1_file_1_g26"; +2L AUGUSTUS intron 230628 230757 1 - . transcript_id "2L-_file_1_file_1_g26.t2"; gene_id "2L-_file_1_file_1_g26"; +2L AUGUSTUS CDS 230758 231034 1 - 2 transcript_id "2L-_file_1_file_1_g26.t1"; gene_id "2L-_file_1_file_1_g26"; +2L AUGUSTUS CDS 230758 231034 1 - 2 transcript_id "2L-_file_1_file_1_g26.t2"; gene_id "2L-_file_1_file_1_g26"; +2L AUGUSTUS exon 230758 231034 . - . transcript_id "2L-_file_1_file_1_g26.t1"; gene_id "2L-_file_1_file_1_g26"; +2L AUGUSTUS exon 230758 231034 . - . transcript_id "2L-_file_1_file_1_g26.t2"; gene_id "2L-_file_1_file_1_g26"; +2L AUGUSTUS intron 231035 231947 1 - . transcript_id "2L-_file_1_file_1_g26.t2"; gene_id "2L-_file_1_file_1_g26"; +2L AUGUSTUS intron 231035 231962 0.99 - . transcript_id "2L-_file_1_file_1_g26.t1"; gene_id "2L-_file_1_file_1_g26"; +2L AUGUSTUS CDS 231948 232101 1 - 0 transcript_id "2L-_file_1_file_1_g26.t2"; gene_id "2L-_file_1_file_1_g26"; +2L AUGUSTUS exon 231948 232101 . - . transcript_id "2L-_file_1_file_1_g26.t2"; gene_id "2L-_file_1_file_1_g26"; +2L AUGUSTUS CDS 231963 232101 0.99 - 0 transcript_id "2L-_file_1_file_1_g26.t1"; gene_id "2L-_file_1_file_1_g26"; +2L AUGUSTUS exon 231963 232101 . - . transcript_id "2L-_file_1_file_1_g26.t1"; gene_id "2L-_file_1_file_1_g26"; +2L AUGUSTUS intron 232102 232291 1 - . transcript_id "2L-_file_1_file_1_g26.t1"; gene_id "2L-_file_1_file_1_g26"; +2L AUGUSTUS intron 232102 232291 1 - . transcript_id "2L-_file_1_file_1_g26.t2"; gene_id "2L-_file_1_file_1_g26"; +2L AUGUSTUS CDS 232292 232351 1 - 0 transcript_id "2L-_file_1_file_1_g26.t1"; gene_id "2L-_file_1_file_1_g26"; +2L AUGUSTUS CDS 232292 232351 1 - 0 transcript_id "2L-_file_1_file_1_g26.t2"; gene_id "2L-_file_1_file_1_g26"; +2L AUGUSTUS exon 232292 232351 . - . transcript_id "2L-_file_1_file_1_g26.t1"; gene_id "2L-_file_1_file_1_g26"; +2L AUGUSTUS exon 232292 232351 . - . transcript_id "2L-_file_1_file_1_g26.t2"; gene_id "2L-_file_1_file_1_g26"; +2L AUGUSTUS intron 232352 232469 0.96 - . transcript_id "2L-_file_1_file_1_g26.t1"; gene_id "2L-_file_1_file_1_g26"; +2L AUGUSTUS intron 232352 232469 1 - . transcript_id "2L-_file_1_file_1_g26.t2"; gene_id "2L-_file_1_file_1_g26"; +2L AUGUSTUS CDS 232470 232481 0.96 - 0 transcript_id "2L-_file_1_file_1_g26.t1"; gene_id "2L-_file_1_file_1_g26"; +2L AUGUSTUS CDS 232470 232481 1 - 0 transcript_id "2L-_file_1_file_1_g26.t2"; gene_id "2L-_file_1_file_1_g26"; +2L AUGUSTUS exon 232470 232481 . - . transcript_id "2L-_file_1_file_1_g26.t1"; gene_id "2L-_file_1_file_1_g26"; +2L AUGUSTUS exon 232470 232481 . - . transcript_id "2L-_file_1_file_1_g26.t2"; gene_id "2L-_file_1_file_1_g26"; +2L AUGUSTUS start_codon 232479 232481 . - 0 transcript_id "2L-_file_1_file_1_g26.t1"; gene_id "2L-_file_1_file_1_g26"; +2L AUGUSTUS start_codon 232479 232481 . - 0 transcript_id "2L-_file_1_file_1_g26.t2"; gene_id "2L-_file_1_file_1_g26"; +2L AUGUSTUS start_codon 232575 232577 . + 0 transcript_id "2L+_file_1_file_1_g27.t1"; gene_id "2L+_file_1_file_1_g27"; +2L AUGUSTUS CDS 232575 233154 1 + 0 transcript_id "2L+_file_1_file_1_g27.t1"; gene_id "2L+_file_1_file_1_g27"; +2L AUGUSTUS exon 232575 233154 . + . transcript_id "2L+_file_1_file_1_g27.t1"; gene_id "2L+_file_1_file_1_g27"; +2L AUGUSTUS intron 233155 233216 1 + . transcript_id "2L+_file_1_file_1_g27.t1"; gene_id "2L+_file_1_file_1_g27"; +2L AUGUSTUS CDS 233217 233965 1 + 2 transcript_id "2L+_file_1_file_1_g27.t1"; gene_id "2L+_file_1_file_1_g27"; +2L AUGUSTUS exon 233217 233965 . + . transcript_id "2L+_file_1_file_1_g27.t1"; gene_id "2L+_file_1_file_1_g27"; +2L AUGUSTUS stop_codon 233963 233965 . + 0 transcript_id "2L+_file_1_file_1_g27.t1"; gene_id "2L+_file_1_file_1_g27"; +2L AUGUSTUS stop_codon 233993 233995 . - 0 transcript_id "2L-_file_1_file_1_g28.t1"; gene_id "2L-_file_1_file_1_g28"; +2L AUGUSTUS CDS 233993 234174 1 - 2 transcript_id "2L-_file_1_file_1_g28.t1"; gene_id "2L-_file_1_file_1_g28"; +2L AUGUSTUS exon 233993 234174 . - . transcript_id "2L-_file_1_file_1_g28.t1"; gene_id "2L-_file_1_file_1_g28"; +2L AUGUSTUS intron 234175 234236 1 - . transcript_id "2L-_file_1_file_1_g28.t1"; gene_id "2L-_file_1_file_1_g28"; +2L AUGUSTUS CDS 234237 242143 0.74 - 1 transcript_id "2L-_file_1_file_1_g28.t1"; gene_id "2L-_file_1_file_1_g28"; +2L AUGUSTUS exon 234237 242143 . - . transcript_id "2L-_file_1_file_1_g28.t1"; gene_id "2L-_file_1_file_1_g28"; +2L AUGUSTUS intron 242144 242243 0.5 - . transcript_id "2L-_file_1_file_1_g28.t1"; gene_id "2L-_file_1_file_1_g28"; +2L AUGUSTUS CDS 242244 242287 0.35 - 0 transcript_id "2L-_file_1_file_1_g28.t1"; gene_id "2L-_file_1_file_1_g28"; +2L AUGUSTUS exon 242244 242287 . - . transcript_id "2L-_file_1_file_1_g28.t1"; gene_id "2L-_file_1_file_1_g28"; +2L AUGUSTUS start_codon 242285 242287 . - 0 transcript_id "2L-_file_1_file_1_g28.t1"; gene_id "2L-_file_1_file_1_g28"; +2L AUGUSTUS stop_codon 251194 251196 . - 0 transcript_id "2L-_file_1_file_1_g29.t1"; gene_id "2L-_file_1_file_1_g29"; +2L AUGUSTUS CDS 251194 251464 1 - 1 transcript_id "2L-_file_1_file_1_g29.t1"; gene_id "2L-_file_1_file_1_g29"; +2L AUGUSTUS exon 251194 251464 . - . transcript_id "2L-_file_1_file_1_g29.t1"; gene_id "2L-_file_1_file_1_g29"; +2L AUGUSTUS intron 251465 251526 1 - . transcript_id "2L-_file_1_file_1_g29.t1"; gene_id "2L-_file_1_file_1_g29"; +2L AUGUSTUS CDS 251527 251801 1 - 0 transcript_id "2L-_file_1_file_1_g29.t1"; gene_id "2L-_file_1_file_1_g29"; +2L AUGUSTUS exon 251527 251801 . - . transcript_id "2L-_file_1_file_1_g29.t1"; gene_id "2L-_file_1_file_1_g29"; +2L AUGUSTUS intron 251802 251855 1 - . transcript_id "2L-_file_1_file_1_g29.t1"; gene_id "2L-_file_1_file_1_g29"; +2L AUGUSTUS CDS 251856 251924 1 - 0 transcript_id "2L-_file_1_file_1_g29.t1"; gene_id "2L-_file_1_file_1_g29"; +2L AUGUSTUS exon 251856 251924 . - . transcript_id "2L-_file_1_file_1_g29.t1"; gene_id "2L-_file_1_file_1_g29"; +2L AUGUSTUS intron 251925 251978 1 - . transcript_id "2L-_file_1_file_1_g29.t1"; gene_id "2L-_file_1_file_1_g29"; +2L AUGUSTUS CDS 251979 252166 1 - 2 transcript_id "2L-_file_1_file_1_g29.t1"; gene_id "2L-_file_1_file_1_g29"; +2L AUGUSTUS exon 251979 252166 . - . transcript_id "2L-_file_1_file_1_g29.t1"; gene_id "2L-_file_1_file_1_g29"; +2L AUGUSTUS intron 252167 252226 1 - . transcript_id "2L-_file_1_file_1_g29.t1"; gene_id "2L-_file_1_file_1_g29"; +2L AUGUSTUS CDS 252227 252317 1 - 0 transcript_id "2L-_file_1_file_1_g29.t1"; gene_id "2L-_file_1_file_1_g29"; +2L AUGUSTUS exon 252227 252317 . - . transcript_id "2L-_file_1_file_1_g29.t1"; gene_id "2L-_file_1_file_1_g29"; +2L AUGUSTUS start_codon 252315 252317 . - 0 transcript_id "2L-_file_1_file_1_g29.t1"; gene_id "2L-_file_1_file_1_g29"; +2L AUGUSTUS stop_codon 252663 252665 . - 0 transcript_id "2L-_file_1_file_1_g30.t1"; gene_id "2L-_file_1_file_1_g30"; +2L AUGUSTUS CDS 252663 253145 1 - 0 transcript_id "2L-_file_1_file_1_g30.t1"; gene_id "2L-_file_1_file_1_g30"; +2L AUGUSTUS exon 252663 253145 . - . transcript_id "2L-_file_1_file_1_g30.t1"; gene_id "2L-_file_1_file_1_g30"; +2L AUGUSTUS intron 253146 253219 1 - . transcript_id "2L-_file_1_file_1_g30.t1"; gene_id "2L-_file_1_file_1_g30"; +2L AUGUSTUS CDS 253220 253385 1 - 1 transcript_id "2L-_file_1_file_1_g30.t1"; gene_id "2L-_file_1_file_1_g30"; +2L AUGUSTUS exon 253220 253385 . - . transcript_id "2L-_file_1_file_1_g30.t1"; gene_id "2L-_file_1_file_1_g30"; +2L AUGUSTUS intron 253386 253445 1 - . transcript_id "2L-_file_1_file_1_g30.t1"; gene_id "2L-_file_1_file_1_g30"; +2L AUGUSTUS CDS 253446 253890 1 - 2 transcript_id "2L-_file_1_file_1_g30.t1"; gene_id "2L-_file_1_file_1_g30"; +2L AUGUSTUS exon 253446 253890 . - . transcript_id "2L-_file_1_file_1_g30.t1"; gene_id "2L-_file_1_file_1_g30"; +2L AUGUSTUS intron 253891 253955 1 - . transcript_id "2L-_file_1_file_1_g30.t1"; gene_id "2L-_file_1_file_1_g30"; +2L AUGUSTUS CDS 253956 254379 1 - 0 transcript_id "2L-_file_1_file_1_g30.t1"; gene_id "2L-_file_1_file_1_g30"; +2L AUGUSTUS exon 253956 254379 . - . transcript_id "2L-_file_1_file_1_g30.t1"; gene_id "2L-_file_1_file_1_g30"; +2L AUGUSTUS start_codon 254377 254379 . - 0 transcript_id "2L-_file_1_file_1_g30.t1"; gene_id "2L-_file_1_file_1_g30"; +2L AUGUSTUS stop_codon 263782 263784 . - 0 transcript_id "2L-_file_1_file_1_g31.t1"; gene_id "2L-_file_1_file_1_g31"; +2L AUGUSTUS CDS 263782 266688 1 - 0 transcript_id "2L-_file_1_file_1_g31.t1"; gene_id "2L-_file_1_file_1_g31"; +2L AUGUSTUS exon 263782 266688 . - . transcript_id "2L-_file_1_file_1_g31.t1"; gene_id "2L-_file_1_file_1_g31"; +2L AUGUSTUS start_codon 266686 266688 . - 0 transcript_id "2L-_file_1_file_1_g31.t1"; gene_id "2L-_file_1_file_1_g31"; +2L AUGUSTUS start_codon 269192 269194 . + 0 transcript_id "2L+_file_1_file_1_g32.t1"; gene_id "2L+_file_1_file_1_g32"; +2L AUGUSTUS CDS 269192 269389 1 + 0 transcript_id "2L+_file_1_file_1_g32.t1"; gene_id "2L+_file_1_file_1_g32"; +2L AUGUSTUS exon 269192 269389 . + . transcript_id "2L+_file_1_file_1_g32.t1"; gene_id "2L+_file_1_file_1_g32"; +2L AUGUSTUS intron 269390 269457 1 + . transcript_id "2L+_file_1_file_1_g32.t1"; gene_id "2L+_file_1_file_1_g32"; +2L AUGUSTUS CDS 269458 270606 1 + 0 transcript_id "2L+_file_1_file_1_g32.t1"; gene_id "2L+_file_1_file_1_g32"; +2L AUGUSTUS exon 269458 270606 . + . transcript_id "2L+_file_1_file_1_g32.t1"; gene_id "2L+_file_1_file_1_g32"; +2L AUGUSTUS intron 270607 270660 1 + . transcript_id "2L+_file_1_file_1_g32.t1"; gene_id "2L+_file_1_file_1_g32"; +2L AUGUSTUS CDS 270661 271314 1 + 0 transcript_id "2L+_file_1_file_1_g32.t1"; gene_id "2L+_file_1_file_1_g32"; +2L AUGUSTUS exon 270661 271314 . + . transcript_id "2L+_file_1_file_1_g32.t1"; gene_id "2L+_file_1_file_1_g32"; +2L AUGUSTUS stop_codon 271312 271314 . + 0 transcript_id "2L+_file_1_file_1_g32.t1"; gene_id "2L+_file_1_file_1_g32"; +2L AUGUSTUS stop_codon 271967 271969 . - 0 transcript_id "2L-_file_1_file_1_g33.t1"; gene_id "2L-_file_1_file_1_g33"; +2L AUGUSTUS CDS 271967 272506 1 - 0 transcript_id "2L-_file_1_file_1_g33.t1"; gene_id "2L-_file_1_file_1_g33"; +2L AUGUSTUS exon 271967 272506 . - . transcript_id "2L-_file_1_file_1_g33.t1"; gene_id "2L-_file_1_file_1_g33"; +2L AUGUSTUS intron 272507 272554 1 - . transcript_id "2L-_file_1_file_1_g33.t1"; gene_id "2L-_file_1_file_1_g33"; +2L AUGUSTUS CDS 272555 273634 1 - 0 transcript_id "2L-_file_1_file_1_g33.t1"; gene_id "2L-_file_1_file_1_g33"; +2L AUGUSTUS exon 272555 273634 . - . transcript_id "2L-_file_1_file_1_g33.t1"; gene_id "2L-_file_1_file_1_g33"; +2L AUGUSTUS start_codon 273632 273634 . - 0 transcript_id "2L-_file_1_file_1_g33.t1"; gene_id "2L-_file_1_file_1_g33"; +2L AUGUSTUS start_codon 273986 273988 . + 0 transcript_id "2L+_file_1_file_1_g34.t1"; gene_id "2L+_file_1_file_1_g34"; +2L AUGUSTUS CDS 273986 274651 0.99 + 0 transcript_id "2L+_file_1_file_1_g34.t1"; gene_id "2L+_file_1_file_1_g34"; +2L AUGUSTUS exon 273986 274651 . + . transcript_id "2L+_file_1_file_1_g34.t1"; gene_id "2L+_file_1_file_1_g34"; +2L AUGUSTUS stop_codon 274649 274651 . + 0 transcript_id "2L+_file_1_file_1_g34.t1"; gene_id "2L+_file_1_file_1_g34"; +2L AUGUSTUS stop_codon 274947 274949 . - 0 transcript_id "2L-_file_1_file_1_g35.t1"; gene_id "2L-_file_1_file_1_g35"; +2L AUGUSTUS stop_codon 274947 274949 . - 0 transcript_id "2L-_file_1_file_1_g35.t2"; gene_id "2L-_file_1_file_1_g35"; +2L AUGUSTUS CDS 274947 275251 1 - 2 transcript_id "2L-_file_1_file_1_g35.t1"; gene_id "2L-_file_1_file_1_g35"; +2L AUGUSTUS CDS 274947 275251 1 - 2 transcript_id "2L-_file_1_file_1_g35.t2"; gene_id "2L-_file_1_file_1_g35"; +2L AUGUSTUS exon 274947 275251 . - . transcript_id "2L-_file_1_file_1_g35.t1"; gene_id "2L-_file_1_file_1_g35"; +2L AUGUSTUS exon 274947 275251 . - . transcript_id "2L-_file_1_file_1_g35.t2"; gene_id "2L-_file_1_file_1_g35"; +2L AUGUSTUS intron 275252 275318 1 - . transcript_id "2L-_file_1_file_1_g35.t1"; gene_id "2L-_file_1_file_1_g35"; +2L AUGUSTUS intron 275252 275318 1 - . transcript_id "2L-_file_1_file_1_g35.t2"; gene_id "2L-_file_1_file_1_g35"; +2L AUGUSTUS CDS 275319 276497 1 - 2 transcript_id "2L-_file_1_file_1_g35.t1"; gene_id "2L-_file_1_file_1_g35"; +2L AUGUSTUS CDS 275319 276497 1 - 2 transcript_id "2L-_file_1_file_1_g35.t2"; gene_id "2L-_file_1_file_1_g35"; +2L AUGUSTUS exon 275319 276497 . - . transcript_id "2L-_file_1_file_1_g35.t1"; gene_id "2L-_file_1_file_1_g35"; +2L AUGUSTUS exon 275319 276497 . - . transcript_id "2L-_file_1_file_1_g35.t2"; gene_id "2L-_file_1_file_1_g35"; +2L AUGUSTUS intron 276498 276738 1 - . transcript_id "2L-_file_1_file_1_g35.t1"; gene_id "2L-_file_1_file_1_g35"; +2L AUGUSTUS intron 276498 276738 1 - . transcript_id "2L-_file_1_file_1_g35.t2"; gene_id "2L-_file_1_file_1_g35"; +2L AUGUSTUS CDS 276739 276903 1 - 2 transcript_id "2L-_file_1_file_1_g35.t1"; gene_id "2L-_file_1_file_1_g35"; +2L AUGUSTUS CDS 276739 276903 1 - 2 transcript_id "2L-_file_1_file_1_g35.t2"; gene_id "2L-_file_1_file_1_g35"; +2L AUGUSTUS exon 276739 276903 . - . transcript_id "2L-_file_1_file_1_g35.t1"; gene_id "2L-_file_1_file_1_g35"; +2L AUGUSTUS exon 276739 276903 . - . transcript_id "2L-_file_1_file_1_g35.t2"; gene_id "2L-_file_1_file_1_g35"; +2L AUGUSTUS intron 276904 276958 0.99 - . transcript_id "2L-_file_1_file_1_g35.t2"; gene_id "2L-_file_1_file_1_g35"; +2L AUGUSTUS intron 276904 276973 1 - . transcript_id "2L-_file_1_file_1_g35.t1"; gene_id "2L-_file_1_file_1_g35"; +2L AUGUSTUS CDS 276959 277142 0.99 - 0 transcript_id "2L-_file_1_file_1_g35.t2"; gene_id "2L-_file_1_file_1_g35"; +2L AUGUSTUS exon 276959 277142 . - . transcript_id "2L-_file_1_file_1_g35.t2"; gene_id "2L-_file_1_file_1_g35"; +2L AUGUSTUS CDS 276974 277142 1 - 0 transcript_id "2L-_file_1_file_1_g35.t1"; gene_id "2L-_file_1_file_1_g35"; +2L AUGUSTUS exon 276974 277142 . - . transcript_id "2L-_file_1_file_1_g35.t1"; gene_id "2L-_file_1_file_1_g35"; +2L AUGUSTUS start_codon 277140 277142 . - 0 transcript_id "2L-_file_1_file_1_g35.t1"; gene_id "2L-_file_1_file_1_g35"; +2L AUGUSTUS start_codon 277140 277142 . - 0 transcript_id "2L-_file_1_file_1_g35.t2"; gene_id "2L-_file_1_file_1_g35"; +2L AUGUSTUS start_codon 277826 277828 . + 0 transcript_id "2L+_file_1_file_1_g36.t1"; gene_id "2L+_file_1_file_1_g36"; +2L AUGUSTUS CDS 277826 277863 1 + 0 transcript_id "2L+_file_1_file_1_g36.t1"; gene_id "2L+_file_1_file_1_g36"; +2L AUGUSTUS exon 277826 277863 . + . transcript_id "2L+_file_1_file_1_g36.t1"; gene_id "2L+_file_1_file_1_g36"; +2L AUGUSTUS intron 277864 277929 1 + . transcript_id "2L+_file_1_file_1_g36.t1"; gene_id "2L+_file_1_file_1_g36"; +2L AUGUSTUS CDS 277930 278323 1 + 1 transcript_id "2L+_file_1_file_1_g36.t1"; gene_id "2L+_file_1_file_1_g36"; +2L AUGUSTUS exon 277930 278323 . + . transcript_id "2L+_file_1_file_1_g36.t1"; gene_id "2L+_file_1_file_1_g36"; +2L AUGUSTUS intron 278324 278642 1 + . transcript_id "2L+_file_1_file_1_g36.t1"; gene_id "2L+_file_1_file_1_g36"; +2L AUGUSTUS CDS 278643 279124 1 + 0 transcript_id "2L+_file_1_file_1_g36.t1"; gene_id "2L+_file_1_file_1_g36"; +2L AUGUSTUS exon 278643 279124 . + . transcript_id "2L+_file_1_file_1_g36.t1"; gene_id "2L+_file_1_file_1_g36"; +2L AUGUSTUS intron 279125 279184 1 + . transcript_id "2L+_file_1_file_1_g36.t1"; gene_id "2L+_file_1_file_1_g36"; +2L AUGUSTUS CDS 279185 279805 1 + 1 transcript_id "2L+_file_1_file_1_g36.t1"; gene_id "2L+_file_1_file_1_g36"; +2L AUGUSTUS exon 279185 279805 . + . transcript_id "2L+_file_1_file_1_g36.t1"; gene_id "2L+_file_1_file_1_g36"; +2L AUGUSTUS intron 279806 279869 1 + . transcript_id "2L+_file_1_file_1_g36.t1"; gene_id "2L+_file_1_file_1_g36"; +2L AUGUSTUS CDS 279870 280040 1 + 1 transcript_id "2L+_file_1_file_1_g36.t1"; gene_id "2L+_file_1_file_1_g36"; +2L AUGUSTUS exon 279870 280040 . + . transcript_id "2L+_file_1_file_1_g36.t1"; gene_id "2L+_file_1_file_1_g36"; +2L AUGUSTUS intron 280041 280109 1 + . transcript_id "2L+_file_1_file_1_g36.t1"; gene_id "2L+_file_1_file_1_g36"; +2L AUGUSTUS CDS 280110 281514 1 + 1 transcript_id "2L+_file_1_file_1_g36.t1"; gene_id "2L+_file_1_file_1_g36"; +2L AUGUSTUS exon 280110 281514 . + . transcript_id "2L+_file_1_file_1_g36.t1"; gene_id "2L+_file_1_file_1_g36"; +2L AUGUSTUS stop_codon 281512 281514 . + 0 transcript_id "2L+_file_1_file_1_g36.t1"; gene_id "2L+_file_1_file_1_g36"; +2L AUGUSTUS stop_codon 282172 282174 . - 0 transcript_id "2L-_file_1_file_1_g37.t1"; gene_id "2L-_file_1_file_1_g37"; +2L AUGUSTUS CDS 282172 282505 1 - 1 transcript_id "2L-_file_1_file_1_g37.t1"; gene_id "2L-_file_1_file_1_g37"; +2L AUGUSTUS exon 282172 282505 . - . transcript_id "2L-_file_1_file_1_g37.t1"; gene_id "2L-_file_1_file_1_g37"; +2L AUGUSTUS intron 282506 282653 1 - . transcript_id "2L-_file_1_file_1_g37.t1"; gene_id "2L-_file_1_file_1_g37"; +2L AUGUSTUS CDS 282654 283147 1 - 0 transcript_id "2L-_file_1_file_1_g37.t1"; gene_id "2L-_file_1_file_1_g37"; +2L AUGUSTUS exon 282654 283147 . - . transcript_id "2L-_file_1_file_1_g37.t1"; gene_id "2L-_file_1_file_1_g37"; +2L AUGUSTUS start_codon 283145 283147 . - 0 transcript_id "2L-_file_1_file_1_g37.t1"; gene_id "2L-_file_1_file_1_g37"; +2L AUGUSTUS stop_codon 283886 283888 . - 0 transcript_id "2L-_file_1_file_1_g38.t1"; gene_id "2L-_file_1_file_1_g38"; +2L AUGUSTUS CDS 283886 284210 1 - 1 transcript_id "2L-_file_1_file_1_g38.t1"; gene_id "2L-_file_1_file_1_g38"; +2L AUGUSTUS exon 283886 284210 . - . transcript_id "2L-_file_1_file_1_g38.t1"; gene_id "2L-_file_1_file_1_g38"; +2L AUGUSTUS intron 284211 284747 1 - . transcript_id "2L-_file_1_file_1_g38.t1"; gene_id "2L-_file_1_file_1_g38"; +2L AUGUSTUS CDS 284748 284968 1 - 0 transcript_id "2L-_file_1_file_1_g38.t1"; gene_id "2L-_file_1_file_1_g38"; +2L AUGUSTUS exon 284748 284968 . - . transcript_id "2L-_file_1_file_1_g38.t1"; gene_id "2L-_file_1_file_1_g38"; +2L AUGUSTUS intron 284969 285432 1 - . transcript_id "2L-_file_1_file_1_g38.t1"; gene_id "2L-_file_1_file_1_g38"; +2L AUGUSTUS CDS 285433 285633 1 - 0 transcript_id "2L-_file_1_file_1_g38.t1"; gene_id "2L-_file_1_file_1_g38"; +2L AUGUSTUS exon 285433 285633 . - . transcript_id "2L-_file_1_file_1_g38.t1"; gene_id "2L-_file_1_file_1_g38"; +2L AUGUSTUS start_codon 285631 285633 . - 0 transcript_id "2L-_file_1_file_1_g38.t1"; gene_id "2L-_file_1_file_1_g38"; +2L AUGUSTUS stop_codon 286155 286157 . - 0 transcript_id "2L-_file_1_file_1_g39.t1"; gene_id "2L-_file_1_file_1_g39"; +2L AUGUSTUS CDS 286155 286178 0.63 - 0 transcript_id "2L-_file_1_file_1_g39.t1"; gene_id "2L-_file_1_file_1_g39"; +2L AUGUSTUS exon 286155 286178 . - . transcript_id "2L-_file_1_file_1_g39.t1"; gene_id "2L-_file_1_file_1_g39"; +2L AUGUSTUS intron 286179 286306 0.63 - . transcript_id "2L-_file_1_file_1_g39.t1"; gene_id "2L-_file_1_file_1_g39"; +2L AUGUSTUS CDS 286307 286498 0.65 - 0 transcript_id "2L-_file_1_file_1_g39.t1"; gene_id "2L-_file_1_file_1_g39"; +2L AUGUSTUS exon 286307 286498 . - . transcript_id "2L-_file_1_file_1_g39.t1"; gene_id "2L-_file_1_file_1_g39"; +2L AUGUSTUS start_codon 286496 286498 . - 0 transcript_id "2L-_file_1_file_1_g39.t1"; gene_id "2L-_file_1_file_1_g39"; +2L AUGUSTUS stop_codon 287402 287404 . - 0 transcript_id "2L-_file_1_file_1_g40.t1"; gene_id "2L-_file_1_file_1_g40"; +2L AUGUSTUS CDS 287402 288919 1 - 0 transcript_id "2L-_file_1_file_1_g40.t1"; gene_id "2L-_file_1_file_1_g40"; +2L AUGUSTUS exon 287402 288919 . - . transcript_id "2L-_file_1_file_1_g40.t1"; gene_id "2L-_file_1_file_1_g40"; +2L AUGUSTUS start_codon 288917 288919 . - 0 transcript_id "2L-_file_1_file_1_g40.t1"; gene_id "2L-_file_1_file_1_g40"; +2L AUGUSTUS stop_codon 290804 290806 . - 0 transcript_id "2L-_file_1_file_1_g41.t1"; gene_id "2L-_file_1_file_1_g41"; +2L AUGUSTUS CDS 290804 291010 0.97 - 0 transcript_id "2L-_file_1_file_1_g41.t1"; gene_id "2L-_file_1_file_1_g41"; +2L AUGUSTUS exon 290804 291010 . - . transcript_id "2L-_file_1_file_1_g41.t1"; gene_id "2L-_file_1_file_1_g41"; +2L AUGUSTUS start_codon 291008 291010 . - 0 transcript_id "2L-_file_1_file_1_g41.t1"; gene_id "2L-_file_1_file_1_g41"; +2L AUGUSTUS start_codon 292569 292571 . + 0 transcript_id "2L+_file_1_file_1_g42.t1"; gene_id "2L+_file_1_file_1_g42"; +2L AUGUSTUS CDS 292569 292660 1 + 0 transcript_id "2L+_file_1_file_1_g42.t1"; gene_id "2L+_file_1_file_1_g42"; +2L AUGUSTUS exon 292569 292660 . + . transcript_id "2L+_file_1_file_1_g42.t1"; gene_id "2L+_file_1_file_1_g42"; +2L AUGUSTUS intron 292661 292716 1 + . transcript_id "2L+_file_1_file_1_g42.t1"; gene_id "2L+_file_1_file_1_g42"; +2L AUGUSTUS CDS 292717 293002 1 + 1 transcript_id "2L+_file_1_file_1_g42.t1"; gene_id "2L+_file_1_file_1_g42"; +2L AUGUSTUS exon 292717 293002 . + . transcript_id "2L+_file_1_file_1_g42.t1"; gene_id "2L+_file_1_file_1_g42"; +2L AUGUSTUS stop_codon 293000 293002 . + 0 transcript_id "2L+_file_1_file_1_g42.t1"; gene_id "2L+_file_1_file_1_g42"; +2L AUGUSTUS stop_codon 293622 293624 . - 0 transcript_id "2L-_file_1_file_1_g43.t1"; gene_id "2L-_file_1_file_1_g43"; +2L AUGUSTUS CDS 293622 294372 1 - 1 transcript_id "2L-_file_1_file_1_g43.t1"; gene_id "2L-_file_1_file_1_g43"; +2L AUGUSTUS exon 293622 294372 . - . transcript_id "2L-_file_1_file_1_g43.t1"; gene_id "2L-_file_1_file_1_g43"; +2L AUGUSTUS intron 294373 294440 1 - . transcript_id "2L-_file_1_file_1_g43.t1"; gene_id "2L-_file_1_file_1_g43"; +2L AUGUSTUS CDS 294441 294484 1 - 0 transcript_id "2L-_file_1_file_1_g43.t1"; gene_id "2L-_file_1_file_1_g43"; +2L AUGUSTUS exon 294441 294484 . - . transcript_id "2L-_file_1_file_1_g43.t1"; gene_id "2L-_file_1_file_1_g43"; +2L AUGUSTUS start_codon 294482 294484 . - 0 transcript_id "2L-_file_1_file_1_g43.t1"; gene_id "2L-_file_1_file_1_g43";