Can this tool be used for spatial transcriptome data?

[xxbb23]

Hi CytoSig developers:

Thank you very much for your amazing tool!
I am currently analyzing spatial transcriptomics data and need to investigate the activity of a specific inflammatory factor within a particular region. Therefore, can Cytosig be used for spatial transcriptomics data analysis?
Thank you!

[data2intelligence]

Hi, xxbb23, Yes, you can summarize the spatial transcriptomics (ST) data as an input matrix to CytoSig. Then, you will get the output for each ST spot. Sincerely, Peng On Sep 21, 2025, at 1:46 AM, X-Chen ***@***.***> wrote:  [https://avatars.githubusercontent.com/u/99854587?s=20&v=4]xxbb23 created an issue (data2intelligence/CytoSig#20)<#20> Hi CytoSig developers: Thank you very much for your amazing tool! I am currently analyzing spatial transcriptomics data and need to investigate the activity of a specific inflammatory factor within a particular region. Therefore, can Cytosig be used for spatial transcriptomics data analysis? Thank you! — Reply to this email directly, view it on GitHub<#20>, or unsubscribe<https://github.com/notifications/unsubscribe-auth/AQRREFYUUTOJ7WPQP6ESSCT3TY3RVAVCNFSM6AAAAACHCKIRY6VHI2DSMVQWIX3LMV43ASLTON2WKOZTGQZTOOBUG44DEOI>. You are receiving this because you are subscribed to this thread.Message ID: ***@***.***> CAUTION: This email originated from outside of the organization. Do not click links or open attachments unless you recognize the sender and are confident the content is safe.