unable to run “gn_parse_tidy”

[SimaSohrabi]

During run the “gn_parse_tidy”, Its showing the following error.
Error in sys::exec_internal(find_gnparser(), ...) :
Executing 'C:\Users\DR Gherekhloo\AppData\Roaming\gnparser\gnparser.exe' failed with status 2
df
#> function (x, df1, df2, ncp, log = FALSE)
#> {
#> if (missing(ncp))
#> .Call(C_df, x, df1, df2, log)
#> else .Call(C_dnf, x, df1, df2, ncp, log)
#> }
#> <bytecode: 0x00000000090f84b8>
#> <environment: namespace:stats>

sessionInfo()
R version 4.3.0 beta (2023-04-09 r84208 ucrt)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: Windows 7 x64 (build 7601) Service Pack 1

Matrix products: default

locale:
[1] LC_COLLATE=English_United States.1252 LC_CTYPE=English_United States.1252
[3] LC_MONETARY=English_United States.1252 LC_NUMERIC=C
[5] LC_TIME=English_United States.1252

time zone: Asia/Tehran
tzcode source: internal

attached base packages:
[1] stats graphics grDevices utils datasets methods base

other attached packages:
[1] reprex_2.0.2 rWCVP_1.2.4 rgnparser_0.2.6 RcmdrMisc_2.7-2 sandwich_3.0-2
[6] car_3.1-2 carData_3.0-5

loaded via a namespace (and not attached):
[1] DBI_1.1.3 ada_2.0-5 gridExtra_2.3
[4] readxl_1.4.2 rlang_1.1.0 magrittr_2.0.3
[7] e1071_1.7-13 compiler_4.3.0 RSQLite_2.3.1
[10] callr_3.7.3 vctrs_0.6.1 stringr_1.5.0
[13] pkgconfig_2.0.3 fastmap_1.1.1 backports_1.4.1
[16] utf8_1.2.3 rmarkdown_2.21 prodlim_2023.03.31
[19] tzdb_0.3.0 ps_1.7.5 haven_2.5.2
[22] purrr_1.0.1 bit_4.0.5 xfun_0.38
[25] cachem_1.0.7 jsonlite_1.8.4 blob_1.2.4
[28] styler_1.9.1 parallel_4.3.0 cluster_2.1.4
[31] R6_2.5.1 stringi_1.7.12 parallelly_1.35.0
[34] rpart_4.1.19 cellranger_1.1.0 Rcpp_1.0.10
[37] knitr_1.42 future.apply_1.10.0 zoo_1.8-11
[40] R.utils_2.12.2 base64enc_0.1-3 readr_2.1.4
[43] R.cache_0.16.0 Matrix_1.5-4 splines_4.3.0
[46] nnet_7.3-18 tidyselect_1.2.0 yaml_2.3.7
[49] rstudioapi_0.14 abind_1.4-5 codetools_0.2-19
[52] processx_3.8.0 listenv_0.9.0 lattice_0.21-8
[55] tibble_3.2.1 withr_2.5.0 evaluate_0.20
[58] foreign_0.8-84 future_1.32.0 survival_3.5-5
[61] sf_1.0-12 units_0.8-1 proxy_0.4-27
[64] xml2_1.3.3 pillar_1.9.0 KernSmooth_2.23-20
[67] checkmate_2.1.0 nortest_1.0-4 generics_0.1.3
[70] phonics_1.3.10 rWCVPdata_0.3.1 hms_1.1.3
[73] ggplot2_3.4.2 munsell_0.5.0 scales_1.2.1
[76] ff_4.0.9 globals_0.16.2 xtable_1.8-4
[79] class_7.3-21 glue_1.6.2 RecordLinkage_0.4-12.4
[82] clipr_0.8.0 Hmisc_5.0-1 tools_4.3.0
[85] sys_3.4.1 data.table_1.14.8 forcats_1.0.0
[88] fs_1.6.1 grid_4.3.0 tidyr_1.3.0
[91] ipred_0.9-14 colorspace_2.1-0 htmlTable_2.4.1
[94] Formula_1.2-5 cli_3.6.1 evd_2.3-6.1
[97] fansi_1.0.4 lava_1.7.2.1 gt_0.9.0
[100] dplyr_1.1.1 gtable_0.3.3 R.methodsS3_1.8.2
[103] digest_0.6.31 classInt_0.4-9 htmlwidgets_1.6.2
[106] R.oo_1.25.0 memoise_2.0.1 htmltools_0.5.5
[109] lifecycle_1.0.3 bit64_4.0.5 MASS_7.3-58.4

[joelnitta]

Can you please provide the command (and any associated code) that you tried to run that resulted in the error?

It looks like you have an object called df that you think is a dataframe but is actually a function.

[joelnitta]

As indicated in the value of df in the OP, df is a function from the stats package (https://github.com/rho-devel/rho/blob/bf6c652b826cd892e88630eb35f182b614af52b1/src/library/stats/R/distn.R#L199)

[SimaSohrabi]

Hi, Yes for sure. here is my codes:

setwd("D:/SimaSohrabi/Herbicide resistance")> herbicide_resistant_data<- readXL("herbicide resistant taxon_SS.xlsx",rownames = FALSE, header = TRUE, na = "", sheet = "Data",stringsAsFactors = FALSE)> Taxa <- as.data.frame(unique(herbicide_resistant_data$Taxon))> colnames(Taxa)<-"Taxon"> Taxa$ID_mvk <- seq(1, length(Taxa$Taxon), by=1)> df <- gn_parse_tidy(Taxa$Taxon)Error in sys::exec_internal(find_gnparser(), ...) :

Executing 'C:\Users\DR Gherekhloo\AppData\Roaming\gnparser\gnparser.exe' failed with status 2 Thank you, sima

…

On Wed, May 10, 2023 at 2:20 AM Joel Nitta ***@***.***> wrote: As indicated in the value of df in the OP, df is a function from the stats package ( https://github.com/rho-devel/rho/blob/bf6c652b826cd892e88630eb35f182b614af52b1/src/library/stats/R/distn.R#L199 ) — Reply to this email directly, view it on GitHub <#24 (comment)>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/A7QAZRULNRKDW3YVTMYOPCTXFLC25ANCNFSM6AAAAAAX3OIBIA> . You are receiving this because you authored the thread.Message ID: ***@***.***>

-- Sima Sohrabi PhD (Weed Science ) Ferdowsi Univ. of Mashhad Dept. of Agronomy Faculty of Agriculture P.O.Box:91775-1163 Fax:+98 5118787430 Mashhad IRAN

[joelnitta]

Are you able to run the example code below?

x <- c("Quadrella steyermarkii (Standl.) Iltis & Cornejo",
  "Parus major Linnaeus, 1788", "Helianthus annuus var. texanus")
gn_parse_tidy(x)

[SimaSohrabi]

Hi, No, I can't. The error message is the same.

x <- c("Quadrella steyermarkii (Standl.) Iltis & Cornejo",+ "Parus major Linnaeus, 1788", "Helianthus annuus var. texanus")> gn_parse_tidy(x)Error in sys::exec_internal(find_gnparser(), ...) :

Executing 'C:\Users\DR Gherekhloo\AppData\Roaming\gnparser\gnparser.exe' failed with status 2 gn_parse_tidy <http://localhost:11984/session/bared-pika_reprex_preview.html?viewer_pane=1&capabilities=1&host=http%3A%2F%2F127.0.0.1%3A27095#cb1-2>#> Error in eval(expr, envir, enclos): object 'gn_parse_tidy' not found Thank you

…

On Thu, May 11, 2023 at 11:42 AM Joel Nitta ***@***.***> wrote: Are you able to run the example code below? x <- c("Quadrella steyermarkii (Standl.) Iltis & Cornejo", "Parus major Linnaeus, 1788", "Helianthus annuus var. texanus") gn_parse_tidy(x) — Reply to this email directly, view it on GitHub <#24 (comment)>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/A7QAZRTHNOQOFHAZW7JU4TDXFSNM7ANCNFSM6AAAAAAX3OIBIA> . You are receiving this because you authored the thread.Message ID: ***@***.***>

-- Sima Sohrabi PhD (Weed Science ) Ferdowsi Univ. of Mashhad Dept. of Agronomy Faculty of Agriculture P.O.Box:91775-1163 Fax:+98 5118787430 Mashhad IRAN

[joelnitta]

@SimaSohrabi there have been several changes to the package since you filed this issue. Can you try installing the latest development version with remotes::install_github("ropensci/rgnparser") then try again?