cli.log

Building with Runestone 6.5.4
---> runestone.build
git describe --long
fatal: detected dubious ownership in repository at '/srv/web2py/applications/runestone/books/PDCBeginners'
To add an exception for this directory, call:

	git config --global --add safe.directory /srv/web2py/applications/runestone/books/PDCBeginners

Building into  ./build/PDCBeginners
mkdir_p path('././build/PDCBeginners')
mkdir_p path('./build/PDCBeginners')
mkdir_p path('././build/PDCBeginners/doctrees')
sphinx-build -b html -d ././build/PDCBeginners/doctrees -c . -a -E -Alogin_required=false -Aloglevel=0 -Acourse_title=PDCBeginners -Apython3=true -Adburl=postgresql://runestone:runestone@db/runestone_dev -Adefault_ac_lang=cpp -Ajobe_server=http://localhost:4000 -Aproxy_uri_runs=/jobe/index.php/restapi/runs/ -Aproxy_uri_files=/jobe/index.php/restapi/files/ -Adownloads_enabled=false -Aenable_chatcodes=false -Aallow_pairs=false -Adynamic_pages=False -Ause_services=false -Abasecourse=PDCBeginners -Acourse_id=PDCBeginners -Aappname=runestone -Acourse_url=http:localhost -Arunestone_version=6.5.4 -Abuild_info=unknown ./_sources ./build/PDCBeginners
Running Sphinx v4.5.0
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reading sources... [ 71%] 4-cuda/toctree
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/srv/web2py/applications/runestone/books/PDCBeginners/_sources/6-furtherAvenues/jobe-testing.rst: WARNING: document isn't included in any toctree
Building with Runestone 6.5.4
---> runestone.build
git describe --long
fatal: detected dubious ownership in repository at '/srv/web2py/applications/runestone/books/PDCBeginners'
To add an exception for this directory, call:

	git config --global --add safe.directory /srv/web2py/applications/runestone/books/PDCBeginners

Building into  ./build/PDCBeginners
mkdir_p path('././build/PDCBeginners')
mkdir_p path('./build/PDCBeginners')
mkdir_p path('././build/PDCBeginners/doctrees')
sphinx-build -b html -d ././build/PDCBeginners/doctrees -c . -a -E -Alogin_required=false -Aloglevel=0 -Acourse_title=PDCBeginners -Apython3=true -Adburl=postgresql://runestone:runestone@db/runestone_dev -Adefault_ac_lang=cpp -Ajobe_server=http://localhost:4000 -Aproxy_uri_runs=/jobe/index.php/restapi/runs/ -Aproxy_uri_files=/jobe/index.php/restapi/files/ -Adownloads_enabled=false -Aenable_chatcodes=false -Aallow_pairs=false -Adynamic_pages=False -Ause_services=false -Abasecourse=PDCBeginners -Acourse_id=PDCBeginners -Aappname=runestone -Acourse_url=http:localhost -Arunestone_version=6.5.4 -Abuild_info=unknown ./_sources ./build/PDCBeginners
Running Sphinx v4.5.0
Connecting to DB
No custom CSS files
No custom js files
building [mo]: all of 0 po files
building [html]: all source files
updating environment: [new config] 121 added, 0 changed, 0 removed
Resetting questions
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reading sources... [  1%] 0-0-front_matter/contributing
reading sources... [  2%] 0-0-front_matter/copyright
reading sources... [  3%] 0-0-front_matter/preface
reading sources... [  4%] 0-0-front_matter/title
reading sources... [  4%] 0-0-front_matter/toctree
reading sources... [  5%] 0-introduction/0.computing
reading sources... [  6%] 0-introduction/1.hardware
reading sources... [  7%] 0-introduction/2.parallelComputing
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reading sources... [  9%] 0-introduction/4.strategies
reading sources... [  9%] 0-introduction/5.platforms
reading sources... [ 10%] 0-introduction/6.setup
reading sources... [ 11%] 0-introduction/toctree
reading sources... [ 12%] 1-sharedMemory/code/dd_omp2.cpp
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reading sources... [ 13%] 1-sharedMemory/code/dd_serial2.cpp
Converted as reST using the C++ lexer.
reading sources... [ 14%] 1-sharedMemory/code/dd_threads.cpp
Converted as reST using the C++ lexer.
reading sources... [ 14%] 1-sharedMemory/code/spmd.c
Converted as reST using the C lexer.
reading sources... [ 15%] 1-sharedMemory/drugdesign
reading sources... [ 16%] 1-sharedMemory/firststeps
reading sources... [ 17%] 1-sharedMemory/performance
reading sources... [ 18%] 1-sharedMemory/preliminaries
reading sources... [ 19%] 1-sharedMemory/racecond
reading sources... [ 19%] 1-sharedMemory/reduction
reading sources... [ 20%] 1-sharedMemory/toctree
reading sources... [ 21%] 2-messagePassing/code/mpi4py/00spmd.py
Converted as reST using the Python lexer.
reading sources... [ 22%] 2-messagePassing/code/mpi4py/01masterWorker.py
Converted as reST using the Python lexer.
reading sources... [ 23%] 2-messagePassing/code/mpi4py/04messagePassingDeadlock.py
Converted as reST using the Python lexer.
reading sources... [ 23%] 2-messagePassing/code/mpi4py/05messagePassing.py
Converted as reST using the Python lexer.
reading sources... [ 24%] 2-messagePassing/code/mpi4py/06messagePassing2.py
Converted as reST using the Python lexer.
reading sources... [ 25%] 2-messagePassing/code/mpi4py/07messagePassing3.py
Converted as reST using the Python lexer.
reading sources... [ 26%] 2-messagePassing/code/mpi4py/08broadcast.py
Converted as reST using the Python lexer.
reading sources... [ 27%] 2-messagePassing/code/mpi4py/09broadcastUserInput.py
Converted as reST using the Python lexer.
reading sources... [ 28%] 2-messagePassing/code/mpi4py/11broadcastList.py
Converted as reST using the Python lexer.
reading sources... [ 28%] 2-messagePassing/code/mpi4py/12reduction.py
Converted as reST using the Python lexer.
reading sources... [ 29%] 2-messagePassing/code/mpi4py/13reductionList.py
Converted as reST using the Python lexer.
reading sources... [ 30%] 2-messagePassing/code/mpi4py/16ScatterGather.py
Converted as reST using the Python lexer.
reading sources... [ 31%] 2-messagePassing/code/mpi4py/arrayAddition1.py
Converted as reST using the Python lexer.
reading sources... [ 32%] 2-messagePassing/code/mpi4py/arrayAddition2.py
Converted as reST using the Python lexer.
reading sources... [ 33%] 2-messagePassing/code/mpi4py/integration.py
Converted as reST using the Python lexer.
reading sources... [ 33%] 2-messagePassing/code/mpi4py/populateArray.py
Converted as reST using the Python lexer.
reading sources... [ 34%] 2-messagePassing/code/mpi4py/populateArrayGather.py
Converted as reST using the Python lexer.
reading sources... [ 35%] 2-messagePassing/code/mpi4py/sendReceive.py
Converted as reST using the Python lexer.
reading sources... [ 36%] 2-messagePassing/code/mpi4py/tryPopulateArray.py
Converted as reST using the Python lexer.
reading sources... [ 37%] 2-messagePassing/firststeps
reading sources... [ 38%] 2-messagePassing/forestfire
reading sources... [ 38%] 2-messagePassing/improve
reading sources... [ 39%] 2-messagePassing/performance
reading sources... [ 40%] 2-messagePassing/sendAndReceive
reading sources... [ 41%] 2-messagePassing/toctree
reading sources... [ 42%] 3-commonAlgorithms/code/gcd.py
Converted as reST using the Python lexer.
reading sources... [ 42%] 3-commonAlgorithms/code/gcdWithBlanks.py
Converted as reST using the Python lexer.
reading sources... [ 43%] 3-commonAlgorithms/code/gcdWithBlanksSerial.py
Converted as reST using the Python lexer.
reading sources... [ 44%] 3-commonAlgorithms/code/helloEx.py
Converted as reST using the Python lexer.
reading sources... [ 45%] 3-commonAlgorithms/code/queueEx.py
Converted as reST using the Python lexer.
reading sources... [ 46%] 3-commonAlgorithms/matmul
reading sources... [ 47%] 3-commonAlgorithms/selection
reading sources... [ 47%] 3-commonAlgorithms/sharedq
reading sources... [ 48%] 3-commonAlgorithms/sieve
reading sources... [ 49%] 3-commonAlgorithms/sorting
reading sources... [ 50%] 3-commonAlgorithms/toctree
reading sources... [ 51%] 4-cuda/1-gpu-device
reading sources... [ 52%] 4-cuda/2-cuda-model-dim3
reading sources... [ 52%] 4-cuda/3-cuda-thread-mapping
reading sources... [ 53%] 4-cuda/4-VectorAdd
reading sources... [ 54%] 4-cuda/5-VectorAddUM
reading sources... [ 55%] 4-cuda/6-VectorAddTiming
reading sources... [ 56%] 4-cuda/code/cuda/1-basics/1.1-device/Makefile
Converted as reST using the Makefile lexer.
reading sources... [ 57%] 4-cuda/code/cuda/1-basics/1.1-device/device_info.cu
Converted as reST using the CUDA lexer.
reading sources... [ 57%] 4-cuda/code/cuda/1-basics/1.2-dim3/Makefile
Converted as reST using the Makefile lexer.
reading sources... [ 58%] 4-cuda/code/cuda/1-basics/1.2-dim3/dim3Demo.cu
Converted as reST using the CUDA lexer.
reading sources... [ 59%] 4-cuda/code/cuda/1-basics/1.2-dim3/dim3Demo1D1D.cu
Converted as reST using the CUDA lexer.
reading sources... [ 60%] 4-cuda/code/cuda/1-basics/1.2-dim3/dim3Demo1D2D.cu
Converted as reST using the CUDA lexer.
reading sources... [ 61%] 4-cuda/code/cuda/1-basics/1.2-dim3/dim3Demo2D2D.cu
Converted as reST using the CUDA lexer.
reading sources... [ 61%] 4-cuda/code/cuda/1-basics/1.3-1DBlockPrint/Makefile
Converted as reST using the Makefile lexer.
reading sources... [ 62%] 4-cuda/code/cuda/1-basics/1.3-1DBlockPrint/print1Block.cu
Converted as reST using the CUDA lexer.
reading sources... [ 63%] 4-cuda/code/cuda/1-basics/1.3-1DBlockPrint/print2Blocks.cu
Converted as reST using the CUDA lexer.
reading sources... [ 64%] 4-cuda/code/cuda/1-basics/1.4-2DArrayMapping/Makefile
Converted as reST using the Makefile lexer.
reading sources... [ 65%] 4-cuda/code/cuda/1-basics/1.4-2DArrayMapping/printThreads-to-2DArray.cu
Converted as reST using the CUDA lexer.
reading sources... [ 66%] 4-cuda/code/cuda/2-vectorAdd/Makefile
Converted as reST using the Makefile lexer.
reading sources... [ 66%] 4-cuda/code/cuda/2-vectorAdd/vectorAdd.cu
Converted as reST using the CUDA lexer.
reading sources... [ 67%] 4-cuda/code/cuda/3-UMVectorAdd/Makefile
Converted as reST using the Makefile lexer.
reading sources... [ 68%] 4-cuda/code/cuda/3-UMVectorAdd/vectorAdd.cu
Converted as reST using the CUDA lexer.
reading sources... [ 69%] 4-cuda/code/cuda/4-UMVectorAdd-timing/Makefile
Converted as reST using the Makefile lexer.
reading sources... [ 70%] 4-cuda/code/cuda/4-UMVectorAdd-timing/vectorAdd.cu
Converted as reST using the CUDA lexer.
reading sources... [ 71%] 4-cuda/code/cuda/4-UMVectorAdd-timing/vectorAdd_cudaTiming.cu
Converted as reST using the CUDA lexer.
reading sources... [ 71%] 4-cuda/toctree
reading sources... [ 72%] 5-applications/ai-minimax
reading sources... [ 73%] 5-applications/code/minimal-ttt.c
Converted as reST using the C lexer.
reading sources... [ 74%] 5-applications/code/ttt-omp.c
Converted as reST using the C lexer.
reading sources... [ 75%] 5-applications/code/ttt-serial.c
Converted as reST using the C lexer.
reading sources... [ 76%] 5-applications/toctree
reading sources... [ 76%] 6-furtherAvenues/code/c/wcmapper.c
Converted as reST using the C lexer.
reading sources... [ 77%] 6-furtherAvenues/code/c/wcreducer.c
Converted as reST using the C lexer.
reading sources... [ 78%] 6-furtherAvenues/code/cpp/wcmapper.cpp
Converted as reST using the C++ lexer.
reading sources... [ 79%] 6-furtherAvenues/code/cpp/wcreducer.cpp
Converted as reST using the C++ lexer.
reading sources... [ 80%] 6-furtherAvenues/code/id-identity/idmapper.cpp
Converted as reST using the C++ lexer.
reading sources... [ 80%] 6-furtherAvenues/code/id-identity/idmapper.java
Converted as reST using the Java lexer.
reading sources... [ 81%] 6-furtherAvenues/code/id-identity/idmapper.py
Converted as reST using the Python lexer.
reading sources... [ 82%] 6-furtherAvenues/code/id-identity/idreducer.cpp
Converted as reST using the C++ lexer.
reading sources... [ 83%] 6-furtherAvenues/code/id-identity/idreducer.java
Converted as reST using the Java lexer.
reading sources... [ 84%] 6-furtherAvenues/code/id-identity/idreducer.py
Converted as reST using the Python lexer.
reading sources... [ 85%] 6-furtherAvenues/code/id-identity_rab/idmapper.cpp
Converted as reST using the C++ lexer.
reading sources... [ 85%] 6-furtherAvenues/code/id-identity_rab/idmapper.java
Converted as reST using the Java lexer.
reading sources... [ 86%] 6-furtherAvenues/code/id-identity_rab/idreducer.cpp
Converted as reST using the C++ lexer.
reading sources... [ 87%] 6-furtherAvenues/code/id-identity_rab/idreducer.java
Converted as reST using the Java lexer.
reading sources... [ 88%] 6-furtherAvenues/code/java/wcmapper.java
Converted as reST using the Java lexer.
reading sources... [ 89%] 6-furtherAvenues/code/java/wcreducer.java
Converted as reST using the Java lexer.
reading sources... [ 90%] 6-furtherAvenues/code/python3/concmapper.py
Converted as reST using the Python lexer.
reading sources... [ 90%] 6-furtherAvenues/code/python3/concreducer.py
Converted as reST using the Python lexer.
reading sources... [ 91%] 6-furtherAvenues/code/python3/idmapper.py
Converted as reST using the Python lexer.
reading sources... [ 92%] 6-furtherAvenues/code/python3/idreducer.py
Converted as reST using the Python lexer.
reading sources... [ 93%] 6-furtherAvenues/code/python3/indexmapper.py
Converted as reST using the Python lexer.
reading sources... [ 94%] 6-furtherAvenues/code/python3/indexreducer.py
Converted as reST using the Python lexer.
reading sources... [ 95%] 6-furtherAvenues/code/python3/wcmapper.py
Converted as reST using the Python lexer.
reading sources... [ 95%] 6-furtherAvenues/code/python3/wcreducer.py
Converted as reST using the Python lexer.
reading sources... [ 96%] 6-furtherAvenues/jobe-testing
reading sources... [ 97%] 6-furtherAvenues/mapreduce
reading sources... [ 98%] 6-furtherAvenues/other
reading sources... [ 99%] 6-furtherAvenues/toctree
reading sources... [100%] index

looking for now-outdated files... none found
pickling environment... done
checking consistency... done
preparing documents... done
writing output... [  0%] 0-0-front_matter/acknowledgements
writing output... [  1%] 0-0-front_matter/contributing
writing output... [  2%] 0-0-front_matter/copyright
writing output... [  3%] 0-0-front_matter/preface
writing output... [  4%] 0-0-front_matter/title
writing output... [  4%] 0-0-front_matter/toctree
writing output... [  5%] 0-introduction/0.computing
writing output... [  6%] 0-introduction/1.hardware
writing output... [  7%] 0-introduction/2.parallelComputing
writing output... [  8%] 0-introduction/3.performance
writing output... [  9%] 0-introduction/4.strategies
writing output... [  9%] 0-introduction/5.platforms
writing output... [ 10%] 0-introduction/6.setup
writing output... [ 11%] 0-introduction/toctree
writing output... [ 12%] 1-sharedMemory/code/dd_omp2.cpp
writing output... [ 13%] 1-sharedMemory/code/dd_serial2.cpp
writing output... [ 14%] 1-sharedMemory/code/dd_threads.cpp
writing output... [ 14%] 1-sharedMemory/code/spmd.c
writing output... [ 15%] 1-sharedMemory/drugdesign
writing output... [ 16%] 1-sharedMemory/firststeps
writing output... [ 17%] 1-sharedMemory/performance
writing output... [ 18%] 1-sharedMemory/preliminaries
writing output... [ 19%] 1-sharedMemory/racecond
writing output... [ 19%] 1-sharedMemory/reduction
writing output... [ 20%] 1-sharedMemory/toctree
writing output... [ 21%] 2-messagePassing/code/mpi4py/00spmd.py
writing output... [ 22%] 2-messagePassing/code/mpi4py/01masterWorker.py
writing output... [ 23%] 2-messagePassing/code/mpi4py/04messagePassingDeadlock.py
writing output... [ 23%] 2-messagePassing/code/mpi4py/05messagePassing.py
writing output... [ 24%] 2-messagePassing/code/mpi4py/06messagePassing2.py
writing output... [ 25%] 2-messagePassing/code/mpi4py/07messagePassing3.py
writing output... [ 26%] 2-messagePassing/code/mpi4py/08broadcast.py
writing output... [ 27%] 2-messagePassing/code/mpi4py/09broadcastUserInput.py
writing output... [ 28%] 2-messagePassing/code/mpi4py/11broadcastList.py
writing output... [ 28%] 2-messagePassing/code/mpi4py/12reduction.py
writing output... [ 29%] 2-messagePassing/code/mpi4py/13reductionList.py
writing output... [ 30%] 2-messagePassing/code/mpi4py/16ScatterGather.py
writing output... [ 31%] 2-messagePassing/code/mpi4py/arrayAddition1.py
writing output... [ 32%] 2-messagePassing/code/mpi4py/arrayAddition2.py
writing output... [ 33%] 2-messagePassing/code/mpi4py/integration.py
writing output... [ 33%] 2-messagePassing/code/mpi4py/populateArray.py
writing output... [ 34%] 2-messagePassing/code/mpi4py/populateArrayGather.py
writing output... [ 35%] 2-messagePassing/code/mpi4py/sendReceive.py
writing output... [ 36%] 2-messagePassing/code/mpi4py/tryPopulateArray.py
writing output... [ 37%] 2-messagePassing/firststeps
writing output... [ 38%] 2-messagePassing/forestfire
writing output... [ 38%] 2-messagePassing/improve
writing output... [ 39%] 2-messagePassing/performance
writing output... [ 40%] 2-messagePassing/sendAndReceive
writing output... [ 41%] 2-messagePassing/toctree
writing output... [ 42%] 3-commonAlgorithms/code/gcd.py
writing output... [ 42%] 3-commonAlgorithms/code/gcdWithBlanks.py
writing output... [ 43%] 3-commonAlgorithms/code/gcdWithBlanksSerial.py
writing output... [ 44%] 3-commonAlgorithms/code/helloEx.py
writing output... [ 45%] 3-commonAlgorithms/code/queueEx.py
writing output... [ 46%] 3-commonAlgorithms/matmul
writing output... [ 47%] 3-commonAlgorithms/selection
writing output... [ 47%] 3-commonAlgorithms/sharedq
writing output... [ 48%] 3-commonAlgorithms/sieve
writing output... [ 49%] 3-commonAlgorithms/sorting
writing output... [ 50%] 3-commonAlgorithms/toctree
writing output... [ 51%] 4-cuda/1-gpu-device
writing output... [ 52%] 4-cuda/2-cuda-model-dim3
writing output... [ 52%] 4-cuda/3-cuda-thread-mapping
writing output... [ 53%] 4-cuda/4-VectorAdd
writing output... [ 54%] 4-cuda/5-VectorAddUM
writing output... [ 55%] 4-cuda/6-VectorAddTiming
writing output... [ 56%] 4-cuda/code/cuda/1-basics/1.1-device/Makefile
writing output... [ 57%] 4-cuda/code/cuda/1-basics/1.1-device/device_info.cu
writing output... [ 57%] 4-cuda/code/cuda/1-basics/1.2-dim3/Makefile
writing output... [ 58%] 4-cuda/code/cuda/1-basics/1.2-dim3/dim3Demo.cu
writing output... [ 59%] 4-cuda/code/cuda/1-basics/1.2-dim3/dim3Demo1D1D.cu
writing output... [ 60%] 4-cuda/code/cuda/1-basics/1.2-dim3/dim3Demo1D2D.cu
writing output... [ 61%] 4-cuda/code/cuda/1-basics/1.2-dim3/dim3Demo2D2D.cu
writing output... [ 61%] 4-cuda/code/cuda/1-basics/1.3-1DBlockPrint/Makefile
writing output... [ 62%] 4-cuda/code/cuda/1-basics/1.3-1DBlockPrint/print1Block.cu
writing output... [ 63%] 4-cuda/code/cuda/1-basics/1.3-1DBlockPrint/print2Blocks.cu
writing output... [ 64%] 4-cuda/code/cuda/1-basics/1.4-2DArrayMapping/Makefile
writing output... [ 65%] 4-cuda/code/cuda/1-basics/1.4-2DArrayMapping/printThreads-to-2DArray.cu
writing output... [ 66%] 4-cuda/code/cuda/2-vectorAdd/Makefile
writing output... [ 66%] 4-cuda/code/cuda/2-vectorAdd/vectorAdd.cu
writing output... [ 67%] 4-cuda/code/cuda/3-UMVectorAdd/Makefile
writing output... [ 68%] 4-cuda/code/cuda/3-UMVectorAdd/vectorAdd.cu
writing output... [ 69%] 4-cuda/code/cuda/4-UMVectorAdd-timing/Makefile
writing output... [ 70%] 4-cuda/code/cuda/4-UMVectorAdd-timing/vectorAdd.cu
writing output... [ 71%] 4-cuda/code/cuda/4-UMVectorAdd-timing/vectorAdd_cudaTiming.cu
writing output... [ 71%] 4-cuda/toctree
writing output... [ 72%] 5-applications/ai-minimax
writing output... [ 73%] 5-applications/code/minimal-ttt.c
writing output... [ 74%] 5-applications/code/ttt-omp.c
writing output... [ 75%] 5-applications/code/ttt-serial.c
writing output... [ 76%] 5-applications/toctree
writing output... [ 76%] 6-furtherAvenues/code/c/wcmapper.c
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