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Description
READII-2-ROQC settings config
DATA_SOURCE: "TCIA"
DATASET_NAME: "RADCURE"
### CLINICAL VARIABLE INFORMATION ###
CLINICAL:
FILE: "RADCURE_Clinical_v04_20241219.xlsx"
OUTCOME_VARIABLES:
time_label: "Length FU"
event_label: "Status"
convert_to_years: False
event_value_mapping: {0: ['Alive'], 1: ['Dead']}
EXCLUSION_VARIABLES: {}
INCLUSION_VARIABLES: {'Ds Site': ['Oropharynx'],
'HPV': ['Yes, positive', 'Yes, Negative']
}Error:
File "/home/bhkuser/bhklab/katy/readii_2_roqc/.pixi/envs/default/lib/python3.13/site-packages/readii/process/label.py", line 252, in eventOutcomeColumnSetup
event_column_value_mapping = {status.lower():value for status, value in event_column_value_mapping.items()}
^^^^^^^^^^^^
AttributeError: 'int' object has no attribute 'lower'Have obviously mixed up whether the keys, values are event strings or numeric
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