IndexError: string index out of range error for sequences

[aishsk87]

Hi
I am running the deepRAM as follows
python deepRAM.py --train_data CLIP_train.gz --test_data CLIP_test.gz --data_type RNA --train True --evaluate_performance True --model_path DeepBind.pkl --out_file prediction.txt --Embedding False --Conv True --RNN False --conv_layers 1

and my training and testing files are :
Clip_test.gz
Clip_train.gz

I get the following error when I run it:
python deepRAM.py --train_data Clip_train.gz --test_data Clip_test.gz --data_type RNA --train True --evaluate_performance True --model_path DeepBind.pkl --out_file prediction.txt --Embedding False --Conv True --RNN False --conv_layers 2
cuda:0
False
Load Data
Traceback (most recent call last):
File "deepRAM.py", line 982, in
main()
File "deepRAM.py", line 980, in main
run_deepRAM(args)
File "deepRAM.py", line 896, in run_deepRAM
Load_Data(train_data,test_data)
File "deepRAM.py", line 473, in Load_Data
train1,valid1,train2,valid2,train3,valid3,alldataset,sequences=chipseq.openFile()
File "deepRAM.py", line 318, in openFile
train_dataset.append([seqtopad(row[0],self.motiflen),[int(row[1])]])
File "deepRAM.py", line 36, in seqtopad
if i-motlen+1<len(sequence) and sequence[i-motlen+1]=='N' or ilen(sequence)+motlen-2:
IndexError: string index out of range

I am not sure if the sequence length should be greater than or less than a specific length. Thanks in advance.