From 9a4e8397ef842038572e746e310eeeb1e5a409ea Mon Sep 17 00:00:00 2001 From: J Montgomery Maxwell Date: Fri, 4 Mar 2022 10:32:55 -0600 Subject: [PATCH 1/2] Print guid w/ `drs-pull ls` --- gen3/tools/download/drs_download.py | 1 + 1 file changed, 1 insertion(+) diff --git a/gen3/tools/download/drs_download.py b/gen3/tools/download/drs_download.py index 2a32e0c83..5fec86bf8 100644 --- a/gen3/tools/download/drs_download.py +++ b/gen3/tools/download/drs_download.py @@ -214,6 +214,7 @@ class Downloadable: def __str__(self): return ( f'{self.file_name if self.file_name is not None else "not available" : >45}; ' + f"{self.object_id}; " f"{humanfriendly.format_size(self.file_size) :>12}; " f'{self.hostname if self.hostname is not None else "not resolved"}; ' f'{self.created_time.strftime("%m/%d/%Y, %H:%M:%S") if self.created_time is not None else "not available"}' From 824a0f96cfb28016ab70145f7867dae2ceeb1b76 Mon Sep 17 00:00:00 2001 From: jmontmaxwell Date: Fri, 4 Mar 2022 18:33:11 +0000 Subject: [PATCH 2/2] Apply automatic documentation changes --- docs/_build/doctrees/environment.pickle | Bin 298912 -> 298947 bytes docs/_build/doctrees/tools/indexing.doctree | Bin 97996 -> 97996 bytes docs/_build/doctrees/tools/metadata.doctree | Bin 34281 -> 34277 bytes .../gen3/tools/download/drs_download.html | 1 + docs/_build/html/searchindex.js | 2 +- docs/_build/html/tools/indexing.html | 2 +- docs/_build/html/tools/metadata.html | 2 +- 7 files changed, 4 insertions(+), 3 deletions(-) diff --git a/docs/_build/doctrees/environment.pickle b/docs/_build/doctrees/environment.pickle index 4c65f7e6edef6e2858cf31f642c124048eece549..625d3265867f8f1c9b79138498c1a41797786851 100644 GIT binary patch delta 5900 zcma)Ac~}%zw&zwAOS1@y>@?j#gSfC54Jsn5hy+VO)EJ{-Kw6;$nn1TECI*Q{MBDZB zn;Hc{HW4+7wqv`28Y78{!EG{5lF2sT`(7N!n0fPk@69-xdFS5h2A!Ed-ao&4_IuAc zw{G341Fd7Ow2tZBsHuC?q_26~ViqJrNv*}~UTZ3;EU&FCH&mf)WqF0(Vjg8Q7%FPx zEA__W(qdz=#q2ghIy0Tc>|9<|s(%YrY%H%@Wij(>YcZhRxwNLXsM=IfF)VP{x#Bd% zCS#dZrG3QJb#YEk+3EMU{PO;(q)AfqFn9W^80o+;XM6p3Qrj>$xcWV5-!ONp;$^92 znEPVxZ>7D%+}H1m%h^yWA=`Vi(jR$ni5a5imQIxvWw;Mf{NBvQMG|u7ZO32|AGN+hGIZ- zK@}84`D=EuT&SUsV-nUq#j*)@>a?U4dUZO|0l(2rCY|6KmFxAwf}ky`1j?c&LV9!> z#tZ;HdJ-6-RnQ!zQte_%DzgQ^!Kmf%L$oi99v4g6A$43W=>qGxhmaT-36rL%;p>MEQIzTDf zbmR@ zj*c`TI?{CLNRy!>O@)p$5jxT|=-3V?5`)ImC`x@;L0BzV8CV5a@+|Lm@W@(gm8P8~ zxTeuCb;cv?WL;`4{72GixHnk`x|suTa#j^~vKlNYI`~ua05r|1!cH3D-E1A4Ng066 zQ`Imus{lJ12JUHvu>NHo)Ta%=d#P2}-AK5fUI@$6bdZ-Z0E_bs*y%uM&MbsA1z4Ob zI=Ya5Dgx~UO@{V?j{9j+9;`pCHT$g|S-S{~DXhZnqJ{CtgLSmGJD zeL~^Sa|@w)iq2Y=6G@O5ZEb#~K_RBj+pG{b#BBupG7Y%RLgBl-LU^31vo6UGBS?&f z8={}JxnK=}@T4l-fNS^6)IrF?uNKkr<`Pz59B3DFIo2uUXsvOe)y9F=8wXl(9B8UI z&_r;cspJZ5i=lfv%v+S1Lu27SVB6sT)j+h@v$)jjxeCGkMWO6j!Kaz6aQGCmb97^j z=;*3PIJ)=|j^;4J(Nsn_n$ZYHpOF!+Bh$`Oqg^ars#G}oU=4F7v)8H$LrD=nR>m4V zJ_-(vbijIgG2uv;^~{nILYl21OP3KhrAShnweIy~cUV(4%6d)zAxB!QYs)@&A$zU! z4W)!MS*_LX?sy#bubV|WtWVdyKbCY_>vrlqUFqCdF4(a*1eyzitY0_%$dh*K&DL%{ zhqktnRlboGs*&}zk+rpvb+wT-wUPC-k!91!3g5^wY-Igx#CG;|yp9KEQ0G*{`JL&A zyE?NFKkrN+&EVQK6EU+Z195X#GUAo4m+;~HpRO##+6Z9%Q_W4-)*q8dkz}3b*CbJ*PW%9wL;~gad5NSRsOM#xH(MA4yB<{&!I%bZx3Z4 zM)uepj=}LGxs%!Srrygy5b7o-t~vRZXYN-;)~|1j?gI&ADN{%4YDa8mU@8ZsEaGhZfL|MTki!$ zM_m-tJ2V}6!Ux3LkxKW`1hNnAADx4!`EaHSJKes46Ndv}(y>wCxyl1}edwZyzjuh` zYX=>5+Xr_)OoqIZ&M@}aG>kFtSQ28xvFW4*E*(olB*$|QbC1tOv>eYs{O$29M0IbL zD?3I7HQ5x2cmIib zh#n_rBj%sXR3e4C!Q&o(=sg*s@ERrZJ>!usazL!%+G+<)05?0+c+;}+9nA9b&jG+h25u^%2mGAz^OdgTA5SEh$e3fr*e4m zr)lW^9buaOz6tPCy)zuW_{ieh}uVGJdA#=_>0=3}Jae3Xr-zLJkvb!DMq zc#Ro;b!Dc)4l*`j&~wjufB1Hb3JhCapHFCr={J6irzBkdcsZix>O91XtBVjny1D?- zZ=eX#G_VZu&H$Y)@)Md#-6vUi$-MeWF5>7<-$1NpIP_@&(&5+ihz-{=5U*dG>%!jM zJQQD_4*AzTP`K>6U8q7KcISE=3LiOy-qg}_(Smt}_NsJ3-HjY2iXU_M{>D^=4P

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Source code for gen3.tools.download.drs_download

def __str__(self): return ( f'{self.file_name if self.file_name is not None else "not available" : >45}; ' + f"{self.object_id}; " f"{humanfriendly.format_size(self.file_size) :>12}; " f'{self.hostname if self.hostname is not None else "not resolved"}; ' f'{self.created_time.strftime("%m/%d/%Y, %H:%M:%S") if self.created_time is not None else "not available"}' diff --git a/docs/_build/html/searchindex.js b/docs/_build/html/searchindex.js index f19ed7774..d3915c839 100644 --- a/docs/_build/html/searchindex.js +++ b/docs/_build/html/searchindex.js @@ -1 +1 @@ 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Auth Helper","Gen3 File Class","Welcome to Gen3 SDK\u2019s documentation!","Gen3 Index Class","Gen3 Jobs Class","Gen3 Metadata Class","Gen3 Query Class","Gen3 Submission Class","Gen3 Tools","DRS Download Tools","Indexing Tools","Metadata Tools","Gen3 Workspace Storage"],titleterms:{"class":[1,3,4,5,6,7],DRS:9,auth:0,document:2,download:[9,10],file:1,gen3:[0,1,2,3,4,5,6,7,8,12],helper:0,index:[3,10],indic:2,ingest:11,job:4,metadata:[5,11],queri:6,sdk:2,storag:12,submiss:7,tabl:2,tool:[8,9,10,11],verifi:10,welcom:2,workspac:12}}) \ No newline at end of file diff --git a/docs/_build/html/tools/indexing.html b/docs/_build/html/tools/indexing.html index 5cb17a709..3a43ac99c 100644 --- a/docs/_build/html/tools/indexing.html +++ b/docs/_build/html/tools/indexing.html @@ -376,7 +376,7 @@

Indexing Tools
-async gen3.tools.indexing.verify_manifest.async_verify_object_manifest(commons_url, manifest_file, max_concurrent_requests=24, manifest_row_parsers={'acl': <function _get_acl_from_row>, 'authz': <function _get_authz_from_row>, 'file_name': <function _get_file_name_from_row>, 'file_size': <function _get_file_size_from_row>, 'guid': <function _get_guid_from_row>, 'md5': <function _get_md5_from_row>, 'urls': <function _get_urls_from_row>}, manifest_file_delimiter=None, output_filename='verify-manifest-errors-1646090319.1819432.log')[source]
+async gen3.tools.indexing.verify_manifest.async_verify_object_manifest(commons_url, manifest_file, max_concurrent_requests=24, manifest_row_parsers={'acl': <function _get_acl_from_row>, 'authz': <function _get_authz_from_row>, 'file_name': <function _get_file_name_from_row>, 'file_size': <function _get_file_size_from_row>, 'guid': <function _get_guid_from_row>, 'md5': <function _get_md5_from_row>, 'urls': <function _get_urls_from_row>}, manifest_file_delimiter=None, output_filename='verify-manifest-errors-1646418787.2742755.log')[source]

Verify all file object records into a manifest csv

Parameters
diff --git a/docs/_build/html/tools/metadata.html b/docs/_build/html/tools/metadata.html index dfb8838a9..445389c70 100644 --- a/docs/_build/html/tools/metadata.html +++ b/docs/_build/html/tools/metadata.html @@ -102,7 +102,7 @@

Metadata Tools
-async gen3.tools.metadata.ingest_manifest.async_ingest_metadata_manifest(commons_url, manifest_file, metadata_source, auth=None, max_concurrent_requests=24, manifest_row_parsers={'guid_for_row': <function _get_guid_for_row>, 'indexed_file_object_guid': <function _query_for_associated_indexd_record_guid>}, manifest_file_delimiter=None, output_filename='ingest-metadata-manifest-errors-1646090320.5399446.log', get_guid_from_file=True, metadata_type=None)[source]
+async gen3.tools.metadata.ingest_manifest.async_ingest_metadata_manifest(commons_url, manifest_file, metadata_source, auth=None, max_concurrent_requests=24, manifest_row_parsers={'guid_for_row': <function _get_guid_for_row>, 'indexed_file_object_guid': <function _query_for_associated_indexd_record_guid>}, manifest_file_delimiter=None, output_filename='ingest-metadata-manifest-errors-1646418788.594357.log', get_guid_from_file=True, metadata_type=None)[source]

Ingest all metadata records into a manifest csv

Parameters