I am using Illumina GSA-24v3-0 chip and have followed the tutorial to make the SNPTable.
When I try to run convert_bim.pl with -intype top (which I believe it is)
I get the Error:
invalid alleles found in BIM file (the -intype of 'top' indicates possible alleles as ACGT0): <0 rs111033319 0 0 0 D>