Help build MPI version #38
Description
Hello,
I am trying to build MAPGD (version 0.4.38) on a system with IntelMPI (Version 2018 Update 4) and gcc (version 4.9.3). I get the following error:
mpi/mpi_relatedness.cc:178:47: error: ‘get_95CI’ was not declared in this scope
In more details:
g++ -std=c++11 -g -O2 -DVERSION=\"0.4.39\" -Wno-write-strings -fno-exceptions -pedantic -I ./ -I ./data_types/ -I ./commands/ -I ./raw/ -I ./data_conversion/ -I ./gzstream/ -I ./stream_tools/ -I ./io/ -I ./math_functions/ -I ./system/ -I ./mpi -I ./sql -fopenmp -DUSE_MAN -DDOCPATH=\"/home/test/MAPGD/0.4.38/share/doc/mapgd\" -DMANPATH=\"/home/test/MAPGD/0.4.38/share/doc/mapgd/man\" -DPATH=\"/home/test/MAPGD/0.4.38/share/mapgd\" -DPWD=\"`pwd`\" -DNOHTS -DNOLZ4 -I ./ -I ./data_types/ -I ./commands/ -I ./raw/ -I ./data_conversion/ -I ./gzstream/ -I ./stream_tools/ -I ./io/ -I ./math_functions/ -I ./system/ -I ./mpi -I ./sql -c -o objs/system.o system/system.cc
mpicxx -std=c++11 -g -O2 -DVERSION=\"0.4.39\" -Wno-write-strings -fno-exceptions -pedantic -I ./ -I ./data_types/ -I ./commands/ -I ./raw/ -I ./data_conversion/ -I ./gzstream/ -I ./stream_tools/ -I ./io/ -I ./math_functions/ -I ./system/ -I ./mpi -I ./sql -fopenmp -DUSE_MAN -DDOCPATH=\"/home/test/MAPGD/0.4.38/share/doc/mapgd\" -DMANPATH=\"/home/test/MAPGD/0.4.38/share/doc/mapgd/man\" -DPATH=\"/home/test/MAPGD/0.4.38/share/mapgd\" -DPWD=\"`pwd`\" -DNOHTS -DNOLZ4 -I ./ -I ./data_types/ -I ./commands/ -I ./raw/ -I ./data_conversion/ -I ./gzstream/ -I ./stream_tools/ -I ./io/ -I ./math_functions/ -I ./system/ -I ./mpi -I ./sql -c -o objs/mpi_relatedness.o mpi/mpi_relatedness.cc
mpi/mpi_relatedness.cc: In function ‘int estimateRel(int, char**)’:
mpi/mpi_relatedness.cc:171:59: error: too few arguments to function ‘std::map<std::tuple<float, float, float, float, float, float, float>, long unsigned int> hash_genotypes(const stringstream&, const size_t&, const size_t&, const bool&, const bool&)’
hashed_genotypes=hash_genotypes(file_buffer, x, y, l2o);
^
In file included from mpi/mpi_relatedness.h:6:0,
from mpi/mpi_relatedness.cc:1:
./commands/relatedness.h:44:1: note: declared here
hash_genotypes (const std::stringstream &, const size_t &, const size_t &, const bool &, const bool &);
^
mpi/mpi_relatedness.cc:178:47: error: ‘get_95CI’ was not declared in this scope
get_95CI(relatedness, hashed_genotypes);
^
make[2]: *** [objs/mpi_relatedness.o] Error 1
make[2]: Leaving directory `/home/test/MAPGD-master/src/mapgd_0.4'
make[1]: *** [mapgd_0.4] Error 2
make[1]: Leaving directory `/home/test/MAPGD-master/src'
make: *** [src] Error 2
Indeed get_95CI does not appear to be declared in mpi_relatedness.cc:
$ grep -R get_95CI *
IDRE_make.log:mpi/mpi_relatedness.cc:178:47: error: ‘get_95CI’ was not declared in this scope
IDRE_make.log: get_95CI(relatedness, hashed_genotypes);
src/mapgd_0.4/commands/relatedness.cc:get_95CI(Relatedness &rel, std::map <Genotype_pair_tuple, size_t> hashed_genotypes)
src/mapgd_0.4/commands/relatedness.cc: if (relatedness.success_) get_95CI(relatedness, hashed_genotypes);
src/mapgd_0.4/mpi/mpi_relatedness.cc: get_95CI(relatedness, hashed_genotypes);
Binary file src/mapgd_0.4/objs/relatedness.o matches
Any idea?
Thanks!
RD