From ff502268a312070b86c29ae07dce27e09c629fa3 Mon Sep 17 00:00:00 2001 From: Artur Lobanov Date: Wed, 19 Jun 2024 20:42:29 +0200 Subject: [PATCH 01/76] Create cron_job_runner.py --- l1macros/cron_job_runner.py | 139 ++++++++++++++++++++++++++++++++++++ 1 file changed, 139 insertions(+) create mode 100644 l1macros/cron_job_runner.py diff --git a/l1macros/cron_job_runner.py b/l1macros/cron_job_runner.py new file mode 100644 index 0000000..42a1b16 --- /dev/null +++ b/l1macros/cron_job_runner.py @@ -0,0 +1,139 @@ +#!/bin/python3 + +import os, sys, time, subprocess +from glob import glob + +path_prefix = "/eos/cms/tier0/store/data" + +config_dict = { + "JetMET" : # for JetMET plots + { + "datasets" : ["JetMET0","JetMET1"], + "eras" : ["Run2024E"], + # "campaigns" : ["Run2024D-PromptReco"], + "scripts": [ + "python3 performances_nano.py -i $INFILE -o $OUTDIR/all_DiJet.root -c DiJet", + "python3 ../plotting/make_DiJet_plots.py --dir $OUTDIR --config ../config_cards/full_DiJet.yaml", + ] + }, + "EGamma" : # for JetMET plots + { + "datasets" : ["EGamma0","EGamma1"], + "eras" : ["Run2024E"], + # "campaigns" : ["Run2024D-PromptReco"], + "scripts": [ + "python3 performances_nano.py -i $INFILE -o $OUTDIR/all_PhotonJet.root -c PhotonJet", + "python3 performances_nano.py -i $INFILE -o $OUTDIR/all_ZToEE.root -c ZToEE", + + ## OFF DQM + "python3 performances_nano_dqmoff.py -i $INFILE -o $OUTDIR/oug_zee_dqmoff.root -c ZToEEDQMOff", + ## Plot + "python3 ../plotting/make_ZToEE_plots.py --dir $OUTDIR --config ../config_cards/full_ZToEE.yaml", + "python3 ../plotting/make_PhotonJet_plots.py --dir $OUTDIR --config ../config_cards/full_PhotonJet.yaml", + ] + }, + "Muon" : # for JetMET plots + { + "datasets" : ["Muon0","Muon1"], + "eras" : ["Run2024E"], + # "campaigns" : ["Run2024D-PromptReco"], + + "scripts" : [ + "/bin/python3 performances_nano.py -i $INFILE -o $OUTDIR/all_ZToMuMu.root -c ZToMuMu", + "/bin/python3 performances_nano.py -i $INFILE -o $OUTDIR/all_MuonJet.root -c MuonJet", + "/bin/python3 performances_nano.py -i $INFILE -o $OUTDIR/all_ZToTauTau.root -c ZToTauTau ", + ## OFF DQM + "/bin/python3 performances_nano_dqmoff.py -i $INFILE -o $OUTDIR/out_zmumu_dqmoffl.root -c ZToMuMuDQMOff", + "/bin/python3 performances_nano_dqmoff.py -i $INFILE -o $OUTDIR/out_jets_dqmoff.root -c JetsDQMOff ", + "/bin/python3 performances_nano_dqmoff.py -i $INFILE -o $OUTDIR/out_ztautau_dqmoff.root -c ZToTauTauDQMOff", + "/bin/python3 performances_nano_dqmoff.py -i $INFILE -o $OUTDIR/out_zmumu_dqmoffl.root -c ZToMuMuDQMOff", + "/bin/python3 performances_nano_dqmoff.py -i $INFILE -o $OUTDIR/out_etsum_dqmoff.root -c EtSumDQMOff", + ## plotting + "/bin/python3 ../plotting/make_ZToMuMu_plots.py --dir $OUTDIR --config ../config_cards/full_ZToMuMu.yaml", + "/bin/python3 ../plotting/make_ZToTauTau_plots.py --dir $OUTDIR --config ../config_cards/full_ZToTauTau.yaml", + "/bin/python3 ../plotting/make_MuonJet_plots.py --dir $OUTDIR --config ../config_cards/full_MuonJet.yaml", + ] + } +} + + + + +import random + +for label, config in config_dict.items(): + print(80*"#") + print(80*"#") + print(f" Running plots for {label}") + print(80*"#") + + fnames = [] + for dataset in config["datasets"]: + for era in config["eras"]: + fnames += glob(f"{path_prefix}/{era}/{dataset}/NANOAOD/PromptReco-v*/*/*/*/*/*.root") + + + # print(fnames) + if len(fnames) > 0: + # do random choice for now + fname = random.choice(fnames) + + ## take the latest file from T0 eos + #fname = fnames[-1] + else: + exit(0) + + ## decode file path to run, era etc + fname_split = fname.split("/") + dataset = fname.split("/")[7] + run = int("".join(fname.split("/")[11:13])) + base_fname = fname.split("/")[-1].replace(".root","") + era = fname.split("/")[6] + reco_version = fname.split("/")[9] + + outdir = f"{era}/{dataset}/{reco_version}/{run}/{base_fname}" + + # check output exists + out_web_path = "/eos/home-a/alobanov/www/L1T/Run3/DQM/devAutoNanoNoSh/" + outdir + + if os.path.exists(out_web_path): + # out_web_path + "_1" + print("Output already exists!") + print(out_web_path) + exit(0) + else: + os.makedirs(out_web_path) + os.makedirs(out_web_path+"/plotsL1Run3") # for plots + ### Main part: run the performance code + + script_dir = "/afs/cern.ch/work/a/alobanov/L1T/run3/DQM/AutoFwk/l1macros/" + os.chdir(script_dir) + + for script in config["scripts"]: + print(80*"#") + print(80*"#") + print(script) + print(80*"#") + + + script = script.replace("$INFILE",fname).replace("$OUTDIR",out_web_path) + + print(f"Going to process {fname} and store output here: {out_web_path}") + #ret = subprocess.run([script_path, out_web_path, fname, ">> logs"],) + print(script.split(" ")) + if "/" in script.split(" ")[-1]: + log_fname = out_web_path + "/" + os.path.basename(script.split(" ")[-1])+".log" + else: + log_fname = out_web_path + "/" + script.split(" ")[-1]+".log" + print(f"Writing logs to {log_fname}") + with open(log_fname, "w") as f: + ret = subprocess.run( + #script.split(" "), + script, + shell = True, + stdout=f, + stderr=f + ) + + ### Hadd the outputs of a full run? + # break From 17b634fc16c0e79f5595b819a7a3b3dcbb4f3ff5 Mon Sep 17 00:00:00 2001 From: Artur Lobanov Date: Thu, 20 Jun 2024 16:26:14 +0200 Subject: [PATCH 02/76] Update cron_job_runner.py --- l1macros/cron_job_runner.py | 17 +++++------------ 1 file changed, 5 insertions(+), 12 deletions(-) diff --git a/l1macros/cron_job_runner.py b/l1macros/cron_job_runner.py index 42a1b16..f401bfb 100644 --- a/l1macros/cron_job_runner.py +++ b/l1macros/cron_job_runner.py @@ -9,8 +9,7 @@ "JetMET" : # for JetMET plots { "datasets" : ["JetMET0","JetMET1"], - "eras" : ["Run2024E"], - # "campaigns" : ["Run2024D-PromptReco"], + "eras" : ["Run2024*"], "scripts": [ "python3 performances_nano.py -i $INFILE -o $OUTDIR/all_DiJet.root -c DiJet", "python3 ../plotting/make_DiJet_plots.py --dir $OUTDIR --config ../config_cards/full_DiJet.yaml", @@ -19,8 +18,7 @@ "EGamma" : # for JetMET plots { "datasets" : ["EGamma0","EGamma1"], - "eras" : ["Run2024E"], - # "campaigns" : ["Run2024D-PromptReco"], + "eras" : ["Run2024*"], "scripts": [ "python3 performances_nano.py -i $INFILE -o $OUTDIR/all_PhotonJet.root -c PhotonJet", "python3 performances_nano.py -i $INFILE -o $OUTDIR/all_ZToEE.root -c ZToEE", @@ -35,9 +33,7 @@ "Muon" : # for JetMET plots { "datasets" : ["Muon0","Muon1"], - "eras" : ["Run2024E"], - # "campaigns" : ["Run2024D-PromptReco"], - + "eras" : ["Run2024*"], "scripts" : [ "/bin/python3 performances_nano.py -i $INFILE -o $OUTDIR/all_ZToMuMu.root -c ZToMuMu", "/bin/python3 performances_nano.py -i $INFILE -o $OUTDIR/all_MuonJet.root -c MuonJet", @@ -57,8 +53,6 @@ } - - import random for label, config in config_dict.items(): @@ -72,7 +66,6 @@ for era in config["eras"]: fnames += glob(f"{path_prefix}/{era}/{dataset}/NANOAOD/PromptReco-v*/*/*/*/*/*.root") - # print(fnames) if len(fnames) > 0: # do random choice for now @@ -94,7 +87,7 @@ outdir = f"{era}/{dataset}/{reco_version}/{run}/{base_fname}" # check output exists - out_web_path = "/eos/home-a/alobanov/www/L1T/Run3/DQM/devAutoNanoNoSh/" + outdir + out_web_path = "/eos/cms/store/group/dpg_trigger/comm_trigger/L1Trigger/cmsl1dpg/www/DQM/T0PromptNanoMonit/" + outdir if os.path.exists(out_web_path): # out_web_path + "_1" @@ -120,7 +113,7 @@ print(f"Going to process {fname} and store output here: {out_web_path}") #ret = subprocess.run([script_path, out_web_path, fname, ">> logs"],) - print(script.split(" ")) + # print(script.split(" ")) if "/" in script.split(" ")[-1]: log_fname = out_web_path + "/" + os.path.basename(script.split(" ")[-1])+".log" else: From 0d0aea3dd1c11efca2299db0b2082138a6ff4973 Mon Sep 17 00:00:00 2001 From: Artur Lobanov Date: Thu, 20 Jun 2024 16:53:37 +0200 Subject: [PATCH 03/76] Update cron_job_runner.py --- l1macros/cron_job_runner.py | 9 ++++----- 1 file changed, 4 insertions(+), 5 deletions(-) diff --git a/l1macros/cron_job_runner.py b/l1macros/cron_job_runner.py index f401bfb..807ce04 100644 --- a/l1macros/cron_job_runner.py +++ b/l1macros/cron_job_runner.py @@ -66,7 +66,7 @@ for era in config["eras"]: fnames += glob(f"{path_prefix}/{era}/{dataset}/NANOAOD/PromptReco-v*/*/*/*/*/*.root") - # print(fnames) + #print(fnames) if len(fnames) > 0: # do random choice for now fname = random.choice(fnames) @@ -74,7 +74,7 @@ ## take the latest file from T0 eos #fname = fnames[-1] else: - exit(0) + continue ## decode file path to run, era etc fname_split = fname.split("/") @@ -93,13 +93,13 @@ # out_web_path + "_1" print("Output already exists!") print(out_web_path) - exit(0) + continue else: os.makedirs(out_web_path) os.makedirs(out_web_path+"/plotsL1Run3") # for plots ### Main part: run the performance code - script_dir = "/afs/cern.ch/work/a/alobanov/L1T/run3/DQM/AutoFwk/l1macros/" + script_dir = "/eos/cms/store/group/dpg_trigger/comm_trigger/L1Trigger/cmsl1dpg/MacrosNtuples/l1macros" os.chdir(script_dir) for script in config["scripts"]: @@ -108,7 +108,6 @@ print(script) print(80*"#") - script = script.replace("$INFILE",fname).replace("$OUTDIR",out_web_path) print(f"Going to process {fname} and store output here: {out_web_path}") From dd3b21400743fdac1c95269155e9e8e5d29102ee Mon Sep 17 00:00:00 2001 From: LukasEbeling Date: Thu, 15 Aug 2024 12:54:01 +0200 Subject: [PATCH 04/76] file paths changed --- l1macros/cron_job_runner.py | 6 ++++-- 1 file changed, 4 insertions(+), 2 deletions(-) diff --git a/l1macros/cron_job_runner.py b/l1macros/cron_job_runner.py index 807ce04..7e99329 100644 --- a/l1macros/cron_job_runner.py +++ b/l1macros/cron_job_runner.py @@ -87,7 +87,8 @@ outdir = f"{era}/{dataset}/{reco_version}/{run}/{base_fname}" # check output exists - out_web_path = "/eos/cms/store/group/dpg_trigger/comm_trigger/L1Trigger/cmsl1dpg/www/DQM/T0PromptNanoMonit/" + outdir + #out_web_path = "/eos/cms/store/group/dpg_trigger/comm_trigger/L1Trigger/cmsl1dpg/www/DQM/T0PromptNanoMonit/" + outdir + out_web_path = "/eos/home-l/lebeling/www/DQM/" + outdir if os.path.exists(out_web_path): # out_web_path + "_1" @@ -99,7 +100,8 @@ os.makedirs(out_web_path+"/plotsL1Run3") # for plots ### Main part: run the performance code - script_dir = "/eos/cms/store/group/dpg_trigger/comm_trigger/L1Trigger/cmsl1dpg/MacrosNtuples/l1macros" + #script_dir = "/eos/cms/store/group/dpg_trigger/comm_trigger/L1Trigger/cmsl1dpg/MacrosNtuples/l1macros" + script_dir = "/eos/home-l/lebeling/projects/MacrosNtuples/l1macros" os.chdir(script_dir) for script in config["scripts"]: From 418396be40f31b6feb6e16476a7c4930c4739651 Mon Sep 17 00:00:00 2001 From: LukasEbeling Date: Thu, 15 Aug 2024 12:54:29 +0200 Subject: [PATCH 05/76] cron job runner hadding output files per run --- l1macros/cron_job_runner_new.py | 141 ++++++++++++++++++++++++++++++++ 1 file changed, 141 insertions(+) create mode 100644 l1macros/cron_job_runner_new.py diff --git a/l1macros/cron_job_runner_new.py b/l1macros/cron_job_runner_new.py new file mode 100644 index 0000000..9d31c19 --- /dev/null +++ b/l1macros/cron_job_runner_new.py @@ -0,0 +1,141 @@ +#!/bin/python3 + +import os, sys, time, subprocess +from glob import glob +import random + + +in_prefix = "/eos/cms/tier0/store/data" +#out_prefix = "/eos/cms/store/group/dpg_trigger/comm_trigger/L1Trigger/cmsl1dpg/www/DQM/T0PromptNanoMonit/" +out_prefix = "/eos/home-l/lebeling/www/DQM" +script_dir = "/eos/home-l/lebeling/projects/MacrosNtuples/l1macros" + +config_dict = { + "JetMET" : # for JetMET plots + { + "datasets" : ["JetMET0","JetMET1"], + "eras" : ["Run2024*"], + "scripts": [ + "python3 performances_nano.py -i $INFILE -o $OUTDIR/all_DiJet.root -c DiJet", + "python3 ../plotting/make_DiJet_plots.py --dir $OUTDIR --config ../config_cards/full_DiJet.yaml", + ] + }, + "EGamma" : # for JetMET plots + { + "datasets" : ["EGamma0","EGamma1"], + "eras" : ["Run2024*"], + "scripts": [ + "python3 performances_nano.py -i $INFILE -o $OUTDIR/all_PhotonJet.root -c PhotonJet", + "python3 performances_nano.py -i $INFILE -o $OUTDIR/all_ZToEE.root -c ZToEE", + + ## OFF DQM + "python3 performances_nano_dqmoff.py -i $INFILE -o $OUTDIR/oug_zee_dqmoff.root -c ZToEEDQMOff", + ## Plot + "python3 ../plotting/make_ZToEE_plots.py --dir $OUTDIR --config ../config_cards/full_ZToEE.yaml", + "python3 ../plotting/make_PhotonJet_plots.py --dir $OUTDIR --config ../config_cards/full_PhotonJet.yaml", + ] + }, + "Muon" : # for JetMET plots + { + "datasets" : ["Muon0","Muon1"], + "eras" : ["Run2024*"], + "scripts" : [ + "/bin/python3 performances_nano.py -i $INFILE -o $OUTDIR/all_ZToMuMu.root -c ZToMuMu", + "/bin/python3 performances_nano.py -i $INFILE -o $OUTDIR/all_MuonJet.root -c MuonJet", + "/bin/python3 performances_nano.py -i $INFILE -o $OUTDIR/all_ZToTauTau.root -c ZToTauTau ", + ## OFF DQM + "/bin/python3 performances_nano_dqmoff.py -i $INFILE -o $OUTDIR/out_zmumu_dqmoffl.root -c ZToMuMuDQMOff", + "/bin/python3 performances_nano_dqmoff.py -i $INFILE -o $OUTDIR/out_jets_dqmoff.root -c JetsDQMOff ", + "/bin/python3 performances_nano_dqmoff.py -i $INFILE -o $OUTDIR/out_ztautau_dqmoff.root -c ZToTauTauDQMOff", + "/bin/python3 performances_nano_dqmoff.py -i $INFILE -o $OUTDIR/out_zmumu_dqmoffl.root -c ZToMuMuDQMOff", + "/bin/python3 performances_nano_dqmoff.py -i $INFILE -o $OUTDIR/out_etsum_dqmoff.root -c EtSumDQMOff", + ## plotting + "/bin/python3 ../plotting/make_ZToMuMu_plots.py --dir $OUTDIR --config ../config_cards/full_ZToMuMu.yaml", + "/bin/python3 ../plotting/make_ZToTauTau_plots.py --dir $OUTDIR --config ../config_cards/full_ZToTauTau.yaml", + "/bin/python3 ../plotting/make_MuonJet_plots.py --dir $OUTDIR --config ../config_cards/full_MuonJet.yaml", + ] + } +} + +def hadd(target, sources): + old_hadd = "" + if os.path.exists(target): + old_hadd = target.replace(".root", f"_old.root") + os.system(f"mv {target} {old_hadd}") + sources.append(old_hadd) + + hadd_cmd = f"hadd -f {target} {' '.join(sources)}" + print(hadd_cmd) + subprocess.run(hadd_cmd, shell=True) + + if os.path.exists(old_hadd): + os.system(f"rm -rf {old_hadd}") + + +def make_file_list(filepath): + if not os.path.exists(filepath): + os.makedirs(outpath, exist_ok=True) + subprocess.run(f"touch {filepath}", shell=True) + print(f"Created file list at {filepath}") + + +def check_file_list(filepath): + make_file_list(filepath) + with open(filepath, "r") as f: + files_in_list = f.readlines() + files_in_list = [f.strip() for f in files_in_list] + return files_in_list + + +def append_file_list(filepath, files): + make_file_list(filepath) + with open(filepath, "w") as f: + for file in files: f.write(file + "\n") + + +def run_script(scripts, infile, outdir): + os.chdir(script_dir) + if not os.path.exists(outdir+"/plotsL1Run3"): + os.makedirs(outdir+"/plotsL1Run3", exist_ok=True) + + for script in scripts: + script = script.replace("$INFILE", infile).replace("$OUTDIR", outdir) + print(script) + with open(f"{outdir}/log.txt", "w") as f: + subprocess.run(script, shell=True, stdout=f, stderr=f) + + + +for label, config in config_dict.items(): + + runs = [] + for dataset in config["datasets"]: + for era in config["eras"]: + runs += glob(f"{in_prefix}/{era}/{dataset}/NANOAOD/PromptReco-v*/*/*/*/*") + + for run in runs: + all_files = glob(f"{run}/*.root") + if len(all_files) == 0: continue + + runnum = int("".join(run.split("/")[11:13])) + if runnum > 383500: break # just test for few runs + + era_label = run.split("/")[6] + + print(era_label, run, "\n"+80*"#") + + outpath = f"{out_prefix}/{era_label}/{label}/{runnum}" + + merged_files = check_file_list(f"{outpath}/merged_files.txt") + + if set(all_files) == set(merged_files): + print("All files are already hadded / plotted") + continue + + new_files = list(set(all_files) - set(merged_files)) + hadd(f"{outpath}/merged.root", new_files) + append_file_list(f"{outpath}/merged_files.txt", new_files) + + run_script(config["scripts"], f"{outpath}/merged.root", outpath) + + From 14e9725462aed1bad53770af5349d2d6756b181b Mon Sep 17 00:00:00 2001 From: LukasEbeling Date: Mon, 2 Sep 2024 16:47:25 +0200 Subject: [PATCH 06/76] deleted --- l1macros/cron_job_runner_new.py | 141 -------------------------------- 1 file changed, 141 deletions(-) delete mode 100644 l1macros/cron_job_runner_new.py diff --git a/l1macros/cron_job_runner_new.py b/l1macros/cron_job_runner_new.py deleted file mode 100644 index 9d31c19..0000000 --- a/l1macros/cron_job_runner_new.py +++ /dev/null @@ -1,141 +0,0 @@ -#!/bin/python3 - -import os, sys, time, subprocess -from glob import glob -import random - - -in_prefix = "/eos/cms/tier0/store/data" -#out_prefix = "/eos/cms/store/group/dpg_trigger/comm_trigger/L1Trigger/cmsl1dpg/www/DQM/T0PromptNanoMonit/" -out_prefix = "/eos/home-l/lebeling/www/DQM" -script_dir = "/eos/home-l/lebeling/projects/MacrosNtuples/l1macros" - -config_dict = { - "JetMET" : # for JetMET plots - { - "datasets" : ["JetMET0","JetMET1"], - "eras" : ["Run2024*"], - "scripts": [ - "python3 performances_nano.py -i $INFILE -o $OUTDIR/all_DiJet.root -c DiJet", - "python3 ../plotting/make_DiJet_plots.py --dir $OUTDIR --config ../config_cards/full_DiJet.yaml", - ] - }, - "EGamma" : # for JetMET plots - { - "datasets" : ["EGamma0","EGamma1"], - "eras" : ["Run2024*"], - "scripts": [ - "python3 performances_nano.py -i $INFILE -o $OUTDIR/all_PhotonJet.root -c PhotonJet", - "python3 performances_nano.py -i $INFILE -o $OUTDIR/all_ZToEE.root -c ZToEE", - - ## OFF DQM - "python3 performances_nano_dqmoff.py -i $INFILE -o $OUTDIR/oug_zee_dqmoff.root -c ZToEEDQMOff", - ## Plot - "python3 ../plotting/make_ZToEE_plots.py --dir $OUTDIR --config ../config_cards/full_ZToEE.yaml", - "python3 ../plotting/make_PhotonJet_plots.py --dir $OUTDIR --config ../config_cards/full_PhotonJet.yaml", - ] - }, - "Muon" : # for JetMET plots - { - "datasets" : ["Muon0","Muon1"], - "eras" : ["Run2024*"], - "scripts" : [ - "/bin/python3 performances_nano.py -i $INFILE -o $OUTDIR/all_ZToMuMu.root -c ZToMuMu", - "/bin/python3 performances_nano.py -i $INFILE -o $OUTDIR/all_MuonJet.root -c MuonJet", - "/bin/python3 performances_nano.py -i $INFILE -o $OUTDIR/all_ZToTauTau.root -c ZToTauTau ", - ## OFF DQM - "/bin/python3 performances_nano_dqmoff.py -i $INFILE -o $OUTDIR/out_zmumu_dqmoffl.root -c ZToMuMuDQMOff", - "/bin/python3 performances_nano_dqmoff.py -i $INFILE -o $OUTDIR/out_jets_dqmoff.root -c JetsDQMOff ", - "/bin/python3 performances_nano_dqmoff.py -i $INFILE -o $OUTDIR/out_ztautau_dqmoff.root -c ZToTauTauDQMOff", - "/bin/python3 performances_nano_dqmoff.py -i $INFILE -o $OUTDIR/out_zmumu_dqmoffl.root -c ZToMuMuDQMOff", - "/bin/python3 performances_nano_dqmoff.py -i $INFILE -o $OUTDIR/out_etsum_dqmoff.root -c EtSumDQMOff", - ## plotting - "/bin/python3 ../plotting/make_ZToMuMu_plots.py --dir $OUTDIR --config ../config_cards/full_ZToMuMu.yaml", - "/bin/python3 ../plotting/make_ZToTauTau_plots.py --dir $OUTDIR --config ../config_cards/full_ZToTauTau.yaml", - "/bin/python3 ../plotting/make_MuonJet_plots.py --dir $OUTDIR --config ../config_cards/full_MuonJet.yaml", - ] - } -} - -def hadd(target, sources): - old_hadd = "" - if os.path.exists(target): - old_hadd = target.replace(".root", f"_old.root") - os.system(f"mv {target} {old_hadd}") - sources.append(old_hadd) - - hadd_cmd = f"hadd -f {target} {' '.join(sources)}" - print(hadd_cmd) - subprocess.run(hadd_cmd, shell=True) - - if os.path.exists(old_hadd): - os.system(f"rm -rf {old_hadd}") - - -def make_file_list(filepath): - if not os.path.exists(filepath): - os.makedirs(outpath, exist_ok=True) - subprocess.run(f"touch {filepath}", shell=True) - print(f"Created file list at {filepath}") - - -def check_file_list(filepath): - make_file_list(filepath) - with open(filepath, "r") as f: - files_in_list = f.readlines() - files_in_list = [f.strip() for f in files_in_list] - return files_in_list - - -def append_file_list(filepath, files): - make_file_list(filepath) - with open(filepath, "w") as f: - for file in files: f.write(file + "\n") - - -def run_script(scripts, infile, outdir): - os.chdir(script_dir) - if not os.path.exists(outdir+"/plotsL1Run3"): - os.makedirs(outdir+"/plotsL1Run3", exist_ok=True) - - for script in scripts: - script = script.replace("$INFILE", infile).replace("$OUTDIR", outdir) - print(script) - with open(f"{outdir}/log.txt", "w") as f: - subprocess.run(script, shell=True, stdout=f, stderr=f) - - - -for label, config in config_dict.items(): - - runs = [] - for dataset in config["datasets"]: - for era in config["eras"]: - runs += glob(f"{in_prefix}/{era}/{dataset}/NANOAOD/PromptReco-v*/*/*/*/*") - - for run in runs: - all_files = glob(f"{run}/*.root") - if len(all_files) == 0: continue - - runnum = int("".join(run.split("/")[11:13])) - if runnum > 383500: break # just test for few runs - - era_label = run.split("/")[6] - - print(era_label, run, "\n"+80*"#") - - outpath = f"{out_prefix}/{era_label}/{label}/{runnum}" - - merged_files = check_file_list(f"{outpath}/merged_files.txt") - - if set(all_files) == set(merged_files): - print("All files are already hadded / plotted") - continue - - new_files = list(set(all_files) - set(merged_files)) - hadd(f"{outpath}/merged.root", new_files) - append_file_list(f"{outpath}/merged_files.txt", new_files) - - run_script(config["scripts"], f"{outpath}/merged.root", outpath) - - From e8992a7cd773cf55076e5d21bda48df822277d3f Mon Sep 17 00:00:00 2001 From: LukasEbeling Date: Mon, 2 Sep 2024 16:49:59 +0200 Subject: [PATCH 07/76] cron jobs for creating root hists, hadding hists, and plotting --- l1macros/cron_job_runner_hadd.py | 56 ++++++++++++++++ l1macros/cron_job_runner_plot.py | 64 +++++++++++++++++++ l1macros/cron_job_runner_root.py | 106 +++++++++++++++++++++++++++++++ 3 files changed, 226 insertions(+) create mode 100644 l1macros/cron_job_runner_hadd.py create mode 100644 l1macros/cron_job_runner_plot.py create mode 100644 l1macros/cron_job_runner_root.py diff --git a/l1macros/cron_job_runner_hadd.py b/l1macros/cron_job_runner_hadd.py new file mode 100644 index 0000000..6725fa5 --- /dev/null +++ b/l1macros/cron_job_runner_hadd.py @@ -0,0 +1,56 @@ +#!/bin/python3 + +import os +import subprocess +from glob import glob + +def hadd(target, sources): + cmd = f"hadd -f {target} {' '.join(sources)}" + subprocess.run(cmd, shell=True) + print(cmd) + +dqm_prefix = "/eos/home-l/lebeling/www/DQM" + +# collect all histogram root files +all_files = glob(f"{dqm_prefix}/*/*/PromptReco-v*/*/*/*.root") +print(all_files) + +# group files by runnum, by era, and by year +file_groups = {} +for file in all_files: + parts = file.split('/') + filename = parts[-1] + filehash = parts[-2] + runnum = parts[-3] + recoversion = parts[-4] + label = parts[-5] + era = parts[-6] + year = ''.join([char for char in era if char.isdigit()]) + + # group by runnum + #target = file.replace(filehash, "merged") + target = f"{dqm_prefix}/{era}/{label}/{recoversion}/{runnum}/merged/{filename}" + if target not in file_groups: + file_groups[target] = [] + file_groups[target].append(file) + + # group by era + target = f"{dqm_prefix}/{era}/{label}/merged/{filename}" + if target not in file_groups: + file_groups[target] = [] + file_groups[target].append(file) + + # group by year + target = f"{dqm_prefix}/{year}/{label}/merged/{filename}" + if target not in file_groups: + file_groups[target] = [] + file_groups[target].append(file) + + +# Hadd grouped files +for target, files in file_groups.items(): + print(f"Hadding files with target {target}") + os.makedirs(os.path.dirname(target), exist_ok=True) + hadd(target, files) + +# TODO skip files in filelist.txt \ No newline at end of file diff --git a/l1macros/cron_job_runner_plot.py b/l1macros/cron_job_runner_plot.py new file mode 100644 index 0000000..e135c85 --- /dev/null +++ b/l1macros/cron_job_runner_plot.py @@ -0,0 +1,64 @@ +#!/bin/python3 + +import os, sys, time, subprocess +from glob import glob + +dqm_prefix = "/eos/home-l/lebeling/www/DQM" +script_dir = "/eos/home-l/lebeling/projects/MacrosNtuples/l1macros" + +config_dict = { + "JetMET" : # for JetMET plots + { + "datasets" : ["JetMET0","JetMET1"], + "eras" : ["Run2024*"], + "scripts": [ + "python3 ../plotting/make_DiJet_plots.py --dir $OUTDIR --config ../config_cards/full_DiJet.yaml", + ] + }, + "EGamma" : # for JetMET plots + { + "datasets" : ["EGamma0","EGamma1"], + "eras" : ["Run2024*"], + "scripts": [ + ## plotting + "python3 ../plotting/make_ZToEE_plots.py --dir $OUTDIR --config ../config_cards/full_ZToEE.yaml", + "python3 ../plotting/make_PhotonJet_plots.py --dir $OUTDIR --config ../config_cards/full_PhotonJet.yaml", + ] + }, + "Muon" : # for JetMET plots + { + "datasets" : ["Muon0","Muon1"], + "eras" : ["Run2024*"], + "scripts" : [ + ## plotting + "/bin/python3 ../plotting/make_ZToMuMu_plots.py --dir $OUTDIR --config ../config_cards/full_ZToMuMu.yaml", + "/bin/python3 ../plotting/make_ZToTauTau_plots.py --dir $OUTDIR --config ../config_cards/full_ZToTauTau.yaml", + "/bin/python3 ../plotting/make_MuonJet_plots.py --dir $OUTDIR --config ../config_cards/full_MuonJet.yaml", + ] + } +} + +# run a given script with defined output directory +def run_script(script, outdir): + os.chdir(script_dir) + os.makedirs(outdir + "/plotsL1Run3", exist_ok=True) + cmd = script.replace("$OUTDIR", outdir) + + log_file = script.split(' ')[1] + log_file = log_file.split('/')[-1] + log_file = outdir + "/" + log_file.replace(".py", ".log") + + with open(log_file, "w") as f: + subprocess.run(cmd, shell=True, stdout=f, stderr=f) + + +# find all directories called 'merged' (containing hadded files), and run plotting scripts +for label, config in config_dict.items(): + pattern = os.path.join(dqm_prefix, '**', 'merged') + merged_dirs = glob(pattern, recursive=True) + + for merged_dir in merged_dirs: + for script in config["scripts"]: + print(80*"#"+'\n'+f"plotting for {merged_dir}") + run_script(script, merged_dir) + diff --git a/l1macros/cron_job_runner_root.py b/l1macros/cron_job_runner_root.py new file mode 100644 index 0000000..5f45a69 --- /dev/null +++ b/l1macros/cron_job_runner_root.py @@ -0,0 +1,106 @@ +#!/bin/python3 + +import os, sys, time, subprocess +from glob import glob +import random + + +path_prefix = "/eos/cms/tier0/store/data" +#script_dir = "/eos/cms/store/group/dpg_trigger/comm_trigger/L1Trigger/cmsl1dpg/MacrosNtuples/l1macros" +script_dir = "/eos/home-l/lebeling/projects/MacrosNtuples/l1macros" + + +config_dict = { + "JetMET" : # for JetMET plots + { + "datasets" : ["JetMET0","JetMET1"], + "eras" : ["Run2024*"], + "scripts": [ + "python3 performances_nano.py -i $INFILE -o $OUTDIR/all_DiJet.root -c DiJet", + #"python3 ../plotting/make_DiJet_plots.py --dir $OUTDIR --config ../config_cards/full_DiJet.yaml", + ] + }, + "EGamma" : # for JetMET plots + { + "datasets" : ["EGamma0","EGamma1"], + "eras" : ["Run2024*"], + "scripts": [ + "python3 performances_nano.py -i $INFILE -o $OUTDIR/all_PhotonJet.root -c PhotonJet", + "python3 performances_nano.py -i $INFILE -o $OUTDIR/all_ZToEE.root -c ZToEE", + + ## OFF DQM + "python3 performances_nano_dqmoff.py -i $INFILE -o $OUTDIR/oug_zee_dqmoff.root -c ZToEEDQMOff", + ## Plot + #"python3 ../plotting/make_ZToEE_plots.py --dir $OUTDIR --config ../config_cards/full_ZToEE.yaml", + #"python3 ../plotting/make_PhotonJet_plots.py --dir $OUTDIR --config ../config_cards/full_PhotonJet.yaml", + ] + }, + "Muon" : # for JetMET plots + { + "datasets" : ["Muon0","Muon1"], + "eras" : ["Run2024*"], + "scripts" : [ + "/bin/python3 performances_nano.py -i $INFILE -o $OUTDIR/all_ZToMuMu.root -c ZToMuMu", + "/bin/python3 performances_nano.py -i $INFILE -o $OUTDIR/all_MuonJet.root -c MuonJet", + "/bin/python3 performances_nano.py -i $INFILE -o $OUTDIR/all_ZToTauTau.root -c ZToTauTau ", + ## OFF DQM + "/bin/python3 performances_nano_dqmoff.py -i $INFILE -o $OUTDIR/out_zmumu_dqmoffl.root -c ZToMuMuDQMOff", + "/bin/python3 performances_nano_dqmoff.py -i $INFILE -o $OUTDIR/out_jets_dqmoff.root -c JetsDQMOff ", + "/bin/python3 performances_nano_dqmoff.py -i $INFILE -o $OUTDIR/out_ztautau_dqmoff.root -c ZToTauTauDQMOff", + "/bin/python3 performances_nano_dqmoff.py -i $INFILE -o $OUTDIR/out_zmumu_dqmoffl.root -c ZToMuMuDQMOff", + "/bin/python3 performances_nano_dqmoff.py -i $INFILE -o $OUTDIR/out_etsum_dqmoff.root -c EtSumDQMOff", + ## plotting + #"/bin/python3 ../plotting/make_ZToMuMu_plots.py --dir $OUTDIR --config ../config_cards/full_ZToMuMu.yaml", + #"/bin/python3 ../plotting/make_ZToTauTau_plots.py --dir $OUTDIR --config ../config_cards/full_ZToTauTau.yaml", + #"/bin/python3 ../plotting/make_MuonJet_plots.py --dir $OUTDIR --config ../config_cards/full_MuonJet.yaml", + ] + } +} + +def run_script(script, infile, outdir): + if os.path.exists(outdir): return + + os.chdir(script_dir) + os.makedirs(outdir, exist_ok=True) + cmd = script.replace("$INFILE", infile).replace("$OUTDIR", outdir) + #cmd = "" + + log_file = script.split(' ')[1] + log_file = log_file.split('/')[-1] + log_file = outdir + "/" + log_file.replace(".py", ".log") + + with open(log_file, "w") as f: + subprocess.run(cmd, shell=True, stdout=f, stderr=f) + + print(f" Processing file {fname}") + + +for label, config in config_dict.items(): + print(80*"#") + print(f"Running plots for {label}") + print(80*"#") + + # step 1 - find all files on tier 0 + fnames = [] + for dataset in config["datasets"]: + for era in config["eras"]: + fnames += glob(f"{path_prefix}/{era}/{dataset}/NANOAOD/PromptReco-v*/*/*/*/*/*.root") + + # step 2 - for each file, run scripts + for fname in fnames: + + ## decode file path to run, era etc + fname_split = fname.split("/") + dataset = fname.split("/")[7] + run = int("".join(fname.split("/")[11:13])) + base_fname = fname.split("/")[-1].replace(".root","") + era = fname.split("/")[6] + reco_version = fname.split("/")[9] + + outdir = f"{era}/{label}/{reco_version}/{run}/{base_fname}" + + #out_web_path = "/eos/cms/store/group/dpg_trigger/comm_trigger/L1Trigger/cmsl1dpg/www/DQM/T0PromptNanoMonit/" + outdir + out_web_path = "/eos/home-l/lebeling/www/DQM/" + outdir + + for script in config["scripts"]: + run_script(script, fname, out_web_path) From 8bdf56506b4d55f350bac66df8b0b2ca7794b12a Mon Sep 17 00:00:00 2001 From: LukasEbeling Date: Mon, 16 Sep 2024 17:24:50 +0200 Subject: [PATCH 08/76] init --- l1macros/cleanup.py | 15 +++++++++++++++ 1 file changed, 15 insertions(+) create mode 100644 l1macros/cleanup.py diff --git a/l1macros/cleanup.py b/l1macros/cleanup.py new file mode 100644 index 0000000..7477eec --- /dev/null +++ b/l1macros/cleanup.py @@ -0,0 +1,15 @@ +#!/bin/python3 + +import glob +import os + +base_path = '/eos/home-l/lebeling/www/DQM' + +subdirectories = glob.glob("/eos/home-l/lebeling/www/DQM/*/*/PromptReco-v*/*/*/") + +# script to delete every subdirectory that does not contain any .root files +for subdirectory in subdirectories: + files = glob.glob(os.path.join(subdirectory, "*.root")) + if len(files) == 0: + print(f"Deleting subdirectory: {subdirectory}") + #os.system(f"rm -rf {subdirectory}") From 8493af5d38083899b5235b06f44c679dcd04e9a4 Mon Sep 17 00:00:00 2001 From: LukasEbeling Date: Mon, 16 Sep 2024 17:25:13 +0200 Subject: [PATCH 09/76] path changed: year/era/... --- l1macros/cron_job_runner_root.py | 24 +++++++++++++++++++----- 1 file changed, 19 insertions(+), 5 deletions(-) diff --git a/l1macros/cron_job_runner_root.py b/l1macros/cron_job_runner_root.py index 5f45a69..7fd1221 100644 --- a/l1macros/cron_job_runner_root.py +++ b/l1macros/cron_job_runner_root.py @@ -57,13 +57,18 @@ } } -def run_script(script, infile, outdir): - if os.path.exists(outdir): return +# get number of root files in a directory +def get_root_files(path): + files = glob(f"{path}/*.root") + return len(files) + +# run a given script with defined output directory +def run_script(script, infile, outdir): + #infile = 'root://eoscms.cern.ch/' + infile os.chdir(script_dir) os.makedirs(outdir, exist_ok=True) cmd = script.replace("$INFILE", infile).replace("$OUTDIR", outdir) - #cmd = "" log_file = script.split(' ')[1] log_file = log_file.split('/')[-1] @@ -75,6 +80,7 @@ def run_script(script, infile, outdir): print(f" Processing file {fname}") +# main logic: run plotting scripts for each new file and merge per run, era and year for label, config in config_dict.items(): print(80*"#") print(f"Running plots for {label}") @@ -86,6 +92,7 @@ def run_script(script, infile, outdir): for era in config["eras"]: fnames += glob(f"{path_prefix}/{era}/{dataset}/NANOAOD/PromptReco-v*/*/*/*/*/*.root") + fnames = fnames[:2] # step 2 - for each file, run scripts for fname in fnames: @@ -97,10 +104,17 @@ def run_script(script, infile, outdir): era = fname.split("/")[6] reco_version = fname.split("/")[9] - outdir = f"{era}/{label}/{reco_version}/{run}/{base_fname}" + year = ''.join([char for char in era if char.isdigit()]) + + outdir = f"{year}/{era}/{label}/{reco_version}/{run}/{base_fname}" #out_web_path = "/eos/cms/store/group/dpg_trigger/comm_trigger/L1Trigger/cmsl1dpg/www/DQM/T0PromptNanoMonit/" + outdir out_web_path = "/eos/home-l/lebeling/www/DQM/" + outdir - for script in config["scripts"]: + if os.path.exists(out_web_path): + if get_root_files(out_web_path) > 0: + print(f"Skipping {out_web_path} - already processed") + continue + + for script in config["scripts"]: run_script(script, fname, out_web_path) From 6c294878fdb90f683badeea5cf94a881f8c1fc8f Mon Sep 17 00:00:00 2001 From: LukasEbeling Date: Mon, 16 Sep 2024 17:25:30 +0200 Subject: [PATCH 10/76] log files for cron job --- l1macros/hadd.log | 0 l1macros/hist.log | 0 l1macros/plot.log | 0 3 files changed, 0 insertions(+), 0 deletions(-) create mode 100644 l1macros/hadd.log create mode 100644 l1macros/hist.log create mode 100644 l1macros/plot.log diff --git a/l1macros/hadd.log b/l1macros/hadd.log new file mode 100644 index 0000000..e69de29 diff --git a/l1macros/hist.log b/l1macros/hist.log new file mode 100644 index 0000000..e69de29 diff --git a/l1macros/plot.log b/l1macros/plot.log new file mode 100644 index 0000000..e69de29 From bf33276ea4e4248f70c92dff01e85c61cb2244a0 Mon Sep 17 00:00:00 2001 From: LukasEbeling Date: Fri, 18 Oct 2024 14:54:52 +0200 Subject: [PATCH 11/76] not needed --- l1macros/hadd.log | 0 l1macros/hist.log | 0 l1macros/plot.log | 0 3 files changed, 0 insertions(+), 0 deletions(-) delete mode 100644 l1macros/hadd.log delete mode 100644 l1macros/hist.log delete mode 100644 l1macros/plot.log diff --git a/l1macros/hadd.log b/l1macros/hadd.log deleted file mode 100644 index e69de29..0000000 diff --git a/l1macros/hist.log b/l1macros/hist.log deleted file mode 100644 index e69de29..0000000 diff --git a/l1macros/plot.log b/l1macros/plot.log deleted file mode 100644 index e69de29..0000000 From 79101413d69079f6dc0856efa94086637db1e146 Mon Sep 17 00:00:00 2001 From: LukasEbeling Date: Fri, 18 Oct 2024 14:55:18 +0200 Subject: [PATCH 12/76] renamed --- l1macros/cron_job_runner_hadd.py | 56 --------------- l1macros/cron_job_runner_plot.py | 64 ----------------- l1macros/cron_job_runner_root.py | 120 ------------------------------- 3 files changed, 240 deletions(-) delete mode 100644 l1macros/cron_job_runner_hadd.py delete mode 100644 l1macros/cron_job_runner_plot.py delete mode 100644 l1macros/cron_job_runner_root.py diff --git a/l1macros/cron_job_runner_hadd.py b/l1macros/cron_job_runner_hadd.py deleted file mode 100644 index 6725fa5..0000000 --- a/l1macros/cron_job_runner_hadd.py +++ /dev/null @@ -1,56 +0,0 @@ -#!/bin/python3 - -import os -import subprocess -from glob import glob - -def hadd(target, sources): - cmd = f"hadd -f {target} {' '.join(sources)}" - subprocess.run(cmd, shell=True) - print(cmd) - -dqm_prefix = "/eos/home-l/lebeling/www/DQM" - -# collect all histogram root files -all_files = glob(f"{dqm_prefix}/*/*/PromptReco-v*/*/*/*.root") -print(all_files) - -# group files by runnum, by era, and by year -file_groups = {} -for file in all_files: - parts = file.split('/') - filename = parts[-1] - filehash = parts[-2] - runnum = parts[-3] - recoversion = parts[-4] - label = parts[-5] - era = parts[-6] - year = ''.join([char for char in era if char.isdigit()]) - - # group by runnum - #target = file.replace(filehash, "merged") - target = f"{dqm_prefix}/{era}/{label}/{recoversion}/{runnum}/merged/{filename}" - if target not in file_groups: - file_groups[target] = [] - file_groups[target].append(file) - - # group by era - target = f"{dqm_prefix}/{era}/{label}/merged/{filename}" - if target not in file_groups: - file_groups[target] = [] - file_groups[target].append(file) - - # group by year - target = f"{dqm_prefix}/{year}/{label}/merged/{filename}" - if target not in file_groups: - file_groups[target] = [] - file_groups[target].append(file) - - -# Hadd grouped files -for target, files in file_groups.items(): - print(f"Hadding files with target {target}") - os.makedirs(os.path.dirname(target), exist_ok=True) - hadd(target, files) - -# TODO skip files in filelist.txt \ No newline at end of file diff --git a/l1macros/cron_job_runner_plot.py b/l1macros/cron_job_runner_plot.py deleted file mode 100644 index e135c85..0000000 --- a/l1macros/cron_job_runner_plot.py +++ /dev/null @@ -1,64 +0,0 @@ -#!/bin/python3 - -import os, sys, time, subprocess -from glob import glob - -dqm_prefix = "/eos/home-l/lebeling/www/DQM" -script_dir = "/eos/home-l/lebeling/projects/MacrosNtuples/l1macros" - -config_dict = { - "JetMET" : # for JetMET plots - { - "datasets" : ["JetMET0","JetMET1"], - "eras" : ["Run2024*"], - "scripts": [ - "python3 ../plotting/make_DiJet_plots.py --dir $OUTDIR --config ../config_cards/full_DiJet.yaml", - ] - }, - "EGamma" : # for JetMET plots - { - "datasets" : ["EGamma0","EGamma1"], - "eras" : ["Run2024*"], - "scripts": [ - ## plotting - "python3 ../plotting/make_ZToEE_plots.py --dir $OUTDIR --config ../config_cards/full_ZToEE.yaml", - "python3 ../plotting/make_PhotonJet_plots.py --dir $OUTDIR --config ../config_cards/full_PhotonJet.yaml", - ] - }, - "Muon" : # for JetMET plots - { - "datasets" : ["Muon0","Muon1"], - "eras" : ["Run2024*"], - "scripts" : [ - ## plotting - "/bin/python3 ../plotting/make_ZToMuMu_plots.py --dir $OUTDIR --config ../config_cards/full_ZToMuMu.yaml", - "/bin/python3 ../plotting/make_ZToTauTau_plots.py --dir $OUTDIR --config ../config_cards/full_ZToTauTau.yaml", - "/bin/python3 ../plotting/make_MuonJet_plots.py --dir $OUTDIR --config ../config_cards/full_MuonJet.yaml", - ] - } -} - -# run a given script with defined output directory -def run_script(script, outdir): - os.chdir(script_dir) - os.makedirs(outdir + "/plotsL1Run3", exist_ok=True) - cmd = script.replace("$OUTDIR", outdir) - - log_file = script.split(' ')[1] - log_file = log_file.split('/')[-1] - log_file = outdir + "/" + log_file.replace(".py", ".log") - - with open(log_file, "w") as f: - subprocess.run(cmd, shell=True, stdout=f, stderr=f) - - -# find all directories called 'merged' (containing hadded files), and run plotting scripts -for label, config in config_dict.items(): - pattern = os.path.join(dqm_prefix, '**', 'merged') - merged_dirs = glob(pattern, recursive=True) - - for merged_dir in merged_dirs: - for script in config["scripts"]: - print(80*"#"+'\n'+f"plotting for {merged_dir}") - run_script(script, merged_dir) - diff --git a/l1macros/cron_job_runner_root.py b/l1macros/cron_job_runner_root.py deleted file mode 100644 index 7fd1221..0000000 --- a/l1macros/cron_job_runner_root.py +++ /dev/null @@ -1,120 +0,0 @@ -#!/bin/python3 - -import os, sys, time, subprocess -from glob import glob -import random - - -path_prefix = "/eos/cms/tier0/store/data" -#script_dir = "/eos/cms/store/group/dpg_trigger/comm_trigger/L1Trigger/cmsl1dpg/MacrosNtuples/l1macros" -script_dir = "/eos/home-l/lebeling/projects/MacrosNtuples/l1macros" - - -config_dict = { - "JetMET" : # for JetMET plots - { - "datasets" : ["JetMET0","JetMET1"], - "eras" : ["Run2024*"], - "scripts": [ - "python3 performances_nano.py -i $INFILE -o $OUTDIR/all_DiJet.root -c DiJet", - #"python3 ../plotting/make_DiJet_plots.py --dir $OUTDIR --config ../config_cards/full_DiJet.yaml", - ] - }, - "EGamma" : # for JetMET plots - { - "datasets" : ["EGamma0","EGamma1"], - "eras" : ["Run2024*"], - "scripts": [ - "python3 performances_nano.py -i $INFILE -o $OUTDIR/all_PhotonJet.root -c PhotonJet", - "python3 performances_nano.py -i $INFILE -o $OUTDIR/all_ZToEE.root -c ZToEE", - - ## OFF DQM - "python3 performances_nano_dqmoff.py -i $INFILE -o $OUTDIR/oug_zee_dqmoff.root -c ZToEEDQMOff", - ## Plot - #"python3 ../plotting/make_ZToEE_plots.py --dir $OUTDIR --config ../config_cards/full_ZToEE.yaml", - #"python3 ../plotting/make_PhotonJet_plots.py --dir $OUTDIR --config ../config_cards/full_PhotonJet.yaml", - ] - }, - "Muon" : # for JetMET plots - { - "datasets" : ["Muon0","Muon1"], - "eras" : ["Run2024*"], - "scripts" : [ - "/bin/python3 performances_nano.py -i $INFILE -o $OUTDIR/all_ZToMuMu.root -c ZToMuMu", - "/bin/python3 performances_nano.py -i $INFILE -o $OUTDIR/all_MuonJet.root -c MuonJet", - "/bin/python3 performances_nano.py -i $INFILE -o $OUTDIR/all_ZToTauTau.root -c ZToTauTau ", - ## OFF DQM - "/bin/python3 performances_nano_dqmoff.py -i $INFILE -o $OUTDIR/out_zmumu_dqmoffl.root -c ZToMuMuDQMOff", - "/bin/python3 performances_nano_dqmoff.py -i $INFILE -o $OUTDIR/out_jets_dqmoff.root -c JetsDQMOff ", - "/bin/python3 performances_nano_dqmoff.py -i $INFILE -o $OUTDIR/out_ztautau_dqmoff.root -c ZToTauTauDQMOff", - "/bin/python3 performances_nano_dqmoff.py -i $INFILE -o $OUTDIR/out_zmumu_dqmoffl.root -c ZToMuMuDQMOff", - "/bin/python3 performances_nano_dqmoff.py -i $INFILE -o $OUTDIR/out_etsum_dqmoff.root -c EtSumDQMOff", - ## plotting - #"/bin/python3 ../plotting/make_ZToMuMu_plots.py --dir $OUTDIR --config ../config_cards/full_ZToMuMu.yaml", - #"/bin/python3 ../plotting/make_ZToTauTau_plots.py --dir $OUTDIR --config ../config_cards/full_ZToTauTau.yaml", - #"/bin/python3 ../plotting/make_MuonJet_plots.py --dir $OUTDIR --config ../config_cards/full_MuonJet.yaml", - ] - } -} - -# get number of root files in a directory -def get_root_files(path): - files = glob(f"{path}/*.root") - return len(files) - - -# run a given script with defined output directory -def run_script(script, infile, outdir): - #infile = 'root://eoscms.cern.ch/' + infile - os.chdir(script_dir) - os.makedirs(outdir, exist_ok=True) - cmd = script.replace("$INFILE", infile).replace("$OUTDIR", outdir) - - log_file = script.split(' ')[1] - log_file = log_file.split('/')[-1] - log_file = outdir + "/" + log_file.replace(".py", ".log") - - with open(log_file, "w") as f: - subprocess.run(cmd, shell=True, stdout=f, stderr=f) - - print(f" Processing file {fname}") - - -# main logic: run plotting scripts for each new file and merge per run, era and year -for label, config in config_dict.items(): - print(80*"#") - print(f"Running plots for {label}") - print(80*"#") - - # step 1 - find all files on tier 0 - fnames = [] - for dataset in config["datasets"]: - for era in config["eras"]: - fnames += glob(f"{path_prefix}/{era}/{dataset}/NANOAOD/PromptReco-v*/*/*/*/*/*.root") - - fnames = fnames[:2] - # step 2 - for each file, run scripts - for fname in fnames: - - ## decode file path to run, era etc - fname_split = fname.split("/") - dataset = fname.split("/")[7] - run = int("".join(fname.split("/")[11:13])) - base_fname = fname.split("/")[-1].replace(".root","") - era = fname.split("/")[6] - reco_version = fname.split("/")[9] - - year = ''.join([char for char in era if char.isdigit()]) - - outdir = f"{year}/{era}/{label}/{reco_version}/{run}/{base_fname}" - - #out_web_path = "/eos/cms/store/group/dpg_trigger/comm_trigger/L1Trigger/cmsl1dpg/www/DQM/T0PromptNanoMonit/" + outdir - out_web_path = "/eos/home-l/lebeling/www/DQM/" + outdir - - if os.path.exists(out_web_path): - if get_root_files(out_web_path) > 0: - print(f"Skipping {out_web_path} - already processed") - continue - - for script in config["scripts"]: - run_script(script, fname, out_web_path) From 7dfc9018dfadca8b1ff0940534e5f14feaf1f5fd Mon Sep 17 00:00:00 2001 From: LukasEbeling Date: Fri, 18 Oct 2024 14:55:56 +0200 Subject: [PATCH 13/76] new try --- l1macros/config.yaml | 44 +++++++++++++++++++++++++++++ l1macros/job_runner_hadd.py | 55 ++++++++++++++++++++++++++++++++++++ l1macros/job_runner_hists.py | 38 +++++++++++++++++++++++++ l1macros/job_runner_plot.py | 21 ++++++++++++++ l1macros/job_runner_utils.py | 43 ++++++++++++++++++++++++++++ 5 files changed, 201 insertions(+) create mode 100644 l1macros/config.yaml create mode 100644 l1macros/job_runner_hadd.py create mode 100644 l1macros/job_runner_hists.py create mode 100644 l1macros/job_runner_plot.py create mode 100644 l1macros/job_runner_utils.py diff --git a/l1macros/config.yaml b/l1macros/config.yaml new file mode 100644 index 0000000..bc759c4 --- /dev/null +++ b/l1macros/config.yaml @@ -0,0 +1,44 @@ +JetMET: + datasets: + - 'JetMET0' + - 'JetMET1' + eras: + - 'Run2024*' + scripts: + - 'python3 performances_nano.py -i $INFILE -o $OUTDIR/all_DiJet.root -c DiJet' + plotting: + - 'python3 ../plotting/make_DiJet_plots.py --dir $OUTDIR --config ../config_cards/full_DiJet.yaml' + +EGamma: + datasets: + - 'EGamma0' + - 'EGamma1' + eras: + - 'Run2024*' + scripts: + - 'python3 performances_nano.py -i $INFILE -o $OUTDIR/all_PhotonJet.root -c PhotonJet' + - 'python3 performances_nano.py -i $INFILE -o $OUTDIR/all_ZToEE.root -c ZToEE' + - 'python3 performances_nano_dqmoff.py -i $INFILE -o $OUTDIR/oug_zee_dqmoff.root -c ZToEEDQMOff' + plotting: + - 'python3 ../plotting/make_ZToEE_plots.py --dir $OUTDIR --config ../config_cards/full_ZToEE.yaml' + - 'python3 ../plotting/make_PhotonJet_plots.py --dir $OUTDIR --config ../config_cards/full_PhotonJet.yaml' + +Muon: + datasets: + - 'Muon0' + - 'Muon1' + eras: + - 'Run2024*' + scripts: + - 'python3 performances_nano.py -i $INFILE -o $OUTDIR/all_ZToMuMu.root -c ZToMuMu' + - 'python3 performances_nano.py -i $INFILE -o $OUTDIR/all_MuonJet.root -c MuonJet' + - 'python3 performances_nano.py -i $INFILE -o $OUTDIR/all_ZToTauTau.root -c ZToTauTau' + - 'python3 performances_nano_dqmoff.py -i $INFILE -o $OUTDIR/out_zmumu_dqmoffl.root -c ZToMuMuDQMOff' + - 'python3 performances_nano_dqmoff.py -i $INFILE -o $OUTDIR/out_jets_dqmoff.root -c JetsDQMOff' + - 'python3 performances_nano_dqmoff.py -i $INFILE -o $OUTDIR/out_ztautau_dqmoff.root -c ZToTauTauDQMOff' + - 'python3 performances_nano_dqmoff.py -i $INFILE -o $OUTDIR/out_zmumu_dqmoffl.root -c ZToMuMuDQMOff' + - 'python3 performances_nano_dqmoff.py -i $INFILE -o $OUTDIR/out_etsum_dqmoff.root -c EtSumDQMOff' + plotting: + - 'python3 ../plotting/make_ZToMuMu_plots.py --dir $OUTDIR --config ../config_cards/full_ZToMuMu.yaml' + - 'python3 ../plotting/make_ZToTauTau_plots.py --dir $OUTDIR --config ../config_cards/full_ZToTauTau.yaml' + - 'python3 ../plotting/make_MuonJet_plots.py --dir $OUTDIR --config ../config_cards/full_MuonJet.yaml' \ No newline at end of file diff --git a/l1macros/job_runner_hadd.py b/l1macros/job_runner_hadd.py new file mode 100644 index 0000000..36d6c1d --- /dev/null +++ b/l1macros/job_runner_hadd.py @@ -0,0 +1,55 @@ +#!/bin/python3 + +import os +import subprocess +from glob import glob + +def hadd(target, sources): + cmd = f"hadd -f {target} {' '.join(sources)}" + subprocess.run(cmd, shell=True) + +dqm_prefix = "/eos/home-l/lebeling/www/DQM" + +# collect all histogram root files +#all_files = glob(f"{dqm_prefix}/*/*/*/PromptReco-v*/*/*/*.root") +all_files = glob(f"{dqm_prefix}/*/*/*/*/*/*.root") +print(all_files) + +# group files by runnum, by era, and by year +file_groups = {} +for file in all_files: + parts = file.split('/') + filename = parts[-1] + filehash = parts[-2] + runnum = parts[-3] + era = parts[-4] + label = parts[-5] + year = parts[-6] + + # group by runnum + #target = file.replace(filehash, "merged") + target = f"{dqm_prefix}/{year}/{label}/{era}/{runnum}/merged/{filename}" + if target not in file_groups: + file_groups[target] = [] + file_groups[target].append(file) + + # group by era + target = f"{dqm_prefix}/{year}/{label}/{era}/merged/{filename}" + if target not in file_groups: + file_groups[target] = [] + file_groups[target].append(file) + + # group by year + target = f"{dqm_prefix}/{year}/{label}/merged/{filename}" + if target not in file_groups: + file_groups[target] = [] + file_groups[target].append(file) + + +# Hadd grouped files +for target, files in file_groups.items(): + print(f"Hadding files with target {target}") + os.makedirs(os.path.dirname(target), exist_ok=True) + hadd(target, files) + +# TODO skip files in filelist.txt \ No newline at end of file diff --git a/l1macros/job_runner_hists.py b/l1macros/job_runner_hists.py new file mode 100644 index 0000000..e871018 --- /dev/null +++ b/l1macros/job_runner_hists.py @@ -0,0 +1,38 @@ +#!/bin/python3 + +import os, sys, subprocess, yaml +from glob import glob +from job_runner_utils import run_script, write_queue, parse_file + + +path_prefix = "/eos/cms/tier0/store/data" +out_prefix = "/eos/user/l/lebeling/www/DQM/" # "/eos/cms/store/group/dpg_trigger/comm_trigger/L1Trigger/cmsl1dpg/www/DQM/T0PromptNanoMonit/" +script_dir = os.getcwd() +config_dict = yaml.safe_load(open('config.yaml', 'r')) + + +for label, config in config_dict.items(): + print(20*"#" + f" Running plots for {label} " + 20*"#") + + # step 1 - find all files on tier 0 + fnames = [] + for dataset in config["datasets"]: + for era in config["eras"]: + fnames += glob(f"{path_prefix}/{era}/{dataset}/NANOAOD/PromptReco-v*/*/*/*/*/*.root") + + # step 2 - for each file, run scripts + fnames = fnames[:5] + for fname in fnames: + print(f"Processing file {fname}") + + out_web_path = out_prefix + parse_file(fname) + + if os.path.exists(out_web_path): + root_files = glob(f"{out_web_path}/*.root") + if len(root_files) > 0: + print(f"Skipping {out_web_path} - already processed") + continue + + for script in config["scripts"]: + run_script(script, fname, out_web_path) + #write_queue(script, fname, out_web_path) diff --git a/l1macros/job_runner_plot.py b/l1macros/job_runner_plot.py new file mode 100644 index 0000000..854a707 --- /dev/null +++ b/l1macros/job_runner_plot.py @@ -0,0 +1,21 @@ +#!/bin/python3 + +import os, sys, time, subprocess, yaml +from glob import glob +from job_runner_utils import run_script + +dqm_prefix = "/eos/home-l/lebeling/www/DQM" +script_dir = "/eos/home-l/lebeling/projects/MacrosNtuples/l1macros" +config_dict = yaml.safe_load(open('config.yaml', 'r')) + + +# find all directories called 'merged' (containing hadded files), and run plotting scripts +for label, config in config_dict.items(): + pattern = os.path.join(dqm_prefix, '**', label,'**', 'merged') + merged_dirs = glob(pattern, recursive=True) + + for merged_dir in merged_dirs: + for script in config["plotting"]: + print(80*"#"+'\n'+f"plotting for {merged_dir}") + run_script(script, "", merged_dir) + diff --git a/l1macros/job_runner_utils.py b/l1macros/job_runner_utils.py new file mode 100644 index 0000000..120f348 --- /dev/null +++ b/l1macros/job_runner_utils.py @@ -0,0 +1,43 @@ +import os, subprocess + +script_dir = os.getcwd() + +def run_script(script, infile, outdir): + infile = 'root://eoscms.cern.ch/' + infile + os.chdir(script_dir) + os.makedirs(outdir, exist_ok=True) + cmd = script.replace("$INFILE", infile).replace("$OUTDIR", outdir) + + log_file = script.split(' ')[1] + log_file = log_file.split('/')[-1] + log_file = outdir + "/" + log_file.replace(".py", ".log") + + with open(log_file, "w") as f: + #subprocess.run(cmd, shell=True, stdout=f, stderr=f) + print(cmd) + + +def parse_file(fname): + dataset = fname.split("/")[7] + run = int("".join(fname.split("/")[11:13])) + base_fname = fname.split("/")[-1].replace(".root","") + era = fname.split("/")[6] + reco_version = fname.split("/")[9] + + year = ''.join([char for char in era if char.isdigit()]) + label = ''.join([char for char in dataset if not char.isdigit()]) + + + return f"{year}/{label}/{era}/{run}/{base_fname}" + + +def write_queue(script, infile, outdir): + script = script.replace("$OUTDIR/", "") + strings = script.split(" ") + script = strings[1] + outfile = strings[5] + option = strings[-1] + infile = "root://eoscms.cern.ch/" + infile + + with open("../htcondor/hists.txt", "a") as f: + f.write(script + ", " + infile + ", " + outfile + ", " + option + ", " + outdir + "\n") \ No newline at end of file From 1b1e942bba43563cb31f3e2f20b1708bc90ae894 Mon Sep 17 00:00:00 2001 From: LukasEbeling Date: Fri, 18 Oct 2024 14:56:19 +0200 Subject: [PATCH 14/76] init --- .gitignore | 1 + 1 file changed, 1 insertion(+) create mode 100644 .gitignore diff --git a/.gitignore b/.gitignore new file mode 100644 index 0000000..bda97f7 --- /dev/null +++ b/.gitignore @@ -0,0 +1 @@ +**/__pycache__/** \ No newline at end of file From 54df4f5893eafed0b2e96caf877a07ec832e021c Mon Sep 17 00:00:00 2001 From: LukasEbeling Date: Thu, 24 Oct 2024 16:56:29 +0200 Subject: [PATCH 15/76] init --- l1macros/config.yaml | 2 +- l1macros/{job_runner_hists.py => make_hists.py} | 17 ++++++++++++++--- 2 files changed, 15 insertions(+), 4 deletions(-) rename l1macros/{job_runner_hists.py => make_hists.py} (65%) diff --git a/l1macros/config.yaml b/l1macros/config.yaml index bc759c4..ec3151d 100644 --- a/l1macros/config.yaml +++ b/l1macros/config.yaml @@ -31,7 +31,7 @@ Muon: - 'Run2024*' scripts: - 'python3 performances_nano.py -i $INFILE -o $OUTDIR/all_ZToMuMu.root -c ZToMuMu' - - 'python3 performances_nano.py -i $INFILE -o $OUTDIR/all_MuonJet.root -c MuonJet' + - 'python3 performances_nano.py -i $INFILE -o $OUTDIR/all_MuonJet.root -c MuonJet' #TODO not working - 'python3 performances_nano.py -i $INFILE -o $OUTDIR/all_ZToTauTau.root -c ZToTauTau' - 'python3 performances_nano_dqmoff.py -i $INFILE -o $OUTDIR/out_zmumu_dqmoffl.root -c ZToMuMuDQMOff' - 'python3 performances_nano_dqmoff.py -i $INFILE -o $OUTDIR/out_jets_dqmoff.root -c JetsDQMOff' diff --git a/l1macros/job_runner_hists.py b/l1macros/make_hists.py similarity index 65% rename from l1macros/job_runner_hists.py rename to l1macros/make_hists.py index e871018..9b85f39 100644 --- a/l1macros/job_runner_hists.py +++ b/l1macros/make_hists.py @@ -1,6 +1,6 @@ #!/bin/python3 -import os, sys, subprocess, yaml +import os, sys, subprocess, yaml, argparse from glob import glob from job_runner_utils import run_script, write_queue, parse_file @@ -11,6 +11,16 @@ config_dict = yaml.safe_load(open('config.yaml', 'r')) +# parse arguments +parser = argparse.ArgumentParser(description="Run plots for datasets") +parser.add_argument('--local', action='store_true', help='run locally (not on condor)') +args = parser.parse_args() +local = args.local + +if not local: os.system('rm -rf ../htcondor/queue.txt') + + +# main logic: glob files on tier 0 and run plotting scripts for label, config in config_dict.items(): print(20*"#" + f" Running plots for {label} " + 20*"#") @@ -34,5 +44,6 @@ continue for script in config["scripts"]: - run_script(script, fname, out_web_path) - #write_queue(script, fname, out_web_path) + os.makedirs(out_web_path, exist_ok=True) + if local: run_script(script, fname, out_web_path) # run script on current shell + else: write_queue(script, fname, out_web_path) # write script into htcondor queue file From 2d5ce4c92c5e2bd7f096e6d76644e34063baae6a Mon Sep 17 00:00:00 2001 From: LukasEbeling Date: Thu, 24 Oct 2024 17:01:15 +0200 Subject: [PATCH 16/76] cap after 5 files removed --- l1macros/make_hists.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/l1macros/make_hists.py b/l1macros/make_hists.py index 9b85f39..5758453 100644 --- a/l1macros/make_hists.py +++ b/l1macros/make_hists.py @@ -31,7 +31,7 @@ fnames += glob(f"{path_prefix}/{era}/{dataset}/NANOAOD/PromptReco-v*/*/*/*/*/*.root") # step 2 - for each file, run scripts - fnames = fnames[:5] + # fnames = fnames[:5] for fname in fnames: print(f"Processing file {fname}") From c7b49176414d304cd013becd6c05d56d4827ae5d Mon Sep 17 00:00:00 2001 From: LukasEbeling Date: Thu, 24 Oct 2024 18:10:48 +0200 Subject: [PATCH 17/76] merging --- l1macros/job_runner_hadd.py | 55 -------------------------------- l1macros/merge_both.py | 62 +++++++++++++++++++++++++++++++++++++ l1macros/merge_per_era.py | 55 ++++++++++++++++++++++++++++++++ l1macros/merge_per_run.py | 49 +++++++++++++++++++++++++++++ 4 files changed, 166 insertions(+), 55 deletions(-) delete mode 100644 l1macros/job_runner_hadd.py create mode 100644 l1macros/merge_both.py create mode 100644 l1macros/merge_per_era.py create mode 100644 l1macros/merge_per_run.py diff --git a/l1macros/job_runner_hadd.py b/l1macros/job_runner_hadd.py deleted file mode 100644 index 36d6c1d..0000000 --- a/l1macros/job_runner_hadd.py +++ /dev/null @@ -1,55 +0,0 @@ -#!/bin/python3 - -import os -import subprocess -from glob import glob - -def hadd(target, sources): - cmd = f"hadd -f {target} {' '.join(sources)}" - subprocess.run(cmd, shell=True) - -dqm_prefix = "/eos/home-l/lebeling/www/DQM" - -# collect all histogram root files -#all_files = glob(f"{dqm_prefix}/*/*/*/PromptReco-v*/*/*/*.root") -all_files = glob(f"{dqm_prefix}/*/*/*/*/*/*.root") -print(all_files) - -# group files by runnum, by era, and by year -file_groups = {} -for file in all_files: - parts = file.split('/') - filename = parts[-1] - filehash = parts[-2] - runnum = parts[-3] - era = parts[-4] - label = parts[-5] - year = parts[-6] - - # group by runnum - #target = file.replace(filehash, "merged") - target = f"{dqm_prefix}/{year}/{label}/{era}/{runnum}/merged/{filename}" - if target not in file_groups: - file_groups[target] = [] - file_groups[target].append(file) - - # group by era - target = f"{dqm_prefix}/{year}/{label}/{era}/merged/{filename}" - if target not in file_groups: - file_groups[target] = [] - file_groups[target].append(file) - - # group by year - target = f"{dqm_prefix}/{year}/{label}/merged/{filename}" - if target not in file_groups: - file_groups[target] = [] - file_groups[target].append(file) - - -# Hadd grouped files -for target, files in file_groups.items(): - print(f"Hadding files with target {target}") - os.makedirs(os.path.dirname(target), exist_ok=True) - hadd(target, files) - -# TODO skip files in filelist.txt \ No newline at end of file diff --git a/l1macros/merge_both.py b/l1macros/merge_both.py new file mode 100644 index 0000000..75cc236 --- /dev/null +++ b/l1macros/merge_both.py @@ -0,0 +1,62 @@ +#!/bin/python3 + +import os, argparse +from glob import glob +from job_runner_utils import run_script, write_queue + + +#dqm_prefix = "/eos/cms/store/group/dpg_trigger/comm_trigger/L1Trigger/cmsl1dpg/www/DQM/T0PromptNanoMonit" +dqm_prefix = "/eos/user/l/lebeling/www/DQM" +out_prefix = "/eos/user/l/lebeling/www/DQM" + + +# parse arguments +parser = argparse.ArgumentParser(description="merge per era") +parser.add_argument('--local', action='store_true', help='run locally (not on condor)') +args = parser.parse_args() +local = args.local + +if not local: os.system('rm -rf ../htcondor/queue.txt') + +# collect all histogram root files +all_files = glob(f"{dqm_prefix}/*/*/*/*/*/*/*.root") +print('found files:', len(all_files)) + + +# group files by runnum, by era, and by year +file_groups = {} +for file in all_files: + parts = file.split('/') + filename = parts[-1] + filehash = parts[-2] + era = parts[-6] + label = parts[-7] + + # group by runnum + target = file.replace(filehash, "merged") + if target not in file_groups: + file_groups[target] = [] + file_groups[target].append(file) + + # group by era + target = f"{out_prefix}/{label}/{era}/merged/{filename}" + if target not in file_groups: + file_groups[target] = [] + file_groups[target].append(file) + + # group by year + target = f"{out_prefix}/{label}/merged/{filename}" + if target not in file_groups: + file_groups[target] = [] + file_groups[target].append(file) + + +# Hadd grouped files +for target, files in file_groups.items(): + print(f"Hadding files with target {target}") + os.makedirs(os.path.dirname(target), exist_ok=True) + cmd = f'hadd -f {target} ' + ' '.join(files) + if local: run_script(cmd) + else: write_queue(cmd) + +# TODO skip files in filelist.txt \ No newline at end of file diff --git a/l1macros/merge_per_era.py b/l1macros/merge_per_era.py new file mode 100644 index 0000000..cd1da6a --- /dev/null +++ b/l1macros/merge_per_era.py @@ -0,0 +1,55 @@ +#!/bin/python3 + +import os, argparse +from glob import glob +from job_runner_utils import run_script, write_queue + + +#dqm_prefix = "/eos/cms/store/group/dpg_trigger/comm_trigger/L1Trigger/cmsl1dpg/www/DQM/T0PromptNanoMonit" +dqm_prefix = "/eos/user/l/lebeling/www/DQM" +out_prefix = "/eos/user/l/lebeling/www/DQM" + + +# parse arguments +parser = argparse.ArgumentParser(description="merge per era") +parser.add_argument('--local', action='store_true', help='run locally (not on condor)') +args = parser.parse_args() +local = args.local + +if not local: os.system('rm -rf ../htcondor/queue.txt') + +# collect all histogram root files +all_files = glob(f"{dqm_prefix}/*/*/*/*/*/merged/*.root") +print('found files:', len(all_files)) + + +# group files by runnum, by era, and by year +file_groups = {} +for file in all_files: + parts = file.split('/') + filename = parts[-1] + era = parts[-6] + label = parts[-7] + + # group by era + target = f"{out_prefix}/{label}/{era}/merged/{filename}" + if target not in file_groups: + file_groups[target] = [] + file_groups[target].append(file) + + # group by year + target = f"{out_prefix}/{label}/merged/{filename}" + if target not in file_groups: + file_groups[target] = [] + file_groups[target].append(file) + + +# Hadd grouped files +for target, files in file_groups.items(): + print(f"Hadding files with target {target}") + os.makedirs(os.path.dirname(target), exist_ok=True) + cmd = f'hadd -f {target} ' + ' '.join(files) + if local: run_script(cmd) + else: write_queue(cmd) + +# TODO skip files in filelist.txt \ No newline at end of file diff --git a/l1macros/merge_per_run.py b/l1macros/merge_per_run.py new file mode 100644 index 0000000..4debd94 --- /dev/null +++ b/l1macros/merge_per_run.py @@ -0,0 +1,49 @@ +#!/bin/python3 + +import os, argparse +from glob import glob +from job_runner_utils import run_script, write_queue + + +#dqm_prefix = "/eos/cms/store/group/dpg_trigger/comm_trigger/L1Trigger/cmsl1dpg/www/DQM/T0PromptNanoMonit" +dqm_prefix = "/eos/user/l/lebeling/www/DQM" +out_prefix = "/eos/user/l/lebeling/www/DQM" + +# parse arguments +parser = argparse.ArgumentParser(description="merge per run") +parser.add_argument('--local', action='store_true', help='run locally (not on condor)') +args = parser.parse_args() +local = args.local + +if not local: os.system('rm -rf ../htcondor/queue.txt') + + +# collect all histogram root files +all_files = glob(f"{dqm_prefix}/*/*/*/*/*/*/*.root") +print('found files:', len(all_files)) + + +# group files by runnum, by era, and by year +file_groups = {} +for file in all_files: + parts = file.split('/') + filename = parts[-1] + filehash = parts[-2] + + # group by runnum + target = file.replace(filehash, "merged") + if target not in file_groups: + file_groups[target] = [] + file_groups[target].append(file) + + +# Hadd grouped files +for target, files in file_groups.items(): + print(f"Hadding files with target {target}") + os.makedirs(os.path.dirname(target), exist_ok=True) + #cmd = f'hadd -f {target} ' + ', '.join(files) + cmd = f'hadd -f {target} ' + ' '.join(files) + if local: run_script(cmd) + else: write_queue(cmd) + +# TODO skip files in filelist.txt \ No newline at end of file From 6ac0a076a9c2cc99126fd461ff3cc8464981dc76 Mon Sep 17 00:00:00 2001 From: LukasEbeling Date: Thu, 24 Oct 2024 18:34:49 +0200 Subject: [PATCH 18/76] plotting --- l1macros/job_runner_plot.py | 21 --------------------- l1macros/make_plots.py | 32 ++++++++++++++++++++++++++++++++ 2 files changed, 32 insertions(+), 21 deletions(-) delete mode 100644 l1macros/job_runner_plot.py create mode 100644 l1macros/make_plots.py diff --git a/l1macros/job_runner_plot.py b/l1macros/job_runner_plot.py deleted file mode 100644 index 854a707..0000000 --- a/l1macros/job_runner_plot.py +++ /dev/null @@ -1,21 +0,0 @@ -#!/bin/python3 - -import os, sys, time, subprocess, yaml -from glob import glob -from job_runner_utils import run_script - -dqm_prefix = "/eos/home-l/lebeling/www/DQM" -script_dir = "/eos/home-l/lebeling/projects/MacrosNtuples/l1macros" -config_dict = yaml.safe_load(open('config.yaml', 'r')) - - -# find all directories called 'merged' (containing hadded files), and run plotting scripts -for label, config in config_dict.items(): - pattern = os.path.join(dqm_prefix, '**', label,'**', 'merged') - merged_dirs = glob(pattern, recursive=True) - - for merged_dir in merged_dirs: - for script in config["plotting"]: - print(80*"#"+'\n'+f"plotting for {merged_dir}") - run_script(script, "", merged_dir) - diff --git a/l1macros/make_plots.py b/l1macros/make_plots.py new file mode 100644 index 0000000..5fbb378 --- /dev/null +++ b/l1macros/make_plots.py @@ -0,0 +1,32 @@ +#!/bin/python3 + +import os, argparse, yaml +from glob import glob +from job_runner_utils import run_script, write_queue + + +dqm_prefix = "/eos/user/l/lebeling/www/DQM/" # "/eos/cms/store/group/dpg_trigger/comm_trigger/L1Trigger/cmsl1dpg/www/DQM/T0PromptNanoMonit/" +script_dir = os.getcwd() +config_dict = yaml.safe_load(open('config.yaml', 'r')) + + +# parse arguments +parser = argparse.ArgumentParser(description="plotting") +parser.add_argument('--local', action='store_true', help='run locally (not on condor)') +args = parser.parse_args() +local = args.local + +if not local: os.system('rm -rf ../htcondor/queue.txt') + + +# main logic: glob files merged root files and make plots +for label, config in config_dict.items(): + pattern = os.path.join(dqm_prefix, '**', label,'**', 'merged') + merged_dirs = glob(pattern, recursive=True) + + for merged_dir in merged_dirs: + for script in config["plotting"]: + print(80*"#"+'\n'+f"plotting for {merged_dir}") + os.makedirs(merged_dir + '/plotsL1Run3', exist_ok=True) + if local: run_script(script, "", merged_dir) + else: write_queue(script, "", merged_dir) \ No newline at end of file From 5a01d2d3353f062b4f77c6a95c44101ff01147d7 Mon Sep 17 00:00:00 2001 From: LukasEbeling Date: Thu, 24 Oct 2024 18:38:38 +0200 Subject: [PATCH 19/76] utils renamed --- l1macros/job_runner_utils.py | 43 -------------------------------- l1macros/make_hists.py | 4 +-- l1macros/make_plots.py | 2 +- l1macros/merge_both.py | 2 +- l1macros/merge_per_era.py | 2 +- l1macros/merge_per_run.py | 2 +- l1macros/utils.py | 48 ++++++++++++++++++++++++++++++++++++ 7 files changed, 54 insertions(+), 49 deletions(-) delete mode 100644 l1macros/job_runner_utils.py create mode 100644 l1macros/utils.py diff --git a/l1macros/job_runner_utils.py b/l1macros/job_runner_utils.py deleted file mode 100644 index 120f348..0000000 --- a/l1macros/job_runner_utils.py +++ /dev/null @@ -1,43 +0,0 @@ -import os, subprocess - -script_dir = os.getcwd() - -def run_script(script, infile, outdir): - infile = 'root://eoscms.cern.ch/' + infile - os.chdir(script_dir) - os.makedirs(outdir, exist_ok=True) - cmd = script.replace("$INFILE", infile).replace("$OUTDIR", outdir) - - log_file = script.split(' ')[1] - log_file = log_file.split('/')[-1] - log_file = outdir + "/" + log_file.replace(".py", ".log") - - with open(log_file, "w") as f: - #subprocess.run(cmd, shell=True, stdout=f, stderr=f) - print(cmd) - - -def parse_file(fname): - dataset = fname.split("/")[7] - run = int("".join(fname.split("/")[11:13])) - base_fname = fname.split("/")[-1].replace(".root","") - era = fname.split("/")[6] - reco_version = fname.split("/")[9] - - year = ''.join([char for char in era if char.isdigit()]) - label = ''.join([char for char in dataset if not char.isdigit()]) - - - return f"{year}/{label}/{era}/{run}/{base_fname}" - - -def write_queue(script, infile, outdir): - script = script.replace("$OUTDIR/", "") - strings = script.split(" ") - script = strings[1] - outfile = strings[5] - option = strings[-1] - infile = "root://eoscms.cern.ch/" + infile - - with open("../htcondor/hists.txt", "a") as f: - f.write(script + ", " + infile + ", " + outfile + ", " + option + ", " + outdir + "\n") \ No newline at end of file diff --git a/l1macros/make_hists.py b/l1macros/make_hists.py index 5758453..a1482f4 100644 --- a/l1macros/make_hists.py +++ b/l1macros/make_hists.py @@ -2,7 +2,7 @@ import os, sys, subprocess, yaml, argparse from glob import glob -from job_runner_utils import run_script, write_queue, parse_file +from utils import run_script, write_queue, parse_file path_prefix = "/eos/cms/tier0/store/data" @@ -31,7 +31,7 @@ fnames += glob(f"{path_prefix}/{era}/{dataset}/NANOAOD/PromptReco-v*/*/*/*/*/*.root") # step 2 - for each file, run scripts - # fnames = fnames[:5] + # fnames = fnames[:100] for fname in fnames: print(f"Processing file {fname}") diff --git a/l1macros/make_plots.py b/l1macros/make_plots.py index 5fbb378..1871be4 100644 --- a/l1macros/make_plots.py +++ b/l1macros/make_plots.py @@ -2,7 +2,7 @@ import os, argparse, yaml from glob import glob -from job_runner_utils import run_script, write_queue +from utils import run_script, write_queue dqm_prefix = "/eos/user/l/lebeling/www/DQM/" # "/eos/cms/store/group/dpg_trigger/comm_trigger/L1Trigger/cmsl1dpg/www/DQM/T0PromptNanoMonit/" diff --git a/l1macros/merge_both.py b/l1macros/merge_both.py index 75cc236..86fed8f 100644 --- a/l1macros/merge_both.py +++ b/l1macros/merge_both.py @@ -2,7 +2,7 @@ import os, argparse from glob import glob -from job_runner_utils import run_script, write_queue +from utils import run_script, write_queue #dqm_prefix = "/eos/cms/store/group/dpg_trigger/comm_trigger/L1Trigger/cmsl1dpg/www/DQM/T0PromptNanoMonit" diff --git a/l1macros/merge_per_era.py b/l1macros/merge_per_era.py index cd1da6a..8a7cef2 100644 --- a/l1macros/merge_per_era.py +++ b/l1macros/merge_per_era.py @@ -2,7 +2,7 @@ import os, argparse from glob import glob -from job_runner_utils import run_script, write_queue +from utils import run_script, write_queue #dqm_prefix = "/eos/cms/store/group/dpg_trigger/comm_trigger/L1Trigger/cmsl1dpg/www/DQM/T0PromptNanoMonit" diff --git a/l1macros/merge_per_run.py b/l1macros/merge_per_run.py index 4debd94..cc6b5f7 100644 --- a/l1macros/merge_per_run.py +++ b/l1macros/merge_per_run.py @@ -2,7 +2,7 @@ import os, argparse from glob import glob -from job_runner_utils import run_script, write_queue +from utils import run_script, write_queue #dqm_prefix = "/eos/cms/store/group/dpg_trigger/comm_trigger/L1Trigger/cmsl1dpg/www/DQM/T0PromptNanoMonit" diff --git a/l1macros/utils.py b/l1macros/utils.py new file mode 100644 index 0000000..09babf6 --- /dev/null +++ b/l1macros/utils.py @@ -0,0 +1,48 @@ +import os, subprocess + +script_dir = os.getcwd() + +def run_script(script, infile = "", outdir = ""): + infile = 'root://eoscms.cern.ch/' + infile + os.chdir(script_dir) + os.makedirs(outdir, exist_ok=True) + cmd = script.replace("$INFILE", infile).replace("$OUTDIR", outdir) + + log_file = script.split(' ')[1] + log_file = log_file.split('/')[-1] + log_file = outdir + "/" + log_file.replace(".py", ".log") + + with open(log_file, "w") as f: + subprocess.run(cmd, shell=True, stdout=f, stderr=f) + + +def parse_file(fname): + dataset = fname.split("/")[7] + run = int("".join(fname.split("/")[11:13])) + base_fname = fname.split("/")[-1].replace(".root","") + era = fname.split("/")[6] + reco_version = fname.split("/")[9] + + year = ''.join([char for char in era if char.isdigit()]) + label = ''.join([char for char in dataset if not char.isdigit()]) + + #return f"{year}/{label}/{era}/{run}/{base_fname}" + return f"{label}/{era}/{dataset}/{reco_version}/{run}/{base_fname}" + + +def write_queue(script, infile = "", outdir = ""): + cmd = script.replace("$INFILE", infile).replace("$OUTDIR", outdir) + cmd = cmd.replace(" ", "___") + with open("../htcondor/queue.txt", "a") as f: + f.write(cmd + "\n") + +# def write_queue(script, infile, outdir): +# script = script.replace("$OUTDIR/", "") +# strings = script.split(" ") +# script = strings[1] +# outfile = strings[5] +# option = strings[-1] +# infile = "root://eoscms.cern.ch/" + infile + +# with open("../htcondor/hists.txt", "a") as f: +# f.write(script + ", " + infile + ", " + outfile + ", " + option + ", " + outdir + "\n") \ No newline at end of file From 10154edaa4d5a4e154b8da8b5c7a44445febc586 Mon Sep 17 00:00:00 2001 From: LukasEbeling Date: Thu, 24 Oct 2024 18:39:09 +0200 Subject: [PATCH 20/76] htcondor setup --- htcondor/copy.sh | 6 ++++++ htcondor/submit.txt | 18 ++++++++++++++++++ htcondor/wrapper.py | 20 ++++++++++++++++++++ 3 files changed, 44 insertions(+) create mode 100755 htcondor/copy.sh create mode 100644 htcondor/submit.txt create mode 100755 htcondor/wrapper.py diff --git a/htcondor/copy.sh b/htcondor/copy.sh new file mode 100755 index 0000000..3f7176f --- /dev/null +++ b/htcondor/copy.sh @@ -0,0 +1,6 @@ +#!/bin/bash + +pwd +ls -a +#cp foo.txt /afs/cern.ch/user/l/lebeling/MacrosNtuples/. +cp ~/output /eos/user/l/lebeling/. \ No newline at end of file diff --git a/htcondor/submit.txt b/htcondor/submit.txt new file mode 100644 index 0000000..928293c --- /dev/null +++ b/htcondor/submit.txt @@ -0,0 +1,18 @@ +executable = wrapper.py +arguments = $(cmd) +output = logs/$(ClusterId).$(ProcId).out +error = logs/$(ClusterId).$(ProcId).err +log = logs/$(ClusterId).$(ProcId).log ++JobFlavour = espresso + + +#output_destination = root://eosuser.cern.ch/$(path) +#should_transfer_files = YES +#MY.XRDCP_CREATE_DIR = True + +transfer_input_files = /afs/cern.ch/user/l/lebeling/MacrosNtuples +#+PostCmd = "MacrosNtuples/htcondor/copy.sh" + +#transfer_output_files = $(out) + +queue cmd from queue.txt \ No newline at end of file diff --git a/htcondor/wrapper.py b/htcondor/wrapper.py new file mode 100755 index 0000000..6297e73 --- /dev/null +++ b/htcondor/wrapper.py @@ -0,0 +1,20 @@ +#!/bin/python3 + +import argparse +import os + +# parse arguments +parser = argparse.ArgumentParser(description="wrapper running script on htcondor") + +# Add an argument that accepts multiple values +parser.add_argument('cmd', nargs='+', type=str, help='commands to be executed') +args = parser.parse_args() + +concatenated_cmd = ' '.join(args.cmd) +concatenated_cmd = concatenated_cmd.replace("___", " ") +concatenated_cmd = 'cd MacrosNtuples/l1macros; ' + concatenated_cmd + +print(concatenated_cmd) +os.system(concatenated_cmd) +#os.system("pwd") +#os.system("ls -a") \ No newline at end of file From 798f0c0c87f94867bed4c25cc11c47c87b3186e2 Mon Sep 17 00:00:00 2001 From: LukasEbeling Date: Thu, 24 Oct 2024 18:39:18 +0200 Subject: [PATCH 21/76] logs, queue added --- .gitignore | 4 +++- 1 file changed, 3 insertions(+), 1 deletion(-) diff --git a/.gitignore b/.gitignore index bda97f7..9f7a963 100644 --- a/.gitignore +++ b/.gitignore @@ -1 +1,3 @@ -**/__pycache__/** \ No newline at end of file +**/__pycache__/** +**/logs/** +/htcondor/queue.txt \ No newline at end of file From 9040bce3b58326c7d8272c2bbd88e6aa7aef26a5 Mon Sep 17 00:00:00 2001 From: LukasEbeling Date: Mon, 11 Nov 2024 13:16:17 +0100 Subject: [PATCH 22/76] for different in- and output path --- l1macros/merge_per_run.py | 7 +++---- 1 file changed, 3 insertions(+), 4 deletions(-) diff --git a/l1macros/merge_per_run.py b/l1macros/merge_per_run.py index cc6b5f7..fcfb0fe 100644 --- a/l1macros/merge_per_run.py +++ b/l1macros/merge_per_run.py @@ -5,8 +5,8 @@ from utils import run_script, write_queue -#dqm_prefix = "/eos/cms/store/group/dpg_trigger/comm_trigger/L1Trigger/cmsl1dpg/www/DQM/T0PromptNanoMonit" -dqm_prefix = "/eos/user/l/lebeling/www/DQM" +dqm_prefix = "/eos/cms/store/group/dpg_trigger/comm_trigger/L1Trigger/cmsl1dpg/www/DQM/T0PromptNanoMonit" +#dqm_prefix = "/eos/user/l/lebeling/www/DQM" out_prefix = "/eos/user/l/lebeling/www/DQM" # parse arguments @@ -31,7 +31,7 @@ filehash = parts[-2] # group by runnum - target = file.replace(filehash, "merged") + target = file.replace(filehash, "merged").replace(dqm_prefix, out_prefix) if target not in file_groups: file_groups[target] = [] file_groups[target].append(file) @@ -41,7 +41,6 @@ for target, files in file_groups.items(): print(f"Hadding files with target {target}") os.makedirs(os.path.dirname(target), exist_ok=True) - #cmd = f'hadd -f {target} ' + ', '.join(files) cmd = f'hadd -f {target} ' + ' '.join(files) if local: run_script(cmd) else: write_queue(cmd) From 0bfefa932e291ff1bc7f77450bbf1efe607c26e1 Mon Sep 17 00:00:00 2001 From: LukasEbeling Date: Mon, 11 Nov 2024 13:16:39 +0100 Subject: [PATCH 23/76] submitted files zipped --- htcondor/submit.txt | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/htcondor/submit.txt b/htcondor/submit.txt index 928293c..125168e 100644 --- a/htcondor/submit.txt +++ b/htcondor/submit.txt @@ -10,7 +10,7 @@ log = logs/$(ClusterId).$(ProcId).log #should_transfer_files = YES #MY.XRDCP_CREATE_DIR = True -transfer_input_files = /afs/cern.ch/user/l/lebeling/MacrosNtuples +transfer_input_files = /afs/cern.ch/user/l/lebeling/MacrosNtuples.tar.gz #+PostCmd = "MacrosNtuples/htcondor/copy.sh" #transfer_output_files = $(out) From 318109b240191c82897bcdac796162f53b8d17b4 Mon Sep 17 00:00:00 2001 From: LukasEbeling Date: Mon, 11 Nov 2024 13:17:23 +0100 Subject: [PATCH 24/76] submit files zipped --- htcondor/wrapper.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/htcondor/wrapper.py b/htcondor/wrapper.py index 6297e73..72de63f 100755 --- a/htcondor/wrapper.py +++ b/htcondor/wrapper.py @@ -12,7 +12,7 @@ concatenated_cmd = ' '.join(args.cmd) concatenated_cmd = concatenated_cmd.replace("___", " ") -concatenated_cmd = 'cd MacrosNtuples/l1macros; ' + concatenated_cmd +concatenated_cmd = 'tar -xzf MacrosNtuples.tar.gz; cd MacrosNtuples/l1macros; ' + concatenated_cmd print(concatenated_cmd) os.system(concatenated_cmd) From 6e3945370292830d1e297ddb727a00e011431274 Mon Sep 17 00:00:00 2001 From: LukasEbeling Date: Mon, 18 Nov 2024 17:51:51 +0100 Subject: [PATCH 25/76] merging per week added --- l1macros/merge_per_era.py | 14 ++++++++++++-- 1 file changed, 12 insertions(+), 2 deletions(-) diff --git a/l1macros/merge_per_era.py b/l1macros/merge_per_era.py index 8a7cef2..00a05af 100644 --- a/l1macros/merge_per_era.py +++ b/l1macros/merge_per_era.py @@ -2,7 +2,7 @@ import os, argparse from glob import glob -from utils import run_script, write_queue +from utils import run_script, write_queue, get_weeks #dqm_prefix = "/eos/cms/store/group/dpg_trigger/comm_trigger/L1Trigger/cmsl1dpg/www/DQM/T0PromptNanoMonit" @@ -22,15 +22,25 @@ all_files = glob(f"{dqm_prefix}/*/*/*/*/*/merged/*.root") print('found files:', len(all_files)) +weeks = get_weeks() -# group files by runnum, by era, and by year +# group files by week, by era, and by year file_groups = {} for file in all_files: parts = file.split('/') filename = parts[-1] + run = int(parts[-3]) era = parts[-6] label = parts[-7] + # group by week - not all run in list? + if run in weeks.keys(): + week = weeks[run] + target = f"{out_prefix}/{label}/{era}/week_{week}/merged/{filename}" + if target not in file_groups: + file_groups[target] = [] + file_groups[target].append(file) + # group by era target = f"{out_prefix}/{label}/{era}/merged/{filename}" if target not in file_groups: From ec04c6ff4b070faed2514b8e6099d64f375d2468 Mon Sep 17 00:00:00 2001 From: LukasEbeling Date: Mon, 18 Nov 2024 17:52:09 +0100 Subject: [PATCH 26/76] merging per week added --- l1macros/utils.py | 21 +++++++++++++++++++-- 1 file changed, 19 insertions(+), 2 deletions(-) diff --git a/l1macros/utils.py b/l1macros/utils.py index 09babf6..5c6637a 100644 --- a/l1macros/utils.py +++ b/l1macros/utils.py @@ -1,4 +1,5 @@ -import os, subprocess +import os, subprocess, uproot +import pandas as pd script_dir = os.getcwd() @@ -45,4 +46,20 @@ def write_queue(script, infile = "", outdir = ""): # infile = "root://eoscms.cern.ch/" + infile # with open("../htcondor/hists.txt", "a") as f: -# f.write(script + ", " + infile + ", " + outfile + ", " + option + ", " + outdir + "\n") \ No newline at end of file +# f.write(script + ", " + infile + ", " + outfile + ", " + option + ", " + outdir + "\n") + +def get_weeks(): + oms_path = "/eos/cms/store/group/tsg/STEAM/OMSRateNtuple/2024/physics.root" + with uproot.open(oms_path) as f: + df = f["tree"].arrays( + filter_name = ['run', 'year', 'month', 'day'], + library = "pd" + ) + df['date'] = pd.to_datetime(df[['year', 'month', 'day']]) + df['week'] = df['date'].dt.isocalendar().week + + result_dict = {} + for _, row in df.iterrows(): + result_dict[row['run']] = row['week'] + + return result_dict From b795d465516081955bc6bb71ad7a043ee97fc2ca Mon Sep 17 00:00:00 2001 From: LukasEbeling Date: Tue, 3 Dec 2024 15:45:08 +0100 Subject: [PATCH 27/76] files moved --- {l1macros => automation}/config.yaml | 0 {l1macros => automation}/make_hists.py | 12 +- {l1macros => automation}/make_plots.py | 25 +- {l1macros => automation}/merge_both.py | 0 {l1macros => automation}/merge_per_era.py | 10 +- {l1macros => automation}/merge_per_run.py | 10 +- automation/queue.txt | 5559 +++++++++++++++++++++ {htcondor => automation}/submit.txt | 2 + {l1macros => automation}/utils.py | 55 +- {htcondor => automation}/wrapper.py | 0 htcondor/copy.sh | 6 - l1macros/cleanup.py | 15 - 12 files changed, 5628 insertions(+), 66 deletions(-) rename {l1macros => automation}/config.yaml (100%) rename {l1macros => automation}/make_hists.py (79%) rename {l1macros => automation}/make_plots.py (52%) rename {l1macros => automation}/merge_both.py (100%) rename {l1macros => automation}/merge_per_era.py (84%) rename {l1macros => automation}/merge_per_run.py (79%) create mode 100644 automation/queue.txt rename {htcondor => automation}/submit.txt (90%) rename {l1macros => automation}/utils.py (59%) rename {htcondor => automation}/wrapper.py (100%) delete mode 100755 htcondor/copy.sh delete mode 100644 l1macros/cleanup.py diff --git a/l1macros/config.yaml b/automation/config.yaml similarity index 100% rename from l1macros/config.yaml rename to automation/config.yaml diff --git a/l1macros/make_hists.py b/automation/make_hists.py similarity index 79% rename from l1macros/make_hists.py rename to automation/make_hists.py index a1482f4..1a188a9 100644 --- a/l1macros/make_hists.py +++ b/automation/make_hists.py @@ -2,7 +2,7 @@ import os, sys, subprocess, yaml, argparse from glob import glob -from utils import run_script, write_queue, parse_file +from utils import write_queue, parse_file, run_command path_prefix = "/eos/cms/tier0/store/data" @@ -43,7 +43,11 @@ print(f"Skipping {out_web_path} - already processed") continue - for script in config["scripts"]: + for cmd in config["scripts"]: + cmd = cmd.replace("$OUTDIR", out_web_path) + cmd = cmd.replace("$INFILE", fname) + os.makedirs(out_web_path, exist_ok=True) - if local: run_script(script, fname, out_web_path) # run script on current shell - else: write_queue(script, fname, out_web_path) # write script into htcondor queue file + + if local: run_command(cmd, out_web_path+"/log.txt") # run script on current shell + else: write_queue(cmd) # write script into htcondor queue file diff --git a/l1macros/make_plots.py b/automation/make_plots.py similarity index 52% rename from l1macros/make_plots.py rename to automation/make_plots.py index 1871be4..9c62a6a 100644 --- a/l1macros/make_plots.py +++ b/automation/make_plots.py @@ -2,7 +2,7 @@ import os, argparse, yaml from glob import glob -from utils import run_script, write_queue +from utils import run_command, write_queue dqm_prefix = "/eos/user/l/lebeling/www/DQM/" # "/eos/cms/store/group/dpg_trigger/comm_trigger/L1Trigger/cmsl1dpg/www/DQM/T0PromptNanoMonit/" @@ -25,8 +25,25 @@ merged_dirs = glob(pattern, recursive=True) for merged_dir in merged_dirs: - for script in config["plotting"]: + for cmd in config["plotting"]: print(80*"#"+'\n'+f"plotting for {merged_dir}") os.makedirs(merged_dir + '/plotsL1Run3', exist_ok=True) - if local: run_script(script, "", merged_dir) - else: write_queue(script, "", merged_dir) \ No newline at end of file + + # if directory is non empty get time of newst file + if os.listdir(merged_dir): + newest = max(glob(merged_dir + '/*.root'), key=os.path.getctime) + time_root = os.path.getctime(newest) + else: time_root = 0 + + # if /plotsL1Run3 is non empty get time of newst png file + if os.listdir(merged_dir + '/plotsL1Run3'): + newest = max(glob(merged_dir + '/plotsL1Run3/*.png'), key=os.path.getctime) + time_png = os.path.getctime(newest) + else: time_png = 0 + + if time_png > time_root: continue + + cmd = cmd.replace("$OUTDIR", merged_dir) + print(cmd) + if local: run_command(cmd) + else: write_queue(cmd) diff --git a/l1macros/merge_both.py b/automation/merge_both.py similarity index 100% rename from l1macros/merge_both.py rename to automation/merge_both.py diff --git a/l1macros/merge_per_era.py b/automation/merge_per_era.py similarity index 84% rename from l1macros/merge_per_era.py rename to automation/merge_per_era.py index 00a05af..8aa0550 100644 --- a/l1macros/merge_per_era.py +++ b/automation/merge_per_era.py @@ -2,7 +2,7 @@ import os, argparse from glob import glob -from utils import run_script, write_queue, get_weeks +from utils import hadd, get_weeks #dqm_prefix = "/eos/cms/store/group/dpg_trigger/comm_trigger/L1Trigger/cmsl1dpg/www/DQM/T0PromptNanoMonit" @@ -56,10 +56,4 @@ # Hadd grouped files for target, files in file_groups.items(): - print(f"Hadding files with target {target}") - os.makedirs(os.path.dirname(target), exist_ok=True) - cmd = f'hadd -f {target} ' + ' '.join(files) - if local: run_script(cmd) - else: write_queue(cmd) - -# TODO skip files in filelist.txt \ No newline at end of file + hadd(target, files, local) diff --git a/l1macros/merge_per_run.py b/automation/merge_per_run.py similarity index 79% rename from l1macros/merge_per_run.py rename to automation/merge_per_run.py index fcfb0fe..6008c25 100644 --- a/l1macros/merge_per_run.py +++ b/automation/merge_per_run.py @@ -2,7 +2,7 @@ import os, argparse from glob import glob -from utils import run_script, write_queue +from utils import hadd dqm_prefix = "/eos/cms/store/group/dpg_trigger/comm_trigger/L1Trigger/cmsl1dpg/www/DQM/T0PromptNanoMonit" @@ -39,10 +39,4 @@ # Hadd grouped files for target, files in file_groups.items(): - print(f"Hadding files with target {target}") - os.makedirs(os.path.dirname(target), exist_ok=True) - cmd = f'hadd -f {target} ' + ' '.join(files) - if local: run_script(cmd) - else: write_queue(cmd) - -# TODO skip files in filelist.txt \ No newline at end of file + hadd(target, files, local) diff --git a/automation/queue.txt b/automation/queue.txt new file mode 100644 index 0000000..b409ca3 --- /dev/null +++ b/automation/queue.txt @@ -0,0 +1,5559 @@ +python3___../plotting/make_DiJet_plots.py___--dir___/eos/user/l/lebeling/www/DQM/JetMET/merged___--config___../config_cards/full_DiJet.yaml +python3___../plotting/make_DiJet_plots.py___--dir___/eos/user/l/lebeling/www/DQM/JetMET/Run2024E/merged___--config___../config_cards/full_DiJet.yaml +python3___../plotting/make_DiJet_plots.py___--dir___/eos/user/l/lebeling/www/DQM/JetMET/Run2024E/JetMET0/PromptReco-v2/381384/merged___--config___../config_cards/full_DiJet.yaml +python3___../plotting/make_DiJet_plots.py___--dir___/eos/user/l/lebeling/www/DQM/JetMET/Run2024E/JetMET0/PromptReco-v2/381417/merged___--config___../config_cards/full_DiJet.yaml +python3___../plotting/make_DiJet_plots.py___--dir___/eos/user/l/lebeling/www/DQM/JetMET/Run2024E/JetMET0/PromptReco-v2/381443/merged___--config___../config_cards/full_DiJet.yaml +python3___../plotting/make_DiJet_plots.py___--dir___/eos/user/l/lebeling/www/DQM/JetMET/Run2024E/JetMET0/PromptReco-v2/381458/merged___--config___../config_cards/full_DiJet.yaml +python3___../plotting/make_DiJet_plots.py___--dir___/eos/user/l/lebeling/www/DQM/JetMET/Run2024E/JetMET0/PromptReco-v2/381464/merged___--config___../config_cards/full_DiJet.yaml +python3___../plotting/make_DiJet_plots.py___--dir___/eos/user/l/lebeling/www/DQM/JetMET/Run2024E/JetMET0/PromptReco-v2/381465/merged___--config___../config_cards/full_DiJet.yaml +python3___../plotting/make_DiJet_plots.py___--dir___/eos/user/l/lebeling/www/DQM/JetMET/Run2024E/JetMET0/PromptReco-v2/381477/merged___--config___../config_cards/full_DiJet.yaml +python3___../plotting/make_DiJet_plots.py___--dir___/eos/user/l/lebeling/www/DQM/JetMET/Run2024E/JetMET0/PromptReco-v2/381478/merged___--config___../config_cards/full_DiJet.yaml +python3___../plotting/make_DiJet_plots.py___--dir___/eos/user/l/lebeling/www/DQM/JetMET/Run2024E/JetMET0/PromptReco-v2/381479/merged___--config___../config_cards/full_DiJet.yaml +python3___../plotting/make_DiJet_plots.py___--dir___/eos/user/l/lebeling/www/DQM/JetMET/Run2024E/JetMET0/PromptReco-v2/381480/merged___--config___../config_cards/full_DiJet.yaml +python3___../plotting/make_DiJet_plots.py___--dir___/eos/user/l/lebeling/www/DQM/JetMET/Run2024E/JetMET0/PromptReco-v2/381484/merged___--config___../config_cards/full_DiJet.yaml +python3___../plotting/make_DiJet_plots.py___--dir___/eos/user/l/lebeling/www/DQM/JetMET/Run2024E/JetMET0/PromptReco-v2/381499/merged___--config___../config_cards/full_DiJet.yaml +python3___../plotting/make_DiJet_plots.py___--dir___/eos/user/l/lebeling/www/DQM/JetMET/Run2024E/JetMET0/PromptReco-v2/381500/merged___--config___../config_cards/full_DiJet.yaml +python3___../plotting/make_DiJet_plots.py___--dir___/eos/user/l/lebeling/www/DQM/JetMET/Run2024E/JetMET0/PromptReco-v2/381515/merged___--config___../config_cards/full_DiJet.yaml +python3___../plotting/make_DiJet_plots.py___--dir___/eos/user/l/lebeling/www/DQM/JetMET/Run2024E/JetMET0/PromptReco-v2/381516/merged___--config___../config_cards/full_DiJet.yaml +python3___../plotting/make_DiJet_plots.py___--dir___/eos/user/l/lebeling/www/DQM/JetMET/Run2024E/JetMET0/PromptReco-v2/381542/merged___--config___../config_cards/full_DiJet.yaml +python3___../plotting/make_DiJet_plots.py___--dir___/eos/user/l/lebeling/www/DQM/JetMET/Run2024E/JetMET0/PromptReco-v2/381543/merged___--config___../config_cards/full_DiJet.yaml +python3___../plotting/make_DiJet_plots.py___--dir___/eos/user/l/lebeling/www/DQM/JetMET/Run2024E/JetMET0/PromptReco-v2/381544/merged___--config___../config_cards/full_DiJet.yaml +python3___../plotting/make_DiJet_plots.py___--dir___/eos/user/l/lebeling/www/DQM/JetMET/Run2024E/JetMET0/PromptReco-v2/381594/merged___--config___../config_cards/full_DiJet.yaml +python3___../plotting/make_DiJet_plots.py___--dir___/eos/user/l/lebeling/www/DQM/JetMET/Run2024E/JetMET1/PromptReco-v1/381371/merged___--config___../config_cards/full_DiJet.yaml +python3___../plotting/make_DiJet_plots.py___--dir___/eos/user/l/lebeling/www/DQM/JetMET/Run2024E/week_22/merged___--config___../config_cards/full_DiJet.yaml +python3___../plotting/make_DiJet_plots.py___--dir___/eos/user/l/lebeling/www/DQM/JetMET/Run2024E/week_23/merged___--config___../config_cards/full_DiJet.yaml +python3___../plotting/make_DiJet_plots.py___--dir___/eos/user/l/lebeling/www/DQM/JetMET/Run2024F/merged___--config___../config_cards/full_DiJet.yaml +python3___../plotting/make_DiJet_plots.py___--dir___/eos/user/l/lebeling/www/DQM/JetMET/Run2024F/JetMET0/PromptReco-v1/381946/merged___--config___../config_cards/full_DiJet.yaml +python3___../plotting/make_DiJet_plots.py___--dir___/eos/user/l/lebeling/www/DQM/JetMET/Run2024F/JetMET0/PromptReco-v1/382003/merged___--config___../config_cards/full_DiJet.yaml +python3___../plotting/make_DiJet_plots.py___--dir___/eos/user/l/lebeling/www/DQM/JetMET/Run2024F/JetMET0/PromptReco-v1/382004/merged___--config___../config_cards/full_DiJet.yaml +python3___../plotting/make_DiJet_plots.py___--dir___/eos/user/l/lebeling/www/DQM/JetMET/Run2024F/JetMET0/PromptReco-v1/382010/merged___--config___../config_cards/full_DiJet.yaml +python3___../plotting/make_DiJet_plots.py___--dir___/eos/user/l/lebeling/www/DQM/JetMET/Run2024F/JetMET0/PromptReco-v1/382013/merged___--config___../config_cards/full_DiJet.yaml +python3___../plotting/make_DiJet_plots.py___--dir___/eos/user/l/lebeling/www/DQM/JetMET/Run2024F/JetMET0/PromptReco-v1/382014/merged___--config___../config_cards/full_DiJet.yaml +python3___../plotting/make_DiJet_plots.py___--dir___/eos/user/l/lebeling/www/DQM/JetMET/Run2024F/JetMET0/PromptReco-v1/382036/merged___--config___../config_cards/full_DiJet.yaml +python3___../plotting/make_DiJet_plots.py___--dir___/eos/user/l/lebeling/www/DQM/JetMET/Run2024F/JetMET0/PromptReco-v1/382037/merged___--config___../config_cards/full_DiJet.yaml +python3___../plotting/make_DiJet_plots.py___--dir___/eos/user/l/lebeling/www/DQM/JetMET/Run2024F/JetMET0/PromptReco-v1/382040/merged___--config___../config_cards/full_DiJet.yaml +python3___../plotting/make_DiJet_plots.py___--dir___/eos/user/l/lebeling/www/DQM/JetMET/Run2024F/JetMET0/PromptReco-v1/382046/merged___--config___../config_cards/full_DiJet.yaml +python3___../plotting/make_DiJet_plots.py___--dir___/eos/user/l/lebeling/www/DQM/JetMET/Run2024F/JetMET0/PromptReco-v1/382047/merged___--config___../config_cards/full_DiJet.yaml +python3___../plotting/make_DiJet_plots.py___--dir___/eos/user/l/lebeling/www/DQM/JetMET/Run2024F/JetMET0/PromptReco-v1/382054/merged___--config___../config_cards/full_DiJet.yaml +python3___../plotting/make_DiJet_plots.py___--dir___/eos/user/l/lebeling/www/DQM/JetMET/Run2024F/JetMET0/PromptReco-v1/382063/merged___--config___../config_cards/full_DiJet.yaml +python3___../plotting/make_DiJet_plots.py___--dir___/eos/user/l/lebeling/www/DQM/JetMET/Run2024F/JetMET0/PromptReco-v1/382064/merged___--config___../config_cards/full_DiJet.yaml +python3___../plotting/make_DiJet_plots.py___--dir___/eos/user/l/lebeling/www/DQM/JetMET/Run2024F/JetMET0/PromptReco-v1/382070/merged___--config___../config_cards/full_DiJet.yaml +python3___../plotting/make_DiJet_plots.py___--dir___/eos/user/l/lebeling/www/DQM/JetMET/Run2024F/JetMET0/PromptReco-v1/382074/merged___--config___../config_cards/full_DiJet.yaml +python3___../plotting/make_DiJet_plots.py___--dir___/eos/user/l/lebeling/www/DQM/JetMET/Run2024F/JetMET0/PromptReco-v1/382075/merged___--config___../config_cards/full_DiJet.yaml +python3___../plotting/make_DiJet_plots.py___--dir___/eos/user/l/lebeling/www/DQM/JetMET/Run2024F/JetMET0/PromptReco-v1/382159/merged___--config___../config_cards/full_DiJet.yaml +python3___../plotting/make_DiJet_plots.py___--dir___/eos/user/l/lebeling/www/DQM/JetMET/Run2024F/JetMET0/PromptReco-v1/382160/merged___--config___../config_cards/full_DiJet.yaml 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+python3___../plotting/make_ZToMuMu_plots.py___--dir___/eos/user/l/lebeling/www/DQM/Muon/Run2024I/week_40/merged___--config___../config_cards/full_ZToMuMu.yaml +python3___../plotting/make_ZToTauTau_plots.py___--dir___/eos/user/l/lebeling/www/DQM/Muon/Run2024I/week_40/merged___--config___../config_cards/full_ZToTauTau.yaml +python3___../plotting/make_MuonJet_plots.py___--dir___/eos/user/l/lebeling/www/DQM/Muon/Run2024I/week_40/merged___--config___../config_cards/full_MuonJet.yaml +python3___../plotting/make_ZToMuMu_plots.py___--dir___/eos/user/l/lebeling/www/DQM/Muon/Run2024I/week_41/merged___--config___../config_cards/full_ZToMuMu.yaml +python3___../plotting/make_ZToTauTau_plots.py___--dir___/eos/user/l/lebeling/www/DQM/Muon/Run2024I/week_41/merged___--config___../config_cards/full_ZToTauTau.yaml +python3___../plotting/make_MuonJet_plots.py___--dir___/eos/user/l/lebeling/www/DQM/Muon/Run2024I/week_41/merged___--config___../config_cards/full_MuonJet.yaml +python3___../plotting/make_ZToMuMu_plots.py___--dir___/eos/user/l/lebeling/www/DQM/Muon/Run2024I/week_42/merged___--config___../config_cards/full_ZToMuMu.yaml +python3___../plotting/make_ZToTauTau_plots.py___--dir___/eos/user/l/lebeling/www/DQM/Muon/Run2024I/week_42/merged___--config___../config_cards/full_ZToTauTau.yaml +python3___../plotting/make_MuonJet_plots.py___--dir___/eos/user/l/lebeling/www/DQM/Muon/Run2024I/week_42/merged___--config___../config_cards/full_MuonJet.yaml diff --git a/htcondor/submit.txt b/automation/submit.txt similarity index 90% rename from htcondor/submit.txt rename to automation/submit.txt index 125168e..ce82895 100644 --- a/htcondor/submit.txt +++ b/automation/submit.txt @@ -5,6 +5,8 @@ error = logs/$(ClusterId).$(ProcId).err log = logs/$(ClusterId).$(ProcId).log +JobFlavour = espresso +should_transfer_files = yes +when_to_transfer_output = on_exit #output_destination = root://eosuser.cern.ch/$(path) #should_transfer_files = YES diff --git a/l1macros/utils.py b/automation/utils.py similarity index 59% rename from l1macros/utils.py rename to automation/utils.py index 5c6637a..8c4a458 100644 --- a/l1macros/utils.py +++ b/automation/utils.py @@ -3,18 +3,11 @@ script_dir = os.getcwd() -def run_script(script, infile = "", outdir = ""): - infile = 'root://eoscms.cern.ch/' + infile - os.chdir(script_dir) - os.makedirs(outdir, exist_ok=True) - cmd = script.replace("$INFILE", infile).replace("$OUTDIR", outdir) - log_file = script.split(' ')[1] - log_file = log_file.split('/')[-1] - log_file = outdir + "/" + log_file.replace(".py", ".log") - - with open(log_file, "w") as f: - subprocess.run(cmd, shell=True, stdout=f, stderr=f) +def run_command(cmd, log_file = "log.txt"): + os.chdir(script_dir) + with open(log_file, "a") as f: + subprocess.run(cmd, shell=True, stdout=f, stderr=f) def parse_file(fname): @@ -37,16 +30,6 @@ def write_queue(script, infile = "", outdir = ""): with open("../htcondor/queue.txt", "a") as f: f.write(cmd + "\n") -# def write_queue(script, infile, outdir): -# script = script.replace("$OUTDIR/", "") -# strings = script.split(" ") -# script = strings[1] -# outfile = strings[5] -# option = strings[-1] -# infile = "root://eoscms.cern.ch/" + infile - -# with open("../htcondor/hists.txt", "a") as f: -# f.write(script + ", " + infile + ", " + outfile + ", " + option + ", " + outdir + "\n") def get_weeks(): oms_path = "/eos/cms/store/group/tsg/STEAM/OMSRateNtuple/2024/physics.root" @@ -63,3 +46,33 @@ def get_weeks(): result_dict[row['run']] = row['week'] return result_dict + + +def load_filelist(path): + try: + with open(path, "r") as f: + return [line.strip() for line in f.readlines()] + except FileNotFoundError: return [] + + +def save_filelist(path, files): + with open(path, "w") as f: + for file in files: + f.write(file + "\n") + + +def hadd(target, files, local): + os.makedirs(os.path.dirname(target), exist_ok=True) + + filelist = load_filelist(target.replace('root','txt')) + + if set(filelist) == set(files): + print('skipping ' + target, "already hadded") + return + + save_filelist(target.replace('root','txt'), files) + + print(f"Hadding files with target {target}") + cmd = f'hadd -f {target} ' + ' '.join(files) + if local: run_command(cmd, os.path.dirname(target)+"/log.txt") + else: write_queue(cmd) diff --git a/htcondor/wrapper.py b/automation/wrapper.py similarity index 100% rename from htcondor/wrapper.py rename to automation/wrapper.py diff --git a/htcondor/copy.sh b/htcondor/copy.sh deleted file mode 100755 index 3f7176f..0000000 --- a/htcondor/copy.sh +++ /dev/null @@ -1,6 +0,0 @@ -#!/bin/bash - -pwd -ls -a -#cp foo.txt /afs/cern.ch/user/l/lebeling/MacrosNtuples/. -cp ~/output /eos/user/l/lebeling/. \ No newline at end of file diff --git a/l1macros/cleanup.py b/l1macros/cleanup.py deleted file mode 100644 index 7477eec..0000000 --- a/l1macros/cleanup.py +++ /dev/null @@ -1,15 +0,0 @@ -#!/bin/python3 - -import glob -import os - -base_path = '/eos/home-l/lebeling/www/DQM' - -subdirectories = glob.glob("/eos/home-l/lebeling/www/DQM/*/*/PromptReco-v*/*/*/") - -# script to delete every subdirectory that does not contain any .root files -for subdirectory in subdirectories: - files = glob.glob(os.path.join(subdirectory, "*.root")) - if len(files) == 0: - print(f"Deleting subdirectory: {subdirectory}") - #os.system(f"rm -rf {subdirectory}") From bf618765776863509fd1f834e0791f0237875a16 Mon Sep 17 00:00:00 2001 From: LukasEbeling Date: Tue, 3 Dec 2024 16:11:00 +0100 Subject: [PATCH 28/76] directories added --- automation/utils.py | 5 ++++- 1 file changed, 4 insertions(+), 1 deletion(-) diff --git a/automation/utils.py b/automation/utils.py index 8c4a458..8a52401 100644 --- a/automation/utils.py +++ b/automation/utils.py @@ -1,7 +1,10 @@ import os, subprocess, uproot import pandas as pd -script_dir = os.getcwd() +script_dir = os.path.join(os.getcwd(), "../l1macros") +dqm_prefix = "/eos/user/l/lebeling/www/DQM" +out_prefix = "/eos/user/l/lebeling/www/DQM" +tier0 = "/eos/cms/tier0/store/data" def run_command(cmd, log_file = "log.txt"): From eb7b3b88353d74979b40c5dea5f4deec9224d3f8 Mon Sep 17 00:00:00 2001 From: LukasEbeling Date: Tue, 3 Dec 2024 16:11:07 +0100 Subject: [PATCH 29/76] not needed --- automation/merge_both.py | 62 ---------------------------------------- 1 file changed, 62 deletions(-) delete mode 100644 automation/merge_both.py diff --git a/automation/merge_both.py b/automation/merge_both.py deleted file mode 100644 index 86fed8f..0000000 --- a/automation/merge_both.py +++ /dev/null @@ -1,62 +0,0 @@ -#!/bin/python3 - -import os, argparse -from glob import glob -from utils import run_script, write_queue - - -#dqm_prefix = "/eos/cms/store/group/dpg_trigger/comm_trigger/L1Trigger/cmsl1dpg/www/DQM/T0PromptNanoMonit" -dqm_prefix = "/eos/user/l/lebeling/www/DQM" -out_prefix = "/eos/user/l/lebeling/www/DQM" - - -# parse arguments -parser = argparse.ArgumentParser(description="merge per era") -parser.add_argument('--local', action='store_true', help='run locally (not on condor)') -args = parser.parse_args() -local = args.local - -if not local: os.system('rm -rf ../htcondor/queue.txt') - -# collect all histogram root files -all_files = glob(f"{dqm_prefix}/*/*/*/*/*/*/*.root") -print('found files:', len(all_files)) - - -# group files by runnum, by era, and by year -file_groups = {} -for file in all_files: - parts = file.split('/') - filename = parts[-1] - filehash = parts[-2] - era = parts[-6] - label = parts[-7] - - # group by runnum - target = file.replace(filehash, "merged") - if target not in file_groups: - file_groups[target] = [] - file_groups[target].append(file) - - # group by era - target = f"{out_prefix}/{label}/{era}/merged/{filename}" - if target not in file_groups: - file_groups[target] = [] - file_groups[target].append(file) - - # group by year - target = f"{out_prefix}/{label}/merged/{filename}" - if target not in file_groups: - file_groups[target] = [] - file_groups[target].append(file) - - -# Hadd grouped files -for target, files in file_groups.items(): - print(f"Hadding files with target {target}") - os.makedirs(os.path.dirname(target), exist_ok=True) - cmd = f'hadd -f {target} ' + ' '.join(files) - if local: run_script(cmd) - else: write_queue(cmd) - -# TODO skip files in filelist.txt \ No newline at end of file From 170eabd77cfdf29685ae5e5a15dcbac9c0a70832 Mon Sep 17 00:00:00 2001 From: LukasEbeling Date: Wed, 4 Dec 2024 09:45:37 +0100 Subject: [PATCH 30/76] path to queue.txt changed --- automation/utils.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/automation/utils.py b/automation/utils.py index 8a52401..1508ba0 100644 --- a/automation/utils.py +++ b/automation/utils.py @@ -30,7 +30,7 @@ def parse_file(fname): def write_queue(script, infile = "", outdir = ""): cmd = script.replace("$INFILE", infile).replace("$OUTDIR", outdir) cmd = cmd.replace(" ", "___") - with open("../htcondor/queue.txt", "a") as f: + with open("queue.txt", "a") as f: f.write(cmd + "\n") From e24e41f8bdd184315e1b471ed576dd225ce81eb7 Mon Sep 17 00:00:00 2001 From: LukasEbeling Date: Wed, 4 Dec 2024 09:48:03 +0100 Subject: [PATCH 31/76] init file to generate tar file of repo (submitted to htcondor) --- automation/condor_init.sh | 5 +++++ 1 file changed, 5 insertions(+) create mode 100644 automation/condor_init.sh diff --git a/automation/condor_init.sh b/automation/condor_init.sh new file mode 100644 index 0000000..f5941ec --- /dev/null +++ b/automation/condor_init.sh @@ -0,0 +1,5 @@ +#!/bin/bash + +cd ../.. +tar -czvf "MacrosNtuples.tar.gz" "MacrosNtuples" +cd MacrosNtuples/automation From b01d3a5fb1e1970b33e5a760ba2cfce211d7e959 Mon Sep 17 00:00:00 2001 From: LukasEbeling Date: Wed, 4 Dec 2024 10:31:34 +0100 Subject: [PATCH 32/76] paths adjusted --- automation/config.yaml | 24 ++++++++++++------------ 1 file changed, 12 insertions(+), 12 deletions(-) diff --git a/automation/config.yaml b/automation/config.yaml index ec3151d..d08e549 100644 --- a/automation/config.yaml +++ b/automation/config.yaml @@ -5,7 +5,7 @@ JetMET: eras: - 'Run2024*' scripts: - - 'python3 performances_nano.py -i $INFILE -o $OUTDIR/all_DiJet.root -c DiJet' + - 'python3 ../l1macros/performances_nano.py -i $INFILE -o $OUTDIR/all_DiJet.root -c DiJet' plotting: - 'python3 ../plotting/make_DiJet_plots.py --dir $OUTDIR --config ../config_cards/full_DiJet.yaml' @@ -16,9 +16,9 @@ EGamma: eras: - 'Run2024*' scripts: - - 'python3 performances_nano.py -i $INFILE -o $OUTDIR/all_PhotonJet.root -c PhotonJet' - - 'python3 performances_nano.py -i $INFILE -o $OUTDIR/all_ZToEE.root -c ZToEE' - - 'python3 performances_nano_dqmoff.py -i $INFILE -o $OUTDIR/oug_zee_dqmoff.root -c ZToEEDQMOff' + - 'python3 ../l1macros/performances_nano.py -i $INFILE -o $OUTDIR/all_PhotonJet.root -c PhotonJet' + - 'python3 ../l1macros/performances_nano.py -i $INFILE -o $OUTDIR/all_ZToEE.root -c ZToEE' + - 'python3 ../l1macros/performances_nano_dqmoff.py -i $INFILE -o $OUTDIR/oug_zee_dqmoff.root -c ZToEEDQMOff' plotting: - 'python3 ../plotting/make_ZToEE_plots.py --dir $OUTDIR --config ../config_cards/full_ZToEE.yaml' - 'python3 ../plotting/make_PhotonJet_plots.py --dir $OUTDIR --config ../config_cards/full_PhotonJet.yaml' @@ -30,14 +30,14 @@ Muon: eras: - 'Run2024*' scripts: - - 'python3 performances_nano.py -i $INFILE -o $OUTDIR/all_ZToMuMu.root -c ZToMuMu' - - 'python3 performances_nano.py -i $INFILE -o $OUTDIR/all_MuonJet.root -c MuonJet' #TODO not working - - 'python3 performances_nano.py -i $INFILE -o $OUTDIR/all_ZToTauTau.root -c ZToTauTau' - - 'python3 performances_nano_dqmoff.py -i $INFILE -o $OUTDIR/out_zmumu_dqmoffl.root -c ZToMuMuDQMOff' - - 'python3 performances_nano_dqmoff.py -i $INFILE -o $OUTDIR/out_jets_dqmoff.root -c JetsDQMOff' - - 'python3 performances_nano_dqmoff.py -i $INFILE -o $OUTDIR/out_ztautau_dqmoff.root -c ZToTauTauDQMOff' - - 'python3 performances_nano_dqmoff.py -i $INFILE -o $OUTDIR/out_zmumu_dqmoffl.root -c ZToMuMuDQMOff' - - 'python3 performances_nano_dqmoff.py -i $INFILE -o $OUTDIR/out_etsum_dqmoff.root -c EtSumDQMOff' + - 'python3 ../l1macros/performances_nano.py -i $INFILE -o $OUTDIR/all_ZToMuMu.root -c ZToMuMu' + - 'python3 ../l1macros/performances_nano.py -i $INFILE -o $OUTDIR/all_MuonJet.root -c MuonJet' #TODO not working + - 'python3 ../l1macros/performances_nano.py -i $INFILE -o $OUTDIR/all_ZToTauTau.root -c ZToTauTau' + - 'python3 ../l1macros/performances_nano_dqmoff.py -i $INFILE -o $OUTDIR/out_zmumu_dqmoffl.root -c ZToMuMuDQMOff' + - 'python3 ../l1macros/performances_nano_dqmoff.py -i $INFILE -o $OUTDIR/out_jets_dqmoff.root -c JetsDQMOff' + - 'python3 ../l1macros/performances_nano_dqmoff.py -i $INFILE -o $OUTDIR/out_ztautau_dqmoff.root -c ZToTauTauDQMOff' + - 'python3 ../l1macros/performances_nano_dqmoff.py -i $INFILE -o $OUTDIR/out_zmumu_dqmoffl.root -c ZToMuMuDQMOff' + - 'python3 ../l1macros/performances_nano_dqmoff.py -i $INFILE -o $OUTDIR/out_etsum_dqmoff.root -c EtSumDQMOff' plotting: - 'python3 ../plotting/make_ZToMuMu_plots.py --dir $OUTDIR --config ../config_cards/full_ZToMuMu.yaml' - 'python3 ../plotting/make_ZToTauTau_plots.py --dir $OUTDIR --config ../config_cards/full_ZToTauTau.yaml' From 31c99d64ed1875f9b8c1606c90394edd88b3a093 Mon Sep 17 00:00:00 2001 From: LukasEbeling Date: Wed, 4 Dec 2024 12:40:30 +0100 Subject: [PATCH 33/76] clean up --- automation/make_hists.py | 22 ++++++++-------------- 1 file changed, 8 insertions(+), 14 deletions(-) diff --git a/automation/make_hists.py b/automation/make_hists.py index 1a188a9..e6e511b 100644 --- a/automation/make_hists.py +++ b/automation/make_hists.py @@ -2,23 +2,17 @@ import os, sys, subprocess, yaml, argparse from glob import glob -from utils import write_queue, parse_file, run_command +from utils import write_queue, parse_file, run_command, tier0, dqm_prefix - -path_prefix = "/eos/cms/tier0/store/data" -out_prefix = "/eos/user/l/lebeling/www/DQM/" # "/eos/cms/store/group/dpg_trigger/comm_trigger/L1Trigger/cmsl1dpg/www/DQM/T0PromptNanoMonit/" -script_dir = os.getcwd() config_dict = yaml.safe_load(open('config.yaml', 'r')) - # parse arguments parser = argparse.ArgumentParser(description="Run plots for datasets") -parser.add_argument('--local', action='store_true', help='run locally (not on condor)') +parser.add_argument('--htcondor', action='store_true', help='run on htcondor') args = parser.parse_args() -local = args.local - -if not local: os.system('rm -rf ../htcondor/queue.txt') +htcondor = args.htcondor +if htcondor: os.system('rm -rf queue.txt') # main logic: glob files on tier 0 and run plotting scripts for label, config in config_dict.items(): @@ -28,14 +22,14 @@ fnames = [] for dataset in config["datasets"]: for era in config["eras"]: - fnames += glob(f"{path_prefix}/{era}/{dataset}/NANOAOD/PromptReco-v*/*/*/*/*/*.root") + fnames += glob(f"{tier0}/{era}/{dataset}/NANOAOD/PromptReco-v*/*/*/*/*/*.root") # step 2 - for each file, run scripts # fnames = fnames[:100] for fname in fnames: print(f"Processing file {fname}") - out_web_path = out_prefix + parse_file(fname) + out_web_path = dqm_prefix + parse_file(fname) if os.path.exists(out_web_path): root_files = glob(f"{out_web_path}/*.root") @@ -49,5 +43,5 @@ os.makedirs(out_web_path, exist_ok=True) - if local: run_command(cmd, out_web_path+"/log.txt") # run script on current shell - else: write_queue(cmd) # write script into htcondor queue file + if htcondor: write_queue(cmd) # write script into htcondor queue file + else: run_command(cmd, out_web_path+"/log.txt") # run script on current shell From ff025d2f19a063bfd07e9a54d4164bdf576b6564 Mon Sep 17 00:00:00 2001 From: LukasEbeling Date: Wed, 4 Dec 2024 12:42:27 +0100 Subject: [PATCH 34/76] added to ignore file --- automation/queue.txt | 5559 ------------------------------------------ 1 file changed, 5559 deletions(-) delete mode 100644 automation/queue.txt diff --git a/automation/queue.txt b/automation/queue.txt deleted file mode 100644 index b409ca3..0000000 --- a/automation/queue.txt +++ /dev/null @@ -1,5559 +0,0 @@ -python3___../plotting/make_DiJet_plots.py___--dir___/eos/user/l/lebeling/www/DQM/JetMET/merged___--config___../config_cards/full_DiJet.yaml -python3___../plotting/make_DiJet_plots.py___--dir___/eos/user/l/lebeling/www/DQM/JetMET/Run2024E/merged___--config___../config_cards/full_DiJet.yaml -python3___../plotting/make_DiJet_plots.py___--dir___/eos/user/l/lebeling/www/DQM/JetMET/Run2024E/JetMET0/PromptReco-v2/381384/merged___--config___../config_cards/full_DiJet.yaml -python3___../plotting/make_DiJet_plots.py___--dir___/eos/user/l/lebeling/www/DQM/JetMET/Run2024E/JetMET0/PromptReco-v2/381417/merged___--config___../config_cards/full_DiJet.yaml -python3___../plotting/make_DiJet_plots.py___--dir___/eos/user/l/lebeling/www/DQM/JetMET/Run2024E/JetMET0/PromptReco-v2/381443/merged___--config___../config_cards/full_DiJet.yaml -python3___../plotting/make_DiJet_plots.py___--dir___/eos/user/l/lebeling/www/DQM/JetMET/Run2024E/JetMET0/PromptReco-v2/381458/merged___--config___../config_cards/full_DiJet.yaml -python3___../plotting/make_DiJet_plots.py___--dir___/eos/user/l/lebeling/www/DQM/JetMET/Run2024E/JetMET0/PromptReco-v2/381464/merged___--config___../config_cards/full_DiJet.yaml -python3___../plotting/make_DiJet_plots.py___--dir___/eos/user/l/lebeling/www/DQM/JetMET/Run2024E/JetMET0/PromptReco-v2/381465/merged___--config___../config_cards/full_DiJet.yaml -python3___../plotting/make_DiJet_plots.py___--dir___/eos/user/l/lebeling/www/DQM/JetMET/Run2024E/JetMET0/PromptReco-v2/381477/merged___--config___../config_cards/full_DiJet.yaml -python3___../plotting/make_DiJet_plots.py___--dir___/eos/user/l/lebeling/www/DQM/JetMET/Run2024E/JetMET0/PromptReco-v2/381478/merged___--config___../config_cards/full_DiJet.yaml -python3___../plotting/make_DiJet_plots.py___--dir___/eos/user/l/lebeling/www/DQM/JetMET/Run2024E/JetMET0/PromptReco-v2/381479/merged___--config___../config_cards/full_DiJet.yaml -python3___../plotting/make_DiJet_plots.py___--dir___/eos/user/l/lebeling/www/DQM/JetMET/Run2024E/JetMET0/PromptReco-v2/381480/merged___--config___../config_cards/full_DiJet.yaml -python3___../plotting/make_DiJet_plots.py___--dir___/eos/user/l/lebeling/www/DQM/JetMET/Run2024E/JetMET0/PromptReco-v2/381484/merged___--config___../config_cards/full_DiJet.yaml -python3___../plotting/make_DiJet_plots.py___--dir___/eos/user/l/lebeling/www/DQM/JetMET/Run2024E/JetMET0/PromptReco-v2/381499/merged___--config___../config_cards/full_DiJet.yaml -python3___../plotting/make_DiJet_plots.py___--dir___/eos/user/l/lebeling/www/DQM/JetMET/Run2024E/JetMET0/PromptReco-v2/381500/merged___--config___../config_cards/full_DiJet.yaml -python3___../plotting/make_DiJet_plots.py___--dir___/eos/user/l/lebeling/www/DQM/JetMET/Run2024E/JetMET0/PromptReco-v2/381515/merged___--config___../config_cards/full_DiJet.yaml -python3___../plotting/make_DiJet_plots.py___--dir___/eos/user/l/lebeling/www/DQM/JetMET/Run2024E/JetMET0/PromptReco-v2/381516/merged___--config___../config_cards/full_DiJet.yaml -python3___../plotting/make_DiJet_plots.py___--dir___/eos/user/l/lebeling/www/DQM/JetMET/Run2024E/JetMET0/PromptReco-v2/381542/merged___--config___../config_cards/full_DiJet.yaml -python3___../plotting/make_DiJet_plots.py___--dir___/eos/user/l/lebeling/www/DQM/JetMET/Run2024E/JetMET0/PromptReco-v2/381543/merged___--config___../config_cards/full_DiJet.yaml -python3___../plotting/make_DiJet_plots.py___--dir___/eos/user/l/lebeling/www/DQM/JetMET/Run2024E/JetMET0/PromptReco-v2/381544/merged___--config___../config_cards/full_DiJet.yaml -python3___../plotting/make_DiJet_plots.py___--dir___/eos/user/l/lebeling/www/DQM/JetMET/Run2024E/JetMET0/PromptReco-v2/381594/merged___--config___../config_cards/full_DiJet.yaml -python3___../plotting/make_DiJet_plots.py___--dir___/eos/user/l/lebeling/www/DQM/JetMET/Run2024E/JetMET1/PromptReco-v1/381371/merged___--config___../config_cards/full_DiJet.yaml -python3___../plotting/make_DiJet_plots.py___--dir___/eos/user/l/lebeling/www/DQM/JetMET/Run2024E/week_22/merged___--config___../config_cards/full_DiJet.yaml -python3___../plotting/make_DiJet_plots.py___--dir___/eos/user/l/lebeling/www/DQM/JetMET/Run2024E/week_23/merged___--config___../config_cards/full_DiJet.yaml -python3___../plotting/make_DiJet_plots.py___--dir___/eos/user/l/lebeling/www/DQM/JetMET/Run2024F/merged___--config___../config_cards/full_DiJet.yaml 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-python3___../plotting/make_ZToMuMu_plots.py___--dir___/eos/user/l/lebeling/www/DQM/Muon/Run2024I/Muon1/PromptReco-v2/386924/merged___--config___../config_cards/full_ZToMuMu.yaml -python3___../plotting/make_ZToTauTau_plots.py___--dir___/eos/user/l/lebeling/www/DQM/Muon/Run2024I/Muon1/PromptReco-v2/386924/merged___--config___../config_cards/full_ZToTauTau.yaml -python3___../plotting/make_MuonJet_plots.py___--dir___/eos/user/l/lebeling/www/DQM/Muon/Run2024I/Muon1/PromptReco-v2/386924/merged___--config___../config_cards/full_MuonJet.yaml -python3___../plotting/make_ZToMuMu_plots.py___--dir___/eos/user/l/lebeling/www/DQM/Muon/Run2024I/Muon1/PromptReco-v2/386925/merged___--config___../config_cards/full_ZToMuMu.yaml -python3___../plotting/make_ZToTauTau_plots.py___--dir___/eos/user/l/lebeling/www/DQM/Muon/Run2024I/Muon1/PromptReco-v2/386925/merged___--config___../config_cards/full_ZToTauTau.yaml -python3___../plotting/make_MuonJet_plots.py___--dir___/eos/user/l/lebeling/www/DQM/Muon/Run2024I/Muon1/PromptReco-v2/386925/merged___--config___../config_cards/full_MuonJet.yaml -python3___../plotting/make_ZToMuMu_plots.py___--dir___/eos/user/l/lebeling/www/DQM/Muon/Run2024I/Muon1/PromptReco-v2/386945/merged___--config___../config_cards/full_ZToMuMu.yaml -python3___../plotting/make_ZToTauTau_plots.py___--dir___/eos/user/l/lebeling/www/DQM/Muon/Run2024I/Muon1/PromptReco-v2/386945/merged___--config___../config_cards/full_ZToTauTau.yaml -python3___../plotting/make_MuonJet_plots.py___--dir___/eos/user/l/lebeling/www/DQM/Muon/Run2024I/Muon1/PromptReco-v2/386945/merged___--config___../config_cards/full_MuonJet.yaml -python3___../plotting/make_ZToMuMu_plots.py___--dir___/eos/user/l/lebeling/www/DQM/Muon/Run2024I/Muon1/PromptReco-v2/386951/merged___--config___../config_cards/full_ZToMuMu.yaml -python3___../plotting/make_ZToTauTau_plots.py___--dir___/eos/user/l/lebeling/www/DQM/Muon/Run2024I/Muon1/PromptReco-v2/386951/merged___--config___../config_cards/full_ZToTauTau.yaml -python3___../plotting/make_MuonJet_plots.py___--dir___/eos/user/l/lebeling/www/DQM/Muon/Run2024I/Muon1/PromptReco-v2/386951/merged___--config___../config_cards/full_MuonJet.yaml -python3___../plotting/make_ZToMuMu_plots.py___--dir___/eos/user/l/lebeling/www/DQM/Muon/Run2024I/Muon1/PromptReco-v2/386974/merged___--config___../config_cards/full_ZToMuMu.yaml -python3___../plotting/make_ZToTauTau_plots.py___--dir___/eos/user/l/lebeling/www/DQM/Muon/Run2024I/Muon1/PromptReco-v2/386974/merged___--config___../config_cards/full_ZToTauTau.yaml -python3___../plotting/make_MuonJet_plots.py___--dir___/eos/user/l/lebeling/www/DQM/Muon/Run2024I/Muon1/PromptReco-v2/386974/merged___--config___../config_cards/full_MuonJet.yaml -python3___../plotting/make_ZToMuMu_plots.py___--dir___/eos/user/l/lebeling/www/DQM/Muon/Run2024I/week_40/merged___--config___../config_cards/full_ZToMuMu.yaml -python3___../plotting/make_ZToTauTau_plots.py___--dir___/eos/user/l/lebeling/www/DQM/Muon/Run2024I/week_40/merged___--config___../config_cards/full_ZToTauTau.yaml -python3___../plotting/make_MuonJet_plots.py___--dir___/eos/user/l/lebeling/www/DQM/Muon/Run2024I/week_40/merged___--config___../config_cards/full_MuonJet.yaml -python3___../plotting/make_ZToMuMu_plots.py___--dir___/eos/user/l/lebeling/www/DQM/Muon/Run2024I/week_41/merged___--config___../config_cards/full_ZToMuMu.yaml -python3___../plotting/make_ZToTauTau_plots.py___--dir___/eos/user/l/lebeling/www/DQM/Muon/Run2024I/week_41/merged___--config___../config_cards/full_ZToTauTau.yaml -python3___../plotting/make_MuonJet_plots.py___--dir___/eos/user/l/lebeling/www/DQM/Muon/Run2024I/week_41/merged___--config___../config_cards/full_MuonJet.yaml -python3___../plotting/make_ZToMuMu_plots.py___--dir___/eos/user/l/lebeling/www/DQM/Muon/Run2024I/week_42/merged___--config___../config_cards/full_ZToMuMu.yaml -python3___../plotting/make_ZToTauTau_plots.py___--dir___/eos/user/l/lebeling/www/DQM/Muon/Run2024I/week_42/merged___--config___../config_cards/full_ZToTauTau.yaml -python3___../plotting/make_MuonJet_plots.py___--dir___/eos/user/l/lebeling/www/DQM/Muon/Run2024I/week_42/merged___--config___../config_cards/full_MuonJet.yaml From 7531d9777560ca981370925b51f9fe05b68c4bd5 Mon Sep 17 00:00:00 2001 From: LukasEbeling Date: Wed, 4 Dec 2024 12:42:38 +0100 Subject: [PATCH 35/76] paths changed --- .gitignore | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/.gitignore b/.gitignore index 9f7a963..a620c38 100644 --- a/.gitignore +++ b/.gitignore @@ -1,3 +1,3 @@ **/__pycache__/** -**/logs/** -/htcondor/queue.txt \ No newline at end of file +/automation/logs/** +/automation/queue.txt \ No newline at end of file From 746df4f5cca025bd16233db1b5c05efc974e42b7 Mon Sep 17 00:00:00 2001 From: LukasEbeling Date: Wed, 4 Dec 2024 12:42:55 +0100 Subject: [PATCH 36/76] clean up --- automation/submit.txt | 7 ------- 1 file changed, 7 deletions(-) diff --git a/automation/submit.txt b/automation/submit.txt index ce82895..4d6f579 100644 --- a/automation/submit.txt +++ b/automation/submit.txt @@ -8,13 +8,6 @@ log = logs/$(ClusterId).$(ProcId).log should_transfer_files = yes when_to_transfer_output = on_exit -#output_destination = root://eosuser.cern.ch/$(path) -#should_transfer_files = YES -#MY.XRDCP_CREATE_DIR = True - transfer_input_files = /afs/cern.ch/user/l/lebeling/MacrosNtuples.tar.gz -#+PostCmd = "MacrosNtuples/htcondor/copy.sh" - -#transfer_output_files = $(out) queue cmd from queue.txt \ No newline at end of file From 828ced867b1e0bda3584b4b6d84aa6d6a0f2d15e Mon Sep 17 00:00:00 2001 From: LukasEbeling Date: Wed, 4 Dec 2024 12:43:26 +0100 Subject: [PATCH 37/76] clean up, tar file not needed --- automation/wrapper.py | 6 ++---- 1 file changed, 2 insertions(+), 4 deletions(-) diff --git a/automation/wrapper.py b/automation/wrapper.py index 72de63f..1972e72 100755 --- a/automation/wrapper.py +++ b/automation/wrapper.py @@ -12,9 +12,7 @@ concatenated_cmd = ' '.join(args.cmd) concatenated_cmd = concatenated_cmd.replace("___", " ") -concatenated_cmd = 'tar -xzf MacrosNtuples.tar.gz; cd MacrosNtuples/l1macros; ' + concatenated_cmd +#concatenated_cmd = 'tar -xzf MacrosNtuples.tar.gz; cd MacrosNtuples/l1macros; ' + concatenated_cmd +concatenated_cmd = f'cd /afs/cern.ch/user/l/lebeling/MacrosNtuples/automation; ' + concatenated_cmd -print(concatenated_cmd) os.system(concatenated_cmd) -#os.system("pwd") -#os.system("ls -a") \ No newline at end of file From c9215e45418ee492f8da53ba0139681e6d47c623 Mon Sep 17 00:00:00 2001 From: LukasEbeling Date: Wed, 4 Dec 2024 12:48:37 +0100 Subject: [PATCH 38/76] comment changed --- automation/make_hists.py | 10 +++++----- 1 file changed, 5 insertions(+), 5 deletions(-) diff --git a/automation/make_hists.py b/automation/make_hists.py index e6e511b..4efffc2 100644 --- a/automation/make_hists.py +++ b/automation/make_hists.py @@ -31,11 +31,11 @@ out_web_path = dqm_prefix + parse_file(fname) - if os.path.exists(out_web_path): - root_files = glob(f"{out_web_path}/*.root") - if len(root_files) > 0: - print(f"Skipping {out_web_path} - already processed") - continue + # abort if histogram root files already exist + root_files = glob(f"{out_web_path}/*.root") + if len(root_files) > 0: + print(f"Skipping {out_web_path} - already processed") + continue for cmd in config["scripts"]: cmd = cmd.replace("$OUTDIR", out_web_path) From 9c2932ddb9dec0668177f52e3f391a797864c05e Mon Sep 17 00:00:00 2001 From: LukasEbeling Date: Wed, 4 Dec 2024 13:17:50 +0100 Subject: [PATCH 39/76] htcondor flag now as function in utils --- automation/make_hists.py | 12 +++--------- 1 file changed, 3 insertions(+), 9 deletions(-) diff --git a/automation/make_hists.py b/automation/make_hists.py index 4efffc2..670e192 100644 --- a/automation/make_hists.py +++ b/automation/make_hists.py @@ -1,18 +1,12 @@ #!/bin/python3 -import os, sys, subprocess, yaml, argparse +import os, yaml from glob import glob -from utils import write_queue, parse_file, run_command, tier0, dqm_prefix +from utils import write_queue, parse_file, run_command, htcondor_flag, tier0, dqm_prefix config_dict = yaml.safe_load(open('config.yaml', 'r')) -# parse arguments -parser = argparse.ArgumentParser(description="Run plots for datasets") -parser.add_argument('--htcondor', action='store_true', help='run on htcondor') -args = parser.parse_args() -htcondor = args.htcondor - -if htcondor: os.system('rm -rf queue.txt') +htcondor = htcondor_flag() # main logic: glob files on tier 0 and run plotting scripts for label, config in config_dict.items(): From 4e13251427e814d0d43c16d082b23419efb0c21f Mon Sep 17 00:00:00 2001 From: LukasEbeling Date: Wed, 4 Dec 2024 15:15:12 +0100 Subject: [PATCH 40/76] clean up, htcondor flag put to utils --- automation/merge_per_run.py | 28 ++++++++-------------------- 1 file changed, 8 insertions(+), 20 deletions(-) diff --git a/automation/merge_per_run.py b/automation/merge_per_run.py index 6008c25..7208276 100644 --- a/automation/merge_per_run.py +++ b/automation/merge_per_run.py @@ -1,27 +1,16 @@ #!/bin/python3 -import os, argparse from glob import glob -from utils import hadd - - -dqm_prefix = "/eos/cms/store/group/dpg_trigger/comm_trigger/L1Trigger/cmsl1dpg/www/DQM/T0PromptNanoMonit" -#dqm_prefix = "/eos/user/l/lebeling/www/DQM" -out_prefix = "/eos/user/l/lebeling/www/DQM" +from utils import hadd, htcondor_flag, dqm_prefix # parse arguments -parser = argparse.ArgumentParser(description="merge per run") -parser.add_argument('--local', action='store_true', help='run locally (not on condor)') -args = parser.parse_args() -local = args.local - -if not local: os.system('rm -rf ../htcondor/queue.txt') +htcondor = htcondor_flag() +# work around for the moment, remove later +dqm_official = '/eos/cms/store/group/dpg_trigger/comm_trigger/L1Trigger/cmsl1dpg/www/DQM/T0PromptNanoMonit' -# collect all histogram root files -all_files = glob(f"{dqm_prefix}/*/*/*/*/*/*/*.root") -print('found files:', len(all_files)) - +# collect all base histogram root files +all_files = glob(f"{dqm_official}/*/*/*/*/*/*/*.root") # group files by runnum, by era, and by year file_groups = {} @@ -31,12 +20,11 @@ filehash = parts[-2] # group by runnum - target = file.replace(filehash, "merged").replace(dqm_prefix, out_prefix) + target = file.replace(filehash, "merged").replace(dqm_official, dqm_prefix) if target not in file_groups: file_groups[target] = [] file_groups[target].append(file) - # Hadd grouped files for target, files in file_groups.items(): - hadd(target, files, local) + hadd(target, files, htcondor) From ecc2ae21c7521b1333c7d25f55527d8daaf5c41b Mon Sep 17 00:00:00 2001 From: LukasEbeling Date: Thu, 5 Dec 2024 14:15:20 +0100 Subject: [PATCH 41/76] init (so far only dump) --- automation/README.md | 37 +++++++++++++++++++++++++++++++++++++ 1 file changed, 37 insertions(+) create mode 100644 automation/README.md diff --git a/automation/README.md b/automation/README.md new file mode 100644 index 0000000..986f989 --- /dev/null +++ b/automation/README.md @@ -0,0 +1,37 @@ +# Automation Tool Kit +Overview +Steps: make hists, merge per run, merge per era (and week), make plots +Use ```--htcondor``` to write execution commands into queue file and submit +Make sure the following paths are correct: +- DQM webpage were plots are deployed -> ```dqm_prefix``` in ```utils.py``` +- path to tier 0 -> ```tier0``` in ```utils.py``` +- path to local installation of automation tool kit -> ```automation_path``` in ```wrapper.py``` + +### Dump +`*/10 * * * * lxplus python3 /eos/home-l/lebeling/projects/MacrosNtuples/l1macros/cron_job_runner_root.py` + +dqm official -> +``` +/eos/cms/store/group/dpg_trigger/comm_trigger/L1Trigger/cmsl1dpg/www/DQM/T0PromptNanoMonit +``` + +### Bugs +``` +python3 ../plotting/make_DiJet_plots.py --dir /eos/user/l/lebeling/www/DQM/Weekly/Week40_386367-386617/JetMET/Run2024H/merged --config ../config_cards/full_DiJet.yaml + +Traceback (most recent call last): + File "/afs/cern.ch/user/l/lebeling/MacrosNtuples/automation/../plotting/make_DiJet_plots.py", line 678, in + main() + File "/afs/cern.ch/user/l/lebeling/MacrosNtuples/automation/../plotting/make_DiJet_plots.py", line 31, in main + drawplots.makedist( + File "/afs/cern.ch/user/l/lebeling/MacrosNtuples/plotting/drawplots.py", line 134, in makedist + h1ds.append(inputFile.Get(h1d[i]+nvtx_suffix).Clone()) +ReferenceError: attempt to access a null-pointer +``` + +``` +/eos/cms/store/group/dpg_trigger/comm_trigger/L1Trigger/cmsl1dpg/www/DQM/T0PromptNanoMonit/EGamma/Run2024G/EGamma0/PromptReco-v1/385532/3095b2ea-82b1-41e0-b4bd-f146685a313b +``` + +### Major Patch Notes +Previously, plotting scripts were submitted to htcondor as ```MacrosNtuples.tar.gz```. No longer needed, as htcondor has access to afs directory. \ No newline at end of file From a600ad4ba7f93a87d1baa5c305dd4ea54bc56c43 Mon Sep 17 00:00:00 2001 From: LukasEbeling Date: Thu, 5 Dec 2024 14:15:48 +0100 Subject: [PATCH 42/76] abort condition based on file time --- automation/make_plots.py | 46 ++++++++++++++-------------------------- 1 file changed, 16 insertions(+), 30 deletions(-) diff --git a/automation/make_plots.py b/automation/make_plots.py index 9c62a6a..fd2237c 100644 --- a/automation/make_plots.py +++ b/automation/make_plots.py @@ -2,22 +2,12 @@ import os, argparse, yaml from glob import glob -from utils import run_command, write_queue +from utils import run_command, write_queue, htcondor_flag, dqm_prefix - -dqm_prefix = "/eos/user/l/lebeling/www/DQM/" # "/eos/cms/store/group/dpg_trigger/comm_trigger/L1Trigger/cmsl1dpg/www/DQM/T0PromptNanoMonit/" -script_dir = os.getcwd() +# load config config_dict = yaml.safe_load(open('config.yaml', 'r')) - -# parse arguments -parser = argparse.ArgumentParser(description="plotting") -parser.add_argument('--local', action='store_true', help='run locally (not on condor)') -args = parser.parse_args() -local = args.local - -if not local: os.system('rm -rf ../htcondor/queue.txt') - +htcondor = htcondor_flag() # main logic: glob files merged root files and make plots for label, config in config_dict.items(): @@ -25,25 +15,21 @@ merged_dirs = glob(pattern, recursive=True) for merged_dir in merged_dirs: + + # abort plotting if all .png files are newer than all .root files + t_newest, t_oldest = 0, 0 + root_files = glob(f"{merged_dir}/*.root") + png_files = glob(f"{merged_dir}/plotsL1Run3/*.png") + if len(root_files) > 0: t_newest = max(os.path.getctime(f) for f in root_files) + if len(png_files) > 0: t_oldest = min(os.path.getctime(f) for f in png_files) + if t_oldest > t_newest: + print('skipping: ' + merged_dir) + continue + for cmd in config["plotting"]: print(80*"#"+'\n'+f"plotting for {merged_dir}") os.makedirs(merged_dir + '/plotsL1Run3', exist_ok=True) - - # if directory is non empty get time of newst file - if os.listdir(merged_dir): - newest = max(glob(merged_dir + '/*.root'), key=os.path.getctime) - time_root = os.path.getctime(newest) - else: time_root = 0 - - # if /plotsL1Run3 is non empty get time of newst png file - if os.listdir(merged_dir + '/plotsL1Run3'): - newest = max(glob(merged_dir + '/plotsL1Run3/*.png'), key=os.path.getctime) - time_png = os.path.getctime(newest) - else: time_png = 0 - - if time_png > time_root: continue - cmd = cmd.replace("$OUTDIR", merged_dir) print(cmd) - if local: run_command(cmd) - else: write_queue(cmd) + if htcondor: write_queue(cmd) + else: run_command(cmd, merged_dir + '/log.txt') From 32a826ae493f6569b2d49efc4d9ce569cc6dbac9 Mon Sep 17 00:00:00 2001 From: LukasEbeling Date: Thu, 5 Dec 2024 14:16:10 +0100 Subject: [PATCH 43/76] clean up, htcondor flag imported from utils --- automation/merge_per_era.py | 29 ++++++++--------------------- 1 file changed, 8 insertions(+), 21 deletions(-) diff --git a/automation/merge_per_era.py b/automation/merge_per_era.py index 8aa0550..364e9a6 100644 --- a/automation/merge_per_era.py +++ b/automation/merge_per_era.py @@ -1,25 +1,12 @@ #!/bin/python3 -import os, argparse from glob import glob -from utils import hadd, get_weeks +from utils import hadd, get_weeks, htcondor_flag, dqm_prefix +htcondor = htcondor_flag() -#dqm_prefix = "/eos/cms/store/group/dpg_trigger/comm_trigger/L1Trigger/cmsl1dpg/www/DQM/T0PromptNanoMonit" -dqm_prefix = "/eos/user/l/lebeling/www/DQM" -out_prefix = "/eos/user/l/lebeling/www/DQM" - - -# parse arguments -parser = argparse.ArgumentParser(description="merge per era") -parser.add_argument('--local', action='store_true', help='run locally (not on condor)') -args = parser.parse_args() -local = args.local - -if not local: os.system('rm -rf ../htcondor/queue.txt') - -# collect all histogram root files -all_files = glob(f"{dqm_prefix}/*/*/*/*/*/merged/*.root") +# collect all histogram root files merged by run +all_files = glob(f"{dqm_prefix}/*/*/*/*/*/merged/*.root") #change later to dqm_prefix print('found files:', len(all_files)) weeks = get_weeks() @@ -36,19 +23,19 @@ # group by week - not all run in list? if run in weeks.keys(): week = weeks[run] - target = f"{out_prefix}/{label}/{era}/week_{week}/merged/{filename}" + target = f"{dqm_prefix}/Weekly/{week}/{label}/merged/{filename}" if target not in file_groups: file_groups[target] = [] file_groups[target].append(file) # group by era - target = f"{out_prefix}/{label}/{era}/merged/{filename}" + target = f"{dqm_prefix}/{label}/{era}/merged/{filename}" if target not in file_groups: file_groups[target] = [] file_groups[target].append(file) # group by year - target = f"{out_prefix}/{label}/merged/{filename}" + target = f"{dqm_prefix}/{label}/merged/{filename}" if target not in file_groups: file_groups[target] = [] file_groups[target].append(file) @@ -56,4 +43,4 @@ # Hadd grouped files for target, files in file_groups.items(): - hadd(target, files, local) + hadd(target, files, htcondor) From a3315772945c08b74dcafac55ef62ba0ea1f0c8c Mon Sep 17 00:00:00 2001 From: LukasEbeling Date: Thu, 5 Dec 2024 14:16:46 +0100 Subject: [PATCH 44/76] executed cmd printed to output file --- automation/wrapper.py | 9 +++++---- 1 file changed, 5 insertions(+), 4 deletions(-) diff --git a/automation/wrapper.py b/automation/wrapper.py index 1972e72..7d58127 100755 --- a/automation/wrapper.py +++ b/automation/wrapper.py @@ -3,16 +3,17 @@ import argparse import os -# parse arguments -parser = argparse.ArgumentParser(description="wrapper running script on htcondor") +automation_path = '/afs/cern.ch/user/l/lebeling/MacrosNtuples/automation' -# Add an argument that accepts multiple values +# parse commands to be executed as arguments +parser = argparse.ArgumentParser(description="wrapper running script on htcondor") parser.add_argument('cmd', nargs='+', type=str, help='commands to be executed') args = parser.parse_args() concatenated_cmd = ' '.join(args.cmd) concatenated_cmd = concatenated_cmd.replace("___", " ") #concatenated_cmd = 'tar -xzf MacrosNtuples.tar.gz; cd MacrosNtuples/l1macros; ' + concatenated_cmd -concatenated_cmd = f'cd /afs/cern.ch/user/l/lebeling/MacrosNtuples/automation; ' + concatenated_cmd +concatenated_cmd = f'cd {automation_path}; ' + concatenated_cmd +print('command to be executed: ' + concatenated_cmd) os.system(concatenated_cmd) From a848e40319f5d6467c1160e0ac0400142d917228 Mon Sep 17 00:00:00 2001 From: LukasEbeling Date: Thu, 5 Dec 2024 14:17:22 +0100 Subject: [PATCH 45/76] new abort condition for hadd --- automation/utils.py | 54 +++++++++++++++++++++++++++++++-------------- 1 file changed, 37 insertions(+), 17 deletions(-) diff --git a/automation/utils.py b/automation/utils.py index 1508ba0..bb42280 100644 --- a/automation/utils.py +++ b/automation/utils.py @@ -1,14 +1,12 @@ -import os, subprocess, uproot +import os, subprocess, uproot, argparse import pandas as pd -script_dir = os.path.join(os.getcwd(), "../l1macros") +#dqm_prefix = '/eos/cms/store/group/dpg_trigger/comm_trigger/L1Trigger/cmsl1dpg/www/DQM/T0PromptNanoMonit' dqm_prefix = "/eos/user/l/lebeling/www/DQM" -out_prefix = "/eos/user/l/lebeling/www/DQM" tier0 = "/eos/cms/tier0/store/data" def run_command(cmd, log_file = "log.txt"): - os.chdir(script_dir) with open(log_file, "a") as f: subprocess.run(cmd, shell=True, stdout=f, stderr=f) @@ -24,7 +22,7 @@ def parse_file(fname): label = ''.join([char for char in dataset if not char.isdigit()]) #return f"{year}/{label}/{era}/{run}/{base_fname}" - return f"{label}/{era}/{dataset}/{reco_version}/{run}/{base_fname}" + return f"/{label}/{era}/{dataset}/{reco_version}/{run}/{base_fname}" def write_queue(script, infile = "", outdir = ""): @@ -34,6 +32,7 @@ def write_queue(script, infile = "", outdir = ""): f.write(cmd + "\n") +# return weeks as dict with runnum as key -> weeks[runx] = 42 def get_weeks(): oms_path = "/eos/cms/store/group/tsg/STEAM/OMSRateNtuple/2024/physics.root" with uproot.open(oms_path) as f: @@ -43,12 +42,19 @@ def get_weeks(): ) df['date'] = pd.to_datetime(df[['year', 'month', 'day']]) df['week'] = df['date'].dt.isocalendar().week + + min_run = df.groupby('week')['run'].min() + max_run = df.groupby('week')['run'].max() - result_dict = {} + weeks = {} for _, row in df.iterrows(): - result_dict[row['run']] = row['week'] + w = row['week'] + r = row['run'] + min_r = min_run[w] + max_r = max_run[w] + weeks[r] = f'Week{w}_{min_r}-{max_r}' - return result_dict + return weeks def load_filelist(path): @@ -64,18 +70,32 @@ def save_filelist(path, files): f.write(file + "\n") -def hadd(target, files, local): +def hadd(target, files, htcondor = False): os.makedirs(os.path.dirname(target), exist_ok=True) - filelist = load_filelist(target.replace('root','txt')) - - if set(filelist) == set(files): - print('skipping ' + target, "already hadded") - return + # filelist = load_filelist(target.replace('root','txt')) + # if set(filelist) == set(files): + # print('skipping ' + target, "already hadded") + # return + # save_filelist(target.replace('root','txt'), files) - save_filelist(target.replace('root','txt'), files) + # abort if merged file already exists, and it is newer than all base files + if os.path.exists(target): + target_time = os.path.getctime(target) + files_time = max([os.path.getctime(file) for file in files]) + if target_time > files_time: + print(f"skipping {target} - newer than all base files") + return print(f"Hadding files with target {target}") cmd = f'hadd -f {target} ' + ' '.join(files) - if local: run_command(cmd, os.path.dirname(target)+"/log.txt") - else: write_queue(cmd) + if htcondor: write_queue(cmd) + else: run_command(cmd, os.path.dirname(target)+"/log.txt") + + +def htcondor_flag(): + parser = argparse.ArgumentParser() + parser.add_argument('--htcondor', action='store_true', help='run on ht condor') + args = parser.parse_args() + if args.htcondor: os.system('rm -rf queue.txt') + return args.htcondor From 7651944d7127088c44bd13883c2dac209f44b920 Mon Sep 17 00:00:00 2001 From: LukasEbeling Date: Mon, 9 Dec 2024 13:03:55 +0100 Subject: [PATCH 46/76] init --- automation/merge_total.py | 29 +++++++++++++++++++++++++++++ 1 file changed, 29 insertions(+) create mode 100644 automation/merge_total.py diff --git a/automation/merge_total.py b/automation/merge_total.py new file mode 100644 index 0000000..908ad1a --- /dev/null +++ b/automation/merge_total.py @@ -0,0 +1,29 @@ +#!/bin/python3 + +from glob import glob +from utils import hadd, clean, get_weeks, htcondor_flag, dqm_prefix + +htcondor = htcondor_flag() + +# collect all histogram root files merged by run +all_files = glob(f'{dqm_prefix}/*/*/merged/*.root') #change later to dqm_prefix +cleaned_files = clean(all_files) + +# group by type (i.e. Muon, EGamma, JetMet, etc.) +file_groups = {} +for file in cleaned_files: + parts = file.split('/') + filename = parts[-1] + era = parts[-3] + label = parts[-4] + + target = f"{dqm_prefix}/{label}/merged/{filename}" + if target not in file_groups: + file_groups[target] = [] + file_groups[target].append(file) + + +# Hadd grouped files +for target, files in file_groups.items(): + hadd(target, files, htcondor) + #print(target, files) From 29889579feb5ca52f697755ee1259cc59f6a4280 Mon Sep 17 00:00:00 2001 From: LukasEbeling Date: Mon, 9 Dec 2024 13:04:14 +0100 Subject: [PATCH 47/76] not needed --- automation/condor_init.sh | 5 ----- 1 file changed, 5 deletions(-) delete mode 100644 automation/condor_init.sh diff --git a/automation/condor_init.sh b/automation/condor_init.sh deleted file mode 100644 index f5941ec..0000000 --- a/automation/condor_init.sh +++ /dev/null @@ -1,5 +0,0 @@ -#!/bin/bash - -cd ../.. -tar -czvf "MacrosNtuples.tar.gz" "MacrosNtuples" -cd MacrosNtuples/automation From 948c6991260cb6bcb296b94d8073ab62f333e144 Mon Sep 17 00:00:00 2001 From: LukasEbeling Date: Mon, 9 Dec 2024 13:04:32 +0100 Subject: [PATCH 48/76] duplicate line removed --- automation/config.yaml | 1 - 1 file changed, 1 deletion(-) diff --git a/automation/config.yaml b/automation/config.yaml index d08e549..3b870c4 100644 --- a/automation/config.yaml +++ b/automation/config.yaml @@ -36,7 +36,6 @@ Muon: - 'python3 ../l1macros/performances_nano_dqmoff.py -i $INFILE -o $OUTDIR/out_zmumu_dqmoffl.root -c ZToMuMuDQMOff' - 'python3 ../l1macros/performances_nano_dqmoff.py -i $INFILE -o $OUTDIR/out_jets_dqmoff.root -c JetsDQMOff' - 'python3 ../l1macros/performances_nano_dqmoff.py -i $INFILE -o $OUTDIR/out_ztautau_dqmoff.root -c ZToTauTauDQMOff' - - 'python3 ../l1macros/performances_nano_dqmoff.py -i $INFILE -o $OUTDIR/out_zmumu_dqmoffl.root -c ZToMuMuDQMOff' - 'python3 ../l1macros/performances_nano_dqmoff.py -i $INFILE -o $OUTDIR/out_etsum_dqmoff.root -c EtSumDQMOff' plotting: - 'python3 ../plotting/make_ZToMuMu_plots.py --dir $OUTDIR --config ../config_cards/full_ZToMuMu.yaml' From e95b6042dc70f6a5fea21389101df57badd748dc Mon Sep 17 00:00:00 2001 From: LukasEbeling Date: Mon, 9 Dec 2024 13:04:47 +0100 Subject: [PATCH 49/76] init: file to run all --- automation/cron_job.sh | 6 ++++++ 1 file changed, 6 insertions(+) create mode 100644 automation/cron_job.sh diff --git a/automation/cron_job.sh b/automation/cron_job.sh new file mode 100644 index 0000000..905c8fa --- /dev/null +++ b/automation/cron_job.sh @@ -0,0 +1,6 @@ +#!/bin/bash +python3 make_hists.py +python3 merge_per_run.py +python3 merge_per_era.py +python3 merge_total.py +python3 make_plots.py \ No newline at end of file From aae652a34aea4beafa99ad62b83023298480dcc5 Mon Sep 17 00:00:00 2001 From: LukasEbeling Date: Mon, 9 Dec 2024 13:05:09 +0100 Subject: [PATCH 50/76] merge all eras moved to different script --- automation/merge_per_era.py | 8 +------- 1 file changed, 1 insertion(+), 7 deletions(-) diff --git a/automation/merge_per_era.py b/automation/merge_per_era.py index 364e9a6..557f238 100644 --- a/automation/merge_per_era.py +++ b/automation/merge_per_era.py @@ -11,7 +11,7 @@ weeks = get_weeks() -# group files by week, by era, and by year +# group files by week and era file_groups = {} for file in all_files: parts = file.split('/') @@ -34,12 +34,6 @@ file_groups[target] = [] file_groups[target].append(file) - # group by year - target = f"{dqm_prefix}/{label}/merged/{filename}" - if target not in file_groups: - file_groups[target] = [] - file_groups[target].append(file) - # Hadd grouped files for target, files in file_groups.items(): From ef76c39911288548f3c1bab0bd20138a60472faf Mon Sep 17 00:00:00 2001 From: LukasEbeling Date: Mon, 9 Dec 2024 13:05:26 +0100 Subject: [PATCH 51/76] file cleaning added based on file timing --- automation/merge_per_run.py | 5 +++-- 1 file changed, 3 insertions(+), 2 deletions(-) diff --git a/automation/merge_per_run.py b/automation/merge_per_run.py index 7208276..375a07b 100644 --- a/automation/merge_per_run.py +++ b/automation/merge_per_run.py @@ -1,7 +1,7 @@ #!/bin/python3 from glob import glob -from utils import hadd, htcondor_flag, dqm_prefix +from utils import hadd, clean, htcondor_flag, dqm_prefix # parse arguments htcondor = htcondor_flag() @@ -11,10 +11,11 @@ # collect all base histogram root files all_files = glob(f"{dqm_official}/*/*/*/*/*/*/*.root") +cleaned_files = clean(all_files) # group files by runnum, by era, and by year file_groups = {} -for file in all_files: +for file in cleaned_files: parts = file.split('/') filename = parts[-1] filehash = parts[-2] From 5d5181d5b49bbe4d8994c3a25b645c5dbdc55ca2 Mon Sep 17 00:00:00 2001 From: LukasEbeling Date: Mon, 9 Dec 2024 13:07:20 +0100 Subject: [PATCH 52/76] hadd -> abort condition now based on file timing --- automation/utils.py | 23 ++++------------------- 1 file changed, 4 insertions(+), 19 deletions(-) diff --git a/automation/utils.py b/automation/utils.py index bb42280..4be9e6a 100644 --- a/automation/utils.py +++ b/automation/utils.py @@ -57,28 +57,9 @@ def get_weeks(): return weeks -def load_filelist(path): - try: - with open(path, "r") as f: - return [line.strip() for line in f.readlines()] - except FileNotFoundError: return [] - - -def save_filelist(path, files): - with open(path, "w") as f: - for file in files: - f.write(file + "\n") - - def hadd(target, files, htcondor = False): os.makedirs(os.path.dirname(target), exist_ok=True) - # filelist = load_filelist(target.replace('root','txt')) - # if set(filelist) == set(files): - # print('skipping ' + target, "already hadded") - # return - # save_filelist(target.replace('root','txt'), files) - # abort if merged file already exists, and it is newer than all base files if os.path.exists(target): target_time = os.path.getctime(target) @@ -99,3 +80,7 @@ def htcondor_flag(): args = parser.parse_args() if args.htcondor: os.system('rm -rf queue.txt') return args.htcondor + + +def clean(files): + return [file for file in files if os.path.getsize(file) >= 1600] From a76aefb7884a28bc15e30827636665169681bd90 Mon Sep 17 00:00:00 2001 From: LukasEbeling Date: Mon, 9 Dec 2024 14:11:29 +0100 Subject: [PATCH 53/76] user friendly documentation --- automation/README.md | 81 +++++++++++++++++++++++++------------------- 1 file changed, 46 insertions(+), 35 deletions(-) diff --git a/automation/README.md b/automation/README.md index 986f989..98c66b8 100644 --- a/automation/README.md +++ b/automation/README.md @@ -1,37 +1,48 @@ # Automation Tool Kit -Overview -Steps: make hists, merge per run, merge per era (and week), make plots -Use ```--htcondor``` to write execution commands into queue file and submit -Make sure the following paths are correct: -- DQM webpage were plots are deployed -> ```dqm_prefix``` in ```utils.py``` -- path to tier 0 -> ```tier0``` in ```utils.py``` -- path to local installation of automation tool kit -> ```automation_path``` in ```wrapper.py``` - -### Dump -`*/10 * * * * lxplus python3 /eos/home-l/lebeling/projects/MacrosNtuples/l1macros/cron_job_runner_root.py` - -dqm official -> -``` -/eos/cms/store/group/dpg_trigger/comm_trigger/L1Trigger/cmsl1dpg/www/DQM/T0PromptNanoMonit -``` - -### Bugs -``` -python3 ../plotting/make_DiJet_plots.py --dir /eos/user/l/lebeling/www/DQM/Weekly/Week40_386367-386617/JetMET/Run2024H/merged --config ../config_cards/full_DiJet.yaml - -Traceback (most recent call last): - File "/afs/cern.ch/user/l/lebeling/MacrosNtuples/automation/../plotting/make_DiJet_plots.py", line 678, in - main() - File "/afs/cern.ch/user/l/lebeling/MacrosNtuples/automation/../plotting/make_DiJet_plots.py", line 31, in main - drawplots.makedist( - File "/afs/cern.ch/user/l/lebeling/MacrosNtuples/plotting/drawplots.py", line 134, in makedist - h1ds.append(inputFile.Get(h1d[i]+nvtx_suffix).Clone()) -ReferenceError: attempt to access a null-pointer -``` - -``` -/eos/cms/store/group/dpg_trigger/comm_trigger/L1Trigger/cmsl1dpg/www/DQM/T0PromptNanoMonit/EGamma/Run2024G/EGamma0/PromptReco-v1/385532/3095b2ea-82b1-41e0-b4bd-f146685a313b -``` - -### Major Patch Notes +Tool kit to (semi) automize production of DQM plot from NanoAODs stored on tier 0. +Two modes of operation are offered: +- via cron job: recommended for daily processing of new files +- via htcondor: recommended for rerunning all files currently on tier 0 + +Further details are provided below. The different processing steps are summarized as: + +1) Histograms +Run `python3 make_hists.py` to produce `.root` files containing histograms for all data types (i.e. EGamma, Muon, JetMet). Which selections are run is specified in `config.yaml` (see scritps). If the respective output file already exists, the histogram production is skipped. + +2) Merge per Run +Run `python3 merge_per_run.py` to merge (i.e. hadd) the histogram files per run. If the respective output file already exists and is newer than all base histogram files, the merging is skipped. + +3) Merge per era/week +Run `python3 merge_per_era.py` to further merge (i.e. hadd) the histograms per era (i.e. Run2024H) and per week using the merged histograms per run. If the respective output file already exists and is newer than all base histogram files, the merging is skipped. + +4) Merge per type +Run `python3 merge_total.py` to merge (i.e. hadd) all histograms of one data type (i.e. EGamma, Muon, JetMet) using the merged histograms per era. If the respective output file already exists and is newer than all base histogram files, the merging is skipped. + +5) Plotting +Run `make_plots.py` to produce png/pdf plots from all merged histograms (merge per run/era/week/total). The plotting repective scripts are specified `condfig.yaml`. If the png/pdf files already exist and are newer than the histogram files, the plotting is skipped. + + +## Init +Clone the repository into afs directory on lxplus: +`git clone git@github.com:LukasEbeling/MacrosNtuples.git` + +Adjust output path (i.e. directory in which all plots and histogram are deployed): +automation -> `utils.py` -> `dqm_prefix` + +Asdjust repository path in `wrapper.py` to user installation of `MacrosNtuples` + +## Setup for cron +To periodically process new files on tier 0, the following cron job is recommended: +```*/10 * * * * lxplus . cron_job.sh``` + +Further usefull commands: +Show cron job list via `acrontab -l` +Edit cron job list via `acrontab -e` +Exit cron job list via `ctrl+O`/`ctrl+X` +Delete full cron job list via `acrontab -r` + +## Setup for htcondor +All prduction steps listed above can be run on htcondor. Using the flag `--htcondor`, the repective commands are not directly executed but instead written into the `queue.txt` file. With `condor_submit submit.txt`, all commands in the queue are submitted to htcondor. This mode is recommended to (re-)run all files currently stored on tier 0. + +## Major Patch Notes Previously, plotting scripts were submitted to htcondor as ```MacrosNtuples.tar.gz```. No longer needed, as htcondor has access to afs directory. \ No newline at end of file From c272950ba69fbcd6065a225e5be1f160169f79d4 Mon Sep 17 00:00:00 2001 From: LukasEbeling Date: Mon, 9 Dec 2024 14:11:41 +0100 Subject: [PATCH 54/76] import clean up --- automation/utils.py | 3 +-- 1 file changed, 1 insertion(+), 2 deletions(-) diff --git a/automation/utils.py b/automation/utils.py index 4be9e6a..bba6ad6 100644 --- a/automation/utils.py +++ b/automation/utils.py @@ -1,5 +1,4 @@ -import os, subprocess, uproot, argparse -import pandas as pd +import os, subprocess, argparse #dqm_prefix = '/eos/cms/store/group/dpg_trigger/comm_trigger/L1Trigger/cmsl1dpg/www/DQM/T0PromptNanoMonit' dqm_prefix = "/eos/user/l/lebeling/www/DQM" From d47df7f28afe2e43b35da7acf7466363a4cd726e Mon Sep 17 00:00:00 2001 From: LukasEbeling Date: Mon, 9 Dec 2024 14:11:53 +0100 Subject: [PATCH 55/76] clearer naming convention --- automation/wrapper.py | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/automation/wrapper.py b/automation/wrapper.py index 7d58127..8b41371 100755 --- a/automation/wrapper.py +++ b/automation/wrapper.py @@ -3,7 +3,7 @@ import argparse import os -automation_path = '/afs/cern.ch/user/l/lebeling/MacrosNtuples/automation' +repository = '/afs/cern.ch/user/l/lebeling/MacrosNtuples' # parse commands to be executed as arguments parser = argparse.ArgumentParser(description="wrapper running script on htcondor") @@ -13,7 +13,7 @@ concatenated_cmd = ' '.join(args.cmd) concatenated_cmd = concatenated_cmd.replace("___", " ") #concatenated_cmd = 'tar -xzf MacrosNtuples.tar.gz; cd MacrosNtuples/l1macros; ' + concatenated_cmd -concatenated_cmd = f'cd {automation_path}; ' + concatenated_cmd +concatenated_cmd = f'cd {repository}/automation; ' + concatenated_cmd print('command to be executed: ' + concatenated_cmd) os.system(concatenated_cmd) From 972a44116180bddc6374df8bc0a15e49c309eddd Mon Sep 17 00:00:00 2001 From: LukasEbeling Date: Mon, 16 Dec 2024 14:32:07 +0100 Subject: [PATCH 56/76] clean up --- automation/merge_per_era.py | 1 - 1 file changed, 1 deletion(-) diff --git a/automation/merge_per_era.py b/automation/merge_per_era.py index 557f238..87acafa 100644 --- a/automation/merge_per_era.py +++ b/automation/merge_per_era.py @@ -7,7 +7,6 @@ # collect all histogram root files merged by run all_files = glob(f"{dqm_prefix}/*/*/*/*/*/merged/*.root") #change later to dqm_prefix -print('found files:', len(all_files)) weeks = get_weeks() From 03dcb170c209ce0476bc8e623f0ba72443707e6e Mon Sep 17 00:00:00 2001 From: LukasEbeling Date: Mon, 16 Dec 2024 14:32:16 +0100 Subject: [PATCH 57/76] import added --- automation/utils.py | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/automation/utils.py b/automation/utils.py index bba6ad6..339f919 100644 --- a/automation/utils.py +++ b/automation/utils.py @@ -1,4 +1,5 @@ -import os, subprocess, argparse +import os, subprocess, argparse, uproot +import pandas as pd #dqm_prefix = '/eos/cms/store/group/dpg_trigger/comm_trigger/L1Trigger/cmsl1dpg/www/DQM/T0PromptNanoMonit' dqm_prefix = "/eos/user/l/lebeling/www/DQM" From 275fa53c04b25eefff47379e1d22a58c206db532 Mon Sep 17 00:00:00 2001 From: LukasEbeling Date: Mon, 16 Dec 2024 15:57:25 +0100 Subject: [PATCH 58/76] path to dqm dir changed --- automation/merge_per_run.py | 5 +---- 1 file changed, 1 insertion(+), 4 deletions(-) diff --git a/automation/merge_per_run.py b/automation/merge_per_run.py index 375a07b..9c0ef48 100644 --- a/automation/merge_per_run.py +++ b/automation/merge_per_run.py @@ -6,11 +6,8 @@ # parse arguments htcondor = htcondor_flag() -# work around for the moment, remove later -dqm_official = '/eos/cms/store/group/dpg_trigger/comm_trigger/L1Trigger/cmsl1dpg/www/DQM/T0PromptNanoMonit' - # collect all base histogram root files -all_files = glob(f"{dqm_official}/*/*/*/*/*/*/*.root") +all_files = glob(f"{dqm_prefix}/*/*/*/*/*/*/*.root") cleaned_files = clean(all_files) # group files by runnum, by era, and by year From 68a86e904fd85d636d353cf0536eada39f47a616 Mon Sep 17 00:00:00 2001 From: LukasEbeling Date: Thu, 30 Jan 2025 13:38:02 +0100 Subject: [PATCH 59/76] tar file removed --- automation/submit.txt | 2 -- automation/wrapper.py | 3 +-- 2 files changed, 1 insertion(+), 4 deletions(-) diff --git a/automation/submit.txt b/automation/submit.txt index 4d6f579..3f973fb 100644 --- a/automation/submit.txt +++ b/automation/submit.txt @@ -8,6 +8,4 @@ log = logs/$(ClusterId).$(ProcId).log should_transfer_files = yes when_to_transfer_output = on_exit -transfer_input_files = /afs/cern.ch/user/l/lebeling/MacrosNtuples.tar.gz - queue cmd from queue.txt \ No newline at end of file diff --git a/automation/wrapper.py b/automation/wrapper.py index 8b41371..a5bdc82 100755 --- a/automation/wrapper.py +++ b/automation/wrapper.py @@ -12,8 +12,7 @@ concatenated_cmd = ' '.join(args.cmd) concatenated_cmd = concatenated_cmd.replace("___", " ") -#concatenated_cmd = 'tar -xzf MacrosNtuples.tar.gz; cd MacrosNtuples/l1macros; ' + concatenated_cmd concatenated_cmd = f'cd {repository}/automation; ' + concatenated_cmd -print('command to be executed: ' + concatenated_cmd) +print('command executed: ' + concatenated_cmd) os.system(concatenated_cmd) From a85cb472dc103f191a49a13e092ad2d23e37638d Mon Sep 17 00:00:00 2001 From: LukasEbeling Date: Thu, 30 Jan 2025 13:38:33 +0100 Subject: [PATCH 60/76] replace removed --- automation/merge_per_run.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/automation/merge_per_run.py b/automation/merge_per_run.py index 9c0ef48..7e53035 100644 --- a/automation/merge_per_run.py +++ b/automation/merge_per_run.py @@ -18,7 +18,7 @@ filehash = parts[-2] # group by runnum - target = file.replace(filehash, "merged").replace(dqm_official, dqm_prefix) + target = file.replace(filehash, "merged") if target not in file_groups: file_groups[target] = [] file_groups[target].append(file) From 1253c672d33cba264e5f940177ba5896435a6772 Mon Sep 17 00:00:00 2001 From: LukasEbeling Date: Mon, 17 Mar 2025 15:20:13 +0100 Subject: [PATCH 61/76] commented out for testing cron job --- automation/cron_job.sh | 11 ++++++----- 1 file changed, 6 insertions(+), 5 deletions(-) mode change 100644 => 100755 automation/cron_job.sh diff --git a/automation/cron_job.sh b/automation/cron_job.sh old mode 100644 new mode 100755 index 905c8fa..1b528d2 --- a/automation/cron_job.sh +++ b/automation/cron_job.sh @@ -1,6 +1,7 @@ #!/bin/bash -python3 make_hists.py -python3 merge_per_run.py -python3 merge_per_era.py -python3 merge_total.py -python3 make_plots.py \ No newline at end of file +# python3 make_hists.py +# python3 merge_per_run.py +# python3 merge_per_era.py +# python3 merge_total.py +# python3 make_plots.py +echo "All done!" \ No newline at end of file From 467228c2cbc1aa7a554d5af60de522ddfdfa3aa1 Mon Sep 17 00:00:00 2001 From: LukasEbeling Date: Mon, 17 Mar 2025 15:20:38 +0100 Subject: [PATCH 62/76] no double merging --- automation/merge_per_run.py | 1 + 1 file changed, 1 insertion(+) diff --git a/automation/merge_per_run.py b/automation/merge_per_run.py index 7e53035..dfd3b78 100644 --- a/automation/merge_per_run.py +++ b/automation/merge_per_run.py @@ -8,6 +8,7 @@ # collect all base histogram root files all_files = glob(f"{dqm_prefix}/*/*/*/*/*/*/*.root") +all_files = [f for f in all_files if 'merged' not in f] cleaned_files = clean(all_files) # group files by runnum, by era, and by year From bb04a6f91c58709a31dc94659e89d4af23f3d556 Mon Sep 17 00:00:00 2001 From: LukasEbeling Date: Mon, 17 Mar 2025 16:23:24 +0100 Subject: [PATCH 63/76] year no longer hard coded --- automation/utils.py | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/automation/utils.py b/automation/utils.py index 339f919..66cc5b5 100644 --- a/automation/utils.py +++ b/automation/utils.py @@ -33,8 +33,8 @@ def write_queue(script, infile = "", outdir = ""): # return weeks as dict with runnum as key -> weeks[runx] = 42 -def get_weeks(): - oms_path = "/eos/cms/store/group/tsg/STEAM/OMSRateNtuple/2024/physics.root" +def get_weeks(year=2024): + oms_path = f"/eos/cms/store/group/tsg/STEAM/OMSRateNtuple/{year}/physics.root" with uproot.open(oms_path) as f: df = f["tree"].arrays( filter_name = ['run', 'year', 'month', 'day'], From a738ebb185af8af70decdb7c36647e565d4c57b6 Mon Sep 17 00:00:00 2001 From: LukasEbeling Date: Tue, 18 Mar 2025 10:58:30 +0100 Subject: [PATCH 64/76] install path automatically found --- automation/wrapper.py | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/automation/wrapper.py b/automation/wrapper.py index a5bdc82..67030d3 100755 --- a/automation/wrapper.py +++ b/automation/wrapper.py @@ -3,7 +3,7 @@ import argparse import os -repository = '/afs/cern.ch/user/l/lebeling/MacrosNtuples' +automation_path = os.path.dirname(os.path.abspath(__file__)) # parse commands to be executed as arguments parser = argparse.ArgumentParser(description="wrapper running script on htcondor") @@ -12,7 +12,7 @@ concatenated_cmd = ' '.join(args.cmd) concatenated_cmd = concatenated_cmd.replace("___", " ") -concatenated_cmd = f'cd {repository}/automation; ' + concatenated_cmd +concatenated_cmd = f'cd {automation_path}; ' + concatenated_cmd print('command executed: ' + concatenated_cmd) os.system(concatenated_cmd) From 83a186ece4e67a6b42ee05703d8e5ede5b5520ee Mon Sep 17 00:00:00 2001 From: LukasEbeling Date: Tue, 18 Mar 2025 10:58:38 +0100 Subject: [PATCH 65/76] log file added --- .gitignore | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/.gitignore b/.gitignore index a620c38..3a80a27 100644 --- a/.gitignore +++ b/.gitignore @@ -1,3 +1,4 @@ **/__pycache__/** /automation/logs/** -/automation/queue.txt \ No newline at end of file +/automation/queue.txt +**.log \ No newline at end of file From ec970976fa3aa368eae73d7d5fc1b783f1e23cb9 Mon Sep 17 00:00:00 2001 From: LukasEbeling Date: Tue, 18 Mar 2025 10:59:50 +0100 Subject: [PATCH 66/76] cron jobs capped at 10 files per dataset --- automation/make_hists.py | 70 ++++++++++++++++++++-------------------- 1 file changed, 35 insertions(+), 35 deletions(-) diff --git a/automation/make_hists.py b/automation/make_hists.py index 670e192..ee22ee9 100644 --- a/automation/make_hists.py +++ b/automation/make_hists.py @@ -1,41 +1,41 @@ #!/bin/python3 - -import os, yaml +import yaml, os from glob import glob -from utils import write_queue, parse_file, run_command, htcondor_flag, tier0, dqm_prefix +from utils import htcondor_flag, parse_file, run_command, write_queue, tier0, dqm_prefix -config_dict = yaml.safe_load(open('config.yaml', 'r')) +config_file = yaml.safe_load(open('config.yaml', 'r')) htcondor = htcondor_flag() -# main logic: glob files on tier 0 and run plotting scripts -for label, config in config_dict.items(): - print(20*"#" + f" Running plots for {label} " + 20*"#") - - # step 1 - find all files on tier 0 - fnames = [] - for dataset in config["datasets"]: - for era in config["eras"]: - fnames += glob(f"{tier0}/{era}/{dataset}/NANOAOD/PromptReco-v*/*/*/*/*/*.root") - - # step 2 - for each file, run scripts - # fnames = fnames[:100] - for fname in fnames: - print(f"Processing file {fname}") - - out_web_path = dqm_prefix + parse_file(fname) - - # abort if histogram root files already exist - root_files = glob(f"{out_web_path}/*.root") - if len(root_files) > 0: - print(f"Skipping {out_web_path} - already processed") - continue - - for cmd in config["scripts"]: - cmd = cmd.replace("$OUTDIR", out_web_path) - cmd = cmd.replace("$INFILE", fname) - - os.makedirs(out_web_path, exist_ok=True) - - if htcondor: write_queue(cmd) # write script into htcondor queue file - else: run_command(cmd, out_web_path+"/log.txt") # run script on current shell + +for label, config in config_file.items(): + + #step 1 - find all files on tier 0 + fnames = [glob(f"{tier0}/{era}/{dataset}/NANOAOD/PromptReco-v*/*/*/*/*/*.root") + for era in config["eras"] for dataset in config["datasets"]] + fnames = [item for sublist in fnames for item in sublist] + + #step 2 - remove files that have already been processed + for file in fnames: + output_path = dqm_prefix + parse_file(file) + num_root_files = len(glob(f"{output_path}/*.root")) + if num_root_files > 0: fnames.remove(file) + + + #step 3 - run scripts + #enumerate over all files + for i, file in enumerate(fnames): + if not htcondor and i == 10: break + + print(f"Processing file {file}") + + output_path = dqm_prefix + parse_file(file) + + for cmd in config["scripts"]: + cmd = cmd.replace("$OUTDIR", output_path) + cmd = cmd.replace("$INFILE", file) + + os.makedirs(output_path, exist_ok=True) + + if htcondor: write_queue(cmd) + else: run_command(cmd, output_path + "/log.txt") \ No newline at end of file From 10e561b0b0b7894ad82de6bbd65d71dc31776c2e Mon Sep 17 00:00:00 2001 From: LukasEbeling Date: Tue, 18 Mar 2025 11:26:04 +0100 Subject: [PATCH 67/76] more verbose --- automation/README.md | 62 +++++++++++++++++++------------------------- 1 file changed, 27 insertions(+), 35 deletions(-) diff --git a/automation/README.md b/automation/README.md index 98c66b8..d9c2f3a 100644 --- a/automation/README.md +++ b/automation/README.md @@ -1,48 +1,40 @@ # Automation Tool Kit -Tool kit to (semi) automize production of DQM plot from NanoAODs stored on tier 0. -Two modes of operation are offered: -- via cron job: recommended for daily processing of new files -- via htcondor: recommended for rerunning all files currently on tier 0 +Tool kit to (semi) automize production of DQM plot from NanoAODs stored on tier 0. The automation is based on the cron job scheduler which executes bash scripts and commands periodically. The following commands will be useful: -Further details are provided below. The different processing steps are summarized as: +- show list of scheduled cron jobs: `acrontab -l` +- remove all scheduled cron jobs: `acrontab -r` +- open cron job editior: `acrontab -e` -1) Histograms -Run `python3 make_hists.py` to produce `.root` files containing histograms for all data types (i.e. EGamma, Muon, JetMet). Which selections are run is specified in `config.yaml` (see scritps). If the respective output file already exists, the histogram production is skipped. - -2) Merge per Run -Run `python3 merge_per_run.py` to merge (i.e. hadd) the histogram files per run. If the respective output file already exists and is newer than all base histogram files, the merging is skipped. +Inside the cron jib editior: +- save changes via ctrl+o +- close editior via ctrl+x -3) Merge per era/week -Run `python3 merge_per_era.py` to further merge (i.e. hadd) the histograms per era (i.e. Run2024H) and per week using the merged histograms per run. If the respective output file already exists and is newer than all base histogram files, the merging is skipped. +Before running the automation tool kit, adjust the output path (i.e. the directory in which all plots and histogram are deployed) in: `utils.py` -> `dqm_prefix` -4) Merge per type -Run `python3 merge_total.py` to merge (i.e. hadd) all histograms of one data type (i.e. EGamma, Muon, JetMet) using the merged histograms per era. If the respective output file already exists and is newer than all base histogram files, the merging is skipped. +To run the automation tool kit, open the cron editor and paste the following command (replace *PATH* by the actual installation path on lxplus): +``` +* */1 * * * lxplus cd /PATH/MacrosNtuples/automation && sh cron_job.sh >>cron.log 2>&1 +``` +Cron will execute the command once every hour saving the output messages (and errors) into the *cron.log* logfile. More details on how to configure the timing of a cron job, can be found [here](https://crontab.guru). -5) Plotting -Run `make_plots.py` to produce png/pdf plots from all merged histograms (merge per run/era/week/total). The plotting repective scripts are specified `condfig.yaml`. If the png/pdf files already exist and are newer than the histogram files, the plotting is skipped. - -## Init -Clone the repository into afs directory on lxplus: -`git clone git@github.com:LukasEbeling/MacrosNtuples.git` +## automation steps +The different processing steps are summarized as: -Adjust output path (i.e. directory in which all plots and histogram are deployed): -automation -> `utils.py` -> `dqm_prefix` +1) histograms +Run `python3 make_hists.py` to produce `.root` files containing histograms for all data types (i.e. EGamma, Muon, JetMet). Which selections are run is specified in `config.yaml` (see scritps). If the respective output file already exists, the histogram production is skipped. -Asdjust repository path in `wrapper.py` to user installation of `MacrosNtuples` +2) merge per run +Run `python3 merge_per_run.py` to merge (i.e. hadd) the histogram files per run. If the respective output file already exists and is newer than all base histogram files, the merging is skipped. -## Setup for cron -To periodically process new files on tier 0, the following cron job is recommended: -```*/10 * * * * lxplus . cron_job.sh``` +3) merge per era/week +Run `python3 merge_per_era.py` to further merge (i.e. hadd) the histograms per era (i.e. Run2024H) and per week using the merged histograms per run. If the respective output file already exists and is newer than all base histogram files, the merging is skipped. -Further usefull commands: -Show cron job list via `acrontab -l` -Edit cron job list via `acrontab -e` -Exit cron job list via `ctrl+O`/`ctrl+X` -Delete full cron job list via `acrontab -r` +4) merge per type +Run `python3 merge_total.py` to merge (i.e. hadd) all histograms of one data type (i.e. EGamma, Muon, JetMet) using the merged histograms per era. If the respective output file already exists and is newer than all base histogram files, the merging is skipped. -## Setup for htcondor -All prduction steps listed above can be run on htcondor. Using the flag `--htcondor`, the repective commands are not directly executed but instead written into the `queue.txt` file. With `condor_submit submit.txt`, all commands in the queue are submitted to htcondor. This mode is recommended to (re-)run all files currently stored on tier 0. +5) plotting +Run `make_plots.py` to produce png/pdf plots from all merged histograms (merge per run/era/week/total). The plotting repective scripts are specified `condfig.yaml`. If the png/pdf files already exist and are newer than the histogram files, the plotting is skipped. -## Major Patch Notes -Previously, plotting scripts were submitted to htcondor as ```MacrosNtuples.tar.gz```. No longer needed, as htcondor has access to afs directory. \ No newline at end of file +## htcondor setup +All prduction steps listed above can be run on htcondor. Using the flag `--htcondor`, the repective plotting scripts are not directly executed but instead written into the `queue.txt` file. With `condor_submit submit.txt`, all commands in the queue are submitted to htcondor. This mode is highly recommended to (re-)run all files currently stored on tier 0. \ No newline at end of file From ba613a463be3f2bd72aa4eda4c31c60b8c56f6ee Mon Sep 17 00:00:00 2001 From: LukasEbeling Date: Wed, 19 Mar 2025 15:02:28 +0100 Subject: [PATCH 68/76] code commented in --- automation/cron_job.sh | 10 +++++----- 1 file changed, 5 insertions(+), 5 deletions(-) diff --git a/automation/cron_job.sh b/automation/cron_job.sh index 1b528d2..457fa01 100755 --- a/automation/cron_job.sh +++ b/automation/cron_job.sh @@ -1,7 +1,7 @@ #!/bin/bash -# python3 make_hists.py -# python3 merge_per_run.py -# python3 merge_per_era.py -# python3 merge_total.py -# python3 make_plots.py +python3 make_hists.py +python3 merge_per_run.py +python3 merge_per_era.py +python3 merge_total.py +python3 make_plots.py echo "All done!" \ No newline at end of file From 259f8052c90a17792ac8278be30d2439e79ec6f2 Mon Sep 17 00:00:00 2001 From: LukasEbeling Date: Mon, 19 May 2025 10:02:51 +0200 Subject: [PATCH 69/76] commented for testing --- automation/cron_job.sh | 13 +++++++------ 1 file changed, 7 insertions(+), 6 deletions(-) diff --git a/automation/cron_job.sh b/automation/cron_job.sh index 457fa01..53ae864 100755 --- a/automation/cron_job.sh +++ b/automation/cron_job.sh @@ -1,7 +1,8 @@ #!/bin/bash -python3 make_hists.py -python3 merge_per_run.py -python3 merge_per_era.py -python3 merge_total.py -python3 make_plots.py -echo "All done!" \ No newline at end of file +# python3 make_hists.py +# python3 merge_per_run.py +# python3 merge_per_era.py +# python3 merge_total.py +# python3 make_plots.py +date +echo "All done!" \ No newline at end of file From a328aaad4b2957a28406b3a5336c02e9e8d1da8f Mon Sep 17 00:00:00 2001 From: Lukas Ebeling <120715528+LukasEbeling@users.noreply.github.com> Date: Tue, 27 May 2025 14:56:24 +0200 Subject: [PATCH 70/76] Update README.md --- automation/README.md | 8 +++++++- 1 file changed, 7 insertions(+), 1 deletion(-) diff --git a/automation/README.md b/automation/README.md index d9c2f3a..b27124f 100644 --- a/automation/README.md +++ b/automation/README.md @@ -5,6 +5,12 @@ Tool kit to (semi) automize production of DQM plot from NanoAODs stored on tier - remove all scheduled cron jobs: `acrontab -r` - open cron job editior: `acrontab -e` +last acron command: +``` +0 * * * * lxplus cd /afs/cern.ch/user/l/lebeling/MacrosNtuples/automation && sh cron_job.sh >>cron.log 2>&1 +``` + + Inside the cron jib editior: - save changes via ctrl+o - close editior via ctrl+x @@ -37,4 +43,4 @@ Run `python3 merge_total.py` to merge (i.e. hadd) all histograms of one data typ Run `make_plots.py` to produce png/pdf plots from all merged histograms (merge per run/era/week/total). The plotting repective scripts are specified `condfig.yaml`. If the png/pdf files already exist and are newer than the histogram files, the plotting is skipped. ## htcondor setup -All prduction steps listed above can be run on htcondor. Using the flag `--htcondor`, the repective plotting scripts are not directly executed but instead written into the `queue.txt` file. With `condor_submit submit.txt`, all commands in the queue are submitted to htcondor. This mode is highly recommended to (re-)run all files currently stored on tier 0. \ No newline at end of file +All prduction steps listed above can be run on htcondor. Using the flag `--htcondor`, the repective plotting scripts are not directly executed but instead written into the `queue.txt` file. With `condor_submit submit.txt`, all commands in the queue are submitted to htcondor. This mode is highly recommended to (re-)run all files currently stored on tier 0. From a0c095dc2f08691626936627cc1d10902edcaa51 Mon Sep 17 00:00:00 2001 From: Atul Jaiswal Date: Wed, 28 May 2025 13:09:01 +0200 Subject: [PATCH 71/76] Modifications for running on 2025 PromptNano. PF JetID definition added in helper modules. EtSum histos are turned off temporarirly. --- automation/config.yaml | 10 +++++---- automation/make_hists.py | 25 ++++++++++++++++------ automation/merge_per_run.py | 4 ++++ helpers/helper_nano.py | 32 ++++++++++++++++++++++------ helpers/helper_nano_dqmoff.py | 24 +++++++++++++++++++-- l1macros/performances_nano.py | 7 ++++-- l1macros/performances_nano_dqmoff.py | 2 ++ 7 files changed, 83 insertions(+), 21 deletions(-) diff --git a/automation/config.yaml b/automation/config.yaml index 3b870c4..407c12f 100644 --- a/automation/config.yaml +++ b/automation/config.yaml @@ -3,7 +3,7 @@ JetMET: - 'JetMET0' - 'JetMET1' eras: - - 'Run2024*' + - 'Run2025*' scripts: - 'python3 ../l1macros/performances_nano.py -i $INFILE -o $OUTDIR/all_DiJet.root -c DiJet' plotting: @@ -13,8 +13,10 @@ EGamma: datasets: - 'EGamma0' - 'EGamma1' + - 'EGamma2' + - 'EGamma3' eras: - - 'Run2024*' + - 'Run2025*' scripts: - 'python3 ../l1macros/performances_nano.py -i $INFILE -o $OUTDIR/all_PhotonJet.root -c PhotonJet' - 'python3 ../l1macros/performances_nano.py -i $INFILE -o $OUTDIR/all_ZToEE.root -c ZToEE' @@ -28,7 +30,7 @@ Muon: - 'Muon0' - 'Muon1' eras: - - 'Run2024*' + - 'Run2025*' scripts: - 'python3 ../l1macros/performances_nano.py -i $INFILE -o $OUTDIR/all_ZToMuMu.root -c ZToMuMu' - 'python3 ../l1macros/performances_nano.py -i $INFILE -o $OUTDIR/all_MuonJet.root -c MuonJet' #TODO not working @@ -40,4 +42,4 @@ Muon: plotting: - 'python3 ../plotting/make_ZToMuMu_plots.py --dir $OUTDIR --config ../config_cards/full_ZToMuMu.yaml' - 'python3 ../plotting/make_ZToTauTau_plots.py --dir $OUTDIR --config ../config_cards/full_ZToTauTau.yaml' - - 'python3 ../plotting/make_MuonJet_plots.py --dir $OUTDIR --config ../config_cards/full_MuonJet.yaml' \ No newline at end of file + - 'python3 ../plotting/make_MuonJet_plots.py --dir $OUTDIR --config ../config_cards/full_MuonJet.yaml' diff --git a/automation/make_hists.py b/automation/make_hists.py index ee22ee9..510f084 100644 --- a/automation/make_hists.py +++ b/automation/make_hists.py @@ -11,21 +11,32 @@ for label, config in config_file.items(): #step 1 - find all files on tier 0 - fnames = [glob(f"{tier0}/{era}/{dataset}/NANOAOD/PromptReco-v*/*/*/*/*/*.root") - for era in config["eras"] for dataset in config["datasets"]] - fnames = [item for sublist in fnames for item in sublist] - + #fnames = [glob(f"{tier0}/{era}/{dataset}/NANOAOD/PromptReco-v*/*/*/*/*/*.root") for era in config["eras"] for dataset in config["datasets"]] + fnames = [] + for era in config["eras"]: + for dataset in config["datasets"]: + files = glob(f"{tier0}/{era}/{dataset}/NANOAOD/PromptReco-v*/*/*/*/*/*.root") + #print(files) + for f in files: + part = f.split("/") + run_str = part[-4] + part[-3] + run_num = int(run_str) + if run_num >= 392241: + fnames.append(f) + #fnames = [item for sublist in fnames1 for item in sublist] #step 2 - remove files that have already been processed for file in fnames: output_path = dqm_prefix + parse_file(file) num_root_files = len(glob(f"{output_path}/*.root")) - if num_root_files > 0: fnames.remove(file) + if num_root_files > 0: + fnames.remove(file) + print(file + " not processed") #step 3 - run scripts #enumerate over all files for i, file in enumerate(fnames): - if not htcondor and i == 10: break + #if not htcondor and i == 10: break print(f"Processing file {file}") @@ -38,4 +49,4 @@ os.makedirs(output_path, exist_ok=True) if htcondor: write_queue(cmd) - else: run_command(cmd, output_path + "/log.txt") \ No newline at end of file + else: run_command(cmd, output_path + "/log.txt") diff --git a/automation/merge_per_run.py b/automation/merge_per_run.py index dfd3b78..15e2ef6 100644 --- a/automation/merge_per_run.py +++ b/automation/merge_per_run.py @@ -15,6 +15,10 @@ file_groups = {} for file in cleaned_files: parts = file.split('/') + run = int(parts[-3]) + era = parts[-6] + dataset = parts[-7] + filename = parts[-1] filehash = parts[-2] diff --git a/helpers/helper_nano.py b/helpers/helper_nano.py index 0c57026..ba29a27 100644 --- a/helpers/helper_nano.py +++ b/helpers/helper_nano.py @@ -61,7 +61,7 @@ def make_filter(golden_json): } for(unsigned int i = 0;i< (Jet_pt).size();i++ ){ cout << "jet Pt, Eta, Phi: " << (Jet_pt)[i]<<", "<<(Jet_eta)[i]<<", "<<(Jet_phi)[i]<=6&&Jet_pt>500&&Jet_muEF<0.5&&Jet_chEmEF<0.5&&Jet_neEmEF<0.8') - + #df = df.Define('isHighPtJet','Jet_jetId>=6&&Jet_pt>500&&Jet_muEF<0.5&&Jet_chEmEF<0.5&&Jet_neEmEF<0.8') + df = df.Define('isHighPtJet', 'passPFJetID && Jet_pt > 500 && Jet_muEF < 0.5 && Jet_chEmEF < 0.5 && Jet_neEmEF < 0.8') + df = df.Filter('Sum(isHighPtJet)==2','=2 jets with pt>500 GeV') df = df.Filter('isHighPtJet[0]&&isHighPtJet[1]','First 2 jets are the cleaned jets') df = df.Define('highPtJet_Pt','Jet_pt[isHighPtJet]') @@ -634,11 +635,30 @@ def L1ETMHF(df): return df +def PassPFJetID(df): + # Jet ID based on energy fractions and multiplicities + df = df.Define("absJetEta", "abs(Jet_eta)") + df = df.Define("passPFJetID", + """ + (absJetEta <= 2.6 && Jet_neHEF < 0.90 && Jet_neEmEF < 0.90 && Jet_nConstituents > 1 && + Jet_muEF < 0.80 && Jet_chHEF > 0.01 && Jet_chMultiplicity > 0 && Jet_chEmEF < 0.80) || + + (absJetEta > 2.6 && absJetEta <= 2.7 && Jet_neHEF < 0.90 && Jet_neEmEF < 0.99 && + Jet_muEF < 0.80 && Jet_chEmEF < 0.80) || + + (absJetEta > 2.7 && absJetEta <= 3.0 && Jet_neHEF < 0.9999) || + + (absJetEta > 3.0 && absJetEta <= 5.0 && Jet_neEmEF < 0.90 && Jet_neMultiplicity > 2) + """ + ) + + return df def CleanJets(df): #List of cleaned jets (noise cleaning + lepton/photon overlap removal) - df = df.Define('_jetPassID', 'Jet_jetId>=4') - df = df.Define('isCleanJet','_jetPassID&&Jet_pt>30&&Jet_muEF<0.5&&Jet_chEmEF<0.5') + #df = df.Define('_jetPassID', 'Jet_jetId>=4') + #df = df.Define('isCleanJet','_jetPassID&&Jet_pt>30&&Jet_muEF<0.5&&Jet_chEmEF<0.5') + df = df.Define('isCleanJet', 'passPFJetID && Jet_pt > 30 && Jet_muEF < 0.5 && Jet_chEmEF < 0.5') df = df.Define('cleanJet_Pt','Jet_pt[isCleanJet]') df = df.Define('cleanJet_Eta','Jet_eta[isCleanJet]') df = df.Define('cleanJet_Phi','Jet_phi[isCleanJet]') diff --git a/helpers/helper_nano_dqmoff.py b/helpers/helper_nano_dqmoff.py index 4157e40..22aa491 100644 --- a/helpers/helper_nano_dqmoff.py +++ b/helpers/helper_nano_dqmoff.py @@ -196,8 +196,9 @@ def DQMOff_JetSelection(df): return false; ''') - df = df.Define('isGoodJet', 'Jet_jetId>=4') - df = df.Filter('Sum(isGoodJet)>0') + #df = df.Define('isGoodJet', 'Jet_jetId>=4') + #df = df.Filter('Sum(isGoodJet)>0') + df = df.Filter('Sum(passPFJetID)>0') df = df.Define('isLead', 'isLeadJet(Jet_pt, isGoodJet)') df = df.Define('leadJetPt', 'Jet_pt[isLead]') @@ -225,6 +226,25 @@ def DQMOff_EtSumSelection(df): return df +def PassPFJetID(df): + # Jet ID based on energy fractions and multiplicities + df = df.Define("absJetEta", "abs(Jet_eta)") + df = df.Define("passPFJetID", + """ + (absJetEta <= 2.6 && Jet_neHEF < 0.90 && Jet_neEmEF < 0.90 && Jet_nConstituents > 1 && + Jet_muEF < 0.80 && Jet_chHEF > 0.01 && Jet_chMultiplicity > 0 && Jet_chEmEF < 0.80) || + + (absJetEta > 2.6 && absJetEta <= 2.7 && Jet_neHEF < 0.90 && Jet_neEmEF < 0.99 && + Jet_muEF < 0.80 && Jet_chEmEF < 0.80) || + + (absJetEta > 2.7 && absJetEta <= 3.0 && Jet_neHEF < 0.9999) || + + (absJetEta > 3.0 && absJetEta <= 5.0 && Jet_neEmEF < 0.90 && Jet_neMultiplicity > 2) + """ + ) + + return df + def ZEE_DQMOff_Plots(df, suffix = ''): diff --git a/l1macros/performances_nano.py b/l1macros/performances_nano.py index a69fdd3..f6fb37a 100644 --- a/l1macros/performances_nano.py +++ b/l1macros/performances_nano.py @@ -121,7 +121,8 @@ def main(): h.set_runnb_bins(df) #Define ETMHF - df = h.L1ETMHF(df) + #df = h.L1ETMHF(df) + if args.outputFile == '': args.outputFile = 'output_'+args.channel+'.root' out = ROOT.TFile(args.outputFile, "recreate") @@ -134,7 +135,9 @@ def main(): # add nvtx histo nvtx_histo = df.Histo1D(ROOT.RDF.TH1DModel("h_nvtx" , "Number of reco vertices;N_{vtx};Events" , 100, 0., 100.), "PV_npvs") - + # Define PF JetID + df = h.PassPFJetID(df) + if args.channel == 'PhotonJet': df = h.SinglePhotonSelection(df) diff --git a/l1macros/performances_nano_dqmoff.py b/l1macros/performances_nano_dqmoff.py index 4afb420..dbf3e8d 100644 --- a/l1macros/performances_nano_dqmoff.py +++ b/l1macros/performances_nano_dqmoff.py @@ -126,6 +126,8 @@ def main(): nvtx_histo = df.Histo1D(ROOT.RDF.TH1DModel("h_nvtx" , "Number of reco vertices;N_{vtx};Events" , 100, 0., 100.), "PV_npvs") nvtx_histo.GetValue().Write() + # Define PF JetID + df = h.PassPFJetID(df) if args.channel == 'ZToEEDQMOff': From ff937c430c0762433e6f1dce78536e3d7ed7f7bc Mon Sep 17 00:00:00 2001 From: LukasEbeling Date: Fri, 20 Jun 2025 10:06:52 +0200 Subject: [PATCH 72/76] output directory is created if it does not exist --- plotting/make_DiJet_plots.py | 3 +++ plotting/make_MuonJet_plots.py | 3 +++ plotting/make_PhotonJet_plots.py | 3 +++ plotting/make_ZToEE_plots.py | 3 +++ plotting/make_ZToMuMu_plots.py | 3 +++ plotting/make_ZToTauTau_plots.py | 4 ++++ 6 files changed, 19 insertions(+) diff --git a/plotting/make_DiJet_plots.py b/plotting/make_DiJet_plots.py index 7901955..5fc6c67 100644 --- a/plotting/make_DiJet_plots.py +++ b/plotting/make_DiJet_plots.py @@ -5,6 +5,7 @@ import yaml import drawplots import argparse +import os def main(): parser = argparse.ArgumentParser( @@ -30,6 +31,8 @@ def main(): bins = config['PU_plots']['nvtx_bins'] suffixes += ['_nvtx{}to{}'.format(bins[i], bins[i+1]) for i in range(len(bins) - 1)] + os.makedirs(args.dir + subfolder, exist_ok=True) + drawplots.makedist( inputFiles_list = [input_file], saveplot = True, diff --git a/plotting/make_MuonJet_plots.py b/plotting/make_MuonJet_plots.py index 27e84ac..3c2f034 100644 --- a/plotting/make_MuonJet_plots.py +++ b/plotting/make_MuonJet_plots.py @@ -5,6 +5,7 @@ import yaml import drawplots import argparse +import os def main(): parser = argparse.ArgumentParser( @@ -30,6 +31,8 @@ def main(): bins = config['PU_plots']['nvtx_bins'] suffixes += ['_nvtx{}to{}'.format(bins[i], bins[i+1]) for i in range(len(bins) - 1)] + os.makedirs(args.dir + subfolder, exist_ok=True) + # NVTX distribution: drawplots.makedist( diff --git a/plotting/make_PhotonJet_plots.py b/plotting/make_PhotonJet_plots.py index 072f6db..a8e10b7 100644 --- a/plotting/make_PhotonJet_plots.py +++ b/plotting/make_PhotonJet_plots.py @@ -5,6 +5,7 @@ import yaml import drawplots import argparse +import os def main(): parser = argparse.ArgumentParser( @@ -30,6 +31,8 @@ def main(): bins = config['PU_plots']['nvtx_bins'] suffixes += ['_nvtx{}to{}'.format(bins[i], bins[i+1]) for i in range(len(bins) - 1)] + os.makedirs(args.dir + subfolder, exist_ok=True) + # NVTX distribution: drawplots.makedist( diff --git a/plotting/make_ZToEE_plots.py b/plotting/make_ZToEE_plots.py index f9e210c..fb5e3f2 100644 --- a/plotting/make_ZToEE_plots.py +++ b/plotting/make_ZToEE_plots.py @@ -6,6 +6,7 @@ import yaml import drawplots import argparse +import os def main(): parser = argparse.ArgumentParser( @@ -31,6 +32,8 @@ def main(): bins = config['PU_plots']['nvtx_bins'] suffixes += ['_nvtx{}to{}'.format(bins[i], bins[i+1]) for i in range(len(bins) - 1)] + os.makedirs(args.dir + subfolder, exist_ok=True) + # NVTX distribution: drawplots.makedist( inputFiles_list = [input_file], diff --git a/plotting/make_ZToMuMu_plots.py b/plotting/make_ZToMuMu_plots.py index 849cd4b..043347f 100644 --- a/plotting/make_ZToMuMu_plots.py +++ b/plotting/make_ZToMuMu_plots.py @@ -6,6 +6,7 @@ import yaml import drawplots import argparse +import os def main(): parser = argparse.ArgumentParser( @@ -31,6 +32,8 @@ def main(): bins = config['PU_plots']['nvtx_bins'] suffixes += ['_nvtx{}to{}'.format(bins[i], bins[i+1]) for i in range(len(bins) - 1)] + os.makedirs(args.dir + subfolder, exist_ok=True) + # NVTX distribution: drawplots.makedist( inputFiles_list = [input_file], diff --git a/plotting/make_ZToTauTau_plots.py b/plotting/make_ZToTauTau_plots.py index 5d10935..ac6cfdf 100644 --- a/plotting/make_ZToTauTau_plots.py +++ b/plotting/make_ZToTauTau_plots.py @@ -1,9 +1,11 @@ eventselection='#mu+#tau_{h}' subfolder='/plotsL1Run3' channelname='ZToTauTau' + import yaml import drawplots import argparse +import os def main(): parser = argparse.ArgumentParser( @@ -28,6 +30,8 @@ def main(): if config['PU_plots']['make_histos']: bins = config['PU_plots']['nvtx_bins'] suffixes += ['_nvtx{}to{}'.format(bins[i], bins[i+1]) for i in range(len(bins) - 1)] + + os.makedirs(args.dir + subfolder, exist_ok=True) # NVTX distribution: From 5be8b7b25cf8c05dd93b348cf0a04fc1066b81b2 Mon Sep 17 00:00:00 2001 From: LukasEbeling Date: Fri, 20 Jun 2025 10:15:19 +0200 Subject: [PATCH 73/76] dirname based on topology --- plotting/make_DiJet_plots.py | 2 +- plotting/make_MuonJet_plots.py | 2 +- plotting/make_PhotonJet_plots.py | 2 +- plotting/make_ZToEE_plots.py | 2 +- plotting/make_ZToMuMu_plots.py | 2 +- plotting/make_ZToTauTau_plots.py | 2 +- 6 files changed, 6 insertions(+), 6 deletions(-) diff --git a/plotting/make_DiJet_plots.py b/plotting/make_DiJet_plots.py index 5fc6c67..3a4f369 100644 --- a/plotting/make_DiJet_plots.py +++ b/plotting/make_DiJet_plots.py @@ -1,5 +1,5 @@ eventselection='dijet' -subfolder='/plotsL1Run3' +subfolder='/plots_dijet' channelname='DiJet' import yaml diff --git a/plotting/make_MuonJet_plots.py b/plotting/make_MuonJet_plots.py index 3c2f034..9349fd9 100644 --- a/plotting/make_MuonJet_plots.py +++ b/plotting/make_MuonJet_plots.py @@ -1,5 +1,5 @@ eventselection='#mu+jet' -subfolder='/plotsL1Run3' +subfolder='/plots_muonjet' channelname='MuonJet' import yaml diff --git a/plotting/make_PhotonJet_plots.py b/plotting/make_PhotonJet_plots.py index a8e10b7..c869e98 100644 --- a/plotting/make_PhotonJet_plots.py +++ b/plotting/make_PhotonJet_plots.py @@ -1,5 +1,5 @@ eventselection='#gamma+jet' -subfolder='/plotsL1Run3' +subfolder='/plots_photonjet' channelname='PhotonJet' import yaml diff --git a/plotting/make_ZToEE_plots.py b/plotting/make_ZToEE_plots.py index fb5e3f2..eddd13d 100644 --- a/plotting/make_ZToEE_plots.py +++ b/plotting/make_ZToEE_plots.py @@ -1,6 +1,6 @@ # make_ZToEE_plots.py, a program to draw the L1Studies plots obtained from the histograms extracted from NanoAOD eventselection='Z#rightarrow ee' -subfolder='/plotsL1Run3' +subfolder='/plots_ztoee' channelname='ZToEE' import yaml diff --git a/plotting/make_ZToMuMu_plots.py b/plotting/make_ZToMuMu_plots.py index 043347f..d679bdb 100644 --- a/plotting/make_ZToMuMu_plots.py +++ b/plotting/make_ZToMuMu_plots.py @@ -1,6 +1,6 @@ # make_mu_plots.py, a program to draw the L1Studies plots obtained from the histograms extracted from NanoAOD eventselection='Z#rightarrow #mu#mu' -subfolder='/plotsL1Run3' +subfolder='/plots_ztomumu' channelname='ZToMuMu' import yaml diff --git a/plotting/make_ZToTauTau_plots.py b/plotting/make_ZToTauTau_plots.py index ac6cfdf..d5ae8fb 100644 --- a/plotting/make_ZToTauTau_plots.py +++ b/plotting/make_ZToTauTau_plots.py @@ -1,5 +1,5 @@ eventselection='#mu+#tau_{h}' -subfolder='/plotsL1Run3' +subfolder='/plots_ztotautau' channelname='ZToTauTau' import yaml From 55d7094b0baad4ae140fdd31da53cc7af542ba20 Mon Sep 17 00:00:00 2001 From: Atul Jaiswal <63446684+jaisatul@users.noreply.github.com> Date: Mon, 30 Jun 2025 17:48:13 +0530 Subject: [PATCH 74/76] Update helper_nano_dqmoff.py Fixed the bug. Good Jets now pass PF JetID. --- helpers/helper_nano_dqmoff.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/helpers/helper_nano_dqmoff.py b/helpers/helper_nano_dqmoff.py index 22aa491..80a9a64 100644 --- a/helpers/helper_nano_dqmoff.py +++ b/helpers/helper_nano_dqmoff.py @@ -199,7 +199,7 @@ def DQMOff_JetSelection(df): #df = df.Define('isGoodJet', 'Jet_jetId>=4') #df = df.Filter('Sum(isGoodJet)>0') df = df.Filter('Sum(passPFJetID)>0') - df = df.Define('isLead', 'isLeadJet(Jet_pt, isGoodJet)') + df = df.Define('isLead', 'isLeadJet(Jet_pt, passPFJetID)') df = df.Define('leadJetPt', 'Jet_pt[isLead]') df = df.Define('leadJetEta','Jet_eta[isLead]') From 588d5fd09b2d702bc4d80b1565a1f0f0595c427b Mon Sep 17 00:00:00 2001 From: Atul Jaiswal <63446684+jaisatul@users.noreply.github.com> Date: Tue, 1 Jul 2025 16:37:59 +0530 Subject: [PATCH 75/76] VBF MET+DiJet histo removed from helper_nano.EtSum() VBF MET+DiJet trigger path (HLT_DiJet110_35_Mjj650_PFMET110) is not present in 2024-2025 PromptNano. So the corresponding histogram is commented from helper_nano.EtSum() for now. --- helpers/helper_nano.py | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/helpers/helper_nano.py b/helpers/helper_nano.py index ba29a27..9d2a2a2 100644 --- a/helpers/helper_nano.py +++ b/helpers/helper_nano.py @@ -751,8 +751,8 @@ def EtSum(df, suffix = ''): # Normal (MET only) trigger histos['HLT_PFMETNoMu120_PFMHTNoMu120_IDTight_DiJet140_70_Mjj900'+suffix] = df.Filter('HLT_PFMETNoMu120_PFMHTNoMu120_IDTight&&vbf_selection').Histo1D(ROOT.RDF.TH1DModel('h_HLT_PFMETNoMu120_PFMHTNoMu120_IDTight_DiJet140_70_Mjj900'+suffix, '', len(jetmetpt_bins)-1, array('d',jetmetpt_bins)), 'MetNoMu') - # VBF (Met + jet) trigger - histos['HLT_DiJet110_35_Mjj650_PFMET110_DiJet140_70_Mjj900'+suffix] = df.Filter('HLT_DiJet110_35_Mjj650_PFMET110&&vbf_selection').Histo1D(ROOT.RDF.TH1DModel('h_HLT_DiJet110_35_Mjj650_PFMET110_DiJet140_70_Mjj900'+suffix, '', len(jetmetpt_bins)-1, array('d',jetmetpt_bins)), 'MetNoMu') + ## VBF (Met + jet) trigger + # histos['HLT_DiJet110_35_Mjj650_PFMET110_DiJet140_70_Mjj900'+suffix] = df.Filter('HLT_DiJet110_35_Mjj650_PFMET110&&vbf_selection').Histo1D(ROOT.RDF.TH1DModel('h_HLT_DiJet110_35_Mjj650_PFMET110_DiJet140_70_Mjj900'+suffix, '', len(jetmetpt_bins)-1, array('d',jetmetpt_bins)), 'MetNoMu') # VBF trigger if max(runnb_bins) > 367661: From 708b3168cb740557163782ae8b2a8c29c6b80165 Mon Sep 17 00:00:00 2001 From: LukasEbeling Date: Tue, 1 Jul 2025 15:06:17 +0200 Subject: [PATCH 76/76] MET plots switches off for now while debugging trigger paths. --- config_cards/full_MuonJet.yaml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/config_cards/full_MuonJet.yaml b/config_cards/full_MuonJet.yaml index c15e440..6302c72 100644 --- a/config_cards/full_MuonJet.yaml +++ b/config_cards/full_MuonJet.yaml @@ -27,7 +27,7 @@ Prefiring: true # Efficiency vs Run Nb and vs Eta Phi Efficiency: true # MET plots -MET_plots: true +MET_plots: false # HF noise HF_noise: true ### Settings for the plots in bins of nvtx