multi-threading is not working

[lucacozzuto]

Dear authors,
I used multi-threading and I got only a few reads generated. While removing that option gives me no error. Also using -t 1 is generating an error.

Thanks,
Luca

[Psy-Fer]

Hello,

Could you please give me the full command you used, and with which version of the software, as well as any errors you are encountering.

Thanks,
James

ps @lpryszcz could you please keep an eye on this one :)

[lucacozzuto]

I'm using the image from @lpryszcz actually. The command line is the following

deeplexicon_sub.py dmux -f multi -m resnet20-final.h5 -t 1 -p ./ > pU---1_demux.tsv

[Psy-Fer]

Ahh, deeplexicon_sub.py doesn't have a -t for threads, but for a --test command.

please use deeplexicon_multi.py with --threads argument

[lucacozzuto]

Aha! Can I suggest changing this as well? This is a bit misleading :) Sorry for this but it took me a day to figure it out the problem :)

[lpryszcz]

I'm sorry Luca. I kept old version for back-compatibility (I guess older versions are still needed for training of the model). Everything is described in the README https://github.com/Psy-Fer/deeplexicon#source-and-install-requirements-gpu-experimental
@Psy-Fer could you please update the documentation accordingly (https://psy-fer.github.io/deeplexicon/)?

[Psy-Fer]

Yep,. I'm on break at the moment and will be back in the new year.
We can probably remove the test flag too so we can free up the -t argument for threads