Feature/new version

[Iamsdt]

This pull request makes significant updates to the CI/CD workflows, documentation configuration, and codebase setup. The main goals are to modernize and streamline the continuous integration process, improve documentation structure, update pre-commit hooks, and clean up configuration and code comments for clarity and maintainability.

CI/CD Workflow Modernization:

• Added a new GitHub Actions workflow .github/workflows/ci.yaml for CI on pull requests to main, including steps for Python dependency caching, environment setup with uv, running pre-commit checks, test execution with coverage, and uploading coverage reports to Codecov.
• Removed legacy workflows: .github/workflows/formatting_and_pytest.yml and .github/workflows/coverage_report.yml, consolidating formatting, testing, and coverage reporting into the new CI workflow. [1] [2]

Documentation and MkDocs Configuration:

• Updated mkdocs.yaml to reflect new project branding and repo info, restructured theme and plugin settings, and reorganized markdown extensions for improved documentation navigation and code highlighting. [1] [2] [3]
• Removed outdated configuration and authentication documentation from Config.md to clean up and clarify supported options.

Pre-commit Hook Updates:

• Upgraded pre-commit-hooks to v6.0.0, added exclusions for tests/docs/examples, and removed the mypy hook, streamlining pre-commit checks and reducing unnecessary linting overhead.

Codebase and Configuration Cleanups:

• Changed default API host in pyagenity_api/cli.py from 0.0.0.0 to 127.0.0.1 for improved local security.
• Integrated ModelResponseConverter for consistent model response handling in agent API calls. [1] [2]
• Removed unused code and improved docstring formatting in graph/react.py for clarity and maintainability. [1] [2]
• Improved logging in module loader and worker middleware for better debugging and error tracking. [1] [2] [3]
• Cleaned up imports and removed unused dependencies from pyagenity_api/src/app/main.py.

Task and Testing Instructions:

• Added a new Task.md outlining the correct API testing sequence and expectations for error handling during integration tests.

These changes collectively improve the developer experience, reliability of CI/CD, and maintainability of the codebase.