Error in xy.coords(x, y, xlabel, ylabel, log) :

[mcpitman2]

Hi, I'm completely new to R. I have installed and run Citrus 0.8 on R 4.0.0 using the shiny GUI. However, every time I try to run an analysis I get an error message within R saying "Error in xy.coords(x, y, xlabel, ylabel, log) :
'x' and 'y' lengths differ
In addition: Warning message:
In if (class(x) == "dist") { :
the condition has length > 1 and only the first element will be used"

Any suggestion as to what I could be doing wrong? It happens even when I follow all of the instructions at https://github.com/nolanlab/citrus/wiki/Synthetic-Example-1

Thanks, Matthew

[nvall]

Hi Matthew, I encountered the same issue this week. You may try to use an older version of R, it works with 3.6.3. Hope it will help.

[mcpitman2]

Thanks very much nvall. Yes, it works with version 3.6.3 for me too.

Kind regards

Matthew

[chsher]

Hi, how did you install Rclusterpp? I am using version 3.6.3 and receive the following error message when I try to install Rclusterpp:

Warning message:
package ‘Rclusterpp’ is not available (for R version 3.6.3)

[mcpitman2]

I just followed the instructions at https://github.com/nolanlab/citrus/wiki/Installing-Citrus

Specifically:
install_github("nolanlab/Rclusterpp")

I don't recall having any issues.

[JC19C]

Hi,
Do you have an insight about the cause of the issue here (FCS file format?), or an alternative solution?

As I have the same error on R 4.1.3, and a RStudio fatal error with crash on R 3.6.3

Thanks for your help!
J

[rbruggner]

I am working on some package maintenance now - seems like a good time to update for compatibility with R 4.0 since it's been out for about 2 years at this point :)

[JC19C]

Ok, great, thank you, let me know how it goes, and if I can help by providing error messages don't hesitate! Thanks, Jonathan <https://www.avast.com/sig-email?utm_medium=email&utm_source=link&utm_campaign=sig-email&utm_content=webmail> Garanti sans virus. www.avast.com <https://www.avast.com/sig-email?utm_medium=email&utm_source=link&utm_campaign=sig-email&utm_content=webmail> <#DAB4FAD8-2DD7-40BB-A1B8-4E2AA1F9FDF2> Le mar. 26 avr. 2022 à 17:38, Robert Bruggner ***@***.***> a écrit :

…

I am working on some package maintenance now - seems like a good time to update for compatibility with R 4.0 since it's been out for about 2 years at this point :) — Reply to this email directly, view it on GitHub <#130 (comment)>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/AXFLMCWBJOHYVY72UNOGCYDVHAEWHANCNFSM4NKIARNA> . You are receiving this because you commented.Message ID: ***@***.***>

[nvall]

Hi, Do you have an insight about the cause of the issue here (FCS file format?), or an alternative solution? As I have the same error on R 4.1.3, and a RStudio fatal error with crash on R 3.6.3

@JC19C to avoid RStudio crashes, you should consider run R directly from a terminal and go back to your v4 when you're done with Citrus. Try RSwitch software to change you current default R version.

I am working on some package maintenance now - seems like a good time to update for compatibility with R 4.0 since it's been out for about 2 years at this point :)

@rbruggner send me a message if you need help.

Best,
Nicolas

[rbruggner]

@JC19C Give the latest master branch a pull and lmk if it fixes the issue?

[JC19C]

It's working perfectly thanks! <https://www.avast.com/sig-email?utm_medium=email&utm_source=link&utm_campaign=sig-email&utm_content=webmail> Garanti sans virus. www.avast.com <https://www.avast.com/sig-email?utm_medium=email&utm_source=link&utm_campaign=sig-email&utm_content=webmail> <#DAB4FAD8-2DD7-40BB-A1B8-4E2AA1F9FDF2> Le ven. 29 avr. 2022 à 00:38, Robert Bruggner ***@***.***> a écrit :

…

@JC19C <https://github.com/JC19C> Give the latest master branch a pull and lmk if it fixes the issue? — Reply to this email directly, view it on GitHub <#130 (comment)>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/AXFLMCRIRZCYBVRKT54JLDLVHMHM7ANCNFSM4NKIARNA> . You are receiving this because you were mentioned.Message ID: ***@***.***>