Extending phys2bids data support and improving its documentation

[smoia]

Title

Extending phys2bids data support and improving its documentation

Short description and the goals for this BrainHack project

Phys2bids is Physiopy's BIDSificator, covering a good span of physiological vendors data formats already. One major missing feature, however, is the lack of support for some MRI vendors physiological data format.
On top of that, the tutorial section of the documentation could be improved to simplify usability, and user testing could help us detect new features.
Within this project, we propose different aims for all types of skills, learning goals, and collaborations:

1. Implement data support for SIEMENS [coding skills required: python]
2. Implement data support for hd5f data [coding skills required: python]
3. Implement a feature to automatically find groups of TRs in physiological files [coding skills required: python]
4. Update the documentation to help better usage of phys2bids [no coding skills required]
5. Update the "tutorial" section of phys2bids with more practical examples and videos [no coding skills required, a light knowledge of restructured text is welcome]
6. User test phys2bids to find feature that could be added [requires running phys2bids on data and opening issues on phys2bids' github pages]

Link to the Project

https://github.com/physiopy/phys2bids

Image/Logo for the Workshop website

No response

Project lead

Stefano Moia @smoia

Skills

Depending on the subtrack of interest:
1-3. Python coding required
4-5. No particular skills required, although familiarity with restructured text is helpful
6. No skill required, besides being ready to run phys2bids on some data.

Recommended tutorials for new contributors

No response

Good first issues

No response

Please read and follow the OHBM Code of Conduct

• I agree to follow the OHBM Code of Conduct during the hackathon

[juchiyu]

Discussion #3 created