How to pass protein sequence as array of strings

[Zedonboy]

I have sequences in .csv file, how do i pass it to asap

[nadavbra]

Hi, You need to first convert the sequences to the .lf format. It is a very simple FASTA-like format. You can see examples here: https://github.com/ddofer/asap/tree/master/data/phosphoserine Also, I recommend you to look at our tutorial at: https://github.com/ddofer/asap/wiki/Getting-Started:-A-Basic-Tutorial Good luck! Nadav

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On Wed, Aug 8, 2018 at 9:38 PM Dan Ofer ***@***.***> wrote: Assigned #2 <#2> to @nadavbra <https://github.com/nadavbra>. — You are receiving this because you were assigned. Reply to this email directly, view it on GitHub <#2 (comment)>, or mute the thread <https://github.com/notifications/unsubscribe-auth/ANgN4YVpbTmlRh7_rlMlk_mOY3LO4cCMks5uOzAhgaJpZM4V0ZZt> .

[Zedonboy]

Did some googling the format is rare. I can't find any service that convert . Csv to lf

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On Thu, Aug 9, 2018, 2:41 PM nadavbra ***@***.***> wrote: Hi, You need to first convert the sequences to the .lf format. It is a very simple FASTA-like format. You can see examples here: https://github.com/ddofer/asap/tree/master/data/phosphoserine Also, I recommend you to look at our tutorial at: https://github.com/ddofer/asap/wiki/Getting-Started:-A-Basic-Tutorial Good luck! Nadav On Wed, Aug 8, 2018 at 9:38 PM Dan Ofer ***@***.***> wrote: > Assigned #2 <#2> to @nadavbra > <https://github.com/nadavbra>. > > — > You are receiving this because you were assigned. > Reply to this email directly, view it on GitHub > <#2 (comment)>, or mute the > thread > < https://github.com/notifications/unsubscribe-auth/ANgN4YVpbTmlRh7_rlMlk_mOY3LO4cCMks5uOzAhgaJpZM4V0ZZt > > . > — You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub <#2 (comment)>, or mute the thread <https://github.com/notifications/unsubscribe-auth/AVIoqE8JFd6s1zmDXw5N3n5uvibcD3KMks5uPDwRgaJpZM4V0ZZt> .

[nadavbra]

There is no automatic tool that does this conversion; you will have to write some code to do that. Fortunately, the format is super simple.

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On Thu, Aug 9, 2018 at 6:42 PM Zedonboy ***@***.***> wrote: Did some googling the format is rare. I can't find any service that convert . Csv to lf On Thu, Aug 9, 2018, 2:41 PM nadavbra ***@***.***> wrote: > Hi, > > You need to first convert the sequences to the .lf format. It is a very > simple FASTA-like format. You can see examples here: > https://github.com/ddofer/asap/tree/master/data/phosphoserine > > Also, I recommend you to look at our tutorial at: > https://github.com/ddofer/asap/wiki/Getting-Started:-A-Basic-Tutorial > > Good luck! > > Nadav > > On Wed, Aug 8, 2018 at 9:38 PM Dan Ofer ***@***.***> wrote: > > > Assigned #2 <#2> to @nadavbra > > <https://github.com/nadavbra>. > > > > — > > You are receiving this because you were assigned. > > Reply to this email directly, view it on GitHub > > <#2 (comment)>, or mute the > > thread > > < > https://github.com/notifications/unsubscribe-auth/ANgN4YVpbTmlRh7_rlMlk_mOY3LO4cCMks5uOzAhgaJpZM4V0ZZt > > > > . > > > > — > You are receiving this because you authored the thread. > Reply to this email directly, view it on GitHub > <#2 (comment)>, or mute > the thread > < https://github.com/notifications/unsubscribe-auth/AVIoqE8JFd6s1zmDXw5N3n5uvibcD3KMks5uPDwRgaJpZM4V0ZZt > > . > — You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub <#2 (comment)>, or mute the thread <https://github.com/notifications/unsubscribe-auth/ANgN4YjxP85fjHPqC-unS9C9TiO--woQks5uPFhbgaJpZM4V0ZZt> .