Error: can't undefined value as an ARRAY reference at detect_cnv.pl #121
Description
Hello!
For a few of my samples I keep getting this error message without it reporting any data:
NOTICE: All program notification/warning messages that appear in STDERR will be also written to log file Signals_Complete_Final/Complete_RawCNV-logs/206.log
NOTICE: Recalling CNVs for trio: Signals_Complete_Final/207166290026_R01C02 Signals_Complete_Final/207166290026_R02C02 Signals_Complete_Final/207166290026_R04C02
NOTICE: Reading marker coordinates and population frequency of B allele (PFB) from hg_38.pfb ... Done with 651801 records (1484742 records in chr 0,MT,XY were discarded)
NOTICE: Total of 112 CNV regions will be validated by family information (Signals_Complete_Final/207166290026_R01C02 Signals_Complete_Final/207166290026_R02C02 Signals_Complete_Final/207166290026_R04C02)
NOTICE: Reading LRR and BAF values for from Signals_Complete_Final/207166290026_R01C02 ... Done with 651801 records in 24 chromosomes (2226 records are discarded due to lack of PFB information for the markers)
NOTICE: Data from chromosome X,Y will not be used in analysis
NOTICE: Median-adjusting LRR values for all autosome markers from Signals_Complete_Final/207166290026_R01C02 by 0.0069
NOTICE: Median-adjusting BAF values for all autosome markers from Signals_Complete_Final/207166290026_R01C02 by -0.0031
NOTICE: quality summary for Signals_Complete_Final/207166290026_R01C02: LRR_mean=-0.0078 LRR_median=0.0000 LRR_SD=0.1091 BAF_mean=0.5015 BAF_median=0.5000 BAF_SD=0.0337 BAF_DRIFT=0.000055 WF=-0.0271 GCWF=-0.0239
Use of uninitialized value in subtraction (-) at detect_cnv.pl line 1843.
Use of uninitialized value in subtraction (-) at detect_cnv.pl line 1843.
Use of uninitialized value in string eq at detect_cnv.pl line 1849.
Use of uninitialized value in subtraction (-) at detect_cnv.pl line 1843.
Use of uninitialized value in subtraction (-) at detect_cnv.pl line 1843.
Use of uninitialized value in string eq at detect_cnv.pl line 1849.
Use of uninitialized value in subtraction (-) at detect_cnv.pl line 1843.
Use of uninitialized value in subtraction (-) at detect_cnv.pl line 1843.
Use of uninitialized value in string eq at detect_cnv.pl line 1849.
Can't use an undefined value as an ARRAY reference at detect_cnv.pl line 509.
Any suggestions?