Dependabot not able to create PRs for security updates

[madwort]

The job-runner repo currently has one open dependabot PR for pip, but there are currently multiple queued python package updates with security issues including certifi, urllib3, .... Looking at certifi as an example, dependabot is apparently unable to create a PR (see below).

Maybe we should

• monitor open dependabot security issues on the dashboard, as well as open dependabot PRs
• do a survey of repositories with blocked security issues like this
• fix all affected repositories

  proxy | 2023/12/06 11:02:27 proxy starting, commit: 6cffd6fae1b2f713f2d837bc45fe916f855c821d
  proxy | 2023/12/06 11:02:27 Listening (:1080)
updater | 2023-12-06T11:02:27.776132078 [759114296:main:WARN:src/devices/src/legacy/serial.rs:222] Detached the serial input due to peer close/error.
updater | time="2023-12-06T11:02:29Z" level=info msg="guest starting" commit=17df297b9449ef5936111b658329653bcfc0c9bc
updater | time="2023-12-06T11:02:29Z" level=info msg="starting job..." fetcher_timeout=10m0s job_id=759114296 updater_timeout=45m0s updater_version=500188dd3d1d145626d55c8281aef7d7dae974c1-pip
updater | 2023/12/06 11:02:31 INFO Raven 3.1.2 ready to catch errors
updater | 2023/12/06 11:02:32 INFO <job_759114296> Starting job processing
  proxy | 2023/12/06 11:02:33 [002] GET https://github.com:443/opensafely-core/job-runner/info/refs?service=git-upload-pack
  proxy | 2023/12/06 11:02:33 [002] * authenticating git server request (host: github.com)
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updater | 2023/12/06 11:02:33 INFO <job_759114296> Finished job processing
updater | time="2023-12-06T11:02:33Z" level=info msg="task complete" container_id=job-759114296-file-fetcher exit_code=0 job_id=759114296 step=fetcher
updater | 2023/12/06 11:02:34 INFO Raven 3.1.2 ready to catch errors
updater | 2023/12/06 11:02:36 INFO <job_759114296> Starting job processing
updater | 2023/12/06 11:02:42 INFO <job_759114296> Starting security update job for opensafely-core/job-runner
updater | 2023/12/06 11:02:42 INFO <job_759114296> Checking if certifi 2020.11.8 needs updating
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updater | 2023/12/06 11:02:42 INFO <job_759114296> Latest version is 2023.11.17
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  proxy | 2023/12/06 11:02:55 [137] GET https://files.pythonhosted.org:443/packages/80/c1/23fd82ad3121656b585351aba6c19761926bb0db2ebed9e4ff09a43a3fcc/pyparsing-3.0.7-py3-none-any.whl
  proxy | 2023/12/06 11:02:55 [137] 200 https://files.pythonhosted.org:443/packages/80/c1/23fd82ad3121656b585351aba6c19761926bb0db2ebed9e4ff09a43a3fcc/pyparsing-3.0.7-py3-none-any.whl
  proxy | 2023/12/06 11:02:55 [138] GET https://files.pythonhosted.org:443/packages/ec/6b/63cc3df74987c36fe26157ee12e09e8f9db4de771e0f3404263117e75b95/typing_extensions-4.7.1-py3-none-any.whl
  proxy | 2023/12/06 11:02:55 [138] 200 https://files.pythonhosted.org:443/packages/ec/6b/63cc3df74987c36fe26157ee12e09e8f9db4de771e0f3404263117e75b95/typing_extensions-4.7.1-py3-none-any.whl
updater | 2023/12/06 11:02:55 INFO <job_759114296> Requirements to unlock update_not_possible
updater | 2023/12/06 11:02:55 INFO <job_759114296> Requirements update strategy bump_versions
updater | 2023/12/06 11:02:55 INFO <job_759114296> The latest possible version of certifi that can be installed is 2020.11.8
updater | 2023/12/06 11:02:55 INFO <job_759114296> The earliest fixed version is 2023.7.22.
updater | 2023/12/06 11:02:56 INFO <job_759114296> Finished job processing
updater | 2023/12/06 11:02:56 INFO Results:
updater | Dependabot encountered '1' error(s) during execution, please check the logs for more details.
updater | +------------------------------+
updater | |            Errors            |
updater | +------------------------------+
updater | | security_update_not_possible |
updater | +------------------------------+
updater | time="2023-12-06T11:02:56Z" level=info msg="task complete" container_id=job-759114296-updater exit_code=0 job_id=759114296 step=updater

[madwort]

dashboard monitoring of this is already being looked at!

[StevenMaude]

For what it's worth, I think the specific issue in the logs is possibly to the use of a constraint in the requirements file.

It's a pattern we use in lots of our projects.

Issues:

• Including constraints refs in requirements.in makes dependabot skip updates dependabot/dependabot-core#2272
• Dependabot can't upgrade certifi dependabot/dependabot-core#6959