From 8e350dbcd9b8560b11f1e4a46cc01fb2a504e6e0 Mon Sep 17 00:00:00 2001 From: Josha Inglis Date: Wed, 29 Jun 2022 08:46:28 +1000 Subject: [PATCH 01/13] use forked schemainspect --- poetry.lock | 301 +++++++++++++++++++++++++------------------------ pyproject.toml | 3 +- 2 files changed, 156 insertions(+), 148 deletions(-) diff --git a/poetry.lock b/poetry.lock index 4afc7fe..ee8de09 100644 --- a/poetry.lock +++ b/poetry.lock @@ -22,7 +22,7 @@ tests_no_zope = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (> [[package]] name = "black" -version = "22.3.0" +version = "22.6.0" description = "The uncompromising code formatter." category = "dev" optional = false @@ -33,7 +33,7 @@ click = ">=8.0.0" mypy-extensions = ">=0.4.3" pathspec = ">=0.9.0" platformdirs = ">=2" -tomli = {version = ">=1.1.0", markers = "python_version < \"3.11\""} +tomli = {version = ">=1.1.0", markers = "python_full_version < \"3.11.0a7\""} typed-ast = {version = ">=1.4.2", markers = "python_version < \"3.8\" and implementation_name == \"cpython\""} typing-extensions = {version = ">=3.10.0.0", markers = "python_version < \"3.10\""} @@ -57,7 +57,7 @@ importlib-metadata = {version = "*", markers = "python_version < \"3.8\""} [[package]] name = "colorama" -version = "0.4.4" +version = "0.4.5" description = "Cross-platform colored terminal text." category = "dev" optional = false @@ -76,14 +76,14 @@ test = ["flake8 (==3.7.8)", "hypothesis (==3.55.3)"] [[package]] name = "coverage" -version = "6.3.2" +version = "6.4.1" description = "Code coverage measurement for Python" category = "dev" optional = false python-versions = ">=3.7" [package.dependencies] -tomli = {version = "*", optional = true, markers = "extra == \"toml\""} +tomli = {version = "*", optional = true, markers = "python_full_version <= \"3.11.0a6\" and extra == \"toml\""} [package.extras] toml = ["tomli"] @@ -263,7 +263,7 @@ python-versions = ">=3.6" [[package]] name = "pyparsing" -version = "3.0.8" +version = "3.0.9" description = "pyparsing module - Classes and methods to define and execute parsing grammars" category = "main" optional = false @@ -324,7 +324,7 @@ testing = ["fields", "hunter", "process-tests", "six", "pytest-xdist", "virtuale [[package]] name = "rich" -version = "12.4.0" +version = "12.4.4" description = "Render rich text, tables, progress bars, syntax highlighting, markdown and more to the terminal" category = "dev" optional = false @@ -340,15 +340,22 @@ jupyter = ["ipywidgets (>=7.5.1,<8.0.0)"] [[package]] name = "schemainspect" -version = "3.1.1652015119" +version = "3.1" description = "Schema inspection for PostgreSQL (and possibly others)" category = "main" optional = false python-versions = ">=3.7,<4" +develop = false [package.dependencies] sqlalchemy = "*" +[package.source] +type = "git" +url = "https://github.com/joshainglis/schemainspect.git" +reference = "6402a3aaa54c405b50c312c2369de0bf1c06dde5" +resolved_reference = "6402a3aaa54c405b50c312c2369de0bf1c06dde5" + 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16:51:16 +1000 Subject: [PATCH 03/13] handle comments and array dependencies --- migra/changes.py | 1 - migra/migra.py | 2 + poetry.lock | 1050 ++++++++++++++++++++++------------------------ pyproject.toml | 7 +- 4 files changed, 509 insertions(+), 551 deletions(-) diff --git a/migra/changes.py b/migra/changes.py index 406c5d9..0b7263f 100644 --- a/migra/changes.py +++ b/migra/changes.py @@ -365,7 +365,6 @@ def get_selectable_differences( not_replaceable = set() if add_dependents_for_modified: - for k, m in changed_all.items(): old = selectables_from[k] diff --git a/migra/migra.py b/migra/migra.py index 6034687..0729060 100644 --- a/migra/migra.py +++ b/migra/migra.py @@ -85,6 +85,7 @@ def add_extension_changes(self, creates=True, drops=True): self.add(self.changes.extensions(drops_only=True)) def add_all_changes(self, privileges=False): + self.add(self.changes.comments(drops_only=True)) self.add(self.changes.schemas(creations_only=True)) 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+lock-version = "2.0" +python-versions = ">=3.9,<4" +content-hash = "c1101b01a46081c35e7ff4e5b68d91b070c63c5d29761ece9528673219c8d4b5" diff --git a/pyproject.toml b/pyproject.toml index 01ac7bb..1b1091d 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -10,11 +10,12 @@ repository = "https://github.com/djrobstep/migra" homepage = "https://databaseci.com/docs/migra" [tool.poetry.dependencies] -python = ">=3.7,<4" +python = ">=3.9,<4" sqlbag = "*" six = "*" -schemainspect = { git = "https://github.com/joshainglis/schemainspect.git", rev = "b4ca84baa876fba2c4d7c6d096ed68fb1edff0b1" } -psycopg2-binary = { version="*", optional = true } +schemainspect = { git = "https://github.com/joshainglis/schemainspect.git", rev = "2df4dfdae65e2ab5ddfe9e2dc1d5037bed830220" } +#schemainspect = { path = "../schemainspect", develop = true } +psycopg2 = { version="*", optional = true } [tool.poetry.dev-dependencies] sqlbag = "*" From 13230fd54cce0e56298954bc2f8e9babd2bd91a1 Mon Sep 17 00:00:00 2001 From: Josha Inglis Date: Wed, 12 Apr 2023 17:25:46 +1000 Subject: [PATCH 04/13] fix comment --- poetry.lock | 6 +++--- pyproject.toml | 2 +- 2 files changed, 4 insertions(+), 4 deletions(-) diff --git a/poetry.lock b/poetry.lock index 1e6c1e4..bba4848 100644 --- a/poetry.lock +++ b/poetry.lock @@ -636,8 +636,8 @@ sqlalchemy = "*" [package.source] type = "git" url = "https://github.com/joshainglis/schemainspect.git" -reference = "2df4dfdae65e2ab5ddfe9e2dc1d5037bed830220" -resolved_reference = "2df4dfdae65e2ab5ddfe9e2dc1d5037bed830220" +reference = "a0bfc917070b4218cdc9656c49ff02d8f35dafb0" +resolved_reference = "a0bfc917070b4218cdc9656c49ff02d8f35dafb0" [[package]] name = "six" @@ -793,4 +793,4 @@ pg = [] [metadata] lock-version = "2.0" python-versions = ">=3.9,<4" -content-hash = "c1101b01a46081c35e7ff4e5b68d91b070c63c5d29761ece9528673219c8d4b5" +content-hash = "7897ccb04357010dbb13bacdf8116fcd4c9f78cde3e4495568d0d7b26c980f46" diff --git a/pyproject.toml b/pyproject.toml index 1b1091d..53f2444 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -13,7 +13,7 @@ homepage = "https://databaseci.com/docs/migra" python = ">=3.9,<4" sqlbag = "*" six = "*" -schemainspect = { git = "https://github.com/joshainglis/schemainspect.git", rev = "2df4dfdae65e2ab5ddfe9e2dc1d5037bed830220" } +schemainspect = { git = "https://github.com/joshainglis/schemainspect.git", rev = "a0bfc917070b4218cdc9656c49ff02d8f35dafb0" } #schemainspect = { path = "../schemainspect", develop = true } psycopg2 = { version="*", optional = true } From e2596fa0ee38551c15f7e769263e1a46eb963614 Mon Sep 17 00:00:00 2001 From: Josha Inglis Date: Wed, 12 Apr 2023 17:31:59 +1000 Subject: [PATCH 05/13] fix comment --- migra/changes.py | 10 ++++++++++ 1 file changed, 10 insertions(+) diff --git a/migra/changes.py b/migra/changes.py index 0b7263f..33b02c3 100644 --- a/migra/changes.py +++ b/migra/changes.py @@ -21,6 +21,7 @@ "collations", "rlspolicies", "triggers", + "comments", ] PK = "PRIMARY KEY" @@ -655,6 +656,15 @@ def sequences(self): modifications=False, ) + @property + def comments(self): + return partial( + statements_for_changes, + self.i_from.comments, + self.i_target.comments, + modifications=False, + ) + def __getattr__(self, name): if name in THINGS: return partial( From 4834c9020ff4466b9d2a9560e49015d3cad34138 Mon Sep 17 00:00:00 2001 From: Josha Inglis Date: Wed, 12 Apr 2023 20:22:21 +1000 Subject: [PATCH 06/13] use a topological sort when creating tables --- migra/changes.py | 24 +++++++++++++++++++----- poetry.lock | 25 ++++++++++++++++++++++--- pyproject.toml | 3 ++- 3 files changed, 43 insertions(+), 9 deletions(-) diff --git a/migra/changes.py b/migra/changes.py index 33b02c3..81c6697 100644 --- a/migra/changes.py +++ b/migra/changes.py @@ -3,6 +3,8 @@ from collections import OrderedDict as od from functools import partial +from networkx import lexicographical_topological_sort, DiGraph + import schemainspect from .statements import Statements @@ -228,11 +230,23 @@ def get_table_changes( statements += enums_pre - for t, v in added.items(): - statements.append(v.create_statement) - if v.rowsecurity: - rls_alter = v.alter_rls_statement - statements.append(rls_alter) + # topologial sort of tables using table.dependents + # this is to ensure that tables are created in the correct order + # so that foreign keys can be created + + G = DiGraph() + G.add_nodes_from(tables_target.keys()) + for t, v in tables_target.items(): + G.add_edges_from((t, d) for d in v.dependents) + + tables_sorted = {k: tables_target[k] for k in lexicographical_topological_sort(G) if k in tables_target} + + for t, v in tables_sorted.items(): + if t in added: + statements.append(v.create_statement) + if v.rowsecurity: + rls_alter = v.alter_rls_statement + statements.append(rls_alter) statements += enums_post diff --git a/poetry.lock b/poetry.lock index bba4848..a5d6a08 100644 --- a/poetry.lock +++ b/poetry.lock @@ -341,6 +341,25 @@ files = [ {file = "mypy_extensions-1.0.0.tar.gz", hash = "sha256:75dbf8955dc00442a438fc4d0666508a9a97b6bd41aa2f0ffe9d2f2725af0782"}, ] +[[package]] +name = "networkx" +version = "3.1" +description = "Python package for creating and manipulating graphs and networks" +category = "main" +optional = false +python-versions = ">=3.8" +files = [ + {file = "networkx-3.1-py3-none-any.whl", hash = "sha256:4f33f68cb2afcf86f28a45f43efc27a9386b535d567d2127f8f61d51dec58d36"}, + {file = "networkx-3.1.tar.gz", hash = "sha256:de346335408f84de0eada6ff9fafafff9bcda11f0a0dfaa931133debb146ab61"}, +] + +[package.extras] +default = ["matplotlib (>=3.4)", "numpy (>=1.20)", "pandas (>=1.3)", "scipy (>=1.8)"] +developer = ["mypy (>=1.1)", "pre-commit (>=3.2)"] +doc = ["nb2plots (>=0.6)", "numpydoc (>=1.5)", "pillow (>=9.4)", "pydata-sphinx-theme (>=0.13)", "sphinx (>=6.1)", "sphinx-gallery (>=0.12)", "texext (>=0.6.7)"] +extra = ["lxml (>=4.6)", "pydot (>=1.4.2)", "pygraphviz (>=1.10)", "sympy (>=1.10)"] +test = ["codecov (>=2.1)", "pytest (>=7.2)", "pytest-cov (>=4.0)"] + [[package]] name = "packaging" version = "23.0" @@ -636,8 +655,8 @@ sqlalchemy = "*" [package.source] type = "git" url = "https://github.com/joshainglis/schemainspect.git" -reference = "a0bfc917070b4218cdc9656c49ff02d8f35dafb0" -resolved_reference = "a0bfc917070b4218cdc9656c49ff02d8f35dafb0" +reference = "8fe1b389337537882f8aa983a297b5f3e188ee2f" +resolved_reference = "8fe1b389337537882f8aa983a297b5f3e188ee2f" [[package]] name = "six" @@ -793,4 +812,4 @@ pg = [] [metadata] lock-version = "2.0" python-versions = ">=3.9,<4" -content-hash = "7897ccb04357010dbb13bacdf8116fcd4c9f78cde3e4495568d0d7b26c980f46" +content-hash = "f71e6b118a86a1db12739cee6d2ca15a440e90d0f74dbb05fdf88fc9962ff075" diff --git a/pyproject.toml b/pyproject.toml index 53f2444..443fd52 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -13,9 +13,10 @@ homepage = "https://databaseci.com/docs/migra" python = ">=3.9,<4" sqlbag = "*" six = "*" -schemainspect = { git = "https://github.com/joshainglis/schemainspect.git", rev = "a0bfc917070b4218cdc9656c49ff02d8f35dafb0" } +schemainspect = { git = "https://github.com/joshainglis/schemainspect.git", rev = "8fe1b389337537882f8aa983a297b5f3e188ee2f" } #schemainspect = { path = "../schemainspect", develop = true } psycopg2 = { version="*", optional = true } +networkx = "^3.1" [tool.poetry.dev-dependencies] sqlbag = "*" From efe76d198669ebe864146d6e0acdd4a29d900c0a Mon Sep 17 00:00:00 2001 From: Josha Inglis Date: Wed, 12 Apr 2023 20:58:11 +1000 Subject: [PATCH 07/13] update schemainspect --- poetry.lock | 6 +++--- pyproject.toml | 2 +- 2 files changed, 4 insertions(+), 4 deletions(-) diff --git a/poetry.lock b/poetry.lock index a5d6a08..2bf6abb 100644 --- a/poetry.lock +++ b/poetry.lock @@ -655,8 +655,8 @@ sqlalchemy = "*" [package.source] type = "git" url = "https://github.com/joshainglis/schemainspect.git" -reference = "8fe1b389337537882f8aa983a297b5f3e188ee2f" -resolved_reference = "8fe1b389337537882f8aa983a297b5f3e188ee2f" +reference = "a434855feeb85411e2a8e7b231c72d404f3dddbd" +resolved_reference = "a434855feeb85411e2a8e7b231c72d404f3dddbd" [[package]] name = "six" @@ -812,4 +812,4 @@ pg = [] [metadata] lock-version = "2.0" python-versions = ">=3.9,<4" -content-hash = "f71e6b118a86a1db12739cee6d2ca15a440e90d0f74dbb05fdf88fc9962ff075" +content-hash = "e50ca218701fe4c4605462dfca3db87717407d75cc3fde424574a3cdd1337785" diff --git a/pyproject.toml b/pyproject.toml index 443fd52..7ca7eb8 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -13,7 +13,7 @@ homepage = "https://databaseci.com/docs/migra" python = ">=3.9,<4" sqlbag = "*" six = "*" -schemainspect = { git = "https://github.com/joshainglis/schemainspect.git", rev = "8fe1b389337537882f8aa983a297b5f3e188ee2f" } +schemainspect = { git = "https://github.com/joshainglis/schemainspect.git", rev = "a434855feeb85411e2a8e7b231c72d404f3dddbd" } #schemainspect = { path = "../schemainspect", develop = true } psycopg2 = { 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cb8078885cfe669aac820fe71beb6b48695327e5 Mon Sep 17 00:00:00 2001 From: Josha Inglis Date: Mon, 28 Aug 2023 11:32:09 +1000 Subject: [PATCH 09/13] Switch from psycopg2-binary to psycopg2 Updated pyproject.toml and poetry.lock files to switch from psycopg2-binary to psycopg2 for postgres database functionality. The psycopg2-binary package is a stand-alone package that's meant for easy installation purposes and not recommended for production environments. For production-ready functionality and better maintainability, we switched to psycopg2. 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return {k: v for k, v in d.items() if v.relationtype == "f"} + return {k: v for k, v in d.items() if v.relationtype in ("f", "a")} if not tables_only: if not creations_only: From eafe54578f3e845c185127012513f62c3a7fcf13 Mon Sep 17 00:00:00 2001 From: Josha Inglis Date: Thu, 7 Sep 2023 11:35:45 +1000 Subject: [PATCH 11/13] update schemainspect --- poetry.lock | 122 ++++++++++++++++++++++++------------------------- pyproject.toml | 2 +- 2 files changed, 62 insertions(+), 62 deletions(-) diff --git a/poetry.lock b/poetry.lock index 655f56f..0a81f10 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1,4 +1,4 @@ -# This file is automatically @generated by Poetry 1.5.1 and should not be changed by hand. +# This file is automatically @generated by Poetry 1.6.1 and should not be changed by hand. 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"*" +psycopg2-binary = "*" flake8 = "*" isort = "*" black = "*" @@ -33,7 +33,7 @@ toml = "*" migra = 'migra:do_command' [tool.poetry.extras] -pg = ["psycopg2"] +pg = ["psycopg2-binary"] [tool.isort] multi_line_output = 3 From 4b7b75e581af2c73ef4cd51b9bfecb503452d820 Mon Sep 17 00:00:00 2001 From: Josha Inglis Date: Tue, 14 May 2024 11:21:52 +1000 Subject: [PATCH 13/13] bump schemainspect --- poetry.lock | 6 +++--- pyproject.toml | 2 +- 2 files changed, 4 insertions(+), 4 deletions(-) diff --git a/poetry.lock b/poetry.lock index 7e1578a..e1dedb8 100644 --- a/poetry.lock +++ b/poetry.lock @@ -602,8 +602,8 @@ sqlalchemy = "*" [package.source] type = "git" url = "https://github.com/joshainglis/schemainspect.git" -reference = "79b3fbdb9c22252574578e8f83dcb7f85ebaf69a" -resolved_reference = "79b3fbdb9c22252574578e8f83dcb7f85ebaf69a" +reference = "eeda5c18d26fce006a826cfe63f8683b4490a321" +resolved_reference = "eeda5c18d26fce006a826cfe63f8683b4490a321" [[package]] name = "six" @@ -750,4 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