ValueError: Bad Request

[Royaaghaeifar]

• stringdb version:
• Python version:
• Operating System:

Description

Hi,

Thanks for the package. I'm trying to use get_network() and get_interaction_partners() with and without other parameters such as species. I got Bad Request error for both. The codes work for get_functional_annotation() and get_enrichment(). I appreciate it if you can help me to fix the error.

What I Did

network = stringdb.get_network(string_ids.queryItem)
interaction = stringdb.get_interaction_partners(string_ids.queryItem)

output:

---

ValueError Traceback (most recent call last)
/var/folders/75/b15d_pjs1vsbflyppdmkh6s80000gn/T/ipykernel_68298/2207184296.py in
----> 1 interaction = stringdb.get_interaction_partners(string_ids.queryItem)
2 interaction

/opt/anaconda3/lib/python3.9/site-packages/stringdb/api.py in get_interaction_partners(identifiers, species, required_score, limit, caller_identity)
210 params['limit'] = limit
211 results = requests.post(request_url, data=params)
--> 212 df = handle_results(results)
213 return df
214

/opt/anaconda3/lib/python3.9/site-packages/stringdb/api.py in handle_results(results)
36 return df
37 else:
---> 38 raise ValueError(results.reason)
39
40

ValueError: Bad Request

[MorfeoRenai]

I run the commands and it doesn't raise any errors. What string_ids did you use? How many genes?