From the tests:
tests/test_reconstruction.py::test_graph_size
tests/test_reconstruction.py::test_partial_correlation
/home/main/.pyenv/versions/miniconda3-latest/lib/python3.6/site-packages/scipy/stats/stats.py:3399: PearsonRConstantInputWarning: An input array is constant; the correlation coefficent is not defined.
warnings.warn(PearsonRConstantInputWarning())
Don't recall seeing this before, maybe a new warning in scipy? Plausible that the warning is nothing, but should explore further.