Trying to calculate de gMCS of iJN1463 I get the following error, I think the issue starts when SD tries to trim some GPRs that exceeds the character limit.
WARNING:root: GPR rule integration automatically generates new reactions and metabolites.
One of the generated reaction names is beyond or close to the limit of 255 characters
permitted by GLPK and Gurobi. The name of the newly generated reaction or metabolite:
ERROR:root:Error code 10030: Overage for too long, 4 active sessions and over the baseline for 34 minutes