Erros [...] CohortGenerator requires the following columns in the settings file: "cohortId", "cohortName".

[lhjohn]

Seeing this error with a prediction package. Seems to be some interaction with CohortGenerator.

Error in CohortGenerator::getCohortDefinitionSet(packageName = "EmcDementiaPredictionBase",  :                            
  Assertion on 'names(settings)' failed: CohortGenerator requires the following columns in the settings file: "cohortId", "cohortName". The following columns were found: "cohortname", "cohortid", "webapicohortid".
In addition: Warning message:
In readCsv(file = getPath(fileName = settingsFileName)) :

The actual file "Cohorts.csv" looks like this:

"cohortName","cohortId","webApiCohortId"
"[HJ] Dementia Prediction - 55-84y - v3","5920","5920"
"[HJ] Dementia (Phenotype February)","6243","6243"

[anthonysena]

Are you using CohortGenerator v0.5.0? If so, the readCsv will assume your column headings are in snake_case and convert to camelCase. Can you rename the columns in your settings file to "cohort_name", "cohort_id", "web_api_cohort_id" and see if that fixes it?

[lhjohn]

Thank you @anthonysena, that seems to have resolved the error. We probably will need to adjust that in the skeleton.

But now I am seeing this problem again: #28

[jreps]

Error #28 seems to be happening during the CohortGenerator functions and seems to be an issue with translating the SQL server code to Redshift