PAC_deseq error when using pheno_target

[Glfrey]

Hello,

I obtain the following error using pheno_target even when using the sample data:

> PAC_deseq(pac,model= ~stage + batch, pheno_target=list("batch"), threads=2)'

using pre-existing size factors estimating dispersions gene-wise dispersion estimates: 2 workers Error in h(simpleError(msg, call)) : error in evaluating the argument 'args' in selecting a method for function 'do.call': $ operator is invalid for atomic vectors
How can I work around this?

Thank you.

[Danis102]

Do you still encounter the same problem?

[Glfrey]

Hi @Danis102,

Yes I do. I actually had to stop using this pipeline and move to another (mirge3) as I couldn't move past this error. I would like to try SeqPac out however so it would be great if you had a work around.