diff --git a/org.eclipse.dawnsci.feature/feature.xml b/org.eclipse.dawnsci.feature/feature.xml index dd7a57a4..a00b39e2 100644 --- a/org.eclipse.dawnsci.feature/feature.xml +++ b/org.eclipse.dawnsci.feature/feature.xml @@ -1,133 +1,140 @@ - - - - - [Enter Feature Description here.] - - - - [Enter Copyright Description here.] - - - - [Enter License Description here.] - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - + + + + + [Enter Feature Description here.] + + + + [Enter Copyright Description here.] + + + + [Enter License Description here.] + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/org.eclipse.dawnsci.hdf.object.test/.classpath b/org.eclipse.dawnsci.hdf.object.test/.classpath new file mode 100644 index 00000000..eca7bdba --- /dev/null +++ b/org.eclipse.dawnsci.hdf.object.test/.classpath @@ -0,0 +1,7 @@ + + + + + + + diff --git a/org.eclipse.dawnsci.hdf.object.test/.gitignore b/org.eclipse.dawnsci.hdf.object.test/.gitignore new file mode 100644 index 00000000..4df297aa --- /dev/null +++ b/org.eclipse.dawnsci.hdf.object.test/.gitignore @@ -0,0 +1,44 @@ +### Temporary files ### +*.bak +*.swp +*.tmp +*.*~ + +### Java ### +*.class +hs_err_pid* +derby.log + +### Python / Jython ### +__pycache__/ +*.py[cod] +jythonCache/ +cachedir/ + +### Build output ### +.springBeans +/bin/ +/classes/ +/src/corba/ + +### JUnit testing ### +/activemq-data +/test-reports +/test-scratch + +### Security files ### +*.ppk +*ssh.key +id_rsa +password +passwords + +### Various OS, etc. files ### +*.lnk +.DS_Store +[Dd]esktop.ini +.nfs[0-9A-Fa-f][0-9A-Fa-f][0-9A-Fa-f][0-9A-Fa-f][0-9A-Fa-f][0-9A-Fa-f][0-9A-Fa-f][0-9A-Fa-f][0-9A-Fa-f]* +.svn/ +Thumbs.db +$RECYCLE.BIN/ +.Trash-* diff --git a/org.eclipse.dawnsci.hdf.object.test/.project b/org.eclipse.dawnsci.hdf.object.test/.project new file mode 100644 index 00000000..1a3d5bf1 --- /dev/null +++ b/org.eclipse.dawnsci.hdf.object.test/.project @@ -0,0 +1,28 @@ + + + org.eclipse.dawnsci.hdf.object.test + + + + + + org.eclipse.jdt.core.javabuilder + + + + + org.eclipse.pde.ManifestBuilder + + + + + org.eclipse.pde.SchemaBuilder + + + + + + org.eclipse.pde.PluginNature + org.eclipse.jdt.core.javanature + + diff --git a/org.eclipse.dawnsci.hdf.object.test/.settings/org.eclipse.jdt.core.prefs b/org.eclipse.dawnsci.hdf.object.test/.settings/org.eclipse.jdt.core.prefs new file mode 100644 index 00000000..0c68a61d --- /dev/null +++ b/org.eclipse.dawnsci.hdf.object.test/.settings/org.eclipse.jdt.core.prefs @@ -0,0 +1,7 @@ +eclipse.preferences.version=1 +org.eclipse.jdt.core.compiler.codegen.inlineJsrBytecode=enabled +org.eclipse.jdt.core.compiler.codegen.targetPlatform=1.8 +org.eclipse.jdt.core.compiler.compliance=1.8 +org.eclipse.jdt.core.compiler.problem.assertIdentifier=error +org.eclipse.jdt.core.compiler.problem.enumIdentifier=error +org.eclipse.jdt.core.compiler.source=1.8 diff --git a/org.eclipse.dawnsci.hdf.object.test/JUnit-org.eclipse.dawnsci.hdf.object.test.launch b/org.eclipse.dawnsci.hdf.object.test/JUnit-org.eclipse.dawnsci.hdf.object.test.launch new file mode 100644 index 00000000..24013506 --- /dev/null +++ b/org.eclipse.dawnsci.hdf.object.test/JUnit-org.eclipse.dawnsci.hdf.object.test.launch @@ -0,0 +1,19 @@ + + + + + + + + + + + + + + + + + + + diff --git a/org.eclipse.dawnsci.hdf.object.test/License.htm b/org.eclipse.dawnsci.hdf.object.test/License.htm new file mode 100644 index 00000000..9c0feb7a --- /dev/null +++ b/org.eclipse.dawnsci.hdf.object.test/License.htm @@ -0,0 +1,259 @@ + + + + +Eclipse Public License - Version 1.0 + + + + + + +

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THE ACCOMPANYING PROGRAM IS PROVIDED UNDER THE TERMS OF THIS ECLIPSE +PUBLIC LICENSE ("AGREEMENT"). ANY USE, REPRODUCTION OR +DISTRIBUTION OF THE PROGRAM CONSTITUTES RECIPIENT'S ACCEPTANCE OF THIS +AGREEMENT.

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+ +

This Agreement is governed by the laws of the State of New York and +the intellectual property laws of the United States of America. No party +to this Agreement will bring a legal action under this Agreement more +than one year after the cause of action arose. Each party waives its +rights to a jury trial in any resulting litigation.

+ + + + \ No newline at end of file diff --git a/org.eclipse.dawnsci.hdf.object.test/META-INF/MANIFEST.MF b/org.eclipse.dawnsci.hdf.object.test/META-INF/MANIFEST.MF new file mode 100644 index 00000000..48431fe0 --- /dev/null +++ b/org.eclipse.dawnsci.hdf.object.test/META-INF/MANIFEST.MF @@ -0,0 +1,10 @@ +Manifest-Version: 1.0 +Bundle-ManifestVersion: 2 +Bundle-Name: DAWNSci HDF Object Test +Bundle-SymbolicName: org.eclipse.dawnsci.hdf.object.test +Bundle-Version: 1.2.0.qualifier +Bundle-Vendor: Diamond Light Source +Fragment-Host: org.eclipse.dawnsci.hdf.object;bundle-version="1.3.0" +Bundle-RequiredExecutionEnvironment: JavaSE-1.8 +Require-Bundle: org.junit +Bundle-ActivationPolicy: lazy diff --git a/org.eclipse.dawnsci.hdf.object.test/build.properties b/org.eclipse.dawnsci.hdf.object.test/build.properties new file mode 100644 index 00000000..8c210215 --- /dev/null +++ b/org.eclipse.dawnsci.hdf.object.test/build.properties @@ -0,0 +1,5 @@ +source.. = src/ +output.. = bin/ +bin.includes = META-INF/,\ + .,\ + testfiles/ diff --git a/org.eclipse.dawnsci.hdf.object.test/pom.xml b/org.eclipse.dawnsci.hdf.object.test/pom.xml new file mode 100644 index 00000000..bd85de6f --- /dev/null +++ b/org.eclipse.dawnsci.hdf.object.test/pom.xml @@ -0,0 +1,20 @@ + + + 4.0.0 + + org.eclipse.dawnsci + org.eclipse + 1.0.0-SNAPSHOT + + org.eclipse + org.eclipse.dawnsci.hdf.object.test + 1.2.0-SNAPSHOT + eclipse-plugin + + + bin + + + diff --git a/org.eclipse.dawnsci.hdf.object.test/releng.ant b/org.eclipse.dawnsci.hdf.object.test/releng.ant new file mode 100644 index 00000000..4dccabf3 --- /dev/null +++ b/org.eclipse.dawnsci.hdf.object.test/releng.ant @@ -0,0 +1,49 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/org.eclipse.dawnsci.hdf.object.test/src/org/eclipse/dawnsci/hdf/object/AbstractThreadTestBase.java b/org.eclipse.dawnsci.hdf.object.test/src/org/eclipse/dawnsci/hdf/object/AbstractThreadTestBase.java new file mode 100644 index 00000000..41b5e4cf --- /dev/null +++ b/org.eclipse.dawnsci.hdf.object.test/src/org/eclipse/dawnsci/hdf/object/AbstractThreadTestBase.java @@ -0,0 +1,90 @@ +/*- + ******************************************************************************* + * Copyright (c) 2011, 2017 Diamond Light Source Ltd. + * All rights reserved. This program and the accompanying materials + * are made available under the terms of the Eclipse Public License v1.0 + * which accompanies this distribution, and is available at + * http://www.eclipse.org/legal/epl-v10.html + * + * Contributors: + * Matthew Gerring - initial API and implementation and/or initial documentation + *******************************************************************************/ + +package org.eclipse.dawnsci.hdf.object; + +/** + * Class to extend, does not have any tests itself. + */ +public abstract class AbstractThreadTestBase { + + public void testInTestThread() throws Throwable { + doTestOfDataSet(0); + + System.out.println("One thread passed."); + } + + protected abstract void doTestOfDataSet(int index) throws Throwable; + + private Throwable exception; + + /** + * Test shows that nexus API cannot handle threads. + * + * @throws Exception + */ + public void testWithTenThreads() throws Throwable { + + testWithNThreads(10); + } + + /** + * Start threads that each run {@link #doTestOfDataSet(int)} + * + * @param threadNumber + * @throws Throwable + */ + protected void testWithNThreads(int threadNumber) throws Throwable { + + exception = null; + + final boolean[] done = new boolean[threadNumber]; + final Thread[] threads = new Thread[threadNumber]; + for (int i = 0; i < threads.length; i++) { + final int index = i; + threads[i] = new Thread(new Runnable() { + @Override + public void run() { + done[index] = false; + try { + doTestOfDataSet(index); + } catch (Throwable e) { + exception = e; + } finally { + done[index] = true; + } + } + }); + } + + for (int i = 0; i < threads.length; i++) { + threads[i].start(); + } + + // Wait for them to do their thing. + WHILE_LOOP: while (true) { + for (boolean d : done) { + if (!d) { + Thread.sleep(1000); + continue WHILE_LOOP; + } + } + break; + } + + if (exception != null) + throw exception; + + System.out.println(threadNumber + " threads passed."); + } + +} diff --git a/org.eclipse.dawnsci.hdf5.test/src/org/eclipse/dawnsci/hdf/object/Hdf5Test.java b/org.eclipse.dawnsci.hdf.object.test/src/org/eclipse/dawnsci/hdf/object/Hdf5Test.java similarity index 99% rename from org.eclipse.dawnsci.hdf5.test/src/org/eclipse/dawnsci/hdf/object/Hdf5Test.java rename to org.eclipse.dawnsci.hdf.object.test/src/org/eclipse/dawnsci/hdf/object/Hdf5Test.java index d8b99698..1e9df884 100644 --- a/org.eclipse.dawnsci.hdf5.test/src/org/eclipse/dawnsci/hdf/object/Hdf5Test.java +++ b/org.eclipse.dawnsci.hdf.object.test/src/org/eclipse/dawnsci/hdf/object/Hdf5Test.java @@ -1,6 +1,6 @@ /*- ******************************************************************************* - * Copyright (c) 2011, 2014 Diamond Light Source Ltd. + * Copyright (c) 2011, 2017 Diamond Light Source Ltd. * All rights reserved. This program and the accompanying materials * are made available under the terms of the Eclipse Public License v1.0 * which accompanies this distribution, and is available at diff --git a/org.eclipse.dawnsci.hdf5.test/src/org/eclipse/dawnsci/hdf/object/Hdf5ThreadTest.java b/org.eclipse.dawnsci.hdf.object.test/src/org/eclipse/dawnsci/hdf/object/Hdf5ThreadTest.java similarity index 95% rename from org.eclipse.dawnsci.hdf5.test/src/org/eclipse/dawnsci/hdf/object/Hdf5ThreadTest.java rename to org.eclipse.dawnsci.hdf.object.test/src/org/eclipse/dawnsci/hdf/object/Hdf5ThreadTest.java index d35d66be..5e74afea 100644 --- a/org.eclipse.dawnsci.hdf5.test/src/org/eclipse/dawnsci/hdf/object/Hdf5ThreadTest.java +++ b/org.eclipse.dawnsci.hdf.object.test/src/org/eclipse/dawnsci/hdf/object/Hdf5ThreadTest.java @@ -1,6 +1,6 @@ /*- ******************************************************************************* - * Copyright (c) 2011, 2014 Diamond Light Source Ltd. + * Copyright (c) 2011, 2017 Diamond Light Source Ltd. * All rights reserved. This program and the accompanying materials * are made available under the terms of the Eclipse Public License v1.0 * which accompanies this distribution, and is available at @@ -13,7 +13,6 @@ import java.io.File; -import org.eclipse.dawnsci.hdf5.AbstractThreadTestBase; import org.junit.After; import org.junit.Test; diff --git a/org.eclipse.dawnsci.hdf5.test/src/org/eclipse/dawnsci/hdf/object/HierarchicalDataUtilsTest.java b/org.eclipse.dawnsci.hdf.object.test/src/org/eclipse/dawnsci/hdf/object/HierarchicalDataUtilsTest.java similarity index 99% rename from org.eclipse.dawnsci.hdf5.test/src/org/eclipse/dawnsci/hdf/object/HierarchicalDataUtilsTest.java rename to org.eclipse.dawnsci.hdf.object.test/src/org/eclipse/dawnsci/hdf/object/HierarchicalDataUtilsTest.java index 25bdbc4b..b87d3c8f 100644 --- a/org.eclipse.dawnsci.hdf5.test/src/org/eclipse/dawnsci/hdf/object/HierarchicalDataUtilsTest.java +++ b/org.eclipse.dawnsci.hdf.object.test/src/org/eclipse/dawnsci/hdf/object/HierarchicalDataUtilsTest.java @@ -1,6 +1,6 @@ /*- ******************************************************************************* - * Copyright (c) 2011, 2014 Diamond Light Source Ltd. + * Copyright (c) 2011, 2017 Diamond Light Source Ltd. * All rights reserved. This program and the accompanying materials * are made available under the terms of the Eclipse Public License v1.0 * which accompanies this distribution, and is available at diff --git a/org.eclipse.dawnsci.hdf5.test/src/org/eclipse/dawnsci/hdf/object/ReadThreadTest.java b/org.eclipse.dawnsci.hdf.object.test/src/org/eclipse/dawnsci/hdf/object/ReadThreadTest.java similarity index 96% rename from org.eclipse.dawnsci.hdf5.test/src/org/eclipse/dawnsci/hdf/object/ReadThreadTest.java rename to org.eclipse.dawnsci.hdf.object.test/src/org/eclipse/dawnsci/hdf/object/ReadThreadTest.java index a5a07d3a..7cb79ae9 100644 --- a/org.eclipse.dawnsci.hdf5.test/src/org/eclipse/dawnsci/hdf/object/ReadThreadTest.java +++ b/org.eclipse.dawnsci.hdf.object.test/src/org/eclipse/dawnsci/hdf/object/ReadThreadTest.java @@ -1,5 +1,5 @@ /*- - * Copyright 2015 Diamond Light Source Ltd. + * Copyright 2015, 2017 Diamond Light Source Ltd. * * All rights reserved. This program and the accompanying materials * are made available under the terms of the Eclipse Public License v1.0 @@ -11,7 +11,6 @@ import java.util.Arrays; -import org.eclipse.dawnsci.hdf5.AbstractThreadTestBase; import org.eclipse.dawnsci.hdf5.HDF5File; import org.eclipse.dawnsci.hdf5.HDF5FileFactory; import org.eclipse.dawnsci.hdf5.HDF5Utils; diff --git a/org.eclipse.dawnsci.hdf5.test/testfiles/FeKedge_1_15.nxs b/org.eclipse.dawnsci.hdf.object.test/testfiles/FeKedge_1_15.nxs similarity index 100% rename from org.eclipse.dawnsci.hdf5.test/testfiles/FeKedge_1_15.nxs rename to org.eclipse.dawnsci.hdf.object.test/testfiles/FeKedge_1_15.nxs diff --git a/org.eclipse.dawnsci.hdf.object/.classpath b/org.eclipse.dawnsci.hdf.object/.classpath new file mode 100644 index 00000000..eca7bdba --- /dev/null +++ b/org.eclipse.dawnsci.hdf.object/.classpath @@ -0,0 +1,7 @@ + + + + + + + diff --git a/org.eclipse.dawnsci.hdf.object/.gitignore b/org.eclipse.dawnsci.hdf.object/.gitignore new file mode 100644 index 00000000..4df297aa --- /dev/null +++ b/org.eclipse.dawnsci.hdf.object/.gitignore @@ -0,0 +1,44 @@ +### Temporary files ### +*.bak +*.swp +*.tmp +*.*~ + +### Java ### +*.class +hs_err_pid* +derby.log + +### Python / Jython ### +__pycache__/ +*.py[cod] +jythonCache/ +cachedir/ + +### Build output ### +.springBeans +/bin/ +/classes/ +/src/corba/ + +### JUnit testing ### +/activemq-data +/test-reports +/test-scratch + +### Security files ### +*.ppk +*ssh.key +id_rsa +password +passwords + +### Various OS, etc. files ### +*.lnk +.DS_Store +[Dd]esktop.ini +.nfs[0-9A-Fa-f][0-9A-Fa-f][0-9A-Fa-f][0-9A-Fa-f][0-9A-Fa-f][0-9A-Fa-f][0-9A-Fa-f][0-9A-Fa-f][0-9A-Fa-f]* +.svn/ +Thumbs.db +$RECYCLE.BIN/ +.Trash-* diff --git a/org.eclipse.dawnsci.hdf.object/.project b/org.eclipse.dawnsci.hdf.object/.project new file mode 100644 index 00000000..cc1022e5 --- /dev/null +++ b/org.eclipse.dawnsci.hdf.object/.project @@ -0,0 +1,28 @@ + + + org.eclipse.dawnsci.hdf.object + + + + + + org.eclipse.jdt.core.javabuilder + + + + + org.eclipse.pde.ManifestBuilder + + + + + org.eclipse.pde.SchemaBuilder + + + + + + org.eclipse.pde.PluginNature + org.eclipse.jdt.core.javanature + + diff --git a/org.eclipse.dawnsci.hdf.object/.settings/org.eclipse.jdt.core.prefs b/org.eclipse.dawnsci.hdf.object/.settings/org.eclipse.jdt.core.prefs new file mode 100644 index 00000000..0c68a61d --- /dev/null +++ b/org.eclipse.dawnsci.hdf.object/.settings/org.eclipse.jdt.core.prefs @@ -0,0 +1,7 @@ +eclipse.preferences.version=1 +org.eclipse.jdt.core.compiler.codegen.inlineJsrBytecode=enabled +org.eclipse.jdt.core.compiler.codegen.targetPlatform=1.8 +org.eclipse.jdt.core.compiler.compliance=1.8 +org.eclipse.jdt.core.compiler.problem.assertIdentifier=error +org.eclipse.jdt.core.compiler.problem.enumIdentifier=error +org.eclipse.jdt.core.compiler.source=1.8 diff --git a/org.eclipse.dawnsci.hdf.object/License.htm b/org.eclipse.dawnsci.hdf.object/License.htm new file mode 100644 index 00000000..9c0feb7a --- /dev/null +++ b/org.eclipse.dawnsci.hdf.object/License.htm @@ -0,0 +1,259 @@ + + + + +Eclipse Public License - Version 1.0 + + + + + + +

Eclipse Public License - v 1.0

+ +

THE ACCOMPANYING PROGRAM IS PROVIDED UNDER THE TERMS OF THIS ECLIPSE +PUBLIC LICENSE ("AGREEMENT"). ANY USE, REPRODUCTION OR +DISTRIBUTION OF THE PROGRAM CONSTITUTES RECIPIENT'S ACCEPTANCE OF THIS +AGREEMENT.

+ +

1. DEFINITIONS

+ +

"Contribution" means:

+ +

a) in the case of the initial Contributor, the initial +code and documentation distributed under this Agreement, and

+

b) in the case of each subsequent Contributor:

+

i) changes to the Program, and

+

ii) additions to the Program;

+

where such changes and/or additions to the Program +originate from and are distributed by that particular Contributor. A +Contribution 'originates' from a Contributor if it was added to the +Program by such Contributor itself or anyone acting on such +Contributor's behalf. Contributions do not include additions to the +Program which: (i) are separate modules of software distributed in +conjunction with the Program under their own license agreement, and (ii) +are not derivative works of the Program.

+ +

"Contributor" means any person or entity that distributes +the Program.

+ +

"Licensed Patents" mean patent claims licensable by a +Contributor which are necessarily infringed by the use or sale of its +Contribution alone or when combined with the Program.

+ +

"Program" means the Contributions distributed in accordance +with this Agreement.

+ +

"Recipient" means anyone who receives the Program under +this Agreement, including all Contributors.

+ +

2. GRANT OF RIGHTS

+ +

a) Subject to the terms of this Agreement, each +Contributor hereby grants Recipient a non-exclusive, worldwide, +royalty-free copyright license to reproduce, prepare derivative works +of, publicly display, publicly perform, distribute and sublicense the +Contribution of such Contributor, if any, and such derivative works, in +source code and object code form.

+ +

b) Subject to the terms of this Agreement, each +Contributor hereby grants Recipient a non-exclusive, worldwide, +royalty-free patent license under Licensed Patents to make, use, sell, +offer to sell, import and otherwise transfer the Contribution of such +Contributor, if any, in source code and object code form. This patent +license shall apply to the combination of the Contribution and the +Program if, at the time the Contribution is added by the Contributor, +such addition of the Contribution causes such combination to be covered +by the Licensed Patents. The patent license shall not apply to any other +combinations which include the Contribution. No hardware per se is +licensed hereunder.

+ +

c) Recipient understands that although each Contributor +grants the licenses to its Contributions set forth herein, no assurances +are provided by any Contributor that the Program does not infringe the +patent or other intellectual property rights of any other entity. Each +Contributor disclaims any liability to Recipient for claims brought by +any other entity based on infringement of intellectual property rights +or otherwise. As a condition to exercising the rights and licenses +granted hereunder, each Recipient hereby assumes sole responsibility to +secure any other intellectual property rights needed, if any. For +example, if a third party patent license is required to allow Recipient +to distribute the Program, it is Recipient's responsibility to acquire +that license before distributing the Program.

+ +

d) Each Contributor represents that to its knowledge it +has sufficient copyright rights in its Contribution, if any, to grant +the copyright license set forth in this Agreement.

+ +

3. REQUIREMENTS

+ +

A Contributor may choose to distribute the Program in object code +form under its own license agreement, provided that:

+ +

a) it complies with the terms and conditions of this +Agreement; and

+ +

b) its license agreement:

+ +

i) effectively disclaims on behalf of all Contributors +all warranties and conditions, express and implied, including warranties +or conditions of title and non-infringement, and implied warranties or +conditions of merchantability and fitness for a particular purpose;

+ +

ii) effectively excludes on behalf of all Contributors +all liability for damages, including direct, indirect, special, +incidental and consequential damages, such as lost profits;

+ +

iii) states that any provisions which differ from this +Agreement are offered by that Contributor alone and not by any other +party; and

+ +

iv) states that source code for the Program is available +from such Contributor, and informs licensees how to obtain it in a +reasonable manner on or through a medium customarily used for software +exchange.

+ +

When the Program is made available in source code form:

+ +

a) it must be made available under this Agreement; and

+ +

b) a copy of this Agreement must be included with each +copy of the Program.

+ +

Contributors may not remove or alter any copyright notices contained +within the Program.

+ +

Each Contributor must identify itself as the originator of its +Contribution, if any, in a manner that reasonably allows subsequent +Recipients to identify the originator of the Contribution.

+ +

4. COMMERCIAL DISTRIBUTION

+ +

Commercial distributors of software may accept certain +responsibilities with respect to end users, business partners and the +like. While this license is intended to facilitate the commercial use of +the Program, the Contributor who includes the Program in a commercial +product offering should do so in a manner which does not create +potential liability for other Contributors. Therefore, if a Contributor +includes the Program in a commercial product offering, such Contributor +("Commercial Contributor") hereby agrees to defend and +indemnify every other Contributor ("Indemnified Contributor") +against any losses, damages and costs (collectively "Losses") +arising from claims, lawsuits and other legal actions brought by a third +party against the Indemnified Contributor to the extent caused by the +acts or omissions of such Commercial Contributor in connection with its +distribution of the Program in a commercial product offering. The +obligations in this section do not apply to any claims or Losses +relating to any actual or alleged intellectual property infringement. In +order to qualify, an Indemnified Contributor must: a) promptly notify +the Commercial Contributor in writing of such claim, and b) allow the +Commercial Contributor to control, and cooperate with the Commercial +Contributor in, the defense and any related settlement negotiations. The +Indemnified Contributor may participate in any such claim at its own +expense.

+ +

For example, a Contributor might include the Program in a commercial +product offering, Product X. That Contributor is then a Commercial +Contributor. If that Commercial Contributor then makes performance +claims, or offers warranties related to Product X, those performance +claims and warranties are such Commercial Contributor's responsibility +alone. Under this section, the Commercial Contributor would have to +defend claims against the other Contributors related to those +performance claims and warranties, and if a court requires any other +Contributor to pay any damages as a result, the Commercial Contributor +must pay those damages.

+ +

5. NO WARRANTY

+ +

EXCEPT AS EXPRESSLY SET FORTH IN THIS AGREEMENT, THE PROGRAM IS +PROVIDED ON AN "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS +OF ANY KIND, EITHER EXPRESS OR IMPLIED INCLUDING, WITHOUT LIMITATION, +ANY WARRANTIES OR CONDITIONS OF TITLE, NON-INFRINGEMENT, MERCHANTABILITY +OR FITNESS FOR A PARTICULAR PURPOSE. Each Recipient is solely +responsible for determining the appropriateness of using and +distributing the Program and assumes all risks associated with its +exercise of rights under this Agreement , including but not limited to +the risks and costs of program errors, compliance with applicable laws, +damage to or loss of data, programs or equipment, and unavailability or +interruption of operations.

+ +

6. DISCLAIMER OF LIABILITY

+ +

EXCEPT AS EXPRESSLY SET FORTH IN THIS AGREEMENT, NEITHER RECIPIENT +NOR ANY CONTRIBUTORS SHALL HAVE ANY LIABILITY FOR ANY DIRECT, INDIRECT, +INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING +WITHOUT LIMITATION LOST PROFITS), HOWEVER CAUSED AND ON ANY THEORY OF +LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING +NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OR +DISTRIBUTION OF THE PROGRAM OR THE EXERCISE OF ANY RIGHTS GRANTED +HEREUNDER, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGES.

+ +

7. GENERAL

+ +

If any provision of this Agreement is invalid or unenforceable under +applicable law, it shall not affect the validity or enforceability of +the remainder of the terms of this Agreement, and without further action +by the parties hereto, such provision shall be reformed to the minimum +extent necessary to make such provision valid and enforceable.

+ +

If Recipient institutes patent litigation against any entity +(including a cross-claim or counterclaim in a lawsuit) alleging that the +Program itself (excluding combinations of the Program with other +software or hardware) infringes such Recipient's patent(s), then such +Recipient's rights granted under Section 2(b) shall terminate as of the +date such litigation is filed.

+ +

All Recipient's rights under this Agreement shall terminate if it +fails to comply with any of the material terms or conditions of this +Agreement and does not cure such failure in a reasonable period of time +after becoming aware of such noncompliance. If all Recipient's rights +under this Agreement terminate, Recipient agrees to cease use and +distribution of the Program as soon as reasonably practicable. However, +Recipient's obligations under this Agreement and any licenses granted by +Recipient relating to the Program shall continue and survive.

+ +

Everyone is permitted to copy and distribute copies of this +Agreement, but in order to avoid inconsistency the Agreement is +copyrighted and may only be modified in the following manner. The +Agreement Steward reserves the right to publish new versions (including +revisions) of this Agreement from time to time. No one other than the +Agreement Steward has the right to modify this Agreement. The Eclipse +Foundation is the initial Agreement Steward. The Eclipse Foundation may +assign the responsibility to serve as the Agreement Steward to a +suitable separate entity. Each new version of the Agreement will be +given a distinguishing version number. The Program (including +Contributions) may always be distributed subject to the version of the +Agreement under which it was received. In addition, after a new version +of the Agreement is published, Contributor may elect to distribute the +Program (including its Contributions) under the new version. Except as +expressly stated in Sections 2(a) and 2(b) above, Recipient receives no +rights or licenses to the intellectual property of any Contributor under +this Agreement, whether expressly, by implication, estoppel or +otherwise. All rights in the Program not expressly granted under this +Agreement are reserved.

+ +

This Agreement is governed by the laws of the State of New York and +the intellectual property laws of the United States of America. No party +to this Agreement will bring a legal action under this Agreement more +than one year after the cause of action arose. Each party waives its +rights to a jury trial in any resulting litigation.

+ + + + \ No newline at end of file diff --git a/org.eclipse.dawnsci.hdf.object/META-INF/MANIFEST.MF b/org.eclipse.dawnsci.hdf.object/META-INF/MANIFEST.MF new file mode 100644 index 00000000..2a0bdb08 --- /dev/null +++ b/org.eclipse.dawnsci.hdf.object/META-INF/MANIFEST.MF @@ -0,0 +1,24 @@ +Manifest-Version: 1.0 +Bundle-ManifestVersion: 2 +Bundle-Name: Dawnsci HDF Object +Bundle-SymbolicName: org.eclipse.dawnsci.hdf.object;singleton:=true +Bundle-Version: 1.3.0.qualifier +Bundle-Vendor: Diamond Light Source +Require-Bundle: hdf.hdf5lib;bundle-version="1.10.1", + hdf.object;bundle-version="2.9.1", + org.eclipse.january;bundle-version="2.0.0", + org.eclipse.dawnsci.analysis.api;bundle-version="1.0.0", + org.eclipse.dawnsci.analysis.dataset;bundle-version="1.0.0", + org.eclipse.dawnsci.analysis.tree;bundle-version="1.0.0", + org.eclipse.dawnsci.nexus;bundle-version="1.0.0", + org.eclipse.osgi;bundle-version="3.8.2", + org.eclipse.osgi.services;bundle-version="3.3.100", + org.eclipse.dawnsci.hdf5 +Bundle-RequiredExecutionEnvironment: JavaSE-1.8 +Bundle-ActivationPolicy: lazy +Bundle-ClassPath: . +Export-Package: org.eclipse.dawnsci.hdf.object, + org.eclipse.dawnsci.hdf.object.nexus, + org.eclipse.dawnsci.hdf.object.operation +Import-Package: org.slf4j;version="[1.7.2,2.0.0)" +Service-Component: OSGI-INF/*.xml diff --git a/org.eclipse.dawnsci.hdf5/OSGI-INF/hierarchicalFileExecutionVisitor.xml b/org.eclipse.dawnsci.hdf.object/OSGI-INF/hierarchicalFileExecutionVisitor.xml similarity index 100% rename from org.eclipse.dawnsci.hdf5/OSGI-INF/hierarchicalFileExecutionVisitor.xml rename to org.eclipse.dawnsci.hdf.object/OSGI-INF/hierarchicalFileExecutionVisitor.xml diff --git a/org.eclipse.dawnsci.hdf.object/buckminster.cspex b/org.eclipse.dawnsci.hdf.object/buckminster.cspex new file mode 100644 index 00000000..b489e3be --- /dev/null +++ b/org.eclipse.dawnsci.hdf.object/buckminster.cspex @@ -0,0 +1,33 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/org.eclipse.dawnsci.hdf.object/build.properties b/org.eclipse.dawnsci.hdf.object/build.properties new file mode 100644 index 00000000..c58ea217 --- /dev/null +++ b/org.eclipse.dawnsci.hdf.object/build.properties @@ -0,0 +1,5 @@ +source.. = src/ +output.. = bin/ +bin.includes = META-INF/,\ + .,\ + OSGI-INF/ diff --git a/org.eclipse.dawnsci.hdf.object/pom.xml b/org.eclipse.dawnsci.hdf.object/pom.xml new file mode 100644 index 00000000..2455344e --- /dev/null +++ b/org.eclipse.dawnsci.hdf.object/pom.xml @@ -0,0 +1,19 @@ + + + 4.0.0 + + org.eclipse.dawnsci + org.eclipse + 1.0.0-SNAPSHOT + + org.eclipse + org.eclipse.dawnsci.hdf.object + 1.3.0-SNAPSHOT + eclipse-plugin + + + bin + + \ No newline at end of file diff --git a/org.eclipse.dawnsci.hdf5/src/org/eclipse/dawnsci/hdf/object/H5Utils.java b/org.eclipse.dawnsci.hdf.object/src/org/eclipse/dawnsci/hdf/object/H5Utils.java similarity index 99% rename from org.eclipse.dawnsci.hdf5/src/org/eclipse/dawnsci/hdf/object/H5Utils.java rename to org.eclipse.dawnsci.hdf.object/src/org/eclipse/dawnsci/hdf/object/H5Utils.java index b9dfc91d..3ef73053 100644 --- a/org.eclipse.dawnsci.hdf5/src/org/eclipse/dawnsci/hdf/object/H5Utils.java +++ b/org.eclipse.dawnsci.hdf.object/src/org/eclipse/dawnsci/hdf/object/H5Utils.java @@ -1,6 +1,6 @@ /*- ******************************************************************************* - * Copyright (c) 2011, 2014 Diamond Light Source Ltd. + * Copyright (c) 2011, 2017 Diamond Light Source Ltd. * All rights reserved. This program and the accompanying materials * are made available under the terms of the Eclipse Public License v1.0 * which accompanies this distribution, and is available at diff --git a/org.eclipse.dawnsci.hdf5/src/org/eclipse/dawnsci/hdf/object/HierarchicalDataFactory.java b/org.eclipse.dawnsci.hdf.object/src/org/eclipse/dawnsci/hdf/object/HierarchicalDataFactory.java similarity index 99% rename from org.eclipse.dawnsci.hdf5/src/org/eclipse/dawnsci/hdf/object/HierarchicalDataFactory.java rename to org.eclipse.dawnsci.hdf.object/src/org/eclipse/dawnsci/hdf/object/HierarchicalDataFactory.java index e268fafd..ac7fe95f 100644 --- a/org.eclipse.dawnsci.hdf5/src/org/eclipse/dawnsci/hdf/object/HierarchicalDataFactory.java +++ b/org.eclipse.dawnsci.hdf.object/src/org/eclipse/dawnsci/hdf/object/HierarchicalDataFactory.java @@ -1,6 +1,6 @@ /*- ******************************************************************************* - * Copyright (c) 2011, 2014 Diamond Light Source Ltd. + * Copyright (c) 2011, 2017 Diamond Light Source Ltd. * All rights reserved. This program and the accompanying materials * are made available under the terms of the Eclipse Public License v1.0 * which accompanies this distribution, and is available at diff --git a/org.eclipse.dawnsci.hdf5/src/org/eclipse/dawnsci/hdf/object/HierarchicalDataFile.java b/org.eclipse.dawnsci.hdf.object/src/org/eclipse/dawnsci/hdf/object/HierarchicalDataFile.java similarity index 99% rename from org.eclipse.dawnsci.hdf5/src/org/eclipse/dawnsci/hdf/object/HierarchicalDataFile.java rename to org.eclipse.dawnsci.hdf.object/src/org/eclipse/dawnsci/hdf/object/HierarchicalDataFile.java index 6f5646a7..62e38298 100644 --- a/org.eclipse.dawnsci.hdf5/src/org/eclipse/dawnsci/hdf/object/HierarchicalDataFile.java +++ b/org.eclipse.dawnsci.hdf.object/src/org/eclipse/dawnsci/hdf/object/HierarchicalDataFile.java @@ -1,6 +1,6 @@ /*- ******************************************************************************* - * Copyright (c) 2011, 2014 Diamond Light Source Ltd. + * Copyright (c) 2011, 2017 Diamond Light Source Ltd. * All rights reserved. This program and the accompanying materials * are made available under the terms of the Eclipse Public License v1.0 * which accompanies this distribution, and is available at diff --git a/org.eclipse.dawnsci.hdf5/src/org/eclipse/dawnsci/hdf/object/HierarchicalDataFileUtils.java b/org.eclipse.dawnsci.hdf.object/src/org/eclipse/dawnsci/hdf/object/HierarchicalDataFileUtils.java similarity index 97% rename from org.eclipse.dawnsci.hdf5/src/org/eclipse/dawnsci/hdf/object/HierarchicalDataFileUtils.java rename to org.eclipse.dawnsci.hdf.object/src/org/eclipse/dawnsci/hdf/object/HierarchicalDataFileUtils.java index 76ffb119..6d066d6d 100644 --- a/org.eclipse.dawnsci.hdf5/src/org/eclipse/dawnsci/hdf/object/HierarchicalDataFileUtils.java +++ b/org.eclipse.dawnsci.hdf.object/src/org/eclipse/dawnsci/hdf/object/HierarchicalDataFileUtils.java @@ -1,6 +1,6 @@ /*- ******************************************************************************* - * Copyright (c) 2011, 2014 Diamond Light Source Ltd. + * Copyright (c) 2011, 2017 Diamond Light Source Ltd. * All rights reserved. This program and the accompanying materials * are made available under the terms of the Eclipse Public License v1.0 * which accompanies this distribution, and is available at diff --git a/org.eclipse.dawnsci.hdf5/src/org/eclipse/dawnsci/hdf/object/HierarchicalDataUtils.java b/org.eclipse.dawnsci.hdf.object/src/org/eclipse/dawnsci/hdf/object/HierarchicalDataUtils.java similarity index 99% rename from org.eclipse.dawnsci.hdf5/src/org/eclipse/dawnsci/hdf/object/HierarchicalDataUtils.java rename to org.eclipse.dawnsci.hdf.object/src/org/eclipse/dawnsci/hdf/object/HierarchicalDataUtils.java index 4686b2d6..7c3bd303 100644 --- a/org.eclipse.dawnsci.hdf5/src/org/eclipse/dawnsci/hdf/object/HierarchicalDataUtils.java +++ b/org.eclipse.dawnsci.hdf.object/src/org/eclipse/dawnsci/hdf/object/HierarchicalDataUtils.java @@ -1,6 +1,6 @@ /*- ******************************************************************************* - * Copyright (c) 2011, 2014 Diamond Light Source Ltd. + * Copyright (c) 2011, 2017 Diamond Light Source Ltd. * All rights reserved. This program and the accompanying materials * are made available under the terms of the Eclipse Public License v1.0 * which accompanies this distribution, and is available at diff --git a/org.eclipse.dawnsci.hdf5/src/org/eclipse/dawnsci/hdf/object/HierarchicalInfo.java b/org.eclipse.dawnsci.hdf.object/src/org/eclipse/dawnsci/hdf/object/HierarchicalInfo.java similarity index 98% rename from org.eclipse.dawnsci.hdf5/src/org/eclipse/dawnsci/hdf/object/HierarchicalInfo.java rename to org.eclipse.dawnsci.hdf.object/src/org/eclipse/dawnsci/hdf/object/HierarchicalInfo.java index ecd17aa4..96956953 100644 --- a/org.eclipse.dawnsci.hdf5/src/org/eclipse/dawnsci/hdf/object/HierarchicalInfo.java +++ b/org.eclipse.dawnsci.hdf.object/src/org/eclipse/dawnsci/hdf/object/HierarchicalInfo.java @@ -1,6 +1,6 @@ /*- ******************************************************************************* - * Copyright (c) 2011, 2014 Diamond Light Source Ltd. + * Copyright (c) 2011, 2017 Diamond Light Source Ltd. * All rights reserved. This program and the accompanying materials * are made available under the terms of the Eclipse Public License v1.0 * which accompanies this distribution, and is available at diff --git a/org.eclipse.dawnsci.hdf5/src/org/eclipse/dawnsci/hdf/object/IFileFormatDataFile.java b/org.eclipse.dawnsci.hdf.object/src/org/eclipse/dawnsci/hdf/object/IFileFormatDataFile.java similarity index 94% rename from org.eclipse.dawnsci.hdf5/src/org/eclipse/dawnsci/hdf/object/IFileFormatDataFile.java rename to org.eclipse.dawnsci.hdf.object/src/org/eclipse/dawnsci/hdf/object/IFileFormatDataFile.java index 337647d9..17df8c06 100644 --- a/org.eclipse.dawnsci.hdf5/src/org/eclipse/dawnsci/hdf/object/IFileFormatDataFile.java +++ b/org.eclipse.dawnsci.hdf.object/src/org/eclipse/dawnsci/hdf/object/IFileFormatDataFile.java @@ -1,6 +1,6 @@ /*- ******************************************************************************* - * Copyright (c) 2011, 2014 Diamond Light Source Ltd. + * Copyright (c) 2011, 2017 Diamond Light Source Ltd. * All rights reserved. This program and the accompanying materials * are made available under the terms of the Eclipse Public License v1.0 * which accompanies this distribution, and is available at diff --git a/org.eclipse.dawnsci.hdf5/src/org/eclipse/dawnsci/hdf/object/IHierarchicalDataFile.java b/org.eclipse.dawnsci.hdf.object/src/org/eclipse/dawnsci/hdf/object/IHierarchicalDataFile.java similarity index 99% rename from org.eclipse.dawnsci.hdf5/src/org/eclipse/dawnsci/hdf/object/IHierarchicalDataFile.java rename to org.eclipse.dawnsci.hdf.object/src/org/eclipse/dawnsci/hdf/object/IHierarchicalDataFile.java index 897f170a..58e5300f 100644 --- a/org.eclipse.dawnsci.hdf5/src/org/eclipse/dawnsci/hdf/object/IHierarchicalDataFile.java +++ b/org.eclipse.dawnsci.hdf.object/src/org/eclipse/dawnsci/hdf/object/IHierarchicalDataFile.java @@ -1,6 +1,6 @@ /*- ******************************************************************************* - * Copyright (c) 2011, 2014 Diamond Light Source Ltd. + * Copyright (c) 2011, 2017 Diamond Light Source Ltd. * All rights reserved. This program and the accompanying materials * are made available under the terms of the Eclipse Public License v1.0 * which accompanies this distribution, and is available at diff --git a/org.eclipse.dawnsci.hdf5/src/org/eclipse/dawnsci/hdf/object/Nexus.java b/org.eclipse.dawnsci.hdf.object/src/org/eclipse/dawnsci/hdf/object/Nexus.java similarity index 95% rename from org.eclipse.dawnsci.hdf5/src/org/eclipse/dawnsci/hdf/object/Nexus.java rename to org.eclipse.dawnsci.hdf.object/src/org/eclipse/dawnsci/hdf/object/Nexus.java index 287f4fe9..289552cf 100644 --- a/org.eclipse.dawnsci.hdf5/src/org/eclipse/dawnsci/hdf/object/Nexus.java +++ b/org.eclipse.dawnsci.hdf.object/src/org/eclipse/dawnsci/hdf/object/Nexus.java @@ -1,6 +1,6 @@ /*- ******************************************************************************* - * Copyright (c) 2011, 2014 Diamond Light Source Ltd. + * Copyright (c) 2011, 2017 Diamond Light Source Ltd. * All rights reserved. This program and the accompanying materials * are made available under the terms of the Eclipse Public License v1.0 * which accompanies this distribution, and is available at diff --git a/org.eclipse.dawnsci.hdf5/src/org/eclipse/dawnsci/hdf/object/nexus/IFindInNexus.java b/org.eclipse.dawnsci.hdf.object/src/org/eclipse/dawnsci/hdf/object/nexus/IFindInNexus.java similarity index 94% rename from org.eclipse.dawnsci.hdf5/src/org/eclipse/dawnsci/hdf/object/nexus/IFindInNexus.java rename to org.eclipse.dawnsci.hdf.object/src/org/eclipse/dawnsci/hdf/object/nexus/IFindInNexus.java index 8af8db33..09c1b37b 100644 --- a/org.eclipse.dawnsci.hdf5/src/org/eclipse/dawnsci/hdf/object/nexus/IFindInNexus.java +++ b/org.eclipse.dawnsci.hdf.object/src/org/eclipse/dawnsci/hdf/object/nexus/IFindInNexus.java @@ -1,6 +1,6 @@ /*- ******************************************************************************* - * Copyright (c) 2011, 2014 Diamond Light Source Ltd. + * Copyright (c) 2011, 2017 Diamond Light Source Ltd. * All rights reserved. This program and the accompanying materials * are made available under the terms of the Eclipse Public License v1.0 * which accompanies this distribution, and is available at diff --git a/org.eclipse.dawnsci.hdf5/src/org/eclipse/dawnsci/hdf/object/nexus/NexusFindDatasetByName.java b/org.eclipse.dawnsci.hdf.object/src/org/eclipse/dawnsci/hdf/object/nexus/NexusFindDatasetByName.java similarity index 95% rename from org.eclipse.dawnsci.hdf5/src/org/eclipse/dawnsci/hdf/object/nexus/NexusFindDatasetByName.java rename to org.eclipse.dawnsci.hdf.object/src/org/eclipse/dawnsci/hdf/object/nexus/NexusFindDatasetByName.java index d6533522..580a4802 100644 --- a/org.eclipse.dawnsci.hdf5/src/org/eclipse/dawnsci/hdf/object/nexus/NexusFindDatasetByName.java +++ b/org.eclipse.dawnsci.hdf.object/src/org/eclipse/dawnsci/hdf/object/nexus/NexusFindDatasetByName.java @@ -1,6 +1,6 @@ /*- ******************************************************************************* - * Copyright (c) 2011, 2014 Diamond Light Source Ltd. + * Copyright (c) 2011, 2017 Diamond Light Source Ltd. * All rights reserved. This program and the accompanying materials * are made available under the terms of the Eclipse Public License v1.0 * which accompanies this distribution, and is available at diff --git a/org.eclipse.dawnsci.hdf5/src/org/eclipse/dawnsci/hdf/object/nexus/NexusFindGroupByAttributeText.java b/org.eclipse.dawnsci.hdf.object/src/org/eclipse/dawnsci/hdf/object/nexus/NexusFindGroupByAttributeText.java similarity index 96% rename from org.eclipse.dawnsci.hdf5/src/org/eclipse/dawnsci/hdf/object/nexus/NexusFindGroupByAttributeText.java rename to org.eclipse.dawnsci.hdf.object/src/org/eclipse/dawnsci/hdf/object/nexus/NexusFindGroupByAttributeText.java index 7058a887..f4333820 100644 --- a/org.eclipse.dawnsci.hdf5/src/org/eclipse/dawnsci/hdf/object/nexus/NexusFindGroupByAttributeText.java +++ b/org.eclipse.dawnsci.hdf.object/src/org/eclipse/dawnsci/hdf/object/nexus/NexusFindGroupByAttributeText.java @@ -1,6 +1,6 @@ /*- ******************************************************************************* - * Copyright (c) 2011, 2014 Diamond Light Source Ltd. + * Copyright (c) 2011, 2017 Diamond Light Source Ltd. * All rights reserved. This program and the accompanying materials * are made available under the terms of the Eclipse Public License v1.0 * which accompanies this distribution, and is available at diff --git a/org.eclipse.dawnsci.hdf5/src/org/eclipse/dawnsci/hdf/object/nexus/NexusUtils.java b/org.eclipse.dawnsci.hdf.object/src/org/eclipse/dawnsci/hdf/object/nexus/NexusUtils.java similarity index 99% rename from org.eclipse.dawnsci.hdf5/src/org/eclipse/dawnsci/hdf/object/nexus/NexusUtils.java rename to org.eclipse.dawnsci.hdf.object/src/org/eclipse/dawnsci/hdf/object/nexus/NexusUtils.java index 09d67ebd..0abc50dd 100644 --- a/org.eclipse.dawnsci.hdf5/src/org/eclipse/dawnsci/hdf/object/nexus/NexusUtils.java +++ b/org.eclipse.dawnsci.hdf.object/src/org/eclipse/dawnsci/hdf/object/nexus/NexusUtils.java @@ -1,6 +1,6 @@ /*- ******************************************************************************* - * Copyright (c) 2011, 2014 Diamond Light Source Ltd. + * Copyright (c) 2011, 2017 Diamond Light Source Ltd. * All rights reserved. This program and the accompanying materials * are made available under the terms of the Eclipse Public License v1.0 * which accompanies this distribution, and is available at diff --git a/org.eclipse.dawnsci.hdf5/src/org/eclipse/dawnsci/hdf/object/operation/HierarchicalFileExecutionVisitor.java b/org.eclipse.dawnsci.hdf.object/src/org/eclipse/dawnsci/hdf/object/operation/HierarchicalFileExecutionVisitor.java similarity index 99% rename from org.eclipse.dawnsci.hdf5/src/org/eclipse/dawnsci/hdf/object/operation/HierarchicalFileExecutionVisitor.java rename to org.eclipse.dawnsci.hdf.object/src/org/eclipse/dawnsci/hdf/object/operation/HierarchicalFileExecutionVisitor.java index 2ff441f2..2dfd5837 100644 --- a/org.eclipse.dawnsci.hdf5/src/org/eclipse/dawnsci/hdf/object/operation/HierarchicalFileExecutionVisitor.java +++ b/org.eclipse.dawnsci.hdf.object/src/org/eclipse/dawnsci/hdf/object/operation/HierarchicalFileExecutionVisitor.java @@ -1,6 +1,6 @@ /*- ******************************************************************************* - * Copyright (c) 2011, 2014 Diamond Light Source Ltd. + * Copyright (c) 2011, 2017 Diamond Light Source Ltd. * All rights reserved. This program and the accompanying materials * are made available under the terms of the Eclipse Public License v1.0 * which accompanies this distribution, and is available at diff --git a/org.eclipse.dawnsci.hdf5.model/META-INF/MANIFEST.MF b/org.eclipse.dawnsci.hdf5.model/META-INF/MANIFEST.MF index 0eb16b1f..6d047750 100644 --- a/org.eclipse.dawnsci.hdf5.model/META-INF/MANIFEST.MF +++ b/org.eclipse.dawnsci.hdf5.model/META-INF/MANIFEST.MF @@ -10,4 +10,5 @@ Export-Package: org.eclipse.dawnsci.hdf5.model, Require-Bundle: hdf.object;bundle-version="2.9.0", org.eclipse.core.runtime;bundle-version="3.8.0", org.eclipse.core.resources;bundle-version="3.8.1", - org.eclipse.dawnsci.hdf5;bundle-version="1.3.0" + org.eclipse.dawnsci.hdf5;bundle-version="1.3.0", + org.eclipse.dawnsci.hdf.object diff --git a/org.eclipse.dawnsci.hdf5.test/src/org/eclipse/dawnsci/hdf5/AbstractThreadTestBase.java b/org.eclipse.dawnsci.hdf5.test/src/org/eclipse/dawnsci/hdf5/AbstractThreadTestBase.java index d7fe93c3..d1abd372 100644 --- a/org.eclipse.dawnsci.hdf5.test/src/org/eclipse/dawnsci/hdf5/AbstractThreadTestBase.java +++ b/org.eclipse.dawnsci.hdf5.test/src/org/eclipse/dawnsci/hdf5/AbstractThreadTestBase.java @@ -1,6 +1,6 @@ /*- ******************************************************************************* - * Copyright (c) 2011, 2014 Diamond Light Source Ltd. + * Copyright (c) 2011, 2017 Diamond Light Source Ltd. * All rights reserved. This program and the accompanying materials * are made available under the terms of the Eclipse Public License v1.0 * which accompanies this distribution, and is available at @@ -8,7 +8,7 @@ * * Contributors: * Matthew Gerring - initial API and implementation and/or initial documentation - *******************************************************************************/ + *******************************************************************************/ package org.eclipse.dawnsci.hdf5; @@ -16,76 +16,75 @@ * Class to extend, does not have any tests itself. */ public abstract class AbstractThreadTestBase { - - public void testInTestThread() throws Throwable{ + public void testInTestThread() throws Throwable { doTestOfDataSet(0); - + System.out.println("One thread passed."); } - + protected abstract void doTestOfDataSet(int index) throws Throwable; private Throwable exception; - + /** - * Test shows that nexus API cannot handle threads. + * Test shows that nexus API cannot handle threads. * * @throws Exception */ public void testWithTenThreads() throws Throwable { - + testWithNThreads(10); } /** * Start threads that each run {@link #doTestOfDataSet(int)} + * * @param threadNumber * @throws Throwable */ protected void testWithNThreads(int threadNumber) throws Throwable { - - exception = null; - - final boolean[] done = new boolean[threadNumber]; - final Thread[] threads = new Thread[threadNumber]; - for (int i = 0; i < threads.length; i++) { - final int index = i; - threads[i] = new Thread(new Runnable() { - @Override - public void run() { - done[index] = false; - try { - doTestOfDataSet(index); + + exception = null; + + final boolean[] done = new boolean[threadNumber]; + final Thread[] threads = new Thread[threadNumber]; + for (int i = 0; i < threads.length; i++) { + final int index = i; + threads[i] = new Thread(new Runnable() { + @Override + public void run() { + done[index] = false; + try { + doTestOfDataSet(index); } catch (Throwable e) { exception = e; } finally { - done[index] = true; + done[index] = true; } - } - }); + } + }); } - - for (int i = 0; i < threads.length; i++) { - threads[i].start(); - } - - // Wait for them to do their thing. - WHILE_LOOP: while(true) { - for (boolean d : done) { + + for (int i = 0; i < threads.length; i++) { + threads[i].start(); + } + + // Wait for them to do their thing. + WHILE_LOOP: while (true) { + for (boolean d : done) { if (!d) { Thread.sleep(1000); continue WHILE_LOOP; } - } - break; - } - - if (exception!=null) throw exception; - - - System.out.println(threadNumber+" threads passed."); - } + } + break; + } + + if (exception != null) + throw exception; + System.out.println(threadNumber + " threads passed."); + } } diff --git a/org.eclipse.dawnsci.hdf5.test/src/org/eclipse/dawnsci/hdf5/ReadThreadTest.java b/org.eclipse.dawnsci.hdf5.test/src/org/eclipse/dawnsci/hdf5/ReadThreadTest.java new file mode 100644 index 00000000..53b8ab62 --- /dev/null +++ b/org.eclipse.dawnsci.hdf5.test/src/org/eclipse/dawnsci/hdf5/ReadThreadTest.java @@ -0,0 +1,87 @@ +/*- + * Copyright 2015, 2017 Diamond Light Source Ltd. + * + * All rights reserved. This program and the accompanying materials + * are made available under the terms of the Eclipse Public License v1.0 + * which accompanies this distribution, and is available at + * http://www.eclipse.org/legal/epl-v10.html + */ + +package org.eclipse.dawnsci.hdf5; + +import java.util.Arrays; + +import org.eclipse.dawnsci.hdf5.HDF5File; +import org.eclipse.dawnsci.hdf5.HDF5FileFactory; +import org.eclipse.dawnsci.hdf5.HDF5Utils; +import org.eclipse.january.dataset.Dataset; +import org.eclipse.january.dataset.DatasetFactory; +import org.eclipse.january.dataset.PositionIterator; +import org.eclipse.january.dataset.ShapeUtils; +import org.junit.Test; + +public class ReadThreadTest extends AbstractThreadTestBase { + String file = "test-scratch/readthread.h5"; + String group = "/entry/group1/group2"; + int[] shape = new int[] {512, 128, 1024}; + int[] chunk = new int[] {1, 128, 1024}; + + @Test + public void testSingleThreadRead() throws Throwable { + prepareForTest(file, 1); + + doTestOfDataSet(0); + } + + @Test + public void testTwoThreadsRead() throws Throwable { + prepareForTest(file, 2); + + testWithNThreads(2); + } + + @Test + public void testEightThreadsRead() throws Throwable { + prepareForTest(file, 8); + + testWithNThreads(8); + } + + @Override + protected void doTestOfDataSet(int index) throws Throwable { + String dataName = "data" + index; + + PositionIterator iter = new PositionIterator(shape, 1, 2); + int[] start = iter.getPos(); + int[] stop = shape.clone(); + int[] step = new int[shape.length]; + Arrays.fill(step, 1); + int[] nshape = chunk.clone(); + long now; + + iter.reset(); + now = -System.nanoTime(); + while (iter.hasNext()) { + stop[0] = start[0] + 1; + HDF5Utils.loadDataset(file, dataName, start, nshape, step, Dataset.FLOAT64, 1, false); + } + HDF5FileFactory.releaseFile(file); + now += System.nanoTime(); + + System.err.println("Thd for " + dataName + " took " + now*1e-9 + "s"); + } + + private void prepareForTest(String file, int nthreads) throws Exception { + HDF5FileFactory.deleteFile(file); + + HDF5File f = HDF5FileFactory.acquireFileAsNew(file); + int size = ShapeUtils.calcSize(shape); + Dataset data = DatasetFactory.createRange(size, Dataset.FLOAT64); + data.setShape(shape); + + for (int i = 0; i < nthreads; i++) { + HDF5Utils.writeDataset(f, "data" + i, data); + } + HDF5FileFactory.releaseFile(file); + } +} diff --git a/org.eclipse.dawnsci.hdf5.test/src/org/eclipse/dawnsci/hdf5/WriteThreadTest.java b/org.eclipse.dawnsci.hdf5.test/src/org/eclipse/dawnsci/hdf5/WriteThreadTest.java index 238efb79..65fab170 100644 --- a/org.eclipse.dawnsci.hdf5.test/src/org/eclipse/dawnsci/hdf5/WriteThreadTest.java +++ b/org.eclipse.dawnsci.hdf5.test/src/org/eclipse/dawnsci/hdf5/WriteThreadTest.java @@ -1,5 +1,5 @@ /*- - * Copyright 2015 Diamond Light Source Ltd. + * Copyright 2015, 2017 Diamond Light Source Ltd. * * All rights reserved. This program and the accompanying materials * are made available under the terms of the Eclipse Public License v1.0 @@ -10,6 +10,8 @@ package org.eclipse.dawnsci.hdf5; import org.eclipse.dawnsci.analysis.api.io.ScanFileHolderException; +import org.eclipse.dawnsci.hdf5.HDF5FileFactory; +import org.eclipse.dawnsci.hdf5.HDF5Utils; import org.eclipse.january.dataset.Dataset; import org.eclipse.january.dataset.DatasetFactory; import org.eclipse.january.dataset.PositionIterator; diff --git a/org.eclipse.dawnsci.hdf5/META-INF/MANIFEST.MF b/org.eclipse.dawnsci.hdf5/META-INF/MANIFEST.MF index fd2f04ce..63da0125 100644 --- a/org.eclipse.dawnsci.hdf5/META-INF/MANIFEST.MF +++ b/org.eclipse.dawnsci.hdf5/META-INF/MANIFEST.MF @@ -16,10 +16,7 @@ Require-Bundle: hdf.hdf5lib;bundle-version="1.10.1", Bundle-RequiredExecutionEnvironment: JavaSE-1.7 Bundle-ActivationPolicy: lazy Bundle-ClassPath: . -Export-Package: org.eclipse.dawnsci.hdf.object, - org.eclipse.dawnsci.hdf.object.nexus, - org.eclipse.dawnsci.hdf.object.operation, - org.eclipse.dawnsci.hdf5, +Export-Package: org.eclipse.dawnsci.hdf5, org.eclipse.dawnsci.hdf5.nexus Import-Package: org.slf4j;version="[1.7.2,2.0.0)" Service-Component: OSGI-INF/*.xml diff --git a/org.eclipse.dawnsci.slicing.api/META-INF/MANIFEST.MF b/org.eclipse.dawnsci.slicing.api/META-INF/MANIFEST.MF index 60ed1ecc..719dbe77 100644 --- a/org.eclipse.dawnsci.slicing.api/META-INF/MANIFEST.MF +++ b/org.eclipse.dawnsci.slicing.api/META-INF/MANIFEST.MF @@ -13,7 +13,8 @@ Require-Bundle: org.eclipse.ui, org.eclipse.dawnsci.analysis.dataset;bundle-version="1.0.0", org.eclipse.dawnsci.hdf5;bundle-version="1.2.0", org.apache.commons.beanutils, - org.eclipse.richbeans.annot;bundle-version="1.0.0" + org.eclipse.richbeans.annot;bundle-version="1.0.0", + org.eclipse.dawnsci.hdf.object Bundle-RequiredExecutionEnvironment: JavaSE-1.7 Bundle-ActivationPolicy: lazy Export-Package: org.eclipse.dawnsci.slicing.api, diff --git a/pom.xml b/pom.xml index 90bfae37..5670bf46 100644 --- a/pom.xml +++ b/pom.xml @@ -32,6 +32,8 @@ org.eclipse.dawnsci.hdf5.model org.eclipse.dawnsci.hdf5.model.test org.eclipse.dawnsci.hdf5.test + org.eclipse.dawnsci.hdf.object + org.eclipse.dawnsci.hdf.object.test org.eclipse.dawnsci.json org.eclipse.dawnsci.json.test org.eclipse.dawnsci.macro.api