error with running raxml

[Golnazthr]

Hi,

We are trying to run the VCF file with 61 mutations in nearly 300 cells with cellphy.
We get the following error:

raxml-ng-cellphy-linux: /home/alex/hits/raxml-ng/src/loadbalance/BenoitLoadBalancer.cpp:208: void kassian_phase2(BalancerState&): Assertion `s.remaining == 0' failed.

Could you please help us to solve the issue?

[amkozlov]

Hi @Golnazthr,

if possible, please send me your input file such that I can reproduce the problem.

For the time being, you can use a couple of simple workarounds:

1. Add -t 1 to the command line (your dataset is quite small, so should be still fast with 1 thread)
2. Modify the script and add --extra lb-naive at the end of this line:
   https://github.com/amkozlov/cellphy/blob/master/cellphy.sh#L181

[ugur0sahin]

I've still also same problem, even I've commited changes you said, would you help me please ?

[amkozlov]

Please post your command line, full log file and ideally your input files, then I will try to help.