diff --git a/.github/workflows/reusable_docs.yml b/.github/workflows/reusable_docs.yml index bc2c4aaf..2722e225 100644 --- a/.github/workflows/reusable_docs.yml +++ b/.github/workflows/reusable_docs.yml @@ -52,6 +52,10 @@ jobs: git config --local user.email "github-actions[bot]@users.noreply.github.com" git config --local user.name "github-actions[bot]" + # Build docs + - name: Build docs + run: uv run mkdocs build + # Deploy latest tag - name: Deploy docs if: ${{ inputs.deploy_latest }} diff --git a/docs/included.py b/docs/included.py index 4ea01a2e..509c5f1e 100644 --- a/docs/included.py +++ b/docs/included.py @@ -1,12 +1,21 @@ from typing import Optional, cast import mkdocs_gen_files -from evalio.cli.ls import Kind, ls +from evalio.cli.ls import ls from rich.table import Table +import re def clean_cell(cell: str) -> str: """Clean a cell by removing unwanted characters.""" + # Convert to links + if cell.startswith("[link"): + match = re.match(r"\[link=(.*?)\](.*?)\[/link\]", cell) + if match: + url, text = match.groups() + cell = f"[{text}]({url})" + return cell + # Remove rich text formatting cell = cell.replace("[bright_black]", "").replace("[/bright_black]", "") # Remove line breaks @@ -15,9 +24,6 @@ def clean_cell(cell: str) -> str: cell = cell.replace(" ", " ") # Non line breaking hyphen cell = cell.replace("-", "‑") - # Convert to links - if cell.startswith("http"): - cell = f"[link]({cell})" return cell.strip() @@ -75,7 +81,7 @@ def rich_table_to_markdown( f.write(DATASETS) f.write("\n") - table = ls(Kind.datasets, show=False, show_hyperlinks=True) + table = ls("datasets", show=False) if table is not None: f.write(rich_table_to_markdown(table, skip_columns=["DL", "Size"])) @@ -91,6 +97,6 @@ def rich_table_to_markdown( f.write(PIPELINES) f.write("\n") - table = ls(Kind.pipelines, show=False, show_hyperlinks=True) + table = ls("pipelines", show=False) if table is not None: f.write(rich_table_to_markdown(table)) diff --git a/docs/ref/cli.md b/docs/ref/cli.md new file mode 100644 index 00000000..cc8523f8 --- /dev/null +++ b/docs/ref/cli.md @@ -0,0 +1,6 @@ +# evalio + +::: cyclopts + module: evalio.cli:app + generate_toc: false + code_block_title: true diff --git a/docs/ref/cli.py b/docs/ref/cli.py deleted file mode 100644 index 354792c3..00000000 --- a/docs/ref/cli.py +++ /dev/null @@ -1,8 +0,0 @@ -from contextlib import redirect_stdout - -import mkdocs_gen_files -from typer.cli import app - -with mkdocs_gen_files.open("ref/cli.md", "w") as f: - with redirect_stdout(f): - app(["evalio.cli", "utils", "docs", "--name", "evalio"]) diff --git a/mkdocs.yml b/mkdocs.yml index 82b2542a..db11c439 100644 --- a/mkdocs.yml +++ b/mkdocs.yml @@ -41,6 +41,7 @@ theme: watch: - python/ - cpp/ + - docs/ nav: - evalio: @@ -69,11 +70,13 @@ plugins: search: lang: en - # autogenerate evalio ls & cli pages + # autogenerate evalio ls gen-files: scripts: - docs/included.py - - docs/ref/cli.py + + # autogenerate cli docs + cyclopts: # Autogenerate docs from docstrings mkdocstrings: diff --git a/pyproject.toml b/pyproject.toml index d5c61b10..a6c00939 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -7,6 +7,7 @@ description = "Evaluate Lidar-Inertial Odometry on public datasets" readme = "README.md" requires-python = ">=3.11" dependencies = [ + "cyclopts==4.0", "asteval>=1.0.6", "distinctipy>=1.3.4", "gdown>=5.2.0", @@ -17,7 +18,6 @@ dependencies = [ "rapidfuzz>=3.12.2", "rosbags>=0.11.0", "tqdm>=4.66", - "typer>=0.15.3", ] keywords = [ "lidar", @@ -37,7 +37,7 @@ requires = ["scikit-build-core>=0.8", "nanobind>=2.9.2", "numpy"] build-backend = "scikit_build_core.build" [project.scripts] -evalio = "evalio.cli:app" +evalio = "evalio.cli:app.meta" # -------------- Tools -------------- # # building @@ -104,3 +104,6 @@ stubPath = "python/typings" reportPrivateUsage = "none" reportConstantRedefinition = "none" reportUnnecessaryIsInstance = "none" + +[tool.uv.sources] +cyclopts = { git = "https://github.com/BrianPugh/cyclopts.git", branch = "mkdocs-plugin" } diff --git a/python/evalio/cli/__init__.py b/python/evalio/cli/__init__.py index 1189397a..41a24aca 100644 --- a/python/evalio/cli/__init__.py +++ b/python/evalio/cli/__init__.py @@ -1,106 +1,202 @@ +from inspect import isclass from pathlib import Path -from typing import Annotated, Any, Optional - -import typer +from cyclopts import App, Group, Parameter +from cyclopts.completion import detect_shell +from cyclopts.help import DefaultFormatter, ColumnSpec, HelpEntry, PanelSpec, TableSpec +from enum import Enum +from rich.console import Console, ConsoleOptions +from typing import Any, Union, get_args, get_origin, Literal, Annotated, Optional + + +# ------------------------- Prettier Helper Pages ------------------------- # +# Define custom column renderers +def names_long(entry: HelpEntry) -> str: + """Combine parameter names and shorts.""" + if not entry.names: + return "" + # If positional with single name, just return it + if len(entry.names) == 1: + return entry.names[0] + # If multiples, skip ALL_CAPS + if entry.names[0].isupper(): + names = entry.names[1:] + else: + names = entry.names + + return " ".join(names).strip() + + +def render_type(type_: Any) -> str: + """Show the parameter type.""" + if type_ is bool: + return "" + elif type_ is str: + return "text" + elif type_ is int: + return "int" + elif type_ is float: + return "float" + elif type_ is Path: + return "path" + elif type_ is None: + return "" + elif (origin := get_origin(type_)) is Literal: + args = get_args(type_) + if len(args) > 5: + return "text" + return "|".join(str(a) for a in args) + elif origin is Union: + # handle Optional + args = get_args(type_) + if len(args) == 2 and type(None) in args: + type_ = args[0] if args[1] is type(None) else args[1] + return render_type(type_) + else: + return " | ".join(render_type(t) for t in args) + elif origin is list: + return render_type(get_args(type_)[0]) + elif isclass(type_) and issubclass(type_, Enum): + return "|".join(e.name for e in type_) + + raise ValueError(f"Unsupported type for rendering: {type_}") + + +def columns( + console: Console, options: ConsoleOptions, entries: list[HelpEntry] +) -> list[ColumnSpec]: + columns: list[ColumnSpec] = [] + + if any(e.required for e in entries): + columns.append( + ColumnSpec( + renderer=lambda e: "*" if e.required else " ", # type: ignore + width=1, + style="red bold", + ) + ) + + columns.extend( + [ + ColumnSpec( + renderer=names_long, + style="cyan", + ), + ColumnSpec( + renderer=lambda e: " ".join(e.shorts).strip() if e.shorts else "", # type: ignore + style="green", + max_width=30, + ), + ColumnSpec( + renderer=lambda e: render_type(e.type), # type: ignore + style="yellow", + justify="center", + ), + ColumnSpec( + renderer="description", # Use attribute name + overflow="fold", + ), + ] + ) + + return columns + + +# Create custom columns +spec = DefaultFormatter( + table_spec=TableSpec(show_header=False), + column_specs=columns, # type: ignore + panel_spec=PanelSpec(border_style="bright_black"), +) -import evalio -from evalio.datasets import set_data_dir -# import typer apps -from .dataset_manager import app as app_dl -from .ls import app as app_ls -from .run import app as app_run -from .stats import app as app_stats +# ------------------------- Make CLI App ------------------------- # +mg = Group("Misc", sort_key=1) +gg = Group("Global Options", sort_key=100) -app = typer.Typer( +app = App( + name="evalio", help="Tool for evaluating Lidar-Inertial Odometry pipelines on open-source datasets", - rich_markup_mode="rich", - no_args_is_help=True, - pretty_exceptions_enable=False, + help_formatter=spec, + help_on_error=True, + default_parameter=Parameter(negative=""), + version_flags=[], ) -app.add_typer(app_dl) -app.add_typer(app_ls) -app.add_typer(app_run) -app.add_typer(app_stats) +# Register commands +app.command("evalio.cli.ls:ls") +app.command("evalio.cli.dataset_manager:dl") +app.command("evalio.cli.dataset_manager:rm") +app.command("evalio.cli.dataset_manager:filter") +app.command("evalio.cli.stats:evaluate_cli", name="stats") +app.command("evalio.cli.run:run_from_cli", name="run") +app.register_install_completion_command(add_to_startup=True) # type: ignore +# Assign groups +app["--install-completion"].group = mg +app["--help"].group = gg -def version_callback(value: bool): - """ - Show version and exit. - """ - if value: - print(evalio.__version__) - raise typer.Exit() +for c in app: + if c in ["--help", "-h"]: + continue + app[c]["--help"].group = gg -def data_callback(value: Optional[Path]): +@app.command(name="--show-completion", group=mg) +def show_completion(): """ - Set the data directory. + Show shell completion script. """ - if value is not None: - set_data_dir(value) + comp = app.generate_completion() + # zsh needs an extra line + if detect_shell() == "zsh": + comp += "compdef _evalio evalio" + # Fix wildcard completions + comp = comp.replace("/*", "/\\*") + print(comp) -def module_callback(value: Optional[list[str]]) -> list[Any]: +@app.command(name="--version", alias="-V", group=mg) +def version(): """ - Set the module to use. + Show version and exit. """ - if value is not None: - for module in value: - evalio._register_custom_modules(module) + import evalio - return [] + print(evalio.__version__) -@app.callback() +@app.meta.default def global_options( - # Marking this as a str for now to get autocomplete to work, - # Once this fix is released (hasn't been as of 0.15.2), we can change it to a Path - # https://github.com/fastapi/typer/pull/1138 - data_dir: Annotated[ - Optional[Path], - typer.Option( - "-D", - "--data-dir", - help="Directory to store downloaded datasets.", - show_default=False, - rich_help_panel="Global options", - callback=data_callback, - ), - ] = None, - custom_modules: Annotated[ - Optional[list[str]], - typer.Option( - "-M", - "--module", - help="Custom module to load (for custom datasets or pipelines). Can be used multiple times.", - show_default=False, - rich_help_panel="Global options", - callback=module_callback, - ), - ] = None, - version: Annotated[ - bool, - typer.Option( - "--version", - "-V", - help="Show version and exit.", - is_eager=True, - show_default=False, - callback=version_callback, - ), - ] = False, + *tokens: Annotated[str, Parameter(show=False, allow_leading_hyphen=True)], + module: Annotated[Optional[list[str]], Parameter(alias="-M", group=gg)] = None, + data_dir: Annotated[Optional[Path], Parameter(alias="-D", group=gg)] = None, ): + """Define a number of global options that are set before any command is run. + + Args: + module (list[str]): Custom module to import. Can be repeated. + data_dir (Optional[Path]): Directory to store downloaded datasets. """ - Global options for the evalio CLI. - """ - pass + # Register custom modules + if module is not None: + from evalio import _register_custom_modules + + for m in module: + _register_custom_modules(m) + + # Set data directory + if data_dir is not None: + from evalio.datasets import set_data_dir + + set_data_dir(data_dir) + + app(tokens) + + +def launch(): + app.meta() __all__ = [ "app", ] - -if __name__ == "__main__": - app() diff --git a/python/evalio/cli/completions.py b/python/evalio/cli/completions.py deleted file mode 100644 index 63700bec..00000000 --- a/python/evalio/cli/completions.py +++ /dev/null @@ -1,119 +0,0 @@ -from typing import Annotated, Optional, TypeAlias - -import typer -from rapidfuzz.process import extractOne -from rich.console import Console -from evalio import datasets as ds, pipelines as pl - -err_console = Console(stderr=True) - -all_sequences_names = list(ds.all_sequences().keys()) - - -# ------------------------- Completions ------------------------- # -def complete_dataset(incomplete: str, ctx: typer.Context): - # TODO: Check for * to remove autocompletion for all of that dataset - already_listed: list[str] = ctx.params.get("datasets") or [] - - for name in all_sequences_names: - if name not in already_listed and name.startswith(incomplete): - yield name - - -def validate_datasets(datasets: list[str]) -> list[str]: - if not datasets: - return [] - - for dataset in datasets: - if dataset not in all_sequences_names: - closest, score, _idx = extractOne(dataset, all_sequences_names) # type: ignore - if score < 80: - msg = dataset - else: - # TODO: color would be nice here, but breaks rich panel spacing - # name = typer.style(closest, fg=typer.colors.RED) - msg = f"{dataset}\n A similar dataset exists: {closest}" - raise typer.BadParameter(msg, param_hint="dataset") - - if len(set(datasets)) != len(datasets): - raise typer.BadParameter("Duplicate datasets listed", param_hint="dataset") - - return datasets - - -valid_pipelines = list(pl.all_pipelines().keys()) - - -def complete_pipeline(incomplete: str, ctx: typer.Context): - already_listed: list[str] = ctx.params.get("pipelines") or [] - - for name in valid_pipelines: - if name not in already_listed and name.startswith(incomplete): - yield name - - -def validate_pipelines(pipelines: list[str]) -> list[str]: - if not pipelines: - return [] - - for pipeline in pipelines: - if pipeline not in valid_pipelines: - closest, score, _idx = extractOne(pipeline, valid_pipelines) # type: ignore - if score < 80: - msg = pipeline - else: - # TODO: color would be nice here, but breaks rich panel spacing - # name = typer.style(closest, fg=typer.colors.RED) - msg = f"{pipeline}\n A similar pipeline exists: {closest}" - raise typer.BadParameter(msg, param_hint="pipeline") - - return pipelines - - -# ------------------------- Type aliases ------------------------- # - -DatasetArg: TypeAlias = Annotated[ - list[str], - typer.Argument( - help="The dataset(s) to use", - autocompletion=complete_dataset, - callback=validate_datasets, - show_default=False, - ), -] - -DatasetOpt: TypeAlias = Annotated[ - Optional[list[str]], - typer.Option( - "--datasets", - "-d", - help="The dataset(s) to use", - autocompletion=complete_dataset, - callback=validate_datasets, - rich_help_panel="Manual options", - show_default=False, - ), -] - -PipelineArg: TypeAlias = Annotated[ - list[str], - typer.Argument( - help="The pipeline(s) to use", - autocompletion=complete_pipeline, - callback=validate_pipelines, - show_default=False, - ), -] - -PipelineOpt: TypeAlias = Annotated[ - Optional[list[str]], - typer.Option( - "--pipelines", - "-p", - help="The pipeline(s) to use", - autocompletion=complete_pipeline, - callback=validate_pipelines, - rich_help_panel="Manual options", - show_default=False, - ), -] diff --git a/python/evalio/cli/dataset_manager.py b/python/evalio/cli/dataset_manager.py index 3e3643e3..88fe4ed3 100644 --- a/python/evalio/cli/dataset_manager.py +++ b/python/evalio/cli/dataset_manager.py @@ -1,52 +1,58 @@ import shutil from pathlib import Path -from typing import Annotated, cast +from typing import Annotated, cast, TypeAlias -import typer +from cyclopts import Parameter from rosbags.interfaces import Connection, ConnectionExtRosbag2 -from rosbags.rosbag1 import ( - Reader as Reader1, -) -from rosbags.rosbag1 import ( - Writer as Writer1, -) -from rosbags.rosbag2 import ( - Reader as Reader2, -) -from rosbags.rosbag2 import ( - StoragePlugin, -) -from rosbags.rosbag2 import ( - Writer as Writer2, -) +from rosbags.rosbag1 import Reader as Reader1 +from rosbags.rosbag1 import Writer as Writer1 +from rosbags.rosbag2 import Reader as Reader2 +from rosbags.rosbag2 import StoragePlugin +from rosbags.rosbag2 import Writer as Writer2 from rosbags.typesys import Stores, get_typestore import evalio.datasets as ds from evalio.utils import print_warning -from .completions import DatasetArg +from .types import DataSeq, data_sequence_converter -app = typer.Typer() +DatasetArg: TypeAlias = Annotated[ + list[DataSeq], Parameter(converter=data_sequence_converter) +] +ForceAnnotation = Annotated[ + bool, Parameter(name=["--yes", "-y"], negative="", show_default=False) +] -def parse_datasets( - datasets: DatasetArg, -) -> list[ds.Dataset]: + +def confirm_check() -> bool: + """ + Check if --confirm is used, if not ask for confirmation. + """ + print("Are you sure you want to continue? This is a destructive operation. [y/N]") + response = input().strip().lower() + return response == "y" + + +def parse_datasets(datasets: DatasetArg) -> list[ds.Dataset]: """ Parse datasets from command line argument """ # parse all datasets valid_datasets = ds.parse_config(datasets) + # NOTE: Should this never fail since we pre-validate before this if isinstance(valid_datasets, ds.DatasetConfigError): print_warning(f"Error parsing datasets: {valid_datasets}") return [] return [b[0] for b in valid_datasets] -@app.command(no_args_is_help=True) -def dl(datasets: DatasetArg) -> None: +def dl(datasets: DatasetArg, /) -> None: """ Download datasets + + Args: + datasets (str): The dataset(s) to download. """ # parse all datasets valid_datasets = parse_datasets(datasets) @@ -78,27 +84,22 @@ def dl(datasets: DatasetArg) -> None: print(f"---------- Finished {dataset} ----------") -@app.command(no_args_is_help=True) -def rm( - datasets: DatasetArg, - force: Annotated[ - bool, - typer.Option( - "--force", - "-f", - prompt="Are you sure you want to delete these datasets?", - help="Force deletion without confirmation", - ), - ] = False, -): +def rm(datasets: DatasetArg, /, confirm: ForceAnnotation = False): """ Remove dataset(s) - If --force is not used, will ask for confirmation. + Args: + datasets (str): The dataset(s) to remove. + confirm (bool): Force, do not ask for confirmation. """ # parse all datasets to_remove = parse_datasets(datasets) + if not confirm: + if not confirm_check(): + print("Aborting") + return + print("Will remove:") for dataset in to_remove: print(f" {dataset}") @@ -214,25 +215,22 @@ def filter_ros2(bag: Path, topics: list[str]) -> None: bag_temp.rmdir() -@app.command(no_args_is_help=True) -def filter( - datasets: DatasetArg, - force: Annotated[ - bool, - typer.Option( - "--force", - "-f", - prompt="Are you sure you want to filter these datasets? This is slightly experimental, please make sure the data has a copy somewhere!", - help="Force deletion without confirmation", - ), - ] = False, -): +def filter(datasets: DatasetArg, /, confirm: ForceAnnotation = False): """ - Filter rosbag dataset(s) to only include lidar and imu data. Useful for shrinking disk size. + Filter rosbag dataset(s) to only include lidar and imu data. + + Args: + datasets (str): The dataset(s) to filter. + confirm (bool): Force, do not ask for confirmation. """ # parse all datasets valid_datasets = parse_datasets(datasets) + if not confirm: + if not confirm_check(): + print("Aborting") + return + # Check if already downloaded to_filter: list[ds.Dataset] = [] for dataset in valid_datasets: diff --git a/python/evalio/cli/ls.py b/python/evalio/cli/ls.py index ac896029..aa363b63 100644 --- a/python/evalio/cli/ls.py +++ b/python/evalio/cli/ls.py @@ -1,7 +1,6 @@ -from enum import StrEnum, auto from typing import Annotated, Literal, Optional, TypeVar, TypedDict -import typer +from cyclopts import Parameter from rapidfuzz.process import extract_iter from rich import box from rich.console import Console @@ -9,8 +8,6 @@ from evalio import datasets as ds, pipelines as pl -app = typer.Typer() - T = TypeVar("T") @@ -24,10 +21,10 @@ def unique(lst: list[T]) -> list[T]: def extract_len(d: ds.Dataset) -> str: - """Get the length of a dataset in a human readable format + """Get the temporal length of a dataset in a human readable format Args: - d (Dataset): Dataset to get length of + d (Dataset): Dataset Returns: Length of dataset in minutes or '-' if length is unknown @@ -39,54 +36,31 @@ def extract_len(d: ds.Dataset) -> str: return f"{length / d.lidar_params().rate / 60:.1f}min".rjust(7) -class Kind(StrEnum): - datasets = auto() - pipelines = auto() - - -@app.command(no_args_is_help=True) def ls( - kind: Annotated[ - Kind, typer.Argument(help="The kind of object to list", show_default=False) - ], - search: Annotated[ - Optional[str], - typer.Option( - "--search", - "-s", - help="Fuzzy search for a pipeline or dataset by name", - show_default=False, - ), - ] = None, - quiet: Annotated[ - bool, - typer.Option( - "--quiet", - "-q", - help="Output less verbose information", - ), - ] = False, - show_hyperlinks: Annotated[ - bool, - typer.Option( - "--show-hyperlinks", - help="Output full links. For terminals that don't support hyperlinks (OSC 8).", - ), - ] = False, - show: Annotated[ - bool, - typer.Option( - hidden=True, - ), - ] = True, + kind: Literal["datasets", "pipelines"], + /, + search: Annotated[Optional[str], Parameter(alias="-s")] = None, + quiet: Annotated[bool, Parameter(alias="-q")] = False, + show_hyperlinks: bool = False, + show: Annotated[bool, Parameter(show=False)] = True, ) -> Optional[Table]: """ - List dataset and pipeline information + Lists datasets and pipelines information. + + Args: + kind (Kind): The kind of object to list. + search (Optional[str], optional): Fuzzy search for a pipeline or dataset by name. + quiet (bool, optional): Output less verbose information. + show_hyperlinks (bool, optional): Output full links. For terminals that don't support hyperlinks (OSC 8). + show (bool, optional): Whether to display the table in the console. + + Returns: + Optional[Table]: A rich Table object containing the listed information, or None if no results are found. """ ColOpts = TypedDict("ColOpts", {"vertical": Literal["top", "middle", "bottom"]}) col_opts: ColOpts = {"vertical": "middle"} - if kind == Kind.datasets: + if kind == "datasets": # Search for datasets using rapidfuzz # TODO: Make it search through sequences as well? all_datasets = list(ds.all_datasets().values()) @@ -204,7 +178,7 @@ def ls( return table - if kind == Kind.pipelines: + if kind == "pipelines": # Search for pipelines using rapidfuzz # TODO: Make it search through parameters as well? all_pipelines = list(pl.all_pipelines().values()) diff --git a/python/evalio/cli/run.py b/python/evalio/cli/run.py index 5dd39199..fa7b42fe 100644 --- a/python/evalio/cli/run.py +++ b/python/evalio/cli/run.py @@ -1,114 +1,102 @@ import multiprocessing from pathlib import Path -from evalio._cpp.types import VisOption # type: ignore -from evalio.cli.completions import DatasetOpt, PipelineOpt -from evalio.types.base import Trajectory +from cyclopts import Group, Token, ValidationError +from cyclopts import Parameter +from evalio.cli.types import ( + DataSeq, + Pipeline, + data_sequence_converter, + pipeline_converter, +) +from evalio.types import Trajectory from evalio.utils import print_warning from tqdm.rich import tqdm import yaml from evalio import datasets as ds, pipelines as pl, types as ty from evalio.rerun import RerunVis - -# from .stats import evaluate +from evalio._cpp.types import VisOption # type: ignore from rich import print -from typing import Optional, Annotated -import typer +from typing import TYPE_CHECKING, Literal, Optional, Sequence, Annotated from time import time +if TYPE_CHECKING: + VisStr = str +else: + # Use literal instead of enum for cyclopts to parse as value instead of name + VisStr = Literal[(tuple(v.__name__[0].lower() for v in VisOption))] + -app = typer.Typer() +def opt2vis(opt: VisStr) -> VisOption: + map = {v.__name__[0].lower(): v for v in VisOption} + return map[opt] -def parse_vis(opts: str) -> set[VisOption]: - out = set[VisOption]() - for o in opts: - match o: - case "m": - out.add(VisOption.MAP) - case "i": - out.add(VisOption.IMAGE) - case "s": - out.add(VisOption.SCAN) - case "f": - out.add(VisOption.FEATURES) - case _: - raise typer.BadParameter(f"Unknown visualization option {o}") +def vis_convert(type_: type, tokens: Sequence[Token]) -> Optional[list[str]]: + """Custom converter to split strings into individual characters.""" + out: list[str] = [] + options = [v.__name__[0].lower() for v in VisOption] + for t in tokens: + if t.value in options: + out.append(t.value) + elif len(t.value) > 1: + for c in t.value: + if c in options: + out.append(c) return out -@app.command(no_args_is_help=True, name="run", help="Run pipelines on datasets") +# shorten things for annotation +Ann = Annotated +Opt = Optional +Par = Parameter +pc = pipeline_converter +dc = data_sequence_converter + +# groups +cg = Group("Config", sort_key=0) +mg = Group("Manual", sort_key=1) +og = Group("Misc", sort_key=2) + + def run_from_cli( + *, # Config file - config: Annotated[ - Optional[Path], - typer.Option( - "-c", - "--config", - help="Config file to load from", - rich_help_panel="From config", - show_default=False, - ), - ] = None, + config: Ann[Opt[Path], Par(alias="-c", group=cg)] = None, # Manual options - in_datasets: DatasetOpt = None, - in_pipelines: PipelineOpt = None, - in_out: Annotated[ - Optional[Path], - typer.Option( - "-o", - "--output", - help="Output directory to save results", - rich_help_panel="Manual options", - show_default=False, - ), - ] = None, + datasets: Ann[Opt[list[DataSeq]], Par(alias="-d", group=mg, converter=dc)] = None, + pipelines: Ann[Opt[list[Pipeline]], Par(alias="-p", group=mg, converter=pc)] = None, + out: Ann[Opt[Path], Par(alias="-o", group=mg)] = None, + length: Ann[Opt[int], Par(alias="-l", group=mg)] = None, # misc options - length: Annotated[ - Optional[int], - typer.Option( - "-l", - "--length", - help="Number of scans to process for each dataset", - rich_help_panel="Manual options", - show_default=False, - ), - ] = None, - visualize: Annotated[ - bool, - typer.Option( - "-v", - "--visualize", - help="Visualize the results via rerun", - show_default=False, - ), - ] = False, - show: Annotated[ - Optional[set[VisOption]], - typer.Option( - "-s", - "--show", - help="Show visualization options (m: map, i: image, s: scan, f: features). Automatically implies -v.", - show_default=False, - parser=parse_vis, + rerun_failed: Ann[bool, Par(group=og)] = False, + visualize: Ann[ + Opt[list[VisStr]], + Par( + alias="-v", + group=og, + consume_multiple=True, + converter=vis_convert, ), ] = None, - rerun_failed: Annotated[ - bool, - typer.Option( - "--rerun-failed", - help="Rerun failed experiments. If not set, will skip previously failed experiments.", - show_default=False, - ), - ] = False, ): - if (in_pipelines or in_datasets or length) and config: - raise typer.BadParameter( - "Cannot specify both config and manual options", param_hint="run" - ) + """Run lidar-inertial odometry experiments. + + Args: + config (Path): Path to the config file. + datasets (Dataset): Input datasets. May be repeated. + pipelines (Pipeline): Input pipelines. May be repeated. + out (Path): Output directory to save results. + length (int): Number of scans to process for each dataset. + visualize (list[VisOptions]): Visualization options. If just '-v', will show trajectory. Add more via '-v misf' (m: map, i: image, s: scan, f: features). + rerun_failed (bool): Rerun failed experiments. By default, failed experiments are skipped. + """ + + if (pipelines or datasets or length) and config: + raise ValueError("Cannot specify both config and manual options") # ------------------------- Parse Config file ------------------------- # if config is not None: @@ -125,18 +113,14 @@ def run_from_cli( params = yaml.load(f, Loader=Loader) if "datasets" not in params: - raise typer.BadParameter( - "No datasets specified in config", param_hint="run" - ) + raise ValueError("No datasets specified in config") if "pipelines" not in params: - raise typer.BadParameter( - "No pipelines specified in config", param_hint="run" - ) + raise ValueError("No pipelines specified in config") - datasets = ds.parse_config(params.get("datasets", None)) - pipelines = pl.parse_config(params.get("pipelines", None)) + run_datasets = ds.parse_config(params.get("datasets", None)) + run_pipelines = pl.parse_config(params.get("pipelines", None)) - out = ( + run_out = ( params["output_dir"] if "output_dir" in params else Path("./evalio_results") / config.stem @@ -144,80 +128,66 @@ def run_from_cli( # ------------------------- Parse manual options ------------------------- # else: - if in_pipelines is None: - raise typer.BadParameter( - "Must specify at least one pipeline", param_hint="run" - ) - if in_datasets is None: - raise typer.BadParameter( - "Must specify at least one dataset", param_hint="run" - ) + if pipelines is None: + raise ValueError("Must specify at least one pipeline") + if datasets is None: + raise ValidationError(msg="Must specify at least one dataset") if length is not None: temp_datasets: list[ds.DatasetConfig] = [ - {"name": d, "length": length} for d in in_datasets + {"name": d, "length": length} for d in datasets ] else: - temp_datasets = [{"name": d} for d in in_datasets] + temp_datasets = [{"name": d} for d in datasets] - pipelines = pl.parse_config(in_pipelines) - datasets = ds.parse_config(temp_datasets) + run_pipelines = pl.parse_config(pipelines) + run_datasets = ds.parse_config(temp_datasets) - if in_out is None: + if out is None: print_warning("Output directory not set. Defaulting to './evalio_results'") - out = Path("./evalio_results") + run_out = Path("./evalio_results") else: - out = in_out + run_out = out # ------------------------- Miscellaneous ------------------------- # # error out if either is wrong - if isinstance(datasets, ds.DatasetConfigError): - raise typer.BadParameter( - f"Error in datasets config: {datasets}", param_hint="run" - ) - if isinstance(pipelines, pl.PipelineConfigError): - raise typer.BadParameter( - f"Error in pipelines config: {pipelines}", param_hint="run" - ) - - if out.suffix == ".csv" and (len(pipelines) > 1 or len(datasets) > 1): - raise typer.BadParameter( - "Output must be a directory when running multiple experiments", - param_hint="run", - ) + if isinstance(run_datasets, ds.DatasetConfigError): + raise ValueError(f"Error in datasets config: {run_datasets}") + if isinstance(run_pipelines, pl.PipelineConfigError): + raise ValueError(f"Error in pipelines config: {run_pipelines}") # make sure all datasets are downloaded - for d, _ in datasets: + for d, _ in run_datasets: d._fail_not_downloaded() # parse all of the lengths - datasets = [ - (s, len(s) if length is None else min(len(s), length)) for s, length in datasets + run_datasets = [ + (s, len(s) if length is None else min(len(s), length)) + for s, length in run_datasets ] + if run_out.suffix == ".csv" and (len(run_pipelines) > 1 or len(run_datasets) > 1): + raise ValueError("Output must be a directory when running multiple experiments") + print( - f"Running {plural(len(datasets), 'dataset')} => {plural(len(pipelines) * len(datasets), 'experiment')}" + f"Running {plural(len(run_datasets), 'dataset')} => {plural(len(run_pipelines) * len(run_datasets), 'experiment')}" ) - dtime = sum(le / d.lidar_params().rate for d, le in datasets) - dtime *= len(pipelines) + dtime = sum(le / d.lidar_params().rate for d, le in run_datasets) + dtime *= len(run_pipelines) if dtime > 3600: print(f"Estimated time (if real-time): {dtime / 3600:.2f} hours") elif dtime > 60: print(f"Estimated time (if real-time): {dtime / 60:.2f} minutes") else: print(f"Estimated time (if real-time): {dtime:.2f} seconds") - print(f"Output will be saved to {out}\n") + print(f"Output will be saved to {run_out}\n") # Go through visualization options - vis_args: Optional[set[VisOption]] - if show is None: - if visualize: - vis_args = set() - else: - vis_args = None - else: - vis_args = show - vis = RerunVis(vis_args, [p[0] for p in pipelines]) + vis_args = None + if visualize is not None: + vis_args = set(opt2vis(v) for v in visualize) + + vis = RerunVis(vis_args, [p[0] for p in run_pipelines]) # save_config(pipelines, datasets, out) @@ -230,10 +200,10 @@ def run_from_cli( pipeline=pipeline, pipeline_version=pipeline.version(), pipeline_params=params, - file=out / sequence.full_name / f"{name}.csv", + file=run_out / sequence.full_name / f"{name}.csv", ) - for sequence, length in datasets - for name, pipeline, params in pipelines + for sequence, length in run_datasets + for name, pipeline, params in run_pipelines ] run(experiments, vis, rerun_failed) diff --git a/python/evalio/cli/stats.py b/python/evalio/cli/stats.py index ae7f7560..cff3141a 100644 --- a/python/evalio/cli/stats.py +++ b/python/evalio/cli/stats.py @@ -1,23 +1,19 @@ from pathlib import Path from typing import Annotated, Any, Callable, Optional, cast -from evalio.types.base import Trajectory import polars as pl import itertools +from evalio import types as ty, stats from evalio.utils import print_warning from rich.table import Table from rich.console import Console from rich import box -from evalio import types as ty, stats -import typer - import distinctipy from joblib import Parallel, delayed - -app = typer.Typer() +from cyclopts import Group, Parameter def eval_dataset( @@ -88,7 +84,7 @@ def eval_dataset( if len(traj) > 0: # align to ground truth, copying ground truth by hand - gt_aligned = Trajectory( + gt_aligned = ty.Trajectory( stamps=[ty.Stamp(s) for s in gt_og.stamps], poses=[ty.SE3(p) for p in gt_og.poses], ) @@ -165,129 +161,60 @@ def evaluate( return list(itertools.chain.from_iterable(results)) -@app.command("stats", no_args_is_help=True) -def evaluate_typer( - directories: Annotated[ - list[Path], typer.Argument(help="Directory of results to evaluate.") - ], - visualize: Annotated[ - bool, typer.Option("--visualize", "-v", help="Visualize results.") - ] = False, - # output options - sort: Annotated[ - Optional[str], - typer.Option( - "-S", - "--sort", - help="Sort results by the name of a column. Defaults to RTEt.", - rich_help_panel="Output options", - ), - ] = None, - reverse: Annotated[ - bool, - typer.Option( - "--reverse", - "-r", - help="Reverse the sorting order. Defaults to False.", - rich_help_panel="Output options", - ), - ] = False, +fg = Group("Filtering", sort_key=1) +mg = Group("Metric", sort_key=2) +og = Group("Output", sort_key=3) + +Ann = Annotated +Opt = Optional +Par = Parameter + + +def evaluate_cli( + directories: list[Path], + /, + *, # filtering options - filter_str: Annotated[ - Optional[str], - typer.Option( - "-f", - "--filter", - help="Python expressions to filter results rows. 'True' rows will be kept. Example: --filter 'RTEt < 0.5'", - rich_help_panel="Filtering options", - ), - ] = None, - only_complete: Annotated[ - bool, - typer.Option( - "--only-complete", - help="Only show results for trajectories that completed.", - rich_help_panel="Filtering options", - ), - ] = False, - only_failed: Annotated[ - bool, - typer.Option( - "--only-failed", - help="Only show results for trajectories that failed.", - rich_help_panel="Filtering options", - ), - ] = False, - hide_columns: Annotated[ - Optional[list[str]], - typer.Option( - "-h", - "--hide", - help="Columns to hide, may be repeated.", - rich_help_panel="Output options", - ), - ] = None, - show_columns: Annotated[ - Optional[list[str]], - typer.Option( - "-s", - "--show", - help="Columns to force show, may be repeated.", - rich_help_panel="Output options", - ), - ] = None, - print_columns: Annotated[ - bool, - typer.Option( - "--print-columns", - help="Print the names of all available columns.", - rich_help_panel="Output options", - ), - ] = False, + filter_str: Ann[Optional[str], Par(alias="-f", group=fg)] = None, + only_complete: Ann[bool, Par(group=fg)] = False, + only_failed: Ann[bool, Par(group=fg)] = False, # metric options - w_meters: Annotated[ - Optional[list[float]], - typer.Option( - "--w-meters", - help="Window size in meters for RTE computation. May be repeated. Defaults to 30m.", - rich_help_panel="Metric options", - ), - ] = None, - w_seconds: Annotated[ - Optional[list[float]], - typer.Option( - "--w-seconds", - help="Window size in seconds for RTE computation. May be repeated. Defaults to none.", - rich_help_panel="Metric options", - ), - ] = None, - metric: Annotated[ - stats.MetricKind, - typer.Option( - "--metric", - help="Metric to use for ATE/RTE computation. Defaults to sse.", - rich_help_panel="Metric options", - ), - ] = stats.MetricKind.sse, - length: Annotated[ - Optional[int], - typer.Option( - "-l", - "--length", - help="Specify subset of trajectory to evaluate.", - rich_help_panel="Metric options", - ), + w_meters: Ann[Optional[list[float]], Par(group=mg)] = None, + w_seconds: Ann[Optional[list[float]], Par(group=mg)] = None, + metric: Ann[stats.MetricKind, Par(alias="-m", group=mg)] = stats.MetricKind.sse, + length: Ann[Optional[int], Par(alias="-l", group=mg)] = None, + # output options + sort: Ann[Optional[str], Par(alias="-s", group=og)] = None, + reverse: Ann[bool, Par(alias="-r", group=og)] = False, + hide_columns: Ann[ + Optional[list[str]], Par(alias="-H", group=og, negative="") ] = None, + show_columns: Ann[Optional[list[str]], Par(alias="-S", group=og)] = None, + visualize: Ann[bool, Par(alias="-v", group=og)] = False, + print_columns: Ann[bool, Par(group=og)] = False, ) -> None: - """ - Evaluate the results of experiments. + """Evaluate experiment results and display statistics. + + Args: + directories (list[Path]): List of directories containing experiment results. + filter_str (str, optional): Python expression to filter result rows. Example: 'RTEt < 0.5'. + only_complete (bool, optional): Only show results for completed trajectories. + only_failed (bool, optional): Only show results for failed trajectories. + w_meters (list[float], optional): Window size in meters for RTE. May be repeated. Defaults to [30.0]. + w_seconds (list[float], optional): Window size in seconds for RTE. May be repeated. + metric (stats.MetricKind, optional): Metric to use for ATE/RTE computation. Defaults to sse. + length (int, optional): Specify subset of trajectory to evaluate. + sort (str, optional): Name of the column to sort results by. Defaults to first RTEt. + reverse (bool, optional): Reverse the sorting order. + hide_columns (list[str], optional): Columns to hide from output. May be repeated. + show_columns (list[str], optional): Columns to force show in output. May be repeated. + visualize (bool, optional): Visualize resulting trajectories in rerun. + print_columns (bool, optional): Print the names of all available columns and exit. """ # ------------------------- Process all inputs ------------------------- # # Parse some of the options if only_complete and only_failed: - raise typer.BadParameter( - "Can only use one of --only-complete, --only-incomplete, or --only-failed." - ) + raise ValueError("Can only use one of --only-complete and --only-failed.") # Parse the filtering options filter_method: Callable[[dict[str, Any]], bool] diff --git a/python/evalio/cli/types.py b/python/evalio/cli/types.py new file mode 100644 index 00000000..63478846 --- /dev/null +++ b/python/evalio/cli/types.py @@ -0,0 +1,52 @@ +from typing import TYPE_CHECKING, Literal, Sequence + +from cyclopts import Token +from evalio import datasets as ds, pipelines as pl + +from rapidfuzz.process import extractOne + +# ------------------------- Type aliases ------------------------- # +all_sequences = list(ds.all_sequences().keys()) +all_sequences.extend([d + "/*" for d in ds.all_datasets().keys()]) +all_pipelines = list(pl.all_pipelines().keys()) + +if TYPE_CHECKING: + DataSeq = str + Pipeline = str +else: + DataSeq = Literal[tuple(all_sequences)] + Pipeline = Literal[tuple(all_pipelines)] + + +# This is really a validator, but I want to shortcut the built-in Literal validation +def data_sequence_converter(type_: type, value: Sequence[Token]) -> list[str]: + for v in value: + if v.value not in ds.all_sequences(): + # closest, score, _idx + out = extractOne(v.value, ds.all_sequences().keys()) + if out is None or out[1] < 80: + msg = v.value + else: + msg = f"{v.value}\nA similar seq exists: {out[0]}" + + if v.keyword is None: + msg = f"Invalid data sequence: {msg}" + + raise ValueError(msg) + + return [t.value for t in value] + + +def pipeline_converter(type_: type, value: Sequence[Token]) -> list[str]: + for v in value: + if v.value not in pl.all_pipelines(): + # closest, score, _idx + out = extractOne(v.value, pl.all_pipelines().keys()) + if out is None or out[1] < 80: + msg = v.value + else: + msg = f"{v.value}\nA similar pipeline exists: {out[0]}" + + raise ValueError(f"Invalid pipeline: {msg}") + + return [t.value for t in value] diff --git a/python/evalio/datasets/base.py b/python/evalio/datasets/base.py index 24d0628d..157aed38 100644 --- a/python/evalio/datasets/base.py +++ b/python/evalio/datasets/base.py @@ -241,7 +241,7 @@ def _warn_default_dir(cls): global _DATA_DIR, _WARNED if not _WARNED and _DATA_DIR == Path("./evalio_data"): print_warning( - "Using default './evalio_data' for base data directory. Override by setting [magenta]EVALIO_DATA[/magenta], [magenta]evalio.set_data_dir(path)[/magenta] in python, or [magenta]-D[/magenta] in the CLI." + "Using default './evalio_data' for base data directory. Override by setting [magenta]EVALIO_DATA[/magenta], [magenta]evalio.set_DATA_DIR(path)[/magenta] in python, or [magenta]-D[/magenta] in the CLI." ) _WARNED = True diff --git a/python/evalio/stats.py b/python/evalio/stats.py index d681ffe7..957da5ee 100644 --- a/python/evalio/stats.py +++ b/python/evalio/stats.py @@ -345,7 +345,6 @@ def rte( window_deltas_poses.append(traj.poses[i].inverse() * traj.poses[end_idx]) window_deltas_gts.append(gt.poses[i].inverse() * gt.poses[end_idx]) - elif isinstance(window, WindowMeters): # Compute deltas for all of ground truth poses dist = np.zeros(len_gt) diff --git a/tests/test_cli_data.py b/tests/test_cli_data.py index 1f067a67..4dec1da0 100644 --- a/tests/test_cli_data.py +++ b/tests/test_cli_data.py @@ -1,7 +1,7 @@ from enum import auto from pathlib import Path from typing import Sequence -from evalio.cli.dataset_manager import dl, rm +from evalio.cli import app from evalio import datasets as ds, types as ty import pytest @@ -50,10 +50,11 @@ def url() -> str: ds.register_dataset(FakeData) +app.result_action = "return_value" def test_dl_done(capsys: pytest.CaptureFixture[str]) -> None: - dl(["fake_data/downloaded"]) + app.meta(["dl", "fake_data/downloaded"]) captured = capsys.readouterr() expected = """ @@ -64,7 +65,7 @@ def test_dl_done(capsys: pytest.CaptureFixture[str]) -> None: def test_dl_not_done(capsys: pytest.CaptureFixture[str]) -> None: - dl(["fake_data/not_downloaded"]) + app.meta(["dl", "fake_data/not_downloaded"]) captured = capsys.readouterr() expected = """ @@ -78,7 +79,7 @@ def test_dl_not_done(capsys: pytest.CaptureFixture[str]) -> None: def test_rm_done(capsys: pytest.CaptureFixture[str]) -> None: - rm(["fake_data/downloaded"]) + app.meta(["rm", "fake_data/downloaded", "-y"]) captured = capsys.readouterr() expected = f""" @@ -93,7 +94,7 @@ def test_rm_done(capsys: pytest.CaptureFixture[str]) -> None: def test_rm_not_done(capsys: pytest.CaptureFixture[str]) -> None: - rm(["fake_data/not_downloaded"]) + app.meta(["rm", "fake_data/not_downloaded", "-y"]) captured = capsys.readouterr() expected = f""" diff --git a/tests/test_cli_ls.py b/tests/test_cli_ls.py index 161f357e..bea58f2e 100644 --- a/tests/test_cli_ls.py +++ b/tests/test_cli_ls.py @@ -1,6 +1,6 @@ -from evalio.cli.ls import Kind, ls +from evalio.cli.ls import ls -def test_ls_pipelines(): - ls(Kind.datasets) - ls(Kind.pipelines) +def test_ls(): + ls("datasets") + ls("pipelines") diff --git a/uv.lock b/uv.lock index 7889ef17..67671cbc 100644 --- a/uv.lock +++ b/uv.lock @@ -8,11 +8,11 @@ resolution-markers = [ [[package]] name = "asteval" -version = "1.0.6" +version = "1.0.7" source = { registry = "https://pypi.org/simple" } -sdist = { url = "https://files.pythonhosted.org/packages/2b/f0/ad92c4bc565918713f9a4b54f06d06ec370e48079fdb50cf432befabee8b/asteval-1.0.6.tar.gz", hash = "sha256:1aa8e7304b2e171a90d64dd269b648cacac4e46fe5de54ac0db24776c0c4a19f", size = 52079, upload-time = "2025-01-19T21:44:03.291Z" } +sdist = { url = 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