I'm trying to use msqrob2 gui. I'm not a strong coder at all. When I input just the tutorial data in and try and perform the normalization, it gets hung up and in R studio spits out the message:
Listening on http://127.0.0.1:3145
Warning: Unable to infer variable name for metaReactive because no srcref is available. Please report an issue to https://github.com/rstudio/shinymeta/issues/new
Warning: Unable to infer variable name for metaReactive because no srcref is available. Please report an issue to https://github.com/rstudio/shinymeta/issues/new
Warning: 'experiments' dropped; see 'metadata'
harmonizing input:
removing 6 sampleMap rows not in names(experiments)
'Reverse' found in 2 out of 2 assay(s)
'Contaminant' found in 2 out of 2 assay(s)
'Proteins' found in 2 out of 2 assay(s)
Warning: Error in .checkFilterVariables: 'input', 'minIdentified' is/are absent from all rowData.
3: runApp
2: print.shiny.appobj
1: