diff --git a/scripts/fastani_in_parallel.sh b/scripts/fastani_in_parallel.sh index ffa4669..b7a95d2 100755 --- a/scripts/fastani_in_parallel.sh +++ b/scripts/fastani_in_parallel.sh @@ -14,6 +14,15 @@ # more details. You should have received a copy of the GNU General Public License along with # Bacsort. If not, see . +# Check for fastANI +if command -v fastANI >/dev/null 2>&1 ; then + echo "fastANI found" + echo "version: $(fastANI -v)" +else + echo "Error: fastANI not found - please install fastANI and try again" + exit +fi + mkdir -p tree printf "\n" diff --git a/scripts/fastani_with_slurm.sh b/scripts/fastani_with_slurm.sh index c3b0aed..fa35a6b 100755 --- a/scripts/fastani_with_slurm.sh +++ b/scripts/fastani_with_slurm.sh @@ -14,6 +14,15 @@ # more details. You should have received a copy of the GNU General Public License along with # Bacsort. If not, see . +# Check for fastANI +if command -v fastANI >/dev/null 2>&1 ; then + echo "fastANI found" + echo "version: $(fastANI -v)" +else + echo "Error: fastANI not found - please install fastANI and try again" + exit +fi + group_count=32 mkdir -p tree