When writing to stdout, run-bowtie.py can throw an error

[terrycojones]

$ run-bowtie2.py --reference reference.fasta --fastq1 fastq1.gz --fastq2 fastq2.gz > out
Traceback (most recent call last):
  File "/fast/work/projects/civ-diagnostics/packages/miniconda3/envs/310/bin/run-bowtie2.py", line 430, in <module>
    main()
  File "/fast/work/projects/civ-diagnostics/packages/miniconda3/envs/310/bin/run-bowtie2.py", line 416, in main
    processMatch(args, e)
  File "/fast/work/projects/civ-diagnostics/packages/miniconda3/envs/310/bin/run-bowtie2.py", line 168, in processMatch
    write(data)
TypeError: write() argument must be str, not bytes