From 6b4e991cfccc67fa52729d161544d1959b3e0a47 Mon Sep 17 00:00:00 2001 From: Kostya HPC Date: Mon, 11 Jun 2018 20:27:53 -0400 Subject: [PATCH 01/18] added a workflow for InfereCLaDR. still unfinished --- inferelator_ng/inferecladr_workflow.py | 80 ++++++++++++++++++++++++++ yeast_inferecladr_workflow_runner.py | 22 +++++++ 2 files changed, 102 insertions(+) create mode 100644 inferelator_ng/inferecladr_workflow.py create mode 100644 yeast_inferecladr_workflow_runner.py diff --git a/inferelator_ng/inferecladr_workflow.py b/inferelator_ng/inferecladr_workflow.py new file mode 100644 index 0000000..4cb666d --- /dev/null +++ b/inferelator_ng/inferecladr_workflow.py @@ -0,0 +1,80 @@ +import numpy as np +import os +from . import workflow +import design_response_translation #added python design_response +from tfa import TFA +from results_processor import ResultsProcessor +import mi_R +import bbsr_python +import datetime +from kvsstcp.kvsclient import KVSClient +import pandas as pd +from . import utils +from bbsr_tfa_workflow import BBSR_TFA_Workflow +from prior_gs_split_workflow import PriorGoldStandardSplitWorkflowBase +from prior_gs_split_workflow import ResultsProcessorForGoldStandardSplit + + +# Connect to the key value store service (its location is found via an +# environment variable that is set when this is started vid kvsstcp.py +# --execcmd). +kvs = KVSClient() +# Find out which process we are (assumes running under SLURM). +rank = int(os.environ['SLURM_PROCID']) + + +class InfereCLaDR_Workflow(BBSR_TFA_Workflow, PriorGoldStandardSplitWorkflowBase): + expr_clust_files = ["clusters/expr_clust1.tsv", "clusters/expr_clust2.tsv", "clusters/expr_clust3.tsv", "clusters/expr_clust4.tsv"] + meta_clust_files = ["clusters/meta_clust1.tsv", "clusters/meta_clust2.tsv", "clusters/meta_clust3.tsv", "clusters/meta_clust4.tsv"] + seeds = range(42,62) + taus = [0, 5, 10, 20, 30, 40, 50, 60, 70, 80, 90, 100, 120, 140, 160, 200, 250] + + def optimize_taus(self): + run_objs = [] + ## loop over condition clusters + for clust in range(len(self.expr_clust_files)): + print("Optimizing tau for expression cluster {} out of {}".format(clust+1,len(self.expr_clust_files))) + self.expression_matrix_file = self.expr_clust_files[clust] + self.meta_data_file = self.meta_clust_files[clust] + ## loop over splits + for seed in self.seeds: + print("Resampling the prior for seed {} out of {}".format(seed,max(self.seeds))) + self.random_seed = seed + ## loop over taus + for tau in self.taus: + # set self.tau to current value + # set self.prior, expression, etc. + print("Running BBSR for tau = {} ({} out of {})".format(tau, np.concatenate(np.where(tau==np.asarray(self.taus)))+1, len(self.taus))) + self.tau = tau + self.run() + run_result = Results_of_a_Run() + (run_result.clust, run_result.seed, run_result.tau) = (clust, seed, tau) + (run_result.betas, run_result.rescaled_betas) = (self.betas, self.rescaled_betas) + (run_result.priors_data, run_result.gold_standard) = (self.priors_data, self.gold_standard) + run_result.evaluate_tau_run() + import pdb; pdb.set_trace() + run_objs.append(run_result) + + self.results_by_clust_seed_tau = run_objs + + ## with a vector of taus, build custom logic for a final design and response + # loop over bootstraps: + def run_with_full_prior(self): + #self.run(X, Y, etc...) + raise NotImplementedError # implement later + + #define your own emit_results: + def emit_results(self, betas, rescaled_betas, gold_standard, priors): + print "skipping emit results" + #raise NotImplementedError # implement later + +class Results_of_a_Run(object): + + #define precision-recall evaluations for every tau + def evaluate_tau_run(self): + self.results_processor = ResultsProcessorForGoldStandardSplit(self.betas, self.rescaled_betas) + self.combined_confidences = self.results_processor.compute_combined_confidences() + (self.recall, self.precision) = self.results_processor.calculate_precision_recall(self.combined_confidences, self.gold_standard, self.priors_data) + self.aupr = self.results_processor.calculate_aupr(self.recall, self.precision) + + diff --git a/yeast_inferecladr_workflow_runner.py b/yeast_inferecladr_workflow_runner.py new file mode 100644 index 0000000..13aaf50 --- /dev/null +++ b/yeast_inferecladr_workflow_runner.py @@ -0,0 +1,22 @@ +from inferelator_ng.bbsr_tfa_workflow import BBSR_TFA_Workflow +from inferelator_ng.prior_gs_split_workflow import PriorGoldStandardSplitWorkflowBase +from inferelator_ng.inferecladr_workflow import InfereCLaDR_Workflow + +class InfereCLaDR_Workflow_with_Prior_GS_split(InfereCLaDR_Workflow, PriorGoldStandardSplitWorkflowBase): + """ + The class BBSR_TFA_Workflow_with_Prior_GS_split is a case of multiple inheritance, + as it inherits both from BBSR_TFA_Workflow and PriorGoldStandardSplitWorkflowBase + """ + +workflow = InfereCLaDR_Workflow_with_Prior_GS_split() +# Common configuration parameters +workflow.input_dir = 'data/yeast' +#workflow.expression_matrix_file = "clusters/expr_clust1.tsv" +#workflow.meta_data_file = "clusters/meta_clust1.tsv" +workflow.num_bootstraps = 1 +workflow.delTmax = 6000 +workflow.delTmin = 0 +#workflow.tau = 45 +#workflow.run() +workflow.reduce_searchspace=True +workflow.optimize_taus() From 141cc41561bcf17393e0a3b65d083726b8c6dd27 Mon Sep 17 00:00:00 2001 From: Kostya HPC Date: Mon, 11 Jun 2018 20:47:06 -0400 Subject: [PATCH 02/18] added an option to only run for genes that have regulators in the Gold Standard. This significantly reduces run time for yeast and gives the same results in terms of calculated AUPR (which is how I estimate RNA half-lives). --- inferelator_ng/bbsr_tfa_workflow.py | 18 +++++++++++++----- 1 file changed, 13 insertions(+), 5 deletions(-) diff --git a/inferelator_ng/bbsr_tfa_workflow.py b/inferelator_ng/bbsr_tfa_workflow.py index 6775d40..3b574ff 100644 --- a/inferelator_ng/bbsr_tfa_workflow.py +++ b/inferelator_ng/bbsr_tfa_workflow.py @@ -24,6 +24,8 @@ class BBSR_TFA_Workflow(workflow.WorkflowBase): + reduce_searchspace = False + def run(self): """ Execute workflow, after all configuration. @@ -36,8 +38,14 @@ def run(self): self.get_data() self.compute_common_data() self.compute_activity() - betas = [] - rescaled_betas = [] + if self.reduce_searchspace == True: + gs_genes = self.gold_standard.index.tolist() + resp_genes = self.response.index.tolist() + genes_reduced = list(set.intersection(set(gs_genes), set(resp_genes))) + self.response = self.response.loc[genes_reduced,:] + self.priors_data = self.priors_data.loc[genes_reduced,:] + self.betas = [] + self.rescaled_betas = [] for idx, bootstrap in enumerate(self.get_bootstraps()): print('Bootstrap {} of {}'.format((idx + 1), self.num_bootstraps)) @@ -53,10 +61,10 @@ def run(self): ownCheck = utils.ownCheck(kvs, rank, chunk=25) current_betas,current_rescaled_betas = self.regression_driver.run(X, Y, self.clr_matrix, self.priors_data,kvs,rank, ownCheck) if rank: continue - betas.append(current_betas) - rescaled_betas.append(current_rescaled_betas) + self.betas.append(current_betas) + self.rescaled_betas.append(current_rescaled_betas) - self.emit_results(betas, rescaled_betas, self.gold_standard, self.priors_data) + self.emit_results(self.betas, self.rescaled_betas, self.gold_standard, self.priors_data) def compute_activity(self): """ From c54248ecb2947dfab878aa14302f58ebce8bd349 Mon Sep 17 00:00:00 2001 From: Kostya HPC Date: Mon, 11 Jun 2018 20:52:21 -0400 Subject: [PATCH 03/18] added a version of calculate_precision_recall which should be used when GS is split into prior and validation set, because in such a case, good predictions that are artificially removed from the validation set should be put at the end of the list of confidence scores. Although maybe the better way to do this would not be to copy/paste and modify that function, but to add an extra small function in the original function, and only change that small function. --- inferelator_ng/prior_gs_split_workflow.py | 33 ++++++++++++++++++++--- 1 file changed, 30 insertions(+), 3 deletions(-) diff --git a/inferelator_ng/prior_gs_split_workflow.py b/inferelator_ng/prior_gs_split_workflow.py index b1fd1f5..81f6bea 100644 --- a/inferelator_ng/prior_gs_split_workflow.py +++ b/inferelator_ng/prior_gs_split_workflow.py @@ -6,8 +6,10 @@ import pandas as pd import numpy as np from . import workflow +from . import results_processor class PriorGoldStandardSplitWorkflowBase(workflow.WorkflowBase): + split_ratio = 0.5 def set_gold_standard_and_priors(self): """ @@ -15,11 +17,11 @@ def set_gold_standard_and_priors(self): from a 50/50 split of the prior. Half of original prior becomes the new prior, the other half becomes the gold standard """ - split_ratio = 0.5 self.priors_data = self.input_dataframe(self.priors_file) prior = pd.melt(self.priors_data.reset_index(), id_vars='index') prior_edges = prior.index[prior.value != 0] - keep = np.random.choice(prior_edges, int(len(prior_edges)*split_ratio), replace=False) + np.random.seed(self.random_seed) + keep = np.random.choice(prior_edges, int(len(prior_edges)*self.split_ratio), replace=False) prior_subsample = prior.copy(deep=True) gs_subsample = prior.copy(deep=True) prior_subsample.loc[prior_edges[~prior_edges.isin(keep)], 'value'] = 0 @@ -27,4 +29,29 @@ def set_gold_standard_and_priors(self): prior_subsample = pd.pivot_table(prior_subsample, index='index', columns='variable', values='value', fill_value=0) gs_subsample = pd.pivot_table(gs_subsample, index='index', columns='variable', values='value', fill_value=0) self.priors_data = prior_subsample - self.gold_standard = gs_subsample \ No newline at end of file + self.gold_standard = gs_subsample + +class ResultsProcessorForGoldStandardSplit(results_processor.ResultsProcessor): + + def calculate_precision_recall(self, combined_confidences, gold_standard, priors_data): + # this code only runs for a positive gold standard, so explicitly transform it using the absolute value: + gold_standard = np.abs(gold_standard) + # filter gold standard + gold_standard_nozero = gold_standard.loc[(gold_standard!=0).any(axis=1), (gold_standard!=0).any(axis=0)] + intersect_index = combined_confidences.index.intersection(gold_standard_nozero.index) + intersect_cols = combined_confidences.columns.intersection(gold_standard_nozero.columns) + gold_standard_filtered = gold_standard_nozero.loc[intersect_index, intersect_cols] + priors_data_filtered = priors_data.loc[intersect_index, intersect_cols] + combined_confidences_filtered = combined_confidences.loc[intersect_index, intersect_cols] + # removing correctly predicted interactions that were removed from GS because GS was split: + combined_confidences_filtered = combined_confidences_filtered*(1-priors_data_filtered.abs()) + # rank from highest to lowest confidence + + sorted_candidates = np.argsort(combined_confidences_filtered.values, axis = None)[::-1] + gs_values = gold_standard_filtered.values.flatten()[sorted_candidates] + #the following mimicks the R function ChristophsPR + precision = np.cumsum(gs_values).astype(float) / np.cumsum([1] * len(gs_values)) + recall = np.cumsum(gs_values).astype(float) / sum(gs_values) + precision = np.insert(precision,0,precision[0]) + recall = np.insert(recall,0,0) + return (recall, precision) From 30817d6960b8ebdfbea3b2c8e4451f49b360786d Mon Sep 17 00:00:00 2001 From: Kostya HPC Date: Thu, 21 Jun 2018 19:48:09 -0400 Subject: [PATCH 04/18] broke calculate_precision_recall up into smaller functions, so that I only need to replace the filtering step (creating filtered gold standard and confidences) the Gold Standard split class --- inferelator_ng/prior_gs_split_workflow.py | 23 +++++------------ inferelator_ng/results_processor.py | 31 ++++++++++++++++------- 2 files changed, 28 insertions(+), 26 deletions(-) diff --git a/inferelator_ng/prior_gs_split_workflow.py b/inferelator_ng/prior_gs_split_workflow.py index 81f6bea..b44e12e 100644 --- a/inferelator_ng/prior_gs_split_workflow.py +++ b/inferelator_ng/prior_gs_split_workflow.py @@ -33,25 +33,14 @@ def set_gold_standard_and_priors(self): class ResultsProcessorForGoldStandardSplit(results_processor.ResultsProcessor): - def calculate_precision_recall(self, combined_confidences, gold_standard, priors_data): + def create_filtered_gold_standard_and_confidences(self, combined_confidences, gold_standard, priors, filter_index, filter_cols): # this code only runs for a positive gold standard, so explicitly transform it using the absolute value: gold_standard = np.abs(gold_standard) - # filter gold standard - gold_standard_nozero = gold_standard.loc[(gold_standard!=0).any(axis=1), (gold_standard!=0).any(axis=0)] - intersect_index = combined_confidences.index.intersection(gold_standard_nozero.index) - intersect_cols = combined_confidences.columns.intersection(gold_standard_nozero.columns) - gold_standard_filtered = gold_standard_nozero.loc[intersect_index, intersect_cols] - priors_data_filtered = priors_data.loc[intersect_index, intersect_cols] - combined_confidences_filtered = combined_confidences.loc[intersect_index, intersect_cols] + gold_standard_filtered = gold_standard.loc[filter_index, filter_cols] + priors_data_filtered = priors.loc[filter_index, filter_cols] + combined_confidences_filtered = combined_confidences.loc[filter_index, filter_cols] # removing correctly predicted interactions that were removed from GS because GS was split: combined_confidences_filtered = combined_confidences_filtered*(1-priors_data_filtered.abs()) # rank from highest to lowest confidence - - sorted_candidates = np.argsort(combined_confidences_filtered.values, axis = None)[::-1] - gs_values = gold_standard_filtered.values.flatten()[sorted_candidates] - #the following mimicks the R function ChristophsPR - precision = np.cumsum(gs_values).astype(float) / np.cumsum([1] * len(gs_values)) - recall = np.cumsum(gs_values).astype(float) / sum(gs_values) - precision = np.insert(precision,0,precision[0]) - recall = np.insert(recall,0,0) - return (recall, precision) + return(combined_confidences_filtered, gold_standard_filtered) + diff --git a/inferelator_ng/results_processor.py b/inferelator_ng/results_processor.py index 31836a0..73c47ce 100644 --- a/inferelator_ng/results_processor.py +++ b/inferelator_ng/results_processor.py @@ -38,25 +38,34 @@ def threshold_and_summarize(self): #Note that the current version is blind to the sign of those betas, so the betas_sign matrix is not used. Later we might want to modify this such that only same-sign interactions count. return thresholded_matrix - def calculate_precision_recall(self, combined_confidences, gold_standard): + def get_nonempty_rows_cols(self, combined_confidences, gold_standard): # this code only runs for a positive gold standard, so explicitly transform it using the absolute value: gold_standard = np.abs(gold_standard) - # filter gold standard + # filter gold standard to exclude columns and rows that are all 0 in the gold standard gold_standard_nozero = gold_standard.loc[(gold_standard!=0).any(axis=1), (gold_standard!=0).any(axis=0)] intersect_index = combined_confidences.index.intersection(gold_standard_nozero.index) intersect_cols = combined_confidences.columns.intersection(gold_standard_nozero.columns) - gold_standard_filtered = gold_standard_nozero.loc[intersect_index, intersect_cols] - combined_confidences_filtered = combined_confidences.loc[intersect_index, intersect_cols] + return (intersect_index, intersect_cols) + + # Filter the combined confidences and the gold standard: + def create_filtered_gold_standard_and_confidences(self, combined_confidences, gold_standard, priors, filter_index, filter_cols): + # this code only runs for a positive gold standard, so explicitly transform it using the absolute value: + gold_standard = np.abs(gold_standard) + gold_standard_filtered = gold_standard.loc[filter_index, filter_cols] + combined_confidences_filtered = combined_confidences.loc[filter_index, filter_cols] # rank from highest to lowest confidence - sorted_candidates = np.argsort(combined_confidences_filtered.values, axis = None)[::-1] - gs_values = gold_standard_filtered.values.flatten()[sorted_candidates] + return (combined_confidences_filtered, gold_standard_filtered) + + def calculate_precision_recall(self, combined_confidences, gold_standard): + sorted_candidates = np.argsort(combined_confidences.values, axis = None)[::-1] + gs_values = gold_standard.values.flatten()[sorted_candidates] #the following mimicks the R function ChristophsPR precision = np.cumsum(gs_values).astype(float) / np.cumsum([1] * len(gs_values)) recall = np.cumsum(gs_values).astype(float) / sum(gs_values) precision = np.insert(precision,0,precision[0]) recall = np.insert(recall,0,0) return (recall, precision) - + def calculate_aupr(self, recall, precision): #using midpoint integration to calculate the area under the curve d_recall = np.diff(recall) @@ -107,9 +116,13 @@ def summarize_network(self, output_dir, gold_standard, priors): betas_stack = self.threshold_and_summarize() combined_confidences.to_csv(os.path.join(output_dir, 'combined_confidences.tsv'), sep = '\t') betas_stack.to_csv(os.path.join(output_dir,'betas_stack.tsv'), sep = '\t') - (recall, precision) = self.calculate_precision_recall(combined_confidences, gold_standard) + priors.to_csv(os.path.join(output_dir,'priors_data.tsv'), sep = '\t') + + (filter_index, filter_cols) = self.get_nonempty_rows_cols(combined_confidences, gold_standard) + (combined_confidences_filtered, gold_standard_filtered) = self.create_filtered_gold_standard_and_confidences(combined_confidences, gold_standard, priors, filter_index, filter_cols) + (recall, precision) = self.calculate_precision_recall(combined_confidences_filtered, gold_standard_filtered) aupr = self.calculate_aupr(recall, precision) self.plot_pr_curve(recall, precision, aupr, output_dir) resc_betas_mean, resc_betas_median = self.mean_and_median(self.rescaled_betas) self.save_network_to_tsv(combined_confidences, resc_betas_median, priors, output_dir) - \ No newline at end of file + From 6c9eb63f0c7a289aaaba35ce1acfa2d59b52aed2 Mon Sep 17 00:00:00 2001 From: Kostya HPC Date: Thu, 21 Jun 2018 19:52:13 -0400 Subject: [PATCH 05/18] added the meta data clusters for the 4 expression condition clusters as well as the gene names for the 5 gene clusters for yeast. note that also expression data cluster files are required, but they probably will not fit on the GitHub server so they would have to be downloaded separately --- data/yeast/clusters/genes_clust1.tsv | 245 +++++++ data/yeast/clusters/genes_clust2.tsv | 409 ++++++++++++ data/yeast/clusters/genes_clust3.tsv | 79 +++ data/yeast/clusters/genes_clust4.tsv | 84 +++ data/yeast/clusters/genes_clust5.tsv | 139 ++++ data/yeast/clusters/meta_clust1.tsv | 472 ++++++++++++++ data/yeast/clusters/meta_clust2.tsv | 779 ++++++++++++++++++++++ data/yeast/clusters/meta_clust3.tsv | 940 +++++++++++++++++++++++++++ data/yeast/clusters/meta_clust4.tsv | 346 ++++++++++ 9 files changed, 3493 insertions(+) create mode 100644 data/yeast/clusters/genes_clust1.tsv create mode 100644 data/yeast/clusters/genes_clust2.tsv create mode 100644 data/yeast/clusters/genes_clust3.tsv create mode 100644 data/yeast/clusters/genes_clust4.tsv create mode 100644 data/yeast/clusters/genes_clust5.tsv create mode 100644 data/yeast/clusters/meta_clust1.tsv create mode 100644 data/yeast/clusters/meta_clust2.tsv create mode 100644 data/yeast/clusters/meta_clust3.tsv create mode 100644 data/yeast/clusters/meta_clust4.tsv diff --git a/data/yeast/clusters/genes_clust1.tsv b/data/yeast/clusters/genes_clust1.tsv new file mode 100644 index 0000000..b455c0e --- /dev/null +++ b/data/yeast/clusters/genes_clust1.tsv @@ -0,0 +1,245 @@ +"YKR009C" +"YGL059W" +"YIL160C" +"YER035W" +"YPL264C" +"YGL121C" +"YGL107C" +"YGR110W" +"YMR291W" +"YBR169C" +"YKL167C" +"YER053C" +"YHR053C" +"YHL032C" +"YML091C" +"YOR338W" +"YMR135C" +"YPR184W" +"YDR516C" +"YGR144W" +"YOR178C" +"YEL021W" +"YER103W" +"YMR257C" +"YDR055W" +"YFR030W" +"YJL088W" +"YOR302W" +"YGL013C" +"YER069W" +"YKR039W" +"YER040W" +"YIL162W" +"YLR303W" +"YPL036W" +"YCR010C" +"YJL089W" +"YMR265C" +"YKL015W" +"YLR237W" +"YKR101W" +"YFR033C" +"YKL187C" +"YPR006C" +"YLR038C" +"YJL063C" +"YOR152C" +"YHR051W" +"YML054C" +"YGL122C" +"YOL064C" +"YGL096W" +"YPR005C" +"YPL057C" +"YLR267W" +"YHR140W" +"YDR502C" +"YDL025C" +"YPL026C" +"YGL055W" +"YHR122W" +"YPR191W" +"YPR151C" +"YOR344C" +"YGR204W" +"YPR001W" +"YDL182W" +"YDR186C" +"YER054C" +"YPL250C" +"YPL092W" +"YGL062W" +"YJL144W" +"YPR111W" +"YBR085C-A" +"YJR078W" +"YDR247W" +"YLR152C" +"YKL163W" +"YHR018C" +"YLL039C" +"YOL140W" +"YIL057C" +"YMR096W" +"YBR067C" +"YOL117W" +"YGL186C" +"YDL054C" +"YPL170W" +"YDR169C" +"YMR095C" +"YAL054C" +"YBR183W" +"YJL079C" +"YDL170W" +"YHR001W-A" +"YBL015W" +"YBR282W" +"YIL164C" +"YFR017C" +"YJR010W" +"YCR005C" +"YOL002C" +"YMR107W" +"YJR048W" +"YIL074C" +"YLR307W" +"YDL004W" +"YEL060C" +"YBR105C" +"YHL036W" +"YGR032W" +"YOR303W" +"YOL131W" +"YLL019C" +"YKL086W" +"YJL071W" +"YHR008C" +"YLR345W" +"YMR303C" +"YEL039C" +"YMR006C" +"YGR059W" +"YKL001C" +"YGL187C" +"YNL052W" +"YDR283C" +"YLL026W" +"YOR070C" +"YHR161C" +"YIL116W" +"YGR270W" +"YOR386W" +"YLR194C" +"YIL033C" +"YFR023W" +"YER091C" +"YOR107W" +"YHR092C" +"YPL201C" +"YKL170W" +"YBL045C" +"YCR021C" +"YJL060W" +"YML116W" +"YMR104C" +"YKL109W" +"YDR342C" +"YNL183C" +"YJR137C" +"YLR142W" +"YDL059C" +"YOL119C" +"YHL021C" +"YCL030C" +"YMR136W" +"YGL180W" +"YKL217W" +"YMR206W" +"YGR250C" +"YMR062C" +"YOL101C" +"YOR348C" +"YDR256C" +"YPL147W" +"YLL055W" +"YNL311C" +"YBL043W" +"YOR324C" +"YDR171W" +"YOR374W" +"YGR236C" +"YFL021W" +"YLR377C" +"YGL205W" +"YNL305C" +"YOR130C" +"YOR065W" +"YJL101C" +"YJR109C" +"YOL147C" +"YDR529C" +"YNL202W" +"YAL060W" +"YGL184C" +"YHR029C" +"YIR014W" +"YGR067C" +"YIL155C" +"YBR072W" +"YPR154W" +"YBR047W" +"YER067W" +"YPL200W" +"YGL117W" +"YBL030C" +"YGL125W" +"YJL037W" +"YDR028C" +"YLR327C" +"YER175C" +"YDR492W" +"YPR065W" +"YNL104C" +"YKR075C" +"YKL043W" +"YPL156C" +"YDR377W" +"YNL054W" +"YDR085C" +"YKL016C" +"YMR145C" +"YCR069W" +"YMR017W" +"YMR246W" +"YBL103C" +"YMR287C" +"YDR258C" +"YDR406W" +"YCL004W" +"YKL010C" +"YBL075C" +"YML007W" +"YGL056C" +"YOL058W" +"YBR145W" +"YBR147W" +"YPL274W" +"YIL165C" +"YER158C" +"YNL277W" +"YBR043C" +"YMR316W" +"YDR035W" +"YLR164W" +"YHR071W" +"YPR167C" +"YER065C" +"YFR049W" +"YEL012W" +"YBR046C" +"YEL041W" +"YIR017C" +"YOR052C" +"YGR161C" diff --git a/data/yeast/clusters/genes_clust2.tsv b/data/yeast/clusters/genes_clust2.tsv new file mode 100644 index 0000000..e6eea1b --- /dev/null +++ b/data/yeast/clusters/genes_clust2.tsv @@ -0,0 +1,409 @@ +"YDR481C" +"YCR081W" +"YLR287C-A" +"YLR286C" +"YKL096W" +"YLR064W" +"YOR271C" +"YBR157C" +"YGR124W" +"YDL061C" +"YOL105C" +"YFL047W" +"YDL184C" +"YDL191W" +"YBR084C-A" +"YBR296C" +"YHR005C" +"YGR279C" +"YAL003W" +"YJL134W" +"YKL211C" +"YLR029C" +"YIL052C" +"YPL131W" +"YJL200C" +"YKR042W" +"YLR300W" +"YGR108W" +"YNR067C" +"YLL051C" +"YFR038W" +"YHL001W" +"YJR123W" +"YLR343W" +"YGR027C" +"YOR272W" +"YHR024C" +"YKL180W" +"YMR301C" +"YLR185W" +"YPL081W" +"YKL081W" +"YNR017W" +"YDR146C" +"YOR355W" +"YGL031C" +"YBL072C" +"YJL148W" +"YBL027W" +"YER102W" +"YGL189C" +"YJL158C" +"YDR127W" +"YKR057W" +"YNR043W" +"YGR085C" +"YDR353W" +"YDR404C" +"YPL189W" +"YGR148C" +"YAL044C" +"YGR214W" +"YML123C" +"YLR396C" +"YER124C" +"YBL068W" +"YBR135W" +"YMR142C" +"YLR075W" +"YAL038W" +"YDR064W" +"YLR268W" +"YER176W" +"YNL301C" +"YOL120C" +"YHR123W" +"YGR177C" +"YLR103C" +"YBR143C" +"YDR354W" +"YLR040C" +"YBR121C" +"YLR274W" +"YLR214W" +"YGL171W" +"YIL069C" +"YOL104C" +"YGR295C" +"YBR154C" +"YFL004W" +"YCL027W" +"YGR211W" +"YNL169C" +"YEL054C" +"YKL205W" +"YML026C" +"YMR242C" +"YMR116C" +"YER073W" +"YNR050C" +"YCR012W" +"YOR128C" +"YDR418W" +"YBL016W" +"YKL178C" +"YGR118W" +"YBR048W" +"YLR179C" +"YGL225W" +"YLR388W" +"YLR056W" +"YDR270W" +"YML063W" +"YKL060C" +"YKR094C" +"YMR230W" +"YER052C" +"YPR145W" +"YEL065W" +"YEL046C" +"YLR344W" +"YBL082C" +"YBR106W" +"YPL016W" +"YCL050C" +"YNL067W" +"YLR048W" +"YCR065W" +"YGR159C" +"YDR012W" +"YNR016C" +"YOR312C" +"YNL178W" +"YMR205C" +"YGR041W" +"YER154W" +"YMR058W" +"YIL018W" +"YOL059W" +"YKL209C" +"YDR341C" +"YHL040C" +"YGR034W" +"YEL063C" +"YMR192W" +"YLR367W" +"YPL106C" +"YDR471W" +"YDR300C" +"YKL096W-A" +"YBL007C" +"YMR199W" +"YPL184C" +"YNR013C" +"YNL283C" +"YDL130W" +"YER055C" +"YIL053W" +"YLR355C" +"YBR249C" +"YMR215W" +"YHL033C" +"YNL066W" +"YML048W" +"YDL127W" +"YJR016C" +"YDL101C" +"YDL083C" +"YJL145W" +"YOL158C" +"YGR055W" +"YMR266W" +"YAR015W" +"YDR309C" +"YLR448W" +"YNR054C" +"YMR290C" +"YLR027C" +"YNL327W" +"YML024W" +"YAL022C" +"YBR218C" +"YOR167C" +"YMR305C" +"YPL143W" +"YPR035W" +"YGR240C" +"YOL039W" +"YLL024C" +"YJL183W" +"YPL249C-A" +"YNL281W" +"YLR034C" +"YGL173C" +"YMR194W" +"YHR020W" +"YJL026W" +"YKR080W" +"YNL124W" +"YGR185C" +"YOR184W" +"YDR025W" +"YDR233C" +"YAR028W" +"YCR053W" +"YBR115C" +"YPL231W" +"YCR018C" +"YDR382W" +"YNL282W" +"YCR031C" +"YER131W" +"YGR040W" +"YAR010C" +"YJL191W" +"YBR248C" +"YMR038C" +"YHR136C" +"YLR325C" +"YLR192C" +"YPL079W" +"YGR221C" +"YOR202W" +"YLR061W" +"YOR222W" +"YMR001C" +"YDR264C" +"YML027W" +"YPR124W" +"YMR300C" +"YOR260W" +"YHL015W" +"YLR333C" +"YOL031C" +"YNL064C" +"YGL202W" +"YBR189W" +"YNL302C" +"YPL163C" +"YPL273W" +"YNR009W" +"YLR264W" +"YML126C" +"YGR180C" +"YIL118W" +"YHR216W" +"YNL096C" +"YER044C-A" +"YKL006W" +"YFR031C-A" +"YLR058C" +"YGL021W" +"YDR408C" +"YDL082W" +"YMR011W" +"YOR382W" +"YDR019C" +"YER086W" +"YAL040C" +"YGL028C" +"YHL047C" +"YML130C" +"YER056C-A" +"YLR449W" +"YLR216C" +"YPL256C" +"YPR119W" +"YEL037C" +"YGR189C" +"YKL029C" +"YBR029C" +"YER090W" +"YOL086C" +"YLR162W" +"YKL152C" +"YDL171C" +"YOR204W" +"YOR383C" +"YIL148W" +"YHR179W" +"YPL086C" +"YDR312W" +"YML073C" +"YGL103W" +"YBL087C" +"YLR044C" +"YOL121C" +"YGL123W" +"YHR025W" +"YHR153C" +"YGL009C" +"YHR098C" +"YNL069C" +"YOR201C" +"YPR058W" +"YER057C" +"YER120W" +"YJL034W" +"YLR447C" +"YKL182W" +"YHR010W" +"YLR359W" +"YLR104W" +"YMR243C" +"YLR042C" +"YNL035C" +"YOR337W" +"YOR280C" +"YER145C" +"YGL106W" +"YNL300W" +"YJL157C" +"YOR043W" +"YKL113C" +"YDR152W" +"YOR096W" +"YGR280C" +"YLR406C" +"YGR234W" +"YDR384C" +"YGL076C" +"YMR120C" +"YBR038W" +"YGL234W" +"YGR192C" +"YNR060W" +"YDL227C" +"YLR452C" +"YOL007C" +"YNL289W" +"YEL017C-A" +"YCL055W" +"YLR180W" +"YDR451C" +"YIL015W" +"YER117W" +"YBR191W" +"YCL064C" +"YOR063W" +"YIL123W" +"YJR147W" +"YNR044W" +"YLR441C" +"YLL034C" +"YPL111W" +"YHR019C" +"YBR031W" +"YLL045C" +"YOR315W" +"YBR078W" +"YEL043W" +"YBR082C" +"YLR340W" +"YGR014W" +"YOR375C" +"YOL040C" +"YOL052C" +"YER070W" +"YBR181C" +"YBR083W" +"YLR074C" +"YOR247W" +"YML052W" +"YBL076C" +"YKL156W" +"YHR203C" +"YMR143W" +"YAR009C" +"YER044C" +"YKL073W" +"YJL194W" +"YGL135W" +"YFL022C" +"YJL078C" +"YGL026C" +"YPL226W" +"YEL040W" +"YDL198C" +"YKL033W-A" +"YJL177W" +"YJR094W-A" +"YDL075W" +"YGL148W" +"YHR174W" +"YHR021C" +"YLR003C" +"YBR196C" +"YOR369C" +"YPL145C" +"YOR234C" +"YGR060W" +"YMR189W" +"YMR015C" +"YHR143W" +"YEL071W" +"YBL092W" +"YBR093C" +"YGR061C" +"YBR158W" +"YMR108W" +"YGR260W" +"YML094W" +"YJL136C" +"YDR281C" +"YOR108W" +"YIL133C" +"YLR167W" +"YGL030W" +"YNL158W" diff --git a/data/yeast/clusters/genes_clust3.tsv b/data/yeast/clusters/genes_clust3.tsv new file mode 100644 index 0000000..7f8b0e2 --- /dev/null +++ b/data/yeast/clusters/genes_clust3.tsv @@ -0,0 +1,79 @@ +"YDL048C" +"YGR267C" +"YHR014W" +"YGL138C" +"YOR264W" +"YDR076W" +"YPL095C" +"YER111C" +"YFL028C" +"YOR032C" +"YMR279C" +"YJR074W" +"YJR079W" +"YJL043W" +"YHL028W" +"YIR031C" +"YPL141C" +"YJR152W" +"YNL240C" +"YOR365C" +"YJR025C" +"YKL185W" +"YDL066W" +"YKL062W" +"YER085C" +"YKL164C" +"YJL038C" +"YIR019C" +"YER063W" +"YDR259C" +"YOR009W" +"YDR497C" +"YIR027C" +"YDR522C" +"YER078C" +"YNL204C" +"YGR138C" +"YML053C" +"YOL024W" +"YMR101C" +"YAL048C" +"YML088W" +"YPR054W" +"YER001W" +"YLL046C" +"YKL095W" +"YIL119C" +"YDR317W" +"YGR119C" +"YNR069C" +"YIL031W" +"YBR256C" +"YBR188C" +"YLL005C" +"YDR179C" +"YNL210W" +"YPL014W" +"YNL078W" +"YCR104W" +"YKL017C" +"YDL179W" +"YPL158C" +"YNL318C" +"YOR273C" +"YLR079W" +"YPR194C" +"YJL153C" +"YBR180W" +"YPL018W" +"YHR035W" +"YIL102C" +"YOR377W" +"YEL073C" +"YHR079C-A" +"YOR255W" +"YER179W" +"YKL198C" +"YIL066C" +"YJR144W" diff --git a/data/yeast/clusters/genes_clust4.tsv b/data/yeast/clusters/genes_clust4.tsv new file mode 100644 index 0000000..93554c7 --- /dev/null +++ b/data/yeast/clusters/genes_clust4.tsv @@ -0,0 +1,84 @@ +"YJL201W" +"YJL196C" +"YGL048C" +"YOL109W" +"YJL166W" +"YLR461W" +"YCR023C" +"YHR049W" +"YNL259C" +"YDR297W" +"YKR052C" +"YGR253C" +"YKL084W" +"YGR033C" +"YEL034W" +"YMR251W-A" +"YER177W" +"YLR108C" +"YJR111C" +"YDR276C" +"YOR020C" +"YMR319C" +"YBR010W" +"YOR306C" +"YOR086C" +"YJL212C" +"YAL068C" +"YOR007C" +"YFR055W" +"YBL102W" +"YNL065W" +"YBR244W" +"YKL008C" +"YPL091W" +"YML028W" +"YMR121C" +"YOR387C" +"YGR209C" +"YBR104W" +"YOL136C" +"YIL011W" +"YJR104C" +"YGR135W" +"YDR368W" +"YNL254C" +"YBL003C" +"YMR186W" +"YDR194C" +"YOR367W" +"YIL056W" +"YDR510W" +"YMR102C" +"YCR082W" +"YHR162W" +"YDR284C" +"YLR099C" +"YJL151C" +"YNL231C" +"YGL159W" +"YHR094C" +"YOR226C" +"YDR011W" +"YLL064C" +"YDR427W" +"YPR138C" +"YDR050C" +"YGL256W" +"YKL196C" +"YLR109W" +"YGL011C" +"YGR035C" +"YER011W" +"YMR314W" +"YKL175W" +"YDR044W" +"YMR092C" +"YJR047C" +"YDR135C" +"YER021W" +"YFR010W" +"YOR153W" +"YHR048W" +"YLR130C" +"YGL255W" diff --git a/data/yeast/clusters/genes_clust5.tsv b/data/yeast/clusters/genes_clust5.tsv new file mode 100644 index 0000000..a21463a --- /dev/null +++ b/data/yeast/clusters/genes_clust5.tsv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diff --git a/data/yeast/clusters/meta_clust1.tsv b/data/yeast/clusters/meta_clust1.tsv new file mode 100644 index 0000000..8306e11 --- /dev/null +++ b/data/yeast/clusters/meta_clust1.tsv @@ -0,0 +1,472 @@ +"isTs" "is1stLast" "prevCol" "del.t" "condName" +TRUE "f" NA 0 "GSM237019" +TRUE "m" "GSM237019" 4.02 "GSM237020" +TRUE "m" "GSM237020" 4.02 "GSM237021" +TRUE "m" "GSM237021" 3.96 "GSM237022" +TRUE "m" "GSM237022" 4.02 "GSM237023" +TRUE "m" "GSM237023" 4.02 "GSM237024" +TRUE "m" "GSM237024" 3.96 "GSM237025" +TRUE "m" "GSM237025" 4.02 "GSM237026" +TRUE "m" "GSM237026" 4.02 "GSM237027" +TRUE "m" "GSM237027" 3.96 "GSM237028" +TRUE "l" "GSM237028" 4.02 "GSM237029" +TRUE "f" NA 0 "GSM237030" +TRUE "m" "GSM237030" 4.0007142857 "GSM237031" +TRUE "m" "GSM237031" 4.0007142857 "GSM237032" +TRUE "m" "GSM237032" 4.0007142857 "GSM237033" +TRUE "m" "GSM237033" 4.0007142857 "GSM237034" +TRUE "m" "GSM237034" 4.0007142857 "GSM237035" +TRUE "m" "GSM237035" 4.0007142857 "GSM237036" +TRUE "m" "GSM237036" 4.0007142857 "GSM237037" +TRUE "m" "GSM237037" 4.0007142857 "GSM237038" +TRUE "m" "GSM237038" 4.0007142857 "GSM237039" +TRUE "m" "GSM237039" 4.0007142857 "GSM237040" +TRUE "m" "GSM237040" 4.0007142857 "GSM237041" +TRUE "m" "GSM237041" 4.0007142857 "GSM237042" +TRUE "m" "GSM237042" 4.0007142857 "GSM237043" +TRUE "m" "GSM237043" 4.0007142857 "GSM237044" +TRUE "m" "GSM237044" 4.0007142857 "GSM237045" +TRUE "m" "GSM237045" 4.0007142857 "GSM237046" +TRUE "m" "GSM237046" 4.0007142857 "GSM237047" +TRUE "m" "GSM237047" 4.0007142857 "GSM237048" +TRUE "m" "GSM237048" 4.0007142857 "GSM237049" +TRUE "m" "GSM237049" 4.0007142857 "GSM237050" +TRUE "m" "GSM237050" 4.0007142857 "GSM237051" +TRUE "m" "GSM237051" 4.0007142857 "GSM237052" +TRUE "m" "GSM237052" 4.0007142857 "GSM237053" +TRUE "m" "GSM237053" 4.0007142857 "GSM237054" +TRUE "m" "GSM237054" 4.0007142857 "GSM237055" +TRUE "m" "GSM237055" 4.0007142857 "GSM237056" +TRUE "m" "GSM237056" 4.0007142857 "GSM237057" +TRUE "m" "GSM237057" 4.0007142857 "GSM237058" +TRUE "m" "GSM237058" 4.0007142857 "GSM237059" +TRUE "m" "GSM237059" 4.0007142857 "GSM237060" +TRUE "m" "GSM237060" 4.0007142857 "GSM237061" +TRUE "m" "GSM237061" 4.0007142857 "GSM237062" +TRUE "m" "GSM237062" 4.0007142857 "GSM237063" +TRUE "m" "GSM237063" 4.0007142857 "GSM237064" +TRUE "m" "GSM237064" 4.0007142857 "GSM237065" +TRUE "l" "GSM237065" 4.0007142857 "GSM237066" +TRUE "f" NA 0 "GSM479732" +TRUE "m" "GSM479732" 30 "GSM479734" +TRUE "l" "GSM479734" 45 "GSM479736" +TRUE "f" NA 0 "GSM479733" +TRUE "m" "GSM479733" 30 "GSM479735" +TRUE "l" "GSM479735" 45 "GSM479737" +TRUE "f" NA 0 "GSM479738" +TRUE "m" "GSM479738" 30 "GSM479741" +TRUE "l" "GSM479741" 45 "GSM479744" +TRUE "f" NA 0 "GSM479739" +TRUE "m" "GSM479739" 30 "GSM479742" +TRUE "l" "GSM479742" 45 "GSM479745" +TRUE "f" NA 0 "GSM479740" +TRUE "m" "GSM479740" 30 "GSM479743" +TRUE "l" "GSM479743" 45 "GSM479746" +FALSE "e" NA 0 "GSM554213" +FALSE "e" NA 0 "GSM554214" +TRUE "f" NA 0 "GSM567774" +TRUE "m" "GSM567774" 246 "GSM567775" +TRUE "m" "GSM567775" 165 "GSM567776" +TRUE "m" "GSM567776" 165 "GSM567777" +TRUE "m" "GSM567777" 294 "GSM567778" +TRUE "m" "GSM567778" 765 "GSM567779" +TRUE "m" "GSM567779" 924 "GSM567780" +TRUE "l" "GSM567780" 678 "GSM567781" +TRUE "f" NA 0 "GSM567782" +TRUE "m" "GSM567782" 2571 "GSM567788" +TRUE "l" "GSM567788" 480 "GSM567789" +FALSE "e" NA 0 "GSM614244" +TRUE "f" NA 0 "GSM564449" +TRUE "m" "GSM564449" 12 "GSM564450" +TRUE "m" "GSM564450" 168 "GSM564452" +TRUE "m" "GSM564452" 300 "GSM564453" +TRUE "m" "GSM564453" 960 "GSM564454" +TRUE "l" "GSM564454" 2880 "GSM564455" +TRUE "f" NA 0 "GSM564456" +TRUE "m" "GSM564456" 12 "GSM564457" +TRUE "m" "GSM564457" 48 "GSM564458" +TRUE "m" "GSM564458" 120 "GSM564459" +TRUE "m" "GSM564459" 300 "GSM564460" +TRUE "m" "GSM564460" 960 "GSM564461" +TRUE "l" "GSM564461" 2880 "GSM564462" +TRUE "f" NA 0 "GSM564463" +TRUE "m" "GSM564463" 12 "GSM564464" +TRUE "m" "GSM564464" 168 "GSM564466" +TRUE "m" "GSM564466" 300 "GSM564467" +TRUE "m" "GSM564467" 960 "GSM564468" +TRUE "l" "GSM564468" 3300 "GSM564469" +TRUE "f" NA 0 "GSM564470" +TRUE "m" "GSM564470" 12 "GSM564471" +TRUE "m" "GSM564471" 168 "GSM564473" +TRUE "m" "GSM564473" 300 "GSM564474" +TRUE "m" "GSM564474" 960 "GSM564475" +TRUE "l" "GSM564475" 3300 "GSM564476" +TRUE "f" NA 0 "GSM743945" +TRUE "m" "GSM743945" 4.0002 "GSM743946" +TRUE "m" "GSM743946" 19.9998 "GSM743951" +TRUE "m" "GSM743951" 4.0002 "GSM743952" +TRUE "m" "GSM743952" 3.9996 "GSM743953" +TRUE "m" "GSM743953" 4.0002 "GSM743954" +TRUE "m" "GSM743954" 4.0002 "GSM743955" +TRUE "m" "GSM743955" 3.9996 "GSM743956" +TRUE "m" "GSM743956" 4.0002 "GSM743957" +TRUE "m" "GSM743957" 4.0002 "GSM743958" +TRUE "m" "GSM743958" 3.9996 "GSM743959" +TRUE "m" "GSM743959" 4.0002 "GSM743960" +TRUE "m" "GSM743960" 4.0002 "GSM743961" +TRUE "m" "GSM743961" 3.9996 "GSM743962" +TRUE "m" "GSM743962" 4.0002 "GSM743963" +TRUE "m" "GSM743963" 4.0002 "GSM743964" +TRUE "m" "GSM743964" 3.9996 "GSM743965" +TRUE "m" "GSM743965" 4.0002 "GSM743966" +TRUE "m" "GSM743966" 4.0002 "GSM743967" +TRUE "m" "GSM743967" 3.9996 "GSM743968" +TRUE "m" "GSM743968" 4.0002 "GSM743969" +TRUE "m" "GSM743969" 4.0002 "GSM743970" +TRUE "m" "GSM743970" 3.9996 "GSM743971" +TRUE "m" "GSM743971" 4.0001844 "GSM743972" +TRUE "m" "GSM743972" 3.999999 "GSM743973" +TRUE "m" "GSM743973" 3.999999 "GSM743974" +TRUE "l" "GSM743974" 3.999999 "GSM743975" +TRUE "f" NA 0 "GSM743977" +TRUE "m" "GSM743977" 4.99998 "GSM743978" +TRUE "m" "GSM743978" 5.00004 "GSM743979" +TRUE "m" "GSM743979" 4.99998 "GSM743980" +TRUE "m" "GSM743980" 4.99998 "GSM743981" +TRUE "m" "GSM743981" 5.00004 "GSM743982" +TRUE "m" "GSM743982" 4.99998 "GSM743983" +TRUE "m" "GSM743983" 4.99998 "GSM743984" +TRUE "m" "GSM743984" 5.00004 "GSM743985" +TRUE "m" "GSM743985" 4.99998 "GSM743986" +TRUE "m" "GSM743986" 4.99998 "GSM743987" +TRUE "m" "GSM743987" 5.00004 "GSM743988" +TRUE "m" "GSM743988" 4.99998 "GSM743989" +TRUE "m" "GSM743989" 4.99998 "GSM743990" +TRUE "m" "GSM743990" 5.00004 "GSM743991" +TRUE "m" "GSM743991" 4.99998 "GSM743992" +TRUE "m" "GSM743992" 25.00002 "GSM743997" +TRUE "m" "GSM743997" 4.99998 "GSM743998" +TRUE "m" "GSM743998" 4.99998 "GSM743999" +TRUE "m" "GSM743999" 5.00004 "GSM744000" +TRUE "m" "GSM744000" 4.99998 "GSM744001" +TRUE "m" "GSM744001" 4.99998 "GSM744002" +TRUE "m" "GSM744002" 5.00004 "GSM744003" +TRUE "m" "GSM744003" 4.99998 "GSM744004" +TRUE "m" "GSM744004" 4.99998 "GSM744005" +TRUE "m" "GSM744005" 5.00004 "GSM744006" +TRUE "m" "GSM744006" 4.99998 "GSM744007" +TRUE "m" "GSM744007" 4.99998 "GSM744008" +TRUE "m" "GSM744008" 5.00004 "GSM744009" +TRUE "m" "GSM744009" 4.99998 "GSM744010" +TRUE "m" "GSM744010" 4.99998 "GSM744011" +TRUE "m" "GSM744011" 5.00004 "GSM744012" +TRUE "m" "GSM744012" 4.99998 "GSM744013" +TRUE "m" "GSM744013" 4.99998 "GSM744014" +TRUE "m" "GSM744014" 5.00004 "GSM744015" +TRUE "m" "GSM744015" 4.99998 "GSM744016" +TRUE "m" "GSM744016" 4.99998 "GSM744017" +TRUE "m" "GSM744017" 5.00004 "GSM744018" +TRUE "m" "GSM744018" 4.99998 "GSM744019" +TRUE "m" "GSM744019" 4.99998 "GSM744020" +TRUE "m" "GSM744020" 5.00004 "GSM744021" +TRUE "m" "GSM744021" 4.99998 "GSM744022" +TRUE "m" "GSM744022" 4.99998 "GSM744023" +TRUE "m" "GSM744023" 5.00004 "GSM744024" +TRUE "l" "GSM744024" 4.99998 "GSM744025" +TRUE "f" NA 0 "GSM744026" +TRUE "m" "GSM744026" 16.2 "GSM744030" +TRUE "m" "GSM744030" 4.2 "GSM744031" +TRUE "m" "GSM744031" 3.6 "GSM744032" +TRUE "m" "GSM744032" 4.2 "GSM744033" +TRUE "m" "GSM744033" 4.2 "GSM744034" +TRUE "m" "GSM744034" 3.6 "GSM744035" +TRUE "m" "GSM744035" 4.2 "GSM744036" +TRUE "m" "GSM744036" 4.2 "GSM744037" +TRUE "m" "GSM744037" 3.6 "GSM744038" +TRUE "m" "GSM744038" 4.2 "GSM744039" +TRUE "m" "GSM744039" 4.2 "GSM744040" +TRUE "m" "GSM744040" 3.6 "GSM744041" +TRUE "m" "GSM744041" 4.2 "GSM744042" +TRUE "m" "GSM744042" 4.2 "GSM744043" +TRUE "m" "GSM744043" 3.6 "GSM744044" +TRUE "m" "GSM744044" 4.2 "GSM744045" +TRUE "m" "GSM744045" 4.2 "GSM744046" +TRUE "m" "GSM744046" 3.6 "GSM744047" +TRUE "m" "GSM744047" 4.2 "GSM744048" +TRUE "m" "GSM744048" 4.2 "GSM744049" +TRUE "m" "GSM744049" 3.6 "GSM744050" +TRUE "m" "GSM744050" 4.2 "GSM744051" +TRUE "m" "GSM744051" 4.2 "GSM744052" +TRUE "m" "GSM744052" 3.6 "GSM744053" +TRUE "m" "GSM744053" 4.2 "GSM744054" +TRUE "m" "GSM744054" 4.2 "GSM744055" +TRUE "l" "GSM744055" 3.6 "GSM744056" +TRUE "f" NA 0 "GSM1338360" +TRUE "l" "GSM1338360" 11520 "GSM1338366" +TRUE "f" NA 0 "GSM1338361" +TRUE "l" "GSM1338361" 11520 "GSM1338367" +TRUE "f" NA 0 "GSM1338362" +TRUE "l" "GSM1338362" 11520 "GSM1338368" +FALSE "e" NA 0 "GSM1005272" +FALSE "e" NA 0 "GSM1005273" +FALSE "e" NA 0 "GSM1005274" +FALSE "e" NA 0 "GSM1005275" +FALSE "e" NA 0 "GSM1005276" +FALSE "e" NA 0 "GSM1005277" +FALSE "e" NA 0 "GSM1005278" +FALSE "e" NA 0 "GSM1005279" +FALSE "e" NA 0 "GSM1005280" +FALSE "e" NA 0 "GSM1005281" +FALSE "e" NA 0 "GSM1005282" +FALSE "e" NA 0 "GSM1005283" +FALSE "e" NA 0 "GSM1005284" +FALSE "e" NA 0 "GSM1005285" +FALSE "e" NA 0 "GSM1005286" +FALSE "e" NA 0 "GSM1005287" +FALSE "e" NA 0 "GSM1005288" +FALSE "e" NA 0 "GSM1005289" +FALSE "e" NA 0 "GSM106371" +FALSE "e" NA 0 "GSM106372" +FALSE "e" NA 0 "GSM106373" +FALSE "e" NA 0 "GSM106374" +FALSE "e" NA 0 "GSM106375" +FALSE "e" NA 0 "GSM106376" +FALSE "e" NA 0 "GSM1155292" +FALSE "e" NA 0 "GSM1155293" +FALSE "e" NA 0 "GSM1155300" +FALSE "e" NA 0 "GSM1155308" +FALSE "e" NA 0 "GSM1155309" +FALSE "e" NA 0 "GSM1155314" +FALSE "e" NA 0 "GSM1155315" +FALSE "e" NA 0 "GSM1155318" +FALSE "e" NA 0 "GSM1155322" +FALSE "e" NA 0 "GSM1155323" +FALSE "e" NA 0 "GSM144220" +FALSE "e" NA 0 "GSM144221" +FALSE "e" NA 0 "GSM144222" +FALSE "e" NA 0 "GSM144223" +FALSE "e" NA 0 "GSM144224" +FALSE "e" NA 0 "GSM144225" +FALSE "e" NA 0 "GSM248450" +FALSE "e" NA 0 "GSM248453" +FALSE "e" NA 0 "GSM248455" +FALSE "e" NA 0 "GSM307424" +FALSE "e" NA 0 "GSM307425" +FALSE "e" NA 0 "GSM307426" +FALSE "e" NA 0 "GSM307469" +FALSE "e" NA 0 "GSM307491" +FALSE "e" NA 0 "GSM307492" +FALSE "e" NA 0 "GSM312527" +FALSE "e" NA 0 "GSM312528" +FALSE "e" NA 0 "GSM312529" +FALSE "e" NA 0 "GSM312530" +FALSE "e" NA 0 "GSM312531" +FALSE "e" NA 0 "GSM312532" +FALSE "e" NA 0 "GSM312533" +FALSE "e" NA 0 "GSM312534" +FALSE "e" NA 0 "GSM312535" +FALSE "e" NA 0 "GSM312536" +FALSE "e" NA 0 "GSM312537" +FALSE "e" NA 0 "GSM312538" +FALSE "e" NA 0 "GSM312539" +FALSE "e" NA 0 "GSM312540" +FALSE "e" NA 0 "GSM312541" +FALSE "e" NA 0 "GSM312542" +FALSE "e" NA 0 "GSM312543" +FALSE "e" NA 0 "GSM312544" +FALSE "e" NA 0 "GSM312545" +FALSE "e" NA 0 "GSM312546" +FALSE "e" NA 0 "GSM312547" +FALSE "e" NA 0 "GSM312548" +FALSE "e" NA 0 "GSM442202" +FALSE "e" NA 0 "GSM442205" +FALSE "e" NA 0 "GSM442206" +FALSE "e" NA 0 "GSM446621" +FALSE "e" NA 0 "GSM446622" +FALSE "e" NA 0 "GSM457288" +FALSE "e" NA 0 "GSM457289" +FALSE "e" NA 0 "GSM457290" +FALSE "e" NA 0 "GSM457291" +FALSE "e" NA 0 "GSM457292" +FALSE "e" NA 0 "GSM457293" +FALSE "e" NA 0 "GSM457294" +FALSE "e" NA 0 "GSM457295" +FALSE "e" NA 0 "GSM457296" +FALSE "e" NA 0 "GSM457297" +FALSE "e" NA 0 "GSM457298" +FALSE "e" NA 0 "GSM505688" +FALSE "e" NA 0 "GSM505689" +FALSE "e" NA 0 "GSM505690" +FALSE "e" NA 0 "GSM505691" +FALSE "e" NA 0 "GSM505692" +FALSE "e" NA 0 "GSM505693" +FALSE "e" NA 0 "GSM505694" +FALSE "e" NA 0 "GSM505695" +FALSE "e" NA 0 "GSM505696" +FALSE "e" NA 0 "GSM516818" +FALSE "e" NA 0 "GSM516820" +FALSE "e" NA 0 "GSM516822" +FALSE "e" NA 0 "GSM516824" +FALSE "e" NA 0 "GSM516825" +FALSE "e" NA 0 "GSM516826" +FALSE "e" NA 0 "GSM516827" +FALSE "e" NA 0 "GSM516828" +FALSE "e" NA 0 "GSM516829" +FALSE "e" NA 0 "GSM517167" +FALSE "e" NA 0 "GSM517168" +FALSE "e" NA 0 "GSM517169" +FALSE "e" NA 0 "GSM517170" +FALSE "e" NA 0 "GSM517171" +FALSE "e" NA 0 "GSM517172" +FALSE "e" NA 0 "GSM517173" +FALSE "e" NA 0 "GSM517174" +FALSE "e" NA 0 "GSM517175" +FALSE "e" NA 0 "GSM517176" +FALSE "e" NA 0 "GSM517177" +FALSE "e" NA 0 "GSM517178" +FALSE "e" NA 0 "GSM517179" +FALSE "e" NA 0 "GSM517180" +FALSE "e" NA 0 "GSM517181" +FALSE "e" NA 0 "GSM517182" +FALSE "e" NA 0 "GSM517183" +FALSE "e" NA 0 "GSM517184" +FALSE "e" NA 0 "GSM517185" +FALSE "e" NA 0 "GSM517186" +FALSE "e" NA 0 "GSM517187" +FALSE "e" NA 0 "GSM517188" +FALSE "e" NA 0 "GSM517189" +FALSE "e" NA 0 "GSM517190" +FALSE "e" NA 0 "GSM530136" +FALSE "e" NA 0 "GSM530139" +FALSE "e" NA 0 "GSM530140" +FALSE "e" NA 0 "GSM530145" +FALSE "e" NA 0 "GSM536876" +FALSE "e" NA 0 "GSM546892" +FALSE "e" NA 0 "GSM546893" +FALSE "e" NA 0 "GSM546894" +FALSE "e" NA 0 "GSM546895" +FALSE "e" NA 0 "GSM546896" +FALSE "e" NA 0 "GSM546897" +FALSE "e" NA 0 "GSM546898" +FALSE "e" NA 0 "GSM546899" +FALSE "e" NA 0 "GSM546900" +FALSE "e" NA 0 "GSM546901" +FALSE "e" NA 0 "GSM546902" +FALSE "e" NA 0 "GSM546903" +FALSE "e" NA 0 "GSM546904" +FALSE "e" NA 0 "GSM546905" +FALSE "e" NA 0 "GSM546906" +FALSE "e" NA 0 "GSM546907" +FALSE "e" NA 0 "GSM550271" +FALSE "e" NA 0 "GSM550272" +FALSE "e" NA 0 "GSM550273" +FALSE "e" NA 0 "GSM550274" +FALSE "e" NA 0 "GSM596042" +FALSE "e" NA 0 "GSM596043" +FALSE "e" NA 0 "GSM596044" +FALSE "e" NA 0 "GSM596048" +FALSE "e" NA 0 "GSM596049" +FALSE "e" NA 0 "GSM596050" +FALSE "e" NA 0 "GSM601597" +FALSE "e" NA 0 "GSM601598" +FALSE "e" NA 0 "GSM601599" +FALSE "e" NA 0 "GSM601600" +FALSE "e" NA 0 "GSM601601" +FALSE "e" NA 0 "GSM601602" +FALSE "e" NA 0 "GSM601603" +FALSE "e" NA 0 "GSM601604" +FALSE "e" NA 0 "GSM601605" +FALSE "e" NA 0 "GSM601609" +FALSE "e" NA 0 "GSM601610" +FALSE "e" NA 0 "GSM601611" +FALSE "e" NA 0 "GSM601612" +FALSE "e" NA 0 "GSM601613" +FALSE "e" NA 0 "GSM601614" +FALSE "e" NA 0 "GSM601615" +FALSE "e" NA 0 "GSM601616" +FALSE "e" NA 0 "GSM601617" +FALSE "e" NA 0 "GSM601618" +FALSE "e" NA 0 "GSM601620" +FALSE "e" NA 0 "GSM671865" +FALSE "e" NA 0 "GSM671866" +FALSE "e" NA 0 "GSM671867" +FALSE "e" NA 0 "GSM671868" +FALSE "e" NA 0 "GSM671869" +FALSE "e" NA 0 "GSM671870" +FALSE "e" NA 0 "GSM671871" +FALSE "e" NA 0 "GSM671872" +FALSE "e" NA 0 "GSM671873" +FALSE "e" NA 0 "GSM671874" +FALSE "e" NA 0 "GSM671875" +FALSE "e" NA 0 "GSM671876" +FALSE "e" NA 0 "GSM713184" +FALSE "e" NA 0 "GSM802331" +FALSE "e" NA 0 "GSM802332" +FALSE "e" NA 0 "GSM802333" +FALSE "e" NA 0 "GSM802334" +FALSE "e" NA 0 "GSM802335" +FALSE "e" NA 0 "GSM802336" +FALSE "e" NA 0 "GSM802337" +FALSE "e" NA 0 "GSM802338" +FALSE "e" NA 0 "GSM802339" +FALSE "e" NA 0 "GSM802343" +FALSE "e" NA 0 "GSM802344" +FALSE "e" NA 0 "GSM802345" +FALSE "e" NA 0 "GSM802346" +FALSE "e" NA 0 "GSM802347" +FALSE "e" NA 0 "GSM802348" +FALSE "e" NA 0 "GSM802349" +FALSE "e" NA 0 "GSM802350" +FALSE "e" NA 0 "GSM802351" +FALSE "e" NA 0 "GSM802352" +FALSE "e" NA 0 "GSM802353" +FALSE "e" NA 0 "GSM802354" +FALSE "e" NA 0 "GSM881406" +FALSE "e" NA 0 "GSM881407" +FALSE "e" NA 0 "GSM881408" +FALSE "e" NA 0 "GSM881409" +FALSE "e" NA 0 "GSM881410" +FALSE "e" NA 0 "GSM881411" +FALSE "e" NA 0 "GSM881412" +FALSE "e" NA 0 "GSM881413" +FALSE "e" NA 0 "GSM881414" +FALSE "e" NA 0 "GSM881415" +FALSE "e" NA 0 "GSM881416" +FALSE "e" NA 0 "GSM881417" +FALSE "e" NA 0 "GSM881418" +FALSE "e" NA 0 "GSM886626" +FALSE "e" NA 0 "GSM886627" +FALSE "e" NA 0 "GSM886628" +FALSE "e" NA 0 "GSM886629" +FALSE "e" NA 0 "GSM886630" +FALSE "e" NA 0 "GSM886631" +FALSE "e" NA 0 "GSM886635" +FALSE "e" NA 0 "GSM886636" +FALSE "e" NA 0 "GSM886637" +FALSE "e" NA 0 "GSM886638" +FALSE "e" NA 0 "GSM886639" +FALSE "e" NA 0 "GSM886640" +FALSE "e" NA 0 "GSM886641" +FALSE "e" NA 0 "GSM886642" +FALSE "e" NA 0 "GSM886643" +FALSE "e" NA 0 "GSM886644" +FALSE "e" NA 0 "GSM886645" +FALSE "e" NA 0 "GSM886646" +FALSE "e" NA 0 "GSM886647" +FALSE "e" NA 0 "GSM886648" +FALSE "e" NA 0 "GSM886649" +FALSE "e" NA 0 "GSM886650" +FALSE "e" NA 0 "GSM886651" +FALSE "e" NA 0 "GSM886652" +FALSE "e" NA 0 "GSM886653" +FALSE "e" NA 0 "GSM886654" +FALSE "e" NA 0 "GSM886655" +FALSE "e" NA 0 "GSM886656" +FALSE "e" NA 0 "GSM886657" +FALSE "e" NA 0 "GSM886658" +FALSE "e" NA 0 "GSM960665" +FALSE "e" NA 0 "GSM960666" +FALSE "e" NA 0 "GSM98273" +FALSE "e" NA 0 "GSM992839" +FALSE "e" NA 0 "GSM1627959" +FALSE "e" NA 0 "GSM1627960" diff --git a/data/yeast/clusters/meta_clust2.tsv b/data/yeast/clusters/meta_clust2.tsv new file mode 100644 index 0000000..649a067 --- /dev/null +++ b/data/yeast/clusters/meta_clust2.tsv @@ -0,0 +1,779 @@ +"isTs" "is1stLast" "prevCol" "del.t" "condName" +TRUE "f" NA 0 "GSM206780" +TRUE "l" "GSM206780" 360 "GSM206779" +FALSE "e" NA 0 "GSM206792" +FALSE "e" NA 0 "GSM218597" +FALSE "e" NA 0 "GSM218612" +FALSE "e" NA 0 "GSM218642" +TRUE "f" NA 0 "GSM307218" +TRUE "m" "GSM307218" 30 "GSM307219" +TRUE "m" "GSM307219" 40 "GSM307220" +TRUE "m" "GSM307220" 40 "GSM307221" +TRUE "l" "GSM307221" 40 "GSM307222" +TRUE "f" NA 0 "GSM307224" +TRUE "m" "GSM307224" 30 "GSM307225" +TRUE "m" "GSM307225" 40 "GSM307226" +TRUE "m" "GSM307226" 40 "GSM307227" +TRUE "l" "GSM307227" 40 "GSM307228" +TRUE "f" NA 0 "GSM307230" +TRUE "m" "GSM307230" 5 "GSM307231" +TRUE "m" "GSM307231" 5 "GSM307232" +TRUE "m" "GSM307232" 5 "GSM307233" +TRUE "m" "GSM307233" 5 "GSM307234" +TRUE "m" "GSM307234" 10 "GSM307235" +TRUE "m" "GSM307235" 10 "GSM307236" +TRUE "m" "GSM307236" 10 "GSM307237" +TRUE "l" "GSM307237" 10 "GSM307238" +TRUE "f" NA 0 "GSM307240" +TRUE "m" "GSM307240" 5 "GSM307241" +TRUE "m" "GSM307241" 5 "GSM307242" +TRUE "m" "GSM307242" 5 "GSM307243" +TRUE "m" "GSM307243" 5 "GSM307244" +TRUE "m" "GSM307244" 10 "GSM307245" +TRUE "l" "GSM307245" 10 "GSM307246" +TRUE "f" NA 0 "GSM307252" +TRUE "m" "GSM307252" 5 "GSM307253" +TRUE "m" "GSM307253" 5 "GSM307254" +TRUE "m" "GSM307254" 10 "GSM307255" +TRUE "m" "GSM307255" 10 "GSM307256" +TRUE "m" "GSM307256" 10 "GSM307257" +TRUE "l" "GSM307257" 10 "GSM307258" +TRUE "f" NA 0 "GSM307261" +TRUE "m" "GSM307261" 5 "GSM307262" +TRUE "m" "GSM307262" 5 "GSM307263" +TRUE "m" "GSM307263" 5 "GSM307264" +TRUE "l" "GSM307264" 10 "GSM307265" +FALSE "e" NA 0 "GSM385479" +FALSE "e" NA 0 "GSM385484" +TRUE "f" NA 0 "GSM385487" +TRUE "m" "GSM385487" 15 "GSM385488" +TRUE "l" "GSM385488" 15 "GSM385489" +TRUE "f" NA 0 "GSM385490" +TRUE "m" "GSM385490" 60 "GSM385491" +TRUE "m" "GSM385491" 120 "GSM385492" +TRUE "l" "GSM385492" 240 "GSM385493" +TRUE "f" NA 0 "GSM399866" +TRUE "l" "GSM399866" 15 "GSM399867" +TRUE "f" NA 0 "GSM399868" +TRUE "l" "GSM399868" 15 "GSM399869" +TRUE "f" NA 0 "GSM399871" +TRUE "l" "GSM399871" 15 "GSM399872" +FALSE "e" NA 0 "GSM421945" +FALSE "e" NA 0 "GSM421946" +TRUE "f" NA 0 "GSM421950" +TRUE "l" "GSM421950" 30 "GSM421952" +TRUE "f" NA 0 "GSM421951" +TRUE "l" "GSM421951" 30 "GSM421953" +TRUE "f" NA 0 "GSM421954" +TRUE "m" "GSM421954" 15 "GSM421956" +TRUE "m" "GSM421956" 15 "GSM421958" +TRUE "l" "GSM421958" 30 "GSM421960" +TRUE "f" NA 0 "GSM421955" +TRUE "m" "GSM421955" 15 "GSM421957" +TRUE "m" "GSM421957" 15 "GSM421959" +TRUE "l" "GSM421959" 30 "GSM421961" +TRUE "f" NA 0 "GSM421962" +TRUE "m" "GSM421962" 30 "GSM421964" +TRUE "l" "GSM421964" 30 "GSM421966" +TRUE "f" NA 0 "GSM421963" +TRUE "m" "GSM421963" 30 "GSM421965" +TRUE "l" "GSM421965" 30 "GSM421967" +TRUE "f" NA 0 "GSM421968" +TRUE "m" "GSM421968" 30 "GSM421970" +TRUE "l" "GSM421970" 30 "GSM421972" +TRUE "f" NA 0 "GSM421969" +TRUE "m" "GSM421969" 30 "GSM421971" +TRUE "l" "GSM421971" 30 "GSM421973" +TRUE "f" NA 0 "GSM421976" +TRUE "l" "GSM421976" 30 "GSM421978" +FALSE "e" NA 0 "GSM421979" +FALSE "e" NA 0 "GSM434019" +FALSE "e" NA 0 "GSM554211" +FALSE "e" NA 0 "GSM554212" +FALSE "e" NA 0 "GSM554216" +FALSE "e" NA 0 "GSM554219" +FALSE "e" NA 0 "GSM554220" +FALSE "e" NA 0 "GSM567786" +TRUE "f" NA 0 "GSM596853" +TRUE "m" "GSM596853" 45 "GSM596855" +TRUE "m" "GSM596855" 45 "GSM596856" +TRUE "l" "GSM596856" 90 "GSM596854" +TRUE "f" NA 0 "GSM596857" +TRUE "m" "GSM596857" 45 "GSM596859" +TRUE "m" "GSM596859" 45 "GSM596860" +TRUE "l" "GSM596860" 90 "GSM596858" +TRUE "f" NA 0 "GSM596861" +TRUE "m" "GSM596861" 90 "GSM596864" +TRUE "l" "GSM596864" 90 "GSM596862" +TRUE "f" NA 0 "GSM596865" +TRUE "m" "GSM596865" 90 "GSM596868" +TRUE "l" "GSM596868" 90 "GSM596866" +TRUE "f" NA 0 "GSM596869" +TRUE "m" "GSM596869" 45 "GSM596871" +TRUE "m" "GSM596871" 45 "GSM596872" +TRUE "l" "GSM596872" 90 "GSM596870" +TRUE "f" NA 0 "GSM596873" +TRUE "m" "GSM596873" 45 "GSM596875" +TRUE "m" "GSM596875" 45 "GSM596876" +TRUE "l" "GSM596876" 90 "GSM596874" +TRUE "f" NA 0 "GSM614229" +TRUE "m" "GSM614229" 15 "GSM614231" +TRUE "l" "GSM614231" 30 "GSM614233" +TRUE "f" NA 0 "GSM614230" +TRUE "m" "GSM614230" 15 "GSM614232" +TRUE "l" "GSM614232" 30 "GSM614234" +TRUE "f" NA 0 "GSM614235" +TRUE "m" "GSM614235" 15 "GSM614237" +TRUE "l" "GSM614237" 30 "GSM614239" +TRUE "f" NA 0 "GSM614236" +TRUE "m" "GSM614236" 15 "GSM614238" +TRUE "l" "GSM614238" 30 "GSM614240" +TRUE "f" NA 0 "GSM614241" +TRUE "m" "GSM614241" 15 "GSM614243" +TRUE "l" "GSM614243" 30 "GSM614245" +FALSE "e" NA 0 "GSM614246" +FALSE "e" NA 0 "GSM630778" +TRUE "f" NA 0 "GSM630779" +TRUE "m" "GSM630779" 15 "GSM630780" +TRUE "l" "GSM630780" 30 "GSM630781" +TRUE "f" NA 0 "GSM630782" +TRUE "l" "GSM630782" 45 "GSM630784" +TRUE "f" NA 0 "GSM673317" +TRUE "m" "GSM673317" 15 "GSM673320" +TRUE "m" "GSM673320" 20 "GSM673323" +TRUE "l" "GSM673323" 20 "GSM673326" +TRUE "f" NA 0 "GSM673324" +TRUE "l" "GSM673324" 20 "GSM673327" +TRUE "f" NA 0 "GSM673319" +TRUE "m" "GSM673319" 15 "GSM673322" +TRUE "m" "GSM673322" 20 "GSM673325" +TRUE "l" "GSM673325" 20 "GSM673328" +FALSE "e" NA 0 "GSM826840" +FALSE "e" NA 0 "GSM842092" +FALSE "e" NA 0 "GSM842093" +FALSE "e" NA 0 "GSM842099" +TRUE "f" NA 0 "GSM1374163" +TRUE "m" "GSM1374163" 20 "GSM1374164" +TRUE "m" "GSM1374164" 300 "GSM1374179" +TRUE "l" "GSM1374179" 20 "GSM1374180" +TRUE "f" NA 0 "GSM1374181" +TRUE "m" "GSM1374181" 90 "GSM1374189" +TRUE "m" "GSM1374189" 20 "GSM1374190" +TRUE "m" "GSM1374190" 20 "GSM1374191" +TRUE "m" "GSM1374191" 20 "GSM1374192" +TRUE "m" "GSM1374192" 20 "GSM1374193" +TRUE "m" "GSM1374193" 20 "GSM1374194" +TRUE "m" "GSM1374194" 20 "GSM1374195" +TRUE "l" "GSM1374195" 20 "GSM1374196" +TRUE "f" NA 0 "GSM1374206" +TRUE "m" "GSM1374206" 20 "GSM1374207" +TRUE "m" "GSM1374207" 20 "GSM1374208" +TRUE "m" "GSM1374208" 20 "GSM1374209" +TRUE "m" "GSM1374209" 20 "GSM1374210" +TRUE "m" "GSM1374210" 20 "GSM1374211" +TRUE "l" "GSM1374211" 20 "GSM1374212" +TRUE "f" NA 0 "GSM1374220" +TRUE "m" "GSM1374220" 15 "GSM1374221" +TRUE "m" "GSM1374221" 15 "GSM1374222" +TRUE "m" "GSM1374222" 15 "GSM1374223" +TRUE "m" "GSM1374223" 5 "GSM1374230" +TRUE "m" "GSM1374230" 10 "GSM1374224" +TRUE "m" "GSM1374224" 15 "GSM1374225" +TRUE "m" "GSM1374225" 15 "GSM1374226" +TRUE "m" "GSM1374226" 15 "GSM1374227" +TRUE "m" "GSM1374227" 15 "GSM1374228" +TRUE "l" "GSM1374228" 15 "GSM1374229" +TRUE "f" NA 0 "GSM1374237" +TRUE "m" "GSM1374237" 15 "GSM1374238" +TRUE "m" "GSM1374238" 15 "GSM1374239" +TRUE "m" "GSM1374239" 15 "GSM1374240" +TRUE "m" "GSM1374240" 15 "GSM1374241" +TRUE "m" "GSM1374241" 5 "GSM1374248" +TRUE "m" "GSM1374248" 10 "GSM1374242" +TRUE "m" "GSM1374242" 15 "GSM1374243" +TRUE "m" "GSM1374243" 15 "GSM1374244" +TRUE "m" "GSM1374244" 15 "GSM1374245" +TRUE "m" "GSM1374245" 15 "GSM1374246" +TRUE "l" "GSM1374246" 15 "GSM1374247" +TRUE "f" NA 0 "GSM1374256" +TRUE "m" "GSM1374256" 18 "GSM1374257" +TRUE "m" "GSM1374257" 18 "GSM1374258" +TRUE "m" "GSM1374258" 18 "GSM1374259" +TRUE "m" "GSM1374259" 18 "GSM1374260" +TRUE "m" "GSM1374260" 18 "GSM1374261" +TRUE "m" "GSM1374261" 18 "GSM1374262" +TRUE "m" "GSM1374262" 18 "GSM1374263" +TRUE "m" "GSM1374263" 18 "GSM1374264" +TRUE "m" "GSM1374264" 18 "GSM1374265" +TRUE "m" "GSM1374265" 18 "GSM1374266" +TRUE "m" "GSM1374266" 18 "GSM1374267" +TRUE "l" "GSM1374267" 18 "GSM1374268" +TRUE "f" NA 0 "GSM1374275" +TRUE "m" "GSM1374275" 18 "GSM1374276" +TRUE "m" "GSM1374276" 18 "GSM1374277" +TRUE "m" "GSM1374277" 18 "GSM1374278" +TRUE "m" "GSM1374278" 18 "GSM1374279" +TRUE "m" "GSM1374279" 18 "GSM1374280" +TRUE "m" "GSM1374280" 18 "GSM1374281" +TRUE "m" "GSM1374281" 18 "GSM1374282" +TRUE "m" "GSM1374282" 18 "GSM1374283" +TRUE "m" "GSM1374283" 18 "GSM1374284" +TRUE "m" "GSM1374284" 18 "GSM1374285" +TRUE "m" "GSM1374285" 18 "GSM1374286" +TRUE "m" "GSM1374286" 18 "GSM1374287" +TRUE "l" "GSM1374287" 18 "GSM1374288" +TRUE "f" NA 0 "GSM1374289" +TRUE "m" "GSM1374289" 126 "GSM1374296" +TRUE "m" "GSM1374296" 18 "GSM1374297" +TRUE "m" "GSM1374297" 18 "GSM1374298" +TRUE "m" "GSM1374298" 18 "GSM1374299" +TRUE "m" "GSM1374299" 18 "GSM1374300" +TRUE "m" "GSM1374300" 18 "GSM1374301" +TRUE "m" "GSM1374301" 18 "GSM1374302" +TRUE "m" "GSM1374302" 18 "GSM1374303" +TRUE "m" "GSM1374303" 18 "GSM1374304" +TRUE "m" "GSM1374304" 18 "GSM1374305" +TRUE "m" "GSM1374305" 18 "GSM1374306" +TRUE "m" "GSM1374306" 18 "GSM1374307" +TRUE "l" "GSM1374307" 18 "GSM1374308" +FALSE "e" NA 0 "GSM344188" +FALSE "e" NA 0 "GSM344190" +FALSE "e" NA 0 "GSM344192" +FALSE "e" NA 0 "GSM344194" +FALSE "e" NA 0 "GSM344196" +FALSE "e" NA 0 "GSM344198" +FALSE "e" NA 0 "GSM344200" +FALSE "e" NA 0 "GSM344202" +FALSE "e" NA 0 "GSM344204" +FALSE "e" NA 0 "GSM344206" +FALSE "e" NA 0 "GSM344208" +FALSE "e" NA 0 "GSM344210" +TRUE "f" NA 0 "GSM661239" +TRUE "m" "GSM661239" 5 "GSM661240" +TRUE "m" "GSM661240" 5 "GSM661241" +TRUE "m" "GSM661241" 5 "GSM661242" +TRUE "m" "GSM661242" 10 "GSM661243" +TRUE "m" "GSM661243" 10 "GSM661244" +TRUE "l" "GSM661244" 10 "GSM661245" +TRUE "f" NA 0 "GSM661246" +TRUE "m" "GSM661246" 5 "GSM661247" +TRUE "m" "GSM661247" 5 "GSM661248" +TRUE "m" "GSM661248" 5 "GSM661249" +TRUE "m" "GSM661249" 10 "GSM661250" +TRUE "m" "GSM661250" 10 "GSM661251" +TRUE "l" "GSM661251" 10 "GSM661252" +TRUE "f" NA 0 "GSM661254" +TRUE "m" "GSM661254" 20 "GSM661255" +TRUE "m" "GSM661255" 40 "GSM661256" +TRUE "m" "GSM661256" 20 "GSM661257" +TRUE "m" "GSM661257" 20 "GSM661258" +TRUE "m" "GSM661258" 20 "GSM661259" +TRUE "l" "GSM661259" 40 "GSM661260" +TRUE "f" NA 0 "GSM661262" +TRUE "m" "GSM661262" 20 "GSM661263" +TRUE "m" "GSM661263" 40 "GSM661264" +TRUE "m" "GSM661264" 20 "GSM661265" +TRUE "m" "GSM661265" 20 "GSM661266" +TRUE "m" "GSM661266" 20 "GSM661267" +TRUE "l" "GSM661267" 40 "GSM661268" +TRUE "f" NA 0 "GSM661269" +TRUE "m" "GSM661269" 5 "GSM661270" +TRUE "m" "GSM661270" 5 "GSM661271" +TRUE "m" "GSM661271" 10 "GSM661272" +TRUE "m" "GSM661272" 10 "GSM661273" +TRUE "l" "GSM661273" 10 "GSM661274" +TRUE "f" NA 0 "GSM661276" +TRUE "m" "GSM661276" 5 "GSM661277" +TRUE "m" "GSM661277" 5 "GSM661278" +TRUE "m" "GSM661278" 10 "GSM661279" +TRUE "m" "GSM661279" 10 "GSM661280" +TRUE "l" "GSM661280" 10 "GSM661281" +TRUE "f" NA 0 "GSM661283" +TRUE "m" "GSM661283" 5 "GSM661284" +TRUE "m" "GSM661284" 5 "GSM661285" +TRUE "m" "GSM661285" 10 "GSM661286" +TRUE "m" "GSM661286" 10 "GSM661287" +TRUE "m" "GSM661287" 10 "GSM661288" +TRUE "l" "GSM661288" 10 "GSM661289" +TRUE "f" NA 0 "GSM661290" +TRUE "m" "GSM661290" 5 "GSM661291" +TRUE "m" "GSM661291" 5 "GSM661292" +TRUE "m" "GSM661292" 10 "GSM661293" +TRUE "m" "GSM661293" 10 "GSM661294" +TRUE "m" "GSM661294" 10 "GSM661295" +TRUE "l" "GSM661295" 10 "GSM661296" +TRUE "f" NA 0 "GSM816750" +TRUE "m" "GSM816750" 20 "GSM816751" +TRUE "m" "GSM816751" 100 "GSM816756" +TRUE "m" "GSM816756" 20 "GSM816757" +TRUE "m" "GSM816757" 20 "GSM816758" +TRUE "m" "GSM816758" 20 "GSM816759" +TRUE "m" "GSM816759" 20 "GSM816760" +TRUE "m" "GSM816760" 20 "GSM816761" +TRUE "m" "GSM816761" 20 "GSM816762" +TRUE "l" "GSM816762" 20 "GSM816763" +TRUE "f" NA 0 "GSM816765" +TRUE "m" "GSM816765" 20 "GSM816766" +TRUE "m" "GSM816766" 20 "GSM816767" +TRUE "m" "GSM816767" 20 "GSM816768" +TRUE "m" "GSM816768" 40 "GSM816770" +TRUE "m" "GSM816770" 20 "GSM816771" +TRUE "m" "GSM816771" 40 "GSM816773" +TRUE "m" "GSM816773" 20 "GSM816774" +TRUE "m" "GSM816774" 20 "GSM816775" +TRUE "m" "GSM816775" 20 "GSM816776" +TRUE "m" "GSM816776" 20 "GSM816777" +TRUE "m" "GSM816777" 20 "GSM816778" +TRUE "m" "GSM816778" 20 "GSM816779" +TRUE "m" "GSM816779" 20 "GSM816780" +TRUE "l" "GSM816780" 20 "GSM816781" +TRUE "f" NA 0 "GSM816783" +TRUE "m" "GSM816783" 15 "GSM816784" +TRUE "m" "GSM816784" 15 "GSM816785" +TRUE "m" "GSM816785" 15 "GSM816786" +TRUE "m" "GSM816786" 15 "GSM816787" +TRUE "m" "GSM816787" 15 "GSM816788" +TRUE "m" "GSM816788" 15 "GSM816789" +TRUE "m" "GSM816789" 15 "GSM816790" +TRUE "m" "GSM816790" 15 "GSM816791" +TRUE "m" "GSM816791" 15 "GSM816792" +TRUE "m" "GSM816792" 15 "GSM816793" +TRUE "m" "GSM816793" 15 "GSM816794" +TRUE "m" "GSM816794" 15 "GSM816795" +TRUE "l" "GSM816795" 15 "GSM816796" +TRUE "f" NA 0 "GSM1160045" +TRUE "l" "GSM1160045" 60 "GSM1160048" +TRUE "f" NA 0 "GSM1160046" +TRUE "l" "GSM1160046" 60 "GSM1160049" +TRUE "f" NA 0 "GSM1160047" +TRUE "l" "GSM1160047" 60 "GSM1160050" +TRUE "f" NA 0 "GSM1227266" +TRUE "m" "GSM1227266" 720 "GSM1227269" +TRUE "l" "GSM1227269" 2880 "GSM1227275" +TRUE "f" NA 0 "GSM1227267" +TRUE "m" "GSM1227267" 720 "GSM1227270" +TRUE "l" "GSM1227270" 2880 "GSM1227276" +TRUE "f" NA 0 "GSM1227268" +TRUE "m" "GSM1227268" 720 "GSM1227271" +TRUE "l" "GSM1227271" 2880 "GSM1227277" +TRUE "f" NA 0 "GSM1327173" +TRUE "l" "GSM1327173" 60 "GSM1327179" +TRUE "f" NA 0 "GSM1327175" +TRUE "l" "GSM1327175" 60 "GSM1327181" +TRUE "f" NA 0 "GSM1327177" +TRUE "l" "GSM1327177" 60 "GSM1327183" +FALSE "e" NA 0 "GSM1015516" +FALSE "e" NA 0 "GSM1015517" +FALSE "e" NA 0 "GSM1015518" +FALSE "e" NA 0 "GSM1015519" +FALSE "e" NA 0 "GSM1015520" +FALSE "e" NA 0 "GSM1015521" +FALSE "e" NA 0 "GSM1021233" +FALSE "e" NA 0 "GSM1021234" +FALSE "e" NA 0 "GSM1021235" +FALSE "e" NA 0 "GSM1021236" +FALSE "e" NA 0 "GSM1021237" +FALSE "e" NA 0 "GSM1021238" +FALSE "e" NA 0 "GSM1155294" +FALSE "e" NA 0 "GSM1155295" +FALSE "e" NA 0 "GSM1155298" +FALSE "e" NA 0 "GSM1155302" +FALSE "e" NA 0 "GSM1155310" +FALSE "e" NA 0 "GSM1155311" +FALSE "e" NA 0 "GSM116821" +FALSE "e" NA 0 "GSM116822" +FALSE "e" NA 0 "GSM116823" +FALSE "e" NA 0 "GSM116824" +FALSE "e" NA 0 "GSM116825" +FALSE "e" NA 0 "GSM116826" +FALSE "e" NA 0 "GSM1215193" +FALSE "e" NA 0 "GSM1215194" +FALSE "e" NA 0 "GSM1215195" +FALSE "e" NA 0 "GSM1232975" +FALSE "e" NA 0 "GSM1232976" +FALSE "e" NA 0 "GSM1232977" +FALSE "e" NA 0 "GSM1232980" +FALSE "e" NA 0 "GSM1282758" +FALSE "e" NA 0 "GSM1282759" +FALSE "e" NA 0 "GSM1282760" +FALSE "e" NA 0 "GSM1313452" +FALSE "e" NA 0 "GSM1313453" +FALSE "e" NA 0 "GSM1313454" +FALSE "e" NA 0 "GSM1323015" +FALSE "e" NA 0 "GSM1323016" +FALSE "e" NA 0 "GSM1323017" +FALSE "e" NA 0 "GSM1323025" +FALSE "e" NA 0 "GSM1323030" +FALSE "e" NA 0 "GSM1323031" +FALSE "e" NA 0 "GSM1323032" +FALSE "e" NA 0 "GSM1440286" +FALSE "e" NA 0 "GSM1440287" +FALSE "e" NA 0 "GSM1440288" +FALSE "e" NA 0 "GSM1500720" +FALSE "e" NA 0 "GSM1500721" +FALSE "e" NA 0 "GSM1500722" +FALSE "e" NA 0 "GSM1500725" +FALSE "e" NA 0 "GSM1500726" +FALSE "e" NA 0 "GSM1500727" +FALSE "e" NA 0 "GSM1500728" +FALSE "e" NA 0 "GSM1500729" +FALSE "e" NA 0 "GSM1500730" +FALSE "e" NA 0 "GSM1500731" +FALSE "e" NA 0 "GSM1500732" +FALSE "e" NA 0 "GSM1500733" +FALSE "e" NA 0 "GSM1500736" +FALSE "e" NA 0 "GSM1500737" +FALSE "e" NA 0 "GSM1500738" +FALSE "e" NA 0 "GSM1500739" +FALSE "e" NA 0 "GSM1500740" +FALSE "e" NA 0 "GSM1500741" +FALSE "e" NA 0 "GSM1500742" +FALSE "e" NA 0 "GSM1500743" +FALSE "e" NA 0 "GSM1500744" +FALSE "e" NA 0 "GSM1500745" +FALSE "e" NA 0 "GSM1500746" +FALSE "e" NA 0 "GSM1500747" +FALSE "e" NA 0 "GSM1500748" +FALSE "e" NA 0 "GSM1507485" +FALSE "e" NA 0 "GSM1507486" +FALSE "e" NA 0 "GSM1507487" +FALSE "e" NA 0 "GSM1507489" +FALSE "e" NA 0 "GSM1507490" +FALSE "e" NA 0 "GSM1507493" +FALSE "e" NA 0 "GSM1507495" +FALSE "e" NA 0 "GSM1507496" +FALSE "e" NA 0 "GSM1507497" +FALSE "e" NA 0 "GSM1507498" +FALSE "e" NA 0 "GSM1507499" +FALSE "e" NA 0 "GSM1507500" +FALSE "e" NA 0 "GSM1507501" +FALSE "e" NA 0 "GSM1507502" +FALSE "e" NA 0 "GSM1507503" +FALSE "e" NA 0 "GSM1507504" +FALSE "e" NA 0 "GSM1507505" +FALSE "e" NA 0 "GSM1507506" +FALSE "e" NA 0 "GSM1507507" +FALSE "e" NA 0 "GSM1507508" +FALSE "e" NA 0 "GSM1507509" +FALSE "e" NA 0 "GSM1507510" +FALSE "e" NA 0 "GSM1507511" +FALSE "e" NA 0 "GSM248451" +FALSE "e" NA 0 "GSM248454" +FALSE "e" NA 0 "GSM248456" +FALSE "e" NA 0 "GSM284873" +FALSE "e" NA 0 "GSM290989" +FALSE "e" NA 0 "GSM290990" +FALSE "e" NA 0 "GSM290991" +FALSE "e" NA 0 "GSM291115" +FALSE "e" NA 0 "GSM291116" +FALSE "e" NA 0 "GSM291117" +FALSE "e" NA 0 "GSM291439" +FALSE "e" NA 0 "GSM291445" +FALSE "e" NA 0 "GSM291462" +FALSE "e" NA 0 "GSM291523" +FALSE "e" NA 0 "GSM291524" +FALSE "e" NA 0 "GSM307423" +FALSE "e" NA 0 "GSM307450" +FALSE "e" NA 0 "GSM368434" +FALSE "e" NA 0 "GSM368435" +FALSE "e" NA 0 "GSM368436" +FALSE "e" NA 0 "GSM368438" +FALSE "e" NA 0 "GSM368439" +FALSE "e" NA 0 "GSM368440" +FALSE "e" NA 0 "GSM368441" +FALSE "e" NA 0 "GSM368442" +FALSE "e" NA 0 "GSM368443" +FALSE "e" NA 0 "GSM368444" +FALSE "e" NA 0 "GSM368445" +FALSE "e" NA 0 "GSM373310" +FALSE "e" NA 0 "GSM373312" +FALSE "e" NA 0 "GSM373313" +FALSE "e" NA 0 "GSM387990" +FALSE "e" NA 0 "GSM387991" +FALSE "e" NA 0 "GSM410205" +FALSE "e" NA 0 "GSM410206" +FALSE "e" NA 0 "GSM410207" +FALSE "e" NA 0 "GSM410208" +FALSE "e" NA 0 "GSM414678" +FALSE "e" NA 0 "GSM414679" +FALSE "e" NA 0 "GSM414680" +FALSE "e" NA 0 "GSM414681" +FALSE "e" NA 0 "GSM414682" +FALSE "e" NA 0 "GSM414683" +FALSE "e" NA 0 "GSM425043" +FALSE "e" NA 0 "GSM425044" +FALSE "e" NA 0 "GSM425045" +FALSE "e" NA 0 "GSM434043" +FALSE "e" NA 0 "GSM434044" +FALSE "e" NA 0 "GSM434045" +FALSE "e" NA 0 "GSM434046" +FALSE "e" NA 0 "GSM434048" +FALSE "e" NA 0 "GSM446617" +FALSE "e" NA 0 "GSM446619" +FALSE "e" NA 0 "GSM446620" +FALSE "e" NA 0 "GSM446629" +FALSE "e" NA 0 "GSM446630" +FALSE "e" NA 0 "GSM446631" +FALSE "e" NA 0 "GSM446632" +FALSE "e" NA 0 "GSM457184" +FALSE "e" NA 0 "GSM457299" +FALSE "e" NA 0 "GSM457300" +FALSE "e" NA 0 "GSM457761" +FALSE "e" NA 0 "GSM457762" +FALSE "e" NA 0 "GSM457763" +FALSE "e" NA 0 "GSM457764" +FALSE "e" NA 0 "GSM457765" +FALSE "e" NA 0 "GSM457766" +FALSE "e" NA 0 "GSM457767" +FALSE "e" NA 0 "GSM457768" +FALSE "e" NA 0 "GSM457769" +FALSE "e" NA 0 "GSM457770" +FALSE "e" NA 0 "GSM457771" +FALSE "e" NA 0 "GSM457772" +FALSE "e" NA 0 "GSM457774" +FALSE "e" NA 0 "GSM457776" +FALSE "e" NA 0 "GSM457777" +FALSE "e" NA 0 "GSM457778" +FALSE "e" NA 0 "GSM459756" +FALSE "e" NA 0 "GSM459757" +FALSE "e" NA 0 "GSM486536" +FALSE "e" NA 0 "GSM486544" +FALSE "e" NA 0 "GSM502520" +FALSE "e" NA 0 "GSM502521" +FALSE "e" NA 0 "GSM502526" +FALSE "e" NA 0 "GSM502527" +FALSE "e" NA 0 "GSM502528" +FALSE "e" NA 0 "GSM502529" +FALSE "e" NA 0 "GSM502530" +FALSE "e" NA 0 "GSM502531" +FALSE "e" NA 0 "GSM502532" +FALSE "e" NA 0 "GSM502533" +FALSE "e" NA 0 "GSM502534" +FALSE "e" NA 0 "GSM502535" +FALSE "e" NA 0 "GSM502536" +FALSE "e" NA 0 "GSM502537" +FALSE "e" NA 0 "GSM510392" +FALSE "e" NA 0 "GSM510393" +FALSE "e" NA 0 "GSM510394" +FALSE "e" NA 0 "GSM510395" +FALSE "e" NA 0 "GSM510396" +FALSE "e" NA 0 "GSM510397" +FALSE "e" NA 0 "GSM530135" +FALSE "e" NA 0 "GSM536877" +FALSE "e" NA 0 "GSM536880" +FALSE "e" NA 0 "GSM536881" +FALSE "e" NA 0 "GSM543938" +FALSE "e" NA 0 "GSM543939" +FALSE "e" NA 0 "GSM543940" +FALSE "e" NA 0 "GSM550269" +FALSE "e" NA 0 "GSM550270" +FALSE "e" NA 0 "GSM554227" +FALSE "e" NA 0 "GSM554228" +FALSE "e" NA 0 "GSM554229" +FALSE "e" NA 0 "GSM554230" +FALSE "e" NA 0 "GSM554234" +FALSE "e" NA 0 "GSM561863" +FALSE "e" NA 0 "GSM585197" +FALSE "e" NA 0 "GSM591843" +FALSE "e" NA 0 "GSM591845" +FALSE "e" NA 0 "GSM601078" +FALSE "e" NA 0 "GSM601606" +FALSE "e" NA 0 "GSM601607" +FALSE "e" NA 0 "GSM601608" +FALSE "e" NA 0 "GSM601619" +FALSE "e" NA 0 "GSM612049" +FALSE "e" NA 0 "GSM612050" +FALSE "e" NA 0 "GSM612051" +FALSE "e" NA 0 "GSM612052" +FALSE "e" NA 0 "GSM612053" +FALSE "e" NA 0 "GSM612054" +FALSE "e" NA 0 "GSM612055" +FALSE "e" NA 0 "GSM612056" +FALSE "e" NA 0 "GSM612057" +FALSE "e" NA 0 "GSM612058" +FALSE "e" NA 0 "GSM612059" +FALSE "e" NA 0 "GSM612060" +FALSE "e" NA 0 "GSM612061" +FALSE "e" NA 0 "GSM612062" +FALSE "e" NA 0 "GSM612063" +FALSE "e" NA 0 "GSM612064" +FALSE "e" NA 0 "GSM612065" +FALSE "e" NA 0 "GSM612066" +FALSE "e" NA 0 "GSM642731" +FALSE "e" NA 0 "GSM642732" +FALSE "e" NA 0 "GSM642733" +FALSE "e" NA 0 "GSM642734" +FALSE "e" NA 0 "GSM642735" +FALSE "e" NA 0 "GSM642736" +FALSE "e" NA 0 "GSM642737" +FALSE "e" NA 0 "GSM642738" +FALSE "e" NA 0 "GSM642739" +FALSE "e" NA 0 "GSM642740" +FALSE "e" NA 0 "GSM642741" +FALSE "e" NA 0 "GSM642742" +FALSE "e" NA 0 "GSM662923" +FALSE "e" NA 0 "GSM662924" +FALSE "e" NA 0 "GSM662925" +FALSE "e" NA 0 "GSM662926" +FALSE "e" NA 0 "GSM662927" +FALSE "e" NA 0 "GSM667872" +FALSE "e" NA 0 "GSM667873" +FALSE "e" NA 0 "GSM667874" +FALSE "e" NA 0 "GSM667875" +FALSE "e" NA 0 "GSM667876" +FALSE "e" NA 0 "GSM667877" +FALSE "e" NA 0 "GSM667878" +FALSE "e" NA 0 "GSM667879" +FALSE "e" NA 0 "GSM667880" +FALSE "e" NA 0 "GSM667881" +FALSE "e" NA 0 "GSM667882" +FALSE "e" NA 0 "GSM667884" +FALSE "e" NA 0 "GSM667885" +FALSE "e" NA 0 "GSM667886" +FALSE "e" NA 0 "GSM667887" +FALSE "e" NA 0 "GSM667888" +FALSE "e" NA 0 "GSM667889" +FALSE "e" NA 0 "GSM673309" +FALSE "e" NA 0 "GSM673310" +FALSE "e" NA 0 "GSM673311" +FALSE "e" NA 0 "GSM673312" +FALSE "e" NA 0 "GSM673313" +FALSE "e" NA 0 "GSM673314" +FALSE "e" NA 0 "GSM673315" +FALSE "e" NA 0 "GSM673316" +FALSE "e" NA 0 "GSM721114" +FALSE "e" NA 0 "GSM721127" +FALSE "e" NA 0 "GSM724662" +FALSE "e" NA 0 "GSM724663" +FALSE "e" NA 0 "GSM724664" +FALSE "e" NA 0 "GSM724665" +FALSE "e" NA 0 "GSM724666" +FALSE "e" NA 0 "GSM724667" +FALSE "e" NA 0 "GSM724668" +FALSE "e" NA 0 "GSM724669" +FALSE "e" NA 0 "GSM724670" +FALSE "e" NA 0 "GSM724671" +FALSE "e" NA 0 "GSM725556" +FALSE "e" NA 0 "GSM725557" +FALSE "e" NA 0 "GSM725558" +FALSE "e" NA 0 "GSM725559" +FALSE "e" NA 0 "GSM725560" +FALSE "e" NA 0 "GSM725561" +FALSE "e" NA 0 "GSM725562" +FALSE "e" NA 0 "GSM725563" +FALSE "e" NA 0 "GSM725564" +FALSE "e" NA 0 "GSM725565" +FALSE "e" NA 0 "GSM726007" +FALSE "e" NA 0 "GSM777670" +FALSE "e" NA 0 "GSM777671" +FALSE "e" NA 0 "GSM788348" +FALSE "e" NA 0 "GSM788349" +FALSE "e" NA 0 "GSM788350" +FALSE "e" NA 0 "GSM788351" +FALSE "e" NA 0 "GSM788352" +FALSE "e" NA 0 "GSM788353" +FALSE "e" NA 0 "GSM788354" +FALSE "e" NA 0 "GSM788355" +FALSE "e" NA 0 "GSM788356" +FALSE "e" NA 0 "GSM802340" +FALSE "e" NA 0 "GSM802341" +FALSE "e" NA 0 "GSM802342" +FALSE "e" NA 0 "GSM823351" +FALSE "e" NA 0 "GSM823352" +FALSE "e" NA 0 "GSM823356" +FALSE "e" NA 0 "GSM823357" +FALSE "e" NA 0 "GSM823358" +FALSE "e" NA 0 "GSM823361" +FALSE "e" NA 0 "GSM823362" +FALSE "e" NA 0 "GSM823878" +FALSE "e" NA 0 "GSM823879" +FALSE "e" NA 0 "GSM823880" +FALSE "e" NA 0 "GSM823881" +FALSE "e" NA 0 "GSM854649" +FALSE "e" NA 0 "GSM854650" +FALSE "e" NA 0 "GSM854651" +FALSE "e" NA 0 "GSM854652" +FALSE "e" NA 0 "GSM854653" +FALSE "e" NA 0 "GSM854654" +FALSE "e" NA 0 "GSM871553" +FALSE "e" NA 0 "GSM871554" +FALSE "e" NA 0 "GSM881419" +FALSE "e" NA 0 "GSM881862" +FALSE "e" NA 0 "GSM881863" +FALSE "e" NA 0 "GSM881864" +FALSE "e" NA 0 "GSM881865" +FALSE "e" NA 0 "GSM881866" +FALSE "e" NA 0 "GSM881867" +FALSE "e" NA 0 "GSM897349" +FALSE "e" NA 0 "GSM907116" +FALSE "e" NA 0 "GSM907117" +FALSE "e" NA 0 "GSM907118" +FALSE "e" NA 0 "GSM907121" +FALSE "e" NA 0 "GSM907122" +FALSE "e" NA 0 "GSM907123" +FALSE "e" NA 0 "GSM907124" +FALSE "e" NA 0 "GSM907125" +FALSE "e" NA 0 "GSM907126" +FALSE "e" NA 0 "GSM907127" +FALSE "e" NA 0 "GSM907128" +FALSE "e" NA 0 "GSM907129" +FALSE "e" NA 0 "GSM907130" +FALSE "e" NA 0 "GSM907131" +FALSE "e" NA 0 "GSM907132" +FALSE "e" NA 0 "GSM907133" +FALSE "e" NA 0 "GSM907134" +FALSE "e" NA 0 "GSM907135" +FALSE "e" NA 0 "GSM907136" +FALSE "e" NA 0 "GSM907137" +FALSE "e" NA 0 "GSM907138" +FALSE "e" NA 0 "GSM907139" +FALSE "e" NA 0 "GSM907176" +FALSE "e" NA 0 "GSM907177" +FALSE "e" NA 0 "GSM907181" +FALSE "e" NA 0 "GSM907182" +FALSE "e" NA 0 "GSM920568" +FALSE "e" NA 0 "GSM920569" +FALSE "e" NA 0 "GSM920570" +FALSE "e" NA 0 "GSM945927" +FALSE "e" NA 0 "GSM945928" +FALSE "e" NA 0 "GSM945929" +FALSE "e" NA 0 "GSM945930" +FALSE "e" NA 0 "GSM950692" +FALSE "e" NA 0 "GSM950693" +FALSE "e" NA 0 "GSM950694" +FALSE "e" NA 0 "GSM950697" +FALSE "e" NA 0 "GSM950701" +FALSE "e" NA 0 "GSM950702" +FALSE "e" NA 0 "GSM950703" +FALSE "e" NA 0 "GSM950707" +FALSE "e" NA 0 "GSM950708" +FALSE "e" NA 0 "GSM950709" +FALSE "e" NA 0 "GSM954977" +FALSE "e" NA 0 "GSM954978" +FALSE "e" NA 0 "GSM954979" +FALSE "e" NA 0 "GSM954980" +FALSE "e" NA 0 "GSM960661" +FALSE "e" NA 0 "GSM960662" +FALSE "e" NA 0 "GSM960663" +FALSE "e" NA 0 "GSM960664" +FALSE "e" NA 0 "GSM98274" +FALSE "e" NA 0 "GSM992840" +FALSE "e" NA 0 "GSM992841" +FALSE "e" NA 0 "GSM992842" +FALSE "e" NA 0 "GSM992843" +FALSE "e" NA 0 "GSM992844" +FALSE "e" NA 0 "GSM992845" +FALSE "e" NA 0 "GSM992846" +FALSE "e" NA 0 "GSM992847" +FALSE "e" NA 0 "GSM992851" +FALSE "e" NA 0 "GSM992852" +FALSE "e" NA 0 "GSM992853" +FALSE "e" NA 0 "GSM1327172" +FALSE "e" NA 0 "GSM1327174" +FALSE "e" NA 0 "GSM1327176" +FALSE "e" NA 0 "GSM1327178" +FALSE "e" NA 0 "GSM1327180" +FALSE "e" NA 0 "GSM1327182" +FALSE "e" NA 0 "GSM1331740" +FALSE "e" NA 0 "GSM307229" +FALSE "e" NA 0 "GSM307239" diff --git a/data/yeast/clusters/meta_clust3.tsv b/data/yeast/clusters/meta_clust3.tsv new file mode 100644 index 0000000..9c756c6 --- /dev/null +++ b/data/yeast/clusters/meta_clust3.tsv @@ -0,0 +1,940 @@ +"isTs" "is1stLast" "prevCol" "del.t" "condName" +FALSE "e" NA 0 "GSM206777" +TRUE "f" NA 0 "GSM206789" +TRUE "l" "GSM206789" 270 "GSM206791" +TRUE "f" NA 0 "GSM218598" +TRUE "m" "GSM218598" 16 "GSM218599" +TRUE "m" "GSM218599" 16 "GSM218600" +TRUE "m" "GSM218600" 16 "GSM218601" +TRUE "m" "GSM218601" 16 "GSM218602" +TRUE "m" "GSM218602" 16 "GSM218603" +TRUE "m" "GSM218603" 16 "GSM218604" +TRUE "m" "GSM218604" 16 "GSM218605" +TRUE "m" "GSM218605" 16 "GSM218606" +TRUE "m" "GSM218606" 16 "GSM218607" +TRUE "m" "GSM218607" 16 "GSM218608" +TRUE "m" "GSM218608" 16 "GSM218609" +TRUE "m" "GSM218609" 16 "GSM218610" +TRUE "l" "GSM218610" 16 "GSM218611" +TRUE "f" NA 0 "GSM218613" +TRUE "m" "GSM218613" 16 "GSM218614" +TRUE "m" "GSM218614" 16 "GSM218615" +TRUE "m" "GSM218615" 16 "GSM218616" +TRUE "m" "GSM218616" 16 "GSM218617" +TRUE "m" "GSM218617" 16 "GSM218618" +TRUE "m" "GSM218618" 16 "GSM218619" +TRUE "m" "GSM218619" 16 "GSM218620" +TRUE "m" "GSM218620" 16 "GSM218621" +TRUE "m" "GSM218621" 16 "GSM218622" +TRUE "m" "GSM218622" 16 "GSM218623" +TRUE "m" "GSM218623" 16 "GSM218624" +TRUE "m" "GSM218624" 16 "GSM218625" +TRUE "l" "GSM218625" 16 "GSM218626" +TRUE "f" NA 0 "GSM218627" +TRUE "m" "GSM218627" 16 "GSM218628" +TRUE "m" "GSM218628" 16 "GSM218629" +TRUE "m" "GSM218629" 16 "GSM218630" +TRUE "m" "GSM218630" 16 "GSM218631" +TRUE "m" "GSM218631" 16 "GSM218632" +TRUE "m" "GSM218632" 16 "GSM218633" +TRUE "m" "GSM218633" 16 "GSM218634" +TRUE "m" "GSM218634" 16 "GSM218635" +TRUE "m" "GSM218635" 16 "GSM218636" +TRUE "m" "GSM218636" 16 "GSM218637" +TRUE "m" "GSM218637" 16 "GSM218638" +TRUE "m" "GSM218638" 16 "GSM218639" +TRUE "m" "GSM218639" 16 "GSM218640" +TRUE "l" "GSM218640" 16 "GSM218641" +TRUE "f" NA 0 "GSM218643" +TRUE "m" "GSM218643" 16 "GSM218644" +TRUE "m" "GSM218644" 16 "GSM218645" +TRUE "m" "GSM218645" 16 "GSM218646" +TRUE "m" "GSM218646" 16 "GSM218647" +TRUE "m" "GSM218647" 16 "GSM218648" +TRUE "m" "GSM218648" 16 "GSM218649" +TRUE "m" "GSM218649" 16 "GSM218650" +TRUE "m" "GSM218650" 16 "GSM218651" +TRUE "m" "GSM218651" 16 "GSM218652" +TRUE "m" "GSM218652" 16 "GSM218653" +TRUE "m" "GSM218653" 16 "GSM218654" +TRUE "m" "GSM218654" 16 "GSM218655" +TRUE "l" "GSM218655" 16 "GSM218656" +FALSE "e" NA 0 "GSM239508" +FALSE "e" NA 0 "GSM239509" +FALSE "e" NA 0 "GSM307217" +FALSE "e" NA 0 "GSM307223" +TRUE "f" NA 0 "GSM307250" +TRUE "l" "GSM307250" 5 "GSM307251" +FALSE "e" NA 0 "GSM307260" +FALSE "e" NA 0 "GSM356518" +FALSE "e" NA 0 "GSM356528" +TRUE "f" NA 0 "GSM385480" +TRUE "l" "GSM385480" 15 "GSM385481" +TRUE "f" NA 0 "GSM385482" +TRUE "l" "GSM385482" 60 "GSM385483" +FALSE "l" NA 0 "GSM399865" +FALSE "l" NA 0 "GSM399865" +FALSE "l" NA 0 "GSM399865" +TRUE "m" "GSM399865" 15 "GSM399870" +TRUE "l" "GSM399870" 75 "GSM399873" +FALSE "l" NA 0 "GSM399865" +TRUE "m" "GSM399865" 15 "GSM399874" +TRUE "m" "GSM399874" 15 "GSM399875" +TRUE "m" "GSM399875" 15 "GSM399876" +TRUE "l" "GSM399876" 45 "GSM399877" +FALSE "l" NA 0 "GSM399865" +TRUE "m" "GSM399865" 15 "GSM399878" +TRUE "l" "GSM399878" 30 "GSM399879" +FALSE "l" NA 0 "GSM399865" +TRUE "m" "GSM399865" 15 "GSM399880" +TRUE "m" "GSM399880" 15 "GSM399881" +TRUE "m" "GSM399881" 15 "GSM399882" +TRUE "l" "GSM399882" 45 "GSM399883" +FALSE "l" NA 0 "GSM399865" +TRUE "m" "GSM399865" 15 "GSM399884" +TRUE "l" "GSM399884" 30 "GSM399885" +TRUE "f" NA 0 "GSM421939" +TRUE "m" "GSM421939" 15 "GSM421941" +TRUE "l" "GSM421941" 15 "GSM421943" +TRUE "f" NA 0 "GSM421940" +TRUE "m" "GSM421940" 15 "GSM421942" +TRUE "l" "GSM421942" 15 "GSM421944" +TRUE "f" NA 0 "GSM421947" +TRUE "l" "GSM421947" 15 "GSM421949" +FALSE "e" NA 0 "GSM421948" +FALSE "e" NA 0 "GSM421974" +TRUE "f" NA 0 "GSM421975" +TRUE "l" "GSM421975" 30 "GSM421977" +FALSE "e" NA 0 "GSM434015" +FALSE "e" NA 0 "GSM434016" +TRUE "f" NA 0 "GSM434017" +TRUE "l" "GSM434017" 120 "GSM434020" +TRUE "f" NA 0 "GSM434021" +TRUE "l" "GSM434021" 120 "GSM434024" +TRUE "f" NA 0 "GSM434022" +TRUE "l" "GSM434022" 120 "GSM434025" +TRUE "f" NA 0 "GSM434023" +TRUE "l" "GSM434023" 120 "GSM434026" +FALSE "l" NA 0 "GSM554210" +FALSE "l" NA 0 "GSM554210" +FALSE "l" NA 0 "GSM554210" +FALSE "l" NA 0 "GSM554210" +FALSE "l" NA 0 "GSM554210" +TRUE "l" "GSM554210" 30 "GSM554215" +FALSE "l" NA 0 "GSM554210" +FALSE "l" NA 0 "GSM554210" +TRUE "l" "GSM554210" 30 "GSM554217" +FALSE "l" NA 0 "GSM554210" +TRUE "l" "GSM554210" 30 "GSM554218" +FALSE "l" NA 0 "GSM554210" +FALSE "l" NA 0 "GSM554210" +TRUE "f" NA 0 "GSM567783" +TRUE "m" "GSM567783" 361.8 "GSM567784" +TRUE "m" "GSM567784" 390 "GSM567785" +TRUE "l" "GSM567785" 1127.4 "GSM567787" +FALSE "e" NA 0 "GSM596863" +FALSE "e" NA 0 "GSM596867" +TRUE "f" NA 0 "GSM630776" +TRUE "l" "GSM630776" 15 "GSM630777" +FALSE "e" NA 0 "GSM673318" +FALSE "e" NA 0 "GSM673329" +FALSE "e" NA 0 "GSM673330" +FALSE "e" NA 0 "GSM673331" +FALSE "e" NA 0 "GSM673341" +FALSE "e" NA 0 "GSM673342" +FALSE "e" NA 0 "GSM673343" +TRUE "f" NA 0 "GSM674597" +TRUE "l" "GSM674597" 15 "GSM674600" +TRUE "f" NA 0 "GSM674598" +TRUE "l" "GSM674598" 15 "GSM674601" +TRUE "f" NA 0 "GSM674599" +TRUE "l" "GSM674599" 15 "GSM674602" +TRUE "f" NA 0 "GSM772665" +TRUE "l" "GSM772665" 240 "GSM772668" +TRUE "f" NA 0 "GSM772666" +TRUE "l" "GSM772666" 240 "GSM772669" +TRUE "f" NA 0 "GSM772667" +TRUE "l" "GSM772667" 240 "GSM772670" +TRUE "f" NA 0 "GSM772671" +TRUE "l" "GSM772671" 240 "GSM772674" +TRUE "f" NA 0 "GSM772672" +TRUE "l" "GSM772672" 240 "GSM772675" +TRUE "f" NA 0 "GSM772673" +TRUE "l" "GSM772673" 240 "GSM772676" +TRUE "f" NA 0 "GSM772677" +TRUE "l" "GSM772677" 240 "GSM772680" +TRUE "f" NA 0 "GSM772678" +TRUE "l" "GSM772678" 240 "GSM772681" +TRUE "f" NA 0 "GSM772679" +TRUE "l" "GSM772679" 240 "GSM772682" +FALSE "e" NA 0 "GSM826839" +FALSE "e" NA 0 "GSM826841" +TRUE "f" NA 0 "GSM1374149" +TRUE "m" "GSM1374149" 20 "GSM1374150" +TRUE "m" "GSM1374150" 20 "GSM1374151" +TRUE "m" "GSM1374151" 20 "GSM1374152" +TRUE "m" "GSM1374152" 20 "GSM1374153" +TRUE "m" "GSM1374153" 20 "GSM1374154" +TRUE "m" "GSM1374154" 20 "GSM1374155" +TRUE "m" "GSM1374155" 20 "GSM1374156" +TRUE "m" "GSM1374156" 20 "GSM1374157" +TRUE "m" "GSM1374157" 20 "GSM1374158" +TRUE "m" "GSM1374158" 20 "GSM1374159" +TRUE "m" "GSM1374159" 20 "GSM1374160" +TRUE "m" "GSM1374160" 20 "GSM1374161" +TRUE "l" "GSM1374161" 20 "GSM1374162" +TRUE "f" NA 0 "GSM1374165" +TRUE "m" "GSM1374165" 20 "GSM1374166" +TRUE "m" "GSM1374166" 20 "GSM1374167" +TRUE "m" "GSM1374167" 20 "GSM1374168" +TRUE "m" "GSM1374168" 20 "GSM1374169" +TRUE "m" "GSM1374169" 20 "GSM1374170" +TRUE "m" "GSM1374170" 20 "GSM1374171" +TRUE "m" "GSM1374171" 20 "GSM1374172" +TRUE "m" "GSM1374172" 20 "GSM1374173" +TRUE "m" "GSM1374173" 20 "GSM1374174" +TRUE "m" "GSM1374174" 20 "GSM1374175" +TRUE "m" "GSM1374175" 20 "GSM1374176" +TRUE "m" "GSM1374176" 20 "GSM1374177" +TRUE "l" "GSM1374177" 20 "GSM1374178" +TRUE "f" NA 0 "GSM1374182" +TRUE "m" "GSM1374182" 10 "GSM1374183" +TRUE "m" "GSM1374183" 10 "GSM1374184" +TRUE "m" "GSM1374184" 10 "GSM1374185" +TRUE "m" "GSM1374185" 10 "GSM1374186" +TRUE "m" "GSM1374186" 10 "GSM1374187" +TRUE "l" "GSM1374187" 10 "GSM1374188" +TRUE "f" NA 0 "GSM1374198" +TRUE "m" "GSM1374198" 10 "GSM1374199" +TRUE "m" "GSM1374199" 10 "GSM1374200" +TRUE "m" "GSM1374200" 10 "GSM1374201" +TRUE "m" "GSM1374201" 10 "GSM1374202" +TRUE "m" "GSM1374202" 10 "GSM1374203" +TRUE "m" "GSM1374203" 10 "GSM1374204" +TRUE "l" "GSM1374204" 10 "GSM1374205" +TRUE "f" NA 0 "GSM1374213" +TRUE "m" "GSM1374213" 15 "GSM1374214" +TRUE "m" "GSM1374214" 15 "GSM1374215" +TRUE "m" "GSM1374215" 15 "GSM1374216" +TRUE "m" "GSM1374216" 15 "GSM1374217" +TRUE "m" "GSM1374217" 15 "GSM1374218" +TRUE "l" "GSM1374218" 15 "GSM1374219" +TRUE "f" NA 0 "GSM1374231" +TRUE "m" "GSM1374231" 15 "GSM1374232" +TRUE "m" "GSM1374232" 15 "GSM1374233" +TRUE "m" "GSM1374233" 15 "GSM1374234" +TRUE "m" "GSM1374234" 15 "GSM1374235" +TRUE "l" "GSM1374235" 15 "GSM1374236" +TRUE "f" NA 0 "GSM1374249" +TRUE "m" "GSM1374249" 18 "GSM1374250" +TRUE "m" "GSM1374250" 18 "GSM1374251" +TRUE "m" "GSM1374251" 18 "GSM1374252" +TRUE "m" "GSM1374252" 18 "GSM1374253" +TRUE "m" "GSM1374253" 18 "GSM1374254" +TRUE "l" "GSM1374254" 18 "GSM1374255" +TRUE "f" NA 0 "GSM1374269" +TRUE "m" "GSM1374269" 18 "GSM1374270" +TRUE "m" "GSM1374270" 18 "GSM1374271" +TRUE "m" "GSM1374271" 18 "GSM1374272" +TRUE "m" "GSM1374272" 18 "GSM1374273" +TRUE "l" "GSM1374273" 18 "GSM1374274" +TRUE "f" NA 0 "GSM1374290" +TRUE "m" "GSM1374290" 18 "GSM1374291" +TRUE "m" "GSM1374291" 18 "GSM1374292" +TRUE "m" "GSM1374292" 18 "GSM1374293" +TRUE "m" "GSM1374293" 18 "GSM1374294" +TRUE "l" "GSM1374294" 18 "GSM1374295" +FALSE "e" NA 0 "GSM344187" +FALSE "e" NA 0 "GSM344189" +FALSE "e" NA 0 "GSM344191" +FALSE "e" NA 0 "GSM344193" +FALSE "e" NA 0 "GSM344195" +FALSE "e" NA 0 "GSM344197" +FALSE "e" NA 0 "GSM344199" +FALSE "e" NA 0 "GSM344201" +FALSE "e" NA 0 "GSM344203" +FALSE "e" NA 0 "GSM344205" +FALSE "e" NA 0 "GSM344207" +FALSE "e" NA 0 "GSM344209" +FALSE "e" NA 0 "GSM661253" +FALSE "e" NA 0 "GSM661261" +TRUE "f" NA 0 "GSM743947" +TRUE "m" "GSM743947" 4.0002 "GSM743948" +TRUE "m" "GSM743948" 4.0002 "GSM743949" +TRUE "m" "GSM743949" 3.9996 "GSM743950" +TRUE "l" "GSM743950" 104.0001804 "GSM743976" +TRUE "f" NA 0 "GSM743993" +TRUE "m" "GSM743993" 5.00004 "GSM743994" +TRUE "m" "GSM743994" 4.99998 "GSM743995" +TRUE "l" "GSM743995" 4.99998 "GSM743996" +TRUE "f" NA 0 "GSM744027" +TRUE "m" "GSM744027" 4.2 "GSM744028" +TRUE "l" "GSM744028" 3.6 "GSM744029" +TRUE "f" NA 0 "GSM816752" +TRUE "m" "GSM816752" 20 "GSM816753" +TRUE "m" "GSM816753" 20 "GSM816754" +TRUE "l" "GSM816754" 20 "GSM816755" +TRUE "f" NA 0 "GSM816769" +TRUE "l" "GSM816769" 60 "GSM816772" +FALSE "e" NA 0 "GSM1227263" +FALSE "e" NA 0 "GSM1227264" +FALSE "e" NA 0 "GSM1227265" +TRUE "f" NA 0 "GSM1312347" +TRUE "l" "GSM1312347" 60 "GSM1312348" +TRUE "f" NA 0 "GSM1312349" +TRUE "l" "GSM1312349" 60 "GSM1312350" +FALSE "e" NA 0 "GSM1338357" +FALSE "e" NA 0 "GSM1338358" +FALSE "e" NA 0 "GSM1338359" +FALSE "e" NA 0 "GSM1002486" +FALSE "e" NA 0 "GSM1002487" +FALSE "e" NA 0 "GSM1002488" +FALSE "e" NA 0 "GSM1002489" +FALSE "e" NA 0 "GSM1002490" +FALSE "e" NA 0 "GSM1002491" +FALSE "e" NA 0 "GSM1002492" +FALSE "e" NA 0 "GSM1002493" +FALSE "e" NA 0 "GSM1002494" +FALSE "e" NA 0 "GSM1002495" +FALSE "e" NA 0 "GSM1002496" +FALSE "e" NA 0 "GSM1002497" +FALSE "e" NA 0 "GSM1002498" +FALSE "e" NA 0 "GSM1002499" +FALSE "e" NA 0 "GSM1002500" +FALSE "e" NA 0 "GSM1002501" +FALSE "e" NA 0 "GSM1002502" +FALSE "e" NA 0 "GSM1002503" +FALSE "e" NA 0 "GSM1002504" +FALSE "e" NA 0 "GSM1002505" +FALSE "e" NA 0 "GSM1002506" +FALSE "e" NA 0 "GSM1002507" +FALSE "e" NA 0 "GSM1002508" +FALSE "e" NA 0 "GSM1002509" +FALSE "e" NA 0 "GSM1002510" +FALSE "e" NA 0 "GSM1002511" +FALSE "e" NA 0 "GSM1002512" +FALSE "e" NA 0 "GSM1002513" +FALSE "e" NA 0 "GSM1002514" +FALSE "e" NA 0 "GSM1002515" +FALSE "e" NA 0 "GSM1002516" +FALSE "e" NA 0 "GSM1002517" +FALSE "e" NA 0 "GSM1002518" +FALSE "e" NA 0 "GSM1002519" +FALSE "e" NA 0 "GSM1002520" +FALSE "e" NA 0 "GSM1002521" +FALSE "e" NA 0 "GSM1002522" +FALSE "e" NA 0 "GSM1002523" +FALSE "e" NA 0 "GSM1002524" +FALSE "e" NA 0 "GSM1002525" +FALSE "e" NA 0 "GSM1133620" +FALSE "e" NA 0 "GSM1133621" +FALSE "e" NA 0 "GSM1133622" +FALSE "e" NA 0 "GSM1133623" +FALSE "e" NA 0 "GSM1143769" +FALSE "e" NA 0 "GSM1143770" +FALSE "e" NA 0 "GSM1143771" +FALSE "e" NA 0 "GSM1143772" +FALSE "e" NA 0 "GSM1143773" +FALSE "e" NA 0 "GSM1143774" +FALSE "e" NA 0 "GSM1143775" +FALSE "e" NA 0 "GSM1143776" +FALSE "e" NA 0 "GSM1143777" +FALSE "e" NA 0 "GSM1143778" +FALSE "e" NA 0 "GSM1143779" +FALSE "e" NA 0 "GSM1143780" +FALSE "e" NA 0 "GSM1143781" +FALSE "e" NA 0 "GSM1155288" +FALSE "e" NA 0 "GSM1155289" +FALSE "e" NA 0 "GSM1155290" +FALSE "e" NA 0 "GSM1155291" +FALSE "e" NA 0 "GSM1155296" +FALSE "e" NA 0 "GSM1155297" +FALSE "e" NA 0 "GSM1155299" +FALSE "e" NA 0 "GSM1155304" +FALSE "e" NA 0 "GSM1155305" +FALSE "e" NA 0 "GSM1155306" +FALSE "e" NA 0 "GSM1155307" +FALSE "e" NA 0 "GSM1155312" +FALSE "e" NA 0 "GSM1155313" +FALSE "e" NA 0 "GSM1155316" +FALSE "e" NA 0 "GSM1155317" +FALSE "e" NA 0 "GSM1155320" +FALSE "e" NA 0 "GSM1155321" +FALSE "e" NA 0 "GSM116815" +FALSE "e" NA 0 "GSM116816" +FALSE "e" NA 0 "GSM116817" +FALSE "e" NA 0 "GSM116818" +FALSE "e" NA 0 "GSM116819" +FALSE "e" NA 0 "GSM116820" +FALSE "e" NA 0 "GSM1215190" +FALSE "e" NA 0 "GSM1215191" +FALSE "e" NA 0 "GSM1215192" +FALSE "e" NA 0 "GSM1215237" +FALSE "e" NA 0 "GSM1215238" +FALSE "e" NA 0 "GSM1215239" +FALSE "e" NA 0 "GSM1215240" +FALSE "e" NA 0 "GSM1215241" +FALSE "e" NA 0 "GSM1215242" +FALSE "e" NA 0 "GSM1219339" +FALSE "e" NA 0 "GSM1219340" +FALSE "e" NA 0 "GSM1219341" +FALSE "e" NA 0 "GSM1219342" +FALSE "e" NA 0 "GSM1219343" +FALSE "e" NA 0 "GSM1219344" +FALSE "e" NA 0 "GSM1219345" +FALSE "e" NA 0 "GSM1219346" +FALSE "e" NA 0 "GSM1219347" +FALSE "e" NA 0 "GSM1219348" +FALSE "e" NA 0 "GSM1219349" +FALSE "e" NA 0 "GSM1232978" +FALSE "e" NA 0 "GSM1232979" +FALSE "e" NA 0 "GSM1232981" +FALSE "e" NA 0 "GSM1232982" +FALSE "e" NA 0 "GSM1232983" +FALSE "e" NA 0 "GSM1232984" +FALSE "e" NA 0 "GSM1232985" +FALSE "e" NA 0 "GSM1282746" +FALSE "e" NA 0 "GSM1282747" +FALSE "e" NA 0 "GSM1282748" +FALSE "e" NA 0 "GSM1282749" +FALSE "e" NA 0 "GSM1282750" +FALSE "e" NA 0 "GSM1282751" +FALSE "e" NA 0 "GSM1313455" +FALSE "e" NA 0 "GSM1313456" +FALSE "e" NA 0 "GSM1313457" +FALSE "e" NA 0 "GSM1313458" +FALSE "e" NA 0 "GSM1313459" +FALSE "e" NA 0 "GSM1313460" +FALSE "e" NA 0 "GSM1323018" +FALSE "e" NA 0 "GSM1323019" +FALSE "e" NA 0 "GSM1323020" +FALSE "e" NA 0 "GSM1323021" +FALSE "e" NA 0 "GSM1323022" +FALSE "e" NA 0 "GSM1323023" +FALSE "e" NA 0 "GSM1323024" +FALSE "e" NA 0 "GSM1323026" +FALSE "e" NA 0 "GSM1323027" +FALSE "e" NA 0 "GSM1323028" +FALSE "e" NA 0 "GSM1323029" +FALSE "e" NA 0 "GSM1323033" +FALSE "e" NA 0 "GSM1323034" +FALSE "e" NA 0 "GSM1323035" +FALSE "e" NA 0 "GSM1323036" +FALSE "e" NA 0 "GSM1323037" +FALSE "e" NA 0 "GSM1323038" +FALSE "e" NA 0 "GSM1323039" +FALSE "e" NA 0 "GSM1323040" +FALSE "e" NA 0 "GSM1323041" +FALSE "e" NA 0 "GSM1329157" +FALSE "e" NA 0 "GSM1329159" +FALSE "e" NA 0 "GSM1367031" +FALSE "e" NA 0 "GSM1367032" +FALSE "e" NA 0 "GSM1367033" +FALSE "e" NA 0 "GSM1367034" +FALSE "e" NA 0 "GSM1367035" +FALSE "e" NA 0 "GSM1367036" +FALSE "e" NA 0 "GSM1367037" +FALSE "e" NA 0 "GSM1367038" +FALSE "e" NA 0 "GSM1367039" +FALSE "e" NA 0 "GSM1367040" +FALSE "e" NA 0 "GSM1367041" +FALSE "e" NA 0 "GSM1367042" +FALSE "e" NA 0 "GSM1367043" +FALSE "e" NA 0 "GSM1367044" +FALSE "e" NA 0 "GSM1367045" +FALSE "e" NA 0 "GSM1440289" +FALSE "e" NA 0 "GSM1440290" +FALSE "e" NA 0 "GSM1440291" +FALSE "e" NA 0 "GSM1500723" +FALSE "e" NA 0 "GSM1500724" +FALSE "e" NA 0 "GSM1500734" +FALSE "e" NA 0 "GSM1500735" +FALSE "e" NA 0 "GSM206775" +FALSE "e" NA 0 "GSM206776" +FALSE "e" NA 0 "GSM206778" +FALSE "e" NA 0 "GSM206784" +FALSE "e" NA 0 "GSM206787" +FALSE "e" NA 0 "GSM206788" +FALSE "e" NA 0 "GSM206790" +FALSE "e" NA 0 "GSM210016" +FALSE "e" NA 0 "GSM210017" +FALSE "e" NA 0 "GSM210018" +FALSE "e" NA 0 "GSM210019" +FALSE "e" NA 0 "GSM210020" +FALSE "e" NA 0 "GSM210021" +FALSE "e" NA 0 "GSM210022" +FALSE "e" NA 0 "GSM210023" +FALSE "e" NA 0 "GSM233176" +FALSE "e" NA 0 "GSM233177" +FALSE "e" NA 0 "GSM233178" +FALSE "e" NA 0 "GSM233179" +FALSE "e" NA 0 "GSM233180" +FALSE "e" NA 0 "GSM233182" +FALSE "e" NA 0 "GSM233184" +FALSE "e" NA 0 "GSM233191" +FALSE "e" NA 0 "GSM233193" +FALSE "e" NA 0 "GSM233194" +FALSE "e" NA 0 "GSM233195" +FALSE "e" NA 0 "GSM233196" +FALSE "e" NA 0 "GSM252363" +FALSE "e" NA 0 "GSM252364" +FALSE "e" NA 0 "GSM252365" +FALSE "e" NA 0 "GSM252366" +FALSE "e" NA 0 "GSM252367" +FALSE "e" NA 0 "GSM252368" +FALSE "e" NA 0 "GSM252370" +FALSE "e" NA 0 "GSM252373" +FALSE "e" NA 0 "GSM252374" +FALSE "e" NA 0 "GSM252375" +FALSE "e" NA 0 "GSM284868" +FALSE "e" NA 0 "GSM284869" +FALSE "e" NA 0 "GSM284870" +FALSE "e" NA 0 "GSM284871" +FALSE "e" NA 0 "GSM284872" +FALSE "e" NA 0 "GSM287991" +FALSE "e" NA 0 "GSM287992" +FALSE "e" NA 0 "GSM290901" +FALSE "e" NA 0 "GSM290902" +FALSE "e" NA 0 "GSM290903" +FALSE "e" NA 0 "GSM291435" +FALSE "e" NA 0 "GSM306565" +FALSE "e" NA 0 "GSM306567" +FALSE "e" NA 0 "GSM306569" +FALSE "e" NA 0 "GSM306573" +FALSE "e" NA 0 "GSM306577" +FALSE "e" NA 0 "GSM306581" +FALSE "e" NA 0 "GSM306588" +FALSE "e" NA 0 "GSM306591" +FALSE "e" NA 0 "GSM306605" +FALSE "e" NA 0 "GSM307421" +FALSE "e" NA 0 "GSM307422" +FALSE "e" NA 0 "GSM307427" +FALSE "e" NA 0 "GSM307468" +FALSE "e" NA 0 "GSM346067" +FALSE "e" NA 0 "GSM346068" +FALSE "e" NA 0 "GSM346069" +FALSE "e" NA 0 "GSM346070" +FALSE "e" NA 0 "GSM349717" +FALSE "e" NA 0 "GSM349719" +FALSE "e" NA 0 "GSM349841" +FALSE "e" NA 0 "GSM349842" +FALSE "e" NA 0 "GSM349843" +FALSE "e" NA 0 "GSM349844" +FALSE "e" NA 0 "GSM349845" +FALSE "e" NA 0 "GSM349846" +FALSE "e" NA 0 "GSM349847" +FALSE "e" NA 0 "GSM373307" +FALSE "e" NA 0 "GSM373309" +FALSE "e" NA 0 "GSM373311" +FALSE "e" NA 0 "GSM379675" +FALSE "e" NA 0 "GSM379676" +FALSE "e" NA 0 "GSM379677" +FALSE "e" NA 0 "GSM379678" +FALSE "e" NA 0 "GSM379679" +FALSE "e" NA 0 "GSM379680" +FALSE "e" NA 0 "GSM379681" +FALSE "e" NA 0 "GSM379682" +FALSE "e" NA 0 "GSM379683" +FALSE "e" NA 0 "GSM387989" +FALSE "e" NA 0 "GSM410201" +FALSE "e" NA 0 "GSM410202" +FALSE "e" NA 0 "GSM410203" +FALSE "e" NA 0 "GSM410204" +FALSE "e" NA 0 "GSM442201" +FALSE "e" NA 0 "GSM442203" +FALSE "e" NA 0 "GSM442204" +FALSE "e" NA 0 "GSM442207" +FALSE "e" NA 0 "GSM442208" +FALSE "e" NA 0 "GSM442209" +FALSE "e" NA 0 "GSM442210" +FALSE "e" NA 0 "GSM442211" +FALSE "e" NA 0 "GSM442212" +FALSE "e" NA 0 "GSM442213" +FALSE "e" NA 0 "GSM442214" +FALSE "e" NA 0 "GSM442215" +FALSE "e" NA 0 "GSM442216" +FALSE "e" NA 0 "GSM446618" +FALSE "e" NA 0 "GSM446623" +FALSE "e" NA 0 "GSM446624" +FALSE "e" NA 0 "GSM446625" +FALSE "e" NA 0 "GSM446626" +FALSE "e" NA 0 "GSM446627" +FALSE "e" NA 0 "GSM446628" +FALSE "e" NA 0 "GSM446633" +FALSE "e" NA 0 "GSM446634" +FALSE "e" NA 0 "GSM446635" +FALSE "e" NA 0 "GSM446636" +FALSE "e" NA 0 "GSM453881" +FALSE "e" NA 0 "GSM453882" +FALSE "e" NA 0 "GSM453883" +FALSE "e" NA 0 "GSM453884" +FALSE "e" NA 0 "GSM453885" +FALSE "e" NA 0 "GSM453886" +FALSE "e" NA 0 "GSM457182" +FALSE "e" NA 0 "GSM457183" +FALSE "e" NA 0 "GSM457185" +FALSE "e" NA 0 "GSM457186" +FALSE "e" NA 0 "GSM457187" +FALSE "e" NA 0 "GSM457773" +FALSE "e" NA 0 "GSM457775" +FALSE "e" NA 0 "GSM459755" +FALSE "e" NA 0 "GSM459758" +FALSE "e" NA 0 "GSM459759" +FALSE "e" NA 0 "GSM459760" +FALSE "e" NA 0 "GSM460266" +FALSE "e" NA 0 "GSM460267" +FALSE "e" NA 0 "GSM460268" +FALSE "e" NA 0 "GSM460269" +FALSE "e" NA 0 "GSM460270" +FALSE "e" NA 0 "GSM460271" +FALSE "e" NA 0 "GSM460272" +FALSE "e" NA 0 "GSM460273" +FALSE "e" NA 0 "GSM460274" +FALSE "e" NA 0 "GSM460275" +FALSE "e" NA 0 "GSM460276" +FALSE "e" NA 0 "GSM460277" +FALSE "e" NA 0 "GSM460278" +FALSE "e" NA 0 "GSM460279" +FALSE "e" NA 0 "GSM469895" +FALSE "e" NA 0 "GSM469896" +FALSE "e" NA 0 "GSM469897" +FALSE "e" NA 0 "GSM469898" +FALSE "e" NA 0 "GSM469899" +FALSE "e" NA 0 "GSM469900" +FALSE "e" NA 0 "GSM470049" +FALSE "e" NA 0 "GSM470050" +FALSE "e" NA 0 "GSM470051" +FALSE "e" NA 0 "GSM470052" +FALSE "e" NA 0 "GSM470053" +FALSE "e" NA 0 "GSM470054" +FALSE "e" NA 0 "GSM470055" +FALSE "e" NA 0 "GSM470056" +FALSE "e" NA 0 "GSM486534" +FALSE "e" NA 0 "GSM486535" +FALSE "e" NA 0 "GSM486537" +FALSE "e" NA 0 "GSM486538" +FALSE "e" NA 0 "GSM486539" +FALSE "e" NA 0 "GSM486540" +FALSE "e" NA 0 "GSM486541" +FALSE "e" NA 0 "GSM486542" +FALSE "e" NA 0 "GSM486543" +FALSE "e" NA 0 "GSM486545" +FALSE "e" NA 0 "GSM486546" +FALSE "e" NA 0 "GSM486547" +FALSE "e" NA 0 "GSM486548" +FALSE "e" NA 0 "GSM486549" +FALSE "e" NA 0 "GSM487699" +FALSE "e" NA 0 "GSM487700" +FALSE "e" NA 0 "GSM487701" +FALSE "e" NA 0 "GSM487702" +FALSE "e" NA 0 "GSM487703" +FALSE "e" NA 0 "GSM487704" +FALSE "e" NA 0 "GSM502522" +FALSE "e" NA 0 "GSM502523" +FALSE "e" NA 0 "GSM502524" +FALSE "e" NA 0 "GSM502525" +FALSE "e" NA 0 "GSM509831" +FALSE "e" NA 0 "GSM509832" +FALSE "e" NA 0 "GSM509833" +FALSE "e" NA 0 "GSM509834" +FALSE "e" NA 0 "GSM509835" +FALSE "e" NA 0 "GSM509836" +FALSE "e" NA 0 "GSM516819" +FALSE "e" NA 0 "GSM516821" +FALSE "e" NA 0 "GSM516823" +FALSE "e" NA 0 "GSM536874" +FALSE "e" NA 0 "GSM536875" +FALSE "e" NA 0 "GSM536878" +FALSE "e" NA 0 "GSM536879" +FALSE "e" NA 0 "GSM538768" +FALSE "e" NA 0 "GSM538769" +FALSE "e" NA 0 "GSM538770" +FALSE "e" NA 0 "GSM538771" +FALSE "e" NA 0 "GSM538772" +FALSE "e" NA 0 "GSM538773" +FALSE "e" NA 0 "GSM538774" +FALSE "e" NA 0 "GSM538775" +FALSE "e" NA 0 "GSM538776" +FALSE "e" NA 0 "GSM538777" +FALSE "e" NA 0 "GSM538778" +FALSE "e" NA 0 "GSM538779" +FALSE "e" NA 0 "GSM538780" +FALSE "e" NA 0 "GSM538781" +FALSE "e" NA 0 "GSM538782" +FALSE "e" NA 0 "GSM538783" +FALSE "e" NA 0 "GSM538784" +FALSE "e" NA 0 "GSM538785" +FALSE "e" NA 0 "GSM538786" +FALSE "e" NA 0 "GSM538787" +FALSE "e" NA 0 "GSM538788" +FALSE "e" NA 0 "GSM538789" +FALSE "e" NA 0 "GSM538790" +FALSE "e" NA 0 "GSM538791" +FALSE "e" NA 0 "GSM543929" +FALSE "e" NA 0 "GSM543930" +FALSE "e" NA 0 "GSM543931" +FALSE "e" NA 0 "GSM543932" +FALSE "e" NA 0 "GSM543933" +FALSE "e" NA 0 "GSM543934" +FALSE "e" NA 0 "GSM543935" +FALSE "e" NA 0 "GSM543936" +FALSE "e" NA 0 "GSM543937" +FALSE "e" NA 0 "GSM554221" +FALSE "e" NA 0 "GSM554222" +FALSE "e" NA 0 "GSM554223" +FALSE "e" NA 0 "GSM554224" +FALSE "e" NA 0 "GSM554225" +FALSE "e" NA 0 "GSM554226" +FALSE "e" NA 0 "GSM554231" +FALSE "e" NA 0 "GSM554232" +FALSE "e" NA 0 "GSM554233" +FALSE "e" NA 0 "GSM554235" +FALSE "e" NA 0 "GSM554236" +FALSE "e" NA 0 "GSM554237" +FALSE "e" NA 0 "GSM554238" +FALSE "e" NA 0 "GSM561856" +FALSE "e" NA 0 "GSM561857" +FALSE "e" NA 0 "GSM561858" +FALSE "e" NA 0 "GSM561859" +FALSE "e" NA 0 "GSM561860" +FALSE "e" NA 0 "GSM561861" +FALSE "e" NA 0 "GSM561862" +FALSE "e" NA 0 "GSM563813" +FALSE "e" NA 0 "GSM563814" +FALSE "e" NA 0 "GSM563815" +FALSE "e" NA 0 "GSM563816" +FALSE "e" NA 0 "GSM563817" +FALSE "e" NA 0 "GSM563818" +FALSE "e" NA 0 "GSM563819" +FALSE "e" NA 0 "GSM563820" +FALSE "e" NA 0 "GSM563821" +FALSE "e" NA 0 "GSM563822" +FALSE "e" NA 0 "GSM563823" +FALSE "e" NA 0 "GSM563824" +FALSE "e" NA 0 "GSM585193" +FALSE "e" NA 0 "GSM585194" +FALSE "e" NA 0 "GSM585195" +FALSE "e" NA 0 "GSM585196" +FALSE "e" NA 0 "GSM585198" +FALSE "e" NA 0 "GSM591840" +FALSE "e" NA 0 "GSM591841" +FALSE "e" NA 0 "GSM591842" +FALSE "e" NA 0 "GSM591844" +FALSE "e" NA 0 "GSM591846" +FALSE "e" NA 0 "GSM591847" +FALSE "e" NA 0 "GSM591848" +FALSE "e" NA 0 "GSM591849" +FALSE "e" NA 0 "GSM591850" +FALSE "e" NA 0 "GSM591851" +FALSE "e" NA 0 "GSM591852" +FALSE "e" NA 0 "GSM591853" +FALSE "e" NA 0 "GSM591854" +FALSE "e" NA 0 "GSM591855" +FALSE "e" NA 0 "GSM591856" +FALSE "e" NA 0 "GSM596039" +FALSE "e" NA 0 "GSM596040" +FALSE "e" NA 0 "GSM596041" +FALSE "e" NA 0 "GSM596045" +FALSE "e" NA 0 "GSM596046" +FALSE "e" NA 0 "GSM596047" +FALSE "e" NA 0 "GSM601079" +FALSE "e" NA 0 "GSM601080" +FALSE "e" NA 0 "GSM601081" +FALSE "e" NA 0 "GSM601082" +FALSE "e" NA 0 "GSM601083" +FALSE "e" NA 0 "GSM60823" +FALSE "e" NA 0 "GSM60824" +FALSE "e" NA 0 "GSM610680" +FALSE "e" NA 0 "GSM610681" +FALSE "e" NA 0 "GSM610682" +FALSE "e" NA 0 "GSM610683" +FALSE "e" NA 0 "GSM610684" +FALSE "e" NA 0 "GSM610685" +FALSE "e" NA 0 "GSM610686" +FALSE "e" NA 0 "GSM610687" +FALSE "e" NA 0 "GSM610688" +FALSE "e" NA 0 "GSM610689" +FALSE "e" NA 0 "GSM645858" +FALSE "e" NA 0 "GSM645859" +FALSE "e" NA 0 "GSM645860" +FALSE "e" NA 0 "GSM645861" +FALSE "e" NA 0 "GSM645862" +FALSE "e" NA 0 "GSM645863" +FALSE "e" NA 0 "GSM662913" +FALSE "e" NA 0 "GSM662914" +FALSE "e" NA 0 "GSM662915" +FALSE "e" NA 0 "GSM662916" +FALSE "e" NA 0 "GSM662917" +FALSE "e" NA 0 "GSM662918" +FALSE "e" NA 0 "GSM662919" +FALSE "e" NA 0 "GSM662920" +FALSE "e" NA 0 "GSM662921" +FALSE "e" NA 0 "GSM662922" +FALSE "e" NA 0 "GSM667883" +FALSE "e" NA 0 "GSM710315" +FALSE "e" NA 0 "GSM710316" +FALSE "e" NA 0 "GSM710317" +FALSE "e" NA 0 "GSM710318" +FALSE "e" NA 0 "GSM710319" +FALSE "e" NA 0 "GSM710320" +FALSE "e" NA 0 "GSM710321" +FALSE "e" NA 0 "GSM710322" +FALSE "e" NA 0 "GSM710323" +FALSE "e" NA 0 "GSM710324" +FALSE "e" NA 0 "GSM710325" +FALSE "e" NA 0 "GSM710326" +FALSE "e" NA 0 "GSM720969" +FALSE "e" NA 0 "GSM720970" +FALSE "e" NA 0 "GSM720971" +FALSE "e" NA 0 "GSM725996" +FALSE "e" NA 0 "GSM725997" +FALSE "e" NA 0 "GSM725998" +FALSE "e" NA 0 "GSM725999" +FALSE "e" NA 0 "GSM726000" +FALSE "e" NA 0 "GSM726001" +FALSE "e" NA 0 "GSM726002" +FALSE "e" NA 0 "GSM726003" +FALSE "e" NA 0 "GSM726004" +FALSE "e" NA 0 "GSM726005" +FALSE "e" NA 0 "GSM726006" +FALSE "e" NA 0 "GSM727532" +FALSE "e" NA 0 "GSM727533" +FALSE "e" NA 0 "GSM727534" +FALSE "e" NA 0 "GSM776981" +FALSE "e" NA 0 "GSM776982" +FALSE "e" NA 0 "GSM776983" +FALSE "e" NA 0 "GSM776984" +FALSE "e" NA 0 "GSM776985" +FALSE "e" NA 0 "GSM776986" +FALSE "e" NA 0 "GSM776987" +FALSE "e" NA 0 "GSM776988" +FALSE "e" NA 0 "GSM776989" +FALSE "e" NA 0 "GSM776990" +FALSE "e" NA 0 "GSM776991" +FALSE "e" NA 0 "GSM776992" +FALSE "e" NA 0 "GSM776993" +FALSE "e" NA 0 "GSM776994" +FALSE "e" NA 0 "GSM776995" +FALSE "e" NA 0 "GSM777664" +FALSE "e" NA 0 "GSM777665" +FALSE "e" NA 0 "GSM777668" +FALSE "e" NA 0 "GSM777669" +FALSE "e" NA 0 "GSM788339" +FALSE "e" NA 0 "GSM788340" +FALSE "e" NA 0 "GSM788341" +FALSE "e" NA 0 "GSM788342" +FALSE "e" NA 0 "GSM788343" +FALSE "e" NA 0 "GSM788344" +FALSE "e" NA 0 "GSM788345" +FALSE "e" NA 0 "GSM788346" +FALSE "e" NA 0 "GSM788347" +FALSE "e" NA 0 "GSM788357" +FALSE "e" NA 0 "GSM788358" +FALSE "e" NA 0 "GSM788359" +FALSE "e" NA 0 "GSM823349" +FALSE "e" NA 0 "GSM823350" +FALSE "e" NA 0 "GSM823353" +FALSE "e" NA 0 "GSM823354" +FALSE "e" NA 0 "GSM823355" +FALSE "e" NA 0 "GSM823359" +FALSE "e" NA 0 "GSM823360" +FALSE "e" NA 0 "GSM823882" +FALSE "e" NA 0 "GSM823883" +FALSE "e" NA 0 "GSM871547" +FALSE "e" NA 0 "GSM871548" +FALSE "e" NA 0 "GSM871549" +FALSE "e" NA 0 "GSM871550" +FALSE "e" NA 0 "GSM871551" +FALSE "e" NA 0 "GSM871552" +FALSE "e" NA 0 "GSM886632" +FALSE "e" NA 0 "GSM886633" +FALSE "e" NA 0 "GSM886634" +FALSE "e" NA 0 "GSM897346" +FALSE "e" NA 0 "GSM897347" +FALSE "e" NA 0 "GSM897348" +FALSE "e" NA 0 "GSM897350" +FALSE "e" NA 0 "GSM897351" +FALSE "e" NA 0 "GSM897352" +FALSE "e" NA 0 "GSM897353" +FALSE "e" NA 0 "GSM897354" +FALSE "e" NA 0 "GSM897355" +FALSE "e" NA 0 "GSM907119" +FALSE "e" NA 0 "GSM907120" +FALSE "e" NA 0 "GSM950695" +FALSE "e" NA 0 "GSM950696" +FALSE "e" NA 0 "GSM950698" +FALSE "e" NA 0 "GSM950699" +FALSE "e" NA 0 "GSM950700" +FALSE "e" NA 0 "GSM950704" +FALSE "e" NA 0 "GSM950705" +FALSE "e" NA 0 "GSM950706" +FALSE "e" NA 0 "GSM954981" +FALSE "e" NA 0 "GSM954982" +FALSE "e" NA 0 "GSM982149" +FALSE "e" NA 0 "GSM982150" +FALSE "e" NA 0 "GSM982151" +FALSE "e" NA 0 "GSM982152" +FALSE "e" NA 0 "GSM982153" +FALSE "e" NA 0 "GSM982154" +FALSE "e" NA 0 "GSM98259" +FALSE "e" NA 0 "GSM98261" +FALSE "e" NA 0 "GSM98263" +FALSE "e" NA 0 "GSM98265" +FALSE "e" NA 0 "GSM98267" +FALSE "e" NA 0 "GSM98275" +FALSE "e" NA 0 "GSM98276" +FALSE "e" NA 0 "GSM98277" +FALSE "e" NA 0 "GSM98278" +FALSE "e" NA 0 "GSM98279" +FALSE "e" NA 0 "GSM98280" +FALSE "e" NA 0 "GSM98281" +FALSE "e" NA 0 "GSM98282" +FALSE "e" NA 0 "GSM98283" +FALSE "e" NA 0 "GSM98284" +FALSE "e" NA 0 "GSM98285" +FALSE "e" NA 0 "GSM985323" +FALSE "e" NA 0 "GSM985324" +FALSE "e" NA 0 "GSM985325" +FALSE "e" NA 0 "GSM985326" +FALSE "e" NA 0 "GSM985327" +FALSE "e" NA 0 "GSM985328" +FALSE "e" NA 0 "GSM985329" +FALSE "e" NA 0 "GSM985330" +FALSE "e" NA 0 "GSM985331" +FALSE "e" NA 0 "GSM985332" +FALSE "e" NA 0 "GSM985333" +FALSE "e" NA 0 "GSM985334" +FALSE "e" NA 0 "GSM992833" +FALSE "e" NA 0 "GSM992834" +FALSE "e" NA 0 "GSM992835" +FALSE "e" NA 0 "GSM992836" +FALSE "e" NA 0 "GSM992837" +FALSE "e" NA 0 "GSM992838" +FALSE "e" NA 0 "GSM1331736" +FALSE "e" NA 0 "GSM1331737" +FALSE "e" NA 0 "GSM1331738" +FALSE "e" NA 0 "GSM1331739" +FALSE "e" NA 0 "GSM1331741" +FALSE "e" NA 0 "GSM1331742" +FALSE "e" NA 0 "GSM1331743" +FALSE "e" NA 0 "GSM1331744" +FALSE "e" NA 0 "GSM1331745" +FALSE "e" NA 0 "GSM1331746" +FALSE "e" NA 0 "GSM1331747" +FALSE "e" NA 0 "GSM1331748" +FALSE "e" NA 0 "GSM1331749" +FALSE "e" NA 0 "GSM1331750" +FALSE "e" NA 0 "GSM307249" +FALSE "e" NA 0 "GSM307259" +FALSE "e" NA 0 "GSM399864" +FALSE "e" NA 0 "GSM554208" +FALSE "e" NA 0 "GSM554209" +FALSE "e" NA 0 "GSM914169" +FALSE "e" NA 0 "GSM914170" +FALSE "e" NA 0 "GSM914171" +FALSE "e" NA 0 "GSM914172" +FALSE "e" NA 0 "GSM914173" +FALSE "e" NA 0 "GSM914174" +FALSE "e" NA 0 "GSM914175" +FALSE "e" NA 0 "GSM914176" +FALSE "e" NA 0 "GSM914177" diff --git a/data/yeast/clusters/meta_clust4.tsv b/data/yeast/clusters/meta_clust4.tsv new file mode 100644 index 0000000..1d123d8 --- /dev/null +++ b/data/yeast/clusters/meta_clust4.tsv @@ -0,0 +1,346 @@ +"isTs" "is1stLast" "prevCol" "del.t" "condName" +TRUE "f" NA 0 "GSM239504" +TRUE "l" "GSM239504" 3120 "GSM239501" +TRUE "f" NA 0 "GSM239505" +TRUE "m" "GSM239505" 1320 "GSM239499" +TRUE "l" "GSM239499" 1800 "GSM239502" +TRUE "f" NA 0 "GSM239506" +TRUE "m" "GSM239506" 1320 "GSM239500" +TRUE "l" "GSM239500" 1800 "GSM239503" +FALSE "e" NA 0 "GSM239507" +TRUE "f" NA 0 "GSM257776" +TRUE "m" "GSM257776" 1320 "GSM257779" +TRUE "m" "GSM257779" 1800 "GSM257781" +TRUE "m" "GSM257781" 1200 "GSM257784" +TRUE "l" "GSM257784" 1320 "GSM257787" +TRUE "f" NA 0 "GSM257777" +TRUE "m" "GSM257777" 1320 "GSM257780" +TRUE "m" "GSM257780" 1800 "GSM257782" +TRUE "m" "GSM257782" 1200 "GSM257785" +TRUE "l" "GSM257785" 1320 "GSM257788" +TRUE "f" NA 0 "GSM257778" +TRUE "m" "GSM257778" 3120 "GSM257783" +TRUE "m" "GSM257783" 1200 "GSM257786" +TRUE "l" "GSM257786" 1320 "GSM257789" +TRUE "f" NA 0 "GSM307247" +TRUE "l" "GSM307247" 10 "GSM307248" +TRUE "f" NA 0 "GSM356519" +TRUE "m" "GSM356519" 720 "GSM356520" +TRUE "m" "GSM356520" 720 "GSM356521" +TRUE "m" "GSM356521" 720 "GSM356522" +TRUE "m" "GSM356522" 720 "GSM356523" +TRUE "m" "GSM356523" 720 "GSM356524" +TRUE "m" "GSM356524" 720 "GSM356525" +TRUE "m" "GSM356525" 720 "GSM356526" +TRUE "l" "GSM356526" 720 "GSM356527" +TRUE "f" NA 0 "GSM356529" +TRUE "m" "GSM356529" 720 "GSM356530" +TRUE "m" "GSM356530" 720 "GSM356531" +TRUE "m" "GSM356531" 720 "GSM356532" +TRUE "m" "GSM356532" 720 "GSM356533" +TRUE "m" "GSM356533" 720 "GSM356534" +TRUE "m" "GSM356534" 720 "GSM356535" +TRUE "l" "GSM356535" 720 "GSM356536" +TRUE "f" NA 0 "GSM385485" +TRUE "l" "GSM385485" 960 "GSM385486" +FALSE "e" NA 0 "GSM385494" +FALSE "e" NA 0 "GSM434018" +FALSE "e" NA 0 "GSM614242" +FALSE "e" NA 0 "GSM630783" +FALSE "e" NA 0 "GSM673321" +TRUE "f" NA 0 "GSM673332" +TRUE "m" "GSM673332" 20 "GSM673335" +TRUE "l" "GSM673335" 20 "GSM673338" +TRUE "f" NA 0 "GSM673333" +TRUE "m" "GSM673333" 20 "GSM673336" +TRUE "l" "GSM673336" 20 "GSM673339" +TRUE "f" NA 0 "GSM673334" +TRUE "m" "GSM673334" 20 "GSM673337" +TRUE "l" "GSM673337" 20 "GSM673340" +TRUE "f" NA 0 "GSM673344" +TRUE "m" "GSM673344" 20 "GSM673347" +TRUE "l" "GSM673347" 20 "GSM673350" +TRUE "f" NA 0 "GSM673345" +TRUE "m" "GSM673345" 20 "GSM673348" +TRUE "l" "GSM673348" 20 "GSM673351" +TRUE "f" NA 0 "GSM673346" +TRUE "m" "GSM673346" 20 "GSM673349" +TRUE "l" "GSM673349" 20 "GSM673352" +FALSE "e" NA 0 "GSM826842" +FALSE "e" NA 0 "GSM826843" +FALSE "e" NA 0 "GSM826844" +TRUE "f" NA 0 "GSM842094" +TRUE "l" "GSM842094" 1440 "GSM842096" +TRUE "f" NA 0 "GSM842095" +TRUE "l" "GSM842095" 1440 "GSM842097" +TRUE "f" NA 0 "GSM842101" +TRUE "l" "GSM842101" 1440 "GSM842103" +TRUE "f" NA 0 "GSM842100" +TRUE "m" "GSM842100" 1440 "GSM842102" +TRUE "l" "GSM842102" 1440 "GSM842104" +FALSE "e" NA 0 "GSM1374197" +FALSE "e" NA 0 "GSM564451" +FALSE "e" NA 0 "GSM564465" +FALSE "e" NA 0 "GSM564472" +FALSE "e" NA 0 "GSM661275" +FALSE "e" NA 0 "GSM661282" +FALSE "e" NA 0 "GSM816749" +FALSE "e" NA 0 "GSM816764" +FALSE "e" NA 0 "GSM816782" +TRUE "f" NA 0 "GSM1227260" +TRUE "m" "GSM1227260" 2880 "GSM1227272" +TRUE "m" "GSM1227272" 2880 "GSM1227278" +TRUE "l" "GSM1227278" 1440 "GSM1227281" +TRUE "f" NA 0 "GSM1227261" +TRUE "m" "GSM1227261" 2880 "GSM1227273" +TRUE "m" "GSM1227273" 2880 "GSM1227279" +TRUE "l" "GSM1227279" 1440 "GSM1227282" +TRUE "f" NA 0 "GSM1227262" +TRUE "m" "GSM1227262" 2880 "GSM1227274" +TRUE "m" "GSM1227274" 2880 "GSM1227280" +TRUE "l" "GSM1227280" 1440 "GSM1227283" +FALSE "e" NA 0 "GSM1338363" +FALSE "e" NA 0 "GSM1338364" +FALSE "e" NA 0 "GSM1338365" +FALSE "e" NA 0 "GSM1155276" +FALSE "e" NA 0 "GSM1155277" +FALSE "e" NA 0 "GSM1155278" +FALSE "e" NA 0 "GSM1155279" +FALSE "e" NA 0 "GSM1155280" +FALSE "e" NA 0 "GSM1155281" +FALSE "e" NA 0 "GSM1155282" +FALSE "e" NA 0 "GSM1155283" +FALSE "e" NA 0 "GSM1155284" +FALSE "e" NA 0 "GSM1155285" +FALSE "e" NA 0 "GSM1155286" +FALSE "e" NA 0 "GSM1155287" +FALSE "e" NA 0 "GSM1155301" +FALSE "e" NA 0 "GSM1155303" +FALSE "e" NA 0 "GSM1155319" +FALSE "e" NA 0 "GSM1215196" +FALSE "e" NA 0 "GSM1215197" +FALSE "e" NA 0 "GSM1215198" +FALSE "e" NA 0 "GSM1215199" +FALSE "e" NA 0 "GSM1215200" +FALSE "e" NA 0 "GSM1215201" +FALSE "e" NA 0 "GSM1329158" +FALSE "e" NA 0 "GSM1329160" +FALSE "e" NA 0 "GSM1346243" +FALSE "e" NA 0 "GSM1346244" +FALSE "e" NA 0 "GSM1346245" +FALSE "e" NA 0 "GSM1346246" +FALSE "e" NA 0 "GSM1346247" +FALSE "e" NA 0 "GSM1346248" +FALSE "e" NA 0 "GSM1502685" +FALSE "e" NA 0 "GSM1502686" +FALSE "e" NA 0 "GSM1502687" +FALSE "e" NA 0 "GSM1502688" +FALSE "e" NA 0 "GSM1502689" +FALSE "e" NA 0 "GSM1502690" +FALSE "e" NA 0 "GSM1502691" +FALSE "e" NA 0 "GSM1502692" +FALSE "e" NA 0 "GSM1502693" +FALSE "e" NA 0 "GSM1502694" +FALSE "e" NA 0 "GSM1507488" +FALSE "e" NA 0 "GSM1507491" +FALSE "e" NA 0 "GSM1507492" +FALSE "e" NA 0 "GSM1507494" +FALSE "e" NA 0 "GSM248449" +FALSE "e" NA 0 "GSM248452" +FALSE "e" NA 0 "GSM290992" +FALSE "e" NA 0 "GSM290993" +FALSE "e" NA 0 "GSM290994" +FALSE "e" NA 0 "GSM290995" +FALSE "e" NA 0 "GSM290996" +FALSE "e" NA 0 "GSM290997" +FALSE "e" NA 0 "GSM290998" +FALSE "e" NA 0 "GSM290999" +FALSE "e" NA 0 "GSM291000" +FALSE "e" NA 0 "GSM291001" +FALSE "e" NA 0 "GSM291002" +FALSE "e" NA 0 "GSM291003" +FALSE "e" NA 0 "GSM291140" +FALSE "e" NA 0 "GSM291141" +FALSE "e" NA 0 "GSM291142" +FALSE "e" NA 0 "GSM291525" +FALSE "e" NA 0 "GSM291538" +FALSE "e" NA 0 "GSM291539" +FALSE "e" NA 0 "GSM291540" +FALSE "e" NA 0 "GSM291554" +FALSE "e" NA 0 "GSM291555" +FALSE "e" NA 0 "GSM292045" +FALSE "e" NA 0 "GSM296856" +FALSE "e" NA 0 "GSM296857" +FALSE "e" NA 0 "GSM296858" +FALSE "e" NA 0 "GSM296859" +FALSE "e" NA 0 "GSM296860" +FALSE "e" NA 0 "GSM296861" +FALSE "e" NA 0 "GSM338560" +FALSE "e" NA 0 "GSM338561" +FALSE "e" NA 0 "GSM338562" +FALSE "e" NA 0 "GSM338563" +FALSE "e" NA 0 "GSM338564" +FALSE "e" NA 0 "GSM338565" +FALSE "e" NA 0 "GSM338566" +FALSE "e" NA 0 "GSM338567" +FALSE "e" NA 0 "GSM338568" +FALSE "e" NA 0 "GSM338569" +FALSE "e" NA 0 "GSM338570" +FALSE "e" NA 0 "GSM338571" +FALSE "e" NA 0 "GSM344245" +FALSE "e" NA 0 "GSM344257" +FALSE "e" NA 0 "GSM344264" +FALSE "e" NA 0 "GSM344269" +FALSE "e" NA 0 "GSM344272" +FALSE "e" NA 0 "GSM344274" +FALSE "e" NA 0 "GSM344281" +FALSE "e" NA 0 "GSM344291" +FALSE "e" NA 0 "GSM344295" +FALSE "e" NA 0 "GSM344297" +FALSE "e" NA 0 "GSM344298" +FALSE "e" NA 0 "GSM344304" +FALSE "e" NA 0 "GSM344308" +FALSE "e" NA 0 "GSM344310" +FALSE "e" NA 0 "GSM344312" +FALSE "e" NA 0 "GSM344313" +FALSE "e" NA 0 "GSM344317" +FALSE "e" NA 0 "GSM432203" +FALSE "e" NA 0 "GSM432204" +FALSE "e" NA 0 "GSM432205" +FALSE "e" NA 0 "GSM432206" +FALSE "e" NA 0 "GSM432207" +FALSE "e" NA 0 "GSM432208" +FALSE "e" NA 0 "GSM434047" +FALSE "e" NA 0 "GSM476081" +FALSE "e" NA 0 "GSM476082" +FALSE "e" NA 0 "GSM476083" +FALSE "e" NA 0 "GSM476084" +FALSE "e" NA 0 "GSM476085" +FALSE "e" NA 0 "GSM476086" +FALSE "e" NA 0 "GSM476087" +FALSE "e" NA 0 "GSM476088" +FALSE "e" NA 0 "GSM476089" +FALSE "e" NA 0 "GSM476090" +FALSE "e" NA 0 "GSM476091" +FALSE "e" NA 0 "GSM476092" +FALSE "e" NA 0 "GSM476093" +FALSE "e" NA 0 "GSM476094" +FALSE "e" NA 0 "GSM476095" +FALSE "e" NA 0 "GSM476096" +FALSE "e" NA 0 "GSM530137" +FALSE "e" NA 0 "GSM530138" +FALSE "e" NA 0 "GSM530141" +FALSE "e" NA 0 "GSM530142" +FALSE "e" NA 0 "GSM530143" +FALSE "e" NA 0 "GSM530144" +FALSE "e" NA 0 "GSM530146" +FALSE "e" NA 0 "GSM530147" +FALSE "e" NA 0 "GSM530148" +FALSE "e" NA 0 "GSM530149" +FALSE "e" NA 0 "GSM530150" +FALSE "e" NA 0 "GSM530151" +FALSE "e" NA 0 "GSM530152" +FALSE "e" NA 0 "GSM530153" +FALSE "e" NA 0 "GSM530154" +FALSE "e" NA 0 "GSM530155" +FALSE "e" NA 0 "GSM530156" +FALSE "e" NA 0 "GSM530157" +FALSE "e" NA 0 "GSM530158" +FALSE "e" NA 0 "GSM530159" +FALSE "e" NA 0 "GSM530160" +FALSE "e" NA 0 "GSM627771" +FALSE "e" NA 0 "GSM627772" +FALSE "e" NA 0 "GSM627773" +FALSE "e" NA 0 "GSM627774" +FALSE "e" NA 0 "GSM627775" +FALSE "e" NA 0 "GSM627776" +FALSE "e" NA 0 "GSM627777" +FALSE "e" NA 0 "GSM627778" +FALSE "e" NA 0 "GSM713178" +FALSE "e" NA 0 "GSM713179" +FALSE "e" NA 0 "GSM713180" +FALSE "e" NA 0 "GSM713181" +FALSE "e" NA 0 "GSM713182" +FALSE "e" NA 0 "GSM713183" +FALSE "e" NA 0 "GSM713185" +FALSE "e" NA 0 "GSM721113" +FALSE "e" NA 0 "GSM721115" +FALSE "e" NA 0 "GSM721128" +FALSE "e" NA 0 "GSM721129" +FALSE "e" NA 0 "GSM721130" +FALSE "e" NA 0 "GSM721131" +FALSE "e" NA 0 "GSM721132" +FALSE "e" NA 0 "GSM777666" +FALSE "e" NA 0 "GSM777667" +FALSE "e" NA 0 "GSM826845" +FALSE "e" NA 0 "GSM826846" +FALSE "e" NA 0 "GSM826847" +FALSE "e" NA 0 "GSM826848" +FALSE "e" NA 0 "GSM826849" +FALSE "e" NA 0 "GSM826850" +FALSE "e" NA 0 "GSM826851" +FALSE "e" NA 0 "GSM826852" +FALSE "e" NA 0 "GSM826853" +FALSE "e" NA 0 "GSM842098" +FALSE "e" NA 0 "GSM842105" +FALSE "e" NA 0 "GSM881835" +FALSE "e" NA 0 "GSM881836" +FALSE "e" NA 0 "GSM881837" +FALSE "e" NA 0 "GSM881838" +FALSE "e" NA 0 "GSM881839" +FALSE "e" NA 0 "GSM881840" +FALSE "e" NA 0 "GSM881841" +FALSE "e" NA 0 "GSM881842" +FALSE "e" NA 0 "GSM881843" +FALSE "e" NA 0 "GSM881859" +FALSE "e" NA 0 "GSM881860" +FALSE "e" NA 0 "GSM881861" +FALSE "e" NA 0 "GSM896067" +FALSE "e" NA 0 "GSM896068" +FALSE "e" NA 0 "GSM896069" +FALSE "e" NA 0 "GSM896070" +FALSE "e" NA 0 "GSM896071" +FALSE "e" NA 0 "GSM896072" +FALSE "e" NA 0 "GSM896073" +FALSE "e" NA 0 "GSM896074" +FALSE "e" NA 0 "GSM907178" +FALSE "e" NA 0 "GSM907179" +FALSE "e" NA 0 "GSM907180" +FALSE "e" NA 0 "GSM907183" +FALSE "e" NA 0 "GSM907184" +FALSE "e" NA 0 "GSM920571" +FALSE "e" NA 0 "GSM920572" +FALSE "e" NA 0 "GSM920573" +FALSE "e" NA 0 "GSM920574" +FALSE "e" NA 0 "GSM960658" +FALSE "e" NA 0 "GSM960659" +FALSE "e" NA 0 "GSM960660" +FALSE "e" NA 0 "GSM960667" +FALSE "e" NA 0 "GSM960668" +FALSE "e" NA 0 "GSM960669" +FALSE "e" NA 0 "GSM98269" +FALSE "e" NA 0 "GSM98270" +FALSE "e" NA 0 "GSM98271" +FALSE "e" NA 0 "GSM98286" +FALSE "e" NA 0 "GSM992848" +FALSE "e" NA 0 "GSM992849" +FALSE "e" NA 0 "GSM992850" +FALSE "e" NA 0 "GSM1571870" +FALSE "e" NA 0 "GSM1571871" +FALSE "e" NA 0 "GSM1571872" +FALSE "e" NA 0 "GSM1571873" +FALSE "e" NA 0 "GSM1571874" +FALSE "e" NA 0 "GSM1571875" +FALSE "e" NA 0 "GSM1571876" +FALSE "e" NA 0 "GSM1571877" +FALSE "e" NA 0 "GSM1571878" +FALSE "e" NA 0 "GSM1571879" +FALSE "e" NA 0 "GSM1571880" +FALSE "e" NA 0 "GSM1571881" +FALSE "e" NA 0 "GSM1571882" +FALSE "e" NA 0 "GSM1571883" +FALSE "e" NA 0 "GSM1571884" +FALSE "e" NA 0 "GSM1571885" +FALSE "e" NA 0 "GSM1571886" +FALSE "e" NA 0 "GSM1627961" +FALSE "e" NA 0 "GSM1627962" From 39c9f40f2606d46586aa384613d8c48caa7f1792 Mon Sep 17 00:00:00 2001 From: Kostya HPC Date: Thu, 21 Jun 2018 19:57:25 -0400 Subject: [PATCH 06/18] added precision-recall evaluation for each gene and condition cluster (previously it was only by condition cluster); started writing code that uses the xarray module to make a 4D DataArray of AUPRs as a function of condition and gene cluster, random seed, and tau. Next step is plotting AUPR as a function of tau for each bicluster and seed, and recording the optimal (median across seeds of max across taus) tau for each bicluster. --- inferelator_ng/inferecladr_workflow.py | 59 ++++++++++++++++++++++++-- 1 file changed, 55 insertions(+), 4 deletions(-) diff --git a/inferelator_ng/inferecladr_workflow.py b/inferelator_ng/inferecladr_workflow.py index 4cb666d..f4f62de 100644 --- a/inferelator_ng/inferecladr_workflow.py +++ b/inferelator_ng/inferecladr_workflow.py @@ -9,6 +9,7 @@ import datetime from kvsstcp.kvsclient import KVSClient import pandas as pd +import xarray as xr from . import utils from bbsr_tfa_workflow import BBSR_TFA_Workflow from prior_gs_split_workflow import PriorGoldStandardSplitWorkflowBase @@ -25,6 +26,7 @@ class InfereCLaDR_Workflow(BBSR_TFA_Workflow, PriorGoldStandardSplitWorkflowBase): expr_clust_files = ["clusters/expr_clust1.tsv", "clusters/expr_clust2.tsv", "clusters/expr_clust3.tsv", "clusters/expr_clust4.tsv"] + gene_clust_files = ["clusters/genes_clust1.tsv", "clusters/genes_clust2.tsv", "clusters/genes_clust3.tsv", "clusters/genes_clust4.tsv", "clusters/genes_clust5.tsv"] meta_clust_files = ["clusters/meta_clust1.tsv", "clusters/meta_clust2.tsv", "clusters/meta_clust3.tsv", "clusters/meta_clust4.tsv"] seeds = range(42,62) taus = [0, 5, 10, 20, 30, 40, 50, 60, 70, 80, 90, 100, 120, 140, 160, 200, 250] @@ -51,18 +53,49 @@ def optimize_taus(self): (run_result.clust, run_result.seed, run_result.tau) = (clust, seed, tau) (run_result.betas, run_result.rescaled_betas) = (self.betas, self.rescaled_betas) (run_result.priors_data, run_result.gold_standard) = (self.priors_data, self.gold_standard) + self.set_gene_clusters() + run_result.gene_clust_index = self.gene_clust_index run_result.evaluate_tau_run() - import pdb; pdb.set_trace() run_objs.append(run_result) - self.results_by_clust_seed_tau = run_objs + self.results_by_clust_seed_tau = run_objs + import pdb; pdb.set_trace() + def set_gene_clusters(self): + gene_clust_index=[] + for gene_clust_file in self.gene_clust_files: + file_path = self.input_file(gene_clust_file) + genes_index = self.read_gene_clust_names(file_path) + gene_clust_index.append(genes_index) + self.gene_clust_index = gene_clust_index + + def read_gene_clust_names(self, file_like): + "Read gene names from one-column tsv file. Return list of names." + exp = pd.read_csv(file_like, sep="\t", header=None) + assert exp.shape[1] == 1, "gene cluster file should have one column " + return list(exp[0]) + ## with a vector of taus, build custom logic for a final design and response # loop over bootstraps: def run_with_full_prior(self): - #self.run(X, Y, etc...) + #self.optimize_taus(X, Y, etc...) raise NotImplementedError # implement later + def emit_results_by_cluster(self): + self.create_auprs_xarray() + + def create_auprs_xarray(self): + #Create a 4D DataArray with predicted AUPR as a function of 1) condition cluster, 2) gene cluster, 3) random seed, and 4) tau: + cond_clust_coords = ["cond_clust" + str(s+1) for s in range(len(self.expr_clust_files))] + gene_clust_coords = ["gene_clust" + str(s+1) for s in range(len(self.gene_clust_files))] + #Empty 4D array of zeros: + auprs_xarray = xr.DataArray(np.zeros((len(self.expr_clust_files), len(self.gene_clust_files), len(self.seeds), len(self.taus))), dims=['cond_clusts', 'gene_clusts', 'rand_seeds', 'taus'], coords=[cond_clust_coords, gene_clust_coords, self.seeds, self.taus]) + #Fill in the AUPR values: + for run_result in self.results_by_clust_seed_tau: + auprs_xarray[run_result.clust,:,:,:].loc[:,run_result.seed,run_result.tau] = run_result.recall_precision_by_gene_clust[2] + + self.auprs_xarray = auprs_xarray + #define your own emit_results: def emit_results(self, betas, rescaled_betas, gold_standard, priors): print "skipping emit results" @@ -74,7 +107,25 @@ class Results_of_a_Run(object): def evaluate_tau_run(self): self.results_processor = ResultsProcessorForGoldStandardSplit(self.betas, self.rescaled_betas) self.combined_confidences = self.results_processor.compute_combined_confidences() - (self.recall, self.precision) = self.results_processor.calculate_precision_recall(self.combined_confidences, self.gold_standard, self.priors_data) + (filter_index, filter_cols) = self.results_processor.get_nonempty_rows_cols(self.combined_confidences, self.gold_standard) + (combined_confidences_filtered, gold_standard_filtered) = self.results_processor.create_filtered_gold_standard_and_confidences(self.combined_confidences, self.gold_standard, self.priors_data, filter_index, filter_cols) + (self.recall, self.precision) = self.results_processor.calculate_precision_recall(combined_confidences_filtered, gold_standard_filtered) self.aupr = self.results_processor.calculate_aupr(self.recall, self.precision) + recall_by_gene_clust = [] + precision_by_gene_clust = [] + aupr_by_gene_clust = [] + for this_gene_clust_index in self.gene_clust_index: + genes_index_filtered = set(this_gene_clust_index).intersection(filter_index) + (combined_confidences_gclust, gold_standard_gclust) = self.results_processor.create_filtered_gold_standard_and_confidences(self.combined_confidences, self.gold_standard, self.priors_data, genes_index_filtered, filter_cols) + (recall, precision) = self.results_processor.calculate_precision_recall(combined_confidences_gclust, gold_standard_gclust) + aupr = self.results_processor.calculate_aupr(recall, precision) + + recall_by_gene_clust.append(recall) + precision_by_gene_clust.append(precision) + aupr_by_gene_clust.append(aupr) + + self.recall_precision_by_gene_clust = [recall_by_gene_clust, precision_by_gene_clust, aupr_by_gene_clust] + + From 400f086e18d64e072df78ecaadc63edc599a5696 Mon Sep 17 00:00:00 2001 From: Kostya HPC Date: Thu, 5 Jul 2018 19:35:15 -0400 Subject: [PATCH 07/18] added plotting of RNA half-life distributions for every bicluster and every prior resample, and predicting the optimal half-life for each bicluster by taking the median across prior resamples --- inferelator_ng/inferecladr_workflow.py | 36 +++++++++++++++++++++++++- 1 file changed, 35 insertions(+), 1 deletion(-) diff --git a/inferelator_ng/inferecladr_workflow.py b/inferelator_ng/inferecladr_workflow.py index f4f62de..c492020 100644 --- a/inferelator_ng/inferecladr_workflow.py +++ b/inferelator_ng/inferecladr_workflow.py @@ -14,6 +14,7 @@ from bbsr_tfa_workflow import BBSR_TFA_Workflow from prior_gs_split_workflow import PriorGoldStandardSplitWorkflowBase from prior_gs_split_workflow import ResultsProcessorForGoldStandardSplit +import matplotlib.pyplot as plt # Connect to the key value store service (its location is found via an @@ -59,7 +60,7 @@ def optimize_taus(self): run_objs.append(run_result) self.results_by_clust_seed_tau = run_objs - import pdb; pdb.set_trace() + self.emit_results_by_cluster() def set_gene_clusters(self): gene_clust_index=[] @@ -83,6 +84,10 @@ def run_with_full_prior(self): def emit_results_by_cluster(self): self.create_auprs_xarray() + self.calculate_predicted_half_lives() + self.output_dir = os.path.join(self.input_dir, datetime.datetime.now().strftime('%Y-%m-%d_%H-%M-%S')) + self.predicted_half_lives.to_pandas.to_csv(os.path.join(self.output_dir, 'predicted_half-lives.tsv'), sep = '\t') + self.plot_aupr_vs_tau() def create_auprs_xarray(self): #Create a 4D DataArray with predicted AUPR as a function of 1) condition cluster, 2) gene cluster, 3) random seed, and 4) tau: @@ -96,6 +101,35 @@ def create_auprs_xarray(self): self.auprs_xarray = auprs_xarray + def calculate_predicted_half_lives(self): + max_taus_by_GC_CC_seed=self.auprs_xarray.coords['taus'][self.auprs_xarray.argmax('taus')[:,:,:]]*np.log(2) + self.predicted_half_lives = max_taus_by_GC_CC_seed.median('rand_seeds') + + def plot_aupr_vs_tau(self): + os.makedirs(self.output_dir) + fig, axes = plt.subplots(nrows=len(self.auprs_xarray.coords['gene_clusts']), ncols=len(self.auprs_xarray.coords['cond_clusts']), figsize=(10,8)) + #plt.setp(axes.flat, xlabel="RNA half-life (minutes)", ylabel="AUPR") + ylim_min = self.auprs_xarray.min() + ylim_max = self.auprs_xarray.max() + half_lives = self.auprs_xarray.coords['taus']*np.log(2) + + for gene_idx in range(len(axes)): + axes[gene_idx, 0].set_ylabel("AUPR", fontsize=8) + for cond_idx in range(len(axes[0])): + axes[-1, cond_idx].set_xlabel("RNA half-life (minutes)", fontsize=8) + axes[gene_idx, cond_idx].set_ylim([ylim_min,ylim_max]) + axes[gene_idx, cond_idx].tick_params(labelsize=6) + for seed in self.auprs_xarray.coords['rand_seeds']: + auprs_profile = self.auprs_xarray[cond_idx,gene_idx,:,:].loc[seed,:] + axes[gene_idx, cond_idx].plot(half_lives, auprs_profile) + axes[gene_idx, cond_idx].plot(half_lives[np.argmax(auprs_profile)], np.max(auprs_profile), 'o') + + fig.tight_layout() + fig.subplots_adjust(left=0.15, top=0.95) + plt.savefig(os.path.join(self.output_dir, 'auprs_panel.pdf')) + plt.close() + + #define your own emit_results: def emit_results(self, betas, rescaled_betas, gold_standard, priors): print "skipping emit results" From b99413c77c721c6c5aa50371ed3ce39bdd060d9e Mon Sep 17 00:00:00 2001 From: Kostya HPC Date: Sat, 14 Jul 2018 17:24:39 -0400 Subject: [PATCH 08/18] removed extra kvs files; kvs still doesn't work for more than 1 task and 1 node --- inferelator_ng/inferecladr_workflow.py | 10 +++++----- 1 file changed, 5 insertions(+), 5 deletions(-) diff --git a/inferelator_ng/inferecladr_workflow.py b/inferelator_ng/inferecladr_workflow.py index c492020..ede0378 100644 --- a/inferelator_ng/inferecladr_workflow.py +++ b/inferelator_ng/inferecladr_workflow.py @@ -7,7 +7,7 @@ import mi_R import bbsr_python import datetime -from kvsstcp.kvsclient import KVSClient +#from kvsstcp.kvsclient import KVSClient import pandas as pd import xarray as xr from . import utils @@ -20,9 +20,9 @@ # Connect to the key value store service (its location is found via an # environment variable that is set when this is started vid kvsstcp.py # --execcmd). -kvs = KVSClient() +#kvs = KVSClient() # Find out which process we are (assumes running under SLURM). -rank = int(os.environ['SLURM_PROCID']) +#rank = int(os.environ['SLURM_PROCID']) class InfereCLaDR_Workflow(BBSR_TFA_Workflow, PriorGoldStandardSplitWorkflowBase): @@ -86,7 +86,8 @@ def emit_results_by_cluster(self): self.create_auprs_xarray() self.calculate_predicted_half_lives() self.output_dir = os.path.join(self.input_dir, datetime.datetime.now().strftime('%Y-%m-%d_%H-%M-%S')) - self.predicted_half_lives.to_pandas.to_csv(os.path.join(self.output_dir, 'predicted_half-lives.tsv'), sep = '\t') + os.makedirs(self.output_dir) + self.predicted_half_lives.to_pandas().to_csv(os.path.join(self.output_dir, 'predicted_half-lives.tsv'), sep = '\t') self.plot_aupr_vs_tau() def create_auprs_xarray(self): @@ -106,7 +107,6 @@ def calculate_predicted_half_lives(self): self.predicted_half_lives = max_taus_by_GC_CC_seed.median('rand_seeds') def plot_aupr_vs_tau(self): - os.makedirs(self.output_dir) fig, axes = plt.subplots(nrows=len(self.auprs_xarray.coords['gene_clusts']), ncols=len(self.auprs_xarray.coords['cond_clusts']), figsize=(10,8)) #plt.setp(axes.flat, xlabel="RNA half-life (minutes)", ylabel="AUPR") ylim_min = self.auprs_xarray.min() From 1997c11b7ab305187e61c12fb9b7283377276d38 Mon Sep 17 00:00:00 2001 From: Kostya HPC Date: Sun, 15 Jul 2018 01:04:45 -0400 Subject: [PATCH 09/18] removed redundancy with creating an extra class in yeast_inferecladr_workflow, which added the prior-splitting class, which is already added in the inferecladr class in the first place --- yeast_inferecladr_workflow_runner.py | 20 ++++++++++---------- 1 file changed, 10 insertions(+), 10 deletions(-) diff --git a/yeast_inferecladr_workflow_runner.py b/yeast_inferecladr_workflow_runner.py index 13aaf50..b4ad52e 100644 --- a/yeast_inferecladr_workflow_runner.py +++ b/yeast_inferecladr_workflow_runner.py @@ -2,21 +2,21 @@ from inferelator_ng.prior_gs_split_workflow import PriorGoldStandardSplitWorkflowBase from inferelator_ng.inferecladr_workflow import InfereCLaDR_Workflow -class InfereCLaDR_Workflow_with_Prior_GS_split(InfereCLaDR_Workflow, PriorGoldStandardSplitWorkflowBase): - """ - The class BBSR_TFA_Workflow_with_Prior_GS_split is a case of multiple inheritance, - as it inherits both from BBSR_TFA_Workflow and PriorGoldStandardSplitWorkflowBase - """ -workflow = InfereCLaDR_Workflow_with_Prior_GS_split() +workflow = InfereCLaDR_Workflow() # Common configuration parameters workflow.input_dir = 'data/yeast' -#workflow.expression_matrix_file = "clusters/expr_clust1.tsv" -#workflow.meta_data_file = "clusters/meta_clust1.tsv" +#workflow.expr_clust_files = ["clusters/expr_clust1.tsv", "clusters/expr_clust2.tsv", "clusters/expr_clust3.tsv", "clusters/expr_clust4.tsv"] +workflow.expr_clust_files = ["clusters/expr_clust2.tsv", "clusters/expr_clust3.tsv"] +#workflow.meta_clust_files = ["clusters/meta_clust1.tsv", "clusters/meta_clust2.tsv", "clusters/meta_clust3.tsv", "clusters/meta_clust4.tsv"] +workflow.meta_clust_files = ["clusters/meta_clust2.tsv", "clusters/meta_clust3.tsv"] workflow.num_bootstraps = 1 workflow.delTmax = 6000 -workflow.delTmin = 0 -#workflow.tau = 45 +workflow.delTmin = 1 +#workflow.seeds = range(42,62) +workflow.seeds = range(42,44) +#workflow.taus = [0, 5, 10, 20, 30, 40, 50, 60, 70, 80, 90, 100, 120, 140, 160, 200, 250] +workflow.taus = [0, 5, 10] #workflow.run() workflow.reduce_searchspace=True workflow.optimize_taus() From d944f52f9fd7dcd037559948cfbd2e26805c6fc8 Mon Sep 17 00:00:00 2001 From: Kostya HPC Date: Mon, 23 Jul 2018 18:50:59 -0400 Subject: [PATCH 10/18] made the calculation of interp_res into a separate function so that it can be modified by other versions; i.e. for the InfereCLaDR to have tau as a vector instead of a number --- inferelator_ng/design_response_translation.py | 11 +++++++++-- 1 file changed, 9 insertions(+), 2 deletions(-) diff --git a/inferelator_ng/design_response_translation.py b/inferelator_ng/design_response_translation.py index 3cd4c16..9d41e43 100644 --- a/inferelator_ng/design_response_translation.py +++ b/inferelator_ng/design_response_translation.py @@ -74,7 +74,10 @@ def run(self, expression_mat, metadata_dataframe): off_fol = list(np.where(prev.str.contains(cond[following[off[0]]])==True)[0]) off_fol_delt = list(delt[off_fol]) following=following[:off[0]] + following[off[0]+1:] + off_fol - following_delt = following_delt[:off[0]] + following_delt[off[0]+1:]+[float(off_fol_delt[0]) + float(following_delt[off[0]])] + try: + following_delt = following_delt[:off[0]] + following_delt[off[0]+1:]+[float(off_fol_delt[0]) + float(following_delt[off[0]])] + except IndexError: + import pdb; pdb.set_trace() off = list(np.where(following_delt < [delTmin])[0]) n = len(following) @@ -96,7 +99,7 @@ def run(self, expression_mat, metadata_dataframe): des_tmp = np.concatenate((des_mat.values,exp_mat[cond[i]].values[:,np.newaxis]),axis=1) des_names = list(des_mat.columns)+[this_cond] des_mat=pd.DataFrame(des_tmp,index=des_mat.index,columns=des_names) - interp_res = (float(tau)/float(following_delt[cntr])) * (exp_mat[cond[j]].astype('float64') - exp_mat[cond[i]].astype('float64')) + exp_mat[cond[i]].astype('float64') + interp_res = compute_response_variable(self, tau, following_delt[cntr], exp_mat[cond[i]], exp_mat[cond[j]]) res_tmp = np.concatenate((res_mat.values,interp_res.values[:,np.newaxis]),axis=1) res_names = list(res_mat.columns)+[this_cond] res_mat=pd.DataFrame(res_tmp,index=res_mat.index,columns=res_names) @@ -126,3 +129,7 @@ def run(self, expression_mat, metadata_dataframe): res_mat.columns=cols_res_mat return (des_mat, res_mat) + + #implement the response variable formula for the current condition + def compute_response_variable(self, tau, following_delta, expr_current_condition, expr_following_condition): + return (float(tau)/float(following_delta)) * (expr_following_condition.astype('float64') - expr_current_condition.astype('float64')) + expr_current_condition.astype('float64') From ff386ae382b0a04b02bb58d915e4c26afbcc82a3 Mon Sep 17 00:00:00 2001 From: Kostya HPC Date: Mon, 23 Jul 2018 22:55:30 -0400 Subject: [PATCH 11/18] forgot to add 'self' before calling the new function compute_response_variable --- inferelator_ng/design_response_translation.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/inferelator_ng/design_response_translation.py b/inferelator_ng/design_response_translation.py index 9d41e43..e546578 100644 --- a/inferelator_ng/design_response_translation.py +++ b/inferelator_ng/design_response_translation.py @@ -99,7 +99,7 @@ def run(self, expression_mat, metadata_dataframe): des_tmp = np.concatenate((des_mat.values,exp_mat[cond[i]].values[:,np.newaxis]),axis=1) des_names = list(des_mat.columns)+[this_cond] des_mat=pd.DataFrame(des_tmp,index=des_mat.index,columns=des_names) - interp_res = compute_response_variable(self, tau, following_delt[cntr], exp_mat[cond[i]], exp_mat[cond[j]]) + interp_res = self.compute_response_variable(self, tau, following_delt[cntr], exp_mat[cond[i]], exp_mat[cond[j]]) res_tmp = np.concatenate((res_mat.values,interp_res.values[:,np.newaxis]),axis=1) res_names = list(res_mat.columns)+[this_cond] res_mat=pd.DataFrame(res_tmp,index=res_mat.index,columns=res_names) From 8fb8849cbb20a0f228d959b8848b81a3b2811545 Mon Sep 17 00:00:00 2001 From: Kostya HPC Date: Mon, 23 Jul 2018 22:57:45 -0400 Subject: [PATCH 12/18] forgot to remove 'self' in the argument when calling the new function compute_response_variable --- inferelator_ng/design_response_translation.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/inferelator_ng/design_response_translation.py b/inferelator_ng/design_response_translation.py index e546578..7a964a0 100644 --- a/inferelator_ng/design_response_translation.py +++ b/inferelator_ng/design_response_translation.py @@ -99,7 +99,7 @@ def run(self, expression_mat, metadata_dataframe): des_tmp = np.concatenate((des_mat.values,exp_mat[cond[i]].values[:,np.newaxis]),axis=1) des_names = list(des_mat.columns)+[this_cond] des_mat=pd.DataFrame(des_tmp,index=des_mat.index,columns=des_names) - interp_res = self.compute_response_variable(self, tau, following_delt[cntr], exp_mat[cond[i]], exp_mat[cond[j]]) + interp_res = self.compute_response_variable(tau, following_delt[cntr], exp_mat[cond[i]], exp_mat[cond[j]]) res_tmp = np.concatenate((res_mat.values,interp_res.values[:,np.newaxis]),axis=1) res_names = list(res_mat.columns)+[this_cond] res_mat=pd.DataFrame(res_tmp,index=res_mat.index,columns=res_names) From 4e141244ac20dc7081fcf1e6f80cae58acec0a45 Mon Sep 17 00:00:00 2001 From: Kostya HPC Date: Tue, 24 Jul 2018 22:27:59 -0400 Subject: [PATCH 13/18] this file has the mappings of every gene (not just the ones in the gold standard) to the gene clusters --- data/yeast/clusters/gn_clust_full.tsv | 5716 +++++++++++++++++++++++++ 1 file changed, 5716 insertions(+) create mode 100644 data/yeast/clusters/gn_clust_full.tsv diff --git a/data/yeast/clusters/gn_clust_full.tsv b/data/yeast/clusters/gn_clust_full.tsv new file mode 100644 index 0000000..9b2b48d --- /dev/null +++ b/data/yeast/clusters/gn_clust_full.tsv @@ -0,0 +1,5716 @@ +"YKR009C" 1 +"YDL157C" 2 +"YER059W" 1 +"YGL059W" 1 +"YDR481C" 2 +"YML113W" 2 +"YIL157C" 1 +"YPR003C" 2 +"YNR074C" 4 +"YLR154C-H" 5 +"YKL012W" 2 +"YJL147C" 1 +"YDL216C" 1 +"YNL320W" 2 +"YHL007C" 2 +"YPL223C" 5 +"YKL138C" 1 +"YNL126W" 2 +"YKL055C" 3 +"YML035C" 2 +"YER087C-B" 3 +"YIL160C" 1 +"YLR050C" 4 +"YOR037W" 1 +"YOL008W" 4 +"YOR072W-B" 2 +"YPL253C" 2 +"YDL048C" 3 +"YDR056C" 2 +"YNL083W" 1 +"YCR081W" 2 +"YDL159W" 3 +"YCR024C-B" 2 +"YPL154C" 4 +"YDR020C" 2 +"YOR290C" 2 +"YGR267C" 3 +"YNL216W" 2 +"YFL034C-B" 3 +"YEL031W" 2 +"YBR238C" 2 +"YFL045C" 2 +"YGL222C" 3 +"YIR021W" 2 +"YHR014W" 3 +"YEL006W" 1 +"YDL029W" 4 +"YLR401C" 2 +"YDR447C" 2 +"YOR192C-C" 3 +"YER026C" 4 +"YLR287C-A" 2 +"YKL195W" 5 +"YDR144C" 2 +"YDR439W" 1 +"YBR149W" 5 +"YER114C" 1 +"YMR247C" 2 +"YMR076C" 2 +"YGR056W" 2 +"YAL013W" 2 +"YPR002W" 1 +"YOR175C" 2 +"YDL167C" 2 +"YDR465C" 2 +"YJL201W" 4 +"YDR495C" 2 +"YDR501W" 2 +"YHL010C" 5 +"YHR152W" 2 +"YER035W" 1 +"YHR002W" 1 +"YPL020C" 1 +"YLR286C" 2 +"YKL061W" 3 +"YHR131C" 3 +"YJL185C" 1 +"YMR317W" 3 +"YIL125W" 1 +"YPL065W" 3 +"YGR130C" 1 +"YDL049C" 1 +"YBR065C" 3 +"YJR082C" 3 +"YMR182C" 3 +"YPL264C" 1 +"YPL199C" 2 +"YGR080W" 3 +"YLR125W" 3 +"YNL292W" 3 +"YAR033W" 5 +"YKL063C" 4 +"YIL010W" 2 +"YGR113W" 4 +"YLR266C" 2 +"YPL050C" 2 +"YDR447C.1" 2 +"YML019W" 2 +"YKL166C" 2 +"YJR139C" 4 +"YNR038W" 2 +"YJL165C" 4 +"YFL012W" 1 +"YDL086W" 4 +"YIL176C" 4 +"YKL096W" 2 +"YLR064W" 2 +"YBR194W" 3 +"YEL003W" 2 +"YDR205W" 1 +"YKL075C" 1 +"YHR198C" 1 +"YGL138C" 3 +"YMR212C" 2 +"YNR055C" 2 +"YNL222W" 3 +"YPR042C" 3 +"YLR149C" 1 +"YOR271C" 2 +"YHR197W" 2 +"YAL034C" 1 +"YOR084W" 1 +"YGL083W" 2 +"YDR140W" 4 +"YMR216C" 2 +"YJL042W" 5 +"YDR472W" 1 +"YDR207C" 1 +"YIL075C" 5 +"YGR010W" 1 +"YDR245W" 2 +"YDR473C" 3 +"YOR187W" 5 +"YDR486C" 1 +"YMR003W" 1 +"YGL121C" 1 +"YJL186W" 2 +"YBR285W" 1 +"YOL028C" 2 +"YMR220W" 2 +"YAR002W" 2 +"YMR049C" 2 +"YOR069W" 2 +"YDR479C" 5 +"YKR038C" 2 +"YPR106W" 2 +"YBL031W" 2 +"YOR124C" 1 +"YDL149W" 1 +"YDR072C" 4 +"YPL269W" 1 +"YGL107C" 1 +"YGR110W" 1 +"YOR394C-A" 3 +"YNL291C" 2 +"YBR157C" 2 +"YKL192C" 5 +"YKR035W-A" 1 +"YJL047C-A" 1 +"YLR283W" 3 +"YMR291W" 1 +"YLR151C" 5 +"YOR165W" 4 +"YHR079C" 1 +"YMR184W" 2 +"YBL018C" 1 +"YNL095C" 2 +"YPL101W" 2 +"YGR124W" 2 +"YBR169C" 1 +"YMR069W" 3 +"YDR068W" 1 +"YBR260C" 2 +"YML017W" 3 +"YDR466W" 1 +"YCL068C" 3 +"YFL049W" 1 +"YKL167C" 1 +"YOR264W" 3 +"YIR039C" 5 +"YDL061C" 2 +"YKL108W" 1 +"YLR127C" 2 +"YOL122C" 2 +"YKL208W" 1 +"YPR117W" 1 +"YPL119C" 1 +"YDL177C" 1 +"YDR195W" 1 +"YER053C" 1 +"YOL105C" 2 +"YOR104W" 1 +"YCL018W" 1 +"YBR110W" 2 +"YDR518W" 2 +"YDR210W" 2 +"YJR033C" 1 +"YLR089C" 2 +"YBL036C" 2 +"YDR363W" 1 +"YBR002C" 3 +"YMR227C" 2 +"YJL097W" 2 +"YNL118C" 2 +"YIL161W" 3 +"YCL054W" 2 +"YDR006C" 1 +"YOL019W-A" 3 +"YOL162W" 5 +"YPR121W" 1 +"YPR031W" 1 +"YFL039C" 2 +"YFL047W" 2 +"YDR331W" 2 +"YGR174W-A" 1 +"YDR515W" 2 +"YDL184C" 2 +"YHR128W" 2 +"YDR261C" 2 +"YOL077W-A" 1 +"YJR058C" 1 +"YDR118W" 1 +"YDR119W" 2 +"YDL125C" 4 +"YDL191W" 2 +"YMR178W" 4 +"YGR083C" 2 +"YDR253C" 1 +"YOR285W" 4 +"YBR017C" 2 +"YPL235W" 2 +"YFL067W" 3 +"YGR075C" 5 +"YOR223W" 5 +"YBR084C-A" 2 +"YBR296C" 2 +"YIL132C" 2 +"YML064C" 4 +"YDL176W" 1 +"YGL114W" 2 +"YJL192C" 2 +"YHR005C" 2 +"YPL130W" 3 +"YJR067C" 3 +"YCR088W" 2 +"YDR393W" 1 +"YPL215W" 1 +"YGR279C" 2 +"YAL003W" 2 +"YOR161C-C" 3 +"YML023C" 4 +"YDR168W" 5 +"YGL196W" 1 +"YFR036W" 1 +"YBL089W" 2 +"YHR124W" 3 +"YGL036W" 1 +"YJL134W" 2 +"YDR231C" 1 +"YHR114W" 3 +"YML010W" 2 +"YHR053C" 1 +"YGL104C" 5 +"YMR169C" 5 +"YMR226C" 4 +"YOL071W" 1 +"YDL012C" 5 +"YDR206W" 1 +"YHR191C" 3 +"YOR329C" 1 +"YOL011W" 2 +"YPL002C" 1 +"YER167W" 1 +"YKL194C" 1 +"YDR450W" 2 +"YNR062C" 3 +"YHL020C" 2 +"YOR025W" 2 +"YGL179C" 1 +"YFL046W" 3 +"YHL032C" 1 +"YKL140W" 2 +"YPL127C" 5 +"YKL211C" 2 +"YBR142W" 2 +"YBR295W" 1 +"YDR223W" 1 +"YKL085W" 1 +"YLR029C" 2 +"YCR020W-B" 3 +"YJL025W" 2 +"YMR048W" 1 +"YLR312W-A" 1 +"YML091C" 1 +"YLR299W" 1 +"YMR128W" 2 +"YPR155C" 3 +"YLR240W" 1 +"YOR338W" 1 +"YIL052C" 2 +"YLR137W" 1 +"YJL196C" 4 +"YHR133C" 2 +"YOR179C" 3 +"YMR131C" 2 +"YNL055C" 4 +"YJR135C" 1 +"YIL128W" 2 +"YBR128C" 5 +"YCR094W" 2 +"YLR212C" 2 +"YDL108W" 1 +"YJR151C" 1 +"YOR042W" 1 +"YGL252C" 1 +"YLR262C" 2 +"YDL244W" 1 +"YDR076W" 3 +"YLL050C" 4 +"YPL131W" 2 +"YMR221C" 2 +"YBR215W" 1 +"YBR258C" 2 +"YFL034C-A" 2 +"YKR068C" 4 +"YDR252W" 5 +"YLL027W" 1 +"YDR069C" 3 +"YBR084W" 2 +"YKL132C" 3 +"YOL005C" 2 +"YJL200C" 2 +"YKR092C" 2 +"YKR042W" 2 +"YMR283C" 4 +"YJL082W" 1 +"YDL168W" 5 +"YGL195W" 2 +"YGR088W" 5 +"YMR135C" 1 +"YDL085W" 5 +"YDL236W" 2 +"YLR300W" 2 +"YCR036W" 4 +"YPR184W" 1 +"YHR046C" 2 +"YGR108W" 2 +"YPL078C" 1 +"YBR095C" 1 +"YCL032W" 3 +"YKL135C" 1 +"YBR076W" 3 +"YDL223C" 5 +"YNR067C" 2 +"YKR086W" 2 +"YBR186W" 3 +"YGR104C" 2 +"YAL067C" 3 +"YLR346C" 5 +"YDR516C" 1 +"YDR239C" 2 +"YIL019W" 2 +"YMR115W" 5 +"YDL173W" 4 +"YOL066C" 2 +"YCL043C" 2 +"YFL052W" 1 +"YEL051W" 4 +"YOR011W-A" 2 +"YNL163C" 2 +"YGL006W" 1 +"YGL211W" 3 +"YDL055C" 2 +"YBL017C" 2 +"YPL206C" 5 +"YPL095C" 3 +"YBR268W" 1 +"YGL084C" 2 +"YOL090W" 2 +"YGL228W" 2 +"YLL051C" 2 +"YLL014W" 2 +"YHR170W" 2 +"YML124C" 2 +"YHR065C" 2 +"YOR062C" 5 +"YOR157C" 5 +"YOL036W" 1 +"YPL067C" 5 +"YMR306W" 3 +"YOL145C" 2 +"YOL098C" 2 +"YKL219W" 4 +"YGR178C" 2 +"YOL021C" 2 +"YBR011C" 2 +"YJR140C" 2 +"YGR144W" 1 +"YMR008C" 4 +"YMR322C" 1 +"YBR141C" 2 +"YJL133W" 3 +"YNR061C" 2 +"YDR079W" 3 +"YDR454C" 2 +"YIL009W" 1 +"YPL262W" 5 +"YIL166C" 2 +"YFR038W" 2 +"YDR266C" 2 +"YLR001C" 1 +"YER186C" 5 +"YML125C" 2 +"YGL048C" 4 +"YBR028C" 3 +"YHR118C" 2 +"YGR081C" 2 +"YKL047W" 4 +"YHL001W" 2 +"YDR440W" 2 +"YNL287W" 5 +"YDR460W" 3 +"YLR313C" 3 +"YDR062W" 2 +"YOR178C" 1 +"YJL016W" 1 +"YOR279C" 1 +"YJL218W" 2 +"YDL218W" 1 +"YGR071C" 2 +"YLR256W" 1 +"YNL032W" 2 +"YJR100C" 1 +"YER111C" 3 +"YBL095W" 1 +"YJR123W" 2 +"YML083C" 3 +"YML072C" 4 +"YBL108C-A" 2 +"YEL021W" 1 +"YLR343W" 2 +"YGR183C" 1 +"YHR169W" 2 +"YIL143C" 1 +"YNL107W" 3 +"YML102W" 2 +"YGR027C" 2 +"YHR146W" 1 +"YDR361C" 2 +"YIL005W" 2 +"YBR301W" 3 +"YHR097C" 1 +"YGL253W" 2 +"YOR390W" 4 +"YGR258C" 1 +"YDL229W" 2 +"YDL119C" 5 +"YJL108C" 2 +"YHR157W" 2 +"YJL193W" 2 +"YDL155W" 2 +"YHR007C-A" 3 +"YER142C" 5 +"YMR190C" 3 +"YOR272W" 2 +"YHR057C" 1 +"YER103W" 1 +"YHR006W" 1 +"YIR026C" 2 +"YBL090W" 1 +"YHR024C" 2 +"YOR045W" 2 +"YEL062W" 2 +"YOR275C" 1 +"YKL125W" 1 +"YPL195W" 4 +"YDR145W" 1 +"YGR140W" 2 +"YJR057W" 5 +"YIL151C" 1 +"YPL216W" 3 +"YER172C" 2 +"YGR204C-A" 3 +"YKL110C" 2 +"YMR088C" 1 +"YDL028C" 3 +"YOR166C" 2 +"YJL205C" 4 +"YLR052W" 3 +"YNR027W" 3 +"YNL011C" 4 +"YLL049W" 1 +"YJR121W" 1 +"YDR539W" 4 +"YJR088C" 4 +"YNL313C" 2 +"YKL180W" 2 +"YDL106C" 1 +"YPL165C" 3 +"YKL116C" 2 +"YMR301C" 2 +"YNR020C" 3 +"YER140W" 1 +"YNR003C" 2 +"YHR204W" 2 +"YIR034C" 1 +"YPL259C" 2 +"YEL036C" 2 +"YLR185W" 2 +"YBR240C" 5 +"YPR178W" 1 +"YMR257C" 1 +"YOR016C" 2 +"YCR059C" 2 +"YML093W" 2 +"YPL081W" 2 +"YNL225C" 1 +"YHR087W" 5 +"YBR294W" 1 +"YDR055W" 1 +"YER041W" 1 +"YHR038W" 3 +"YOR266W" 5 +"YOL063C" 1 +"YNR030W" 2 +"YLL028W" 4 +"YFR030W" 1 +"YHR005C-A" 4 +"YFR004W" 5 +"YDR459C" 2 +"YCR076C" 5 +"YPR029C" 1 +"YMR087W" 5 +"YKL059C" 1 +"YKL081W" 2 +"YLL058W" 1 +"YPR055W" 1 +"YFL059W" 1 +"YMR149W" 2 +"YNR017W" 2 +"YCR007C" 3 +"YDR146C" 2 +"YJL088W" 1 +"YCR098C" 3 +"YDR318W" 1 +"YHR043C" 2 +"YPR048W" 2 +"YCR011C" 4 +"YFR035C" 3 +"YLR181C" 3 +"YOR321W" 3 +"YFL028C" 3 +"YKL188C" 1 +"YBR108W" 1 +"YGL089C" 2 +"YPR069C" 2 +"YDR415C" 2 +"YOR355W" 2 +"YDR243C" 5 +"YOR302W" 1 +"YCR073C" 1 +"YLR105C" 4 +"YDR262W" 1 +"YOL109W" 4 +"YLR248W" 1 +"YDR530C" 4 +"YBR246W" 2 +"YKR056W" 2 +"YER137C" 2 +"YGR210C" 2 +"YML007C-A" 2 +"YGL031C" 2 +"YJL166W" 4 +"YNL329C" 2 +"YER013W" 2 +"YOR094W" 2 +"YGL013C" 1 +"YBR270C" 1 +"YOL112W" 1 +"YHR001W" 1 +"YKR062W" 2 +"YAL011W" 2 +"YML067C" 2 +"YPR015C" 1 +"YIL094C" 2 +"YIL159W" 3 +"YJL085W" 2 +"YEL076C" 3 +"YOR074C" 2 +"YBL072C" 2 +"YFR032C" 3 +"YER183C" 2 +"YKL069W" 4 +"YKR037C" 1 +"YER069W" 1 +"YDR001C" 5 +"YOR032C" 3 +"YNR075W" 2 +"YPL097W" 1 +"YHR166C" 1 +"YGL143C" 4 +"YGL095C" 2 +"YKR039W" 1 +"YNL307C" 2 +"YMR280C" 1 +"YJL148W" 2 +"YLR218C" 5 +"YHR158C" 1 +"YER040W" 1 +"YJR032W" 2 +"YBL027W" 2 +"YER102W" 2 +"YGL189C" 2 +"YCL058C" 3 +"YIL162W" 1 +"YJL125C" 2 +"YNL116W" 1 +"YLR233C" 1 +"YKR050W" 3 +"YPL033C" 1 +"YDL112W" 2 +"YLR461W" 4 +"YPL034W" 5 +"YDL103C" 2 +"YHL018W" 3 +"YFR048W" 1 +"YOL032W" 1 +"YLR303W" 1 +"YJL100W" 1 +"YCR042C" 1 +"YGL001C" 2 +"YPR200C" 3 +"YLR387C" 1 +"YJL068C" 5 +"YGR272C" 2 +"YJL158C" 2 +"YCR023C" 4 +"YMR279C" 3 +"YDL057W" 1 +"YGL038C" 5 +"YML117W" 1 +"YLL038C" 2 +"YDL105W" 3 +"YBR217W" 1 +"YGR024C" 2 +"YDR127W" 2 +"YOR028C" 5 +"YLR265C" 2 +"YKR057W" 2 +"YNR043W" 2 +"YMR237W" 4 +"YDR400W" 2 +"YPL036W" 1 +"YGR085C" 2 +"YFR050C" 5 +"YCR010C" 1 +"YDR353W" 2 +"YOR125C" 3 +"YLR307C-A" 1 +"YOR252W" 2 +"YGL108C" 3 +"YJL089W" 1 +"YMR265C" 1 +"YDR404C" 2 +"YKL027W" 2 +"YKL074C" 1 +"YPL189W" 2 +"YBR112C" 2 +"YLR336C" 2 +"YBR022W" 4 +"YBR251W" 1 +"YGR148C" 2 +"YBR291C" 1 +"YAR014C" 2 +"YPL134C" 1 +"YGR078C" 2 +"YNR072W" 3 +"YGR092W" 2 +"YLR018C" 2 +"YAL044C" 2 +"YJR074W" 3 +"YCR017C" 2 +"YGL240W" 3 +"YKR044W" 2 +"YFR045W" 1 +"YCR014C" 3 +"YPR175W" 2 +"YDR540C" 3 +"YBR296C-A" 3 +"YGR214W" 2 +"YBR053C" 5 +"YPL017C" 5 +"YDR397C" 2 +"YJR014W" 2 +"YHR040W" 2 +"YJR079W" 3 +"YJL043W" 3 +"YER123W" 1 +"YDL044C" 1 +"YCR063W" 2 +"YGL169W" 2 +"YDR345C" 4 +"YDR489W" 4 +"YLR026C" 2 +"YGR198W" 2 +"YIL042C" 1 +"YLR364W" 1 +"YDL033C" 1 +"YML123C" 2 +"YCR083W" 1 +"YHR011W" 1 +"YOR090C" 3 +"YDR192C" 1 +"YPL258C" 1 +"YJL140W" 5 +"YDR416W" 1 +"YAL042W" 2 +"YGR205W" 1 +"YPL178W" 2 +"YER007C-A" 2 +"YLL033W" 2 +"YKL190W" 2 +"YBR197C" 2 +"YMR044W" 1 +"YOR076C" 2 +"YLR020C" 2 +"YPR062W" 4 +"YEL061C" 2 +"YLR260W" 1 +"YOR209C" 2 +"YLR396C" 2 +"YMR294W" 1 +"YLR166C" 2 +"YIL044C" 4 +"YOR003W" 1 +"YNL233W" 1 +"YKL035W" 5 +"YGL057C" 1 +"YOL061W" 2 +"YKL053C-A" 1 +"YER124C" 2 +"YBL068W" 2 +"YPL272C" 1 +"YDR099W" 4 +"YMR318C" 2 +"YGL153W" 1 +"YKR088C" 4 +"YGR168C" 1 +"YDL199C" 1 +"YKL045W" 3 +"YIL009C-A" 4 +"YFL030W" 1 +"YER139C" 1 +"YKL015W" 1 +"YER019C-A" 2 +"YPR187W" 2 +"YCL039W" 1 +"YCL037C" 2 +"YLR139C" 2 +"YPR193C" 1 +"YOR319W" 1 +"YHR149C" 2 +"YNL263C" 2 +"YLR237W" 1 +"YLR454W" 4 +"YKL162C" 1 +"YDR100W" 4 +"YDR322C-A" 1 +"YGL094C" 1 +"YPL245W" 2 +"YHR036W" 1 +"YPR174C" 2 +"YJL056C" 4 +"YML065W" 1 +"YMR282C" 1 +"YAL017W" 1 +"YOL097C" 2 +"YKR087C" 2 +"YOR341W" 2 +"YJL083W" 1 +"YKL002W" 1 +"YCR075W-A" 2 +"YDR364C" 1 +"YKL089W" 1 +"YJR083C" 3 +"YLR433C" 2 +"YGR266W" 3 +"YOR174W" 3 +"YHR129C" 2 +"YOL015W" 3 +"YKL191W" 2 +"YHR214C-D" 3 +"YKR101W" 1 +"YER093C" 1 +"YAL001C" 1 +"YMR156C" 1 +"YDR090C" 2 +"YFR033C" 1 +"YGR287C" 3 +"YJL109C" 2 +"YPL204W" 1 +"YDR137W" 1 +"YPL153C" 1 +"YER149C" 3 +"YDL237W" 2 +"YLR275W" 3 +"YBR135W" 2 +"YDL148C" 2 +"YOR144C" 2 +"YDR381C-A" 1 +"YMR142C" 2 +"YOR228C" 5 +"YDL229W.1" 2 +"YDR387C" 5 +"YLR030W" 1 +"YKL187C" 1 +"YKL039W" 2 +"YLL040C" 1 +"YML008C" 2 +"YLR165C" 3 +"YBR138C" 2 +"YPL115C" 2 +"YFL020C" 4 +"YAL010C" 1 +"YNL167C" 1 +"YCR091W" 1 +"YKL037W" 3 +"YML015C" 3 +"YIR011C" 4 +"YGR240C-A" 3 +"YBL050W" 5 +"YHL030W" 1 +"YPL189C-A" 1 +"YMR298W" 4 +"YOL055C" 1 +"YMR132C" 2 +"YHR049W" 4 +"YJL030W" 2 +"YDR325W" 2 +"YMR275C" 1 +"YJL207C" 3 +"YDR363W-A" 4 +"YDR038C" 2 +"YKL048C" 1 +"YPL045W" 2 +"YMR239C" 2 +"YLR363C" 5 +"YPR006C" 1 +"YLR075W" 2 +"YMR043W" 1 +"YNL008C" 4 +"YLR363W-A" 2 +"YOR378W" 3 +"YBR273C" 1 +"YAL038W" 2 +"YHR070W" 2 +"YPR068C" 1 +"YJR120W" 2 +"YIL096C" 2 +"YLR038C" 1 +"YDR064W" 2 +"YNR004W" 2 +"YIL134W" 2 +"YIL121W" 5 +"YLR268W" 2 +"YMR161W" 2 +"YER064C" 2 +"YBR077C" 4 +"YCR054C" 1 +"YNR066C" 2 +"YIL006W" 1 +"YLR007W" 2 +"YDR175C" 1 +"YMR025W" 5 +"YDR375C" 3 +"YER176W" 2 +"YHR113W" 1 +"YDL060W" 2 +"YLR271W" 1 +"YPR179C" 1 +"YOR137C" 1 +"YJL063C" 1 +"YBR056W" 5 +"YDR191W" 2 +"YPR163C" 2 +"YGL178W" 1 +"YLR189C" 1 +"YOR152C" 1 +"YML021C" 3 +"YFL050C" 3 +"YNL295W" 1 +"YDR234W" 2 +"YDL222C" 5 +"YNL301C" 2 +"YMR274C" 1 +"YNL073W" 1 +"YBR275C" 3 +"YER093C-A" 3 +"YKL112W" 1 +"YMR137C" 1 +"YLR063W" 2 +"YIR007W" 1 +"YMR159C" 3 +"YIR030C" 2 +"YKR085C" 1 +"YGL068W" 1 +"YCL026C-A" 3 +"YOL068C" 1 +"YER170W" 3 +"YGL259W" 3 +"YIL150C" 3 +"YOL120C" 2 +"YJR099W" 2 +"YKL220C" 3 +"YJR150C" 1 +"YLR071C" 2 +"YGL254W" 5 +"YKL168C" 1 +"YHR051W" 1 +"YIL073C" 3 +"YBR162C" 2 +"YHR123W" 2 +"YHL028W" 3 +"YNL265C" 3 +"YGR197C" 1 +"YKL022C" 2 +"YPR181C" 2 +"YDR538W" 4 +"YDR496C" 2 +"YDL031W" 2 +"YDR188W" 5 +"YLR360W" 1 +"YBR219C" 3 +"YIL004C" 3 +"YDR337W" 1 +"YPR125W" 2 +"YML054C" 1 +"YIL038C" 2 +"YJR134C" 2 +"YDR336W" 1 +"YPL107W" 1 +"YPR081C" 1 +"YKL103C" 5 +"YIR023W" 2 +"YDR524C-B" 2 +"YLR342W-A" 2 +"YGL111W" 2 +"YML049C" 2 +"YJL162C" 1 +"YEL069C" 2 +"YGL091C" 1 +"YLR249W" 2 +"YLR316C" 2 +"YHR072W" 2 +"YLR328W" 3 +"YGL070C" 2 +"YBR023C" 2 +"YLR224W" 2 +"YEL038W" 2 +"YMR202W" 2 +"YDR200C" 3 +"YFR016C" 1 +"YGR141W" 1 +"YNL217W" 3 +"YKL121W" 1 +"YGR177C" 2 +"YCL034W" 2 +"YAL067W-A" 3 +"YOL020W" 2 +"YCR026C" 2 +"YBR136W" 1 +"YOR155C" 2 +"YGL122C" 1 +"YOR258W" 1 +"YKL034W" 1 +"YHR050W-A" 2 +"YKL165C" 2 +"YKL122C" 2 +"YLR037C" 2 +"YLR306W" 1 +"YOR347C" 1 +"YOL064C" 1 +"YDR452W" 4 +"YDR349C" 2 +"YFR019W" 1 +"YKL033W" 2 +"YGL096W" 1 +"YCL011C" 2 +"YDR288W" 4 +"YPL180W" 1 +"YDL104C" 5 +"YGR218W" 2 +"YGR036C" 5 +"YDR109C" 1 +"YBR252W" 2 +"YDL008W" 2 +"YDL139C" 2 +"YOR022C" 1 +"YPL066W" 5 +"YPR005C" 1 +"YHR155W" 1 +"YDL043C" 3 +"YKR049C" 5 +"YER036C" 2 +"YLR103C" 2 +"YKR043C" 2 +"YPR182W" 2 +"YOR351C" 3 +"YPL057C" 1 +"YOR171C" 1 +"YBR143C" 2 +"YDR002W" 2 +"YDR541C" 5 +"YGL012W" 2 +"YGR053C" 1 +"YDR531W" 4 +"YAL037C-A" 3 +"YDR224C" 2 +"YER168C" 2 +"YLR091W" 3 +"YDR347W" 2 +"YOR246C" 2 +"YLR222C" 2 +"YGR282C" 2 +"YMR241W" 2 +"YLR131C" 3 +"YML075C" 2 +"YPL096C-A" 2 +"YMR071C" 4 +"YPR093C" 1 +"YER006W" 2 +"YCR052W" 3 +"YFL020C.1" 4 +"YCL059C" 2 +"YOR190W" 3 +"YHR200W" 4 +"YOR257W" 4 +"YDR235W" 3 +"YGL238W" 2 +"YGR166W" 2 +"YDL046W" 5 +"YLR267W" 1 +"YOL154W" 4 +"YDR534C" 3 +"YDR354W" 2 +"YLR040C" 2 +"YMR037C" 1 +"YBR121C" 2 +"YLR457C" 1 +"YHR178W" 1 +"YHR085W" 2 +"YGR213C" 3 +"YHR140W" 1 +"YHR062C" 2 +"YOL142W" 2 +"YHR139C" 5 +"YBL049W" 5 +"YLR231C" 1 +"YOR047C" 4 +"YDR370C" 3 +"YPR107C" 3 +"YKR003W" 2 +"YLR437C" 3 +"YOR353C" 3 +"YLR274W" 2 +"YDR490C" 1 +"YLR214W" 2 +"YFR039C" 2 +"YBR151W" 5 +"YOL077C" 2 +"YDR458C" 1 +"YPL019C" 2 +"YPR140W" 1 +"YDR502C" 1 +"YKR104W" 3 +"YDL025C" 1 +"YHR063C" 2 +"YLL015W" 1 +"YKR098C" 1 +"YOL155W-A" 3 +"YDR061W" 1 +"YOR389W" 2 +"YER136W" 5 +"YPL026C" 1 +"YDL047W" 1 +"YNL049C" 2 +"YLR208W" 4 +"YGR149W" 1 +"YPL151C" 1 +"YDR043C" 1 +"YOR217W" 3 +"YGL171W" 2 +"YLR376C" 2 +"YML099C" 2 +"YBR079C" 2 +"YDL076C" 5 +"YML105C" 2 +"YPR135W" 2 +"YDL089W" 2 +"YOR080W" 2 +"YGR208W" 2 +"YBR131W" 2 +"YOR049C" 4 +"YLL006W" 1 +"YLR234W" 3 +"YPR010C" 2 +"YAL035W" 2 +"YMR123W" 2 +"YDR292C" 2 +"YMR010W" 2 +"YKL019W" 2 +"YOR238W" 2 +"YDR390C" 3 +"YNL259C" 4 +"YOL132W" 3 +"YER126C" 2 +"YGL189C.1" 2 +"YIL115C" 1 +"YDR528W" 2 +"YIL069C" 2 +"YGL156W" 5 +"YNL111C" 2 +"YMR078C" 2 +"YPR017C" 4 +"YPR043W" 2 +"YAR035C-A" 3 +"YCR090C" 2 +"YNL152W" 2 +"YGL168W" 5 +"YGL055W" 1 +"YGR170W" 3 +"YMR225C" 1 +"YER089C" 2 +"YOR349W" 2 +"YML131W" 5 +"YOL144W" 2 +"YAR027W" 4 +"YNL149C" 4 +"YOR099W" 2 +"YLR239C" 1 +"YDL160C-A" 3 +"YNL161W" 1 +"YPL132W" 1 +"YER088C" 1 +"YDR380W" 5 +"YCR093W" 2 +"YJL139C" 1 +"YAR031W" 3 +"YPL193W" 2 +"YER101C" 1 +"YNL242W" 1 +"YNL121C" 4 +"YNL113W" 2 +"YDR395W" 2 +"YMR004W" 1 +"YNR031C" 1 +"YAL064W-B" 3 +"YDR520C" 1 +"YDR217C" 2 +"YOL104C" 2 +"YIR031C" 3 +"YHR122W" 1 +"YPL141C" 3 +"YDR067C" 3 +"YDR184C" 2 +"YAR002C-A" 2 +"YDR524C" 4 +"YBL067C" 1 +"YDR428C" 4 +"YDR213W" 4 +"YGR089W" 1 +"YBR015C" 2 +"YDR036C" 2 +"YOL127W" 2 +"YKL161C" 5 +"YOR008C" 1 +"YMR179W" 1 +"YDR297W" 4 +"YOR298C-A" 5 +"YOR061W" 2 +"YIL112W" 1 +"YGL172W" 2 +"YFR025C" 2 +"YIR004W" 1 +"YPL138C" 1 +"YDR306C" 1 +"YKL183C-A" 3 +"YGL047W" 5 +"YPR162C" 2 +"YDR453C" 5 +"YKR081C" 2 +"YGR295C" 2 +"YOR213C" 4 +"YDR272W" 1 +"YDR273W" 1 +"YPR191W" 1 +"YJR046W" 2 +"YNL212W" 2 +"YDR237W" 1 +"YLR410W" 5 +"YGR223C" 1 +"YOL133W" 4 +"YPR151C" 1 +"YML032C" 2 +"YGL242C" 2 +"YBR267W" 2 +"YER100W" 2 +"YML096W" 2 +"YDR227W" 1 +"YDR525W-A" 1 +"YMR309C" 2 +"YMR315W" 4 +"YDR506C" 3 +"YDL159W-A" 3 +"YFR002W" 2 +"YHR060W" 2 +"YDL133W" 1 +"YIL090W" 2 +"YOR344C" 1 +"YLR077W" 1 +"YIR006C" 5 +"YGR204W" 1 +"YHL048C-A" 3 +"YGR087C" 1 +"YHL006C" 5 +"YPR001W" 1 +"YOL148C" 1 +"YNR047W" 1 +"YJR152W" 3 +"YDL182W" 1 +"YER150W" 5 +"YBR154C" 2 +"YDR081C" 2 +"YDR083W" 2 +"YAR008W" 2 +"YER066W" 1 +"YBR257W" 3 +"YGL190C" 1 +"YDL243C" 1 +"YMR180C" 3 +"YDL230W" 5 +"YAL053W" 1 +"YLR243W" 2 +"YJR010C-A" 3 +"YDR186C" 1 +"YLR436C" 1 +"YGR084C" 1 +"YKL011C" 2 +"YCR024C-A" 2 +"YDL095W" 2 +"YNL153C" 2 +"YNL270C" 3 +"YJL208C" 2 +"YKR052C" 4 +"YFL004W" 2 +"YNL240C" 3 +"YBR175W" 4 +"YCL027W" 2 +"YER024W" 1 +"YCR095C" 1 +"YMR187C" 1 +"YER163C" 4 +"YOR101W" 2 +"YLR244C" 2 +"YGL119W" 2 +"YNR037C" 1 +"YOL047C" 3 +"YPR025C" 3 +"YJR143C" 2 +"YLR172C" 2 +"YDL130W-A" 1 +"YBR165W" 1 +"YAL007C" 2 +"YGR211W" 2 +"YBL101W-A" 1 +"YLR120C" 5 +"YEL030W" 1 +"YDL145C" 4 +"YDR159W" 2 +"YPL260W" 5 +"YLR356W" 1 +"YER054C" 1 +"YMR023C" 1 +"YOL022C" 2 +"YKL174C" 1 +"YDR374C" 3 +"YJL052C-A" 3 +"YLR049C" 3 +"YMR263W" 3 +"YNL045W" 4 +"YHR067W" 1 +"YPR118W" 2 +"YNL169C" 2 +"YCR057C" 2 +"YHR143W-A" 2 +"YML025C" 1 +"YPL250C" 1 +"YOL043C" 3 +"YKL206C" 4 +"YBL001C" 5 +"YGR253C" 4 +"YLR291C" 2 +"YLR430W" 1 +"YEL054C" 2 +"YOL038C-A" 3 +"YIL091C" 2 +"YER146W" 2 +"YKL186C" 4 +"YEL047C" 2 +"YJL024C" 2 +"YML057W" 1 +"YNL199C" 2 +"YPR020W" 1 +"YHR181W" 4 +"YGL041C-B" 3 +"YNL252C" 1 +"YDR129C" 5 +"YHR186C" 1 +"YAL005C" 5 +"YGL092W" 2 +"YFL017C" 2 +"YOR385W" 5 +"YGL085W" 1 +"YAL029C" 2 +"YKL149C" 1 +"YFR001W" 2 +"YGL063W" 3 +"YBR016W" 5 +"YMR125W" 2 +"YDR519W" 2 +"YNL251C" 2 +"YJL131C" 1 +"YPL092W" 1 +"YPR165W" 2 +"YFL008W" 2 +"YKL205W" 2 +"YGL066W" 1 +"YGL235W" 3 +"YML026C" 2 +"YNL160W" 5 +"YDR052C" 1 +"YMR242C" 2 +"YKL072W" 1 +"YGL062W" 1 +"YBR293W" 5 +"YMR116C" 2 +"YDR141C" 2 +"YJL164C" 1 +"YNL068C" 2 +"YKR022C" 1 +"YLR204W" 1 +"YPR141C" 2 +"YOR365C" 3 +"YDR147W" 2 +"YLR323C" 1 +"YGR239C" 1 +"YER073W" 2 +"YIL013C" 1 +"YOR308C" 2 +"YMR196W" 5 +"YJL144W" 1 +"YJL123C" 1 +"YBL105C" 1 +"YBR111C" 4 +"YML022W" 2 +"YGR031W" 1 +"YKL124W" 1 +"YJL041W" 5 +"YDL109C" 3 +"YPR111W" 1 +"YPR060C" 2 +"YHR209W" 5 +"YAL058W" 2 +"YMR242W-A" 3 +"YHR189W" 3 +"YIR012W" 2 +"YMR055C" 5 +"YNL309W" 2 +"YBR085C-A" 1 +"YGR252W" 3 +"YKL084W" 4 +"YGL110C" 3 +"YMR170C" 1 +"YGR201C" 1 +"YGL175C" 3 +"YDR379C-A" 1 +"YPL043W" 2 +"YBL051C" 2 +"YGL185C" 3 +"YOL053W" 5 +"YOR336W" 1 +"YNR050C" 2 +"YBL101C" 1 +"YDR383C" 5 +"YIL029C" 3 +"YLR270W" 5 +"YCR012W" 2 +"YDR346C" 2 +"YIL070C" 1 +"YDR246W-A" 3 +"YJR025C" 3 +"YKR010C" 2 +"YLR150W" 2 +"YKL091C" 1 +"YOR151C" 2 +"YKR016W" 1 +"YMR075W" 1 +"YKL185W" 3 +"YJR045C" 5 +"YIR010W" 3 +"YOR128C" 2 +"YJR022W" 2 +"YDR432W" 4 +"YDL235C" 2 +"YGR233C" 2 +"YNL101W" 1 +"YLR337C" 2 +"YDR261C-D" 2 +"YEL011W" 5 +"YLR321C" 3 +"YJR078W" 1 +"YDR247W" 1 +"YDL248W" 2 +"YFL017W-A" 2 +"YFL061W" 3 +"YLR368W" 1 +"YDR418W" 2 +"YHL042W" 3 +"YJR138W" 1 +"YCL063W" 2 +"YPL196W" 1 +"YJR055W" 2 +"YGL090W" 3 +"YLR016C" 1 +"YBL016W" 2 +"YBR255W" 1 +"YAL002W" 1 +"YDR505C" 1 +"YLR147C" 2 +"YIL110W" 2 +"YMR005W" 4 +"YGR274C" 1 +"YML060W" 2 +"YIL083C" 4 +"YJR110W" 1 +"YNL166C" 3 +"YGR028W" 5 +"YBR172C" 2 +"YLR429W" 2 +"YMR083W" 2 +"YER148W" 4 +"YFL064C" 3 +"YBR040W" 3 +"YDR155C" 2 +"YNL033W" 3 +"YDR244W" 5 +"YKL178C" 2 +"YGR033C" 4 +"YBL101W-B" 4 +"YHR030C" 1 +"YGR026W" 4 +"YLR371W" 1 +"YDR352W" 4 +"YDL175C" 3 +"YKR031C" 1 +"YGR118W" 2 +"YGR015C" 1 +"YBL014C" 2 +"YOR073W" 3 +"YDR323C" 1 +"YKL018C-A" 1 +"YGR217W" 1 +"YLR152C" 1 +"YJR002W" 2 +"YKL082C" 2 +"YKL133C" 1 +"YML030W" 1 +"YNL051W" 4 +"YER105C" 2 +"YOR059C" 1 +"YGL128C" 1 +"YKR071C" 2 +"YLR297W" 1 +"YPR169W" 2 +"YLR259C" 5 +"YCR102C" 5 +"YNR058W" 1 +"YOR098C" 2 +"YKL148C" 1 +"YFL023W" 2 +"YER178W" 4 +"YLR319C" 2 +"YBL037W" 2 +"YBR048W" 2 +"YIL104C" 2 +"YKL119C" 4 +"YGL015C" 3 +"YMR063W" 3 +"YDR178W" 1 +"YMR208W" 2 +"YDL066W" 3 +"YDR202C" 1 +"YPL212C" 2 +"YAL026C" 2 +"YJL137C" 1 +"YJR039W" 1 +"YKL163W" 1 +"YHR201C" 2 +"YLR179C" 2 +"YGL136C" 1 +"YGR232W" 4 +"YEL016C" 2 +"YNL002C" 2 +"YLR422W" 1 +"YIL014W" 2 +"YFL005W" 4 +"YPR122W" 1 +"YGL225W" 2 +"YJR118C" 2 +"YML012W" 2 +"YJL189W" 2 +"YOR019W" 1 +"YOR250C" 2 +"YKL067W" 4 +"YMR244C-A" 1 +"YIR037W" 5 +"YDL088C" 2 +"YEL034W" 4 +"YGR216C" 2 +"YLR009W" 2 +"YPR091C" 2 +"YJR097W" 2 +"YDR285W" 5 +"YMR251W-A" 4 +"YHL009C" 5 +"YER177W" 4 +"YER061C" 5 +"YLR225C" 4 +"YHR018C" 1 +"YOR038C" 4 +"YHR207C" 3 +"YFL054C" 5 +"YLR388W" 2 +"YGL160W" 1 +"YML016C" 2 +"YAL016C-B" 3 +"YLR207W" 3 +"YLR415C" 3 +"YHR103W" 2 +"YGR264C" 2 +"YPL048W" 5 +"YOL018C" 1 +"YBR168W" 4 +"YJR059W" 1 +"YBL039W-A" 1 +"YDR414C" 2 +"YER016W" 2 +"YPL263C" 2 +"YLR056W" 2 +"YML070W" 5 +"YDR470C" 1 +"YDL200C" 3 +"YGL229C" 5 +"YLR246W" 1 +"YBR223C" 3 +"YDR270W" 2 +"YBR235W" 1 +"YNL182C" 2 +"YGR175C" 2 +"YKR026C" 2 +"YAL064C-A" 2 +"YKL070W" 3 +"YHR126C" 3 +"YJR075W" 2 +"YLR108C" 4 +"YML063W" 2 +"YMR091C" 3 +"YJL197W" 1 +"YJL048C" 1 +"YNL016W" 2 +"YLL039C" 1 +"YJR054W" 2 +"YOL140W" 1 +"YPL051W" 3 +"YPL121C" 3 +"YEL058W" 4 +"YAL015C" 1 +"YIL057C" 1 +"YDR211W" 2 +"YLR154W-E" 1 +"YML118W" 1 +"YBR097W" 1 +"YKL060C" 2 +"YOL110W" 1 +"YMR079W" 2 +"YDR485C" 3 +"YLL029W" 1 +"YNL044W" 4 +"YPR073C" 2 +"YAL031C" 1 +"YAL023C" 2 +"YLR298C" 3 +"YGL257C" 2 +"YIL034C" 5 +"YBR228W" 1 +"YCL035C" 4 +"YEL020C" 1 +"YLR388W.1" 2 +"YOL006C" 1 +"YLR175W" 2 +"YOR036W" 1 +"YDL189W" 2 +"YLR251W" 1 +"YPL221W" 1 +"YOR054C" 1 +"YIR036C" 5 +"YNL189W" 4 +"YDL181W" 1 +"YJR111C" 4 +"YBL079W" 2 +"YOR035C" 1 +"YNL224C" 2 +"YHR054C" 2 +"YKR094C" 2 +"YGL065C" 3 +"YPR109W" 1 +"YDL093W" 1 +"YJR124C" 2 +"YDL225W" 3 +"YLR242C" 2 +"YOR195W" 2 +"YLR148W" 2 +"YJR053W" 3 +"YPR128C" 2 +"YBR102C" 1 +"YDL077C" 2 +"YDR276C" 4 +"YGL101W" 4 +"YGR103W" 2 +"YEL007W" 2 +"YDL185W" 2 +"YMR096W" 1 +"YGR133W" 1 +"YJL080C" 2 +"YDR096W" 1 +"YKL062W" 3 +"YLR342W" 2 +"YML108W" 2 +"YAL064W" 5 +"YCL005W" 4 +"YPL128C" 2 +"YAR066W" 2 +"YHL043W" 3 +"YER028C" 3 +"YEL050C" 1 +"YDR079C-A" 2 +"YDR412W" 2 +"YER085C" 3 +"YAL062W" 1 +"YMR230W" 2 +"YDL064W" 2 +"YBR019C" 5 +"YKL164C" 3 +"YBR067C" 1 +"YJR068W" 4 +"YER052C" 2 +"YNL047C" 1 +"YLR199C" 2 +"YJR094C" 3 +"YGR117C" 1 +"YKR083C" 2 +"YOR332W" 4 +"YBR096W" 2 +"YDR504C" 1 +"YAR020C" 1 +"YHR121W" 1 +"YDR424C" 1 +"YGR001C" 2 +"YBR089C-A" 1 +"YDR030C" 1 +"YGR068C" 2 +"YER166W" 2 +"YNL087W" 2 +"YCR101C" 2 +"YMR067C" 1 +"YDL069C" 2 +"YOR370C" 2 +"YPL192C" 2 +"YKR041W" 2 +"YBR094W" 2 +"YLR404W" 2 +"YGR188C" 2 +"YLR253W" 1 +"YPR145W" 2 +"YHR188C" 2 +"YLR351C" 2 +"YPL084W" 2 +"YDR405W" 1 +"YEL065W" 2 +"YNL005C" 1 +"YEL046C" 2 +"YJR149W" 1 +"YLR210W" 2 +"YLR073C" 2 +"YDR429C" 2 +"YNL314W" 1 +"YIL041W" 4 +"YLR344W" 2 +"YJR112W-A" 2 +"YLR312C" 1 +"YHR039C-A" 2 +"YEL017W" 2 +"YDR018C" 1 +"YIL046W" 1 +"YDR222W" 4 +"YBL082C" 2 +"YOR020C" 4 +"YPL125W" 1 +"YIL017C" 1 +"YPR166C" 3 +"YBR106W" 2 +"YFL018C" 5 +"YBR245C" 2 +"YHR089C" 2 +"YBR286W" 2 +"YOR394W" 3 +"YFL009W" 2 +"YJL154C" 2 +"YOL117W" 1 +"YIL105C" 1 +"YNL015W" 1 +"YGL023C" 2 +"YJL163C" 1 +"YPL016W" 2 +"YKR067W" 1 +"YDR086C" 2 +"YKL193C" 1 +"YOL152W" 3 +"YCL050C" 2 +"YGL186C" 1 +"YML098W" 1 +"YNL023C" 1 +"YKL138C-A" 3 +"YHR167W" 2 +"YIL140W" 2 +"YNL108C" 4 +"YKL080W" 2 +"YLR397C" 2 +"YOL023W" 1 +"YNL062C" 2 +"YHL035C" 3 +"YPR032W" 3 +"YLR213C" 3 +"YMR224C" 1 +"YMR164C" 1 +"YNL067W" 2 +"YLR245C" 5 +"YBL111C" 2 +"YHR176W" 1 +"YDR448W" 1 +"YLR048W" 2 +"YDR369C" 1 +"YCL045C" 4 +"YLR262C-A" 4 +"YPR084W" 1 +"YPR086W" 1 +"YBL008W-A" 3 +"YHR050W" 4 +"YOR083W" 3 +"YDL054C" 1 +"YGR146C" 1 +"YGL250W" 1 +"YJL136W-A" 3 +"YKL146W" 1 +"YOL130W" 2 +"YBL078C" 1 +"YLR226W" 1 +"YNL306W" 1 +"YOR056C" 2 +"YLR285W" 2 +"YER037W" 5 +"YBR262C" 1 +"YPL170W" 1 +"YKR066C" 5 +"YDR477W" 2 +"YCR065W" 2 +"YJR135W-A" 1 +"YPL083C" 2 +"YNL206C" 3 +"YLL004W" 2 +"YML101C" 2 +"YGR090W" 2 +"YOL138C" 1 +"YOR381W-A" 2 +"YIL030C" 4 +"YKR090W" 2 +"YPL006W" 1 +"YOL155C" 5 +"YDR499W" 1 +"YGR159C" 2 +"YGL131C" 5 +"YFL013C" 1 +"YBL034C" 2 +"YDR169C" 1 +"YKR063C" 2 +"YDL201W" 2 +"YMR014W" 2 +"YGR199W" 2 +"YFR022W" 3 +"YFR009W" 2 +"YIR033W" 1 +"YBR173C" 4 +"YOR120W" 5 +"YDR315C" 2 +"YKL203C" 1 +"YKL172W" 2 +"YAL028W" 1 +"YJR008W" 1 +"YBR033W" 1 +"YMR319C" 4 +"YOL017W" 2 +"YNL249C" 1 +"YKL204W" 1 +"YBL072C.1" 2 +"YMR053C" 1 +"YKR100C" 4 +"YOL128C" 1 +"YPL042C" 3 +"YNR012W" 2 +"YDR291W" 1 +"YGR288W" 3 +"YOR010C" 3 +"YDR012W" 2 +"YGL022W" 2 +"YMR095C" 1 +"YNR016C" 2 +"YBL013W" 3 +"YPR013C" 1 +"YGL198W" 4 +"YLL048C" 2 +"YNL190W" 2 +"YMR171C" 1 +"YBL024W" 2 +"YJL019W" 2 +"YBL097W" 3 +"YJL055W" 4 +"YHR003C" 2 +"YLL006W-A" 3 +"YOR034C" 3 +"YNR034W" 5 +"YLL052C" 1 +"YAL054C" 1 +"YNR057C" 3 +"YHR156C" 1 +"YDR236C" 2 +"YLR352W" 1 +"YDR117C" 1 +"YNR011C" 2 +"YLR098C" 1 +"YDR372C" 4 +"YOR147W" 1 +"YBR269C" 1 +"YHR199C-A" 3 +"YOR168W" 2 +"YNL001W" 2 +"YFR005C" 2 +"YOR316C-A" 2 +"YBR230W-A" 1 +"YEL052W" 5 +"YOR312C" 2 +"YEL055C" 2 +"YIL046W-A" 3 +"YDL213C" 2 +"YJR013W" 2 +"YBR062C" 1 +"YGR052W" 5 +"YBR213W" 1 +"YFR008W" 1 +"YOR172W" 1 +"YKR077W" 4 +"YDR356W" 1 +"YJL187C" 2 +"YPL168W" 1 +"YPR045C" 3 +"YMR219W" 1 +"YJL206C" 1 +"YJL057C" 5 +"YNL178W" 2 +"YBR164C" 2 +"YGL004C" 2 +"YDR430C" 1 +"YHR154W" 2 +"YCR099C" 3 +"YBR239C" 1 +"YDR219C" 1 +"YPL278C" 1 +"YOR189W" 3 +"YOL151W" 5 +"YLR341W" 3 +"YMR205C" 2 +"YIL092W" 1 +"YMR236W" 2 +"YLL013C" 3 +"YPL005W" 1 +"YER109C" 3 +"YBR010W" 4 +"YIL108W" 2 +"YLR418C" 2 +"YDR512C" 2 +"YJR113C" 1 +"YGR041W" 2 +"YCR048W" 2 +"YJL008C" 5 +"YPR071W" 2 +"YLR055C" 2 +"YNL196C" 3 +"YMR158C-A" 2 +"YGL215W" 2 +"YEL029C" 4 +"YER154W" 2 +"YDL067C" 1 +"YOL019W" 2 +"YLR383W" 1 +"YKR027W" 4 +"YGL124C" 1 +"YER046W" 1 +"YIL169C" 5 +"YBR003W" 1 +"YMR304W" 1 +"YDR319C" 1 +"YDL117W" 2 +"YPR156C" 5 +"YOR306C" 4 +"YGR281W" 1 +"YGR262C" 2 +"YOR040W" 1 +"YDR165W" 2 +"YMR229C" 2 +"YMR058W" 2 +"YIL018W" 2 +"YPL105C" 2 +"YPL208W" 2 +"YBR081C" 2 +"YLR081W" 5 +"YBR183W" 1 +"YNL132W" 2 +"YPL214C" 1 +"YKL130C" 3 +"YBL005W-A" 5 +"YNR035C" 4 +"YMR077C" 3 +"YPL234C" 2 +"YKR034W" 3 +"YMR264W" 4 +"YPL032C" 2 +"YHR037W" 5 +"YML080W" 2 +"YER095W" 2 +"YLL043W" 4 +"YBR243C" 2 +"YDR179W-A" 1 +"YGR283C" 2 +"YNL146C-A" 3 +"YPL152W" 5 +"YNL229C" 4 +"YLL002W" 2 +"YOR126C" 1 +"YMR089C" 5 +"YPL054W" 5 +"YOR291W" 1 +"YPR190C" 2 +"YCL057W" 5 +"YDR038C.1" 2 +"YOR002W" 2 +"YJL038C" 3 +"YGR109W-A" 3 +"YLR069C" 1 +"YNR010W" 3 +"YNL063W" 1 +"YLR295C" 1 +"YDR034C" 1 +"YOL010W" 2 +"YFL026W" 2 +"YOR359W" 2 +"YDR261W-B" 5 +"YNL250W" 3 +"YJL096W" 1 +"YJL079C" 1 +"YDR367W" 2 +"YDR307W" 1 +"YGL162W" 3 +"YGL040C" 2 +"YPL173W" 1 +"YJL124C" 2 +"YFR051C" 2 +"YGR227W" 4 +"YIL016W" 3 +"YBR055C" 1 +"YBL107C" 1 +"YML078W" 5 +"YOL123W" 2 +"YIR019C" 3 +"YMR106C" 3 +"YDL170W" 1 +"YOR297C" 2 +"YBL060W" 1 +"YLR200W" 2 +"YDR034C-A" 3 +"YMR122W-A" 2 +"YOR278W" 3 +"YAL027W" 1 +"YBR259W" 2 +"YNL244C" 2 +"YHR077C" 1 +"YNL261W" 4 +"YNR052C" 2 +"YBR167C" 2 +"YGR005C" 4 +"YJL099W" 2 +"YGL164C" 3 +"YOR292C" 5 +"YDR437W" 3 +"YPR047W" 3 +"YMR172W" 2 +"YOL059W" 2 +"YJL033W" 2 +"YGL212W" 3 +"YER079W" 1 +"YLR460C" 5 +"YHL022C" 3 +"YER180C" 1 +"YIR002C" 1 +"YBR129C" 1 +"YDR130C" 3 +"YKL209C" 2 +"YGR008C" 5 +"YMR144W" 2 +"YHR001W-A" 1 +"YDR060W" 2 +"YIL079C" 2 +"YMR140W" 3 +"YOL069W" 3 +"YPL118W" 1 +"YOR384W" 5 +"YDR341C" 2 +"YBL015W" 1 +"YGR116W" 2 +"YBR198C" 2 +"YHL040C" 2 +"YKL212W" 2 +"YOR363C" 1 +"YGL163C" 5 +"YJL014W" 2 +"YDL035C" 2 +"YJR004C" 2 +"YNL090W" 2 +"YPR134W" 1 +"YPR110C" 2 +"YLR014C" 2 +"YHL012W" 3 +"YGR034W" 2 +"YHR214C-E" 3 +"YNL106C" 1 +"YEL026W" 2 +"YJR017C" 5 +"YLR205C" 2 +"YNL293W" 1 +"YKL024C" 2 +"YPR070W" 2 +"YPR103W" 5 +"YPL103C" 1 +"YBL088C" 3 +"YFL056C" 3 +"YEL063C" 2 +"YBR057C" 1 +"YFL041W" 2 +"YOL003C" 4 +"YKL004W" 4 +"YJR073C" 3 +"YBR037C" 3 +"YJL076W" 2 +"YFR044C" 2 +"YKR018C" 5 +"YOL041C" 2 +"YMR105W-A" 3 +"YGR202C" 2 +"YPR066W" 5 +"YER144C" 1 +"YDR032C" 5 +"YBR137W" 4 +"YJL115W" 2 +"YPL060W" 1 +"YER165W" 2 +"YOL027C" 1 +"YFR011C" 1 +"YNL142W" 1 +"YKL100C" 2 +"YMR192W" 2 +"YPL024W" 1 +"YBR282W" 1 +"YLL066W-B" 3 +"YML086C" 2 +"YKL201C" 1 +"YJR069C" 2 +"YMR133W" 3 +"YIL117C" 5 +"YEL066W" 2 +"YLL032C" 2 +"YFR018C" 5 +"YER169W" 3 +"YJL072C" 1 +"YML087C" 1 +"YLR382C" 1 +"YGL073W" 1 +"YIL164C" 1 +"YDR398W" 2 +"YOR221C" 1 +"YPR056W" 3 +"YPL077C" 1 +"YAR007C" 1 +"YDR150W" 5 +"YFR017C" 1 +"YMR147W" 2 +"YOR183W" 3 +"YER182W" 1 +"YER014W" 5 +"YNL298W" 4 +"YLR367W" 2 +"YDL137W" 5 +"YDR376W" 1 +"YML129C" 1 +"YPL183W-A" 1 +"YPL106C" 2 +"YLR037C.1" 1 +"YFR015C" 1 +"YGR263C" 4 +"YEL064C" 1 +"YLR094C" 2 +"YHR171W" 1 +"YDL215C" 1 +"YDR101C" 2 +"YER162C" 1 +"YML115C" 2 +"YOR044W" 1 +"YLR087C" 2 +"YDL186W" 3 +"YOR086C" 4 +"YMR185W" 3 +"YJR119C" 1 +"YLR423C" 3 +"YKL013C" 5 +"YJL044C" 4 +"YBR004C" 2 +"YBR049C" 1 +"YER063W" 3 +"YOL080C" 2 +"YJL092W" 4 +"YBR230C" 1 +"YOR376W-A" 3 +"YNL269W" 3 +"YJR010W" 1 +"YOR012W" 1 +"YOL081W" 5 +"YLR173W" 3 +"YOR214C" 3 +"YOR148C" 4 +"YDR471W" 2 +"YDR259C" 3 +"YNL098C" 5 +"YLR385C" 3 +"YCR005C" 1 +"YOL002C" 1 +"YDR514C" 2 +"YGR112W" 5 +"YBR250W" 1 +"YMR281W" 2 +"YDL128W" 4 +"YOR205C" 3 +"YCR037C" 2 +"YKR055W" 1 +"YCR028C-A" 2 +"YGL005C" 4 +"YDR300C" 2 +"YDL138W" 1 +"YMR107W" 1 +"YOR381W" 5 +"YJR049C" 2 +"YJR048W" 1 +"YBL041W" 4 +"YDL161W" 3 +"YMR284W" 1 +"YBL033C" 1 +"YGL224C" 2 +"YNL034W" 3 +"YAL036C" 2 +"YOL143C" 4 +"YOR068C" 3 +"YDR508C" 2 +"YPR104C" 1 +"YKL096W-A" 2 +"YGL197W" 1 +"YJL046W" 2 +"YGL082W" 4 +"YPR021C" 1 +"YLR004C" 2 +"YBL007C" 2 +"YDR071C" 4 +"YMR199W" 2 +"YBL020W" 2 +"YBR298C" 1 +"YDR313C" 1 +"YIL074C" 1 +"YOR046C" 2 +"YNL175C" 2 +"YJL141C" 5 +"YLR307W" 1 +"YJR060W" 1 +"YPL184C" 2 +"YPL240C" 5 +"YJL212C" 4 +"YNR013C" 2 +"YCL001W-A" 2 +"YGR082W" 2 +"YGL050W" 4 +"YDL004W" 1 +"YOL009C" 1 +"YNL283C" 2 +"YPL030W" 2 +"YIL135C" 1 +"YHR185C" 3 +"YOL026C" 4 +"YBR202W" 1 +"YMR165C" 1 +"YHL025W" 2 +"YLR440C" 2 +"YDL099W" 4 +"YDR046C" 5 +"YAL068C" 4 +"YDL030W" 2 +"YKL114C" 2 +"YDL217C" 1 +"YDL240W" 2 +"YDL130W" 2 +"YBR021W" 2 +"YOL038W" 5 +"YDR463W" 2 +"YPR180W" 3 +"YCL056C" 4 +"YBR146W" 4 +"YKR065C" 5 +"YEL060C" 1 +"YGR066C" 3 +"YFL033C" 1 +"YHR034C" 1 +"YHR043C.1" 2 +"YOR115C" 4 +"YOR004W" 2 +"YOR009W" 3 +"YLR407W" 2 +"YNL154C" 2 +"YPR176C" 2 +"YGR273C" 3 +"YER042W" 4 +"YJL012C" 2 +"YOR093C" 1 +"YGR086C" 4 +"YBR105C" 1 +"YMR261C" 4 +"YJL103C" 1 +"YLR369W" 1 +"YIL173W" 1 +"YPL207W" 2 +"YLR446W" 1 +"YLR394W" 1 +"YBR199W" 5 +"YER055C" 2 +"YLR008C" 2 +"YIR016W" 1 +"YOL084W" 5 +"YMR118C" 1 +"YIL053W" 2 +"YOR145C" 2 +"YPL239W" 2 +"YNL267W" 1 +"YJR116W" 4 +"YMR153W" 2 +"YCL048W" 3 +"YOR007C" 4 +"YOR206W" 2 +"YEL056W" 2 +"YBL006C" 4 +"YNL186W" 4 +"YBR060C" 2 +"YFR055W" 4 +"YFR014C" 1 +"YGR184C" 1 +"YKL159C" 1 +"YFL055W" 3 +"YKR028W" 2 +"YHR195W" 5 +"YIL064W" 2 +"YNL024C-A" 2 +"YNL243W" 2 +"YHL036W" 1 +"YDR456W" 1 +"YLR355C" 2 +"YDL233W" 1 +"YDL194W" 1 +"YBL102W" 4 +"YBR249C" 2 +"YMR215W" 2 +"YNL082W" 2 +"YHR022C-A" 3 +"YHL029C" 1 +"YHR081W" 2 +"YER038C" 3 +"YKL106C-A" 3 +"YOR060C" 3 +"YGR032W" 1 +"YDR497C" 3 +"YPR108W" 5 +"YIL097W" 1 +"YHR101C" 1 +"YBR114W" 1 +"YJR098C" 5 +"YNR036C" 4 +"YNL065W" 4 +"YGL007C-A" 5 +"YGR076C" 1 +"YBR244W" 4 +"YLR390W-A" 2 +"YDL061C.1" 2 +"YMR193W" 1 +"YBL009W" 2 +"YHL033C" 2 +"YNL066W" 2 +"YDL247W" 3 +"YMR114C" 5 +"YKR060W" 2 +"YBR233W" 2 +"YLR193C" 1 +"YJR035W" 1 +"YPL175W" 2 +"YOL076W" 2 +"YML048W" 2 +"YMR016C" 2 +"YDR057W" 3 +"YNL177C" 1 +"YKL008C" 4 +"YLR132C" 1 +"YBR132C" 1 +"YLR354C" 2 +"YLR141W" 2 +"YOR158W" 1 +"YPL023C" 2 +"YNR022C" 1 +"YDL024C" 1 +"YDR110W" 2 +"YLR054C" 3 +"YOR303W" 1 +"YDL085C-A" 4 +"YDL127W" 2 +"YDL065C" 1 +"YAL012W" 2 +"YOL131W" 1 +"YNL077W" 1 +"YOR033C" 3 +"YNL119W" 2 +"YNL180C" 4 +"YLL019C" 1 +"YBL063W" 1 +"YJR016C" 2 +"YDR228C" 3 +"YEL001C" 2 +"YLR070C" 1 +"YLR099W-A" 1 +"YIL134C-A" 3 +"YCL049C" 1 +"YBR091C" 2 +"YDR511W" 1 +"YLR395C" 1 +"YPR067W" 4 +"YOR192C" 3 +"YJR021C" 1 +"YDR371W" 2 +"YNL128W" 3 +"YBR066C" 1 +"YOR193W" 1 +"YIL055C" 1 +"YKL086W" 1 +"YDR108W" 1 +"YIL127C" 2 +"YNR029C" 3 +"YLL008W" 2 +"YDL101C" 2 +"YJL071W" 1 +"YGR193C" 1 +"YDR105C" 1 +"YPL159C" 1 +"YDL083C" 2 +"YGR256W" 5 +"YCR066W" 2 +"YCR087C-A" 2 +"YNL093W" 1 +"YDL053C" 4 +"YOL001W" 1 +"YHR082C" 2 +"YJL219W" 3 +"YCL061C" 2 +"YLR353W" 3 +"YLR273C" 1 +"YJL095W" 1 +"YBR203W" 1 +"YNR028W" 3 +"YPR004C" 5 +"YDL007W" 5 +"YMR066W" 1 +"YPL210C" 2 +"YLR445W" 3 +"YGR271W" 1 +"YJL145W" 2 +"YJL091C" 2 +"YFL037W" 2 +"YHR008C" 1 +"YGR145W" 2 +"YIL061C" 3 +"YGL258W" 4 +"YMR168C" 1 +"YGR045C" 1 +"YDL245C" 3 +"YLL066W-B.1" 3 +"YNL155W" 5 +"YJL111W" 2 +"YGR019W" 5 +"YIL107C" 1 +"YIR027C" 3 +"YKR078W" 2 +"YBL066C" 1 +"YJL050W" 2 +"YMR175W" 1 +"YOL158C" 2 +"YDL205C" 2 +"YGR055W" 2 +"YPL190C" 1 +"YLR362W" 1 +"YPR185W" 1 +"YLR002C" 2 +"YNL268W" 3 +"YPL124W" 2 +"YDR098C" 2 +"YLR357W" 1 +"YGL226C-A" 2 +"YDR275W" 1 +"YBR271W" 2 +"YIL047C" 4 +"YMR031C" 5 +"YLR345W" 1 +"YBL091C-A" 5 +"YER078W-A" 3 +"YDL121C" 2 +"YCR030C" 2 +"YOR097C" 1 +"YMR303C" 1 +"YPL237W" 2 +"YJR095W" 1 +"YCL069W" 3 +"YGL129C" 1 +"YMR278W" 1 +"YOL126C" 5 +"YFR021W" 1 +"YEL019C" 3 +"YDR123C" 1 +"YJL178C" 4 +"YPR094W" 1 +"YDL239C" 1 +"YOR262W" 4 +"YDR017C" 1 +"YML043C" 2 +"YJR001W" 2 +"YDR468C" 4 +"YOL025W" 1 +"YDR194W-A" 3 +"YGL112C" 2 +"YNL139C" 1 +"YPL244C" 2 +"YMR266W" 2 +"YOL072W" 2 +"YPL228W" 3 +"YMR012W" 2 +"YPL155C" 3 +"YGR030C" 1 +"YIL003W" 1 +"YOL092W" 2 +"YJL047C" 2 +"YBR005W" 1 +"YOR388C" 1 +"YNR032W" 5 +"YDR148C" 1 +"YNL195C" 5 +"YPL140C" 1 +"YAR015W" 2 +"YEL039C" 1 +"YJR065C" 5 +"YOL044W" 1 +"YDR309C" 2 +"YDR310C" 2 +"YNL136W" 1 +"YPL009C" 2 +"YMR074C" 2 +"YPL003W" 5 +"YLR386W" 2 +"YNL219C" 2 +"YPL091W" 4 +"YNL304W" 1 +"YMR029C" 1 +"YMR271C" 1 +"YNL074C" 1 +"YER027C" 2 +"YOR122C" 4 +"YGR111W" 4 +"YKL096C-B" 2 +"YPL021W" 3 +"YAR033W.1" 5 +"YMR307W" 2 +"YLR221C" 2 +"YLR459W" 2 +"YNL006W" 4 +"YNL330C" 1 +"YLR448W" 2 +"YNR054C" 2 +"YLR028C" 5 +"YNL144C" 1 +"YBL026W" 4 +"YGR002C" 3 +"YCR061W" 1 +"YHR066W" 2 +"YOL045W" 1 +"YPL177C" 1 +"YGR247W" 5 +"YGR098C" 1 +"YPL137C" 2 +"YCL017C" 1 +"YGL141W" 1 +"YPR171W" 2 +"YML028W" 4 +"YKR082W" 2 +"YIR035C" 2 +"YHL034C" 5 +"YNL125C" 1 +"YKR074W" 4 +"YMR290C" 2 +"YDR221W" 3 +"YCL057C-A" 1 +"YGR012W" 2 +"YFR042W" 2 +"YKL214C" 2 +"YMR272W-B" 2 +"YGL061C" 2 +"YDR183W" 3 +"YMR006C" 1 +"YJR072C" 2 +"YGR079W" 2 +"YGR059W" 1 +"YLR027C" 2 +"YIR025W" 1 +"YFR012W-A" 1 +"YLR011W" 3 +"YNL185C" 1 +"YMR121C" 4 +"YER014C-A" 3 +"YBL084C" 1 +"YOR387C" 4 +"YNL327W" 2 +"YGL054C" 2 +"YDR172W" 2 +"YNL273W" 2 +"YCR060W" 2 +"YML024W" 2 +"YNL209W" 2 +"YDR339C" 2 +"YER122C" 2 +"YLR348C" 2 +"YDL142C" 1 +"YDR054C" 4 +"YAL022C" 2 +"YBR218C" 2 +"YLR424W" 2 +"YER116C" 1 +"YEL009C" 4 +"YDR303C" 3 +"YDR457W" 2 +"YDL231C" 2 +"YPL217C" 2 +"YDR436W" 1 +"YHL002W" 1 +"YIR032C" 3 +"YIR029W" 1 +"YHR135C" 2 +"YJL102W" 5 +"YER009W" 2 +"YPR108W-A" 3 +"YJR091C" 1 +"YDL195W" 2 +"YOR167C" 2 +"YOR310C" 2 +"YMR305C" 2 +"YOL048C" 5 +"YJL155C" 5 +"YDR326C" 2 +"YOR326W" 2 +"YDR065W" 1 +"YGR254W" 5 +"YLR384C" 2 +"YGR172C" 2 +"YKL009W" 2 +"YPL188W" 1 +"YDR185C" 5 +"YOL052C-A" 5 +"YKL129C" 1 +"YHL026C" 3 +"YJR126C" 2 +"YDR388W" 5 +"YLR392C" 1 +"YNR041C" 2 +"YER002W" 2 +"YKL001C" 1 +"YJL039C" 2 +"YGL187C" 1 +"YPL143W" 2 +"YNL130C" 2 +"YGR209C" 4 +"YDR158W" 2 +"YML042W" 1 +"YDL084W" 2 +"YOR339C" 3 +"YPR101W" 3 +"YOR081C" 1 +"YER020W" 5 +"YGL008C" 2 +"YNR075C-A" 3 +"YLR177W" 1 +"YDR106W" 3 +"YDR423C" 1 +"YNL052W" 1 +"YPR035W" 2 +"YBL019W" 1 +"YCR003W" 1 +"YPL279C" 2 +"YBR297W" 1 +"YDR027C" 2 +"YDR131C" 1 +"YJL161W" 1 +"YMR277W" 2 +"YMR110C" 1 +"YGR171C" 1 +"YPL149W" 4 +"YGR240C" 2 +"YLR276C" 2 +"YBL035C" 2 +"YJL181W" 1 +"YBR090C" 3 +"YNL236W" 2 +"YPR186C" 2 +"YDR283C" 1 +"YDR089W" 2 +"YLR065C" 2 +"YOL039W" 2 +"YOR154W" 2 +"YOR253W" 2 +"YER007W" 1 +"YGL134W" 1 +"YNL026W" 2 +"YLR043C" 2 +"YJL066C" 1 +"YLL024C" 2 +"YOL107W" 2 +"YDR248C" 1 +"YDR265W" 5 +"YBR299W" 1 +"YMR250W" 5 +"YHR213W-A" 3 +"YLR033W" 3 +"YPR201W" 3 +"YMR084W" 3 +"YNR026C" 2 +"YKL099C" 2 +"YOR357C" 2 +"YGR129W" 3 +"YOR018W" 1 +"YMR214W" 2 +"YDL243C.1" 5 +"YNR033W" 1 +"YJL183W" 2 +"YOR110W" 1 +"YOL108C" 1 +"YPL277C" 3 +"YBL056W" 4 +"YDR073W" 2 +"YGR226C" 3 +"YPL249C-A" 2 +"YNR019W" 3 +"YBR207W" 2 +"YGR062C" 1 +"YNL130C-A" 3 +"YGR248W" 5 +"YLR196W" 2 +"YIL113W" 1 +"YLR135W" 1 +"YMR188C" 1 +"YER019W" 3 +"YHR117W" 3 +"YOL060C" 1 +"YGL018C" 1 +"YNL281W" 2 +"YPL031C" 1 +"YLR034C" 2 +"YLR145W" 2 +"YLL026W" 1 +"YFR007W" 3 +"YGL071W" 3 +"YGR126W" 3 +"YNL201C" 2 +"YBR281C" 2 +"YHR202W" 1 +"YKR070W" 3 +"YOR070C" 1 +"YOR313C" 3 +"YGR286C" 1 +"YKL025C" 2 +"YCL047C" 4 +"YML026C.1" 2 +"YGL173C" 2 +"YLR057W" 3 +"YIL078W" 2 +"YBR036C" 5 +"YOR350C" 1 +"YPL150W" 1 +"YIL154C" 3 +"YNL200C" 5 +"YKL077W" 2 +"YDR320C-A" 1 +"YMR194W" 2 +"YOL146W" 3 +"YER003C" 2 +"YKL126W" 1 +"YMR182W-A" 3 +"YKL094W" 5 +"YLL036C" 2 +"YAL020C" 1 +"YMR302C" 1 +"YDR003W-A" 1 +"YKR036C" 2 +"YMR126C" 1 +"YOR354C" 1 +"YGL203C" 3 +"YNL100W" 1 +"YHR020W" 2 +"YLR023C" 1 +"YHR161C" 1 +"YDL160C" 2 +"YLR324W" 1 +"YBR171W" 2 +"YGL049C" 1 +"YBR103W" 1 +"YBR196C-B" 3 +"YPL108W" 2 +"YKR046C" 1 +"YHR012W" 2 +"YJL026W" 2 +"YGL207W" 2 +"YOR066W" 1 +"YPL015C" 5 +"YIL093C" 1 +"YER045C" 1 +"YML076C" 1 +"YER161C" 3 +"YJL090C" 1 +"YBR088C" 2 +"YNL308C" 2 +"YDL063C" 2 +"YDR533C" 5 +"YLR168C" 1 +"YDL214C" 1 +"YPR082C" 4 +"YKR080W" 2 +"YOR261C" 5 +"YPL167C" 1 +"YBR104W" 4 +"YER012W" 5 +"YOL136C" 4 +"YDL234C" 1 +"YIR018W" 1 +"YGR162W" 2 +"YGL029W" 2 +"YNL124W" 2 +"YBR247C" 2 +"YDR330W" 5 +"YNL221C" 2 +"YLR421C" 4 +"YML097C" 2 +"YBR241C" 1 +"YPR098C" 5 +"YGR120C" 4 +"YIL116W" 1 +"YPR157W" 2 +"YBR233W-A" 2 +"YDR282C" 1 +"YOL139C" 2 +"YJR155W" 1 +"YOR322C" 1 +"YLR427W" 1 +"YML100W" 5 +"YPL012W" 2 +"YDR286C" 1 +"YER129W" 1 +"YNL129W" 3 +"YGL100W" 2 +"YBL112C" 1 +"YFL044C" 5 +"YGR185C" 2 +"YIL037C" 1 +"YDR153C" 2 +"YGR270W" 1 +"YHR184W" 3 +"YPL148C" 1 +"YGR043C" 5 +"YOR100C" 1 +"YER031C" 2 +"YDL052C" 2 +"YMR233W" 4 +"YEL044W" 4 +"YJR108W" 3 +"YDR121W" 2 +"YOR184W" 2 +"YDR025W" 2 +"YNR007C" 1 +"YCR020C" 1 +"YBR263W" 2 +"YHR108W" 2 +"YLR442C" 2 +"YKL020C" 1 +"YHR091C" 1 +"YOR386W" 1 +"YLR277C" 2 +"YOR287C" 2 +"YLR381W" 1 +"YLR194C" 1 +"YKL056C" 2 +"YIL011W" 4 +"YOL166W-A" 2 +"YLL009C" 1 +"YIL033C" 1 +"YDR246W" 1 +"YPL164C" 1 +"YGR157W" 2 +"YJL159W" 5 +"YDR233C" 2 +"YOR323C" 2 +"YML066C" 3 +"YIL076W" 2 +"YPL011C" 2 +"YNL322C" 5 +"YDR522C" 3 +"YDL120W" 2 +"YER173W" 2 +"YFR023W" 1 +"YER091C" 1 +"YPR183W" 2 +"YPL010W" 2 +"YLR012C" 3 +"YMR197C" 1 +"YIL001W" 1 +"YER051W" 1 +"YMR148W" 1 +"YKR017C" 5 +"YLR215C" 3 +"YMR109W" 2 +"YDL005C" 1 +"YNL284C" 1 +"YKL006C-A" 1 +"YDL153C" 2 +"YJL172W" 4 +"YGR222W" 1 +"YOR327C" 4 +"YJL045W" 1 +"YDR160W" 1 +"YLR102C" 1 +"YOL166W-A.1" 2 +"YJR151W-A" 2 +"YPR085C" 1 +"YJL023C" 1 +"YJR104C" 4 +"YCR071C" 1 +"YAR028W" 2 +"YOR138C" 1 +"YGL078C" 2 +"YHL038C" 1 +"YOR107W" 1 +"YBR140C" 1 +"YDR125C" 3 +"YDR407C" 1 +"YOR231W" 1 +"YCR016W" 2 +"YPR023C" 1 +"YLR406C-A" 2 +"YDL207W" 2 +"YBR214W" 5 +"YGR158C" 2 +"YIL142W" 5 +"YLR330W" 4 +"YCR053W" 2 +"YPL183C" 2 +"YKL143W" 2 +"YPL112C" 2 +"YLR134W" 3 +"YGL006W-A" 2 +"YBR200W-A" 3 +"YDL247W.1" 3 +"YAR064W" 3 +"YLR183C" 2 +"YGR037C" 2 +"YCL044C" 2 +"YLR092W" 1 +"YJL116C" 5 +"YDL150W" 2 +"YDR166C" 1 +"YGL133W" 1 +"YML056C" 2 +"YPR144C" 2 +"YNL264C" 3 +"YER078C" 3 +"YLL011W" 2 +"YGR187C" 2 +"YOL083W" 1 +"YJL070C" 1 +"YGL126W" 5 +"YDR402C" 3 +"YOR159C" 3 +"YKL105C" 1 +"YGL206C" 2 +"YML011C" 3 +"YDR438W" 1 +"YJL146W" 1 +"YKL183W" 2 +"YPL041C" 2 +"YER080W" 4 +"YPL013C" 1 +"YHR092C" 1 +"YGR135W" 4 +"YGL216W" 2 +"YML128C" 5 +"YEL032W" 2 +"YLL018C-A" 2 +"YER005W" 1 +"YNL050C" 3 +"YJR003C" 2 +"YJL031C" 3 +"YBR159W" 2 +"YHR110W" 1 +"YIL109C" 2 +"YEL023C" 2 +"YDR368W" 4 +"YLR157W-C" 5 +"YDR004W" 1 +"YPR061C" 1 +"YPR097W" 3 +"YBR115C" 2 +"YPL231W" 2 +"YOR127W" 2 +"YGR128C" 2 +"YGR095C" 2 +"YCR018C" 2 +"YGL019W" 5 +"YPL187W" 2 +"YOR173W" 5 +"YPL176C" 2 +"YGL003C" 1 +"YPL201C" 1 +"YNR039C" 1 +"YMR288W" 2 +"YNL072W" 2 +"YFL002C" 2 +"YER010C" 2 +"YDR441C" 1 +"YCL051W" 3 +"YNL204C" 3 +"YHR058C" 1 +"YGR125W" 1 +"YCR089W" 2 +"YOR207C" 2 +"YHL019C" 5 +"YDL203C" 1 +"YNL148C" 2 +"YDR293C" 1 +"YHR177W" 3 +"YDR507C" 2 +"YDR088C" 3 +"YDR382W" 2 +"YBR155W" 2 +"YML092C" 5 +"YNL282W" 2 +"YJL036W" 5 +"YMR097C" 3 +"YPL277C.1" 1 +"YNL138W-A" 3 +"YCR031C" 2 +"YDR308C" 3 +"YPR152C" 3 +"YJR005C-A" 1 +"YPL211W" 2 +"YNL081C" 1 +"YMR247W-A" 3 +"YGL044C" 3 +"YDL241W" 2 +"YPL001W" 3 +"YLR320W" 1 +"YMR223W" 4 +"YOR304W" 1 +"YJR136C" 1 +"YDR351W" 1 +"YER131W" 2 +"YBL010C" 2 +"YLR051C" 2 +"YMR113W" 4 +"YOR106W" 3 +"YNL254C" 4 +"YNL214W" 5 +"YGR040W" 2 +"YHR127W" 3 +"YAR010C" 2 +"YGR003W" 1 +"YDR005C" 2 +"YJL191W" 2 +"YKL170W" 1 +"YER153C" 3 +"YMR209C" 4 +"YIL089W" 5 +"YFL036W" 1 +"YLR373C" 1 +"YBR248C" 2 +"YPL257W" 5 +"YDL197C" 1 +"YDR092W" 5 +"YMR240C" 1 +"YJR131W" 2 +"YJL213W" 1 +"YHR183W" 2 +"YHR112C" 1 +"YNL279W" 3 +"YBR255C-A" 1 +"YBL052C" 2 +"YBR063C" 1 +"YAL008W" 1 +"YGL033W" 3 +"YPL266W" 2 +"YBR200W" 1 +"YBL003C" 4 +"YHR068W" 2 +"YFR041C" 2 +"YDR316W" 1 +"YOR150W" 1 +"YMR155W" 1 +"YER048W-A" 4 +"YHR015W" 3 +"YBR179C" 1 +"YER050C" 1 +"YGL053W" 2 +"YBL045C" 1 +"YLR188W" 2 +"YGL116W" 2 +"YGL027C" 2 +"YPR009W" 2 +"YDR462W" 1 +"YBR210W" 2 +"YEL013W" 2 +"YPL230W" 1 +"YDL220C" 3 +"YLR153C" 2 +"YKR007W" 3 +"YGR163W" 4 +"YLR203C" 2 +"YMR035W" 1 +"YGR156W" 4 +"YGL016W" 2 +"YDR389W" 1 +"YNL326C" 4 +"YMR146C" 2 +"YDR321W" 2 +"YDL018C" 2 +"YOR373W" 2 +"YBL064C" 1 +"YPL119C-A" 1 +"YGR277C" 2 +"YEL035C" 1 +"YHR187W" 3 +"YKL207W" 2 +"YOR021C" 4 +"YDL045W-A" 1 +"YDL202W" 1 +"YJR093C" 1 +"YLL003W" 2 +"YMR038C" 2 +"YOR233W" 1 +"YPL171C" 1 +"YJL174W" 5 +"YBL025W" 1 +"YHL015W-A" 2 +"YDL169C" 1 +"YMR255W" 2 +"YJR070C" 2 +"YDR126W" 1 +"YPR072W" 2 +"YLR209C" 2 +"YJL020C" 1 +"YMR039C" 3 +"YDL226C" 3 +"YGL120C" 2 +"YGL220W" 3 +"YFL025C" 2 +"YOR283W" 2 +"YEL069C.1" 2 +"YMR040W" 1 +"YJL132W" 1 +"YCR021C" 1 +"YGL223C" 3 +"YGR138C" 3 +"YMR099C" 4 +"YPR115W" 1 +"YDL020C" 5 +"YLR107W" 4 +"YJL060W" 1 +"YML116W" 1 +"YFL027C" 2 +"YJL052W" 1 +"YNL027W" 1 +"YMR104C" 1 +"YIL172C" 1 +"YFR003C" 5 +"YGR271C-A" 2 +"YBR042C" 2 +"YFR013W" 2 +"YCR075C" 4 +"YKL046C" 2 +"YBR068C" 5 +"YIL024C" 1 +"YHR136C" 2 +"YDL140C" 2 +"YLR325C" 2 +"YDR493W" 1 +"YDR524W-A" 5 +"YHL008C" 3 +"YDR078C" 1 +"YDR113C" 2 +"YML002W" 1 +"YJL117W" 3 +"YLR192C" 2 +"YBR122C" 1 +"YHR138C" 1 +"YBL008W" 1 +"YMR027W" 5 +"YFL024C" 1 +"YML095C" 5 +"YNL286W" 1 +"YGL077C" 2 +"YMR269W" 2 +"YLR229C" 4 +"YMR056C" 1 +"YBL011W" 2 +"YBR026C" 5 +"YPR075C" 1 +"YKL109W" 1 +"YHR033W" 1 +"YOR177C" 1 +"YOL033W" 4 +"YOR334W" 1 +"YDR500C" 2 +"YNR032C-A" 2 +"YLR301W" 2 +"YDL232W" 2 +"YOR239W" 2 +"YNL321W" 1 +"YDL051W" 2 +"YPL079W" 2 +"YMR198W" 2 +"YEL022W" 2 +"YJR130C" 3 +"YKR002W" 1 +"YPL233W" 2 +"YNL018C" 3 +"YPL028W" 2 +"YDL208W" 2 +"YBR253W" 4 +"YDR047W" 2 +"YOL135C" 2 +"YNR071C" 3 +"YHR137W" 5 +"YLR438W" 5 +"YNL164C" 2 +"YHR007C" 2 +"YCR004C" 5 +"YBR302C" 2 +"YNL181W" 4 +"YKR051W" 1 +"YDL040C" 2 +"YMR065W" 2 +"YER004W" 5 +"YDL003W" 2 +"YIL014C-A" 3 +"YDR182W-A" 3 +"YER083C" 5 +"YLR241W" 1 +"YDR161W" 2 +"YLR082C" 2 +"YOR267C" 2 +"YGR221C" 2 +"YCR051W" 2 +"YOR202W" 2 +"YHR074W" 2 +"YDR260C" 1 +"YLR370C" 4 +"YGR155W" 2 +"YLL035W" 2 +"YER060W-A" 3 +"YJL065C" 2 +"YPR052C" 2 +"YOR356W" 1 +"YLR061W" 2 +"YNL146W" 5 +"YGL262W" 1 +"YKL050C" 3 +"YNL031C" 2 +"YPL133C" 1 +"YDL114W" 1 +"YDR097C" 2 +"YKL137W" 1 +"YLR347C" 2 +"YDR484W" 2 +"YBR182C-A" 3 +"YOL086W-A" 4 +"YDR182W" 2 +"YJR106W" 3 +"YOR222W" 2 +"YFL068W" 3 +"YNL230C" 1 +"YMR259C" 2 +"YML038C" 2 +"YGL226W" 1 +"YOL013C" 1 +"YDL073W" 2 +"YDR151C" 2 +"YDR342C" 1 +"YOR296W" 2 +"YGR035W-A" 3 +"YBR107C" 1 +"YMR001C" 2 +"YHR141C" 2 +"YKR025W" 2 +"YLL007C" 2 +"YNL183C" 1 +"YLR453C" 3 +"YGR169C" 2 +"YEL024W" 1 +"YCR096C" 1 +"YJR132W" 2 +"YOR017W" 1 +"YLR293C" 2 +"YLR389C" 2 +"YPR153W" 3 +"YML053C" 3 +"YNL215W" 5 +"YMR186W" 4 +"YBL039C" 2 +"YBR018C" 5 +"YPL109C" 1 +"YFL007W" 1 +"YBR201W" 4 +"YLR314C" 2 +"YOL034W" 1 +"YPR161C" 2 +"YJR092W" 2 +"YJL098W" 2 +"YPR088C" 4 +"YBR236C" 4 +"YGR220C" 1 +"YLR059C" 2 +"YHR163W" 2 +"YDL045C" 1 +"YER174C" 2 +"YHR009C" 1 +"YOR191W" 1 +"YOR075W" 4 +"YLL001W" 1 +"YJR137C" 1 +"YGL213C" 2 +"YDL022W" 5 +"YJL093C" 1 +"YHL014C" 1 +"YNL207W" 2 +"YMR073C" 1 +"YIL124W" 5 +"YGR072W" 2 +"YOR162C" 1 +"YLR142W" 1 +"YML120C" 1 +"YDL183C" 1 +"YLR039C" 2 +"YDL019C" 1 +"YMR308C" 2 +"YIL153W" 2 +"YNR064C" 3 +"YDR194C" 4 +"YLR113W" 2 +"YDR264C" 2 +"YMR018W" 3 +"YDL074C" 4 +"YFL048C" 2 +"YOL024W" 3 +"YML103C" 4 +"YDR494W" 1 +"YJL127C" 3 +"YIL146C" 1 +"YNL003C" 3 +"YNL103W" 1 +"YLR413W" 2 +"YOR163W" 4 +"YOR005C" 1 +"YML027W" 2 +"YHR069C" 2 +"YPL070W" 1 +"YEL076C-A" 3 +"YAL046C" 2 +"YNL117W" 1 +"YOR243C" 2 +"YPR124W" 2 +"YMR300C" 2 +"YER156C" 2 +"YBR184W" 3 +"YLR288C" 1 +"YDL206W" 1 +"YNR068C" 1 +"YBR006W" 1 +"YLR361C-A" 3 +"YPL172C" 1 +"YPR089W" 2 +"YNL253W" 4 +"YLL022C" 2 +"YCL010C" 4 +"YDL059C" 1 +"YDR162C" 1 +"YBR205W" 2 +"YDL015C" 2 +"YLR197W" 2 +"YBL055C" 3 +"YMR101C" 3 +"YOR113W" 1 +"YLR093C" 1 +"YAL065C" 3 +"YBR195C" 1 +"YIL103W" 2 +"YDL147W" 5 +"YOL119C" 1 +"YBR221W-A" 3 +"YDL144C" 2 +"YFL029C" 2 +"YJL210W" 1 +"YDL122W" 2 +"YGR017W" 2 +"YNL094W" 1 +"YOR260W" 2 +"YPR079W" 1 +"YDL006W" 1 +"YNL194C" 5 +"YDL178W" 1 +"YML071C" 3 +"YPL218W" 2 +"YGR065C" 1 +"YJL035C" 2 +"YGL243W" 3 +"YMR021C" 3 +"YGR275W" 2 +"YGL150C" 1 +"YML031W" 2 +"YKL041W" 4 +"YHL015W" 2 +"YDR181C" 1 +"YPL267W" 2 +"YNL025C" 3 +"YGR016W" 5 +"YHL021C" 1 +"YLR195C" 2 +"YMR272C" 5 +"YCL030C" 1 +"YGR006W" 3 +"YHR076W" 1 +"YKL026C" 1 +"YMR203W" 4 +"YHR142W" 2 +"YHL009W-A" 2 +"YDR120C" 2 +"YDL056W" 2 +"YER043C" 2 +"YPL022W" 1 +"YBR130C" 2 +"YIL088C" 4 +"YDR299W" 2 +"YNR072W.1" 3 +"YAL049C" 4 +"YER047C" 1 +"YNL009W" 1 +"YIL099W" 1 +"YDR014W" 5 +"YMR293C" 1 +"YOL042W" 4 +"YJR040W" 2 +"YLR084C" 2 +"YPL098C" 4 +"YBR289W" 2 +"YMR090W" 5 +"YHL039W" 2 +"YIL077C" 1 +"YMR232W" 3 +"YDL212W" 2 +"YMR002W" 4 +"YMR136W" 1 +"YMR299C" 4 +"YDR116C" 1 +"YIL111W" 5 +"YBR234C" 4 +"YNL193W" 5 +"YNL239W" 5 +"YER159C" 5 +"YJR125C" 2 +"YMR041C" 1 +"YPL116W" 4 +"YIL136W" 5 +"YJL179W" 3 +"YDL107W" 1 +"YDR226W" 2 +"YJL003W" 4 +"YLR333C" 2 +"YCR108C" 3 +"YPL271W" 1 +"YMR030W-A" 2 +"YOL031C" 2 +"YOR367W" 4 +"YBR166C" 2 +"YHR047C" 2 +"YGR058W" 2 +"YPR159W" 3 +"YNL034W.1" 3 +"YGL140C" 2 +"YLR412W" 2 +"YGL043W" 4 +"YGR169C-A" 3 +"YBR039W" 1 +"YPL146C" 2 +"YDR232W" 2 +"YNL010W" 2 +"YNL064C" 2 +"YML013W" 1 +"YMR013W-A" 2 +"YLR088W" 2 +"YCR032W" 1 +"YGL202W" 2 +"YPL224C" 1 +"YFR053C" 5 +"YNL048W" 2 +"YMR315W-A" 2 +"YHR045W" 2 +"YOR317W" 5 +"YPL268W" 1 +"YLR254C" 1 +"YDR139C" 2 +"YPL087W" 1 +"YCL073C" 3 +"YBL098W" 1 +"YGL146C" 1 +"YHR083W" 2 +"YLR156W" 3 +"YOR254C" 2 +"YPR019W" 2 +"YGL188C-A" 2 +"YOR361C" 2 +"YJL190C" 2 +"YKR014C" 5 +"YDR087C" 2 +"YER110C" 2 +"YBR225W" 1 +"YDR392W" 1 +"YCR024C" 1 +"YDR051C" 4 +"YOL012C" 2 +"YOR136W" 5 +"YHR042W" 2 +"YBR189W" 2 +"YPL160W" 2 +"YCR044C" 4 +"YHR150W" 1 +"YHR100C" 1 +"YGR038W" 2 +"YMR070W" 1 +"YGL180W" 1 +"YGL113W" 1 +"YGL158W" 5 +"YCR033W" 2 +"YBR001C" 1 +"YNL302C" 2 +"YIL056W" 4 +"YJR024C" 2 +"YHR190W" 4 +"YOR358W" 1 +"YKL217W" 1 +"YPL163C" 2 +"YDR359C" 3 +"YOR149C" 1 +"YPL122C" 2 +"YIL137C" 1 +"YGR241C" 2 +"YGL245W" 2 +"YDR510W" 4 +"YNR006W" 1 +"YPL273W" 2 +"YKL157W" 5 +"YHR021W-A" 3 +"YNR009W" 2 +"YIR008C" 4 +"YOR340C" 2 +"YJR031C" 2 +"YDR304C" 4 +"YGR013W" 3 +"YMR289W" 3 +"YER134C" 3 +"YHL011C" 2 +"YMR183C" 2 +"YLR264W" 2 +"YBR298C-A" 3 +"YNL046W" 2 +"YOR117W" 4 +"YML014W" 3 +"YNL145W" 2 +"YLR409C" 2 +"YER175W-A" 2 +"YML126C" 2 +"YDR167W" 4 +"YHR061C" 2 +"YMR102C" 4 +"YJR077C" 1 +"YPR188C" 3 +"YAL032C" 1 +"YPR040W" 2 +"YGL208W" 1 +"YOR131C" 4 +"YIL126W" 1 +"YCR100C" 3 +"YGL191W" 1 +"YGL236C" 2 +"YDR475C" 1 +"YMR206W" 1 +"YBR070C" 2 +"YGR180C" 2 +"YAL061W" 5 +"YKR099W" 2 +"YNR048W" 2 +"YLR097C" 3 +"YKR072C" 1 +"YDR358W" 5 +"YPR011C" 1 +"YJR036C" 1 +"YLR426W" 4 +"YKL218C" 1 +"YER164W" 2 +"YMR034C" 1 +"YOR335C" 2 +"YBR072C-A" 3 +"YPR030W" 1 +"YIL050W" 1 +"YDR132C" 1 +"YKL154W" 2 +"YDR216W" 1 +"YML107C" 2 +"YDL110C" 1 +"YLR281C" 3 +"YBR069C" 5 +"YCR082W" 4 +"YGL231C" 4 +"YPR132W" 2 +"YKL151C" 5 +"YFR057W" 3 +"YGR106C" 2 +"YHR119W" 1 +"YBR058C-A" 1 +"YNL071W" 5 +"YDR204W" 1 +"YML081C-A" 1 +"YDR461W" 2 +"YOR362C" 5 +"YFR029W" 1 +"YHR162W" 4 +"YDR122W" 1 +"YPL053C" 4 +"YPL222W" 1 +"YKR019C" 1 +"YER039C" 1 +"YAL051W" 1 +"YDR284C" 4 +"YNL262W" 4 +"YLL053C" 1 +"YIL118W" 2 +"YPR037C" 4 +"YOR245C" 1 +"YFL016C" 5 +"YLR090W" 3 +"YFR032C-B" 3 +"YMR268C" 1 +"YOR123C" 3 +"YGR250C" 1 +"YDR077W" 5 +"YPL055C" 3 +"YDR399W" 4 +"YJL204C" 2 +"YOR210W" 2 +"YBR221C" 2 +"YER151C" 1 +"YLR211C" 3 +"YMR062C" 1 +"YHR216W" 2 +"YJL077W-B" 1 +"YNL096C" 2 +"YKL090W" 2 +"YKR030W" 2 +"YIL095W" 2 +"YOL101C" 1 +"YOR348C" 1 +"YIL158W" 2 +"YJL214W" 3 +"YDR409W" 1 +"YBR211C" 1 +"YHR192W" 3 +"YGL067W" 2 +"YPL247C" 1 +"YDR256C" 1 +"YFR026C" 3 +"YML077W" 2 +"YCL001W-B" 3 +"YFL003C" 2 +"YDR124W" 3 +"YDR411C" 1 +"YKR006C" 1 +"YPL029W" 1 +"YAL063C-A" 3 +"YER044C-A" 2 +"YBR125C" 1 +"YCL042W" 3 +"YLR403W" 2 +"YPR114W" 2 +"YLR100W" 2 +"YGL017W" 1 +"YAL014C" 1 +"YLR143W" 2 +"YLR289W" 1 +"YKL181W" 2 +"YDL113C" 1 +"YKL006W" 2 +"YOR176W" 2 +"YMR213W" 1 +"YDR021W" 2 +"YLL066W-B.2" 3 +"YLR431C" 1 +"YBL029C-A" 1 +"YBL099W" 1 +"YMR211W" 1 +"YMR323W" 1 +"YOR089C" 5 +"YNL042W" 1 +"YPL243W" 2 +"YDL036C" 2 +"YDR174W" 4 +"YLR372W" 2 +"YER074W" 2 +"YPL147W" 1 +"YNL257C" 1 +"YCR027C" 4 +"YFR031C-A" 2 +"YOL113W" 5 +"YLR170C" 4 +"YDR103W" 2 +"YFL010C" 5 +"YLL055W" 1 +"YNL039W" 3 +"YMR267W" 2 +"YBL022C" 5 +"YOR188W" 2 +"YOR249C" 2 +"YIL085C" 2 +"YNL218W" 1 +"YLR058C" 2 +"YMR181C" 1 +"YBR086C" 2 +"YDR362C" 1 +"YGL021W" 2 +"YMR022W" 4 +"YPR196W" 3 +"YDR464W" 3 +"YLR099C" 4 +"YHR175W" 4 +"YDL192W" 2 +"YMR256C" 1 +"YNL053W" 2 +"YCL038C" 1 +"YKL139W" 1 +"YBR280C" 1 +"YNL241C" 5 +"YNL311C" 1 +"YOR295W" 2 +"YBL043W" 1 +"YNL323W" 2 +"YDR408C" 2 +"YHR090C" 3 +"YOR208W" 1 +"YNL007C" 5 +"YIL022W" 2 +"YCL052C" 1 +"YHR086W-A" 2 +"YER017C" 1 +"YHL033C.1" 2 +"YGL209W" 4 +"YML055W" 2 +"YGR009C" 1 +"YPR147C" 2 +"YDL131W" 2 +"YKL210W" 5 +"YCL014W" 4 +"YLR154W-F" 3 +"YHL048W" 2 +"YER138W-A" 2 +"YML111W" 2 +"YMR093W" 2 +"YMR138W" 2 +"YER104W" 1 +"YOR301W" 2 +"YOL075C" 1 +"YKL189W" 1 +"YBR231C" 1 +"YDL082W" 2 +"YJL151C" 4 +"YNL211C" 1 +"YLL018C" 2 +"YBL028C" 2 +"YAR018C" 2 +"YNL102W" 2 +"YDL021W" 1 +"YGL093W" 1 +"YOR324C" 1 +"YDR074W" 5 +"YNL187W" 3 +"YKL117W" 5 +"YOR026W" 4 +"YML127W" 2 +"YNL231C" 4 +"YBL101W-C" 3 +"YDL037C" 2 +"YDR171W" 1 +"YLR182W" 1 +"YOL163W" 5 +"YDL154W" 1 +"YBR120C" 1 +"YOR372C" 4 +"YMR011W" 2 +"YBL093C" 1 +"YPR129W" 2 +"YMR019W" 1 +"YGR131W" 4 +"YDR322W" 1 +"YPR100W" 1 +"YKL093W" 1 +"YDR314C" 3 +"YDR443C" 3 +"YOR382W" 2 +"YLR332W" 5 +"YAL048C" 3 +"YGR093W" 1 +"YMR234W" 3 +"YDR019C" 2 +"YCR008W" 2 +"YNL317W" 2 +"YPR133W-A" 4 +"YER086W" 2 +"YDL164C" 4 +"YIL068C" 1 +"YDR350C" 1 +"YKL142W" 5 +"YML106W" 2 +"YBL071C-B" 3 +"YJR129C" 2 +"YAL040C" 2 +"YJL156C" 1 +"YJR005W" 1 +"YJR041C" 2 +"YPL038W-A" 3 +"YKL144C" 2 +"YER075C" 1 +"YOR374W" 1 +"YGL028C" 2 +"YGR154C" 1 +"YOL095C" 1 +"YNL247W" 2 +"YBR161W" 4 +"YGR146C-A" 3 +"YBR118W" 2 +"YPR199C" 1 +"YGR230W" 1 +"YKR058W" 1 +"YER076C" 5 +"YKR095W-A" 2 +"YKL106W" 2 +"YKR004C" 1 +"YML068W" 5 +"YML100W-A" 3 +"YJL217W" 3 +"YHR164C" 2 +"YNL213C" 3 +"YFL053W" 5 +"YNL232W" 2 +"YER112W" 2 +"YBL080C" 1 +"YFL042C" 1 +"YOL125W" 2 +"YOL016C" 1 +"YNL036W" 1 +"YOL103W" 2 +"YOR276W" 2 +"YHL047C" 2 +"YGR236C" 1 +"YPR018W" 2 +"YPL040C" 1 +"YFL021W" 1 +"YER087W" 2 +"YGL159W" 4 +"YER074W-A" 1 +"YBR061C" 2 +"YLR036C" 5 +"YHR205W" 2 +"YIL129C" 1 +"YKL028W" 3 +"YLR432W" 2 +"YGL201C" 2 +"YGL115W" 4 +"YML130C" 2 +"YGR229C" 2 +"YKL134C" 1 +"YDR487C" 2 +"YDL002C" 3 +"YLR393W" 3 +"YHR094C" 4 +"YLR238W" 2 +"YOR226C" 4 +"YOL029C" 4 +"YMR052W" 1 +"YBR123C" 2 +"YPL169C" 2 +"YHR027C" 5 +"YER056C-A" 2 +"YLR419W" 2 +"YDR335W" 1 +"YDL017W" 1 +"YLR449W" 2 +"YIR038C" 5 +"YLR361C" 1 +"YOR140W" 1 +"YPL241C" 2 +"YKL107W" 1 +"YLR216C" 2 +"YOR211C" 1 +"YPL256C" 2 +"YAL037W" 3 +"YDL039C" 2 +"YLL062C" 1 +"YLR377C" 1 +"YCL005W-A" 2 +"YNR051C" 3 +"YMR251W" 5 +"YDR011W" 4 +"YPR119W" 2 +"YBR073W" 2 +"YMR276W" 5 +"YMR081C" 1 +"YDR016C" 4 +"YDR177W" 5 +"YEL037C" 2 +"YOR132W" 1 +"YGL205W" 1 +"YBR261C" 2 +"YGR189C" 2 +"YNL138W" 5 +"YPL104W" 1 +"YOR048C" 2 +"YHR106W" 1 +"YOL004W" 2 +"YGR206W" 3 +"YGR101W" 1 +"YKL029C" 2 +"YOL070C" 3 +"YPR007C" 1 +"YDL135C" 4 +"YPR172W" 5 +"YHR080C" 1 +"YBR029C" 2 +"YIL169C.1" 3 +"YCL026C-B" 1 +"YGL079W" 2 +"YML058W-A" 3 +"YJR102C" 3 +"YER090W" 2 +"YHR132C" 4 +"YBL023C" 2 +"YDL038C" 3 +"YDL123W" 1 +"YLR292C" 2 +"YMR230W.1" 2 +"YMR124W" 1 +"YNL246W" 3 +"YMR296C" 2 +"YML088W" 3 +"YDL014W" 2 +"YDL010W" 1 +"YAR042W" 1 +"YMR127C" 1 +"YKL071W" 5 +"YHL017W" 2 +"YKL088W" 3 +"YMR167W" 1 +"YLR399C" 5 +"YPR008W" 1 +"YDR023W" 2 +"YOL137W" 2 +"YIL048W" 1 +"YNL305C" 1 +"YPR063C" 2 +"YHR084W" 2 +"YGL232W" 2 +"YPR083W" 1 +"YPL232W" 1 +"YLR146C" 2 +"YJL077C" 3 +"YNR015W" 2 +"YPR054W" 3 +"YNL131W" 4 +"YBL004W" 2 +"YMR100W" 3 +"YPL162C" 5 +"YOL057W" 2 +"YLR456W" 1 +"YBL032W" 2 +"YER171W" 2 +"YPL135W" 5 +"YBL059C-A" 1 +"YGL176C" 1 +"YGL147C" 2 +"YOR286W" 4 +"YNL115C" 1 +"YLL064C" 4 +"YPL202C" 5 +"YGL064C" 1 +"YNR049C" 1 +"YOL056W" 4 +"YOR311C" 2 +"YNL302C.1" 2 +"YDR527W" 2 +"YGR289C" 1 +"YOR130C" 1 +"YIR009W" 2 +"YGL037C" 5 +"YBR013C" 2 +"YOL086C" 2 +"YPL246C" 2 +"YGL098W" 1 +"YLR162W" 2 +"YNL058C" 2 +"YCR002C" 2 +"YKL152C" 2 +"YHR105W" 3 +"YDR503C" 5 +"YOR065W" 1 +"YOR034C-A" 1 +"YPL236C" 1 +"YLR290C" 4 +"YNL172W" 1 +"YBR080C" 2 +"YER008C" 1 +"YGR122W" 1 +"YGL032C" 2 +"YER001W" 3 +"YEL002C" 2 +"YNL255C" 2 +"YDL171C" 2 +"YPL052W" 2 +"YLR455W" 1 +"YKL101W" 2 +"YBR274W" 4 +"YLL041C" 1 +"YJL081C" 2 +"YGR147C" 1 +"YBL081W" 2 +"YGR237C" 5 +"YJR133W" 4 +"YOR204W" 2 +"YHR052W" 2 +"YNR018W" 2 +"YOR212W" 2 +"YBL059W" 3 +"YLR375W" 1 +"YBL091C" 2 +"YFR040W" 1 +"YDR476C" 5 +"YKL155C" 2 +"YOR383C" 2 +"YOR143C" 3 +"YIL148W" 2 +"YMR207C" 1 +"YER032W" 4 +"YDR513W" 1 +"YGL060W" 2 +"YOR352W" 1 +"YLR439W" 5 +"YNL022C" 3 +"YHR179W" 2 +"YMR080C" 2 +"YPL086C" 2 +"YPR026W" 1 +"YHR168W" 1 +"YJL006C" 3 +"YDL092W" 2 +"YPL046C" 3 +"YMR166C" 1 +"YNL245C" 4 +"YGR143W" 2 +"YJL101C" 1 +"YOL159C" 5 +"YLR443W" 2 +"YOL164W" 5 +"YLL010C" 5 +"YKR048C" 2 +"YBR272C" 5 +"YGR276C" 2 +"YMR218C" 2 +"YDR427W" 4 +"YLL046C" 3 +"YCR106W" 3 +"YJR109C" 1 +"YLR191W" 1 +"YDR312W" 2 +"YAL030W" 1 +"YML073C" 2 +"YNL274C" 1 +"YOR268C" 3 +"YGL227W" 1 +"YNL004W" 3 +"YDR294C" 4 +"YPR120C" 1 +"YDR386W" 1 +"YER048C" 5 +"YDR156W" 2 +"YOL014W" 4 +"YLR228C" 3 +"YER155C" 2 +"YGR153W" 3 +"YKL095W" 3 +"YIL131C" 2 +"YNL173C" 1 +"YGL103W" 2 +"YGR109W-B" 2 +"YKL052C" 5 +"YDL126C" 4 +"YLR019W" 2 +"YDL246C" 5 +"YJR080C" 1 +"YAL056W" 1 +"YER188C-A" 3 +"YNL315C" 1 +"YNR056C" 1 +"YPR112C" 2 +"YFL038C" 4 +"YNL316C" 2 +"YML114C" 2 +"YMR258C" 2 +"YOR196C" 1 +"YNL260C" 2 +"YAL044W-A" 1 +"YDL190C" 1 +"YGR121C" 1 +"YJL128C" 2 +"YPR138C" 4 +"YOR281C" 2 +"YOR109W" 1 +"YFR012W" 3 +"YBR170C" 1 +"YHR213W" 3 +"YOL089C" 1 +"YOL159C-A" 2 +"YBR052C" 5 +"YKR097W" 1 +"YJR030C" 2 +"YMR312W" 2 +"YLR068W" 2 +"YJL010C" 2 +"YGR109C" 2 +"YLR176C" 1 +"YIL071C" 5 +"YNL162W-A" 2 +"YGR054W" 2 +"YLR022C" 2 +"YIL119C" 3 +"YNL134C" 5 +"YBR148W" 3 +"YGR127W" 1 +"YER133W" 4 +"YBL087C" 2 +"YMR230W-A" 2 +"YHR028C" 1 +"YDR317W" 3 +"YLR250W" 4 +"YGR119C" 3 +"YLR044C" 2 +"YGR174C" 1 +"YGL258W-A" 2 +"YCL001W" 4 +"YOL121C" 2 +"YLR060W" 2 +"YFR052W" 4 +"YNR023W" 1 +"YIL049W" 2 +"YIR003W" 1 +"YOR230W" 5 +"YDL193W" 2 +"YOR197W" 2 +"YDL070W" 3 +"YNL208W" 5 +"YGL123W" 2 +"YOR160W" 2 +"YJR019C" 1 +"YJR050W" 3 +"YOL147C" 1 +"YHR165C" 1 +"YER098W" 1 +"YDR267C" 3 +"YIL051C" 2 +"YCR009C" 5 +"YBL029W" 1 +"YAR071W" 2 +"YPR133C" 4 +"YLR157W-C.1" 2 +"YGR136W" 5 +"YBL071W-A" 2 +"YML054C-A" 3 +"YDL111C" 2 +"YIL152W" 1 +"YGL075C" 3 +"YHR102W" 1 +"YOR027W" 5 +"YPL074W" 2 +"YDR229W" 3 +"YBR085W" 2 +"YIL130W" 1 +"YHR025W" 2 +"YJR007W" 2 +"YCL012C" 1 +"YLR078C" 4 +"YKL213C" 4 +"YML119W" 1 +"YHR153C" 2 +"YPL254W" 2 +"YDR529C" 1 +"YDR446W" 3 +"YDL090C" 2 +"YJL127C-B" 1 +"YOL051W" 1 +"YLR015W" 2 +"YKL141W" 1 +"YJR066W" 2 +"YIL065C" 1 +"YNL137C" 1 +"YBL038W" 1 +"YCR084C" 2 +"YNL202W" 1 +"YJR148W" 5 +"YKL197C" 3 +"YAL060W" 1 +"YDR410C" 2 +"YGL181W" 5 +"YLR335W" 2 +"YDR138W" 2 +"YOL102C" 1 +"YPL179W" 1 +"YPR041W" 2 +"YCL029C" 2 +"YOR023C" 1 +"YIL082W-A" 2 +"YIL045W" 1 +"YBR156C" 1 +"YMR292W" 2 +"YER118C" 2 +"YPL110C" 1 +"YGR150C" 1 +"YGL009C" 2 +"YKR093W" 5 +"YOR312C.1" 2 +"YKL032C" 1 +"YDL156W" 2 +"YOR092W" 2 +"YML047C" 3 +"YCR077C" 2 +"YHR098C" 2 +"YGL184C" 1 +"YNR069C" 3 +"YBR035C" 4 +"YLL042C" 1 +"YMR047C" 2 +"YBR127C" 2 +"YHR013C" 2 +"YOR186W" 5 +"YHR148W" 2 +"YER068W" 2 +"YHR088W" 2 +"YCR015C" 4 +"YDR385W" 2 +"YGL045W" 1 +"YEL053C" 3 +"YDR289C" 1 +"YER029C" 3 +"YEL072W" 1 +"YHR029C" 1 +"YIL043C" 2 +"YGL139W" 1 +"YGL087C" 1 +"YGL127C" 1 +"YMR174C" 5 +"YAR068W" 2 +"YDL224C" 2 +"YIR014W" 1 +"YKL098W" 2 +"YDR031W" 5 +"YIL139C" 1 +"YDR173C" 1 +"YKL215C" 1 +"YCR107W" 5 +"YNL069C" 2 +"YJR122W" 1 +"YOR201C" 2 +"YMR191W" 1 +"YGL230C" 3 +"YIL031W" 3 +"YNL157W" 5 +"YOL164W-A" 2 +"YLR219W" 1 +"YPR058W" 2 +"YPR158W" 5 +"YCR034W" 2 +"YER057C" 2 +"YNL227C" 2 +"YOR111W" 1 +"YBR256C" 3 +"YGL246C" 2 +"YNL127W" 1 +"YBL069W" 2 +"YBR288C" 2 +"YER120W" 2 +"YJL034W" 2 +"YNL278W" 1 +"YER130C" 5 +"YOR215C" 1 +"YOL091W" 3 +"YDR084C" 4 +"YCR045C" 3 +"YLR447C" 2 +"YOR220W" 1 +"YJL104W" 1 +"YPR102C" 2 +"YIL067C" 2 +"YJR044C" 4 +"YGR067C" 1 +"YDR201W" 3 +"YKL182W" 2 +"YGL200C" 2 +"YFL031W" 3 +"YGL194C" 3 +"YPR036W-A" 4 +"YNR024W" 2 +"YFL065C" 2 +"YKL145W" 5 +"YHR010W" 2 +"YIL155C" 1 +"YKL128C" 2 +"YGR243W" 1 +"YLR359W" 2 +"YGR077C" 2 +"YLR155C" 2 +"YBR034C" 2 +"YBR072W" 1 +"YJL027C" 2 +"YGR102C" 1 +"YDR311W" 2 +"YJR115W" 3 +"YAL034W-A" 1 +"YPL075W" 2 +"YLR154C" 2 +"YLR285C-A" 2 +"YJL005W" 1 +"YPR159C-A" 3 +"YML004C" 4 +"YEL020W-A" 1 +"YPL249C" 1 +"YER082C" 2 +"YFR047C" 4 +"YBR188C" 3 +"YHR107C" 2 +"YFR046C" 1 +"YLR066W" 2 +"YGL002W" 1 +"YBR276C" 2 +"YPR154W" 1 +"YML018C" 2 +"YDR058C" 5 +"YDL180W" 1 +"YLL021W" 3 +"YMR210W" 5 +"YLR138W" 2 +"YOR085W" 2 +"YLR451W" 2 +"YKL216W" 2 +"YPR095C" 1 +"YLR129W" 2 +"YGR048W" 5 +"YLR380W" 2 +"YGR123C" 2 +"YLL054C" 3 +"YLR104W" 2 +"YOL116W" 1 +"YDR366C" 2 +"YLL005C" 3 +"YBL003C.1" 2 +"YMR243C" 2 +"YNL271C" 1 +"YGR278W" 2 +"YMR295C" 5 +"YDR338C" 1 +"YDR180W" 1 +"YLR305C" 2 +"YOR057W" 2 +"YCR020C-A" 2 +"YOR368W" 1 +"YEL070W" 1 +"YPR198W" 2 +"YLR042C" 2 +"YBR089C-A.1" 1 +"YOR051C" 2 +"YIL063C" 4 +"YJL107C" 3 +"YDR263C" 2 +"YLR115W" 2 +"YGL247W" 1 +"YOR307C" 2 +"YIL101C" 5 +"YOR265W" 2 +"YMR270C" 3 +"YGL039W" 2 +"YGL157W" 2 +"YDR419W" 2 +"YMR129W" 2 +"YMR032W" 2 +"YNL328C" 3 +"YGR096W" 2 +"YLR186W" 2 +"YBR047W" 1 +"YDR179C" 3 +"YPR049C" 1 +"YAR075W" 5 +"YPL265W" 5 +"YGL058W" 4 +"YER094C" 5 +"YMR020W" 3 +"YKL087C" 1 +"YLR278C" 1 +"YDR357C" 3 +"YNL210W" 3 +"YIR005W" 3 +"YDR378C" 4 +"YNL223W" 1 +"YMR072W" 4 +"YGR174W-A.1" 1 +"YHR078W" 1 +"YPL225W" 4 +"YLL031C" 2 +"YDL080C" 1 +"YER067W" 1 +"YDL072C" 4 +"YBR290W" 1 +"YHR194W" 1 +"YDR332W" 1 +"YBL054W" 2 +"YBL104C" 2 +"YMR173W" 5 +"YPR024W" 2 +"YBL106C" 1 +"YNL035C" 2 +"YPL200W" 1 +"YCR105W" 3 +"YOR304C-A" 2 +"YJR107W" 1 +"YER049W" 2 +"YLR144C" 1 +"YDR280W" 2 +"YOL073C" 5 +"YGL117W" 1 +"YAL043C" 2 +"YOR337W" 2 +"YFR034C" 1 +"YJL062W-A" 1 +"YLR128W" 1 +"YHR210C" 2 +"YJL013C" 1 +"YBR045C" 1 +"YDL098C" 4 +"YDL238C" 1 +"YER074W.1" 2 +"YPR148C" 5 +"YJR043C" 2 +"YER107C" 2 +"YLR312C-B" 2 +"YGR097W" 1 +"YHR072W-A" 2 +"YOR280C" 2 +"YGR100W" 1 +"YBL047C" 2 +"YBL030C" 1 +"YIL007C" 1 +"YPR113W" 2 +"YOR227W" 1 +"YBL002W" 4 +"YKR045C" 1 +"YNL097C-A" 3 +"YER145C" 2 +"YGL248W" 1 +"YGR091W" 2 +"YLL025W" 1 +"YPL014W" 3 +"YCR086W" 3 +"YJL170C" 3 +"YPR034W" 3 +"YJR127C" 1 +"YCR046C" 2 +"YML037C" 3 +"YJR085C" 1 +"YLR309C" 1 +"YDR218C" 1 +"YPL191C" 1 +"YIL023C" 2 +"YPL213W" 3 +"YNR059W" 1 +"YNL040W" 4 +"YHR151C" 3 +"YPL008W" 1 +"YKL179C" 2 +"YMR176W" 1 +"YGL106W" 2 +"YHR039C" 2 +"YIL035C" 4 +"YGL241W" 4 +"YJL198W" 2 +"YPL064C" 3 +"YML109W" 2 +"YPL152W-A" 3 +"YKL092C" 3 +"YDR277C" 1 +"YIL122W" 4 +"YKL171W" 1 +"YGR251W" 2 +"YNL300W" 2 +"YDR042C" 2 +"YOR072W-B.1" 3 +"YLL063C" 2 +"YKL078W" 2 +"YJL157C" 2 +"YLR117C" 3 +"YEL005C" 1 +"YMR194C-B" 1 +"YDL209C" 2 +"YGR105W" 2 +"YCL033C" 5 +"YBR220C" 2 +"YNL151C" 2 +"YGR138C.1" 3 +"YLR010C" 1 +"YDR425W" 1 +"YPR016C" 2 +"YOR043W" 2 +"YGR118W.1" 2 +"YJR006W" 2 +"YKL113C" 2 +"YJL184W" 1 +"YNL085W" 2 +"YPL181W" 1 +"YPL096W" 2 +"YDR478W" 2 +"YLR072W" 2 +"YKL127W" 2 +"YGL081W" 3 +"YPR105C" 1 +"YDR421W" 1 +"YOR078W" 2 +"YDR152W" 2 +"YOL149W" 2 +"YOR096W" 2 +"YMR130W" 2 +"YDR444W" 3 +"YGR280C" 2 +"YLR406C" 2 +"YOR293W" 2 +"YER184C" 3 +"YMR162C" 2 +"YJR061W" 1 +"YGR257C" 1 +"YOR030W" 2 +"YNL078W" 3 +"YDR488C" 2 +"YHR016C" 5 +"YPR078C" 3 +"YPL076W" 5 +"YMR222C" 2 +"YIL062C" 5 +"YOR142W" 5 +"YKR023W" 1 +"YDR176W" 3 +"YGR225W" 1 +"YER180C-A" 3 +"YBR222C" 1 +"YLR163C" 2 +"YPL157W" 2 +"YKL040C" 3 +"YMR028W" 5 +"YLR304C" 5 +"YDR091C" 2 +"YKR076W" 5 +"YMR060C" 2 +"YCL028W" 2 +"YGR203W" 1 +"YAL033W" 2 +"YBR229C" 2 +"YLR086W" 1 +"YKR064W" 1 +"YBR054W" 5 +"YPL129W" 2 +"YHR115C" 2 +"YGR021W" 1 +"YPL093W" 2 +"YJR084W" 3 +"YOR380W" 1 +"YOL093W" 3 +"YLR187W" 1 +"YBR284W" 3 +"YJR015W" 2 +"YPL069C" 2 +"YGR142W" 5 +"YML005W" 1 +"YNL122C" 1 +"YLR223C" 2 +"YLR046C" 2 +"YPL252C" 2 +"YKR053C" 3 +"YDR302W" 2 +"YGR200C" 2 +"YER141W" 5 +"YER115C" 3 +"YHR172W" 2 +"YNL135C" 2 +"YPR046W" 2 +"YHR064C" 2 +"YJL051W" 2 +"YGR234W" 2 +"YNL280C" 2 +"YNL092W" 1 +"YLR462W" 3 +"YJL143W" 3 +"YMR297W" 5 +"YDR384C" 2 +"YOR371C" 2 +"YKL007W" 4 +"YAR003W" 1 +"YLR017W" 2 +"YCR104W" 3 +"YDR013W" 3 +"YHR017W" 1 +"YEL025C" 1 +"YHL016C" 1 +"YER033C" 1 +"YMR157C" 1 +"YGL076C" 2 +"YNL133C" 1 +"YCL025C" 5 +"YBR117C" 5 +"YBR087W" 2 +"YGL125W" 1 +"YHR031C" 2 +"YNL056W" 2 +"YJL062W" 2 +"YDR034W-B" 1 +"YNL191W" 2 +"YHR022C" 3 +"YJL037W" 1 +"YJL118W" 2 +"YNL220W" 2 +"YDR028C" 1 +"YDR296W" 1 +"YPL094C" 2 +"YLR085C" 1 +"YER092W" 4 +"YOR241W" 2 +"YBR204C" 5 +"YGL035C" 2 +"YLR378C" 2 +"YPL166W" 1 +"YOR328W" 1 +"YOL114C" 5 +"YDR536W" 1 +"YKL222C" 2 +"YHL013C" 3 +"YMR120C" 2 +"YGL099W" 2 +"YGR042W" 1 +"YDR170C" 2 +"YMR117C" 3 +"YBR038W" 2 +"YKR095W" 3 +"YGL183C" 3 +"YDR050C" 4 +"YJL073W" 2 +"YER187W" 3 +"YDL129W" 3 +"YOR001W" 2 +"YOR161C" 5 +"YLR035C" 3 +"YOL065C" 5 +"YMR286W" 1 +"YER056C" 2 +"YDL058W" 1 +"YLR327C" 1 +"YOR224C" 2 +"YPL229W" 1 +"YML085C" 2 +"YAR035W" 1 +"YKR020W" 2 +"YDL079C" 1 +"YCR043C" 2 +"YOR293C-A" 3 +"YLR096W" 2 +"YLL061W" 1 +"YEL015W" 3 +"YOR298W" 3 +"YOR064C" 1 +"YMR177W" 4 +"YLR414C" 5 +"YOR274W" 2 +"YER175C" 1 +"YIL147C" 2 +"YDR492W" 1 +"YGL234W" 2 +"YEL057C" 1 +"YDR143C" 1 +"YGR192C" 2 +"YNL099C" 2 +"YMR059W" 4 +"YIL087C" 5 +"YNR060W" 2 +"YOR180C" 1 +"YML074C" 2 +"YDL227C" 2 +"YPR065W" 1 +"YGR121W-A" 3 +"YEL004W" 2 +"YHR196W" 2 +"YLR452C" 2 +"YOL067C" 3 +"YBR265W" 2 +"YBR212W" 1 +"YMR200W" 4 +"YNL104C" 1 +"YFL034W" 1 +"YLR466C-B" 5 +"YJR114W" 3 +"YPR131C" 2 +"YGR244C" 5 +"YBR264C" 4 +"YKR075C" 1 +"YAL055W" 3 +"YOL007C" 2 +"YPR173C" 3 +"YCR019W" 1 +"YFR032C-A" 2 +"YDL091C" 1 +"YDR301W" 2 +"YKL054C" 5 +"YDL116W" 2 +"YKL043W" 1 +"YDL166C" 2 +"YOL049W" 4 +"YGL256W" 4 +"YNL289W" 2 +"YJL209W" 2 +"YGL097W" 2 +"YPR137W" 2 +"YPL061W" 5 +"YIL008W" 2 +"YEL017C-A" 2 +"YJR051W" 2 +"YDL211C" 2 +"YOR320C" 1 +"YIR021W-A" 3 +"YMR009W" 1 +"YGL010W" 5 +"YMR163C" 1 +"YNL110C" 2 +"YLR021W" 3 +"YJR034W" 1 +"YGR047C" 1 +"YML062C" 3 +"YER071C" 2 +"YCL055W" 2 +"YPL156C" 1 +"YOR237W" 3 +"YLR180W" 2 +"YNL021W" 3 +"YLR032W" 2 +"YOL141W" 2 +"YDR377W" 1 +"YDR451C" 2 +"YFR024C-A" 5 +"YBL086C" 1 +"YLR136C" 5 +"YGR249W" 5 +"YLR405W" 2 +"YKL196C" 4 +"YIL002C" 2 +"YGR196C" 1 +"YGR224W" 3 +"YBR153W" 1 +"YNL054W" 1 +"YNR040W" 4 +"YBL021C" 1 +"YDR279W" 2 +"YGL174W" 1 +"YNL091W" 1 +"YMR244W" 1 +"YNL258C" 1 +"YBR059C" 1 +"YIL015W" 2 +"YHR111W" 1 +"YER023W" 2 +"YGR246C" 1 +"YIL114C" 4 +"YKL017C" 3 +"YIL039W" 2 +"YNR046W" 2 +"YGR132C" 4 +"YBR009C" 4 +"YDL143W" 2 +"YOR129C" 1 +"YLR119W" 2 +"YDR085C" 1 +"YER117W" 2 +"YDR391C" 4 +"YPL007C" 3 +"YPL056C" 1 +"YPL088W" 4 +"YKL176C" 1 +"YBR191W" 2 +"YHL004W" 1 +"YFL060C" 1 +"YKL016C" 1 +"YNL277W-A" 3 +"YNL290W" 3 +"YKR001C" 5 +"YMR134W" 2 +"YPL194W" 3 +"YMR085W" 1 +"YIL138C" 4 +"YCL064C" 2 +"YOR063W" 2 +"YDR066C" 1 +"YLR326W" 1 +"YIL123W" 2 +"YJR063W" 2 +"YAL021C" 2 +"YKR079C" 2 +"YJL129C" 1 +"YPR022C" 1 +"YHL027W" 1 +"YML001W" 4 +"YDR422C" 1 +"YBR139W" 5 +"YGR004W" 2 +"YPL089C" 1 +"YHR075C" 1 +"YPR074C" 2 +"YPR036W" 2 +"YNL297C" 1 +"YKR024C" 2 +"YGL166W" 5 +"YBR162W-A" 2 +"YIR015W" 3 +"YNR045W" 1 +"YOR156C" 3 +"YNL012W" 5 +"YGR179C" 2 +"YML020W" 1 +"YBR007C" 1 +"YBR287W" 2 +"YLR109W" 4 +"YAL047C" 1 +"YHR212W-A" 2 +"YDL179W" 3 +"YEL048C" 2 +"YMR145C" 1 +"YDR022C" 1 +"YOR269W" 5 +"YOL054W" 1 +"YJR147W" 2 +"YML050W" 1 +"YOR270C" 2 +"YML003W" 3 +"YGL011C" 4 +"YGR085C.1" 2 +"YOR219C" 1 +"YDR111C" 2 +"YPL158C" 3 +"YDR169C-A" 3 +"YKL003C" 1 +"YDR420W" 2 +"YNL192W" 1 +"YOR008C-A" 3 +"YLR110C" 2 +"YDL087C" 5 +"YBR025C" 2 +"YGL145W" 2 +"YNL070W" 2 +"YDL115C" 1 +"YMR086W" 1 +"YLR013W" 3 +"YJL002C" 2 +"YNR044W" 2 +"YLR441C" 2 +"YKR015C" 3 +"YOR360C" 2 +"YPL219W" 1 +"YDR469W" 3 +"YKL150W" 1 +"YIL098C" 3 +"YGR194C" 5 +"YKR084C" 2 +"YMR204C" 1 +"YGR285C" 2 +"YCR069W" 1 +"YLR390W" 1 +"YJL216C" 3 +"YNL318C" 3 +"YDL210W" 5 +"YDR082W" 1 +"YGL221C" 2 +"YIL021W" 2 +"YKR069W" 1 +"YIL156W" 1 +"YGR046W" 1 +"YJR056C" 2 +"YMR017W" 1 +"YDR128W" 2 +"YGL170C" 1 +"YMR246W" 1 +"YLL034C" 2 +"YPL111W" 2 +"YLR133W" 3 +"YLR080W" 1 +"YKL064W" 1 +"YML110C" 4 +"YER157W" 2 +"YJL029C" 3 +"YHR096C" 5 +"YHR044C" 2 +"YOL129W" 5 +"YHR019C" 2 +"YDR009W" 5 +"YJL203W" 1 +"YBL058W" 4 +"YOR058C" 3 +"YNL042W-B" 3 +"YDR449C" 2 +"YOR273C" 3 +"YDR251W" 1 +"YBR111W-A" 3 +"YGR074W" 3 +"YBR163W" 1 +"YOR164C" 2 +"YIR022W" 2 +"YLR206W" 1 +"YGR029W" 1 +"YPR033C" 2 +"YML121W" 2 +"YNL020C" 1 +"YNR002C" 1 +"YIL084C" 3 +"YER152C" 2 +"YDR041W" 1 +"YGL210W" 1 +"YDR197W" 1 +"YDR214W" 5 +"YOR181W" 3 +"YLR466C-B.1" 3 +"YGR181W" 2 +"YDR003W" 1 +"YAR029W" 3 +"YBR031W" 2 +"YLL045C" 2 +"YBL044W" 3 +"YBR279W" 3 +"YGR035C" 4 +"YER025W" 2 +"YOR315W" 2 +"YMR054W" 2 +"YBL103C" 1 +"YIL036W" 1 +"YOR316C" 1 +"YHR059W" 1 +"YMR042W" 3 +"YMR001C-A" 3 +"YBL113C" 5 +"YLR045C" 2 +"YDR255C" 1 +"YHR193C" 2 +"YML081W" 1 +"YNL156C" 4 +"YOR112W" 2 +"YKL120W" 2 +"YKL051W" 2 +"YGR235C" 5 +"YBR058C" 1 +"YBR078W" 2 +"YEL043W" 2 +"YML009C" 1 +"YOR185C" 5 +"YOL115W" 4 +"YPL038W" 3 +"YPL117C" 4 +"YHL031C" 1 +"YBR082C" 2 +"YNL234W" 1 +"YOR330C" 3 +"YHR144C" 2 +"YPL047W" 1 +"YMR235C" 2 +"YLR340W" 2 +"YGL219C" 1 +"YNL301C.1" 2 +"YFL010W-A" 3 +"YKR089C" 1 +"YJR112W" 2 +"YER011W" 4 +"YFL051C" 3 +"YGR014W" 2 +"YDL078C" 5 +"YKL104C" 2 +"YOL124C" 2 +"YEL018W" 3 +"YOR375C" 2 +"YML059C" 2 +"YCR067C" 2 +"YIL072W" 3 +"YJL049W" 2 +"YDR316W-B" 2 +"YAR050W" 5 +"YOL094C" 2 +"YIR042C" 3 +"YJR089W" 2 +"YLL056C" 1 +"YJL087C" 2 +"YKR021W" 1 +"YJL168C" 3 +"YMR112C" 3 +"YJR153W" 3 +"YBL085W" 2 +"YBR160W" 2 +"YPL027W" 1 +"YHR116W" 1 +"YBR208C" 1 +"YDR080W" 2 +"YBR216C" 1 +"YCL066W" 2 +"YLR118C" 2 +"YLR106C" 2 +"YKL018W" 2 +"YOR256C" 1 +"YJL149W" 1 +"YNL097C" 1 +"YAR073W" 2 +"YGL086W" 2 +"YDR198C" 2 +"YOL097W-A" 3 +"YIL040W" 2 +"YNL014W" 1 +"YCL002C" 2 +"YOL040C" 2 +"YIL144W" 1 +"YPL059W" 1 +"YMR287C" 1 +"YJL011C" 2 +"YGR020C" 3 +"YDR258C" 1 +"YPL068C" 2 +"YMR314W" 4 +"YOL052C" 2 +"YMR105C" 5 +"YDL134C" 4 +"YNL061W" 2 +"YJL160C" 5 +"YCR038C" 1 +"YER070W" 2 +"YOR032W-A" 1 +"YDR365C" 2 +"YMR231W" 2 +"YBR181C" 2 +"YJR105W" 2 +"YOR289W" 5 +"YJR096W" 5 +"YKL014C" 2 +"YGL020C" 2 +"YGL244W" 4 +"YLR310C" 1 +"YBR192W" 3 +"YGL105W" 2 +"YMR013C" 4 +"YOL078W" 1 +"YDL081C" 2 +"YNL294C" 2 +"YJL121C" 2 +"YOR244W" 1 +"YHR004C" 1 +"YPL072W" 1 +"YBR083W" 2 +"YIL026C" 2 +"YKL021C" 2 +"YGR167W" 4 +"YNL176C" 1 +"YEL049W" 4 +"YDR406W" 1 +"YDR328C" 1 +"YJR101W" 1 +"YBR185C" 1 +"YDR324C" 2 +"YJR086W" 2 +"YGL251C" 3 +"YDL100C" 4 +"YOR079C" 2 +"YGR186W" 1 +"YDR480W" 1 +"YER062C" 4 +"YHR086W" 1 +"YHR208W" 2 +"YJR052W" 5 +"YFR028C" 2 +"YCL004W" 1 +"YMR150C" 2 +"YOR141C" 1 +"YLR079W" 3 +"YNL275W" 1 +"YGL142C" 1 +"YBR098W" 1 +"YMR313C" 1 +"YJR103W" 1 +"YHL024W" 1 +"YDR045C" 2 +"YMR152W" 5 +"YLR074C" 2 +"YDL174C" 5 +"YER081W" 3 +"YGL154C" 1 +"YFL001W" 2 +"YGR023W" 1 +"YLR408C" 1 +"YJR011C" 1 +"YKL010C" 1 +"YOR247W" 2 +"YJL171C" 2 +"YOR232W" 4 +"YPL255W" 2 +"YJR076C" 2 +"YDR190C" 2 +"YPL186C" 1 +"YGL155W" 3 +"YLR257W" 4 +"YKR103W" 3 +"YOR077W" 3 +"YIL002W-A" 1 +"YJL069C" 2 +"YLR264C-A" 2 +"YPR194C" 3 +"YER113C" 2 +"YNL147W" 4 +"YJL059W" 2 +"YDR498C" 3 +"YKL049C" 1 +"YFL040W" 3 +"YPL049C" 2 +"YHR134W" 5 +"YLR031W" 3 +"YKL175W" 4 +"YGL025C" 1 +"YIR028W" 3 +"YCL021W-A" 2 +"YOR095C" 2 +"YBR020W" 5 +"YLR095C" 2 +"YLR258W" 5 +"YNL272C" 2 +"YBR101C" 5 +"YAL041W" 2 +"YDR044W" 4 +"YNL080C" 2 +"YGR152C" 2 +"YEL059C-A" 3 +"YPR116W" 2 +"YLR412C-A" 3 +"YKL042W" 2 +"YHL003C" 2 +"YPR139C" 2 +"YJL153C" 3 +"YHR182W" 1 +"YMR092C" 4 +"YGR238C" 1 +"YML052W" 2 +"YCR072C" 2 +"YBL076C" 2 +"YER099C" 2 +"YGL130W" 1 +"YLL025W.1" 1 +"YGL263W" 3 +"YKL156W" 2 +"YMR030W" 1 +"YBR193C" 1 +"YCL040W" 5 +"YGR245C" 2 +"YBR237W" 1 +"YHR203C" 2 +"YKR029C" 3 +"YMR143W" 2 +"YBR150C" 1 +"YBL075C" 1 +"YOR288C" 2 +"YLR220W" 2 +"YML112W" 5 +"YAR009C" 2 +"YGL014W" 2 +"YLR315W" 3 +"YAL025C" 2 +"YLR006C" 3 +"YOR091W" 2 +"YDR373W" 4 +"YBR074W" 2 +"YMR024W" 2 +"YBR283C" 2 +"YLR116W" 3 +"YMR094W" 3 +"YDR394W" 5 +"YIL027C" 4 +"YOL088C" 2 +"YLR263W" 2 +"YBL061C" 2 +"YER044C" 2 +"YGL051W" 3 +"YKL068W-A" 1 +"YLL057C" 3 +"YJL004C" 4 +"YFR043C" 3 +"YKL073W" 2 +"YNL310C" 1 +"YBR048W.1" 2 +"YLR025W" 2 +"YML007W" 1 +"YJL194W" 2 +"YMR068W" 1 +"YGL135W" 2 +"YDR329C" 1 +"YER060W" 2 +"YGL237C" 1 +"YDR037W" 2 +"YLR425W" 1 +"YDR163W" 3 +"YAL016W" 5 +"YAL059W" 2 +"YOR087W" 2 +"YCR047C" 2 +"YBL042C" 2 +"YOR342C" 2 +"YDR107C" 5 +"YBR071W" 2 +"YDL204W" 5 +"YER096W" 1 +"YHR041C" 2 +"YOR299W" 2 +"YGL056C" 1 +"YOR259C" 5 +"YHR104W" 5 +"YML034W" 1 +"YBR182C" 3 +"YBL046W" 2 +"YHR023W" 2 +"YLR067C" 1 +"YNR053C" 2 +"YBL074C" 3 +"YGR212W" 3 +"YMR175W-A" 3 +"YIR001C" 1 +"YDL141W" 2 +"YHR159W" 1 +"YBR177C" 2 +"YOL058W" 1 +"YDR164C" 2 +"YCR092C" 2 +"YEL075C" 2 +"YCR079W" 1 +"YDR305C" 4 +"YDR212W" 2 +"YBR152W" 3 +"YDR348C" 1 +"YDR208W" 1 +"YPR143W" 2 +"YJR154W" 3 +"YDR517W" 1 +"YML061C" 3 +"YOR198C" 2 +"YPR027C" 3 +"YLR190W" 2 +"YDL219W" 2 +"YFL022C" 2 +"YJL054W" 2 +"YDR333C" 1 +"YBR145W" 1 +"YPL209C" 2 +"YDL102W" 1 +"YER018C" 5 +"YNL165W" 1 +"YBR180W" 3 +"YNR070W" 3 +"YHR147C" 1 +"YOL100W" 1 +"YNL256W" 2 +"YBR147W" 1 +"YML104C" 3 +"YOR194C" 1 +"YOR134W" 3 +"YIR018C-A" 3 +"YNL188W" 1 +"YPL144W" 2 +"YER125W" 2 +"YER072W" 2 +"YJR064W" 2 +"YML079W" 5 +"YJR117W" 2 +"YPL018W" 3 +"YMR026C" 1 +"YDL027C" 5 +"YAL024C" 2 +"YPL274W" 1 +"YIL165C" 1 +"YPL227C" 2 +"YER158C" 1 +"YJL061W" 3 +"YJR047C" 4 +"YBR126C" 5 +"YER185W" 2 +"YNL325C" 4 +"YNR001C" 5 +"YNL277W" 1 +"YOR305W" 2 +"YNL067W-B" 3 +"YKL079W" 1 +"YJR062C" 5 +"YOR242C" 3 +"YAL039C" 1 +"YDR238C" 2 +"YHR035W" 3 +"YIR024C" 3 +"YJL105W" 1 +"YDL124W" 5 +"YJL078C" 2 +"YDR135C" 4 +"YIL102C" 3 +"YGR195W" 2 +"YMR036C" 3 +"YNR014W" 5 +"YJL094C" 1 +"YLR329W" 3 +"YLR272C" 3 +"YNL079C" 5 +"YOL111C" 1 +"YGL151W" 1 +"YHL023C" 3 +"YHR073W" 1 +"YKR102W" 3 +"YLR420W" 2 +"YDR063W" 4 +"YGR231C" 5 +"YMR311C" 5 +"YGL026C" 2 +"YBR043C" 1 +"YCL009C" 2 +"YGR007W" 4 +"YCR107W.1" 3 +"YDR249C" 1 +"YJL176C" 2 +"YNL037C" 5 +"YML058W" 2 +"YPL226W" 2 +"YOR346W" 3 +"YFL011W" 3 +"YGL167C" 4 +"YLR178C" 5 +"YFL062W" 4 +"YEL040W" 2 +"YOR006C" 2 +"YNL123W" 2 +"YOR284W" 3 +"YHR175W-A" 2 +"YMR316W" 1 +"YBR254C" 4 +"YJL122W" 2 +"YDR532C" 2 +"YOR294W" 2 +"YKL221W" 1 +"YDL198C" 2 +"YOL156W" 5 +"YCL031C" 2 +"YOR114W" 3 +"YOR020W-A" 1 +"YKL033W-A" 2 +"YJL177W" 2 +"YJR042W" 2 +"YDR287W" 1 +"YNL075W" 2 +"YPR051W" 2 +"YKL068W" 2 +"YLR083C" 2 +"YCL036W" 2 +"YML069W" 4 +"YER127W" 2 +"YLR005W" 1 +"YOR236W" 2 +"YCL016C" 1 +"YKL058W" 4 +"YOR251C" 4 +"YDR257C" 3 +"YGR063C" 2 +"YJR094W-A" 2 +"YHR160C" 5 +"YGR207C" 1 +"YDR070C" 1 +"YLR308W" 3 +"YBR050C" 1 +"YJR090C" 1 +"YGR049W" 1 +"YML041C" 1 +"YGR261C" 2 +"YDR189W" 2 +"YGR284C" 2 +"YBR196C-A" 3 +"YDR059C" 1 +"YGR057C" 1 +"YIL060W" 3 +"YPL242C" 1 +"YIL106W" 2 +"YDL146W" 5 +"YKR008W" 1 +"YKR011C" 1 +"YOR377W" 3 +"YPL120W" 1 +"YKL184W" 2 +"YDL075W" 2 +"YHR199C" 1 +"YGL148W" 2 +"YCL008C" 2 +"YER143W" 5 +"YLL060C" 5 +"YBR092C" 2 +"YJL110C" 1 +"YEL073C" 3 +"YCR068W" 3 +"YBR030W" 2 +"YHR132W-A" 4 +"YHR079C-A" 3 +"YDR033W" 2 +"YDL132W" 1 +"YGL137W" 2 +"YDL188C" 1 +"YBR227C" 3 +"YLR227C" 1 +"YOL062C" 2 +"YDR035W" 1 +"YNL112W" 2 +"YMR201C" 1 +"YOR103C" 2 +"YMR321C" 2 +"YCR028C" 1 +"YBR056W-A" 1 +"YLR174W" 1 +"YAL019W" 2 +"YHR174W" 2 +"YJL112W" 1 +"YPL174C" 1 +"YDR115W" 1 +"YMR158W" 1 +"YPL063W" 2 +"YIL020C" 2 +"YDR142C" 1 +"YAL063C" 2 +"YMR310C" 2 +"YDR403W" 3 +"YJL130C" 2 +"YPL039W" 1 +"YLR164W" 1 +"YML006C" 1 +"YHL001W.1" 2 +"YER021W" 4 +"YLR114C" 2 +"YGR134W" 2 +"YGR255C" 1 +"YGL192W" 3 +"YFR010W" 4 +"YNL168C" 2 +"YBL005W" 1 +"YDR482C" 1 +"YDR196C" 4 +"YNL159C" 5 +"YDL097C" 5 +"YCR035C" 2 +"YPL123C" 1 +"YOR119C" 3 +"YER128W" 2 +"YOL013W-B" 2 +"YHR021C" 2 +"YPL071C" 3 +"YMR217W" 2 +"YBR278W" 1 +"YER039C-A" 3 +"YDL165W" 4 +"YER058W" 3 +"YKR061W" 1 +"YLR435W" 2 +"YNR008W" 2 +"YOR071C" 5 +"YBR219C.1" 2 +"YCL024W" 3 +"YFL014W" 5 +"YKL038W" 1 +"YJL084C" 1 +"YGR215W" 1 +"YBR187W" 2 +"YNL288W" 2 +"YJR141W" 1 +"YGL249W" 2 +"YBR176W" 4 +"YLR450W" 1 +"YLL012W" 1 +"YLR003C" 2 +"YLR247C" 1 +"YBR196C" 2 +"YOR369C" 2 +"YJL133C-A" 1 +"YJL138C" 2 +"YBR191W.1" 2 +"YOR153W" 4 +"YNR063W" 3 +"YIR013C" 3 +"YMR119W" 1 +"YOR011W" 3 +"YPL145C" 2 +"YDR240C" 2 +"YCR107W.2" 3 +"YNL299W" 2 +"YLR350W" 4 +"YOR255W" 3 +"YOR118W" 3 +"YPL126W" 2 +"YER179W" 3 +"YBR044C" 3 +"YLR438C-A" 1 +"YNL248C" 2 +"YGR099W" 1 +"YOR234C" 2 +"YPR057W" 1 +"YLR024C" 1 +"YNL059C" 3 +"YHR026W" 2 +"YPL099C" 1 +"YNR065C" 1 +"YMR285C" 2 +"YBL057C" 2 +"YGL080W" 4 +"YBL040C" 2 +"YGR060W" 2 +"YLR398C" 4 +"YJL173C" 2 +"YOR039W" 4 +"YER147C" 5 +"YAR023C" 5 +"YJL001W" 5 +"YDR295C" 1 +"YPR160W" 1 +"YHR071W" 1 +"YKL057C" 3 +"YJL074C" 3 +"YNL038W" 2 +"YPL139C" 1 +"YKL160W" 4 +"YLR411W" 1 +"YNL076W" 3 +"YDR483W" 4 +"YBR242W" 2 +"YLR121C" 5 +"YJL219W.1" 1 +"YMR064W" 1 +"YNL041C" 2 +"YMR160W" 1 +"YLR318W" 1 +"YKR013W" 2 +"YAR075W.1" 2 +"YMR033W" 2 +"YPR167C" 1 +"YNR034W-A" 5 +"YNL088W" 4 +"YHR048W" 4 +"YER065C" 1 +"YML051W" 5 +"YJL058C" 2 +"YLR130C" 4 +"YHR109W" 1 +"YKL198C" 3 +"YHL044W" 4 +"YML036W" 4 +"YKR096W" 1 +"YER034W" 1 +"YPL004C" 5 +"YMR189W" 2 +"YKL005C" 1 +"YER053C-A" 1 +"YDR104C" 1 +"YDR049W" 2 +"YKR054C" 1 +"YER030W" 5 +"YDL042C" 2 +"YLR201C" 1 +"YBR109C" 4 +"YOL096C" 5 +"YGR191W" 2 +"YCR073W-A" 4 +"YJL167W" 2 +"YNL141W" 2 +"YDR298C" 1 +"YDR242W" 1 +"YPL085W" 2 +"YPL100W" 1 +"YER119C" 2 +"YMR015C" 2 +"YMR139W" 5 +"YLR287C" 2 +"YHR143W" 2 +"YMR253C" 5 +"YPR164W" 2 +"YPR149W" 4 +"YKR091W" 1 +"YIL120W" 5 +"YOR216C" 2 +"YEL071W" 2 +"YGL255W" 4 +"YPR168W" 3 +"YBL092W" 2 +"YBR093C" 2 +"YAL009W" 4 +"YHL009W-B" 5 +"YEL042W" 2 +"YGR061C" 2 +"YDR075W" 2 +"YLR047C" 3 +"YOL087C" 1 +"YKL173W" 2 +"YMR262W" 5 +"YDL001W" 3 +"YLR284C" 1 +"YFR049W" 1 +"YML046W" 4 +"YLR126C" 3 +"YLR053C" 1 +"YNL086W" 1 +"YKL023W" 1 +"YAR019C" 1 +"YER077C" 2 +"YMR238W" 2 +"YDR320C" 2 +"YEL012W" 1 +"YGR165W" 1 +"YKL065C" 4 +"YCR097W" 2 +"YPL037C" 2 +"YIL066C" 3 +"YBR158W" 2 +"YPL203W" 1 +"YJR142W" 2 +"YMR195W" 5 +"YFR027W" 3 +"YGR094W" 2 +"YBR014C" 4 +"YJR144W" 3 +"YMR108W" 2 +"YDR434W" 4 +"YIL149C" 1 +"YHR120W" 1 +"YBR119W" 1 +"YKR005C" 3 +"YBR046C" 1 +"YFR006W" 4 +"YPR127W" 1 +"YGR260W" 2 +"YMR260C" 2 +"YBR041W" 2 +"YEL041W" 1 +"YBR133C" 4 +"YMR098C" 1 +"YDR381W" 4 +"YDR026C" 1 +"YER015W" 1 +"YLR162W-A" 3 +"YER106W" 1 +"YPL058C" 1 +"YML082W" 3 +"YDL013W" 2 +"YMR273C" 1 +"YNL197C" 1 +"YJL106W" 5 +"YHR032W" 2 +"YGL233W" 1 +"YDR093W" 2 +"YNL237W" 1 +"YAL018C" 3 +"YML094W" 2 +"YPL161C" 2 +"YHR206W" 2 +"YHR099W" 2 +"YJL136C" 2 +"YDR523C" 3 +"YOR116C" 2 +"YOR031W" 1 +"YOR067C" 2 +"YJL053W" 2 +"YJL180C" 1 +"YFR031C" 2 +"YDR435C" 1 +"YFL041W-A" 1 +"YDR379W" 1 +"YDR281C" 2 +"YOR108W" 2 +"YMR228W" 1 +"YPR189W" 3 +"YGL144C" 1 +"YPL113C" 1 +"YPL270W" 2 +"YGL161C" 4 +"YIL145C" 2 +"YMR252C" 4 +"YIL133C" 2 +"YIR017C" 1 +"YNL331C" 1 +"YER132C" 4 +"YOR014W" 2 +"YOL030W" 2 +"YFR031C-A.1" 2 +"YOR293W.1" 2 +"YLR417W" 2 +"YNR021W" 2 +"YLR167W" 2 +"YLL023C" 4 +"YBR008C" 2 +"YPL082C" 1 +"YMR061W" 3 +"YDR334W" 1 +"YGR268C" 5 +"YNL024C" 2 +"YGL030W" 2 +"YMR143W.1" 2 +"YDR268W" 1 +"YBR024W" 5 +"YJL126W" 2 +"YNL029C" 1 +"YOR052C" 1 +"YEL027W" 2 +"YNL158W" 2 +"YGR070W" 1 +"YGR161C" 1 +"YOL082W" 1 +"YGR044C" 2 +"YFR037C" 2 +"YML029W" 1 +"YDR254W" 2 +"YMR111C" 1 +"YDR225W" 4 +"YMR154C" 3 +"YNL312W" 2 +"YNL238W" 2 +"YGR173W" 2 +"YPR028W" 2 +"YOR229W" 3 +"YPR192W" 1 +"YNL084C" 4 From 8c6fe405321749c38d60eec737dc30b6319c5407 Mon Sep 17 00:00:00 2001 From: Kostya HPC Date: Tue, 24 Jul 2018 22:33:11 -0400 Subject: [PATCH 14/18] moved the drivers (mi_R, bbsr_python, and design_response_translation) from inside run() into general variables of class BBSR_TFA_Workflow, so that they can be modified in child classes (in particular, with the different calculation of tau) --- inferelator_ng/bbsr_tfa_workflow.py | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/inferelator_ng/bbsr_tfa_workflow.py b/inferelator_ng/bbsr_tfa_workflow.py index 3b574ff..792d64b 100644 --- a/inferelator_ng/bbsr_tfa_workflow.py +++ b/inferelator_ng/bbsr_tfa_workflow.py @@ -25,6 +25,9 @@ class BBSR_TFA_Workflow(workflow.WorkflowBase): reduce_searchspace = False + mi_clr_driver = mi_R.MIDriver() + regression_driver = bbsr_python.BBSR_runner() + design_response_driver = design_response_translation.PythonDRDriver() #this is the python switch def run(self): """ @@ -32,9 +35,6 @@ def run(self): """ np.random.seed(self.random_seed) - self.mi_clr_driver = mi_R.MIDriver() - self.regression_driver = bbsr_python.BBSR_runner() - self.design_response_driver = design_response_translation.PythonDRDriver() #this is the python switch self.get_data() self.compute_common_data() self.compute_activity() From 14ffa7c7afb90481ac200998d46206f63293ac8a Mon Sep 17 00:00:00 2001 From: Kostya HPC Date: Tue, 24 Jul 2018 22:38:12 -0400 Subject: [PATCH 15/18] rearranged InfereCLaDR_Workflow so that it does not inherit from BBSR_TFA_Workflow(). Instead, I initiate different instances of BBSR_TFA_Workflow(), and one of them is modified to be with the GS_split. Also added PythonDRDriver_with_tau_vector that inherits from PythonDRDriver but allows tau to be a vector. Also now there is a run() function that first optimizes taus and then uses those predicted taus for a full run on each condition cluster --- inferelator_ng/inferecladr_workflow.py | 145 +++++++++++++++++-------- 1 file changed, 97 insertions(+), 48 deletions(-) diff --git a/inferelator_ng/inferecladr_workflow.py b/inferelator_ng/inferecladr_workflow.py index ede0378..a754b55 100644 --- a/inferelator_ng/inferecladr_workflow.py +++ b/inferelator_ng/inferecladr_workflow.py @@ -1,13 +1,13 @@ import numpy as np import os from . import workflow -import design_response_translation #added python design_response +from design_response_translation import PythonDRDriver #added python design_response from tfa import TFA from results_processor import ResultsProcessor import mi_R import bbsr_python import datetime -#from kvsstcp.kvsclient import KVSClient +from kvsstcp.kvsclient import KVSClient import pandas as pd import xarray as xr from . import utils @@ -20,52 +20,88 @@ # Connect to the key value store service (its location is found via an # environment variable that is set when this is started vid kvsstcp.py # --execcmd). -#kvs = KVSClient() +kvs = KVSClient() # Find out which process we are (assumes running under SLURM). -#rank = int(os.environ['SLURM_PROCID']) +rank = int(os.environ['SLURM_PROCID']) + +class BBSR_TFA_Workflow_with_Prior_GS_split(BBSR_TFA_Workflow, PriorGoldStandardSplitWorkflowBase): + """ + The class BBSR_TFA_Workflow_with_Prior_GS_split is a case of multiple inheritance, + as it inherits both from BBSR_TFA_Workflow and PriorGoldStandardSplitWorkflowBase + """ + #define your own emit_results: + def emit_results(self, betas, rescaled_betas, gold_standard, priors): + print "skipping emit results" + #raise NotImplementedError + +class PythonDRDriver_with_tau_vector(PythonDRDriver): + """ + The class exists to modify the design-response calculation to have + tau as a vector instead of a scalar + """ + #define your own compute_response_variable: + def compute_response_variable(self, tau, following_delta, expr_current_condition, expr_following_condition): + return (tau.iloc[:,0]/float(following_delta)) * (expr_following_condition.astype('float64') - expr_current_condition.astype('float64')) + expr_current_condition.astype('float64') -class InfereCLaDR_Workflow(BBSR_TFA_Workflow, PriorGoldStandardSplitWorkflowBase): + +class InfereCLaDR_Workflow(object): expr_clust_files = ["clusters/expr_clust1.tsv", "clusters/expr_clust2.tsv", "clusters/expr_clust3.tsv", "clusters/expr_clust4.tsv"] gene_clust_files = ["clusters/genes_clust1.tsv", "clusters/genes_clust2.tsv", "clusters/genes_clust3.tsv", "clusters/genes_clust4.tsv", "clusters/genes_clust5.tsv"] + full_gene_clust_mapping_file = 'clusters/gn_clust_full.tsv' meta_clust_files = ["clusters/meta_clust1.tsv", "clusters/meta_clust2.tsv", "clusters/meta_clust3.tsv", "clusters/meta_clust4.tsv"] seeds = range(42,62) taus = [0, 5, 10, 20, 30, 40, 50, 60, 70, 80, 90, 100, 120, 140, 160, 200, 250] + #run with the full prior and predicted half-lives: + def run(self): + self.optimize_taus() + bbsr_full = BBSR_TFA_Workflow() + (bbsr_full.input_dir, bbsr_full.num_bootstraps, bbsr_full.delTmax, bbsr_full.delTmin, bbsr_full.reduce_searchspace) = (self.input_dir, self.num_bootstraps, self.delTmax, self.delTmin, self.reduce_searchspace) #this line is ugly but I don't know how to do this differently) + for clust in range(len(self.expr_clust_files)): + predicted_taus_vect = self.predicted_half_lives[clust,:] + bbsr_full.tau = self.set_predicted_taus_for_all_genes(bbsr_full, predicted_taus_vect) + bbsr_full.design_response_driver = PythonDRDriver_with_tau_vector() + bbsr_full.run() + def optimize_taus(self): run_objs = [] + bbsr_object = BBSR_TFA_Workflow_with_Prior_GS_split() + (bbsr_object.input_dir, bbsr_object.num_bootstraps, bbsr_object.delTmax, bbsr_object.delTmin, bbsr_object.reduce_searchspace) = (self.input_dir, self.num_bootstraps, self.delTmax, self.delTmin, self.reduce_searchspace) #this line is ugly but I don't know how to do this differently) + self.set_gene_clusters(bbsr_object) ## loop over condition clusters for clust in range(len(self.expr_clust_files)): print("Optimizing tau for expression cluster {} out of {}".format(clust+1,len(self.expr_clust_files))) - self.expression_matrix_file = self.expr_clust_files[clust] - self.meta_data_file = self.meta_clust_files[clust] + bbsr_object.expression_matrix_file = self.expr_clust_files[clust] + bbsr_object.meta_data_file = self.meta_clust_files[clust] ## loop over splits for seed in self.seeds: print("Resampling the prior for seed {} out of {}".format(seed,max(self.seeds))) - self.random_seed = seed + bbsr_object.random_seed = seed ## loop over taus for tau in self.taus: # set self.tau to current value # set self.prior, expression, etc. print("Running BBSR for tau = {} ({} out of {})".format(tau, np.concatenate(np.where(tau==np.asarray(self.taus)))+1, len(self.taus))) - self.tau = tau - self.run() - run_result = Results_of_a_Run() - (run_result.clust, run_result.seed, run_result.tau) = (clust, seed, tau) - (run_result.betas, run_result.rescaled_betas) = (self.betas, self.rescaled_betas) - (run_result.priors_data, run_result.gold_standard) = (self.priors_data, self.gold_standard) - self.set_gene_clusters() - run_result.gene_clust_index = self.gene_clust_index - run_result.evaluate_tau_run() - run_objs.append(run_result) - - self.results_by_clust_seed_tau = run_objs - self.emit_results_by_cluster() - - def set_gene_clusters(self): + bbsr_object.tau = tau + bbsr_object.run() + if 0 == rank: + run_result = Results_of_a_Run() + (run_result.clust, run_result.seed, run_result.tau) = (clust, seed, tau) + run_result.evaluate_tau_run(bbsr_object.betas, bbsr_object.rescaled_betas, bbsr_object.gold_standard, bbsr_object.priors_data, self.gene_clust_index) + run_objs.append(run_result) + + if 0 == rank: + self.results_by_clust_seed_tau = run_objs + self.emit_results_by_cluster(bbsr_object) + kvs.put("predicted_half_lives",self.predicted_half_lives) + else: + self.predicted_half_lives = kvs.view("predicted_half_lives") + + def set_gene_clusters(self, bbsr_object): gene_clust_index=[] for gene_clust_file in self.gene_clust_files: - file_path = self.input_file(gene_clust_file) + file_path = bbsr_object.input_file(gene_clust_file) genes_index = self.read_gene_clust_names(file_path) gene_clust_index.append(genes_index) self.gene_clust_index = gene_clust_index @@ -75,17 +111,27 @@ def read_gene_clust_names(self, file_like): exp = pd.read_csv(file_like, sep="\t", header=None) assert exp.shape[1] == 1, "gene cluster file should have one column " return list(exp[0]) - - ## with a vector of taus, build custom logic for a final design and response - # loop over bootstraps: - def run_with_full_prior(self): - #self.optimize_taus(X, Y, etc...) - raise NotImplementedError # implement later - def emit_results_by_cluster(self): + def set_predicted_taus_for_all_genes(self, bbsr_object, predicted_taus_vect): + cluster_table = self.read_all_gene_clust_names(bbsr_object, self.full_gene_clust_mapping_file) + taus = pd.DataFrame(np.zeros(cluster_table.shape[0])) + taus = taus.set_index(cluster_table.index) + for gene_clust in range(cluster_table.max()+1): + taus.iloc[np.where(cluster_table==gene_clust)] = predicted_taus_vect[gene_clust] + return taus + + def read_all_gene_clust_names(self, bbsr_object, file_name): + "Read genes from two-columb tsv file where gene names are in the first column and cluster belonging is in the second column. " + clust_table = pd.read_csv(bbsr_object.input_file(file_name), sep="\t", header=None) + assert clust_table.shape[1] == 2, "gene cluster file should have one column " + clust_table_new = pd.DataFrame(clust_table.iloc[:,1]-clust_table.iloc[:,1].min()) #moving the index down so that it starts with 0; changing the shape to be just a 1-column dataframe + clust_table_new = clust_table_new.set_index(clust_table.iloc[:,0]) + return clust_table_new + + def emit_results_by_cluster(self, bbsr_object): self.create_auprs_xarray() self.calculate_predicted_half_lives() - self.output_dir = os.path.join(self.input_dir, datetime.datetime.now().strftime('%Y-%m-%d_%H-%M-%S')) + self.output_dir = os.path.join(bbsr_object.input_dir, datetime.datetime.now().strftime('%Y-%m-%d_%H-%M-%S')) os.makedirs(self.output_dir) self.predicted_half_lives.to_pandas().to_csv(os.path.join(self.output_dir, 'predicted_half-lives.tsv'), sep = '\t') self.plot_aupr_vs_tau() @@ -98,7 +144,8 @@ def create_auprs_xarray(self): auprs_xarray = xr.DataArray(np.zeros((len(self.expr_clust_files), len(self.gene_clust_files), len(self.seeds), len(self.taus))), dims=['cond_clusts', 'gene_clusts', 'rand_seeds', 'taus'], coords=[cond_clust_coords, gene_clust_coords, self.seeds, self.taus]) #Fill in the AUPR values: for run_result in self.results_by_clust_seed_tau: - auprs_xarray[run_result.clust,:,:,:].loc[:,run_result.seed,run_result.tau] = run_result.recall_precision_by_gene_clust[2] + #auprs_xarray[run_result.clust,:,:,:].loc[:,run_result.seed,run_result.tau] = run_result.recall_precision_by_gene_clust[2] + auprs_xarray[run_result.clust,:,:,:].loc[:,run_result.seed,run_result.tau] = run_result.auprs_by_gene_clust self.auprs_xarray = auprs_xarray @@ -138,28 +185,30 @@ def emit_results(self, betas, rescaled_betas, gold_standard, priors): class Results_of_a_Run(object): #define precision-recall evaluations for every tau - def evaluate_tau_run(self): - self.results_processor = ResultsProcessorForGoldStandardSplit(self.betas, self.rescaled_betas) - self.combined_confidences = self.results_processor.compute_combined_confidences() - (filter_index, filter_cols) = self.results_processor.get_nonempty_rows_cols(self.combined_confidences, self.gold_standard) - (combined_confidences_filtered, gold_standard_filtered) = self.results_processor.create_filtered_gold_standard_and_confidences(self.combined_confidences, self.gold_standard, self.priors_data, filter_index, filter_cols) - (self.recall, self.precision) = self.results_processor.calculate_precision_recall(combined_confidences_filtered, gold_standard_filtered) - self.aupr = self.results_processor.calculate_aupr(self.recall, self.precision) - - recall_by_gene_clust = [] - precision_by_gene_clust = [] + def evaluate_tau_run(self, betas, rescaled_betas, gold_standard, priors_data, gene_clust_index): + self.results_processor = ResultsProcessorForGoldStandardSplit(betas, rescaled_betas) + combined_confidences = self.results_processor.compute_combined_confidences() + (filter_index, filter_cols) = self.results_processor.get_nonempty_rows_cols(combined_confidences, gold_standard) + (combined_confidences_filtered, gold_standard_filtered) = self.results_processor.create_filtered_gold_standard_and_confidences(combined_confidences, gold_standard, priors_data, filter_index, filter_cols) + # for debugging only: + #(self.recall, self.precision) = self.results_processor.calculate_precision_recall(combined_confidences_filtered, gold_standard_filtered) + #self.aupr = self.results_processor.calculate_aupr(self.recall, self.precision) + + #recall_by_gene_clust = [] + #precision_by_gene_clust = [] aupr_by_gene_clust = [] - for this_gene_clust_index in self.gene_clust_index: + for this_gene_clust_index in gene_clust_index: genes_index_filtered = set(this_gene_clust_index).intersection(filter_index) - (combined_confidences_gclust, gold_standard_gclust) = self.results_processor.create_filtered_gold_standard_and_confidences(self.combined_confidences, self.gold_standard, self.priors_data, genes_index_filtered, filter_cols) + (combined_confidences_gclust, gold_standard_gclust) = self.results_processor.create_filtered_gold_standard_and_confidences(combined_confidences, gold_standard, priors_data, genes_index_filtered, filter_cols) (recall, precision) = self.results_processor.calculate_precision_recall(combined_confidences_gclust, gold_standard_gclust) aupr = self.results_processor.calculate_aupr(recall, precision) - recall_by_gene_clust.append(recall) - precision_by_gene_clust.append(precision) + #recall_by_gene_clust.append(recall) + #precision_by_gene_clust.append(precision) aupr_by_gene_clust.append(aupr) - self.recall_precision_by_gene_clust = [recall_by_gene_clust, precision_by_gene_clust, aupr_by_gene_clust] + #self.recall_precision_by_gene_clust = [recall_by_gene_clust, precision_by_gene_clust, aupr_by_gene_clust] + self.auprs_by_gene_clust = aupr_by_gene_clust From 220e0eeba62b9262c93ab79092cadf8da1b8614e Mon Sep 17 00:00:00 2001 From: Kostya HPC Date: Tue, 24 Jul 2018 22:56:26 -0400 Subject: [PATCH 16/18] removed the extra class that inherited bbsr_tfa and gs_split; now the process initiates with workflow.run() --- run_inferecladr_on_slurm.sh | 18 ++++++++++++++++++ yeast_inferecladr_workflow_runner.py | 8 ++++---- 2 files changed, 22 insertions(+), 4 deletions(-) create mode 100644 run_inferecladr_on_slurm.sh diff --git a/run_inferecladr_on_slurm.sh b/run_inferecladr_on_slurm.sh new file mode 100644 index 0000000..12b3d62 --- /dev/null +++ b/run_inferecladr_on_slurm.sh @@ -0,0 +1,18 @@ +#!/bin/sh + +#SBATCH --nodes=12 +#SBATCH --tasks-per-node=5 +#SBATCH --mem=64GB +#SBATCH --time=20:00:00 +#SBATCH --job-name=InfereCLaDR_full +#SBATCH --output=InfereCLaDR_64GB_12_taus_2_seeds_20_bs_60tasks.out + +module purge +module load r/intel/3.4.2 python/intel/2.7.12 bedtools/intel/2.26.0 +source /home/kmt331/inferelator_ng/py2.7/bin/activate + +cd /home/kmt331/inferelator_ng +export PYTHONPATH=$PYTHONPATH:$(pwd)/kvsstcp + +time python ~/inferelator_ng/kvsstcp/kvsstcp.py --execcmd 'srun -n '${SLURM_NTASKS}' python yeast_inferecladr_workflow_runner.py' + diff --git a/yeast_inferecladr_workflow_runner.py b/yeast_inferecladr_workflow_runner.py index b4ad52e..4ed0795 100644 --- a/yeast_inferecladr_workflow_runner.py +++ b/yeast_inferecladr_workflow_runner.py @@ -1,5 +1,5 @@ from inferelator_ng.bbsr_tfa_workflow import BBSR_TFA_Workflow -from inferelator_ng.prior_gs_split_workflow import PriorGoldStandardSplitWorkflowBase +#from inferelator_ng.prior_gs_split_workflow import PriorGoldStandardSplitWorkflowBase from inferelator_ng.inferecladr_workflow import InfereCLaDR_Workflow @@ -16,7 +16,7 @@ #workflow.seeds = range(42,62) workflow.seeds = range(42,44) #workflow.taus = [0, 5, 10, 20, 30, 40, 50, 60, 70, 80, 90, 100, 120, 140, 160, 200, 250] -workflow.taus = [0, 5, 10] -#workflow.run() +workflow.taus = [0, 5] workflow.reduce_searchspace=True -workflow.optimize_taus() +#workflow.optimize_taus() +workflow.run() From f1dcc1811f86e6747825b122088a8c04818f6077 Mon Sep 17 00:00:00 2001 From: Kostya HPC Date: Fri, 31 Aug 2018 15:57:28 -0400 Subject: [PATCH 17/18] added a loop over bootstraps that used kvs.get() to get rid of MI matrices that accumulated at the end of every iteration of the loop in optimize_taus(). also removed an empty dimension that caused if you run this for one condition cluster or one gene cluster --- inferelator_ng/inferecladr_workflow.py | 7 +++++++ 1 file changed, 7 insertions(+) diff --git a/inferelator_ng/inferecladr_workflow.py b/inferelator_ng/inferecladr_workflow.py index a754b55..e9e864f 100644 --- a/inferelator_ng/inferecladr_workflow.py +++ b/inferelator_ng/inferecladr_workflow.py @@ -90,6 +90,9 @@ def optimize_taus(self): (run_result.clust, run_result.seed, run_result.tau) = (clust, seed, tau) run_result.evaluate_tau_run(bbsr_object.betas, bbsr_object.rescaled_betas, bbsr_object.gold_standard, bbsr_object.priors_data, self.gene_clust_index) run_objs.append(run_result) + #this is necessary to make sure (duplicate) MI matrices do not accumulate across clusters, seeds, and taus: + for idx, bootstrap in enumerate(bbsr_object.get_bootstraps()): + dummy = kvs.get('mi %d'%idx) #kvs.get() removes the variable if 0 == rank: self.results_by_clust_seed_tau = run_objs @@ -160,6 +163,10 @@ def plot_aupr_vs_tau(self): ylim_max = self.auprs_xarray.max() half_lives = self.auprs_xarray.coords['taus']*np.log(2) + # eliminating the empty dimension if you only have 1 gene cluster or 1 condition cluster: + if len(self.auprs_xarray.coords['cond_clusts']) == 1 or len(self.auprs_xarray.coords['gene_clusts']) == 1: + axes = axes[np.newaxis].T + for gene_idx in range(len(axes)): axes[gene_idx, 0].set_ylabel("AUPR", fontsize=8) for cond_idx in range(len(axes[0])): From 8a00de010ee61835900e9b012502d1396874e17c Mon Sep 17 00:00:00 2001 From: Kostya HPC Date: Fri, 31 Aug 2018 16:02:07 -0400 Subject: [PATCH 18/18] minor changes --- ...runner_gold_standard_from_prior_split_50_percent.py | 6 +++--- run_inferecladr_on_slurm.sh | 8 ++++---- yeast_inferecladr_workflow_runner.py | 10 +++++----- 3 files changed, 12 insertions(+), 12 deletions(-) diff --git a/bsubtilis_bbsr_workflow_runner_gold_standard_from_prior_split_50_percent.py b/bsubtilis_bbsr_workflow_runner_gold_standard_from_prior_split_50_percent.py index f85733a..fbcdf8a 100644 --- a/bsubtilis_bbsr_workflow_runner_gold_standard_from_prior_split_50_percent.py +++ b/bsubtilis_bbsr_workflow_runner_gold_standard_from_prior_split_50_percent.py @@ -11,7 +11,7 @@ class BBSR_TFA_Workflow_with_Prior_GS_split(BBSR_TFA_Workflow, PriorGoldStandard # Common configuration parameters workflow.input_dir = 'data/bsubtilis' workflow.num_bootstraps = 2 -workflow.delTmax = 110 -workflow.delTmin = 0 -workflow.tau = 45 +workflow.delTmax = 60000 +workflow.delTmin = 1 +workflow.tau = 20 workflow.run() diff --git a/run_inferecladr_on_slurm.sh b/run_inferecladr_on_slurm.sh index 12b3d62..ffd4bb5 100644 --- a/run_inferecladr_on_slurm.sh +++ b/run_inferecladr_on_slurm.sh @@ -1,11 +1,11 @@ #!/bin/sh -#SBATCH --nodes=12 -#SBATCH --tasks-per-node=5 +#SBATCH --nodes=3 +#SBATCH --tasks-per-node=20 #SBATCH --mem=64GB -#SBATCH --time=20:00:00 +#SBATCH --time=40:00:00 #SBATCH --job-name=InfereCLaDR_full -#SBATCH --output=InfereCLaDR_64GB_12_taus_2_seeds_20_bs_60tasks.out +#SBATCH --output=InfereCLaDR_64GB_15_taus_8_seeds_30_bs_clust1_60tasks.out module purge module load r/intel/3.4.2 python/intel/2.7.12 bedtools/intel/2.26.0 diff --git a/yeast_inferecladr_workflow_runner.py b/yeast_inferecladr_workflow_runner.py index 4ed0795..2ba799b 100644 --- a/yeast_inferecladr_workflow_runner.py +++ b/yeast_inferecladr_workflow_runner.py @@ -7,16 +7,16 @@ # Common configuration parameters workflow.input_dir = 'data/yeast' #workflow.expr_clust_files = ["clusters/expr_clust1.tsv", "clusters/expr_clust2.tsv", "clusters/expr_clust3.tsv", "clusters/expr_clust4.tsv"] -workflow.expr_clust_files = ["clusters/expr_clust2.tsv", "clusters/expr_clust3.tsv"] +workflow.expr_clust_files = ["clusters/expr_clust1.tsv"] #workflow.meta_clust_files = ["clusters/meta_clust1.tsv", "clusters/meta_clust2.tsv", "clusters/meta_clust3.tsv", "clusters/meta_clust4.tsv"] -workflow.meta_clust_files = ["clusters/meta_clust2.tsv", "clusters/meta_clust3.tsv"] -workflow.num_bootstraps = 1 +workflow.meta_clust_files = ["clusters/meta_clust1.tsv"] +workflow.num_bootstraps = 30 workflow.delTmax = 6000 workflow.delTmin = 1 #workflow.seeds = range(42,62) -workflow.seeds = range(42,44) +workflow.seeds = range(42,50) #workflow.taus = [0, 5, 10, 20, 30, 40, 50, 60, 70, 80, 90, 100, 120, 140, 160, 200, 250] -workflow.taus = [0, 5] +workflow.taus = [0, 5, 10, 20, 30, 40, 50, 60, 70, 80, 90, 100, 120, 140, 160] workflow.reduce_searchspace=True #workflow.optimize_taus() workflow.run()