Read name format specification #24
Description
Good morning, I am encountering some errors while reprocessing single-cell level data downloaded from SRA. The issue is the way read names are split in the part devoted to contact creation. In particular, SRA read names create problems with the step _parse_bam() for the snm3C pipeline.
Could you perhaps share the expected read name formatting that is meant to be used for the pipeline? I am sure I can convert SRA read names, but I need to know how they should be formed to do so. If you could also share one of the original non-demultiplexed files it would be great, so I can verify that I've setup the full pipeline correctly.
Thank you