From 10223221ad637451c7e22312d84cf988c386b626 Mon Sep 17 00:00:00 2001 From: Thomas Danhorn Date: Wed, 22 Jan 2025 00:53:29 -0700 Subject: [PATCH 1/3] Fix samplesheet validation Remove requirement for "fastq_2" (credit to @nvnieuwk) --- CHANGELOG.md | 1 + assets/schema_input.json | 2 +- 2 files changed, 2 insertions(+), 1 deletion(-) diff --git a/CHANGELOG.md b/CHANGELOG.md index 010d16194..cd0dc16c5 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -55,6 +55,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0 - Fixed bug in `GFFREAD` that caused output `gffread_fasta` not being produced [#565](https://github.com/nf-core/rnafusion/issues/565) - Fixed bug in `FUSIONCATCHER_DOWNLOAD` that caused an error when running with singularity profile [#573](https://github.com/nf-core/rnafusion/issues/573) - Fixed missing script `gtf2bed` which caused local module `GET_RRNA_TRANSCRIPTS` to fail [#602](https://github.com/nf-core/rnafusion/issues/602) +- Fixed samplesheet validation which caused errors on single-end reads [#612](https://github.com/nf-core/rnafusion/issues/612) ### Removed diff --git a/assets/schema_input.json b/assets/schema_input.json index a55008106..15ec66a85 100644 --- a/assets/schema_input.json +++ b/assets/schema_input.json @@ -33,6 +33,6 @@ "errorMessage": "Strandedness has to be forward, reverse, unstranded or unknown" } }, - "required": ["sample", "fastq_1", "fastq_2", "strandedness"] + "required": ["sample", "fastq_1", "strandedness"] } } From 11e0b18f17e34d76f4ae5da4aa738600979a153e Mon Sep 17 00:00:00 2001 From: tdanhorn Date: Sun, 9 Feb 2025 00:01:01 -0700 Subject: [PATCH 2/3] Fix CHANGELOG.md Co-authored-by: Nicolas Vannieuwkerke <101190534+nvnieuwk@users.noreply.github.com> --- CHANGELOG.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/CHANGELOG.md b/CHANGELOG.md index 45432e96c..3ace1619f 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -56,7 +56,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0 - Fixed bug in `GFFREAD` that caused output `gffread_fasta` not being produced [#565](https://github.com/nf-core/rnafusion/issues/565) - Fixed bug in `FUSIONCATCHER_DOWNLOAD` that caused an error when running with singularity profile [#573](https://github.com/nf-core/rnafusion/issues/573) - Fixed missing script `gtf2bed` which caused local module `GET_RRNA_TRANSCRIPTS` to fail [#602](https://github.com/nf-core/rnafusion/issues/602) -- Fixed samplesheet validation which caused errors on single-end reads [#612](https://github.com/nf-core/rnafusion/issues/612) +- Fixed samplesheet validation which caused errors on single-end reads [#613](https://github.com/nf-core/rnafusion/issues/613) ### Removed From 35ac788e50467c94f6e959071a789f06cc5c74ee Mon Sep 17 00:00:00 2001 From: Thomas Danhorn Date: Sun, 9 Feb 2025 00:41:03 -0700 Subject: [PATCH 3/3] Revert "Fix CHANGELOG.md" This reverts commit 11e0b18f17e34d76f4ae5da4aa738600979a153e. --- CHANGELOG.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/CHANGELOG.md b/CHANGELOG.md index 3ace1619f..45432e96c 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -56,7 +56,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0 - Fixed bug in `GFFREAD` that caused output `gffread_fasta` not being produced [#565](https://github.com/nf-core/rnafusion/issues/565) - Fixed bug in `FUSIONCATCHER_DOWNLOAD` that caused an error when running with singularity profile [#573](https://github.com/nf-core/rnafusion/issues/573) - Fixed missing script `gtf2bed` which caused local module `GET_RRNA_TRANSCRIPTS` to fail [#602](https://github.com/nf-core/rnafusion/issues/602) -- Fixed samplesheet validation which caused errors on single-end reads [#613](https://github.com/nf-core/rnafusion/issues/613) +- Fixed samplesheet validation which caused errors on single-end reads [#612](https://github.com/nf-core/rnafusion/issues/612) ### Removed