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Description
installation instructions are clunky - use this instead
# 1. Create & activate a fresh env (if you haven’t already):
mamba create -n bactqc-env python=3.8 -y
mamba activate bactqc-env
# 2. Install the Python deps listed in your README:
pip install pandas requests click rich emoji
# (Or, if you have a requirements.txt in the repo:
# pip install -r requirements.txt
# )
# 3. From the repo root, install bactQC itself:
cd /path/to/bactQC
pip install .
# 4. Verify that the CLI is available:
which bactQC
bactQC --help
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