diff --git a/.circleci/config.yml b/.circleci/config.yml index 2fa0ae743..eaa266188 100644 --- a/.circleci/config.yml +++ b/.circleci/config.yml @@ -2,7 +2,7 @@ version: 2.1 parameters: java-tag: type: string - default: "21.0.5" + default: "21.0.9" run_against_develop_core: type: boolean default: false @@ -179,7 +179,8 @@ jobs: # plugin, it has its own JVM. The two of these must add up to a bit less than 4GB. JAVA_TOOL_OPTIONS: -Xmx512m steps: # a collection of executable commands - - checkout # check out source code to working directory + - checkout: + method: full - restore_cache: # Read about caching dependencies: https://circleci.com/docs/2.0/caching/ keys: diff --git a/.github/workflows/mvnw.yml b/.github/workflows/mvnw.yml index 94a88aa5f..f71b8c557 100644 --- a/.github/workflows/mvnw.yml +++ b/.github/workflows/mvnw.yml @@ -4,10 +4,10 @@ on: [push] jobs: build: - runs-on: ubuntu-22.04 + runs-on: ubuntu-24.04 strategy: matrix: - java: [ '17.0.4+8', '21.0.5+11.0.LTS' ] + java: [ '21.0.5+11.0.LTS' ] steps: - name: install git secrets diff --git a/THIRD-PARTY-LICENSES.txt b/THIRD-PARTY-LICENSES.txt index f33576556..949228fe2 100644 --- a/THIRD-PARTY-LICENSES.txt +++ b/THIRD-PARTY-LICENSES.txt @@ -1,5 +1,5 @@ -Lists of 413 third-party dependencies. +Lists of 414 third-party dependencies. (Apache License, Version 2.0) akka-actor (com.typesafe.akka:akka-actor_2.13:2.5.32 - https://akka.io/) (Apache License, Version 2.0) akka-protobuf (com.typesafe.akka:akka-protobuf_2.13:2.5.32 - https://akka.io/) (Apache License, Version 2.0) akka-slf4j (com.typesafe.akka:akka-slf4j_2.13:2.5.32 - https://akka.io/) @@ -7,7 +7,7 @@ Lists of 413 third-party dependencies. (MIT) Alleycats core (org.typelevel:alleycats-core_2.13:2.7.0 - https://github.com/typelevel/cats) (EDL 1.0) Angus Activation Registries (org.eclipse.angus:angus-activation:2.0.0 - https://github.com/eclipse-ee4j/angus-activation/angus-activation) (Apache 2.0) annotation (org.typelevel:simulacrum-scalafix-annotations_2.13:0.5.4 - https://github.com/typelevel/simulacrum-scalafix) - (Apache License 2.0) Annotations for Metrics (io.dropwizard.metrics:metrics-annotation:4.2.37 - https://metrics.dropwizard.io/metrics-annotation) + (Apache License 2.0) Annotations for Metrics (io.dropwizard.metrics:metrics-annotation:4.2.38 - https://metrics.dropwizard.io/metrics-annotation) (BSD-3-Clause) ANTLR 4 Runtime (org.antlr:antlr4-runtime:4.13.0 - https://www.antlr.org/antlr4-runtime/) (EPL 2.0) (GPL2 w/ CPE) aopalliance version 1.0 repackaged as a module (org.glassfish.hk2.external:aopalliance-repackaged:3.0.6 - https://github.com/eclipse-ee4j/glassfish-hk2/external/aopalliance-repackaged) (Apache-2.0) Apache Avro (org.apache.avro:avro:1.11.4 - https://avro.apache.org) @@ -20,24 +20,24 @@ Lists of 413 third-party dependencies. (Apache License, Version 2.0) Apache Commons CSV (org.apache.commons:commons-csv:1.5 - http://commons.apache.org/proper/commons-csv/) (Apache License, Version 2.0) Apache Commons Exec (org.apache.commons:commons-exec:1.3 - http://commons.apache.org/proper/commons-exec/) (Apache-2.0) Apache Commons IO (commons-io:commons-io:2.19.0 - https://commons.apache.org/proper/commons-io/) - (Apache-2.0) Apache Commons Lang (org.apache.commons:commons-lang3:3.18.0 - https://commons.apache.org/proper/commons-lang/) + (Apache-2.0) Apache Commons Lang (org.apache.commons:commons-lang3:3.20.0 - https://commons.apache.org/proper/commons-lang/) (Apache-2.0) Apache Commons Logging (commons-logging:commons-logging:1.3.5 - https://commons.apache.org/proper/commons-logging/) (Apache License, Version 2.0) Apache Commons Net (commons-net:commons-net:3.9.0 - https://commons.apache.org/proper/commons-net/) - (Apache-2.0) Apache Commons Text (org.apache.commons:commons-text:1.14.0 - https://commons.apache.org/proper/commons-text) + (Apache-2.0) Apache Commons Text (org.apache.commons:commons-text:1.15.0 - https://commons.apache.org/proper/commons-text) (Apache License, Version 2.0) Apache Commons Validator (commons-validator:commons-validator:1.7 - http://commons.apache.org/proper/commons-validator/) (Apache-2.0) Apache Commons VFS (org.apache.commons:commons-vfs2:2.10.0 - https://commons.apache.org/proper/commons-vfs/) (The Apache Software License, Version 2.0) Apache Groovy (org.codehaus.groovy:groovy:2.5.14 - https://groovy-lang.org) (The Apache Software License, Version 2.0) Apache HTTP transport v2 for the Google HTTP Client Library for Java. (com.google.http-client:google-http-client-apache-v2:1.41.8 - https://github.com/googleapis/google-http-java-client/google-http-client-apache-v2) (Apache License, Version 2.0) Apache HttpAsyncClient (org.apache.httpcomponents:httpasyncclient:4.1.4 - http://hc.apache.org/httpcomponents-asyncclient) (Apache License, Version 2.0) Apache HttpClient (org.apache.httpcomponents:httpclient:4.5.14 - http://hc.apache.org/httpcomponents-client-ga) - (Apache License, Version 2.0) Apache HttpClient (org.apache.httpcomponents.client5:httpclient5:5.5 - https://hc.apache.org/httpcomponents-client-5.5.x/5.5/httpclient5/) - (Apache License, Version 2.0) Apache HttpComponents Core HTTP/1.1 (org.apache.httpcomponents.core5:httpcore5:5.3.5 - https://hc.apache.org/httpcomponents-core-5.3.x/5.3.5/httpcore5/) - (Apache License, Version 2.0) Apache HttpComponents Core HTTP/2 (org.apache.httpcomponents.core5:httpcore5-h2:5.3.4 - https://hc.apache.org/httpcomponents-core-5.3.x/5.3.4/httpcore5-h2/) + (Apache License, Version 2.0) Apache HttpClient (org.apache.httpcomponents.client5:httpclient5:5.5.2 - https://hc.apache.org/httpcomponents-client-5.5.x/5.5.2/httpclient5/) + (Apache License, Version 2.0) Apache HttpComponents Core HTTP/1.1 (org.apache.httpcomponents.core5:httpcore5:5.4 - https://hc.apache.org/httpcomponents-core-5.4.x/5.4/httpcore5/) + (Apache License, Version 2.0) Apache HttpComponents Core HTTP/2 (org.apache.httpcomponents.core5:httpcore5-h2:5.3.6 - https://hc.apache.org/httpcomponents-core-5.3.x/5.3.6/httpcore5-h2/) (Apache License, Version 2.0) Apache HttpCore (org.apache.httpcomponents:httpcore:4.4.16 - http://hc.apache.org/httpcomponents-core-ga) (Apache License, Version 2.0) Apache HttpCore NIO (org.apache.httpcomponents:httpcore-nio:4.4.16 - http://hc.apache.org/httpcomponents-core-ga) (Apache-2.0) Apache Log4j API (org.apache.logging.log4j:log4j-api:2.23.1 - https://logging.apache.org/log4j/2.x/log4j/log4j-api/) (MIT) argparse4j (net.sourceforge.argparse4j:argparse4j:0.9.0 - https://argparse4j.github.io) - (Apache License, Version 2.0) AssertJ fluent assertions (org.assertj:assertj-core:3.14.0 - http://assertj.org/assertj-core) + (Apache-2.0) AssertJ Core (org.assertj:assertj-core:3.27.7 - https://assertj.github.io/doc/#assertj-core) (Apache 2.0) async-http-client-backend (com.softwaremill.sttp:async-http-client-backend_2.13:1.7.2 - http://softwaremill.com/open-source) (Apache 2.0) async-http-client-backend-cats (com.softwaremill.sttp:async-http-client-backend-cats_2.13:1.7.2 - http://softwaremill.com/open-source) (The Apache Software License, Version 2.0) Asynchronous Http Client (org.asynchttpclient:async-http-client:2.12.4 - http://github.com/AsyncHttpClient/async-http-client/async-http-client) @@ -88,9 +88,9 @@ Lists of 413 third-party dependencies. (Bouncy Castle Licence) Bouncy Castle ASN.1 Extension and Utility APIs (org.bouncycastle:bcutil-jdk18on:1.78.1 - https://www.bouncycastle.org/java.html) (Bouncy Castle Licence) Bouncy Castle PKIX, CMS, EAC, TSP, PKCS, OCSP, CMP, and CRMF APIs (org.bouncycastle:bcpkix-jdk18on:1.80 - https://www.bouncycastle.org/download/bouncy-castle-java/) (Bouncy Castle Licence) Bouncy Castle Provider (org.bouncycastle:bcprov-jdk18on:1.78.1 - https://www.bouncycastle.org/java.html) - (Apache License, Version 2.0) Byte Buddy (without dependencies) (net.bytebuddy:byte-buddy:1.17.7 - https://bytebuddy.net/byte-buddy) - (Apache License, Version 2.0) Byte Buddy agent (net.bytebuddy:byte-buddy-agent:1.17.7 - https://bytebuddy.net/byte-buddy-agent) - (Apache License, Version 2.0) Caffeine cache (com.github.ben-manes.caffeine:caffeine:3.2.2 - https://github.com/ben-manes/caffeine) + (Apache License, Version 2.0) Byte Buddy (without dependencies) (net.bytebuddy:byte-buddy:1.18.4 - https://bytebuddy.net/byte-buddy) + (Apache License, Version 2.0) Byte Buddy agent (net.bytebuddy:byte-buddy-agent:1.18.4 - https://bytebuddy.net/byte-buddy-agent) + (Apache License, Version 2.0) Caffeine cache (com.github.ben-manes.caffeine:caffeine:3.2.3 - https://github.com/ben-manes/caffeine) (Apache 2.0) cats (com.softwaremill.sttp:cats_2.13:1.7.2 - http://softwaremill.com/open-source) (MIT) Cats core (org.typelevel:cats-core_2.13:2.7.0 - https://github.com/typelevel/cats) (MIT) Cats Free (org.typelevel:cats-free_2.13:2.1.1 - https://github.com/typelevel/cats) @@ -110,7 +110,7 @@ Lists of 413 third-party dependencies. (Apache-2.0) circe-config (io.circe:circe-config_2.13:0.8.0 - https://github.com/circe/circe-config) (Apache 2.0) circe-yaml (io.circe:circe-yaml_2.13:0.14.1 - https://github.com/circe/circe-yaml) (The MIT License (MIT)) ClassGraph (io.github.classgraph:classgraph:4.8.154 - https://github.com/classgraph/classgraph) - (Apache License, Version 2.0) ClassMate (com.fasterxml:classmate:1.7.0 - https://github.com/FasterXML/java-classmate) + (Apache License, Version 2.0) ClassMate (com.fasterxml:classmate:1.7.3 - https://github.com/FasterXML/java-classmate) (The Apache License, Version 2.0) com.helger:profiler (com.helger:profiler:1.1.1 - https://github.com/phax/profiler) (BSD-2-Clause) commonmark-java core (org.commonmark:commonmark:0.24.0 - https://github.com/commonmark/commonmark-java/commonmark) (The Apache Software License, Version 2.0) Commons Digester (commons-digester:commons-digester:2.1 - http://commons.apache.org/digester/) @@ -122,12 +122,12 @@ Lists of 413 third-party dependencies. (Apache 2.0) core (com.softwaremill.sttp:core_2.13:1.7.2 - http://softwaremill.com/open-source) (Apache 2) core (org.typelevel:kittens_2.13:2.3.2 - https://github.com/typelevel/kittens) (Three-clause BSD-style) core (org.typelevel:simulacrum_2.13:1.0.1 - http://github.com/mpilquist/simulacrum) - (Apache Software License - Version 2.0) (Eclipse Public License - Version 2.0) Core :: HTTP (org.eclipse.jetty:jetty-http:12.1.1 - https://jetty.org/jetty-core/jetty-http) - (Apache Software License - Version 2.0) (Eclipse Public License - Version 2.0) Core :: IO (org.eclipse.jetty:jetty-io:12.1.1 - https://jetty.org/jetty-core/jetty-io) - (Apache Software License - Version 2.0) (Eclipse Public License - Version 2.0) Core :: Security (org.eclipse.jetty:jetty-security:12.1.1 - https://jetty.org/jetty-core/jetty-security) - (Apache Software License - Version 2.0) (Eclipse Public License - Version 2.0) Core :: Server (org.eclipse.jetty:jetty-server:12.1.1 - https://jetty.org/jetty-core/jetty-server) - (Apache Software License - Version 2.0) (Eclipse Public License - Version 2.0) Core :: Sessions (org.eclipse.jetty:jetty-session:12.1.1 - https://jetty.org/jetty-core/jetty-session) - (Apache Software License - Version 2.0) (Eclipse Public License - Version 2.0) Core :: Utilities (org.eclipse.jetty:jetty-util:12.1.1 - https://jetty.org/jetty-core/jetty-util) + (Apache-2.0) (EPL-2.0) Core :: HTTP (org.eclipse.jetty:jetty-http:12.1.5 - https://jetty.org/jetty-core/jetty-http) + (Apache-2.0) (EPL-2.0) Core :: IO (org.eclipse.jetty:jetty-io:12.1.5 - https://jetty.org/jetty-core/jetty-io) + (Apache-2.0) (EPL-2.0) Core :: Security (org.eclipse.jetty:jetty-security:12.1.5 - https://jetty.org/jetty-core/jetty-security) + (Apache-2.0) (EPL-2.0) Core :: Server (org.eclipse.jetty:jetty-server:12.1.5 - https://jetty.org/jetty-core/jetty-server) + (Apache-2.0) (EPL-2.0) Core :: Sessions (org.eclipse.jetty:jetty-session:12.1.5 - https://jetty.org/jetty-core/jetty-session) + (Apache-2.0) (EPL-2.0) Core :: Utilities (org.eclipse.jetty:jetty-util:12.1.5 - https://jetty.org/jetty-core/jetty-util) (Cromwell License https://github.com/broadinstitute/cromwell/blob/develop/LICENSE.txt) cromwell-common (org.broadinstitute:cromwell-common_2.13:85 - no url defined) (Cromwell License https://github.com/broadinstitute/cromwell/blob/develop/LICENSE.txt) cromwell-core (org.broadinstitute:cromwell-core_2.13:85 - no url defined) (Cromwell License https://github.com/broadinstitute/cromwell/blob/develop/LICENSE.txt) cromwell-wdl-model-biscayne (org.broadinstitute:cromwell-wdl-model-biscayne_2.13:85 - no url defined) @@ -146,34 +146,34 @@ Lists of 413 third-party dependencies. (The Apache Software License, Version 2.0) docker-java-core (com.github.docker-java:docker-java-core:3.5.1 - https://github.com/docker-java/docker-java) (The Apache Software License, Version 2.0) docker-java-transport (com.github.docker-java:docker-java-transport:3.5.1 - https://github.com/docker-java/docker-java) (The Apache Software License, Version 2.0) docker-java-transport-httpclient5 (com.github.docker-java:docker-java-transport-httpclient5:3.5.1 - https://github.com/docker-java/docker-java) - (Apache License 2.0) Dropwizard (io.dropwizard:dropwizard-core:5.0.0 - http://www.dropwizard.io/5.0.0/dropwizard-bom/dropwizard-dependencies/dropwizard-parent/dropwizard-core) - (Apache License 2.0) Dropwizard Asset Bundle (io.dropwizard:dropwizard-assets:5.0.0 - http://www.dropwizard.io/5.0.0/dropwizard-bom/dropwizard-dependencies/dropwizard-parent/dropwizard-assets) - (Apache License 2.0) Dropwizard Authentication (io.dropwizard:dropwizard-auth:5.0.0 - http://www.dropwizard.io/5.0.0/dropwizard-bom/dropwizard-dependencies/dropwizard-parent/dropwizard-auth) - (Apache License 2.0) Dropwizard Configuration Support (io.dropwizard:dropwizard-configuration:5.0.0 - http://www.dropwizard.io/5.0.0/dropwizard-bom/dropwizard-dependencies/dropwizard-parent/dropwizard-configuration) - (Apache License 2.0) Dropwizard Database Support (io.dropwizard:dropwizard-db:5.0.0 - http://www.dropwizard.io/5.0.0/dropwizard-bom/dropwizard-dependencies/dropwizard-parent/dropwizard-db) - (Apache License 2.0) Dropwizard Health Checking Support (io.dropwizard:dropwizard-health:5.0.0 - http://www.dropwizard.io/5.0.0/dropwizard-bom/dropwizard-dependencies/dropwizard-parent/dropwizard-health) - (Apache License 2.0) Dropwizard Hibernate Support (io.dropwizard:dropwizard-hibernate:5.0.0 - http://www.dropwizard.io/5.0.0/dropwizard-bom/dropwizard-dependencies/dropwizard-parent/dropwizard-hibernate) - (Apache License 2.0) Dropwizard HTTP Client (io.dropwizard:dropwizard-client:5.0.0 - http://www.dropwizard.io/5.0.0/dropwizard-bom/dropwizard-dependencies/dropwizard-parent/dropwizard-client) - (Apache License 2.0) Dropwizard Jackson Support (io.dropwizard:dropwizard-jackson:5.0.0 - http://www.dropwizard.io/5.0.0/dropwizard-bom/dropwizard-dependencies/dropwizard-parent/dropwizard-jackson) - (Apache License 2.0) Dropwizard JDBI3 Support (io.dropwizard:dropwizard-jdbi3:5.0.0 - http://www.dropwizard.io/5.0.0/dropwizard-bom/dropwizard-dependencies/dropwizard-parent/dropwizard-jdbi3) - (Apache License 2.0) Dropwizard Jersey Support (io.dropwizard:dropwizard-jersey:5.0.0 - http://www.dropwizard.io/5.0.0/dropwizard-bom/dropwizard-dependencies/dropwizard-parent/dropwizard-jersey) - (Apache License 2.0) Dropwizard Jetty Support (io.dropwizard:dropwizard-jetty:5.0.0 - http://www.dropwizard.io/5.0.0/dropwizard-bom/dropwizard-dependencies/dropwizard-parent/dropwizard-jetty) - (Apache License 2.0) Dropwizard Lifecycle Support (io.dropwizard:dropwizard-lifecycle:5.0.0 - http://www.dropwizard.io/5.0.0/dropwizard-bom/dropwizard-dependencies/dropwizard-parent/dropwizard-lifecycle) - (Apache License 2.0) Dropwizard Logging Support (io.dropwizard:dropwizard-logging:5.0.0 - http://www.dropwizard.io/5.0.0/dropwizard-bom/dropwizard-dependencies/dropwizard-parent/dropwizard-logging) - (Apache License 2.0) Dropwizard Metrics Support (io.dropwizard:dropwizard-metrics:5.0.0 - http://www.dropwizard.io/5.0.0/dropwizard-bom/dropwizard-dependencies/dropwizard-parent/dropwizard-metrics) - (Apache License 2.0) Dropwizard Migrations (io.dropwizard:dropwizard-migrations:5.0.0 - http://www.dropwizard.io/5.0.0/dropwizard-bom/dropwizard-dependencies/dropwizard-parent/dropwizard-migrations) - (Apache License 2.0) Dropwizard Multipart Form Support (io.dropwizard:dropwizard-forms:5.0.0 - http://www.dropwizard.io/5.0.0/dropwizard-bom/dropwizard-dependencies/dropwizard-parent/dropwizard-forms) - (Apache License 2.0) Dropwizard Request Logging Support (io.dropwizard:dropwizard-request-logging:5.0.0 - http://www.dropwizard.io/5.0.0/dropwizard-bom/dropwizard-dependencies/dropwizard-parent/dropwizard-request-logging) - (Apache License 2.0) Dropwizard Servlet Support (io.dropwizard:dropwizard-servlets:5.0.0 - http://www.dropwizard.io/5.0.0/dropwizard-bom/dropwizard-dependencies/dropwizard-parent/dropwizard-servlets) - (Apache License 2.0) Dropwizard Test Helpers (io.dropwizard:dropwizard-testing:5.0.0 - http://www.dropwizard.io/5.0.0/dropwizard-bom/dropwizard-dependencies/dropwizard-parent/dropwizard-testing) - (Apache License 2.0) Dropwizard Utility Classes (io.dropwizard:dropwizard-util:5.0.0 - http://www.dropwizard.io/5.0.0/dropwizard-bom/dropwizard-dependencies/dropwizard-parent/dropwizard-util) - (Apache License 2.0) Dropwizard Validation Support (io.dropwizard:dropwizard-validation:5.0.0 - http://www.dropwizard.io/5.0.0/dropwizard-bom/dropwizard-dependencies/dropwizard-parent/dropwizard-validation) + (Apache License 2.0) Dropwizard (io.dropwizard:dropwizard-core:5.0.1 - http://www.dropwizard.io/5.0.1/dropwizard-bom/dropwizard-dependencies/dropwizard-parent/dropwizard-core) + (Apache License 2.0) Dropwizard Asset Bundle (io.dropwizard:dropwizard-assets:5.0.1 - http://www.dropwizard.io/5.0.1/dropwizard-bom/dropwizard-dependencies/dropwizard-parent/dropwizard-assets) + (Apache License 2.0) Dropwizard Authentication (io.dropwizard:dropwizard-auth:5.0.1 - http://www.dropwizard.io/5.0.1/dropwizard-bom/dropwizard-dependencies/dropwizard-parent/dropwizard-auth) + (Apache License 2.0) Dropwizard Configuration Support (io.dropwizard:dropwizard-configuration:5.0.1 - http://www.dropwizard.io/5.0.1/dropwizard-bom/dropwizard-dependencies/dropwizard-parent/dropwizard-configuration) + (Apache License 2.0) Dropwizard Database Support (io.dropwizard:dropwizard-db:5.0.1 - http://www.dropwizard.io/5.0.1/dropwizard-bom/dropwizard-dependencies/dropwizard-parent/dropwizard-db) + (Apache License 2.0) Dropwizard Health Checking Support (io.dropwizard:dropwizard-health:5.0.1 - http://www.dropwizard.io/5.0.1/dropwizard-bom/dropwizard-dependencies/dropwizard-parent/dropwizard-health) + (Apache License 2.0) Dropwizard Hibernate Support (io.dropwizard:dropwizard-hibernate:5.0.1 - http://www.dropwizard.io/5.0.1/dropwizard-bom/dropwizard-dependencies/dropwizard-parent/dropwizard-hibernate) + (Apache License 2.0) Dropwizard HTTP Client (io.dropwizard:dropwizard-client:5.0.1 - http://www.dropwizard.io/5.0.1/dropwizard-bom/dropwizard-dependencies/dropwizard-parent/dropwizard-client) + (Apache License 2.0) Dropwizard Jackson Support (io.dropwizard:dropwizard-jackson:5.0.1 - http://www.dropwizard.io/5.0.1/dropwizard-bom/dropwizard-dependencies/dropwizard-parent/dropwizard-jackson) + (Apache License 2.0) Dropwizard JDBI3 Support (io.dropwizard:dropwizard-jdbi3:5.0.1 - http://www.dropwizard.io/5.0.1/dropwizard-bom/dropwizard-dependencies/dropwizard-parent/dropwizard-jdbi3) + (Apache License 2.0) Dropwizard Jersey Support (io.dropwizard:dropwizard-jersey:5.0.1 - http://www.dropwizard.io/5.0.1/dropwizard-bom/dropwizard-dependencies/dropwizard-parent/dropwizard-jersey) + (Apache License 2.0) Dropwizard Jetty Support (io.dropwizard:dropwizard-jetty:5.0.1 - http://www.dropwizard.io/5.0.1/dropwizard-bom/dropwizard-dependencies/dropwizard-parent/dropwizard-jetty) + (Apache License 2.0) Dropwizard Lifecycle Support (io.dropwizard:dropwizard-lifecycle:5.0.1 - http://www.dropwizard.io/5.0.1/dropwizard-bom/dropwizard-dependencies/dropwizard-parent/dropwizard-lifecycle) + (Apache License 2.0) Dropwizard Logging Support (io.dropwizard:dropwizard-logging:5.0.1 - http://www.dropwizard.io/5.0.1/dropwizard-bom/dropwizard-dependencies/dropwizard-parent/dropwizard-logging) + (Apache License 2.0) Dropwizard Metrics Support (io.dropwizard:dropwizard-metrics:5.0.1 - http://www.dropwizard.io/5.0.1/dropwizard-bom/dropwizard-dependencies/dropwizard-parent/dropwizard-metrics) + (Apache License 2.0) Dropwizard Migrations (io.dropwizard:dropwizard-migrations:5.0.1 - http://www.dropwizard.io/5.0.1/dropwizard-bom/dropwizard-dependencies/dropwizard-parent/dropwizard-migrations) + (Apache License 2.0) Dropwizard Multipart Form Support (io.dropwizard:dropwizard-forms:5.0.1 - http://www.dropwizard.io/5.0.1/dropwizard-bom/dropwizard-dependencies/dropwizard-parent/dropwizard-forms) + (Apache License 2.0) Dropwizard Request Logging Support (io.dropwizard:dropwizard-request-logging:5.0.1 - http://www.dropwizard.io/5.0.1/dropwizard-bom/dropwizard-dependencies/dropwizard-parent/dropwizard-request-logging) + (Apache License 2.0) Dropwizard Servlet Support (io.dropwizard:dropwizard-servlets:5.0.1 - http://www.dropwizard.io/5.0.1/dropwizard-bom/dropwizard-dependencies/dropwizard-parent/dropwizard-servlets) + (Apache License 2.0) Dropwizard Test Helpers (io.dropwizard:dropwizard-testing:5.0.1 - http://www.dropwizard.io/5.0.1/dropwizard-bom/dropwizard-dependencies/dropwizard-parent/dropwizard-testing) + (Apache License 2.0) Dropwizard Utility Classes (io.dropwizard:dropwizard-util:5.0.1 - http://www.dropwizard.io/5.0.1/dropwizard-bom/dropwizard-dependencies/dropwizard-parent/dropwizard-util) + (Apache License 2.0) Dropwizard Validation Support (io.dropwizard:dropwizard-validation:5.0.1 - http://www.dropwizard.io/5.0.1/dropwizard-bom/dropwizard-dependencies/dropwizard-parent/dropwizard-validation) (Apache 2) EasyMock (org.easymock:easymock:4.0.1 - http://easymock.org/easymock) (Eclipse Public License v. 2.0) (GNU General Public License, version 2 with the GNU Classpath Exception) Eclipse Expressly (org.glassfish.expressly:expressly:5.0.0 - https://projects.eclipse.org/projects/ee4j.expressly) - (Apache Software License - Version 2.0) (Eclipse Public License - Version 2.0) EE10 :: Servlet (org.eclipse.jetty.ee10:jetty-ee10-servlet:12.1.1 - https://jetty.org/jetty-ee10/jetty-ee10-servlet) + (Apache-2.0) (EPL-2.0) EE10 :: Servlet (org.eclipse.jetty.ee10:jetty-ee10-servlet:12.1.5 - https://jetty.org/jetty-ee10/jetty-ee10-servlet) (The Apache Software License, Version 2.0) elasticsearch-core (org.elasticsearch:elasticsearch-core:7.10.2 - https://github.com/elastic/elasticsearch) (The Apache Software License, Version 2.0) elasticsearch-x-content (org.elasticsearch:elasticsearch-x-content:7.10.2 - https://github.com/elastic/elasticsearch) - (Apache 2.0) error-prone annotations (com.google.errorprone:error_prone_annotations:2.41.0 - https://errorprone.info/error_prone_annotations) + (Apache 2.0) error-prone annotations (com.google.errorprone:error_prone_annotations:2.43.0 - https://errorprone.info/error_prone_annotations) (MIT) fansi_2.13 (com.lihaoyi:fansi_2.13:0.3.1 - https://github.com/lihaoyi/Fansi) (MIT) ficus (com.iheart:ficus_2.13:1.5.2 - http://iheartradio.github.io/ficus) (The Apache Software License, Version 2.0) FindBugs-jsr305 (com.google.code.findbugs:jsr305:3.0.2 - http://findbugs.sourceforge.net/) @@ -192,11 +192,11 @@ Lists of 413 third-party dependencies. (The Apache Software License, Version 2.0) GSON extensions to the Google HTTP Client Library for Java. (com.google.http-client:google-http-client-gson:1.41.8 - https://github.com/googleapis/google-http-java-client/google-http-client-gson) (Apache License, Version 2.0) Guava InternalFutureFailureAccess and InternalFutures (com.google.guava:failureaccess:1.0.3 - https://github.com/google/guava/failureaccess) (The Apache Software License, Version 2.0) Guava ListenableFuture only (com.google.guava:listenablefuture:9999.0-empty-to-avoid-conflict-with-guava - https://github.com/google/guava/listenablefuture) - (Apache License, Version 2.0) Guava: Google Core Libraries for Java (com.google.guava:guava:33.4.8-jre - https://github.com/google/guava) + (Apache License, Version 2.0) Guava: Google Core Libraries for Java (com.google.guava:guava:33.5.0-jre - https://github.com/google/guava) (BSD-3-Clause) Hamcrest (org.hamcrest:hamcrest:3.0 - http://hamcrest.org/JavaHamcrest/) (New BSD License) Hamcrest Core (org.hamcrest:hamcrest-core:1.3 - https://github.com/hamcrest/JavaHamcrest/hamcrest-core) (Apache License Version 2.0) Hibernate Commons Annotations (org.hibernate.common:hibernate-commons-annotations:7.0.3.Final - http://hibernate.org) - (GNU Library General Public License v2.1 or later) Hibernate ORM - hibernate-core (org.hibernate.orm:hibernate-core:6.6.29.Final - https://hibernate.org/orm) + (GNU Library General Public License v2.1 or later) Hibernate ORM - hibernate-core (org.hibernate.orm:hibernate-core:6.6.41.Final - https://hibernate.org/orm) (Apache License 2.0) Hibernate Validator Engine (org.hibernate.validator:hibernate-validator:8.0.3.Final - https://hibernate.org/validator) (EPL 2.0) (GPL2 w/ CPE) HK2 API module (org.glassfish.hk2:hk2-api:3.0.6 - https://github.com/eclipse-ee4j/glassfish-hk2/hk2-api) (EPL 2.0) (GPL2 w/ CPE) HK2 Implementation Utilities (org.glassfish.hk2:hk2-utils:3.0.6 - https://github.com/eclipse-ee4j/glassfish-hk2/hk2-utils) @@ -204,27 +204,28 @@ Lists of 413 third-party dependencies. (The Apache Software License, Version 2.0) HPPC Collections (com.carrotsearch:hppc:0.8.1 - http://labs.carrotsearch.com/hppc.html/hppc) (Apache 2.0) io.grpc:grpc-context (io.grpc:grpc-context:1.27.2 - https://github.com/grpc/grpc-java) (Eclipse Distribution License - v 1.0) istack common utility code runtime (com.sun.istack:istack-commons-runtime:4.1.1 - https://projects.eclipse.org/projects/ee4j/istack-commons/istack-commons-runtime) - (Apache License, Version 2.0) J2ObjC Annotations (com.google.j2objc:j2objc-annotations:3.0.0 - https://github.com/google/j2objc/) + (Apache License, Version 2.0) J2ObjC Annotations (com.google.j2objc:j2objc-annotations:3.1 - https://github.com/google/j2objc/) (The Apache Software License, Version 2.0) Jackson (org.codehaus.jackson:jackson-core-asl:1.9.13 - http://jackson.codehaus.org) (The Apache Software License, Version 2.0) Jackson 2 extensions to the Google APIs Client Library for Java (com.google.api-client:google-api-client-jackson2:1.35.0 - https://github.com/googleapis/google-api-java-client/google-api-client-jackson2) - (The Apache Software License, Version 2.0) Jackson dataformat: CBOR (com.fasterxml.jackson.dataformat:jackson-dataformat-cbor:2.20.0 - https://github.com/FasterXML/jackson-dataformats-binary) - (The Apache Software License, Version 2.0) Jackson datatype: Guava (com.fasterxml.jackson.datatype:jackson-datatype-guava:2.20.0 - https://github.com/FasterXML/jackson-datatypes-collections) - (The Apache Software License, Version 2.0) Jackson datatype: jdk8 (com.fasterxml.jackson.datatype:jackson-datatype-jdk8:2.20.0 - https://github.com/FasterXML/jackson-modules-java8/jackson-datatype-jdk8) - (The Apache Software License, Version 2.0) Jackson datatype: JSR310 (com.fasterxml.jackson.datatype:jackson-datatype-jsr310:2.20.0 - https://github.com/FasterXML/jackson-modules-java8/jackson-datatype-jsr310) + (The Apache Software License, Version 2.0) Jackson dataformat: CBOR (com.fasterxml.jackson.dataformat:jackson-dataformat-cbor:2.21.0 - https://github.com/FasterXML/jackson-dataformats-binary) + (The Apache Software License, Version 2.0) Jackson datatype: Guava (com.fasterxml.jackson.datatype:jackson-datatype-guava:2.21.0 - https://github.com/FasterXML/jackson-datatypes-collections) + (The Apache Software License, Version 2.0) Jackson datatype: jdk8 (com.fasterxml.jackson.datatype:jackson-datatype-jdk8:2.21.0 - https://github.com/FasterXML/jackson-modules-java8/jackson-datatype-jdk8) + (The Apache Software License, Version 2.0) Jackson datatype: JSR310 (com.fasterxml.jackson.datatype:jackson-datatype-jsr310:2.21.0 - https://github.com/FasterXML/jackson-modules-java8/jackson-datatype-jsr310) (The Apache Software License, Version 2.0) Jackson extensions to the Google HTTP Client Library for Java. (com.google.http-client:google-http-client-jackson:1.29.2 - https://github.com/googleapis/google-http-java-client/google-http-client-jackson) - (Apache License 2.0) Jackson Integration for Metrics (io.dropwizard.metrics:metrics-json:4.2.37 - https://metrics.dropwizard.io/metrics-json) - (The Apache Software License, Version 2.0) Jackson Jakarta-RS: base (com.fasterxml.jackson.jakarta.rs:jackson-jakarta-rs-base:2.20.0 - https://github.com/FasterXML/jackson-jakarta-rs-providers/jackson-jakarta-rs-base) - (The Apache Software License, Version 2.0) Jackson Jakarta-RS: JSON (com.fasterxml.jackson.jakarta.rs:jackson-jakarta-rs-json-provider:2.20.0 - https://github.com/FasterXML/jackson-jakarta-rs-providers/jackson-jakarta-rs-json-provider) - (The Apache Software License, Version 2.0) Jackson module: Blackbird (com.fasterxml.jackson.module:jackson-module-blackbird:2.20.0 - https://github.com/FasterXML/jackson-modules-base) - (The Apache Software License, Version 2.0) Jackson module: Jakarta XML Bind Annotations (jakarta.xml.bind) (com.fasterxml.jackson.module:jackson-module-jakarta-xmlbind-annotations:2.20.0 - https://github.com/FasterXML/jackson-modules-base) - (The Apache Software License, Version 2.0) Jackson-annotations (com.fasterxml.jackson.core:jackson-annotations:2.20 - https://github.com/FasterXML/jackson) - (The Apache Software License, Version 2.0) Jackson-core (com.fasterxml.jackson.core:jackson-core:2.20.0 - https://github.com/FasterXML/jackson-core) - (The Apache Software License, Version 2.0) jackson-databind (com.fasterxml.jackson.core:jackson-databind:2.20.0 - https://github.com/FasterXML/jackson) - (The Apache Software License, Version 2.0) Jackson-dataformat-XML (com.fasterxml.jackson.dataformat:jackson-dataformat-xml:2.20.0 - https://github.com/FasterXML/jackson-dataformat-xml) - (The Apache Software License, Version 2.0) Jackson-dataformat-YAML (com.fasterxml.jackson.dataformat:jackson-dataformat-yaml:2.20.0 - https://github.com/FasterXML/jackson-dataformats-text) - (The Apache Software License, Version 2.0) Jackson-datatype-Hibernate5-jakarta (com.fasterxml.jackson.datatype:jackson-datatype-hibernate5-jakarta:2.20.0 - https://github.com/FasterXML/jackson-datatype-hibernate) - (The Apache Software License, Version 2.0) Jackson-JAXRS: base (com.fasterxml.jackson.jaxrs:jackson-jaxrs-base:2.20.0 - https://github.com/FasterXML/jackson-jaxrs-providers/jackson-jaxrs-base) - (The Apache Software License, Version 2.0) Jackson-module-parameter-names (com.fasterxml.jackson.module:jackson-module-parameter-names:2.20.0 - https://github.com/FasterXML/jackson-modules-java8/jackson-module-parameter-names) + (Apache License 2.0) Jackson Integration for Metrics (io.dropwizard.metrics:metrics-json:4.2.38 - https://metrics.dropwizard.io/metrics-json) + (The Apache Software License, Version 2.0) Jackson Jakarta-RS: base (com.fasterxml.jackson.jakarta.rs:jackson-jakarta-rs-base:2.21.0 - https://github.com/FasterXML/jackson-jakarta-rs-providers/jackson-jakarta-rs-base) + (The Apache Software License, Version 2.0) Jackson Jakarta-RS: JSON (com.fasterxml.jackson.jakarta.rs:jackson-jakarta-rs-json-provider:2.21.0 - https://github.com/FasterXML/jackson-jakarta-rs-providers/jackson-jakarta-rs-json-provider) + (The Apache Software License, Version 2.0) Jackson module: Blackbird (com.fasterxml.jackson.module:jackson-module-blackbird:2.21.0 - https://github.com/FasterXML/jackson-modules-base) + (The Apache Software License, Version 2.0) Jackson module: Jakarta XML Bind Annotations (jakarta.xml.bind) (com.fasterxml.jackson.module:jackson-module-jakarta-xmlbind-annotations:2.21.0 - https://github.com/FasterXML/jackson-modules-base) + (The Apache Software License, Version 2.0) Jackson-annotations (com.fasterxml.jackson.core:jackson-annotations:2.21 - https://github.com/FasterXML/jackson) + (The Apache Software License, Version 2.0) Jackson-core (com.fasterxml.jackson.core:jackson-core:2.21.0 - https://github.com/FasterXML/jackson-core) + (The Apache Software License, Version 2.0) jackson-databind (com.fasterxml.jackson.core:jackson-databind:2.21.0 - https://github.com/FasterXML/jackson) + (The Apache Software License, Version 2.0) Jackson-dataformat-XML (com.fasterxml.jackson.dataformat:jackson-dataformat-xml:2.21.0 - https://github.com/FasterXML/jackson-dataformat-xml) + (The Apache Software License, Version 2.0) Jackson-dataformat-YAML (com.fasterxml.jackson.dataformat:jackson-dataformat-yaml:2.21.0 - https://github.com/FasterXML/jackson-dataformats-text) + (The Apache Software License, Version 2.0) Jackson-datatype-Hibernate5-jakarta (com.fasterxml.jackson.datatype:jackson-datatype-hibernate5-jakarta:2.21.0 - https://github.com/FasterXML/jackson-datatype-hibernate) + (The Apache Software License, Version 2.0) Jackson-datatype-hibernate6 (com.fasterxml.jackson.datatype:jackson-datatype-hibernate6:2.21.0 - https://github.com/FasterXML/jackson-datatype-hibernate) + (The Apache Software License, Version 2.0) Jackson-JAXRS: base (com.fasterxml.jackson.jaxrs:jackson-jaxrs-base:2.21.0 - https://github.com/FasterXML/jackson-jaxrs-providers/jackson-jaxrs-base) + (The Apache Software License, Version 2.0) Jackson-module-parameter-names (com.fasterxml.jackson.module:jackson-module-parameter-names:2.21.0 - https://github.com/FasterXML/jackson-modules-java8/jackson-module-parameter-names) (EDL 1.0) Jakarta Activation API (jakarta.activation:jakarta.activation-api:2.1.4 - https://github.com/jakartaee/jaf-api) (EPL 2.0) (GPL2 w/ CPE) Jakarta Annotations API (jakarta.annotation:jakarta.annotation-api:3.0.0 - https://projects.eclipse.org/projects/ee4j.ca) (Apache License 2.0) Jakarta Bean Validation API (jakarta.validation:jakarta.validation-api:3.0.2 - https://beanvalidation.org) @@ -246,16 +247,15 @@ Lists of 413 third-party dependencies. (The Apache Software License, Version 2.0) java-diff-utils (io.github.java-diff-utils:java-diff-utils:4.12 - https://github.com/java-diff-utils/java-diff-utils/java-diff-utils) (CDDL/GPLv2+CE) JavaBeans Activation Framework API jar (javax.activation:javax.activation-api:1.2.0 - http://java.net/all/javax.activation-api/) (Apache License 2.0) (LGPL 2.1) (MPL 1.1) Javassist (org.javassist:javassist:3.30.2-GA - https://www.javassist.org/) - (CDDL + GPLv2 with classpath exception) javax.annotation API (javax.annotation:javax.annotation-api:1.3.2 - http://jcp.org/en/jsr/detail?id=250) (Eclipse Distribution License - v 1.0) JAXB Core (org.glassfish.jaxb:jaxb-core:4.0.2 - https://eclipse-ee4j.github.io/jaxb-ri/) (Eclipse Distribution License - v 1.0) JAXB Runtime (org.glassfish.jaxb:jaxb-runtime:4.0.2 - https://eclipse-ee4j.github.io/jaxb-ri/) (CDDL 1.1) (GPL2 w/ CPE) jaxb-api (javax.xml.bind:jaxb-api:2.3.1 - https://github.com/javaee/jaxb-spec/jaxb-api) (Apache License 2.0) JBoss Logging 3 (org.jboss.logging:jboss-logging:3.6.1.Final - http://www.jboss.org) (Apache-2.0) JCL 1.2 implemented over SLF4J (org.slf4j:jcl-over-slf4j:2.0.17 - http://www.slf4j.org) (Apache License, Version 2.0) jcommander (com.beust:jcommander:1.82 - https://jcommander.org) - (Apache License 2.0) jdbi3 core (org.jdbi:jdbi3-core:3.49.5 - https://jdbi.org/jdbi3-parent/jdbi3-core/) - (Apache License 2.0) jdbi3 guava (org.jdbi:jdbi3-guava:3.49.5 - https://jdbi.org/jdbi3-parent/jdbi3-guava/) - (Apache License 2.0) jdbi3 sqlobject (org.jdbi:jdbi3-sqlobject:3.49.5 - https://jdbi.org/jdbi3-parent/jdbi3-sqlobject/) + (Apache License 2.0) jdbi3 core (org.jdbi:jdbi3-core:3.51.0 - https://jdbi.org/) + (Apache License 2.0) jdbi3 guava (org.jdbi:jdbi3-guava:3.51.0 - https://jdbi.org/) + (Apache License 2.0) jdbi3 sqlobject (org.jdbi:jdbi3-sqlobject:3.51.0 - https://jdbi.org/) (Apache License, 2.0) (BSD 2-Clause) (EDL 1.0) (EPL 2.0) (GPL2 w/ CPE) (MIT license) (Modified BSD) (Public Domain) (W3C license) (jQuery license) jersey-connectors-apache5 (org.glassfish.jersey.connectors:jersey-apache5-connector:3.1.11 - https://projects.eclipse.org/projects/ee4j.jersey/project/jersey-apache5-connector) (Apache License, 2.0) (BSD 2-Clause) (EDL 1.0) (EPL 2.0) (GPL2 w/ CPE) (MIT license) (Modified BSD) (Public Domain) (W3C license) (jQuery license) jersey-container-servlet (org.glassfish.jersey.containers:jersey-container-servlet:3.1.11 - https://projects.eclipse.org/projects/ee4j.jersey/project/jersey-container-servlet) (Apache License, 2.0) (BSD 2-Clause) (EDL 1.0) (EPL 2.0) (GPL2 w/ CPE) (MIT license) (Modified BSD) (Public Domain) (W3C license) (jQuery license) jersey-container-servlet-core (org.glassfish.jersey.containers:jersey-container-servlet-core:3.1.11 - https://projects.eclipse.org/projects/ee4j.jersey/project/jersey-container-servlet-core) @@ -286,46 +286,46 @@ Lists of 413 third-party dependencies. (Apache License, Version 2.0) JSR 354 (Money and Currency API) (javax.money:money-api:1.1 - https://javamoney.github.io/) (MIT) JUL to SLF4J bridge (org.slf4j:jul-to-slf4j:2.0.17 - http://www.slf4j.org) (Eclipse Public License 1.0) JUnit (junit:junit:4.13.2 - http://junit.org) - (Eclipse Public License v2.0) JUnit Jupiter (Aggregator) (org.junit.jupiter:junit-jupiter:5.13.4 - https://junit.org/) - (Eclipse Public License v2.0) JUnit Jupiter API (org.junit.jupiter:junit-jupiter-api:5.13.4 - https://junit.org/) - (Eclipse Public License v2.0) JUnit Jupiter Engine (org.junit.jupiter:junit-jupiter-engine:5.13.4 - https://junit.org/) - (Eclipse Public License v2.0) JUnit Jupiter Params (org.junit.jupiter:junit-jupiter-params:5.13.4 - https://junit.org/) - (Eclipse Public License v2.0) JUnit Platform Commons (org.junit.platform:junit-platform-commons:1.13.4 - https://junit.org/) - (Eclipse Public License v2.0) JUnit Platform Engine API (org.junit.platform:junit-platform-engine:1.13.4 - https://junit.org/) - (Eclipse Public License v2.0) JUnit Vintage Engine (org.junit.vintage:junit-vintage-engine:5.13.4 - https://junit.org/) - (Apache License 2.0) JVM Integration for Metrics (io.dropwizard.metrics:metrics-jvm:4.2.37 - https://metrics.dropwizard.io/metrics-jvm) - (The Apache License, Version 2.0) Kotlin Stdlib (org.jetbrains.kotlin:kotlin-stdlib:1.6.20 - https://kotlinlang.org/) - (The Apache License, Version 2.0) Kotlin Stdlib Common (org.jetbrains.kotlin:kotlin-stdlib-common:1.6.20 - https://kotlinlang.org/) - (The Apache License, Version 2.0) Kotlin Stdlib Jdk7 (org.jetbrains.kotlin:kotlin-stdlib-jdk7:1.5.31 - https://kotlinlang.org/) - (The Apache License, Version 2.0) Kotlin Stdlib Jdk8 (org.jetbrains.kotlin:kotlin-stdlib-jdk8:1.5.31 - https://kotlinlang.org/) + (Eclipse Public License v2.0) JUnit Jupiter (Aggregator) (org.junit.jupiter:junit-jupiter:5.14.2 - https://junit.org/) + (Eclipse Public License v2.0) JUnit Jupiter API (org.junit.jupiter:junit-jupiter-api:5.14.2 - https://junit.org/) + (Eclipse Public License v2.0) JUnit Jupiter Engine (org.junit.jupiter:junit-jupiter-engine:5.14.2 - https://junit.org/) + (Eclipse Public License v2.0) JUnit Jupiter Params (org.junit.jupiter:junit-jupiter-params:5.14.2 - https://junit.org/) + (Eclipse Public License v2.0) JUnit Platform Commons (org.junit.platform:junit-platform-commons:1.14.2 - https://junit.org/) + (Eclipse Public License v2.0) JUnit Platform Engine API (org.junit.platform:junit-platform-engine:1.14.2 - https://junit.org/) + (Eclipse Public License v2.0) JUnit Vintage Engine (org.junit.vintage:junit-vintage-engine:5.14.2 - https://junit.org/) + (Apache License 2.0) JVM Integration for Metrics (io.dropwizard.metrics:metrics-jvm:4.2.38 - https://metrics.dropwizard.io/metrics-jvm) + (The Apache License, Version 2.0) Kotlin Stdlib (org.jetbrains.kotlin:kotlin-stdlib:1.9.10 - https://kotlinlang.org/) + (The Apache License, Version 2.0) Kotlin Stdlib Common (org.jetbrains.kotlin:kotlin-stdlib-common:1.9.10 - https://kotlinlang.org/) + (The Apache License, Version 2.0) Kotlin Stdlib Jdk7 (org.jetbrains.kotlin:kotlin-stdlib-jdk7:1.9.10 - https://kotlinlang.org/) + (The Apache License, Version 2.0) Kotlin Stdlib Jdk8 (org.jetbrains.kotlin:kotlin-stdlib-jdk8:1.9.10 - https://kotlinlang.org/) (The Apache Software License, Version 2.0) lang-mustache (org.elasticsearch.plugin:lang-mustache-client:7.10.2 - https://github.com/elastic/elasticsearch) (WDL License https://github.com/openwdl/wdl/blob/master/LICENSE) language-factory-core (org.broadinstitute:language-factory-core_2.13:85 - no url defined) (Apache License, Version 2.0) Liquibase (org.liquibase:liquibase-core:4.33.0 - http://www.liquibase.com) (MIT License) liquibase-slf4j (com.mattbertolini:liquibase-slf4j:5.1.0 - https://github.com/mattbertolini/liquibase-slf4j) (Apache-2.0) Log4j Implemented Over SLF4J (org.slf4j:log4j-over-slf4j:2.0.17 - http://www.slf4j.org) - (Eclipse Public License - v 1.0) (GNU Lesser General Public License) Logback Access Common Module (ch.qos.logback.access:logback-access-common:2.0.6 - http://logback.qos.ch/logback-access-common) - (Eclipse Public License - v 1.0) (GNU Lesser General Public License) Logback Access Jetty 12 Module (ch.qos.logback.access:logback-access-jetty12:2.0.6 - http://logback.qos.ch/logback-access-jetty12) - (Eclipse Public License - v 1.0) (GNU Lesser General Public License) Logback Classic Module (ch.qos.logback:logback-classic:1.5.19 - http://logback.qos.ch/logback-classic) - (Eclipse Public License - v 1.0) (GNU Lesser General Public License) Logback Core Module (ch.qos.logback:logback-core:1.5.19 - http://logback.qos.ch/logback-core) + (Eclipse Public License - v 1.0) (GNU Lesser General Public License) Logback Access Common Module (ch.qos.logback.access:logback-access-common:2.0.9 - http://logback.qos.ch/logback-access-common) + (Eclipse Public License - v 1.0) (GNU Lesser General Public License) Logback Access Jetty 12 Module (ch.qos.logback.access:logback-access-jetty12:2.0.9 - http://logback.qos.ch/logback-access-jetty12) + (Eclipse Public License - v 1.0) (GNU Lesser General Public License) Logback Classic Module (ch.qos.logback:logback-classic:1.5.26 - http://logback.qos.ch/logback-classic) + (Eclipse Public License - v 1.0) (GNU Lesser General Public License) Logback Core Module (ch.qos.logback:logback-core:1.5.26 - http://logback.qos.ch/logback-core) (Apache License, Version 2.0) (MIT License) Logstash Logback Encoder (net.logstash.logback:logstash-logback-encoder:4.11 - https://github.com/logstash/logstash-logback-encoder) (Apache License, Version 2.0) Lucene Core (org.apache.lucene:lucene-core:8.7.0 - https://lucene.apache.org/lucene-parent/lucene-core) - (Apache License 2.0) Metrics Core (io.dropwizard.metrics:metrics-core:4.2.37 - https://metrics.dropwizard.io/metrics-core) - (Apache License 2.0) Metrics Health Checks (io.dropwizard.metrics:metrics-healthchecks:4.2.37 - https://metrics.dropwizard.io/metrics-healthchecks) - (Apache License 2.0) Metrics Integration for Apache HttpClient 5.x (io.dropwizard.metrics:metrics-httpclient5:4.2.37 - https://metrics.dropwizard.io/metrics-httpclient5) - (Apache License 2.0) Metrics Integration for Caffeine 2.x (io.dropwizard.metrics:metrics-caffeine:4.2.37 - https://metrics.dropwizard.io/metrics-caffeine) - (Apache License 2.0) Metrics Integration for JDBI3 (io.dropwizard.metrics:metrics-jdbi3:4.2.37 - https://metrics.dropwizard.io/metrics-jdbi3) - (Apache License 2.0) Metrics Integration for Jersey 3.x (io.dropwizard.metrics:metrics-jersey3:4.2.37 - https://metrics.dropwizard.io/metrics-jersey3) - (Apache License 2.0) Metrics Integration for Jetty 12.x and higher (io.dropwizard.metrics:metrics-jetty12:4.2.37 - https://metrics.dropwizard.io/metrics-jetty12) - (Apache License 2.0) Metrics Integration for Jetty 12.x and higher with Jakarta EE 10 (io.dropwizard.metrics:metrics-jetty12-ee10:4.2.37 - https://metrics.dropwizard.io/metrics-jetty12-ee10) - (Apache License 2.0) Metrics Integration for Logback (io.dropwizard.metrics:metrics-logback:4.2.37 - https://metrics.dropwizard.io/metrics-logback) - (Apache License 2.0) Metrics Integration with JMX (io.dropwizard.metrics:metrics-jmx:4.2.37 - https://metrics.dropwizard.io/metrics-jmx) - (Apache License 2.0) Metrics Utility Jakarta Servlets (io.dropwizard.metrics:metrics-jakarta-servlets:4.2.37 - https://metrics.dropwizard.io/metrics-jakarta-servlets) + (Apache License 2.0) Metrics Core (io.dropwizard.metrics:metrics-core:4.2.38 - https://metrics.dropwizard.io/metrics-core) + (Apache License 2.0) Metrics Health Checks (io.dropwizard.metrics:metrics-healthchecks:4.2.38 - https://metrics.dropwizard.io/metrics-healthchecks) + (Apache License 2.0) Metrics Integration for Apache HttpClient 5.x (io.dropwizard.metrics:metrics-httpclient5:4.2.38 - https://metrics.dropwizard.io/metrics-httpclient5) + (Apache License 2.0) Metrics Integration for Caffeine 2.x (io.dropwizard.metrics:metrics-caffeine:4.2.38 - https://metrics.dropwizard.io/metrics-caffeine) + (Apache License 2.0) Metrics Integration for JDBI3 (io.dropwizard.metrics:metrics-jdbi3:4.2.38 - https://metrics.dropwizard.io/metrics-jdbi3) + (Apache License 2.0) Metrics Integration for Jersey 3.x (io.dropwizard.metrics:metrics-jersey3:4.2.38 - https://metrics.dropwizard.io/metrics-jersey3) + (Apache License 2.0) Metrics Integration for Jetty 12.x and higher (io.dropwizard.metrics:metrics-jetty12:4.2.38 - https://metrics.dropwizard.io/metrics-jetty12) + (Apache License 2.0) Metrics Integration for Jetty 12.x and higher with Jakarta EE 10 (io.dropwizard.metrics:metrics-jetty12-ee10:4.2.38 - https://metrics.dropwizard.io/metrics-jetty12-ee10) + (Apache License 2.0) Metrics Integration for Logback (io.dropwizard.metrics:metrics-logback:4.2.38 - https://metrics.dropwizard.io/metrics-logback) + (Apache License 2.0) Metrics Integration with JMX (io.dropwizard.metrics:metrics-jmx:4.2.38 - https://metrics.dropwizard.io/metrics-jmx) + (Apache License 2.0) Metrics Utility Jakarta Servlets (io.dropwizard.metrics:metrics-jakarta-servlets:4.2.38 - https://metrics.dropwizard.io/metrics-jakarta-servlets) (The Apache Software License, Version 2.0) metrics3-statsd (com.readytalk:metrics3-statsd:4.2.0 - no url defined) (Apache 2) metrics4-scala (nl.grons:metrics4-scala_2.13:4.2.8 - https://github.com/erikvanoosten/metrics-scala) (Eclipse Distribution License - v 1.0) MIME streaming extension (org.jvnet.mimepull:mimepull:1.9.15 - https://github.com/eclipse-ee4j/metro-mimepull) (The MIT License) mockito-core (org.mockito:mockito-core:3.12.4 - https://github.com/mockito/mockito) (The MIT License) mockito-inline (org.mockito:mockito-inline:3.12.4 - https://github.com/mockito/mockito) - (Apache 2 License) Moneta Core (org.javamoney.moneta:moneta-core:1.4.2 - http://javamoney.org) + (Apache 2 License) Moneta Core (org.javamoney.moneta:moneta-core:1.4.5 - http://javamoney.org) (MIT) mouse (org.typelevel:mouse_2.13:1.0.11 - https://typelevel.org/mouse) (Apache License, Version 2.0) Netty Reactive Streams Implementation (com.typesafe.netty:netty-reactive-streams:2.0.5 - https://github.com/playframework/netty-reactive-streams/netty-reactive-streams) (Apache License, Version 2.0) Netty/Buffer (io.netty:netty-buffer:4.2.5.Final - https://netty.io/netty-buffer/) @@ -348,8 +348,9 @@ Lists of 413 third-party dependencies. (Apache License, Version 2.0) Netty/Transport/Native/KQueue (io.netty:netty-transport-native-kqueue:4.2.5.Final - https://netty.io/netty-transport-native-kqueue/) (Apache License, Version 2.0) Netty/Transport/Native/Unix/Common (io.netty:netty-transport-native-unix-common:4.2.5.Final - https://netty.io/netty-transport-native-unix-common/) (Apache License, Version 2.0) Objenesis (org.objenesis:objenesis:3.2 - http://objenesis.org/objenesis) - (The Apache Software License, Version 2.0) okhttp (com.squareup.okhttp3:okhttp:4.10.0 - https://square.github.io/okhttp/) - (The Apache Software License, Version 2.0) okio (com.squareup.okio:okio-jvm:3.0.0 - https://github.com/square/okio/) + (The Apache Software License, Version 2.0) okhttp (com.squareup.okhttp3:okhttp:4.12.0 - https://square.github.io/okhttp/) + (The Apache Software License, Version 2.0) okio (com.squareup.okio:okio:3.6.0 - https://github.com/square/okio/) + (The Apache Software License, Version 2.0) okio (com.squareup.okio:okio-jvm:3.6.0 - https://github.com/square/okio/) (The Apache License, Version 2.0) OpenCensus (io.opencensus:opencensus-api:0.31.0 - https://github.com/census-instrumentation/opencensus-java) (The Apache License, Version 2.0) OpenCensus (io.opencensus:opencensus-contrib-http-util:0.31.0 - https://github.com/census-instrumentation/opencensus-java) (Apache 2) opencsv (com.opencsv:opencsv:5.11.2 - http://opencsv.sf.net) @@ -406,8 +407,8 @@ Lists of 413 third-party dependencies. (MIT License) System Stubs Core (uk.org.webcompere:system-stubs-core:2.1.7 - https://github.com/webcompere/system-stubs/system-stubs-core/) (MIT License) System Stubs Jupiter (uk.org.webcompere:system-stubs-jupiter:2.1.7 - https://github.com/webcompere/system-stubs/system-stubs-jupiter/) (Apache License 2.0) Throttling Appender (io.dropwizard.logback:logback-throttling-appender:1.5.3 - https://github.com/dropwizard/logback-throttling-appender/) - (Apache License, Version 2.0) tomcat-jdbc (org.apache.tomcat:tomcat-jdbc:11.0.11 - https://tomcat.apache.org/) - (Apache License, Version 2.0) tomcat-juli (org.apache.tomcat:tomcat-juli:11.0.11 - https://tomcat.apache.org/) + (Apache License, Version 2.0) tomcat-jdbc (org.apache.tomcat:tomcat-jdbc:11.0.18 - https://tomcat.apache.org/) + (Apache License, Version 2.0) tomcat-juli (org.apache.tomcat:tomcat-juli:11.0.18 - https://tomcat.apache.org/) (Eclipse Distribution License - v 1.0) TXW2 Runtime (org.glassfish.jaxb:txw2:4.0.2 - https://eclipse-ee4j.github.io/jaxb-ri/) (WDL License https://github.com/openwdl/wdl/blob/master/LICENSE) wdl-biscayne (org.broadinstitute:wdl-biscayne_2.13:85 - no url defined) (WDL License https://github.com/openwdl/wdl/blob/master/LICENSE) wdl-draft2 (org.broadinstitute:wdl-draft2_2.13:85 - no url defined) diff --git a/dockstore-cli-integration-testing/generated/src/main/resources/pom.xml b/dockstore-cli-integration-testing/generated/src/main/resources/pom.xml index 88b4e9102..04ebcd89f 100644 --- a/dockstore-cli-integration-testing/generated/src/main/resources/pom.xml +++ b/dockstore-cli-integration-testing/generated/src/main/resources/pom.xml @@ -36,7 +36,7 @@ io.dockstore dockstore-integration-testing - 1.19.0-alpha.1 + 1.20.0-alpha.0 tests compile @@ -49,7 +49,7 @@ io.dockstore dockstore-common - 1.19.0-alpha.1 + 1.20.0-alpha.0 compile @@ -61,7 +61,7 @@ io.dockstore dockstore-webservice - 1.19.0-alpha.1 + 1.20.0-alpha.0 compile @@ -73,13 +73,13 @@ io.dockstore openapi-java-client - 1.19.0-alpha.1 + 1.20.0-alpha.0 compile io.dropwizard dropwizard-jdbi3 - 5.0.0 + 5.0.1 compile @@ -97,21 +97,21 @@ ch.qos.logback logback-classic - 1.5.19 + 1.5.26 runtime true ch.qos.logback logback-core - 1.5.19 + 1.5.26 runtime true com.fasterxml.jackson.dataformat jackson-dataformat-cbor - 2.20.0 + 2.21.0 compile diff --git a/dockstore-cli-reports/generated/src/main/resources/pom.xml b/dockstore-cli-reports/generated/src/main/resources/pom.xml index 31b015c53..6bfa25ea5 100644 --- a/dockstore-cli-reports/generated/src/main/resources/pom.xml +++ b/dockstore-cli-reports/generated/src/main/resources/pom.xml @@ -30,13 +30,13 @@ io.dockstore dockstore-webservice - 1.19.0-alpha.1 + 1.20.0-alpha.0 compile io.dockstore dockstore-common - 1.19.0-alpha.1 + 1.20.0-alpha.0 compile diff --git a/dockstore-client/generated/src/main/resources/pom.xml b/dockstore-client/generated/src/main/resources/pom.xml index 820c01867..f44793eed 100644 --- a/dockstore-client/generated/src/main/resources/pom.xml +++ b/dockstore-client/generated/src/main/resources/pom.xml @@ -66,7 +66,7 @@ io.dockstore dockstore-common - 1.19.0-alpha.1 + 1.20.0-alpha.0 compile @@ -82,7 +82,7 @@ io.dockstore openapi-java-client - 1.19.0-alpha.1 + 1.20.0-alpha.0 compile @@ -106,7 +106,7 @@ org.apache.commons commons-lang3 - 3.18.0 + 3.20.0 compile @@ -118,7 +118,7 @@ com.google.guava guava - 33.4.8-jre + 33.5.0-jre compile @@ -142,25 +142,25 @@ org.apache.commons commons-text - 1.14.0 + 1.15.0 compile com.fasterxml.jackson.core jackson-databind - 2.20.0 + 2.21.0 compile com.fasterxml.jackson.jaxrs jackson-jaxrs-base - 2.20.0 + 2.21.0 compile com.fasterxml.jackson.core jackson-core - 2.20.0 + 2.21.0 compile @@ -228,7 +228,7 @@ ch.qos.logback logback-classic - 1.5.19 + 1.5.26 compile true @@ -301,7 +301,7 @@ org.apache.httpcomponents.client5 httpclient5 - 5.5 + 5.5.2 compile diff --git a/dockstore-file-plugin-parent/generated/src/main/resources/pom.xml b/dockstore-file-plugin-parent/generated/src/main/resources/pom.xml index 9234e3a5a..5bff3b670 100644 --- a/dockstore-file-plugin-parent/generated/src/main/resources/pom.xml +++ b/dockstore-file-plugin-parent/generated/src/main/resources/pom.xml @@ -36,7 +36,7 @@ org.apache.commons commons-lang3 - 3.18.0 + 3.20.0 compile diff --git a/openapi-java-wes-client/generated/src/main/resources/pom.xml b/openapi-java-wes-client/generated/src/main/resources/pom.xml index 4552a3fd3..c5480972d 100644 --- a/openapi-java-wes-client/generated/src/main/resources/pom.xml +++ b/openapi-java-wes-client/generated/src/main/resources/pom.xml @@ -60,19 +60,19 @@ com.fasterxml.jackson.core jackson-core - 2.20.0 + 2.21.0 compile com.fasterxml.jackson.core jackson-annotations - 2.20 + 2.21 compile com.fasterxml.jackson.core jackson-databind - 2.20.0 + 2.21.0 compile @@ -90,7 +90,7 @@ com.fasterxml.jackson.datatype jackson-datatype-jsr310 - 2.20.0 + 2.21.0 compile diff --git a/pom.xml b/pom.xml index 9f3095bdd..f7394a506 100644 --- a/pom.xml +++ b/pom.xml @@ -38,7 +38,7 @@ scm:git:git@github.com:dockstore/dockstore-cli.git UTF-8 - 1.19.0-alpha.1 + 1.20.0-alpha.0 2.22.2 2.22.2 false @@ -226,7 +226,7 @@ maven-compiler-plugin 3.10.1 - 17 + 21 true @@ -269,7 +269,7 @@ org.apache.maven.plugins maven-dependency-plugin - 3.3.0 + 3.6.1 org.apache.maven.plugins @@ -529,7 +529,7 @@ 3.8.1 - [17.0,22.0) + [21.0,22.0) @@ -599,7 +599,7 @@ org.apache.maven.plugins maven-compiler-plugin - 17 + 21 @@ -681,9 +681,9 @@ net.revelc.code impsort-maven-plugin - 1.8.0 + 1.12.0 - 17 + 21 @@ -752,7 +752,7 @@ org.sonarsource.scanner.maven sonar-maven-plugin - 3.9.1.2184 + 5.5.0.6356 diff --git a/support/generated/src/main/resources/pom.xml b/support/generated/src/main/resources/pom.xml index 284246bf4..6ad80ba6d 100644 --- a/support/generated/src/main/resources/pom.xml +++ b/support/generated/src/main/resources/pom.xml @@ -69,10 +69,16 @@ 2.31.56 compile + + software.amazon.awssdk + aws-core + 2.31.56 + compile + com.google.guava guava - 33.4.8-jre + 33.5.0-jre compile diff --git a/support/pom.xml b/support/pom.xml index 12a9fa2f5..423d4f1c2 100644 --- a/support/pom.xml +++ b/support/pom.xml @@ -157,6 +157,11 @@ rds compile + + software.amazon.awssdk + aws-core + +