chore(cli): prune unused commands and make skills optional

Remove unused CLI commands to reduce complexity:
- sweep: Required 1.5GB model download, Python deps
- quality: Had wrong DB path, incomplete integration
- monitor: Duplicated daemon functionality
- test: TestingAgent was stub implementation
- workflow: Half-implemented feature

Skills command now feature-flagged (STACKMEMORY_SKILLS=true):
- handoff, checkpoint, dig, rlm still available when enabled

Removes ~2600 lines of code while keeping core functionality.

Author: jonathanpeterwu

package.json

@@ -1,6 +1,6 @@
 {
   "name": "@stackmemoryai/stackmemory",
-  "version": "0.5.47",
+  "version": "0.5.48",
   "description": "Lossless memory runtime for AI coding tools - organizes context as a call stack instead of linear chat logs, with team collaboration and infinite retention",
   "engines": {
     "node": ">=20.0.0",
@@ -74,6 +74,9 @@
     "daemons:stop": "node scripts/claude-sm-autostart.js stop",
     "daemon:session": "node dist/daemon/session-daemon.js",
     "daemon:session:start": "node dist/daemon/session-daemon.js --session-id",
+    "daemon:start": "node dist/daemon/unified-daemon.js",
+    "daemon:stop": "node dist/cli/index.js daemon stop",
+    "daemon:status": "node dist/cli/index.js daemon status",
     "sync:start": "node scripts/background-sync-manager.js",
     "sync:setup": "./scripts/setup-background-sync.sh",
     "prepare": "echo 'Prepare step completed'"

src/__tests__/integration/cli-integration.test.ts

@@ -87,31 +87,4 @@ describe('CLI Integration', () => {
       expect(result).toContain('Context Usage');
     });
   });
-
-  describe('Workflow Command', () => {
-    it('should list available workflows', () => {
-      // Initialize first
-      execSync(`node ${cliPath} init`, { cwd: testDir });
-
-      const result = execSync(`node ${cliPath} workflow --list`, {
-        cwd: testDir,
-        encoding: 'utf8',
-      });
-
-      expect(result).toContain('Available Workflows');
-    });
-
-    it('should show workflow status', () => {
-      // Initialize first
-      execSync(`node ${cliPath} init`, { cwd: testDir });
-
-      const result = execSync(`node ${cliPath} workflow --status`, {
-        cwd: testDir,
-        encoding: 'utf8',
-      });
-
-      // Should show status (even if no workflow active)
-      expect(result).toBeDefined();
-    });
-  });
 });

src/cli/commands/__tests__/integration.test.ts

@@ -49,50 +49,6 @@ describe('CLI Integration Tests', () => {
     });
   });
 
-  describe('Workflow Commands', () => {
-    it('should list available workflows', () => {
-      const result = execSync(cli('workflow --list'), {
-        cwd: testDir,
-        encoding: 'utf8',
-      });
-
-      // Updated to match actual output
-      expect(result).toContain('Available Workflows');
-      expect(result).toContain('tdd');
-      expect(result).toContain('feature');
-      expect(result).toContain('bugfix');
-      expect(result).toContain('refactor');
-    });
-
-    it('should start TDD workflow', () => {
-      const result = execSync(cli('workflow --start tdd'), {
-        cwd: testDir,
-        encoding: 'utf8',
-      });
-
-      // Updated to match actual output
-      expect(result).toContain('Started tdd workflow');
-      expect(result).toContain('Workflow ID:');
-    });
-
-    it('should show workflow status', { timeout: 30000 }, () => {
-      // Start a workflow first
-      execSync(cli('workflow --start feature'), {
-        cwd: testDir,
-        timeout: 15000,
-      });
-
-      const result = execSync(cli('workflow --status'), {
-        cwd: testDir,
-        encoding: 'utf8',
-        timeout: 15000,
-      });
-
-      // Updated to match actual output
-      expect(result).toContain('Active Workflows');
-    });
-  });
-
   describe('Handoff Commands', () => {
     it('should generate handoff document', () => {
       const result = execSync(cli('handoff capture'), {