Conda Docker build fails #50
Description
Hi,
If I checkout and either use master or develop, the Docker build ("docker build .") breaks (Docker runs on Fedora):
[...]
[100%] Built target rdMolDescriptors
[100%] Linking CXX shared module ../../../../rdkit/Chem/rdChemReactions.so
[100%] Built target rdChemReactions
[100%] Linking CXX executable testReaction
[100%] Built target testReaction
++ uname
- [[ Linux == \L\i\n\u\x ]]
- RDBASE=/home/rdkit/bld/rdkit_1494777495800/work
- LD_LIBRARY_PATH=/home/rdkit/bld/rdkit_1494777495800/_b_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pl/lib:/home/rdkit/bld/rdkit_1494777495800/work/lib
- PYTHONPATH=/home/rdkit/bld/rdkit_1494777495800/work
- ctest -j4 --output-on-failure
Test project /home/rdkit/bld/rdkit_1494777495800/work
Start 1: testInchi
Start 2: testAvalonLib1
Start 3: pyAvalonTools
Start 4: testDict
1/118 Test conda and $RDBASE #3: pyAvalonTools ...................... Passed 0.19 sec
Start 5: testRDValue
2/118 Test Multithread support #5: testRDValue ........................ Passed 0.30 sec
Start 6: testDataStructs
3/118 Test Boost in conda anaconda channel not compatible with rdkit. #6: testDataStructs .................... Passed 0.20 sec
Start 7: testFPB
4/118 Test switch to using pillow instead of pil for all python versions #7: testFPB ............................ Passed 0.30 sec
Start 8: testMultiFPB
5/118 Test comment out empty build block #8: testMultiFPB ....................... Passed 0.01 sec
Start 9: pyBV
6/118 Test Get the boost build working with py35 #9: pyBV ............................... Passed 0.42 sec
Start 10: pyDiscreteValueVect
7/118 Test conda build support on the mac #4: testDict ........................... Passed 2.53 sec
8/118 Test move the inchi library into a separate conda package #10: pyDiscreteValueVect ................ Passed 0.30 sec
Start 11: pySparseIntVect
Start 12: pyFPB
9/118 Test updated Makefile patch for building the postgres cartridge #11: pySparseIntVect .................... Passed 0.20 sec
Start 13: testTransforms
10/118 Test Add a headless cairo build #12: pyFPB .............................. Passed 0.30 sec
11/118 Test Moving builds over to bioconda #13: testTransforms ..................... Passed 0.20 sec
Start 14: testGrid
Start 15: testPyGeometry
12/118 Test switch to ctest instead of 'make test' #14: testGrid ........................... Passed 0.11 sec
13/118 Test Enable parallel builds #15: testPyGeometry ..................... Passed 0.12 sec
Start 16: testMatrices
Start 17: testAlignment
14/118 Test update development branch to current rdkit release #17: testAlignment ...................... Passed 0.10 sec
15/118 Test explicit avalon and inchi pulls no longer required; bump version #16: testMatrices ....................... Passed 0.20 sec
Start 18: pyAlignment
Start 19: testOptimizer
16/118 Test update of the master branch for rel 2016.03.1 #19: testOptimizer ...................... Passed 0.10 sec
17/118 Test remove the rdkit depictor patch #18: pyAlignment ........................ Passed 0.20 sec
Start 20: testUFFForceField
Start 21: testMMFFForceField
18/118 Test chain commands to reduce the image layering #20: testUFFForceField .................. Passed 0.11 sec
Start 22: pyForceFieldConstraints
19/118 Test build fails on CentOS 6.4 #22: pyForceFieldConstraints ............ Passed 0.91 sec
20/118 Test Patches for boost required to build on OS X #1: testInchi .......................... Passed 4.99 sec
Start 23: testDistGeom
Start 24: pyDistGeom
21/118 Test update the rdkit-postgresql* patch files #24: pyDistGeom ......................... Passed 0.10 sec
22/118 Test update to 2016.03.3 #23: testDistGeom ....................... Passed 0.10 sec
Start 25: graphmolTest1
Start 26: graphmolcpTest
23/118 Test switch to using conda postgresql #26: graphmolcpTest ..................... Passed 0.10 sec
24/118 Test update to Release_2016_03_4 #25: graphmolTest1 ...................... Passed 0.10 sec
Start 27: graphmolqueryTest
Start 28: graphmolMolOpsTest
25/118 Test postgressql95 #27: graphmolqueryTest .................. Passed 0.20 sec
Start 29: graphmoltestCanon
26/118 Test fix issue #27 (reprise) #29: graphmoltestCanon .................. Passed 0.20 sec
Start 30: graphmoltestChirality
27/118 Test update to new release #30: graphmoltestChirality .............. Passed 0.20 sec
Start 31: graphmoltestPickler
28/118 Test Fix issue 27 #28: graphmolMolOpsTest ................. Passed 1.05 sec
29/118 Test Fix postgres patch for 2016.09.1 #31: graphmoltestPickler ................ Passed 0.22 sec
Start 32: graphmoltestPicklerGlobalSetting
Start 33: graphmolIterTest
30/118 Test fix the RDConfig patch in the rdkit recipe [win] #32: graphmoltestPicklerGlobalSetting ... Passed 0.10 sec
31/118 Test Update to 2016 09 2 #33: graphmolIterTest ................... Passed 0.20 sec
Start 34: hanoiTest
Start 35: graphmolMemTest1
32/118 Test Add own cairo #35: graphmolMemTest1 ................... Passed 0.20 sec
Start 36: resMolSupplierTest
33/118 Test relocate the conda build directory to fix the postgresql build. #36: resMolSupplierTest ................. Passed 1.11 sec
Start 37: testDepictor
34/118 Test 2016.09.2 rdkit build error on fedora 25 #37: testDepictor ....................... Passed 0.30 sec
Start 38: pyDepictor
35/118 Test use cmake to build the postgresql cartridge #38: pyDepictor ......................... Passed 0.60 sec
Start 39: smiTest1
36/118 Test conda build of Release_2016_09_2 on Kubuntu 16.10 64bit fails #39: smiTest1 ........................... Passed 0.30 sec
Start 40: cxsmilesTest
37/118 Test Lots of test failed on CentOS7 #40: cxsmilesTest ....................... Passed 0.20 sec
Start 41: smaTest1
38/118 Test Conda build fails on MacOS #41: smaTest1 ........................... Passed 1.11 sec
Start 42: fileParsersTest1
39/118 Test fix the rdkit-postgresql* recipes for Release_2016_03_2 #21: testMMFFForceField ................. Passed 8.44 sec
Start 43: testMolSupplier
40/118 Test sync 'development' branch with 'master' and update for 2016.09.3 #43: testMolSupplier .................... Passed 0.40 sec
Start 44: testMolWriter
41/118 Test consider porting to conda-forge? #44: testMolWriter ...................... Passed 0.40 sec
Start 45: testTplParser
42/118 Test update boost build to symlink python lib for all 3.x #45: testTplParser ...................... Passed 0.02 sec
Start 46: testMol2ToMol
43/118 Test Test inconda build rdkitfails in Ubuntu 14.04 #46: testMol2ToMol ...................... Passed 0.04 sec
Start 47: testSequence
44/118 Test RDKit for python 3.6 #47: testSequence ....................... Passed 0.05 sec
Start 48: testSubstructMatch
45/118 Test Correct link to miniconda website #2: testAvalonLib1 ..................... Passed 14.73 sec
Start 49: testReaction
46/118 Test Package not found on macOS: rdkit-postgresql #48: testSubstructMatch ................. Passed 0.71 sec
47/118 Test conda build fails with latest anaconda on Windows 10 #49: testReaction ....................... Passed 0.41 sec
Start 50: testReactionFingerprints
Start 51: testEnumeration
48/118 Test Conda Docker build fails #50: testReactionFingerprints ........... Passed 0.03 sec
49/118 Test - enable conda-rdkit builds on all platforms #51: testEnumeration .................... Passed 0.23 sec
Start 52: pyChemReactions
Start 53: pyChemReactionEnumerations
50/118 Test - added recipes for Windows PostgreSQL dependencies #52: pyChemReactions .................... Passed 0.30 sec
Start 54: pyChemReactionSanitize
51/118 Test merge development branch back over to master #54: pyChemReactionSanitize ............. Passed 0.16 sec
Start 55: testChemTransforms
52/118 Test review the dependency from ICU #55: testChemTransforms ................. Passed 0.31 sec
Start 56: testSubgraphs1
53/118 Test conda-build v3.0 breaks the rdkit recipes #53: pyChemReactionEnumerations ......... Passed 1.05 sec
Start 57: testSubgraphs2
54/118 Test RuntimeError when using numpy <1.13 #57: testSubgraphs2 ..................... Passed 0.01 sec
55/118 Test Numerous updates #56: testSubgraphs1 ..................... Passed 0.39 sec
Start 58: filterCatalogTest
Start 59: pyFilterCatalog
56/118 Test implemented alternative versioning mechanism to __conda_version__ (issue #53) #58: filterCatalogTest .................. Passed 0.40 sec
Start 60: testFragCatalog
57/118 Test Updates conda version to conda 3.0 compatible version #59: pyFilterCatalog .................... Passed 1.01 sec
Start 61: pyFragCatalog
58/118 Test Import error in jupyter and pycharm (Windows10) #60: testFragCatalog .................... Passed 0.50 sec
59/118 Test rdkit build fail #61: pyFragCatalog ...................... Passed 0.20 sec
Start 62: testDescriptors
Start 63: testPBF
60/118 Test Failure with conda build rdkit in Linux #63: testPBF ............................ Passed 0.30 sec
Start 64: test3D
61/118 Test Updates for the new conda #64: test3D ............................. Passed 0.92 sec
Start 65: pyMolDescriptors
62/118 Test update the rdkit-postgresql recipe for release 2018.03 #65: pyMolDescriptors ................... Passed 0.52 sec
Start 66: testFingerprints
63/118 Test rdkit builds fail because of sourceforge.net downloads? #62: testDescriptors .................... Passed 3.66 sec
Start 67: testPartialCharges
64/118 Test speed up postgresql builds #67: testPartialCharges ................. Passed 0.04 sec
Start 68: pyPartialCharges
65/118 Test remove the now obsolete rdkit-postgresql95 recipe #68: pyPartialCharges ................... Passed 0.32 sec
Start 69: testMolTransforms
66/118 Test Merge development branch onto master #69: testMolTransforms .................. Passed 0.04 sec
Start 70: pyMolTransforms
67/118 Test Update the boost version to 1.62 #42: fileParsersTest1 ................... Passed 12.46 sec
Start 71: testMMFFForceFieldHelpers
68/118 Test Adds travis-ci builds to conda-rdkit #70: pyMolTransforms .................... Passed 0.32 sec
Start 72: testUFFForceFieldHelpers
69/118 Test fix unix boost version to 1.65.1 #66: testFingerprints ................... Passed 8.58 sec
Start 73: testCrystalForceField
70/118 Test be less specific about the boost version #73: testCrystalForceField .............. Passed 0.05 sec
Start 74: pyForceFieldHelpers
71/118 Test is it expected that boost is pulled from conda3 main channel and not rdkit? #74: pyForceFieldHelpers ................ Passed 0.42 sec
72/118 Test add --output-on-failure to ctest flags #34: hanoiTest .......................... Passed 23.39 sec
Start 75: testDistGeomHelpers
Start 76: pyDistGeom
73/118 Test Fix runtime specification for boost #76: pyDistGeom ......................... Passed 5.56 sec
Start 77: testMolAlign
74/118 Test Need some way to lock the version of boost to what we build against #71: testMMFFForceFieldHelpers .......... Passed 17.79 sec
Start 78: pyMolAlign
75/118 Test pin the runtime dependency from the boost libraries #72: testUFFForceFieldHelpers ........... Passed 20.72 sec
Start 79: testFeatures
76/118 Test clean install of conda python 3.7 rdkit rdkit for postgres on ubuntu 18.04 has boost version issues #79: testFeatures ....................... Passed 0.20 sec
Start 80: pyChemicalFeatures
77/118 Test psql error #80: pyChemicalFeatures ................. Passed 0.25 sec
Start 81: testShapeHelpers
78/118 Test Error building conda-rdkit behind a firewall #81: testShapeHelpers ................... Passed 0.22 sec
Start 82: pyShapeHelpers
79/118 Test Cannot import rdEHTTools #82: pyShapeHelpers ..................... Passed 0.29 sec
Start 83: testMolCatalog
80/118 Test mirror development over to master #83: testMolCatalog ..................... Passed 0.21 sec
Start 84: pyMolCatalog
81/118 Test Default rdkit from conda uses outdated version #84: pyMolCatalog ....................... Passed 0.29 sec
Start 85: moldraw2DTest1
82/118 Test Fixes broken PostgreSQL cartridge build on Windows #85: moldraw2DTest1 ..................... Passed 2.62 sec
Start 86: pyMolDraw2D
83/118 Test Fixes broken PostgreSQL cartridge build on Windows #86: pyMolDraw2D ........................ Passed 0.26 sec
Start 87: testFMCS
84/118 Test ArgumentError: Python argument types in rdkit.Chem.rdMolDescriptors.CalcCrippenDescriptors(NoneType) did not match C++ signature: #87: testFMCS ........................... Passed 1.42 sec
Start 88: pyFMCS
85/118 Test remove things we never build #88: pyFMCS ............................. Passed 1.42 sec
Start 89: FMCStest
86/118 Test Changed CMake parameter to RDK_OPTIMIZE_POPCNT (see rdkit PR #2865) #89: FMCStest ........................... Passed 0.21 sec
Start 90: testMolHash
87/118 Test Issues with pandas on Ubuntu. #90: testMolHash ........................ Passed 0.21 sec
Start 91: pyMolHash
88/118 Test [WIP] Build RDKIT with python 3.8 #91: pyMolHash .......................... Passed 0.23 sec
Start 92: testMMPA
89/118 Test RDkit 2020.09.4 release issues with Conda-forge build and other modules (Python3-saml) #92: testMMPA ........................... Passed 0.21 sec
Start 93: pyMMPA
90/118 Test rdkit installs libboost 1.67.0 rdkit-postgresql wants 1.65.1 #78: pyMolAlign ......................... Passed 14.35 sec
91/118 Test Explicit valence for atom # 1 O, 3, is greater than permitted #93: pyMMPA ............................. Passed 1.74 sec
Start 94: testStructChecker
Start 95: pyStructChecker
92/118 Test #94: testStructChecker .................. Passed 0.10 sec
93/118 Test #95: pyStructChecker .................... Passed 0.15 sec
Start 96: testReducedGraphs
Start 97: pyReducedGraphs
94/118 Test #97: pyReducedGraphs .................... Passed 0.12 sec
95/118 Test #96: testReducedGraphs .................. Passed 0.12 sec
Start 98: trajectoryTest
Start 99: testSLNParse
96/118 Test #98: trajectoryTest ..................... Passed 0.16 sec
97/118 Test #99: testSLNParse ....................... Passed 0.16 sec
Start 100: pySLNParse
Start 101: pyGraphMolWrap
98/118 Test #100: pySLNParse ......................... Passed 0.20 sec
Start 102: pyTestConformerWrap
99/118 Test #102: pyTestConformerWrap ................ Passed 0.20 sec
Start 103: pyTestTrajectory
100/118 Test #103: pyTestTrajectory ................... Passed 0.60 sec
Start 104: pyTestThreads
101/118 Test #104: pyTestThreads ...................... Passed 1.45 sec
Start 105: testQuery
102/118 Test #105: testQuery .......................... Passed 0.30 sec
Start 106: testMatCalc
103/118 Test #106: testMatCalc ........................ Passed 0.21 sec
Start 107: pyMatCalc
104/118 Test #107: pyMatCalc .......................... Passed 0.50 sec
Start 108: pySimDivPickers
105/118 Test #108: pySimDivPickers .................... Passed 3.02 sec
Start 109: pyRanker
106/118 Test #109: pyRanker ........................... Passed 0.14 sec
Start 110: testChemicalFeatures
107/118 Test #110: testChemicalFeatures ............... Passed 0.30 sec
Start 111: pyFeatures
108/118 Test #111: pyFeatures ......................... Passed 0.30 sec
Start 112: pythonTestDbCLI
109/118 Test #101: pyGraphMolWrap ..................... Passed 8.75 sec
Start 113: pythonTestDirML
110/118 Test #113: pythonTestDirML .................... Passed 6.53 sec
Start 114: pythonTestDirDataStructs
111/118 Test #114: pythonTestDirDataStructs ........... Passed 0.91 sec
Start 115: pythonTestDirDbase
112/118 Test #115: pythonTestDirDbase ................. Passed 0.50 sec
Start 116: pythonTestDirSimDivFilters
113/118 Test #116: pythonTestDirSimDivFilters ......... Passed 0.19 sec
Start 117: pythonTestDirVLib
114/118 Test #117: pythonTestDirVLib .................. Passed 0.51 sec
Start 118: pythonTestDirChem
115/118 Test #112: pythonTestDbCLI .................... Passed 12.67 sec
116/118 Test py-boost runtime should be = not >= #75: testDistGeomHelpers ................ Passed 52.92 sec
117/118 Test Conda package rdkit-postgresql downgrades my rdkit conda package #77: testMolAlign ....................... Passed 78.98 sec
118/118 Test #118: pythonTestDirChem ..................***Failed 40.60 sec
Errors while running CTest
....
Ran 4 tests in 0.031s
OK
......
Ran 6 tests in 0.031s
OK
....[16:07:34]
Pre-condition Violation
valence not defined for atoms not associated with molecules
Violation occurred on line 267 in file /home/rdkit/bld/rdkit_1494777495800/work/Code/GraphMol/Atom.cpp
Failed Expression: dp_mol
.
Ran 5 tests in 0.007s
OK
....
Ran 4 tests in 0.006s
OK
..
Ran 2 tests in 0.007s
OK
......................
Ran 22 tests in 0.025s
OK
.....s.................ss
Ran 25 tests in 0.102s
OK (skipped=3)
..s
Ran 3 tests in 0.125s
OK (skipped=1)
...................................
Ran 35 tests in 1.056s
OK
....
Ran 4 tests in 0.013s
OK
.
Ran 1 test in 0.007s
OK
......
Ran 6 tests in 0.025s
OK
...
Ran 3 tests in 0.045s
OK
.ss.ss.......
Ran 13 tests in 0.786s
OK (skipped=4)
...[16:07:38] WARNING: More than one matching pattern found - picking one
[16:07:38] WARNING: More than one matching pattern found - picking one
.[16:07:38] WARNING: More than one matching pattern found - picking one
..
Ran 6 tests in 0.061s
OK
........
Ran 8 tests in 0.084s
OK
.....
Ran 5 tests in 3.380s
OK
[16:07:42] WARNING: Omitted undefined stereo
[16:07:42] WARNING: Proton(s) added/removed
.....
Ran 5 tests in 8.343s
OK
InChI write Summary: 1164 identical, 0 suffix variance, 17 reasonable
InChI read Summary: 620 identical, 0 variance, 561 reasonable variance
....
Ran 4 tests in 2.088s
OK
......
Ran 6 tests in 0.286s
OK
Traceback (most recent call last):
File "UnitTestPandasTools.py", line 12, in
from rdkit.Chem import PandasTools
File "/home/rdkit/bld/rdkit_1494777495800/work/rdkit/Chem/PandasTools.py", line 154, in
from pandas.core import format as fmt # older versions
ImportError: cannot import name format
..
Ran 2 tests in 0.000s
OK
UnitTestDocTestsChem.py:5: DeprecationWarning: The rdkit.Chem.MCS module is deprecated; please use rdkit.Chem.rdFMCS instead.
from rdkit.Chem import MCS, FragmentMatcher, MACCSkeys, Descriptors, TemplateAlign
/home/rdkit/bld/rdkit_1494777495800/work/rdkit/Chem/MCS.py:1: DeprecationWarning: The rdkit.Chem.MCS module is deprecated; please use rdkit.Chem.rdFMCS instead.
This work was funded by Roche and generously donated to the free
.............[16:07:55] WARNING: More than one matching pattern found - picking one
[16:07:55] WARNING: More than one matching pattern found - picking one
........
Ran 21 tests in 0.731s
OK
..
Ran 2 tests in 0.061s
OK
..................
Ran 18 tests in 0.837s
OK
...
Ran 3 tests in 0.073s
OK
........
Ran 8 tests in 0.019s
OK
..
Ran 2 tests in 0.014s
OK
..
Ran 2 tests in 0.011s
OK
.
Ran 1 test in 0.056s
OK
........
Ran 8 tests in 0.001s
OK
...
Ran 3 tests in 0.004s
OK
...
Ran 3 tests in 0.001s
OK
....
Ran 4 tests in 0.003s
OK
......
Ran 6 tests in 0.009s
OK
....
Ran 4 tests in 0.012s
OK
....
Ran 4 tests in 2.571s
OK
..........
Ran 10 tests in 0.037s
OK
.
Ran 1 test in 0.000s
OK
..........
Ran 10 tests in 0.004s
OK
.....
Ran 5 tests in 0.051s
OK
.....................
Ran 21 tests in 3.186s
OK
.
Ran 1 test in 0.000s
OK
...[16:08:05]
Pre-condition Violation
molecule has no conformers
Violation occurred on line 37 in file /home/rdkit/bld/rdkit_1494777495800/work/Code/GraphMol/MolChemicalFeatures/MolChemicalFeature.cpp
Failed Expression: dp_mol->getNumConformers()
.
Ran 4 tests in 0.018s
OK
..
Ran 2 tests in 6.986s
OK
..
Ran 2 tests in 0.075s
OK
...
Ran 3 tests in 0.008s
OK
....
Ran 4 tests in 0.015s
OK
..........
Ran 10 tests in 0.278s
OK
ssssss...s.....
Ran 15 tests in 0.159s
OK (skipped=7)
s
Ran 1 test in 0.000s
OK (skipped=1)
..........
Ran 10 tests in 0.425s
OK
..[16:08:14] reaction has no reactants
[16:08:14] reaction has no products
[16:08:14] initialization failed
[16:08:14] reaction has no reactants
[16:08:14] reaction has no products
.
Ran 3 tests in 0.020s
OK
................[16:08:14] ERROR:
[16:08:14] ERROR:
.
Ran 17 tests in 0.026s
OK
!!! TEST FAILURE: python UnitTestPandasTools.py {}
Exception TypeError: "'NoneType' object is not callable" in <function _removeHandlerRef at 0x7f4b48a6b668> ignored
99% tests passed, 1 tests failed out of 118
Total Test time (real) = 115.91 sec
The following tests FAILED:
118 - pythonTestDirChem (Failed)
BUILD START: rdkit-conda_version-np111py27_1
(actual version deferred until further download or env creation)
The following NEW packages will be INSTALLED:
boost: 1.56.0-py27_3 local
bzip2: 1.0.6-3
cairo: 1.14.6-nox_0 local [nox]
cmake: 3.6.3-0
curl: 7.52.1-0
eigen: 3.2.8-2 local
expat: 2.1.0-0
fontconfig: 2.11.1-6
freetype: 2.5.5-2
jbig: 2.1-0
jpeg: 9b-0
libiconv: 1.14-0
libpng: 1.6.27-0
libtiff: 4.0.6-3
libxml2: 2.9.4-0
mkl: 2017.0.1-0
ncurses: 5.9-10
nox: 1.0-0 local
numpy: 1.11.3-py27_0
olefile: 0.44-py27_0
openssl: 1.0.2k-2
pandas: 0.20.1-np111py27_0
pillow: 4.1.1-py27_0
pip: 9.0.1-py27_1
pixman: 0.32.6-0
pkg-config: 0.28-1
python: 2.7.13-0
python-dateutil: 2.6.0-py27_0
pytz: 2017.2-py27_0
readline: 6.2-2
requests: 2.14.2-py27_0
setuptools: 27.2.0-py27_0
six: 1.10.0-py27_0
sqlite: 3.13.0-0
tk: 8.5.18-0
wheel: 0.29.0-py27_0
xz: 5.2.2-1
zlib: 1.2.8-3
Applying patch: u'/home/rdkit/conda-rdkit/rdkit/rdpaths.patch'
Patch level ambiguous, selecting least deep
BUILD START (revised): rdkit-conda_version-np111py27_1
Package: rdkit-conda_version-np111py27_1
source tree in: /home/rdkit/bld/rdkit_1494777495800/work
Traceback (most recent call last):
File "/home/rdkit/miniconda/bin/conda-build", line 6, in
sys.exit(conda_build.cli.main_build.main())
File "/home/rdkit/miniconda/lib/python2.7/site-packages/conda_build/cli/main_build.py", line 334, in main
execute(sys.argv[1:])
File "/home/rdkit/miniconda/lib/python2.7/site-packages/conda_build/cli/main_build.py", line 325, in execute
noverify=args.no_verify)
File "/home/rdkit/miniconda/lib/python2.7/site-packages/conda_build/api.py", line 97, in build
need_source_download=need_source_download, config=config)
File "/home/rdkit/miniconda/lib/python2.7/site-packages/conda_build/build.py", line 1518, in build_tree
config=config)
File "/home/rdkit/miniconda/lib/python2.7/site-packages/conda_build/build.py", line 1143, in build
utils.check_call_env(cmd, env=env, cwd=src_dir)
File "/home/rdkit/miniconda/lib/python2.7/site-packages/conda_build/utils.py", line 628, in check_call_env
return _func_defaulting_env_to_os_environ(subprocess.check_call, *popenargs, **kwargs)
File "/home/rdkit/miniconda/lib/python2.7/site-packages/conda_build/utils.py", line 624, in _func_defaulting_env_to_os_environ
return func(_args, **kwargs)
File "/home/rdkit/miniconda/lib/python2.7/subprocess.py", line 186, in check_call
raise CalledProcessError(retcode, cmd)
subprocess.CalledProcessError: Command '['/bin/bash', '-x', '-e', '/home/rdkit/bld/rdkit_1494777495800/work/conda_build.sh']' returned non-zero exit status 8
The command '/bin/sh -c conda build boost --quiet --no-anaconda-upload && conda build nox --quiet --no-anaconda-upload && conda build cairo_nox --quiet --no-anaconda-upload && conda build cairocffi --quiet --no-anaconda-upload && conda build eigen --quiet --no-anaconda-upload && conda build rdkit --quiet --no-anaconda-upload && conda build ncurses --quiet --no-anaconda-upload && conda build postgresql --quiet --no-anaconda-upload && conda build rdkit-postgresql --quiet --no-anaconda-upload && conda build postgresql95 --quiet --no-anaconda-upload && conda build rdkit-postgresql95 --quiet --no-anaconda-upload && CONDA_PY=35 conda build boost --quiet --no-anaconda-upload && CONDA_PY=35 conda build nox --quiet --no-anaconda-upload && CONDA_PY=35 conda build cairo_nox --quiet --no-anaconda-upload && CONDA_PY=35 conda build cairocffi --quiet --no-anaconda-upload && CONDA_PY=35 conda build eigen --quiet --no-anaconda-upload && CONDA_PY=35 conda build rdkit --quiet --no-anaconda-upload && CONDA_PY=35 conda build postgresql --quiet --no-anaconda-upload && CONDA_PY=35 conda build rdkit-postgresql --quiet --no-anaconda-upload && CONDA_PY=35 conda build postgresql95 --quiet --no-anaconda-upload && CONDA_PY=35 conda build rdkit-postgresql95 --quiet --no-anaconda-upload && CONDA_NPY=110 conda build rdkit --quiet --no-anaconda-upload && CONDA_PY=35 CONDA_NPY=110 conda build rdkit --quiet --no-anaconda-upload' returned a non-zero code: 1
[sitzmann@green conda-rdkit]$