No method for coercing this S4 class to a vector

[JIBINJOHNV]

Could you please look in to the error. Details below

pac_master <- make_PAC(pheno=pheno, anno=NULL, counts=count_list$counts)
names(pac_master)
[1] "Pheno" "Anno" "Counts"

lapply(pac_master, head)
Error in as.list.default(X) :
no method for coercing this S4 class to a vector

[Danis102]

This problem is likely a result from the S4 updates that we did a few weeks ago. We have been struggling with this for a few day now and believe that it has been solved in the "Develpoment_210916" branch hat we will update "master" with soon. But for now you can use:

devtools::install_github("Danis102/seqpac", dependencies=TRUE, ref="Develpoment_210916")

This will install the new updated branch on your computer if you are having the devtools-package installed.

[Danis102]

Now we have updated the master branch with better S4 S3 compatibility. Please try the examples in ?as.PAC, ?as.reanno and ?PAC and ?reanno (manuals), to understand how to handle S3 and S4 in seqpac.