processTrajectories

[fengyun198503]

Hi, I met an error when I run processTrajectories.
The error is following:
Error in file(file, "rt") : cannot open the connection
In addition: Warning message:
In file(file, "rt") :
cannot open file 'C:/Users/Desktop/benthany/cellrouter-master/cellrouter-master/Myeloid_Progenitors/results/paths/6.1/Cells_FlowNetwork_all_paths.txt': No such file or directory
Called from: file(file, "rt")
Browse[1]>

Thank you~
Haichao

[edroaldo]

Hi, Can you please let me know which commands are you using? I need to know more details about how you are running the analysis. It seems that you are running the tutorial? Do yo have a file names "Cells_FlowNetwork_all_paths.txt" in your paths/6.1 folder? Thanks!

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On Tue, Oct 15, 2019 at 6:04 PM fengyun198503 ***@***.***> wrote: Hi, I met an error when I run processTrajectories. The error is following: Error in file(file, "rt") : cannot open the connection In addition: Warning message: In file(file, "rt") : cannot open file 'C:/Users/weihaichao/Desktop/benthany/cellrouter-master/cellrouter-master/Myeloid_Progenitors/results/paths/6.1/Cells_FlowNetwork_all_paths.txt': No such file or directory Called from: file(file, "rt") Browse[1]> Thank you~ Haichao — You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub <#27?email_source=notifications&email_token=ACNJIR6BNKP7SVCKMVVDNSLQOY45ZA5CNFSM4JBDTNGKYY3PNVWWK3TUL52HS4DFUVEXG43VMWVGG33NNVSW45C7NFSM4HR7536Q>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/ACNJIRYTDOSLS56FLCUH4E3QOY45ZANCNFSM4JBDTNGA> .

-- Edroaldo

[liangyuli12138]

Hi, I get the same problem when i use the processsTrajectories function. just like this :
Error in file(file, "rt") : cannot open the connection
In addition: Warning message:
In file(file, "rt") :
cannot open file '/public/workspace/lily/CellRouter/result/paths/1.8/Cells_FlowNetwork_all_paths.txt': No such file or directory

And i check the file ,there is no Cells_FlowNetwork_all_paths.txt in 1.8 folder .
1.8 only have three file : CellRouter.sh ; cell_sinks.txt ; cell_sources.txt.
and other file such as 1.0 have Cells_FlowNetwork_all_paths.txt, only 1.8 folder does not have.
Is the previous step wrong ?
Thanks !