When performing quality control on dumpSTR for a T2T genome, what kind of file should be provided for the --filter-regions option? #255
Description
--gangstr-min-call-DP 20 --gangstr-max-call-DP 1000 --gangstr-min-call-Q 0.5 --min-locus-callrate 0.5 --min-locus-hwep 1e-6 --gangstr-filter-spanbound-only --gangstr-filter-badCI --filter-regions 220113.GRCh38GenomicSuperDup.bed.gz --filter-regions-names SEGDUP