From 3ea80e0cf7c8cfadf29c6f0cea0c5cad59a803f6 Mon Sep 17 00:00:00 2001 From: jksr Date: Mon, 25 Sep 2023 13:59:53 -0700 Subject: [PATCH] Update fastq_dataframe.py nova x has 8 lanes --- cemba_data/demultiplex/fastq_dataframe.py | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/cemba_data/demultiplex/fastq_dataframe.py b/cemba_data/demultiplex/fastq_dataframe.py index 31b52c0..1e36cb5 100644 --- a/cemba_data/demultiplex/fastq_dataframe.py +++ b/cemba_data/demultiplex/fastq_dataframe.py @@ -26,7 +26,7 @@ def _parse_v1_fastq_path(path): try: assert plate_pos[0] in 'ABCDEFGH' assert int(plate_pos[1:]) in list(range(1, 13)) - assert lane in {'L001', 'L002', 'L003', 'L004'} + assert lane in {'L001', 'L002', 'L003', 'L004', 'L005', 'L006', 'L007', 'L008'} # nova x has 8 lanes assert read_type in {'R1', 'R2'} assert plate1 != plate2 except AssertionError: @@ -58,7 +58,7 @@ def _parse_v2_fastq_path(path): assert primer_name[0] in 'ABCDEFGHIJKLMNOP' assert int(primer_name[1:]) in list(range(1, 25)) assert int(multiplex_group) in list(range(1, 7)) - assert lane in {'L001', 'L002', 'L003', 'L004'} + assert lane in {'L001', 'L002', 'L003', 'L004', 'L005', 'L006', 'L007', 'L008'} # nova x has 8 lanes assert read_type in {'R1', 'R2'} except AssertionError: raise ValueError