HLA_parser.py related error

[CSree]

Hi
I am running the pipeline with the test data,
Iam getting the following error. The result files of HLA-HD and Optitype are present.
The file pVACseqAlleles.txt seems to be fine in the mentioned path.
Please help
Thanks in advance
Chai

---

Error executing process > 'get_vhla (new)'

Caused by:
Process get_vhla (new) terminated with an error exit status (127)

Command executed:

merging script

HLA_parser.py
--opti_out new_optitype_result.tsv
--hlahd_out new_tumor_DNA_final.result.txt
--opti_out_RNA new_optitype_RNA_result.tsv
--custom custom_hla.txt

--ref_hlas /gpfs/scratch/cs5359/Tools/neoAg_nextNeoPi/assets/pVACseqAlleles.txt
> ./new_hlas.txt

Command exit status:
127

Command output:
(empty)

Command error:
INFO: Converting SIF file to temporary sandbox...
.command.sh: line 4: HLA_parser.py: command not found
INFO: Cleaning up image...

[riederd]

Hi,
it seems you are missing HLA_parser.py which should be in your nextneopi bin directory.